Query 000858
Match_columns 1251
No_of_seqs 513 out of 3770
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 16:27:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000858.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_628-632//hhsearch_pdb/000858hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 593.0 12.7 548 449-1238 199-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 411.4 5.1 546 450-1238 200-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 373.7 26.0 250 943-1221 142-395 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 373.2 12.2 287 944-1243 199-487 (806)
5 4b4t_M 26S protease regulatory 1.0 1 1 366.4 24.0 253 942-1223 174-430 (434)
6 4b4t_I 26S protease regulatory 1.0 1 1 366.2 22.5 251 943-1222 176-430 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 365.9 26.1 261 943-1233 203-467 (467)
8 4b4t_L 26S protease subunit RP 1.0 1 1 365.0 23.5 258 943-1234 175-436 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 351.1 25.5 250 943-1221 166-421 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 312.1 29.0 291 944-1240 7-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=593.01 Aligned_cols=548 Identities=27% Similarity=0.408 Sum_probs=440.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 43333345544306789999874221024554222247899888931202789815889999999984418719998466
Q 000858 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1251)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1251)
-+|+|++..-+ +..|..|.+.....|++++.. ..---...+.|||.|||| ....+||||+|+++++.++.++..
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f--~~~g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALF--KAIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGG--TSCCCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHH--HHCCCCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEEHH
T ss_conf 99990351499--999999999999875198988--635899997589779899--988999999999719839999737
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 78999986520000201466667899999865126889732223456543456789998666234476444579801243
Q 000858 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1251)
Q Consensus 529 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 608 (1251)
.+.+.+.
T Consensus 273 ~l~sk~~------------------------------------------------------------------------- 279 (806)
T 3cf2_A 273 EIMSKLA------------------------------------------------------------------------- 279 (806)
T ss_dssp HHHSSCT-------------------------------------------------------------------------
T ss_pred HHHCCCC-------------------------------------------------------------------------
T ss_conf 9543331-------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 15787864588889998754551652023588875112103789867878988778887510245534469986046789
Q 000858 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1251)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~~~~~~~~k~ 688 (1251)
.+...
T Consensus 280 ---------------------------------------------------------------------------gese~ 284 (806)
T 3cf2_A 280 ---------------------------------------------------------------------------GESES 284 (806)
T ss_dssp ---------------------------------------------------------------------------THHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
T ss_conf ---------------------------------------------------------------------------67899
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCHHHHHCC--------CHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 8999999986103789869997470334115--------9336899999871399--98899962257886322489997
Q 000858 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGG 758 (1251)
Q Consensus 689 ~~~~l~evl~ses~~~P~Ilfi~Dve~~l~~--------~~~~~~~l~~~L~~L~--g~VivIgs~~~~d~~k~k~~~~~ 758 (1251)
.+..+|+.+.. .+|.||||+|+|.++.. ..++.+.|...++.+. ++|+|||+||
T Consensus 285 ~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN------------- 348 (806)
T 3cf2_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN------------- 348 (806)
T ss_dssp HHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS-------------
T ss_pred HHHHHHHHHHH---CCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-------------
T ss_conf 99999999997---29929998510023344577887399999999999974666669879999669-------------
Q ss_pred CEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHH--HHHHHHHHHHHHHHCCCCH
Q ss_conf 50203576033220136899855223234562699989763179808853883467999--9999985433443203203
Q 000858 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 836 (1251)
Q Consensus 759 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferqle~~Lpd~~gR~~I 836 (1251)
+||.+|+ ||+| ||++++++++||...|.+|
T Consensus 349 -----------------~~d~LD~-------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 349 -----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp -----------------STTTSCT-------------------------------TTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred -----------------CHHHCCH-------------------------------HHHCCCCCCEEEECCCCCHHHHHHH
T ss_conf -----------------8032698-------------------------------8857863616886689798999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCC-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887733089985100002202578887889998734655676311578887-8842-123672155598886543322
