Query 000859
Match_columns 1251
No_of_seqs 895 out of 8069
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:01:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000859.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_628-632//hhsearch_pdb/000859hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 774.6 43.2 734 19-861 3-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 625.7 35.0 652 76-831 79-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 537.9 40.6 608 86-842 18-637 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 537.2 37.7 266 59-324 4-285 (680)
5 4eco_A Uncharacterized protein 1.0 1 1 491.4 21.3 81 25-107 27-117 (636)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 485.1 35.7 161 94-254 23-189 (844)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 484.8 26.1 83 23-112 264-365 (876)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 482.4 36.1 157 96-252 34-192 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 481.8 33.6 534 110-833 26-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 472.3 30.5 171 79-252 19-194 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=774.57 Aligned_cols=734 Identities=32% Similarity=0.490 Sum_probs=516.5
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCC---CCCCCCCCC
Q ss_conf 06866789776999999999758799778789889999998630179949997379800477667888---788878889
Q 000859 19 SPGFVLCKDEELSVLLEIKKSFTADPENVLHAWNQSNQNLCTWRGITCGSSSARVVSLNLSGLSLAGS---ISPSLGRLQ 95 (1251)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~k~~~~~~~~~~~~sw~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~g~---~~~~l~~l~ 95 (1251)
.++.+.+.++|++||++||++++ ||. .+++|+. +++||.|.||+|+ .+||+.|+|++.++.|. ++++++.++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCC-CCCCCCC-CCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCC
T ss_conf 67656687899999999996678-962-1468789-9987688413878--99278987789986775576696573168
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 501998658988898674322667663886224454588875--35787555578812677889989865-654443422
Q 000859 96 SLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSNQLAGTIPT--QLGSLTSLRVMRIGDNWLSGSIPTSF-GNLVNLGTL 172 (1251)
Q Consensus 96 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L 172 (1251)
+|+.++++.+.+. .+|..++.+++|++|+|++|.++|.+|. .++++++|++|++++|.+.+..|..+ .++++|++|
T Consensus 78 ~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 0224678688867-870332457889989898985787078967872788999898968826774797785638899989
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 34567889999997---673344513321133356877844389888753330142368870222026445864654476
Q 000859 173 GLASCSLSGPIPPQ---FGQLSQLEELILQQNQLQGPIPAELGNCSSLSIFTAAENNLNGSIPAALGRLQNLQLLNLGNN 249 (1251)
Q Consensus 173 ~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 249 (1251)
++++|.+++..|.. +.++++|++|++++|.+.+..+. . .+++|+.|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~------------------------~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--S------------------------RCVNLEFLDVSSN 210 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T------------------------TCTTCCEEECCSS
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--C------------------------CCCCCCEEECCCC
T ss_conf 8979835885871556643589889898978803465784--5------------------------4786898989288
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 68887895536877665553447624686772323578735898015422499897424455337999027504676661
Q 000859 250 SLSGEIPSELGELSQLGYLNLMGNRLEGAIPRSFAKMGNLQSLDLSMNRLTGGIPEEFGNMGQLVFLVLSNNNISGSIPR 329 (1251)
Q Consensus 250 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~i~~ 329 (1251)
.+++.+|. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|.. .+++|++|++++|.+.+.+|.
T Consensus 211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCH
T ss_conf 27887711-126999998979488587816577744888898989888665716724--368789897917855772588
Q ss_pred CCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCC
Q ss_conf 0014633102444001001367895766778786588558735578651111234564899625643366510-002445
Q 000859 330 RICTNATSLEHLILAEIQLSGEIPVELSQCQSLKQLDLSNNTLNGTIPVELFQLVALTHLYLHNNSLVGSISP-FVANLS 408 (1251)
Q Consensus 330 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 408 (1251)
.++ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..++
T Consensus 288 ~~~------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 288 FLS------------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CSC------------------------TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred HHH------------------------HHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf 888------------------------44686889989689677842367755877667789788525737978872488
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCC-CCCHHHCCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 563787014556899733210000-0003202568102312577678--7756457604885557889954355877689
Q 000859 409 NLQELALYHNNFQGSLPREIGMLV-KLELLYLYDNHLSGQIPSEVGN--CSSLKWIDFFGNSFTGEIPTSIGRLKDLNFL 485 (1251)
Q Consensus 409 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~--l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 485 (1251)
+|++|++++|.+.+..|..+..++ +|+.|++++|.+++..+..+.. +++|++|++++|.+++.+|..+..+++|+.|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 88788484784376230989863227719986278747876766653324776189897784654248777568987989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCEEECCCCCCC
Q ss_conf 55577357886700015445876626888586459951001010156520378556677334441037771430255446
Q 000859 486 HLRQNELVGQIPASLGNCHQLIILDLADNKLSGGVPASFGFLQALEQLMLYNNSLEGNLPGSLINLRNLTRINFSKNRLN 565 (1251)
Q Consensus 486 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 565 (1251)
++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+.++++|+.|++++|++.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 89588466854677744998898989788154718978828777329990199513758878816998998975399518
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 61010146764101101257655578988777565755560267510036753223444566870277343889830002
Q 000859 566 GRIATLCSSHSFLSFDVTNNEFDHEIPPQLGNSPSLERLRLGNNKFIGKIPWTFGKIRELSLLDLSGNSLTGPIPTQLLM 645 (1251)
Q Consensus 566 ~~~~~l~~~~~l~~l~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 645 (1251)
+ .+|.+++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++..|..+..
