BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000860
(1250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 18/203 (8%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQED 744
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P +++ E++ F L K+ +QR V EV+ L H L P + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA------HLLDRKPKA--LSG 136
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT-GRTVVCTIHQPSI 863
QR+R+ I LVA PS+ +DEP S LD GRT++ H +
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 864 EIFEAFDELLLMKRGGRVIYGGK 886
E D+++++ GRV GK
Sbjct: 196 EAMTLADKIVVLD-AGRVAQVGK 217
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
+ +SGGQ++RV G +V +DE + LD++ Q+ + + +H+ ++ +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRTMIYV 190
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237
E L D +V+L G + G E+ +
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 18/203 (8%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQED 744
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P +++ E++ F L K+ +QR V EV+ L H L P + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA------HLLDRKPKA--LSG 136
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT-GRTVVCTIHQPSI 863
QR+R+ I LVA PS+ +DEP S LD GRT++ H +
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 864 EIFEAFDELLLMKRGGRVIYGGK 886
E D+++++ GRV GK
Sbjct: 196 EAMTLADKIVVLD-AGRVAQVGK 217
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
+ +SGGQ++RV G +V +DE + LD++ Q+ + + +H+ ++ +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRTMIYV 190
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237
E L D +V+L G + G E+ +
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +V+ F G + +VG +G+GKTTL+ +LAG G+I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 737 SGYVEQEDVHSPQV---TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
GYV Q S Q+ T+EE + FS + E +R +++V+ LV L L A
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSLEIMGLDESEMRKR---IKKVLELVGLSGLAAA- 136
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRT 853
LS Q++RL IA L + + +DEP S LD + + G+
Sbjct: 137 ----DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRG 878
++ H+ +E + D +L + G
Sbjct: 193 IILVTHE--LEYLDDMDFILHISNG 215
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 48/235 (20%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT-DNHIAE 61
+++G GSGK+TLL LAG L +G I +G D F +++ Y+ Q + I
Sbjct: 41 VVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG 96
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
TV E + F+ G ++S E + I+
Sbjct: 97 ATVEEDVAFSLEIMGLDES-----------EMRKRIKK---------------------- 123
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
VL ++GL + ++ L +SGGQK+R+ M+ + L +DE + LD +
Sbjct: 124 --VLELVGL----SGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+I + + + ++ + L+ E + D ++ +S+G + + G E +E
Sbjct: 177 REIFQVLESLKNEGKG---IILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 18/203 (8%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQED 744
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P +++ E++ F L K+ +QR V EV+ L H L P + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA------HLLDRKPKA--LSG 136
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT-GRTVVCTIHQPSI 863
QR+R+ I LVA PS+ +D+P S LD GRT++ H +
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 864 EIFEAFDELLLMKRGGRVIYGGK 886
E D+++++ GRV GK
Sbjct: 196 EAMTLADKIVVLD-AGRVAQVGK 217
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
+ +SGGQ++RV G +V +D+ + LD++ Q+ + + +H+ ++ +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM-RIEISRLHKRLGRTMIYV 190
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237
E L D +V+L G + G E+ +
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 28/254 (11%)
Query: 642 IMPFHPLTMTFHNISYYVDTPQA-MRSKGIH-----EKKLQLLSNVSGIFSPGVLTALVG 695
I+ P +F + D Q + K IH K++Q+L ++ G ALVG
Sbjct: 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 696 SSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQEDVHSPQVTI 752
+SG GK+T + ++ ++ ++G + I G I G V QE V TI
Sbjct: 424 NSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTI 480
Query: 753 EESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRH---ALVGSPGSFGLSTEQRK 808
E N+R +E ++ D+ + V+E + + L H LVG G+ LS Q++
Sbjct: 481 AE------NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA-QLSGGQKQ 533
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSI----E 864
R+ IA LV NP I+ +DE TS LD + GRT + H+ S +
Sbjct: 534 RIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 865 IFEAFDELLLMKRG 878
+ FD +++++G
Sbjct: 593 VIAGFDGGVIVEQG 606
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 26/227 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +S G ALVGSSG GK+T++ +L + + G + + G +Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 737 S---GYVEQEDVHSPQVTIEESLWFSANLRLP--KEISKDQR----HEFVEEVMSLVELD 787
G V QE + +I E++ + N R+ +EI + + H+F++ L
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID------SLP 1158
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNT 847
+ VG G+ LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1159 DKYNTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDK 1216
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
GRT + H+ S I A +L+++ + G+V + G H Q++
Sbjct: 1217 AREGRTCIVIAHRLST-IQNA--DLIVVIQNGKV---KEHGTHQQLL 1257
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAE 61
L+G G GKST++ L D +GS+ +G E+ + VQ RA I + + +
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
++ E + + G N +Y +++ R KE +I + ID S+
Sbjct: 1121 CSIAENIAY-----GDNSRVVSY-EEIVRAAKEANI--HQFID-------------SLPD 1159
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
Y +T VG + + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1160 KY-----------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
K V+ + + ++ T + D +V++ +G + G ++L
Sbjct: 1208 ----KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 50/237 (21%)
Query: 4 LLGPPGSGKST---LLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
L+G G GKST L+ L LDG ++ +G ++ V+ IG
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDG------MVSIDGQDIRTINVRYLREIIG------- 467
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+ +E + FA T E R+ R + +D KA K + +
Sbjct: 468 -VVSQEPVLFAT----------------TIAENIRYGREDVTMDEIEKAV-----KEANA 505
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRG--VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
D+++ L DT+VG RG +SGGQK+R+ +V K L +DE ++ LD+
Sbjct: 506 YDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ +V+ + + T ++A T D + G +V QG E++
Sbjct: 560 ESE-AVVQAALDKAREGRTTIVIA---HRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 28/254 (11%)
Query: 642 IMPFHPLTMTFHNISYYVDTPQA-MRSKGIH-----EKKLQLLSNVSGIFSPGVLTALVG 695
I+ P +F + D Q + K IH K++Q+L ++ G ALVG
Sbjct: 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 696 SSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQEDVHSPQVTI 752
+SG GK+T + ++ ++ ++G + I G I G V QE V TI
Sbjct: 424 NSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTI 480
Query: 753 EESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRH---ALVGSPGSFGLSTEQRK 808
E N+R +E ++ D+ + V+E + + L H LVG G+ LS Q++
Sbjct: 481 AE------NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA-QLSGGQKQ 533
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSI----E 864
R+ IA LV NP I+ +DE TS LD + GRT + H+ S +
Sbjct: 534 RIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 865 IFEAFDELLLMKRG 878
+ FD +++++G
Sbjct: 593 VIAGFDGGVIVEQG 606
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 26/227 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +S G ALVGSSG GK+T++ +L + + G + + G +Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 737 S---GYVEQEDVHSPQVTIEESLWFSANLRLP--KEISKDQR----HEFVEEVMSLVELD 787
G V QE + +I E++ + N R+ +EI + + H+F++ L
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID------SLP 1158
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNT 847
+ VG G+ LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1159 DKYNTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDK 1216
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
GRT + H+ S I A +L+++ + G+V + G H Q++
Sbjct: 1217 AREGRTCIVIAHRLST-IQNA--DLIVVIQNGKV---KEHGTHQQLL 1257
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAE 61
L+G G GKST++ L D +GS+ +G E+ + VQ RA I + + +
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
++ E + + G N +Y +++ R KE +I + ID S+
Sbjct: 1121 CSIAENIAY-----GDNSRVVSY-EEIVRAAKEANI--HQFID-------------SLPD 1159
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
Y +T VG + + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1160 KY-----------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
K V+ + + ++ T + D +V++ +G + G ++L
Sbjct: 1208 ----KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 50/237 (21%)
Query: 4 LLGPPGSGKST---LLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
L+G G GKST L+ L LDG ++ +G ++ V+ IG
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDG------MVSIDGQDIRTINVRYLREIIG------- 467
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+ +E + FA T E R+ R + +D KA K + +
Sbjct: 468 -VVSQEPVLFAT----------------TIAENIRYGREDVTMDEIEKAV-----KEANA 505
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRG--VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
D+++ L DT+VG RG +SGGQK+R+ +V K L +DE ++ LD+
Sbjct: 506 YDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ +V+ + + T ++A T D + G +V QG E++
Sbjct: 560 ESE-AVVQAALDKAREGRTTIVIA---HRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFA 734
L+N++ G AL+G SG+GK+TL+ +AG + T G I D K ++ P +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEF---VEEVMSLVELDSLRH 791
R G V Q P +T+ + N+ P E+ K R E V EV ++ +D L +
Sbjct: 75 RNVGLVFQNWALYPHMTVYK------NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN 128
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ LS Q++R+ IA LV P ++ +DEP S LD
Sbjct: 129 RY-----PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 45/232 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ-RASAYIGQTDNHIAEL 62
LLGP GSGKSTLL +AG SG I ++ ++ E + R + Q +
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV + + F + A P EID K V H D
Sbjct: 91 TVYKNIAFPLELRKA---------------------PREEIDK--KVREVAKMLH---ID 124
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+LN L SGGQ++RV +V + L +DE + LD+
Sbjct: 125 KLLNRYPWQL--------------SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL 170
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
++ ++ ++ T + + E + D + ++ +G ++ G EV
Sbjct: 171 EVRAELKRLQKELGITTVY-VTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 2 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 49 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 104
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 105 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 157
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ H+ S + D +++M++ G
Sbjct: 158 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEK-G 213
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 214 KIVEQGK 220