Q 000858 837 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSES 914 (1251)
Q Consensus 837 l~IhT~l~~~~l~~~dL~~La~~tkg~sgadIe~Lv~~A~s~Al~r~~~~i~~-~~kl-~Is~~sIkv~~~df~~al~ei 914 (1251)
+++|+.... ...+++++.||..|.||+|+||+.||+.|+..++.|..+.+.. .... .....++.+...||..++.++
T Consensus 381 L~~~l~~~~-~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 381 LQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHTCSSSE-ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred HHHHHCCCC-CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHC
T ss_conf 999856899-8864389999975689989999999999999999841451200013320455225565199999999728
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 23211121101236899855158789999888841124839999999999874037825552178888993299995897
Q 000858 915 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 994 (1251)
Q Consensus 915 k~~~~slk~iv~~~e~ek~ll~~iIp~~e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpG 994 (1251)
+|.... .. ....+.++|++|+|++++++.|++.+.+|+.+++.|.+.+ ..|++|+|||||||
T Consensus 460 ~ps~~r----------------~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPG 521 (806)
T 3cf2_A 460 NPSALR----------------ET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPG 521 (806)
T ss_dssp SCCCCC----------------CC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTT
T ss_pred CCCCCC----------------CC-CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCC
T ss_conf 783112----------------34-4457887888817889999999999975666899997148-88886079866877
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CHHHHHHHHH
Q ss_conf 74999999999991993999956521100147408999999999883099159984420001478998--5279999999
Q 000858 995 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMK 1072 (1251)
Q Consensus 995 TGKT~LAkAIA~elg~pfi~Id~s~L~s~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il 1072 (1251)
||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|++.+||||||||||.|++.|... ......++++
T Consensus 522 tGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~ 601 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp SSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHH
T ss_pred CCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 89639999999983896687424112103343689999999999997299635204256776315888889866999999
Q ss_pred HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHC
Q ss_conf 867764068855688648999943898887399982--035442478999789999999999522268802199999983
Q 000858 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA 1150 (1251)
Q Consensus 1073 ~~LL~~ldgl~~k~~~~VlVIaTTN~pe~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T 1150 (1251)
++|+.+|+++... .+|+||+|||+|+.||++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|
T Consensus 602 ~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t 679 (806)
T 3cf2_A 602 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679 (806)
T ss_dssp HHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------
T ss_pred HHHHHHHHCCCCC--CCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 9999997487877--99899993798043898471778550799979969999999999985679998778999999768
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 89959999999999985416999989899999998511599999886655445399999999981546111111112345
Q 000858 1151 DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1230 (1251)
Q Consensus 1151 ~Gysg~DLk~Lv~~Aa~~airrile~~~~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v 1230 (1251)
+||+|+||.++|+.|++.++++.++............. ...........++|+++||+.|+++++||++.+ .+..+.
T Consensus 680 ~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y~ 756 (806)
T 3cf2_A 680 NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNP-SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYE 756 (806)
T ss_dssp ------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHH
T ss_conf 99999999999999999999999985644433301574-100123345668647999999998679999999--999999
Q ss_pred HHHHHHCC
Q ss_conf 69997338
Q 000858 1231 QWNELYGE 1238 (1251)
Q Consensus 1231 ~WndigG~ 1238 (1251)
+|.+.++.
T Consensus 757 ~~~~~f~~ 764 (806)
T 3cf2_A 757 MFAQTLQQ 764 (806)
T ss_dssp CCC-----
T ss_pred HHHHHHHC
T ss_conf 99999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=411.45 Aligned_cols=546 Identities=27% Similarity=0.420 Sum_probs=395.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 33333455443067899998742210245542222478998889312027898158899999999844187199984667
Q 000858 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1251)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1251)
.++|+++--+ +..+..|.+.....|+++++.+ +---.....|||.||+| ....+||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGT--SSCCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHH--HCCCCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 8998882880--9999999999998742989998--63889997389989399--9879999999997199689997557
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 89999865200002014666678999998651268897322234565434567899986662344764445798012431
Q 000858 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1251)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g 609 (1251)
+.+.+..