T Consensus 504 ~-----------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 504 G-----------------------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp S-----------------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred C-----------------------CCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 9-----------------------68768856899998989789433748877708898998989888468827957860
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 57753898579946899863149976534112447311488830013644452552037321245682347987784511
Q 000859 646 CKKLSHIDLNNNLLSGAVPSWLGTLPQLGELKLSFNQFVGFLPRELFNCSKLLVLSLDGNMLNGSLPNEVGNLASLNVLT 725 (1251)
Q Consensus 646 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 725 (1251)
+..+..+++..+. +...+..+..... ..... ..+ .+.+..+..+..++.+..++
T Consensus 561 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~~-----~~~-----~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 561 QSGKIAANFIAGK---------------RYVYIKNDGMKKE-CHGAG-----NLL-----EFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp TTTCBCCSTTCSC---------------EEEEEECCSCCTT-CCSSE-----EEE-----ECTTCCGGGGGGGGGTCCSC
T ss_pred CCCHHHHHCCCCC---------------CCCCCCCCCCCCC-CCCCC-----CCC-----CCCCCCCHHHHCCCCCCCCC
T ss_conf 4212232013454---------------2111134443222-23322-----210-----01355632320023211001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 47876779987322545655556503751556660421000227899750278666799987674343307983688122
Q 000859 726 LSGNLLSGPIPPAIGRLSKLYELRLSNNSLNGVIPLEIGQLQNLQSILDLSHNNFTGQIPPSMGTLAKLEVLNLSHNQLV 805 (1251)
Q Consensus 726 ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~~l~ls~N~~~~~~p~~~~~l~~L~~L~l~~N~l~ 805 (1251)
++.|.+.+.+|..++.+++|+.||+++|++++.+|..|+.++.|+. |+|++|+++|.+|..++.+++|+.|+|++|+++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE-EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 1331004627433403356657978588015558778841415787-848688038878967847778998989788023
Q ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4783555301688937610366767557--4447899753368865779999789885
Q 000859 806 GELPSQLGEMSSLGKLNLSYNDLQGKLS--KQFSHWPAEAFEGNLHLCGSPLDHCNGL 861 (1251)
Q Consensus 806 ~~~p~~l~~l~~l~~l~l~~N~l~~~~~--~~~~~~~~~~~~~n~~~c~~~~~~c~~~ 861 (1251)
|.+|..+..+++|+.|++++|+++|.+| .+|..+++.+|.||+++||.|...|...
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCC
T ss_conf 8688677578878978796881556089960102489777569832108877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=625.69 Aligned_cols=652 Identities=34% Similarity=0.484 Sum_probs=474.0
Q ss_pred ECCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEE
Q ss_conf 0047766788878--8878889501998658988898674--32266766388622445458887535-78755557881
Q 000859 76 LNLSGLSLAGSIS--PSLGRLQSLIHLDLSSNSLTGPIPT--ALSNLSSLESLLLFSNQLAGTIPTQL-GSLTSLRVMRI 150 (1251)
Q Consensus 76 l~l~~~~l~g~~~--~~l~~l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L 150 (1251)
|++.+....|.++ +.++.+++|++|+|++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ +++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 22467868886787033245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 267788998986---56544434223456788999999767334451332113335687784438988875333014236
Q 000859 151 GDNWLSGSIPTS---FGNLVNLGTLGLASCSLSGPIPPQFGQLSQLEELILQQNQLQGPIPAELGNCSSLSIFTAAENNL 227 (1251)
Q Consensus 151 ~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 227 (1251)
++|.+++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+.+.+|. ++++++|+.|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf 79835885871556643589889898978803465784--5478689898928827887711-12699999897948858
Q ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCC
Q ss_conf 88702220264458646544766888789553687766555344762468677232357-87358980154224998974
Q 000859 228 NGSIPAALGRLQNLQLLNLGNNSLSGEIPSELGELSQLGYLNLMGNRLEGAIPRSFAKM-GNLQSLDLSMNRLTGGIPEE 306 (1251)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 306 (1251)
++..|..++.+++|+.|++++|.+++..|.. .+++|++|++++|.+.+.+|..+... ++|+.|++++|++.+..|..