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I +RN H+
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNM-HK 184
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 185 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 55 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 111 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 163
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ H+ S + D +++M++ G
Sbjct: 164 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEK-G 219
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 220 KIVEQGK 226
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I +RN H+
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNM-HK 190
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 4 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 50
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 51 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 106
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 107 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 159
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ H+ S + D +++M++ G
Sbjct: 160 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEK-G 215
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 216 KIVEQGK 222
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I++ +H+
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN----MHK 186
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 55 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 111 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 163
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ D+ TS LD + + GRTV+ H+ S + D +++M++ G
Sbjct: 164 PKILIFDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEK-G 219
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 220 KIVEQGK 226
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L D+ ++ LD + I +RN H+
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI---MRNM-HK 190
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
K++ + VS G AL+G SG GKTT + +LAG + T G I D+ ++ P +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
R G V Q P +T+ E++ F R ISKD+ + V E+ + +D+L
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNL- 126
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
L P LS Q++R+ +A LV P ++ DEP S LD
Sbjct: 127 --LDRKPTQ--LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 51/265 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ-RASAYIGQTDNHIAEL 62
LLGP G GK+T LL LAG SG I ++ +++ + R + Q +
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHM 90
Query: 63 TVRETLDFAARCQG-ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
TV E + F R + + D + ++ R
Sbjct: 91 TVFENIAFPLRARRISKDEVEKRVVEIAR------------------------------- 119
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
L D ++ + + +SGGQ++RV +V K L DE + LD++
Sbjct: 120 ---------KLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE----F 237
+ +++ ++ T++ + E + + + + G LV G EV +
Sbjct: 170 MIMRAEIKHLQQELGITSVY-VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228
Query: 238 FESLGFRLPPRKGVADFLQEVTSKK 262
F + PP + DF V +K+
Sbjct: 229 FVASFIGNPPTNFLRDFSVSVENKQ 253
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG +G+GK+TL +
Sbjct: 4 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRAGSGKSTLTKL 50
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 51 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 106
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 107 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 159
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ H+ S + D +++M++ G
Sbjct: 160 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEK-G 215
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 216 KIVEQGK 222
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I++ +H+
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN----MHK 186
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPK 728
EKK L NVS + + G + G++G+GK+TL+ ++AG IE GD+ G K
Sbjct: 21 EKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERK 73
Query: 729 EQSTFARISGYVEQ--EDVHSPQVTIEESLWFSANL---RLPKEISKDQRHEFVEEVMSL 783
+ R G Q ED + +E + N R P + K + EFV
Sbjct: 74 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK-KAMEFVG----- 127
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXX 843
++ DS + + F LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 128 LDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 182
Query: 844 XXNTVDTGRTVVCTIHQPSIE-IFEAFDELLLMKRGGRVIYGGKL 887
G+TV+ H IE + D ++++++G +V G ++
Sbjct: 183 VEKWKTLGKTVILISH--DIETVINHVDRVVVLEKGKKVFDGTRM 225
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 49/240 (20%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQR--ASAYIGQTDNHIA 60
L+ G GSGKSTLL +AG ++ SG + Y+G ++++R A+ D A
Sbjct: 39 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E E +FA ++ P+ + +K +
Sbjct: 96 ERVFDEV------------AFAV-----------KNFYPDRDPVPLVKKA---------- 122
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ +GLD S + +SGG+K+RV +IV L +DE GLD
Sbjct: 123 ----MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPET-FELFDDLVLLSDGYLVYQGPRAEVLEFFE 239
+++ V + + T + L+ ET D +V+L G V+ G R E LE ++
Sbjct: 176 KTDLLRIVEKW-KTLGKTVI--LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 2 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 49 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 104
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 105 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 157
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ I + + D +++M++ G
Sbjct: 158 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVI--IIAARLSTVKNADRIIVMEK-G 213
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 214 KIVEQGK 220
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I +RN H+
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNM-HK 184
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 185 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 38/247 (15%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P +L N++ G + +VG SG+GK+TL +
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 708 LAGRKTGGYI--EGDIKISGYP---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANL 762
+ YI G + I G+ + + R G V Q++V + I+ + +
Sbjct: 55 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110
Query: 763 RLPKEISKDQ---RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+ K I + H+F+ E L + +VG G+ GLS QR+R+ IA LV N
Sbjct: 111 SVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNN 163
Query: 820 PSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
P I+ DE TS LD + + GRTV+ I + + D +++M++ G
Sbjct: 164 PKILIFDEATSALD-YESEHVIMRNMHKICKGRTVI--IIAARLSTVKNADRIIVMEK-G 219
Query: 880 RVIYGGK 886
+++ GK
Sbjct: 220 KIVEQGK 226
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
+T+VG E G+SGGQ++R+ +V K L DE ++ LD + I +RN H+
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNM-HK 190
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ + ++ T + D ++++ G +V QG E+L ESL
Sbjct: 191 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPK 728
EKK L NVS + + G + G++G+GK+TL+ ++AG IE GD+ G K
Sbjct: 19 EKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERK 71
Query: 729 EQSTFARISGYVEQ--EDVHSPQVTIEESLWFSANL---RLPKEISKDQRHEFVEEVMSL 783
+ R G Q ED + +E + N R P + K + EFV
Sbjct: 72 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK-KAMEFVG----- 125
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXX 843
++ DS + + F LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 126 LDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 844 XXNTVDTGRTVVCTIHQPSIE-IFEAFDELLLMKRGGRVIYGGKL 887
G+TV+ H IE + D ++++++G +V G ++
Sbjct: 181 VEKWKTLGKTVILISH--DIETVINHVDRVVVLEKGKKVFDGTRM 223
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 49/240 (20%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQR--ASAYIGQTDNHIA 60
L+ G GSGKSTLL +AG ++ SG + Y+G ++++R A+ D A
Sbjct: 37 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E E +FA ++ P+ + +K +
Sbjct: 94 ERVFDEV------------AFAV-----------KNFYPDRDPVPLVKKA---------- 120
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ +GLD S + +SGG+K+RV +IV L +DE GLD
Sbjct: 121 ----MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPET-FELFDDLVLLSDGYLVYQGPRAEVLEFFE 239
+++ V + + T + L+ ET D +V+L G V+ G R E LE ++
Sbjct: 174 KTDLLRIVEKW-KTLGKTVI--LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST 732
+++ L N++ G ALVG SG+GK+T+ ++ + EG I + G+ + T
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYT 411
Query: 733 FARISGYVE--QEDVHSPQVTIEESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSL 789
A + V ++VH T+ ++ ++ +E I + R + + ++ ++D+
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNG 469
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVD 849
++G G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 470 LDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQ 527
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDY 897
RT + H+ S E DE+++++ G V + G HS+++ +
Sbjct: 528 KNRTSLVIAHRLS--TIEQADEIVVVEDGIIV----ERGTHSELLAQH 569
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 47/236 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAE 61
L+G GSGKST+ + D + G I +G +L E+ + R + + H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
TV AN+ A ++ +R + E R +D K
Sbjct: 431 DTV------------ANNIAYARTEEYSREQIEEAARMAYAMDFINK------------- 465
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
+D DT++G GV SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 466 --------MDNGLDTIIGEN---GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ I + Q + T+L ++ T E D++V++ DG +V +G +E+L
Sbjct: 515 SERAIQAALDEL--QKNRTSL--VIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKI 723
SK + K+ L NV+ G ++G SGAGKTT M ++AG TG D +
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
Query: 724 SG-----YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFV 777
+ P E R G V Q P +T E++ F N+++ SK++ + V
Sbjct: 70 ASNGKLIVPPED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKM----SKEEIRKRV 121
Query: 778 EEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXX 837
EEV ++++ H L P LS Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 122 EEVAKILDI---HHVLNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 838 XXXXXXXXNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
G T++ H P+ +IF D + ++ +G V G
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
R +SG Q++RV +V L +DE + LD+ V+ ++ T L+ +
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVV 197
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQG 229
P + F + D + +L G LV G
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L N++ G ALVG SG+GK+T+ ++ + EG+I + G+ + T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 738 GYVE--QEDVHSPQVTIEESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRHALV 794
V ++VH T+ ++ ++ + +E I + R + + ++ ++D+ ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVI 474
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G G LS QR+R+ IA L+ + I+ +DE TS LD + + RT
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQKNRTS 532