T Consensus 274 l~~~~~g------------------------------------------------------------------------- 280 (806)
T 1ypw_A 274 IMSKLAG------------------------------------------------------------------------- 280 (806)
T ss_dssp HSSSSTT-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
T ss_conf 6544101-------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 57878645888899987545516520235888751121037898678789887788875102455344699860467898
Q 000858 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1251)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~~~~~~~~k~~ 689 (1251)
.....
T Consensus 281 ---------------------------------------------------------------------------~~~~~ 285 (806)
T 1ypw_A 281 ---------------------------------------------------------------------------ESESN 285 (806)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
T ss_conf ---------------------------------------------------------------------------58999
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCHHHHHCC----C----HHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999999986103789869997470334115----9----33689999987139--9988999622578863224899975
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGL 759 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilfi~Dve~~l~~----~----~~~~~~l~~~L~~L--~g~VivIgs~~~~d~~k~k~~~~~~ 759 (1251)
+..+|+-... ..|.||||+|++.++.. . .++...+...++.+ ...++||+++|
T Consensus 286 l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn-------------- 348 (806)
T 1ypw_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN-------------- 348 (806)
T ss_dssp HHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS--------------
T ss_pred HHHHHHHHHH---CCCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC--------------
T ss_conf 9999999986---49957983007775111466631688999999999865411466178760239--------------
Q ss_pred EEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHH--HHHHHHHHHHHHHHCCCCHH
Q ss_conf 0203576033220136899855223234562699989763179808853883467999--99999854334432032036
Q 000858 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 837 (1251)
Q Consensus 760 ~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferqle~~Lpd~~gR~~Il 837 (1251)
+|+.+++ +++| ||++++++..|+...|.+|+
T Consensus 349 ----------------~~~~ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 349 ----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp ----------------CTTTSCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred ----------------CCHHCCH-------------------------------HHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ----------------8100499-------------------------------98646554443556999999999999
Q ss_pred HHHHHHHHCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 78877330899-851000022025788878899987346556763115788878-8421-23672155598886543322
Q 000858 838 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLK-ISTESIMYGLNILQGIQSES 914 (1251)
Q Consensus 838 ~IhT~l~~~~l-~~~dL~~La~~tkg~sgadIe~Lv~~A~s~Al~r~~~~i~~~-~kl~-Is~~sIkv~~~df~~al~ei 914 (1251)
+++.. ...+ .+.++..++..+.+|.++++..+|..|...++.+....+... ..+. .....+.+...+|..++...