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHH
T ss_conf 7816577744888898989888665716724--36878989791785577258888844686889989689677842367
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-C
Q ss_conf 244553379990275046766610014633102444001001367895766778786588558735578651111234-5
Q 000859 307 FGNMGQLVFLVLSNNNISGSIPRRICTNATSLEHLILAEIQLSGEIPVELSQCQSLKQLDLSNNTLNGTIPVELFQLV-A 385 (1251)
Q Consensus 307 l~~l~~L~~L~Ls~N~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~ 385 (1251)
+..+++|++|++++|.+.+.+|... +..+++|++|++++|.+.+..|..+..+. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~------------------------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDT------------------------LLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHH------------------------HTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHH------------------------HHCCCCCCEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 7558776677897885257379788------------------------7248888788484784376230989863227
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 648996256433665100024--455637870145568997332100000003202568102312577678775645760
Q 000859 386 LTHLYLHNNSLVGSISPFVAN--LSNLQELALYHNNFQGSLPREIGMLVKLELLYLYDNHLSGQIPSEVGNCSSLKWIDF 463 (1251)
Q Consensus 386 L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l 463 (1251)
|+.|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 71998627874787676665332477618989778465424877756898798989588466854677744998898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCHHHHHHCCCCCCCCC
Q ss_conf 48855578899543558776895557735788670001544587662688858645995100101015652037855667
Q 000859 464 FGNSFTGEIPTSIGRLKDLNFLHLRQNELVGQIPASLGNCHQLIILDLADNKLSGGVPASFGFLQALEQLMLYNNSLEGN 543 (1251)
Q Consensus 464 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 543 (1251)
++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 78815471897882877732999019951375887881699899897539951896876885689999898978943374
Q ss_pred CCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 73344410377714302554466101014676410110125765557898877756575556026751003675322344
Q 000859 544 LPGSLINLRNLTRINFSKNRLNGRIATLCSSHSFLSFDVTNNEFDHEIPPQLGNSPSLERLRLGNNKFIGKIPWTFGKIR 623 (1251)
Q Consensus 544 ~~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~l~~l~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 623 (1251)
.|..+.++++|+.|++++|++.+ .+|..+.....+..+.+..+.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g-----------------------~ip~~~~~~~~~~~~~~~~~~------------- 573 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNG-----------------------TIPAAMFKQSGKIAANFIAGK------------- 573 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES-----------------------BCCGGGGTTTTCBCCSTTCSC-------------
T ss_pred CCHHHCCCCCCCEEECCCCCCCC-----------------------CCCHHHHCCCCHHHHHCCCCC-------------
T ss_conf 88777088989989898884688-----------------------279578604212232013454-------------
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 45668702773438898300025775389857994689986314997653411244731148883001364445255203
Q 000859 624 ELSLLDLSGNSLTGPIPTQLLMCKKLSHIDLNNNLLSGAVPSWLGTLPQLGELKLSFNQFVGFLPRELFNCSKLLVLSLD 703 (1251)
Q Consensus 624 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 703 (1251)
+...+.++..... ....+ .+ -.+.+..+..+..+..+..+++.
T Consensus 574 --------------------------~~~~~~~~~~~~~-~~~~~---~~-------~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 574 --------------------------RYVYIKNDGMKKE-CHGAG---NL-------LEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp --------------------------EEEEEECCSCCTT-CCSSE---EE-------EECTTCCGGGGGGGGGTCCSCTT
T ss_pred --------------------------CCCCCCCCCCCCC-CCCCC---CC-------CCCCCCCCHHHHCCCCCCCCCCC
T ss_conf --------------------------2111134443222-23322---21-------00135563232002321100113
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCC
Q ss_conf 73212456823479877845114787677998732254565555650375155666042100022789975027866679
Q 000859 704 GNMLNGSLPNEVGNLASLNVLTLSGNLLSGPIPPAIGRLSKLYELRLSNNSLNGVIPLEIGQLQNLQSILDLSHNNFTGQ 783 (1251)
Q Consensus 704 ~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~~l~ls~N~~~~~ 783 (1251)
.|.+.+..|..+..+++|+.|+|++|++++.+|..++.++.|+.|+|++|++++.+|..|+.++.|+. |+|++|+++|.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~-LdLs~N~l~g~ 695 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGR 695 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE-EECCSSCCEEC
T ss_pred CCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE-EECCCCCCCCC
T ss_conf 31004627433403356657978588015558778841415787848688038878967847778998-98978802386
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCC
Q ss_conf 99876743433079836881224783555301688937610366-7675
Q 000859 784 IPPSMGTLAKLEVLNLSHNQLVGELPSQLGEMSSLGKLNLSYND-LQGK 831 (1251)
Q Consensus 784 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~l~l~~N~-l~~~ 831 (1251)
+|..+..+++|+.|++++|+++|.+|.. +.+..+....+.+|| ++|.