Query: 855 VCTIHQPSIEIFEAFDELLLMKRG 878
+ H+ S E DE+++++ G
Sbjct: 533 LVIAHRLS--TIEKADEIVVVEDG 554
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 49/238 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAE 61
L+G GSGKST+ + D + G I +G +L E+ + R + + H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
TV + +A E++ R E A M
Sbjct: 431 DTVANNIAYA--------------------RTEQYSREQIEEAARMA------------- 457
Query: 122 DYVLNVLG-LDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
Y ++ + +D DTV+G GV SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 458 -YAMDFINKMDNGLDTVIGEN---GVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ I + Q + T+L ++ T E D++V++ DG +V +G ++LE
Sbjct: 514 ESERAIQAALDEL--QKNRTSL--VIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 23/219 (10%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG--YIEGDIKISGYP 727
E+ + L NV+ G +++G SG+GK+T+++++ + T G YI+ +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLD 73
Query: 728 KEQSTFARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
++ T R G+V Q+ P +T E++ + +S ++R + E + + E
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
L+ R A P LS Q++R+ IA L NP II D+PT LD
Sbjct: 134 LEE-RFA-NHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 846 N-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883
+ G+TVV H ++ F G R+IY
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 27/209 (12%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARIS-GYVEQE- 743
G +TA++G +G GK+TL G + + G I D K Y ++ R S G V Q+
Sbjct: 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93
Query: 744 DVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSLR----HALVGSPG 798
D ++ + + F A N++LP+ D+ + V+ + ++ L+ H L
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPE----DEIRKRVDNALKRTGIEHLKDKPTHCL----- 144
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTV-DTGRTVVCT 857
SFG Q+KR+ IA LV P ++ +DEPT+GLD + G T++
Sbjct: 145 SFG----QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200
Query: 858 IHQPSIEIFEAF-DELLLMKRGGRVIYGG 885
H I+I + D + +MK GRVI G
Sbjct: 201 TH--DIDIVPLYCDNVFVMKE-GRVILQG 226
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+S GQKKRV ++V K L +DE + GLD +I+K + ++ T ++A
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 206 PPPETFELF-DDLVLLSDGYLVYQGPRAEVL---EFFESLGFRLPPRKGVADFLQEVTSK 261
+ L+ D++ ++ +G ++ QG EV E + RL PR G L E+ +
Sbjct: 204 --IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL-PRIG---HLMEILKE 257
Query: 262 KD 263
KD
Sbjct: 258 KD 259
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKI 723
SK + K+ L NV+ G ++G SGAGKTT M ++AG TG D +
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
Query: 724 SG-----YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFV 777
+ P E R G V Q P +T E++ F N+++ SK++ + V
Sbjct: 70 ASNGKLIVPPED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKM----SKEEIRKRV 121
Query: 778 EEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXX 837
EEV +++ + H L P LS Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 122 EEVAKILD---IHHVLNHFPRE--LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 838 XXXXXXXXNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
G T++ H P+ +IF D + ++ +G V G
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
R +SGGQ++RV +V L +DE + LD+ V+ ++ T L+ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVV 197
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQG 229
P + F + D + +L G LV G
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 730
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEIS---KDQRHEFVEEVMSLVELD 787
+ + ++ Q + S N+ LP E+ KD+ V E++SLV L
Sbjct: 95 LSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+H S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 155 D-KHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK---SGSITYNGWEL---DEFQVQRASAYIGQTDN 57
++G G+GKSTL+ + NL + GS+ +G EL E ++ +A IG
Sbjct: 59 VIGASGAGKSTLIRCV------NLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
H L+ R A L E P E+ K
Sbjct: 113 HFNLLSSRTVFGNVA------------------LPLELDNTPKDEV------------KR 142
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
V+ +L+++GL D+ + +SGGQK+RV + K L D+ ++ LD
Sbjct: 143 RVTE--LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+TT I++ +++ ++ T L+ + + D + ++S+G L+ Q +EV
Sbjct: 196 PATTRSILELLKDINRRLGLTILL-ITHEXDVVKRICDCVAVISNGELIEQDTVSEVF 252
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 28/224 (12%)
Query: 686 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST--FARISGYVEQE 743
+ G ALVGSSG GK+T++ +L + ++G I I G F R + V +
Sbjct: 442 NAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQ 499
Query: 744 DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV-MSLVE-----LDSLRHALVGSP 797
+ TIEE N+ L KE R E V M+ E L + + LVG
Sbjct: 500 EPALFNCTIEE------NISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCT 857
G+ LS Q++R+ IA LV NP I+ +DE TS LD + GRT +
Sbjct: 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALD-AESEGIVQQALDKAAKGRTTIII 609
Query: 858 IHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGL 901
H+ S I A +L++ + G+V+ ++G H +M QGL
Sbjct: 610 AHRLST-IRNA--DLIISCKNGQVV---EVGDHRALMAQ--QGL 645
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 38/236 (16%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISG 725
++++L +S PG ALVG SG GK+T++ D L G +I+G +IK
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI---FIDGSEIKTLN 1147
Query: 726 YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
+S A +S ++ +I E++ + + P ++ Q VEE L
Sbjct: 1148 PEHTRSQIAIVS-----QEPTLFDCSIAENIIYGLD---PSSVTMAQ----VEEAARLAN 1195
Query: 786 LDSLRHAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXX 838
+ + L VG G+ LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 1196 IHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESE 1253
Query: 839 XXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ GRT + H+ + + A + + + G +I + G H+Q+M
Sbjct: 1254 KVVQEALDRAREGRTCIVIAHRLNT-VMNA--DCIAVVSNGTII---EKGTHTQLM 1303
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQK+R+ +V K L +DE ++ LD+ + K V+ + + ++
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE----KVVQEALDRAREGRTCIVIA 1273
Query: 206 PPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
T D + ++S+G ++ +G +++
Sbjct: 1274 HRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 135 DTVVGSEMLRG--VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+T+VG RG +SGGQK+R+ +V K L +DE ++ LD+ +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 17/225 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA----RISGYVE 741
G L+G SG GKTT + ++AG + G I K+ P E+ F R V
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP-EKGIFVPPKDRDIAMVF 87
Query: 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801
Q P +T+ +++ F LR DQR V E++ L EL L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL------LNRKPRE-- 139
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXN-TVDTGRTVVCTIHQ 860
LS QR+R+ + +V P + MDEP S LD G T + H
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 861 PSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIP 905
+E D + +M RG G V+ + + G G P
Sbjct: 200 -QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSP 243
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 51/241 (21%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQ---TDNHI 59
+LLGP G GK+T L +AG L+E R YIG D
Sbjct: 33 ILLGPSGCGKTTTLRMIAG------------------LEE--PSRGQIYIGDKLVADPEK 72
Query: 60 AELTVRETLDFAARCQGANDSFAAY----IKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
+ D A Q S+A Y + D + P EID ++
Sbjct: 73 GIFVPPKDRDIAMVFQ----SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE------ 122
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
V +LGL T + + R +SGGQ++RV G IV + MDE +
Sbjct: 123 --------VAELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
LD+ ++ ++ Q+ T + + E + D + +++ G L G EV
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Query: 236 E 236
+
Sbjct: 229 D 229
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 23/219 (10%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG--YIEGDIKISGYP 727
E+ + L NV+ G +++G SG+GK+T+++++ + T G YI+ +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLD 73
Query: 728 KEQSTFARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
++ T R G+V Q+ P +T E++ + +S ++R + E + + E
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
L+ R A P LS Q++R+ IA L NP II D+PT LD
Sbjct: 134 LEE-RFA-NHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 846 N-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883
+ G+TVV H ++ F G R+IY
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQED 744
G +TALVG SG+GK+T++ +L + G I + G+ Q G V QE
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA---LVGSPGSFG 801
+ +I E++ + A+ P ++ ++ E ++ + + +VG G
Sbjct: 428 ILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL- 483
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQP 861
LS Q++R+ IA L+ NP I+ +DE TS LD +D GRTV+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 862 S 862
S
Sbjct: 543 S 543
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 45/239 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNH-- 58
+T L+GP GSGKST+L L D SG+I+ +G ++ + + IG
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ ++ E + + GA+D + +++ R+ + + AF++ G
Sbjct: 429 LFSCSIAENIAY-----GADDPSSVTAEEIQRVAEVANAV------AFIRNFPQG----- 472
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+TVVG +GV SGGQK+R+ ++ K L +DE ++ L
Sbjct: 473 ---------------FNTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
D+ + + + + MD ++ + T + + + +L G + G E+L
Sbjct: 515 DAENEYLVQEALDRL---MDGRTVLVIAH-RLSTIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 20/233 (8%)
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
+D Q +S G L++L ++ G + ++G SG+GK+T + L + + E
Sbjct: 4 IDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDE 57
Query: 719 GDIKISG--YPKEQSTFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR 773
G+I I G + + ++ G V Q P +T+ ++ + P ++ K R
Sbjct: 58 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPR 112
Query: 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ + M L++ L+ P S LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 113 EKAEAKAMELLDKVGLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
Query: 834 XXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ G T+V H+ E D +L M GG +I GK
Sbjct: 171 PEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEGK 221
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQ +RV + K + DE ++ LD +++ ++ ++ ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTH 196
Query: 206 PPPETFELFDDLVLLSDGYLVYQG 229
E+ D ++ + GY++ +G
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEG 220
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQED 744
G +TALVG SG+GK+T++ +L + G I + G+ Q G V QE
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA---LVGSPGSFG 801
+ +I E++ + A+ P ++ ++ E ++ + + +VG G
Sbjct: 459 ILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL- 514
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQP 861