T Consensus 382 ~~~~~--~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 382 QIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHTTT--TSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred HHHHH--CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99873--3877622006777776147536899999999999987642010115542010124445555566531111235
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 23211121101236899855158789999888841124839999999999874037825552178888993299995897
Q 000858 915 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 994 (1251)
Q Consensus 915 k~~~~slk~iv~~~e~ek~ll~~iIp~~e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpG 994 (1251)
.+.. ... .......+.|++++|++.+++.|.+.+.+++.+++.|...+ ..++.++||+||||
T Consensus 460 ~~s~----------------~~~-~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppG 521 (806)
T 1ypw_A 460 NPSA----------------LRE-TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPG 521 (806)
T ss_dssp CCCC----------------CCC-CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTT
T ss_pred CCHH----------------HHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCC
T ss_conf 7144----------------420-00257542111124430222218999975553639897548-88775368977999
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CHHHHHHHHH
Q ss_conf 74999999999991993999956521100147408999999999883099159984420001478998--5279999999
Q 000858 995 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMK 1072 (1251)
Q Consensus 995 TGKT~LAkAIA~elg~pfi~Id~s~L~s~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il 1072 (1251)
||||++|+++|.+++.+|+.++++.+.+.|+|+.++.++.+|..|+...|+||||||||.++..+... .......+++
T Consensus 522 tGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~ 601 (806)
T 1ypw_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp SSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 87899999999984898799861676553057547889999999870698599998744542112687777641689999
Q ss_pred HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHC
Q ss_conf 867764068855688648999943898887399982--035442478999789999999999522268802199999983
Q 000858 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA 1150 (1251)
Q Consensus 1073 ~~LL~~ldgl~~k~~~~VlVIaTTN~pe~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T 1150 (1251)
++|+..++++... .+++||+|||+++.||++++| ||+..++++.|+.++|..||+.++++..+..++++..|+..+
T Consensus 602 ~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t 679 (806)
T 1ypw_A 602 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679 (806)
T ss_dssp HHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGG
T ss_pred HHHHHHHHCCCCC--CCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 9999987545666--87699984387122798783765567305559979999999999986459997522799999735
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 89959999999999985416999989899999998511599999886655445399999999981546111111112345
Q 000858 1151 DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1230 (1251)
Q Consensus 1151 ~Gysg~DLk~Lv~~Aa~~airrile~~~~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v 1230 (1251)
.||+++||.++|+.|+..++++.++............ ............++++++||+.|++.++||++.+ .+..+.
T Consensus 680 ~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye 756 (806)
T 1ypw_A 680 NGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYE 756 (806)
T ss_dssp SSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHH
T ss_conf 0059999999999999999999999877665430146-4312334346667607999999998678999999--999999
Q ss_pred HHHHHHCC
Q ss_conf 69997338
Q 000858 1231 QWNELYGE 1238 (1251)
Q Consensus 1231 ~WndigG~ 1238 (1251)
+|.+.++.
T Consensus 757 ~~~~~~~~ 764 (806)
T 1ypw_A 757 MFAQTLQQ 764 (806)
T ss_dssp --------
T ss_pred HHHHHHHH
T ss_conf 99999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=373.70 Aligned_cols=250 Identities=33% Similarity=0.576 Sum_probs=229.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248399999999998740378255521788889932999958977499999999999199399995652110
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s 1022 (1251)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 9999888828889999999999999874999998679-998882588589999878999999985188852888689511
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0147408999999999883099159984420001478998--52799999998677640688556886489999438988
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe 1100 (1251)
+|+|++++.++.+|..|+..+||||||||||.++++|... .......+++++|+..++++... .+|+||+|||+++
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHH
T ss_conf 33546899999999999870994676533411115778889997689999999999960433888--8757881269814
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87399982--0354424789997899999999995222688021999999838995999999999998541699998989
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~ 1178 (1251)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|++.++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9999998511599999886655445399999999981546111
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1221 (1251)
Q Consensus 1179 ~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~ 1221 (1251)
....|+++||+.|++++.+...+
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf --------------------99875999999999998572655
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=373.17 Aligned_cols=287 Identities=37% Similarity=0.587 Sum_probs=254.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88884112483999999999987403782555217888899329999589774999999999991993999956521100
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s~ 1023 (1251)
+.++|+||+|+++++++|++.+.+|+++|+.|.+.+ .+||+|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCC
T ss_conf 999903514999999999999998751989886358-9999758977989998899999999971983999973795433
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 14740899999999988309915998442000147899852799999998677640688556886489999438988873
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1251)
Q Consensus 1024 ~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe~Ld 1103 (1251)
|.|++++.++.+|..|++++|+||||||||.|++++.... ....++++++|+..|+++... .+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHHHCC
T ss_conf 3167899999999999972992999851002334457788-739999999999997466666--9879999669803269
Q ss_pred HHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99982--0354424789997899999999995222688021999999838995999999999998541699998989999
Q 000858 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1181 (1251)
Q Consensus 1104 ~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~~ek 1181 (1251)
++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+|+||.+||+.|++.++++.........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88857863616886689798999999999856899886438999997568998999999999999999984145120001
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99985115999998866554453999999999815461111111123456999733887644