T Consensus 696 ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 8867757887897879688155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=537.92 Aligned_cols=608 Identities=23% Similarity=0.228 Sum_probs=268.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 87888788895019986589888986743226676638862244545888753578755557881267788998986565
Q 000859 86 SISPSLGRLQSLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSNQLAGTIPTQLGSLTSLRVMRIGDNWLSGSIPTSFGN 165 (1251)
Q Consensus 86 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 165 (1251)
.+|..+. +.+++|++++|.+.+..+.+|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+.+|++
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 2641248--88768889899778759788717876758878899648569778740667688889998567568545303
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC--CCCCCE
Q ss_conf 444342234567889999997673344513321133356877844389888753330142368870222026--445864
Q 000859 166 LVNLGTLGLASCSLSGPIPPQFGQLSQLEELILQQNQLQGPIPAELGNCSSLSIFTAAENNLNGSIPAALGR--LQNLQL 243 (1251)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~ 243 (1251)
+++|++|++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|+.|++++|.+++..+..+.. +++|+.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCE
T ss_conf 88889898989966853966741567888898989952466721112455677797458843652978862446663217
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 65447668887895536877665553447624686772323578735898015422499897424455337999027504
Q 000859 244 LNLGNNSLSGEIPSELGELSQLGYLNLMGNRLEGAIPRSFAKMGNLQSLDLSMNRLTGGIPEEFGNMGQLVFLVLSNNNI 323 (1251)
Q Consensus 244 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 323 (1251)
|++++|.+++..+..+..+++|+.| +++++.+
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L------------------------------------------------~l~~~~l 207 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGL------------------------------------------------FLNNVQL 207 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEE------------------------------------------------ECTTCCC
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHH------------------------------------------------HCCCCCC
T ss_conf 9888982565581555322344554------------------------------------------------3056646
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEEECCCCCCCCC
Q ss_conf 67666100146331024440010013678957667787865885587355786511112345--6489962564336651
Q 000859 324 SGSIPRRICTNATSLEHLILAEIQLSGEIPVELSQCQSLKQLDLSNNTLNGTIPVELFQLVA--LTHLYLHNNSLVGSIS 401 (1251)
Q Consensus 324 ~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~ 401 (1251)
........+ .. ...++|+.|++++|.+.+..+..+..+.. |+.|++++|.+.+..+
T Consensus 208 ~~~~~~~~~---------------------~~-l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 208 GPSLTEKLC---------------------LE-LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp HHHHHHHHH---------------------HH-HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred CHHHHHHHH---------------------HH-HHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 805677787---------------------77-53151008874577436468667514676778887787887675680
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 00024455637870145568997332100000003202568102312577678775645760488555788995435587
Q 000859 402 PFVANLSNLQELALYHNNFQGSLPREIGMLVKLELLYLYDNHLSGQIPSEVGNCSSLKWIDFFGNSFTGEIPTSIGRLKD 481 (1251)
Q Consensus 402 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 481 (1251)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++ + +.+.......+..+++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~-------------~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--L-------------ASLPKIDDFSFQWLKC 330 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------------------CCEECTTTTTTCTT
T ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCC--C-------------CCCCCCCHHHCCCCCC
T ss_conf 211674105685577885676586562678885577363313213333--3-------------5545438656246777
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCHHCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEC
Q ss_conf 768955577357886700015445876626888586--459951001010156520378556677334441037771430
Q 000859 482 LNFLHLRQNELVGQIPASLGNCHQLIILDLADNKLS--GGVPASFGFLQALEQLMLYNNSLEGNLPGSLINLRNLTRINF 559 (1251)
Q Consensus 482 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l 559 (1251)
|+.|++++|.+.+..+..|..+++|+.|++++|.++ ......|..+. .++|+.|++
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~----------------------~~~L~~L~L 388 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA----------------------HSPLHILNL 388 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT----------------------TSCCCEEEC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCC----------------------CCCCCEEEC
T ss_conf 8888798982687885574065687289887980144323532202455----------------------686766889
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf 255446610101467641011012576555789887775657555602675100367-5322344456687027734388
Q 000859 560 SKNRLNGRIATLCSSHSFLSFDVTNNEFDHEIPPQLGNSPSLERLRLGNNKFIGKIP-WTFGKIRELSLLDLSGNSLTGP 638 (1251)
Q Consensus 560 ~~N~l~~~~~~l~~~~~l~~l~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~ 638 (1251)
++|.+.+ ..|..+..+++|+.|++++|++.+.++ ..|..+++|+.|++++|.+++.