LS Q++R+ IA L+ NP I+ +DE TS LD +D GRTV+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 862 S 862
S
Sbjct: 574 S 574
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 45/239 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNH-- 58
+T L+GP GSGKST+L L D SG+I+ +G ++ + + IG
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ ++ E + + GA+D + +++ R+ + + AF++ G
Sbjct: 460 LFSCSIAENIAY-----GADDPSSVTAEEIQRVAEVANAV------AFIRNFPQG----- 503
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+TVVG +GV SGGQK+R+ ++ K L +DE ++ L
Sbjct: 504 ---------------FNTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 545
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
D+ + + + + MD ++ + T + + + +L G + G E+L
Sbjct: 546 DAENEYLVQEALDRL---MDGRTVLVIAH-HLSTIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 730
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 71
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEIS---KDQRHEFVEEVMSLVELD 787
+ + ++ Q + + S N+ LP E+ KD+ V E++SLV L
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+H S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 132 D-KHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 145 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALL 204
+SGGQK+RV + K L DE ++ LD +TT I++ +++ ++ T L+ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-IT 198
Query: 205 QPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
+ D + ++S+G L+ Q +EV
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEV 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 20/233 (8%)
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
+D Q +S G L++L ++ G + ++G SG+GK+T + L + + E
Sbjct: 25 IDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDE 78
Query: 719 GDIKISG--YPKEQSTFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR 773
G+I I G + + ++ G V Q P +T+ ++ + P ++ K R
Sbjct: 79 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPR 133
Query: 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ + M L++ L+ P S LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 134 EKAEAKAMELLDKVGLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
Query: 834 XXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ G T+V H+ E D +L M GG +I GK
Sbjct: 192 PEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEGK 242
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQ +RV + K + DE ++ LD +++ ++ ++ ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTH 217
Query: 206 PPPETFELFDDLVLLSDGYLVYQG 229
E+ D ++ + GY++ +G
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEG 241
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQED 744
G L+G SG GKTT + ++AG T G I GD ++ P + + V Q
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS----MVFQSY 92
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P +T+ E++ F P +I K + E + V EL + L P LS
Sbjct: 93 AVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--LSG 144
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIE 864
QR+R+ +A +V P ++ MDEP S LD + + +E
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 865 IFEAFDELLLMKRG 878
D + +M RG
Sbjct: 205 AMTMGDRIAVMNRG 218
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQ++RV IV L MDE + LD+ + ++ ++ T + +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTH 200
Query: 206 PPPETFELFDDLVLLSDGYLVYQG--------------------PRAEVLE------FFE 239
E + D + +++ G L+ G P +LE + E
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLE 260
Query: 240 SLGFRLPPRKGVADFLQEVTSK 261
GFR+ + + D L++ K
Sbjct: 261 GRGFRIELPQDLMDLLKDYVGK 282
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQED 744
G L+G SG GKTT + ++AG T G I GD ++ P + + V Q
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS----MVFQSY 93
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P +T+ E++ F P +I K + E + V EL + L P LS
Sbjct: 94 AVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--LSG 145
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIE 864
QR+R+ +A +V P ++ MDEP S LD + + +E
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 865 IFEAFDELLLMKRG 878
D + +M RG
Sbjct: 206 AMTMGDRIAVMNRG 219
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQ++RV IV L MDE + LD+ + ++ ++ T + +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTH 201
Query: 206 PPPETFELFDDLVLLSDGYLVYQG--------------------PRAEVLE------FFE 239
E + D + +++ G L+ G P +LE + E
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLE 261
Query: 240 SLGFRLPPRKGVADFLQEVTSK 261
GFR+ + + D L++ K
Sbjct: 262 GRGFRIELPQDLMDLLKDYVGK 283
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 730
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEIS---KDQRHEFVEEVMSLVELD 787
+ + ++ Q + + S N+ LP E+ KD+ V E++SLV L
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+H S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 155 D-KHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 145 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALL 204
+SGGQK+RV + K L D+ ++ LD +TT I++ +++ ++ T L+ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-IT 221
Query: 205 QPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
+ D + ++S+G L+ Q +EV
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 23/219 (10%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG--YIEGDIKISGYP 727
E+ + L NV+ G ++ G SG+GK+T ++++ + T G YI+ +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NIKTNDLD 73
Query: 728 KEQSTFARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
++ T R G+V Q+ P +T E++ + S ++R + E + E
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE 133
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
L+ R A P LS Q++R+ IA L NP II DEPT LD
Sbjct: 134 LEE-RFA-NHKPNQ--LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLK 189
Query: 846 N-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883
+ G+TVV H ++ F G R+IY
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKT-GGYIEGDIKISGYPKE 729
LS+VS G ALVG SG+GK+T+ DV +G G+ D K++ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
FA +S ++VH TI ++ ++A E +++Q + + ++ ++++
Sbjct: 419 ---FALVS-----QNVHLFNDTIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENM 466
Query: 790 RHAL---VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXN 846
L +G G+ LS QR+R+ IA L+ + ++ +DE TS LD +
Sbjct: 467 PQGLDTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALD-TESERAIQAALD 524
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ +TV+ H+ S E DE+L++ G
Sbjct: 525 ELQKNKTVLVIAHRLS--TIEQADEILVVDEG 554
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 110/236 (46%), Gaps = 47/236 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV---QRASAYIGQTDNHIA 60
L+G GSGKST+ D + SGSI +G ++ ++++ +R A + Q + H+
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLF 429
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T+ + +AA + TR + E+ R + H++
Sbjct: 430 NDTIANNIAYAAEGE------------YTREQIEQAAR----------------QAHAM- 460
Query: 121 TDYVLNV-LGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
+++ N+ GLD TV+G E +SGGQ++RV ++ L +DE ++ LD+
Sbjct: 461 -EFIENMPQGLD----TVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ + ++ + ++ + ++ T E D+++++ +G ++ +G A++L
Sbjct: 515 SE----RAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG------YPKEQ 730
+L V+ + G + AL+G +GAGK+TL +LAG G+I + G P E+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ + Q V P VTI L + +L +E+ EF +V +EL
Sbjct: 78 ARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWD 132
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ + + G S ++KR I LV P+ +DE SGLD
Sbjct: 133 ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 17/211 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKEQSTFA 734
+ VS G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R G V Q +T+ +++ F LR K + KD+ V E++ + L+S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSF--GLR-EKRVPKDEMDARVRELLRFMRLESYANRF- 142
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT-GRT 853
LS Q++R+ +A L P ++ DEP + +D D G T
Sbjct: 143 ----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
V H E E D +L++ G +G
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFG 228
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 49/239 (20%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ-RASAYIGQTDNHI 59
M LLGP GSGK+T+L +AG G + G + + Q R + Q
Sbjct: 43 MVGLLGPSGSGKTTILRLIAGL---ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99
Query: 60 AELTVRETLDFAARCQGA-NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK-KH 117
+TV + + F R + D A +++L R FM+ S + H
Sbjct: 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLR---------------FMRLESYANRFPH 144
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+S GGQ++RV + + L DE +D
Sbjct: 145 ELS---------------------------GGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ ++ VR +M T++ + E E+ D +++L +G + G EV E
Sbjct: 178 TQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 660 DTPQAMRSKGI--HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 717
DT + +R++ I + + + L VS + G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 718 EGDIKISGYPKEQSTFARISGYVEQEDVHSPQ----VTIEESLWFSA---------NLRL 764
EG + A + Y +PQ +T+ E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 120
Query: 765 PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
K I K++ E VE+ ++E L H G LS Q K + I L+ NP +I
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIV 176
Query: 825 MDEPTSGL 832
MDEP +G+
Sbjct: 177 MDEPIAGV 184
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 40/235 (17%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAY----IGQTD 56
+TL++GP GSGKSTL+ + G L + G + + ++ + Y QT
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ E+TV E L C G + + + K E+E + +I F+K S + +K
Sbjct: 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-VEKAFKILEFLKLSHLYDRK 150
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+SGGQ K V G ++ K + MDE G+
Sbjct: 151 AG--------------------------ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALL--QPPPETFELFDDLVLLSDGYLVYQG 229
I N V ++ A + L+ D L ++ +G ++ +G
Sbjct: 185 APGLAHDIF----NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
+ L +VS PG ALVG SGAGK+T++ +L + G I+I G Q T A
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQAS 125
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
+ ++ PQ T+ + + N+R + + + +EV + + + A++
Sbjct: 126 LRSHIGV----VPQDTVLFNDTIADNIRYGRVTAGN------DEVEAAAQAAGIHDAIMA 175
Query: 796 SP-------GSFG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXN 846
P G G LS +++R+ IA ++ P II +DE TS LD
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
V RT + H+ S + D++L++K G
Sbjct: 236 -VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 41/232 (17%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
L+GP G+GKST+L L D SG I +G ++ + ++IG +
Sbjct: 85 LVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASLRSHIG--------VV 133
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
++T+ F ND+ A I+ R N E++A +A+ + + Y
Sbjct: 134 PQDTVLF-------NDTIADNIR------YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY 180
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
T VG L+ +SGG+K+RV I+ + +DE ++ LD+S