Q 000858 1182 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1243 (1251)
Q Consensus 1182 ~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v~WndigG~~~sRk 1243 (1251)
............++++||..|+.+++|+...+.....|.+.|+||+|++.+|+
T Consensus 435 ---------~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 435 ---------ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp ---------CCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred ---------CCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf ---------33204552255651999999997287831123444578878888178899999
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.41 Aligned_cols=253 Identities=32% Similarity=0.560 Sum_probs=231.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99888841124839999999999874037825552178888993299995897749999999999919939999565211
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~ 1021 (1251)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 89799867609579999999999999974999998679-99887268779499988999999999959988998644643
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0014740899999999988309915998442000147899852--79999999867764068855688648999943898
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1022 s~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~--~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
++|+|++++.++.+|..|+..+||||||||+|.++++|..... .....+++++|+..++++... .+|+||||||++
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 134563899999999999861990896033256652257788887469999999999971366888--998999948992
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887399982--035442478999789999999999522268802199999983899599999999999854169999898
Q 000858 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1100 e~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~ 1177 (1251)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|++.++++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 233996715774038998089599999999999856899987679999998689989999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999851159999988665544539999999998154611111
Q 000858 1178 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1223 (1251)
Q Consensus 1178 ~~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~ 1223 (1251)
....|+++||..|+++++|+.++.+
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ---------------------9987699999999999737777573
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.23 Aligned_cols=251 Identities=35% Similarity=0.616 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248399999999998740378255521788889932999958977499999999999199399995652110
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s 1022 (1251)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 8998600557699999999999999876999998679-997778844889996399999999998599879988799531
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01474089999999998830991599844200014789985--2799999998677640688556886489999438988
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe 1100 (1251)
+|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++++|+..++++... .+|+||+|||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 44766999999999999865991898761222036677888776589999999999972476788--9979999579805
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87399982--0354424789997899999999995222688021999999838995999999999998541699998989
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~ 1178 (1251)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|++.++++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985115999998866554453999999999815461111
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1222 (1251)
Q Consensus 1179 ~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~ 1222 (1251)
....|+++||+.|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf --------------------899669999999999870798733
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=365.92 Aligned_cols=261 Identities=32% Similarity=0.567 Sum_probs=235.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248399999999998740378255521788889932999958977499999999999199399995652110
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s 1022 (1251)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|++||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0147408999999999883099159984420001478998--52799999998677640688556886489999438988
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe 1100 (1251)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... +......+++++++..++++... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCCC
T ss_conf 66778999999999998761784675223211013556767786278999999999986555788--8379882878931
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87399982--0354424789997899999999995222688021999999838995999999999998541699998989
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~ 1178 (1251)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|+.|++.++++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 17954636665507998389699999999999854899987779999997779999999999999999999983------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999998511599999886655445399999999981546111111112345699
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1233 (1251)
Q Consensus 1179 ~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v~Wn 1233 (1251)
....++++||..|++++.++.... .....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf --------------------887669999999999996474561-2578998619
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=364.99 Aligned_cols=258 Identities=36% Similarity=0.636 Sum_probs=232.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248399999999998740378255521788889932999958977499999999999199399995652110
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s 1022 (1251)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|++||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 9998966717859999999999999874999998679-897876999899998499999999998599989984146205
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01474089999999998830991599844200014789985--2799999998677640688556886489999438988
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe 1100 (1251)
+|.|++++.++.+|..|+..+||||||||||.++++|...+ ......+++++|+..++++... .+++||+|||+++
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCH
T ss_conf 52017899999999999863896464204433333334478875368999999999983466677--9869999339903
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87399982--0354424789997899999999995222688021999999838995999999999998541699998989
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~ 1178 (1251)
.||++++| ||++.|+|++|+.++|.+||+.++++.....++++..||..|+||+|+||.++|+.|++.++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999985115999998866554453999999999815461111111123456999
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1234 (1251)
Q Consensus 1179 ~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v~Wnd 1234 (1251)
....|+++||..|++++.++...+ ...+|+.