T Consensus 389 ~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 389 TKNKISK-----------------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp TTSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred CCCCCCE-----------------------ECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEE
T ss_conf 9997776-----------------------77544207788888867787575435755325754612784489975422
Q ss_pred CCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 9830002577538985799468--99863149976534112447311488830013644452552037321245682347
Q 000859 639 IPTQLLMCKKLSHIDLNNNLLS--GAVPSWLGTLPQLGELKLSFNQFVGFLPRELFNCSKLLVLSLDGNMLNGSLPNEVG 716 (1251)
Q Consensus 639 ~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 716 (1251)
.+..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|++.++.+..+..+++|+.|++++|+++...+..+
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 524 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN- 524 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS-
T ss_pred CHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC-
T ss_conf 7645500754310110146442256677645557878999899998776794463455346888588997300000004-
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98778451147876779987322545655556503751556660421000227899750278666799987674343307
Q 000859 717 NLASLNVLTLSGNLLSGPIPPAIGRLSKLYELRLSNNSLNGVIPLEIGQLQNLQSILDLSHNNFTGQIPPSMGTLAKLEV 796 (1251)
Q Consensus 717 ~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~~l~ls~N~~~~~~p~~~~~l~~L~~ 796 (1251)
.+..+..+..+++|+.|++++|+++...+..|+.++.|+. |++++|++++..+..+..+++|+.
T Consensus 525 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 525 ---------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI-IDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp ---------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ---------------CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE-EECCCCCCCCCCHHHHCCCCCCCE
T ss_conf ---------------6774142337998888889999788779777346667522-389999777679768378988888
Q ss_pred EECCCCCCCCCCCHHHH-HCCCCCCEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 98368812247835553-01688937610366767557--444789975
Q 000859 797 LNLSHNQLVGELPSQLG-EMSSLGKLNLSYNDLQGKLS--KQFSHWPAE 842 (1251)
Q Consensus 797 L~l~~N~l~~~~p~~l~-~l~~l~~l~l~~N~l~~~~~--~~~~~~~~~ 842 (1251)
|+|++|++++..+..+. .+++|+.+++++||+.+.++ ..|..|-..
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred EECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9899996870596683011466577983189702577668999999873
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=537.21 Aligned_cols=266 Identities=25% Similarity=0.271 Sum_probs=180.2
Q ss_pred CCCCCEEECCC---------CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 86301799499---------973798004776678887888788895019986589888986743226676638862244
Q 000859 59 CTWRGITCGSS---------SARVVSLNLSGLSLAGSISPSLGRLQSLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSN 129 (1251)
Q Consensus 59 c~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n 129 (1251)
|.+..|.|+.. ..+++.|+++++.+.+..+..++.++.|++|++++|.+.+..|.+++++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 54588875357875555788126778899898656544434223456788999999767334451332113335687784
Q 000859 130 QLAGTIPTQLGSLTSLRVMRIGDNWLSGSIPTSFGNLVNLGTLGLASCSLSGPIPPQFGQLSQLEELILQQNQLQGPIPA 209 (1251)
Q Consensus 130 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 209 (1251)
.+++..+..|+++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|+.+++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843652978
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 438--988875333014236887022202644586465447668887895536---877665553447624686772323
Q 000859 210 ELG--NCSSLSIFTAAENNLNGSIPAALGRLQNLQLLNLGNNSLSGEIPSELG---ELSQLGYLNLMGNRLEGAIPRSFA 284 (1251)
Q Consensus 210 ~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~ 284 (1251)
.+. .+++|+.|++++|.+++..+..+..+.+|+.|+++++.+.......+. ..++|+.|++++|.+.+..+..|.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHH
T ss_conf 86244666321798889825655815553223445543056646805677787775315100887457743646866751
Q ss_pred CCCC--CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 5787--358980154224998974244553379990275046
Q 000859 285 KMGN--LQSLDLSMNRLTGGIPEEFGNMGQLVFLVLSNNNIS 324 (1251)
Q Consensus 285 ~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 324 (1251)
.++. |+.|++++|++.+..+..+..+++|++|++++|.+.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 467677888778788767568021167410568557788567