Sbjct: 181 -----------RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE-- 226
Query: 184 IVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ ++ + ++ A ++ T D ++++ DG +V +G R E L
Sbjct: 227 --RAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERG-RHEAL 275
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 660 DTPQAMRSKGI--HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 717
DT + +R++ I + + + L VS G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 718 EGDIKISGYPKEQSTFARISGYVEQEDVHSPQ----VTIEESLWFSA---------NLRL 764
EG + A + Y +PQ +T+ E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFY 120
Query: 765 PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
K I K++ E VE+ ++E L H G LS Q K + I L+ NP +I
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIV 176
Query: 825 MDEPTSGL 832
MDEP +G+
Sbjct: 177 MDEPIAGV 184
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 40/235 (17%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAY----IGQTD 56
+TL++GP GSGKSTL+ + G L + G + + ++ + Y QT
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ E+TV E L G + + + K E+E + +I F+K S + +K
Sbjct: 92 QPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM-VEKAFKILEFLKLSHLYDRK 150
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+SGGQ K V G ++ K + MDE G+
Sbjct: 151 AG--------------------------ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALL--QPPPETFELFDDLVLLSDGYLVYQG 229
I N V ++ A + L+ D L ++ +G ++ +G
Sbjct: 185 APGLAHDIF----NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 19/224 (8%)
Query: 663 QAMRSKGIHE--KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL----AGRKTGGY 716
+ +R++ I + + ++L +S G +++G+SG+GK+TL+ +L A + +
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 717 IEGDIKISGYPKEQSTFA-RISGYVEQEDVHSPQVTIEESLWFSA-NLRLPKEISKDQRH 774
+EG KE S R G+V Q P++T E++ + PK+ +K++
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 775 EFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDX 834
+ E+ L L P + LS +++R+ IA L P ++F DEPT LD
Sbjct: 123 YLLSEL-------GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 835 XXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ G ++V H+ E+ E L MK G
Sbjct: 174 ANTKRVMDIFLKINEGGTSIVMVTHER--ELAELTHRTLEMKDG 215
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 42/185 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
++G GSGKSTLL L G LD G + G E+D T+ L
Sbjct: 35 IIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVD------------YTNEKELSLL 79
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
L F + F I +LT LE I P ++ K + G +Y
Sbjct: 80 RNRKLGFVFQ-------FHYLIPELTALENV--IVPMLKMGKPKKEAKERG-------EY 123
Query: 124 VLNVLGLDLCSDTVVGSEMLRG---VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+L+ LGL G ++ R +SGG+++RV + LF DE + LDS+
Sbjct: 124 LLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 181 TFQIV 185
T +++
Sbjct: 176 TKRVM 180
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 660 DTPQAMRSKGI--HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 717
DT + +R++ I + + + L VS + G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 718 EGDIKISGYPKEQSTFARISGYVEQEDVHSPQ----VTIEESLWFSA---------NLRL 764
EG + A + Y +PQ +T+ E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFY 120
Query: 765 PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
K I K++ E VE+ ++E L H G LS Q K + I L+ NP +I
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIV 176
Query: 825 MDEPTSGL 832
MD+P +G+
Sbjct: 177 MDQPIAGV 184
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 40/235 (17%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAY----IGQTD 56
+TL++GP GSGKSTL+ + G L + G + + ++ + Y QT
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ E+TV E L G + + + K E+E + +I F+K S + +K
Sbjct: 92 QPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM-VEKAFKILEFLKLSHLYDRK 150
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+SGGQ K V G ++ K + MD+ G+
Sbjct: 151 AG--------------------------ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALL--QPPPETFELFDDLVLLSDGYLVYQG 229
I N V ++ A + L+ D L ++ +G ++ +G
Sbjct: 185 APGLAHDIF----NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKEQSTF 733
+L+++S PG + ++G+SG GKTTL+ LAG + G+I +SG + K +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 734 ARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LR 790
R GY+ QE V P +T+ ++ + + + QR E + E+ + EL
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVD- 849
H L G Q++R +A L +P +I +DEP S LD +
Sbjct: 137 HELSGG---------QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G++ V H E + D + +MK+G
Sbjct: 188 NGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA----RISGYVE 741
G L+G SG GKTT + +AG T G I + + P E+ F R V
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP-EKGVFVPPKERDVAXVF 90
Query: 742 QEDVHSPQVTIEESLWFSANLR-LPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800
Q P T+ +++ F LR +PK+ D+R V E + L EL L P
Sbjct: 91 QSYALYPHXTVYDNIAFPLKLRKVPKQ-EIDKRVREVAEXLGLTEL------LNRKPRE- 142
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS QR+R+ + ++ P + DEP S LD
Sbjct: 143 -LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATAL 200
R +SGGQ++RV G I+ K DE + LD+ + ++ Q+ T +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+LS V+ PG L A++G +G+GK+TLM+++ + G +++ +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDL 415
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G++ PQ T+ S NL+ +E + D +E++ ++ + ++
Sbjct: 416 RGHISA----VPQETVLFSGTIKENLKWGREDATD------DEIVEAAKIAQIHDFIISL 465
Query: 797 P---------GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
P G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL 203
R SGGQK+R++ +V K L +D+ ++ +D T +I+ ++ + +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFII 534
Query: 204 LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
Q P L D +++L +G + G E+LE
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHKELLE 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKEQST 732
+ L +++ G ALVG +G+GK+T+ +L EGDIKI G +++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNS 90
Query: 733 FARISGYVEQEDVHSPQVTIEESLWF----SANLRLPKEISKDQRHEFVEEVMSLVELDS 788
I G V Q+ + + TI+ ++ + + + + K Q ++F+E L
Sbjct: 91 IRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEA------LPK 143
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTV 848
+VG+ G LS +R+R+ IA L+ +P I+ DE TS LD + +
Sbjct: 144 KWDTIVGNKG-MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-L 201
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
RT++ H+ S + + ++L+ +G V + G H ++
Sbjct: 202 RKNRTLIIIAHRLS--TISSAESIILLNKGKIV----EKGTHKDLL 241
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
DT+VG++ ++ +SGG+++R+ ++ K + DE ++ LDS T + K V +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED---- 200
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237
+ + ++ T + ++LL+ G +V +G ++L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 42/268 (15%)
Query: 640 GMIMPFHPLTMT-FHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSS 697
G++ P H + F ++S+ Y + P + +L ++ PG +TALVG +
Sbjct: 4 GLLTPLHLEGLVQFQDVSFAYPNRPDVL-----------VLQGLTFTLRPGEVTALVGPN 52
Query: 698 GAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFARISGYVEQEDVHSPQV---T 751
G+GK+T+ +L + TGG + D K + Y E R V QE PQV +
Sbjct: 53 GSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY--EHRYLHRQVAAVGQE----PQVFGRS 106
Query: 752 IEESLWFSANLR-LPKEIS----KDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806
++E++ + + +EI+ K H F+ + + + V GS LS Q
Sbjct: 107 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE------VDEAGS-QLSGGQ 159
Query: 807 RKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIF 866
R+ + +A L+ P ++ +D+ TS LD + + V I Q + +
Sbjct: 160 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLV 218
Query: 867 EAFDELLLMKRGGRVIYGGKLGVHSQIM 894
E D +L ++ GG + G G H Q+M
Sbjct: 219 EQADHILFLE-GGAIREG---GTHQQLM 242
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 732 TFARISGYVEQEDVHSPQVTI-EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ +H+ + +E L F + R + I+ E ++ V ++S
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGA 135
Query: 791 HALV-GSPGSFG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXX 840
H + G P + LS QR+ + +A L+ P ++ +D+ TS LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV 195
Query: 841 XXXXXNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ + RTV+ HQ + + E +L +K G + G H Q+M
Sbjct: 196 QRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEGSVC----EQGTHLQLM 244
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQ 194
DT VG E +SGGQ++ V ++ + L +D+ ++ LD+ ++ + +
Sbjct: 147 DTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 195 MDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
T L+ Q E ++ L +G + QG +++E
Sbjct: 206 ASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 23/224 (10%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--K 728
++KK +L +++ PG ALVG +G+GKTT++++L + G I + G K
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRK 421
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ + R S + +D T++E+L + + E ++E L D
Sbjct: 422 IKRSSLRSSIGIVLQDTILFSTTVKENLKYG---------NPGATDEEIKEAAKLTHSDH 472
Query: 789 -LRHALVG-----SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXX 842
++H G + LS QR+ L I +ANP I+ +DE TS +D
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 843 XXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
++ G+T + H+ + I A +L+++ R G ++ GK
Sbjct: 533 AMWKLME-GKTSIIIAHRLN-TIKNA--DLIIVLRDGEIVEMGK 572
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 44/235 (18%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAE 61
L+GP GSGK+T++ L D + G I +G ++ + + R+S I D +
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS 442
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
TV+E L + GA D IK+ +L H F+K G +V T
Sbjct: 443 TTVKENLKYG--NPGATDE---EIKEAAKLTHSDH---------FIKHLPEG--YETVLT 486
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
D G DL S GQ++ + + K L +DE ++ +D+ T
Sbjct: 487 DN-----GEDL--------------SQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
I + + + + L T + D +++L DG +V G E+++
Sbjct: 528 KSIQAAMWKLMEGKTSIIIAHRLN----TIKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +SG G + LVG +GAGK+TL+ AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 738 ---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ Q+ P T +W L + R E + +V + LD L
Sbjct: 73 LHRAYLSQQQT-PPFAT---PVWHYLTLHQHDK----TRTELLNDVAGALALDD---KLG 121
Query: 795 GSPGSFGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXXXXNTVD 849
S QR RL V + ANP+ ++ +DEP + LD
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G +V + H + + A LL +GG+ + G+
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGR 216
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
L+GP G+GKSTLL AG G GSI + G L+ + + + H A L+
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGK----GSIQFAGQPLEAWSATKLAL-------HRAYLS 79
Query: 64 VRETLDFA 71
++T FA
Sbjct: 80 QQQTPPFA 87