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e-----~~~e~~K 436 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE-----GTIEYQK 436 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHHCCCCC-----CCHHHHC
T ss_conf --------------------998779999999999987503701-----2356425
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=351.12 Aligned_cols=250 Identities=35% Similarity=0.557 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411248399999999998740378255521788889932999958977499999999999199399995652110
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~elg~pfi~Id~s~L~s 1022 (1251)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0147408999999999883099159984420001478998--52799999998677640688556886489999438988
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe 1100 (1251)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... .......+++++|+..++|+... .+++||+|||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 45460599999999999973997463002243303556787888718999999999984387877--9979999619815
Q ss_pred CCCHHHHH--CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87399982--035442478-999789999999999522268802199999983899599999999999854169999898
Q 000858 1101 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~I~-lPd~eeR~eILk~ll~k~~l~~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~ 1177 (1251)
.||++++| ||++.|+|+ +|+.++|..||+.++++..+..++++..||..|+||+|+||.++|+.|++.++++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 569666368751599981999999999999999855799996358999997779988999999999999999987-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 99999998511599999886655445399999999981-546111
Q 000858 1178 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CASVSS 1221 (1251)
Q Consensus 1178 ~~ek~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Al~kv-~pS~s~ 1221 (1251)
....++++||+.|+.++ +++...
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------------998779999999999761766895
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.12 Aligned_cols=291 Identities=36% Similarity=0.641 Sum_probs=243.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC
Q ss_conf 88884112483999999999987403782555217888899329999589774999999999991-99399995652110
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1251)
Q Consensus 944 ~~vtfddI~Gle~vk~~L~e~I~~pl~rpelf~k~~i~kP~~gILL~GPpGTGKT~LAkAIA~el-g~pfi~Id~s~L~s 1022 (1251)
+.++|+||+|++.+++.|++.+.+|+.+++.|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99998873498999999999999987698977178--8999549998999960999999999980899679987499776
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 01474089999999998830991599844200014789985279999999867764068855688648999943898887
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1251)
Q Consensus 1023 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~pe~L 1102 (1251)
.|.|..++.++.+|..++..+|+||||||||.+++.+... ......+++++|+..++++.. ...+++||++||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCC
T ss_conf 4311999999999999986299589960478753556665-335899999999999743456-68887999966985658
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 399982035442478999789999999999522268-8021999999838995999999999998541699998989999
Q 000858 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1181 (1251)
Q Consensus 1103 d~aLlrRF~~~I~I~lPd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~T~Gysg~DLk~Lv~~Aa~~airrile~~~~ek 1181 (1251)
+++++|||+..+++++|+.++|.+||+.++...... .+.++..|+..+.||+|+||.++|+.|++.++++.+.......
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999316768995796999999999999721788899999999999769999999999999999999999986455554
Q ss_pred HHHHH--------HCCCCCCC---------------CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99985--------11599999---------------88665544539999999998154611111111234569997338
Q 000858 1182 ALALA--------ENRASPPL---------------YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1238 (1251)
Q Consensus 1182 ~~a~~--------e~~~~~~~---------------~~~~~~r~LtmeDF~~Al~kv~pS~s~~~~~~~~~v~WndigG~ 1238 (1251)
..... +....+.. ......++|+++||..|+++++||++.+ .+..+.+|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHCC
T ss_conf 2144333310000000255654441000012123650003578708999999998679999999--99999999999746
Q ss_pred CC
Q ss_conf 87
Q 000858 1239 GG 1240 (1251)
Q Consensus 1239 ~~ 1240 (1251)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
Done!