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=491.42 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCC---CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89776999999999758799778-------78988999999863---017994999737980047766788878887888
Q 000859 25 CKDEELSVLLEIKKSFTADPENV-------LHAWNQSNQNLCTW---RGITCGSSSARVVSLNLSGLSLAGSISPSLGRL 94 (1251)
Q Consensus 25 ~~~~~~~~l~~~k~~~~~~~~~~-------~~sw~~~~~~~c~w---~gv~C~~~~~~v~~l~l~~~~l~g~~~~~l~~l 94 (1251)
....|+.||.+|++++..+.+.. ..+|+.+ ++||.| .||+|+.. +||+.|+|.++++.|.+|++++.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCC
T ss_conf 6778899999999975899745477677657887779-98000147798487678-978899842766577288578568
Q ss_pred CCCCEEECCCCCC
Q ss_conf 9501998658988
Q 000859 95 QSLIHLDLSSNSL 107 (1251)
Q Consensus 95 ~~L~~L~l~~n~~ 107 (1251)
++|++|+|++|.+
T Consensus 105 ~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 105 TELEVLALGSHGE 117 (636)
T ss_dssp TTCCEEESCCGGG
T ss_pred CCCEEEECCCCCC
T ss_conf 4511898768851
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=485.12 Aligned_cols=161 Identities=27% Similarity=0.305 Sum_probs=86.6
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 895019986589888986743226676638862244545888-7535787555578812677889989865654443422
Q 000859 94 LQSLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSNQLAGTI-PTQLGSLTSLRVMRIGDNWLSGSIPTSFGNLVNLGTL 172 (1251)
Q Consensus 94 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 172 (1251)
.+.+++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.+..|.+|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 99868888877867832966776621370886789977444197785378778888798995853197671578665870
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCHHHHCCC--CCCCEEECC
Q ss_conf 34567889999997--6733445133211333568778-443898887533301423688702220264--458646544
Q 000859 173 GLASCSLSGPIPPQ--FGQLSQLEELILQQNQLQGPIP-AELGNCSSLSIFTAAENNLNGSIPAALGRL--QNLQLLNLG 247 (1251)
Q Consensus 173 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~ 247 (1251)
+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|+.|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECC
T ss_conf 17678897340467645566799988898786423256655763889898989898477667887535567750357897
Q ss_pred CCCCCCC
Q ss_conf 7668887
Q 000859 248 NNSLSGE 254 (1251)
Q Consensus 248 ~n~l~~~ 254 (1251)
.|.+.+.
T Consensus 183 ~n~l~~~ 189 (844)
T 3j0a_A 183 ANSLYSR 189 (844)
T ss_dssp CSBSCCC
T ss_pred CCCCCCC
T ss_conf 8866655
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=484.75 Aligned_cols=83 Identities=18% Similarity=0.369 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCC--CCC------------CCEEECCCCCEEEEECCCCCCCC
Q ss_conf 678977699999999975879977878988999----999--863------------01799499973798004776678
Q 000859 23 VLCKDEELSVLLEIKKSFTADPENVLHAWNQSN----QNL--CTW------------RGITCGSSSARVVSLNLSGLSLA 84 (1251)
Q Consensus 23 ~~~~~~~~~~l~~~k~~~~~~~~~~~~sw~~~~----~~~--c~w------------~gv~C~~~~~~v~~l~l~~~~l~ 84 (1251)
+++..+|+.||++||+++. +| +|+.++ .+| |.| .||+|+. .+||+.|+|.++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred CCCCHHHHHHHHHHHHHCC-CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCC
T ss_conf 5463178999999999737-99-----9886898653367764034666545335768428369-997989987247899
Q ss_pred CCCCCCCCCCCCCCEEEC-CCCCCCCCCC
Q ss_conf 887888788895019986-5898889867
Q 000859 85 GSISPSLGRLQSLIHLDL-SSNSLTGPIP 112 (1251)
Q Consensus 85 g~~~~~l~~l~~L~~L~l-~~n~~~~~~p 112 (1251)
|.+|++++.|++|+.|+| ++|.+.|..|
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~ 365 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRL 365 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTC
T ss_pred CCCCHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 94855774155562843012563356664
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=482.45 Aligned_cols=157 Identities=21% Similarity=0.110 Sum_probs=86.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50199865898889867432266766388622445458887535787555578812677889989865654443422345
Q 000859 96 SLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSNQLAGTIPTQLGSLTSLRVMRIGDNWLSGSIPTSFGNLVNLGTLGLA 175 (1251)
Q Consensus 96 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 175 (1251)
.+++|++++|.+++..|.+|+++++|++|+|++|.+.+..|..|+++++|++|++++|++++..|.+|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC--EEECCCCCCC
Q ss_conf 6788999999767334451332113335687784438988875333014236887022202644586--4654476688