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 24/217 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +SG G + LVG +GAGK+TL+ +AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 738 ---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ Q+ P T +W L + R E + +V + LD L
Sbjct: 73 LHRAYLSQQQT-PPFAT---PVWHYLTLHQHDK----TRTELLNDVAGALALDD---KLG 121
Query: 795 GSPGSFGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXXXXNTVD 849
S QR RL V + ANP+ ++ +D+P + LD
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G +V + H + + A LL +GG+++ G+
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGR 216
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
L+GP G+GKSTLL +AG G GSI + G L+ + + + H A L+
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLAL-------HRAYLS 79
Query: 64 VRETLDFA 71
++T FA
Sbjct: 80 QQQTPPFA 87
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +SG G + LVG +GAGK+TL+ AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 738 ---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ Q+ P T +W L + R E + +V + LD L
Sbjct: 73 LHRAYLSQQQT-PPFAT---PVWHYLTLHQHDK----TRTELLNDVAGALALDD---KLG 121
Query: 795 GSPGSFGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXXXXNTVD 849
S QR RL V + ANP+ ++ +DEP + LD
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G +V + H + + A LL +GG+ + G+
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGR 216
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
L+GP G+GKSTLL AG G GSI + G L+ + + + H A L+
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGK----GSIQFAGQPLEAWSATKLAL-------HRAYLS 79
Query: 64 VRETLDFA 71
++T FA
Sbjct: 80 QQQTPPFA 87
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730
++ Q+L ++S P + A G SG GK+T+ +L + G+I I G P +
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDN 68
Query: 731 STFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ G+V Q D TI E+L + L + + + + ++ + ++
Sbjct: 69 ISLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVE 123
Query: 788 SLRHALVGSPGSFG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
++ L G G +S QR+RL IA + NP I+ +DE T+ LD
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD-SESESMVQKAL 182
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+++ GRT + H+ S I +A D++ +++G
Sbjct: 183 DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 39/189 (20%)
Query: 6 GPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG--QTDNHIAELT 63
GP G GKST+ L +G IT +G +D ++ + IG D+ I T
Sbjct: 35 GPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGT 91
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
+RE L + ++ + DL AF ++ +
Sbjct: 92 IRENLTYGLEGDYTDEDLWQVL-DL----------------AFARS-------------F 121
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
V N+ +T VG ++ +SGGQ++R+ + K L +DE + LDS +
Sbjct: 122 VENMPD---QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 184 IVKCVRNFV 192
+ K + + +
Sbjct: 178 VQKALDSLM 186
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +SG G + LVG +GAGK+TL+ +AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 738 ---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ Q+ P T +W L + R E + +V + LD L
Sbjct: 73 LHRAYLSQQQT-PPFAT---PVWHYLTLHQHDK----TRTELLNDVAGALALDD---KLG 121
Query: 795 GSPGSFGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXXXXNTVD 849
S QR RL V + ANP+ ++ +D+P LD
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G +V + H + + A LL +GG+++ G+
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGR 216
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
L+GP G+GKSTLL +AG G GSI + G L+ + + + H A L+
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLAL-------HRAYLS 79
Query: 64 VRETLDFA 71
++T FA
Sbjct: 80 QQQTPPFA 87
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQSTFA 734
L N+S G ++G +GAGKT ++++AG +G + ++ E+ A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+V Q P + ++++L F + K+I +R V+ + H L
Sbjct: 76 ----FVYQNYSLFPHMNVKKNLEFGMRM---KKIKDPKR------VLDTARDLKIEHLLD 122
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+P LS +++R+ +A LV NP I+ +DEP S LD
Sbjct: 123 RNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 54/238 (22%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS-AYIGQTDNHIAE 61
++LGP G+GK+ L +AG ++ SG I +G ++ + ++ A++ Q +
Sbjct: 30 VILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
+ V++ L+F R + IKD R+
Sbjct: 87 MNVKKNLEFGMRMK--------KIKDPKRV------------------------------ 108
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRG---VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
LD D + + R +SGG+++RV +V K L +DE + LD
Sbjct: 109 --------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
T + + + + +H+ + ++ + E + D + ++ DG L+ G E+ E
Sbjct: 161 RTQ-ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 17/195 (8%)
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQED 744
+ G + A++G +G GK+TL+D+L G I+G I++ QS G+V Q
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEVY-----QSI-----GFVPQFF 75
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
++ + + + + +K + H++ +++ LD L + LS
Sbjct: 76 SSPFAYSVLDIVLMGRSTHI-NTFAKPKSHDYQ---VAMQALDYLNLTHLAKREFTSLSG 131
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT-GRTVVCTIHQPSI 863
QR+ + IA + + +I +DEPTS LD + + TVV T HQP+
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191
Query: 864 EIFEAFDELLLMKRG 878
+ A LLL K+
Sbjct: 192 VVAIANKTLLLNKQN 206
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%)
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
S DY + + LD + T + +SGGQ++ + I K + +DE ++ LD +
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQP 206
++ + + + T + QP
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 14/226 (6%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK----TGGYIE--GDIKISGYPKEQ 730
+L +S PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+++
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 731 S---TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ F VE V S Q ++ +L + R + + + + +EE ++L++
Sbjct: 76 AGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK-- 132
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNT 847
+ L+ + G S ++KR I V P + +DE SGLD +
Sbjct: 133 -MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 191
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
D R+ + H I + D + ++ + GR++ G + Q+
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSGDFTLVKQL 236
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL 40
++GP GSGKSTL LAG+ D + G++ + G +L
Sbjct: 32 IMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDL 67
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 14/226 (6%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK----TGGYIE--GDIKISGYPKEQ 730
+L +S PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+++
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 731 S---TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ F VE V S Q ++ +L + R + + + + +EE ++L++
Sbjct: 95 AGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK-- 151
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNT 847
+ L+ + G S ++KR I V P + +DE SGLD +
Sbjct: 152 -MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
D R+ + H I + D + ++ + GR++ G + Q+
Sbjct: 211 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSGDFTLVKQL 255
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL 40
++GP GSGKSTL LAG+ D + G++ + G +L
Sbjct: 51 IMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDL 86
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 30/261 (11%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY 726
H ++ L+++VS + G + A++G +GAGK+TL+ +L G + + E G S
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79
Query: 727 PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL 786
PK AR + Q + ++ E + R P S+D+ + +++VM+ +
Sbjct: 80 PK---ALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDR--QALQQVMAQTDC 131
Query: 787 DSL--RHALVGSPGSFGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDXXXXX 838
+L R V LS +++R+ +A L P +F+DEPTS LD
Sbjct: 132 LALAQRDYRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184
Query: 839 XXXXXXXN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGV-HSQIMID 896
T V C +H ++ A D ++L+ +G V G V +++ +
Sbjct: 185 HTLRLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQ 243
Query: 897 YFQGLDGIPLIPSGYNPATWV 917
++Q G+ P P ++
Sbjct: 244 WYQADLGVSRHPESALPQIYL 264
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 732 TFARISGYVEQEDVHSPQVTI-EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ +H+ + +E L F + R + I+ E ++ V ++S
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGA 135
Query: 791 HALV-GSPGSFG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXX 840
H + G P + LS QR+ + +A L+ P ++ +D TS LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 841 XXXXXNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ + RTV+ Q + + E +L +K G + G H Q+M
Sbjct: 196 QRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEGSVC----EQGTHLQLM 244
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 733
+L +++ G A VG SG GK+TL++++ + G I I G+ + +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR----HEFVEEVMSLVELDSL 789
G V+Q+++ T++E++ +E+ + + H+F+ + L
Sbjct: 414 RNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI------MNLPQG 466
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
VG G LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 467 YDTEVGERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 48/235 (20%)
Query: 5 LGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG--QTDNHIAEL 62
+G G GKSTL+ + D SG I +G + +F IG Q DN +
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV+E + RP + ++A+ K + + D
Sbjct: 430 TVKENILLG--------------------------RPTATDEEVVEAA-----KMANAHD 458
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+++N L DT VG RGV SGGQK+R++ + + L +DE ++ LD +
Sbjct: 459 FIMN---LPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
I + + V D T L ++ T D +V++ +G++V G E++
Sbjct: 513 ESIIQEALD--VLSKDRTTL--IVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 732 TFARISGYVEQEDVHSPQVTI-EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ +H+ + +E L F + R + I+ E ++ V ++S
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGA 135
Query: 791 HALV-GSPGSFG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXX 840
H + G P + L+ QR+ + +A L+ P ++ +D TS LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 841 XXXXXNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ + RTV+ Q + + E +L +K G + G H Q+M
Sbjct: 196 QRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEGSVC----EQGTHLQLM 244
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 92
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P TI+E++ F + + S + + E++ E D+ +V
Sbjct: 93 ----------MPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN----IVLG 137
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E + D++L++ G YG
Sbjct: 198 VTSK--MEHLKKADKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 80
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P TI+E++ F + + S + + E++ E D+ +V
Sbjct: 81 ----------MPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN----IVLG 125
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E + D++L++ G YG
Sbjct: 186 VTSK--MEHLKKADKILILHEGSSYFYG 211
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQSTFARISGYVEQED 744
G + L+G++GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 745 VHSPQVTIEESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803
+ P++T+ E+L A R KE I +D +E + SL L+ L G+ LS
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRD-----LEWIFSL--FPRLKERLKQLGGT--LS 141
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGL 832
+++ L I L + P ++ DEP+ GL
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
K ++L +S G + L+G +GAGKTT + +++ + + G + + +E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 84
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
++ Y+ +E + E L F A S + E VE + L
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIK 141
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTG 851
V + S ++L IA L+ NP + +DEPTSGLD G
Sbjct: 142 DRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRG 878
T++ + H +E+ D + L+ G
Sbjct: 197 LTILVSSHN-MLEVEFLCDRIALIHNG 222
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--------GYIEGDIKISGYPK 728
+L +S + G L G +GAGKTTL+++L + G G + GY
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKV---GYSA 92
Query: 729 EQSTFARISGYVE-------QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
E T + G+V QE V I + ++ + ++I + R+E +++
Sbjct: 93 E--TVRQHIGFVSHSLLEKFQEGERVIDVVISGAF---KSIGVYQDIDDEIRNE-AHQLL 146
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LV + +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 147 KLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 45/106 (42%)
Query: 130 LDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVR 189
L L + + + +S G+K+RV + G + L +DE + GLD ++ +
Sbjct: 146 LKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILD 205
Query: 190 NFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ A + + E F ++LL DG + QG ++L
Sbjct: 206 SLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKEQSTFARISGYVEQEDVHS 747
L+G +GAGK+ ++++AG G+++++G P E+ R G+V Q+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER----RGIGFVPQDYALF 82
Query: 748 PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807
P +++ ++ + + +R E V + E + H L P LS +R
Sbjct: 83 PHLSVYRNIAYG--------LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--LSGGER 132
Query: 808 KRLTIAVELVANPSIIFMDEPTSGLD 833
+R+ +A LV P ++ +DEP S +D
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVD 158
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGG+++RV +V + L +DE + +D T +++ +R FV + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 206 PPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
E L D++ ++ +G +V +G E+
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELF 215
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P TI+E++ F + + S + + +++ E D+ V
Sbjct: 111 ----------MPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN----TVLG 155
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E D++L++ +G YG
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P TI+E++ F + + S + + +++ E D+ V
Sbjct: 111 ----------MPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN----TVLG 155
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E D++L++ +G YG
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 80
Query: 737 SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+E++ V+ +E + S +L ++ISK F E + +V
Sbjct: 81 MPGTIKENIIG--VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNIV 122
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G LS QR R+++A + + + +D P LD + +T
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E + D++L++ G YG
Sbjct: 183 ILVTSK--MEHLKKADKILILHEGSSYFYG 210
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 23/210 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+E++ + V+ +E + S +L ++ISK F E + +V
Sbjct: 111 MPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNIV 153
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G LS QR R+++A + + + +D P LD + +T
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E + D++L++ G YG
Sbjct: 214 ILVTSK--MEHLKKADKILILHEGSSYFYG 241
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
S + Q P E + S + + + K + E E++ E D+ +V
Sbjct: 102 S-FCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE--EDISKFAEKDN----IVLG 154
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E + D++L++ G YG
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQ 860
LS Q++R++IA L P ++ DEPTS LD + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
S + Q P E + S + + + K + E E++ E D+ +V
Sbjct: 102 S-FCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE--EDISKFAEKDN----IVLG 154
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS QR R+++A + + + +D P LD + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E + D++L++ G YG
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 38/263 (14%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA-- 734
+L N+S SPG L+G +G+GK+TL+ EG+I+I G + T
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 735 -RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
+ G + PQ S F NL P DQ E+ + + LR +
Sbjct: 93 RKAFGVI-------PQKVFIFSGTFRKNLD-PNAAHSDQ------EIWKVADEVGLRSVI 138
Query: 794 VGSPGSFG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXX 844
PG LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 139 EQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
Query: 845 XNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGI 904
++C + IE D+ L+++ Y L ++ + G G
Sbjct: 199 KQAFADCTVILC---EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGS 255
Query: 905 PLIPSGYNPATWVLEVTTTAVEE 927
P + + P ++VT TA+++
Sbjct: 256 PKM--NFLP----VKVTATAIDQ 272
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 23/210 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+E++ S V+ +E + S +L ++I+K F E+ +++
Sbjct: 111 MPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITK-----FAEQDNTVL---------- 154
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G LS QR R+++A + + + +D P LD + +T
Sbjct: 155 -GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 213
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E D++L++ +G YG
Sbjct: 214 ILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P TI+E++ F + + S + + E++ E D+ +V
Sbjct: 111 ----------MPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN----IVLG 155
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVC 856
G LS Q+ ++++A + + + +D P LD + +T +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 857 TIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ +E + D++L++ G YG
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFYG 241
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKEQSTFARISGYVEQED 744
G L A+VG G GK++L+ L +EG + I G Y +Q+ Q D
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI--------QND 80
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
++ E++ F L P S Q + ++ L D +G G LS
Sbjct: 81 ------SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE---IGEKG-VNLSG 130
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLD 833
Q++R+++A + +N I D+P S +D
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 768 ISKDQRHEF-VEEVMSLVELDSLRHA-----LVGSPGSFGLSTEQRKRLTIAVELVANP- 820
++ D+ H+F +E LD+LR +G P + LS + +R+ +A EL +
Sbjct: 692 LTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGR 750
Query: 821 --SIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLM--- 875
++ +DEPT+GL VD G TV+ H+ +++ A D +L +
Sbjct: 751 GGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPG 808
Query: 876 --KRGGRVIYGG 885
+ GGR++ G
Sbjct: 809 AGEDGGRLVAQG 820
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 737 -SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
G +++ + V+ +E + S +L ++I+K F E+ +++
Sbjct: 111 MPGTIKENIIRG--VSYDEYRYKSVVKACQLQQDITK-----FAEQDNTVL--------- 154
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRT 853
G LS QR R+++A + + + +D P LD + +T
Sbjct: 155 --GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E D++L++ +G YG
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+E++ V+ +E + S +L ++I+K F E+ +++
Sbjct: 111 MPGTIKENIIG--VSYDEYRYKSVVKACQLQQDITK-----FAEQDNTVL---------- 153
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G LS QR R+++A + + + +D P LD + +T
Sbjct: 154 -GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 212
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E D++L++ +G YG
Sbjct: 213 ILVTSK--MEHLRKADKILILHQGSSYFYG 240
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 26/154 (16%)
Query: 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKEQSTFARISGY 739
+G G + ++G +G GKTT +L G T G + + +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 740 VEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
V+Q ++ + + S W F EEV + L L + V
Sbjct: 347 VQQYLENASKDALSTSSW------------------FFEEVTKRLNLHRLLESNVND--- 385
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS + ++L IA L + +D+P+S LD
Sbjct: 386 --LSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 24/217 (11%)
Query: 684 IFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI------EGDIKISGYPKEQSTFARIS 737
+ G + +VG +G GK+T + +LAG+ +G I+ + Q+ F ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797
E V PQ + + + ++ + + K +EEV+ +EL+++ +
Sbjct: 103 NG-EIRPVVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH- 158
Query: 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCT 857
LS + +R+ IA L+ N + F DEP+S LD + G++V+
Sbjct: 159 ----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 858 IHQPSIEIFEAFDELLLMKRGGRVIYG--GKLGVHSQ 892
H + + + +++ V+YG G G+ SQ
Sbjct: 215 EH--DLAVLDYLSDII------HVVYGEPGVYGIFSQ 243
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGG+ +RV ++ +DE S LD + + +R+ + + TAL+
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV--- 458
Query: 206 PPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLGFRLPP---RKGVADFLQE--VTS 260
E L D V SD V++G + G LPP R+G FL +T
Sbjct: 459 ---EHDVLXIDYV--SDRLXVFEGEPGK-------YGRALPPXGXREGXNRFLASIGITF 506
Query: 261 KKDQAKYWADTSKP 274
++D DT +P
Sbjct: 507 RRD-----PDTGRP 515
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 728
G G + +VG +G GKTT + LAG T G IE D+ ++ P+
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ 354
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 737 SGYVEQEDVHSPQVTIEESLWFSA--NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+E++ V+ +E + S +L ++ISK F E + +V
Sbjct: 111 MPGTIKENIIG--VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNIV 152
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTV 854
G LS Q+ ++++A + + + +D P LD + +T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + +E + D++L++ G YG
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYG 240
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD--------IKISGYPKEQSTFARISG 738
PG + LVG++G GK+T + +LAG++ D IK + Q+ F ++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML- 160
Query: 739 YVEQEDVHS---PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
++D+ + PQ ++ E+ K + + E+V +++ L + L
Sbjct: 161 ---EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVV 855
LS + +R I + V + DEP+S LD + + + V+
Sbjct: 218 DIEK--LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 856 CTIHQPSI 863