Q 000859 176 SCSLSGPIPPQFGQLSQLEELILQQNQLQGPIPAELGNCSSLSIFTAAENNLNGSIPAALGRLQNLQ--LLNLGNNSLS 252 (1251)
Q Consensus 176 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~ 252 (1251)
+|.+++..+..|+++++|++|++++|++.+.....+..+++|+.|++++|.+++..+..++.+++|+ .|++++|.++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 2676657810122378223898879834114765456876568777656844554965633221564038966798147
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=481.79 Aligned_cols=534 Identities=23% Similarity=0.205 Sum_probs=250.1
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86743226676638862244545888753578755557881267788998986565444342234567889999997673
Q 000859 110 PIPTALSNLSSLESLLLFSNQLAGTIPTQLGSLTSLRVMRIGDNWLSGSIPTSFGNLVNLGTLGLASCSLSGPIPPQFGQ 189 (1251)
Q Consensus 110 ~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 189 (1251)
.+|..+. ..+++|+|++|.+++..|..|+++++|++|++++|++.+..|.+|+++++|++|++++|.+++..|..|++
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 2867789--86758981587347179667256766528978898355248511368433676448898565458655234
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 34451332113335687784438988875333014236887022202644586465447668887895536877665553
Q 000859 190 LSQLEELILQQNQLQGPIPAELGNCSSLSIFTAAENNLNGSIPAALGRLQNLQLLNLGNNSLSGEIPSELGELSQLGYLN 269 (1251)
Q Consensus 190 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 269 (1251)
+++|++|++++|++++..+..+++ +++|+.|++++|.+++.....+..+++|++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHN------------------------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTT------------------------CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCCHHCC------------------------CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 421537652126766578101223------------------------78223898879834114765456876568777
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCHH
Q ss_conf 447624686772323578735--898015422499897424455337999027504676661001463310244400100
Q 000859 270 LMGNRLEGAIPRSFAKMGNLQ--SLDLSMNRLTGGIPEEFGNMGQLVFLVLSNNNISGSIPRRICTNATSLEHLILAEIQ 347 (1251)
Q Consensus 270 L~~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~~~~L~~L~L~~n~ 347 (1251)
+++|.+++..+..|..+++|+ .|++++|.+.+..+..+.. ..|+.|++++|... +.
T Consensus 160 L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~------------------ 217 (606)
T 3t6q_A 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LV------------------ 217 (606)
T ss_dssp CCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HH------------------
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHHH---HH------------------
T ss_conf 656844554965633221564038966798147548667300-10013556772667---77------------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 13678957667787865885587355786511112345648996256433665100024455637870145568997332
Q 000859 348 LSGEIPVELSQCQSLKQLDLSNNTLNGTIPVELFQLVALTHLYLHNNSLVGSISPFVANLSNLQELALYHNNFQGSLPRE 427 (1251)
Q Consensus 348 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 427 (1251)
.+..+..+....+....+. .+.... ..+..
T Consensus 218 -------~~~~l~~~~l~~l~~~~~~-----------------------------------~~~~~~--------i~~~~ 247 (606)
T 3t6q_A 218 -------IFKGLKNSTIQSLWLGTFE-----------------------------------DMDDED--------ISPAV 247 (606)
T ss_dssp -------HHHHTTTCEEEEEECCCCT-----------------------------------TSCCCC--------CCGGG
T ss_pred -------HHHHCCCCCHHHEECHHHC-----------------------------------CCCCCC--------CCHHH
T ss_conf -------7651335644220020110-----------------------------------264122--------68667
Q ss_pred HHCCC--CCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 10000--0003202568102312577678775645760488555788995435587768955577357886700015445
Q 000859 428 IGMLV--KLELLYLYDNHLSGQIPSEVGNCSSLKWIDFFGNSFTGEIPTSIGRLKDLNFLHLRQNELVGQIPASLGNCHQ 505 (1251)
Q Consensus 428 ~~~l~--~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 505 (1251)
+..+. +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 43032075059994457658557777445667888956288267-77821416546888977168768676023301576
Q ss_pred CCEEECCCCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 87662688858645995100101015652037855667733444103777143025544661010146764101101257
Q 000859 506 LIILDLADNKLSGGVPASFGFLQALEQLMLYNNSLEGNLPGSLINLRNLTRINFSKNRLNGRIATLCSSHSFLSFDVTNN 585 (1251)
Q Consensus 506 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~l~~~~~l~~l~l~~n 585 (1251)
|+.|++++|.+....+ +..+..+++|+.|++++|.+.+..
T Consensus 327 L~~L~l~~n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~----------------- 366 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELG-----------------------TGCLENLENLRELDLSHDDIETSD----------------- 366 (606)
T ss_dssp CSEEECCSCSSCCBCC-----------------------SSTTTTCTTCCEEECCSSCCCEEE-----------------
T ss_pred CCEEECCCCCCCCCCC-----------------------HHHHHCCCCCCEEECCCCCCCCCC-----------------
T ss_conf 8988898997444346-----------------------245506675898878899666456-----------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 65557898877756575556026751003675322344456687027734388983-00025775389857994689986
Q 000859 586 EFDHEIPPQLGNSPSLERLRLGNNKFIGKIPWTFGKIRELSLLDLSGNSLTGPIPT-QLLMCKKLSHIDLNNNLLSGAVP 664 (1251)
Q Consensus 586 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 664 (1251)
..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..+
T Consensus 367 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 367 ----CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp ----ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ----CCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCH
T ss_conf ----7522105678889898989967757888734774577687888867775652124176558889898985577687
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 31499765341124473114888300136444525520373212456823479877845114787677998732254565
Q 000859 665 SWLGTLPQLGELKLSFNQFVGFLPRELFNCSKLLVLSLDGNMLNGSLPNEVGNLASLNVLTLSGNLLSGPIPPAIGRLSK 744 (1251)
Q Consensus 665 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~ 744 (1251)
..++.+++|++|++++|++.+... ..+..+..+++|++|++++|++++..|..++.+++
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNI---------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEE---------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCC---------------------CCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 787378878889898998885434---------------------54312404887668879999667068646326567
Q ss_pred CCEEECCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 55565037515566604210002278997502786667999876743433079836881224783555301688937610
Q 000859 745 LYELRLSNNSLNGVIPLEIGQLQNLQSILDLSHNNFTGQIPPSMGTLAKLEVLNLSHNQLVGELPSQLGEMSSLGKLNLS 824 (1251)
Q Consensus 745 L~~L~l~~N~l~~~~~~~~~~l~~l~~~l~ls~N~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~l~~l~l~ 824 (1251)
|+.|++++|++++..|. .+..++.| .|++++|++++..|..+..+++|+.++++
T Consensus 502 L~~L~Ls~N~l~~~~~~-------------------------~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIE-------------------------ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCEEECCSSCCCGGGGG-------------------------GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CCEEECCCCCCCCCCHH-------------------------HHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 88898989806868966-------------------------84756651-89876894142687662567787889677
Q ss_pred CCCCCCCCC
Q ss_conf 366767557
Q 000859 825 YNDLQGKLS 833 (1251)
Q Consensus 825 ~N~l~~~~~ 833 (1251)
+||+.+.++
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCCCCCCC
T ss_conf 998616677
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=472.33 Aligned_cols=171 Identities=22% Similarity=0.222 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 77667888788878889501998658988898674322667663886224454588875357875555788126778899
Q 000859 79 SGLSLAGSISPSLGRLQSLIHLDLSSNSLTGPIPTALSNLSSLESLLLFSNQLAGTIPTQLGSLTSLRVMRIGDNWLSGS 158 (1251)
Q Consensus 79 ~~~~l~g~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 158 (1251)
.+.++. .+|..+. +.+++|++++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++.
T Consensus 19 ~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 19 MDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCCCCC-CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCC
T ss_conf 688845-1898888--8767887888975773754555776674886887736643977730601068867879856304
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC
Q ss_conf 89865654443422345678899999976733445133211333568-77844389888753330142368870222026
Q 000859 159 IPTSFGNLVNLGTLGLASCSLSGPIPPQFGQLSQLEELILQQNQLQG-PIPAELGNCSSLSIFTAAENNLNGSIPAALGR 237 (1251)
Q Consensus 159 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 237 (1251)
.|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|+++++|+.|++++|.+++..+..++.
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHH
T ss_conf 85220786537888703775554451134898877989687885232530686732677778876688531057334121
Q ss_pred CCCCC----EEECCCCCCC
Q ss_conf 44586----4654476688
Q 000859 238 LQNLQ----LLNLGNNSLS 252 (1251)
Q Consensus 238 l~~L~----~L~L~~n~l~ 252 (1251)
+++|+ .|++++|.++
T Consensus 176 l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp HHHCTTCCCEEECTTCCCC
T ss_pred HHCCCCCCCEEECCCCCCC
T ss_conf 2034200243004689753
Done!