C H S+
Sbjct: 276 CVEHDLSV 283
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 24/157 (15%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L+ G FS + ++G +G GKTTL+ +LAG + K++ K Q +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G V Q L+F K R +F+ + LR +
Sbjct: 427 PGTVRQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS + +R+ I + L I +DEP++ LD
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE------FQVQRASAY-IGQT 55
++LGP GSGK+TLL A++G L SG+I NG E+ + + AY IG T
Sbjct: 34 IILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVT 89
Query: 56 DNHIAEL 62
N I L
Sbjct: 90 VNDIVYL 96
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQSTFARISGYVEQEDVHSPQVT 751
++G +G+GKTTL+ ++G G+I I+G ++ + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSL-VELDSLRHALVGSPGSFGLSTEQRKRL 810
+ + ++ L +E+ R F+E + +L + + LR L + LS Q +
Sbjct: 90 VNDIVY------LYEELKGLDRDLFLEMLKALKLGEEILRRKL------YKLSAGQSVLV 137
Query: 811 TIAVELVANPSIIFMDEPTSGLD 833
++ L + P I+ +DEP +D
Sbjct: 138 RTSLALASQPEIVGLDEPFENVD 160
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 775 EFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
E +E+ + + L V + LS ++R+ IA+ L+ +P ++ +DEPTS LD
Sbjct: 128 ELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 684 IFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKEQSTFARIS 737
I G++ +VG +G GKTT + +LAG+ E + I+ + Q+ F R+
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH--EFVEEVMSLVE---------- 785
E V PQ +L LPK + R + V+EV E
Sbjct: 173 NG-EIRPVVKPQYV---------DL-LPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
LD H L G + +R+ IA L+ F DEP+S LD
Sbjct: 222 LDRELHQLSGG---------ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272
Query: 846 NTVDTGRTVVCTIHQPSI 863
+ G+ V+ H ++
Sbjct: 273 RLANEGKAVLVVEHDLAV 290
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 45/201 (22%)
Query: 645 FHPLTMTFHNISYYVDT--------PQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGS 696
F P + F +S VD P+ ++ G + +++ G G + +VG
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVE-----PGEIRKGEVIGIVGP 390
Query: 697 SGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQ--EDVHSPQVTI 752
+G GKTT + +LAG T G +E D+ ++ P Q A G V + + S ++
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEGTVYELLSKIDSSKLN- 447
Query: 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTI 812
S ++ L P I D VE+ LS + +R+ I
Sbjct: 448 --SNFYKTELLKPLGII-DLYDRNVED----------------------LSGGELQRVAI 482
Query: 813 AVELVANPSIIFMDEPTSGLD 833
A L+ + I +DEP++ LD
Sbjct: 483 AATLLRDADIYLLDEPSAYLD 503
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 25/134 (18%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGG+ +RV ++ +DE S LD + + +R+ + + + TAL+
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV--- 528
Query: 206 PPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLGFRLPP---RKGVADFLQEV--TS 260
E L D V SD +V++G G LPP R+G+ FL V T
Sbjct: 529 ---EHDVLMIDYV--SDRLIVFEGEPG-------RHGRALPPMGMREGMNRFLASVGITF 576
Query: 261 KKDQAKYWADTSKP 274
++D D+ +P
Sbjct: 577 RRD-----PDSGRP 585
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 714
L +S I P V+ A+VG GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 45/201 (22%)
Query: 645 FHPLTMTFHNISYYVDT--------PQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGS 696
F P + F +S VD P+ ++ G + +++ G G + +VG
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVE-----PGEIRKGEVIGIVGP 376
Query: 697 SGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQ--EDVHSPQVTI 752
+G GKTT + +LAG T G +E D+ ++ P Q A G V + + S ++
Sbjct: 377 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEGTVYELLSKIDSSKLN- 433
Query: 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTI 812
S ++ L P I D VE+ LS + +R+ I
Sbjct: 434 --SNFYKTELLKPLGII-DLYDRNVED----------------------LSGGELQRVAI 468
Query: 813 AVELVANPSIIFMDEPTSGLD 833
A L+ + I +DEP++ LD
Sbjct: 469 AATLLRDADIYLLDEPSAYLD 489
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 684 IFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKEQSTFARIS 737
I G++ +VG +G GKTT + +LAG+ E + I+ + Q+ F R+
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 158
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH--EFVEEVMSLVE---------- 785
E V PQ +L LPK + R + V+EV E
Sbjct: 159 NG-EIRPVVKPQYV---------DL-LPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 207
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXX 845
LD H L G + +R+ IA L+ F DEP+S LD
Sbjct: 208 LDRELHQLSGG---------ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 258
Query: 846 NTVDTGRTVVCTIHQPSI 863
+ G+ V+ H ++
Sbjct: 259 RLANEGKAVLVVEHDLAV 276
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 25/134 (18%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGG+ +RV ++ +DE S LD + + +R+ + + + TAL+
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV--- 514
Query: 206 PPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLGFRLPP---RKGVADFLQEV--TS 260
E L D V SD +V++G G LPP R+G+ FL V T
Sbjct: 515 ---EHDVLMIDYV--SDRLIVFEGEPG-------RHGRALPPMGMREGMNRFLASVGITF 562
Query: 261 KKDQAKYWADTSKP 274
++D D+ +P
Sbjct: 563 RRD-----PDSGRP 571
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 714
+ L +S I P V+ A+VG GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L ++ G + G +G GKTTL+ ++ ++G+I +G P ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 737 SG---YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
G ++ +E + ++++E+ L A+L K ++K++ + + + VE+ L+ L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKNE----IMDALESVEVLDLKKKL 131
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
G LS +R+ +A L+ N I +D+P +D
Sbjct: 132 -GE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQE--DVHSPQV 750
+ G +G GK+TLM +A + + G+P ++ + YVE + HS
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 512
Query: 751 TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810
++ F + + KE KD+ EF ++ P S LS + +L
Sbjct: 513 VLD--FVFESGVGT-KEAIKDKLIEF-----------GFTDEMIAMPIS-ALSGGWKMKL 557
Query: 811 TIAVELVANPSIIFMDEPTSGLD 833
+A ++ N I+ +DEPT+ LD
Sbjct: 558 ALARAVLRNADILLLDEPTNHLD 580
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 777 VEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+EE S++ LD +V GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 3 LLLGPPGSGKSTLLLALAGKL 23
LL GPPG+GK+ L LA+A +L
Sbjct: 81 LLAGPPGTGKTALALAIAQEL 101
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 3 LLLGPPGSGKSTLLLALAGKL 23
LLLGPPG+GK T + LA KL
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKL 44
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 3 LLLGPPGSGKSTLLLALAGKL 23
LLLGPPG+GK T + LA KL
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL 24
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 3 LLLGPPGSGKSTLLLALAGKL 23
LL GPPG+GK+ L LA+A +L
Sbjct: 67 LLAGPPGTGKTALALAIAQEL 87
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDG-NLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
L GPPG+GK++ +LAL +L G +L KS + N + +R + + + + A
Sbjct: 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD------ERGISIVREKVKNFAR 115
Query: 62 LTV 64
LTV
Sbjct: 116 LTV 118
>pdb|3B4N|A Chain A, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B4N|B Chain B, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B8Y|A Chain A, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
pdb|3B8Y|B Chain B, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
Length = 344
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDN 57
L P + ++TL+L+ + + Y GW DE +V R Y G T N
Sbjct: 13 LAAPSFAAQTTLMLS----------QKSDVNYLGWSTDESKVARQEVYRGTTSN 56
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 8/43 (18%)
Query: 680 NVSGI---FSPGVLTALVGSSGAGKTTLMD-----VLAGRKTG 714
N+ GI F GVLT++ G SG+GK+TL++ VLA R G
Sbjct: 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNG 699
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 4 LLGPPGSGKSTLLLALAGK--LDGNL------NKSGSITYNGWELDEFQVQRASAYIGQT 55
L+G P GKST+ AL G+ GN K G YNG ++F+V T
Sbjct: 9 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLT 65
Query: 56 DNHIAELTVRE 66
N I E+ R+
Sbjct: 66 ANSIDEIIARD 76
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 4 LLGPPGSGKSTLLLALAGK--LDGNL------NKSGSITYNGWELDEFQVQRASAYIGQT 55
L+G P GKST+ AL G+ GN K G YNG ++F+V T
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLT 64
Query: 56 DNHIAELTVRE 66
N I E+ R+
Sbjct: 65 ANSIDEIIARD 75
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 4 LLGPPGSGKSTLLLALAGK--LDGNL------NKSGSITYNGWELDEFQVQRASAYIGQT 55
L+G P GKST+ AL G+ GN K G YNG ++F+V T
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLT 64
Query: 56 DNHIAELTVRE 66
N I E+ R+
Sbjct: 65 ANSIDEIIARD 75
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 4 LLGPPGSGKSTLLLALAGK--LDGNL------NKSGSITYNGWELDEFQVQRASAYIGQT 55
L+G P GKST+ AL G+ GN K G YNG ++F+V T
Sbjct: 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLT 68
Query: 56 DNHIAELTVRE 66
N I E+ R+
Sbjct: 69 ANSIDEIIARD 79
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDXXXXXXXXXXXXNTVDT 850
+G P + LS + +R+ +A EL ++ +DEPT+GL VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLM-----KRGGRVIYGG 885
G TV+ H ++++ + D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 40/201 (19%)
Query: 722 KISGYPKEQSTF---------ARISGYVEQEDVHSPQVTIE--------------ESLWF 758
K GY K + +F + GYV+ E + P V +E E +
Sbjct: 698 KARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757
Query: 759 SANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL------VGSPGSFGLSTEQRKRLTI 812
N+ +++ D+ EF + + S+ + H + +G P + LS + +R+ +
Sbjct: 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQRIKL 816
Query: 813 AVELVANPS---IIFMDEPTSGLDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAF 869
A EL + + +DEPT GL VD G TV+ H ++++ +
Sbjct: 817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVIKNA 874
Query: 870 DELLLM-----KRGGRVIYGG 885
D ++ + K GG ++ G
Sbjct: 875 DHIIDLGPEGGKEGGYIVATG 895
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTL---MDVLAGRK 712
L S + G F+PGVLT + G +GKTTL +L+G+K
Sbjct: 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 794 VGSPGSFGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDXXXXXXXXXXXXNTVDT 850
+G P + LS + +R+ +A EL ++ +DEPT+GL VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLM-----KRGGRVI 882
G TV+ H ++++ + D ++ + RGG+++
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIV 630
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDXXXXXXXXXXXXNTVDT 850
+G P + LS + +R+ +A EL ++ +DEPT+GL VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLM-----KRGGRVIYGG 885
G TV+ H ++++ + D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,339,492
Number of Sequences: 62578
Number of extensions: 1434563
Number of successful extensions: 3785
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3435
Number of HSP's gapped (non-prelim): 327
length of query: 1250
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1140
effective length of database: 8,089,757
effective search space: 9222322980
effective search space used: 9222322980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)