Query 000860
Match_columns 1250
No_of_seqs 278 out of 4869
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:36:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000860.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_628-632//hhsearch_pdb/000860hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 648.3 46.5 766 1-887 446-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 584.3 55.6 215 648-887 1029-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 449.5 35.7 422 1-888 119-559 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 445.7 32.0 216 649-901 269-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 444.1 30.4 422 1-888 49-489 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 441.7 29.4 411 1-886 463-981 (986)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 431.1 32.7 197 675-887 335-635 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 429.2 26.4 202 676-902 361-569 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 350.7 33.8 196 676-887 598-897 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 344.1 31.0 195 677-887 639-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=648.28 Aligned_cols=766 Identities=19% Similarity=0.212 Sum_probs=367.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
+++|+||||||||||+++|+|+++| .+|+|.+||.|+.+.+ .|+.++||+|+ +|+.+.||||||.|+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~-~~Lf~~TI~eNI~~g~~---- 517 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQE-PALFNCTIEENISLGKE---- 517 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSS-CCCCSEEHHHHHHTTCT----
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCC---CCCCCCCCCCCCHHCCHHHHHHCCCCCCCC-CEEECCCHHHHHHHHCC----
T ss_conf 7899805898577888875456516---448615799650112599985046665875-33207861678864155----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
+.++.+ ..+ +++.. + .++- +..|+++.||.||++|.+ ||||||||++||
T Consensus 518 ~~~~~~-v~~--a~~~a-------------------~------l~~~--i~~lp~G~~T~vGe~G~~-LSGGQkQRiaiA 566 (1321)
T 4f4c_A 518 GITREE-MVA--ACKMA-------------------N------AEKF--IKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIA 566 (1321)
T ss_dssp TCCHHH-HHH--HHHHT-------------------T------CHHH--HHHSTTTTSSEESSSSCC-CCHHHHHHHHHH
T ss_pred CCHHHH-HHH--HHHHC-------------------C------CHHH--HHCCCCCCCCEECCCCCC-CCHHHHHHHHHH
T ss_conf 220999-999--99875-------------------6------5468--870888886075589887-777787999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHH
Q ss_conf 98734980756417985602798999999999987708989999951899347820124688439807855482139999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~~ 237 (1250)
||++++|+|++||||||+||++++..+.++|+++.+ ++|+|++.|+ .+.++.+|+|++|++|++++.|+++++.+.
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHr--ls~i~~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHR--LSTIRNADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSC--TTTTTTCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCC--HHHHHHCCEEEEEECCEEECCCCHHHHHHH
T ss_conf 987259998998455446887899999999999847--9889997363--878986898999639965136899999985
Q ss_pred HHHCCCCCCCCCCCHHHHH--HHCCCHHHHHHH--CCCCC-CC----------CCCCHHHHHHHHHHCHHHHHHHHHCCC
Q ss_conf 8839999999999022787--605912243320--03899-97----------788987999999728222325852059
Q 000860 238 FESLGFRLPPRKGVADFLQ--EVTSKKDQAKYW--ADTSK-PY----------VFLPVSEIANAFKSSRFGKSLESSLAV 302 (1250)
Q Consensus 238 f~~~G~~~p~~~~~~d~~~--~i~~~~~~~~~~--~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1250)
...-++... ......+..... ..... .. .....++.....+.+... ........
T Consensus 643 ----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 711 (1321)
T 4f4c_A 643 ----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIG-SITNGPVI 711 (1321)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCCCCCCH
T ss_conf ----------3279999996221222233233443322321112222234222222211022111013212-45677402
Q ss_pred CCCCCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHCCCC
Q ss_conf 78889899773--------2346765508999999999999999217357999999999999-------99887652457
Q 000860 303 PFDKSKSHPSA--------LATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVG-------FLTCTMFLKTR 367 (1250)
Q Consensus 303 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~-------l~~g~~f~~~~ 367 (1250)
........... ........+.+.. +......+....+..+...+.+ .+.+.......
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 783 (1321)
T 4f4c_A 712 DEKEERIGKDALSRLKQELEENNAQKTNLFEI--------LYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFA 783 (1321)
T ss_dssp ----CCCCCCHHHHHHHTTTTSCCCCCCHHHH--------HHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 57775315403899999999707863109999--------9998778999999999999999999999999999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHH------H--CCHHHHHHH--HCCCCC----HHHHHHHHHHHHH
Q ss_conf 898871110258799999999--99998744187863------0--013689853--089977----0489999999997
Q 000860 368 QHPTDEKKGALYLNCHFFGMV--HMMFNCFSELPILI------S--RLPVFYKQR--DNYFHP----AWAWSIASWILRV 431 (1250)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~--~~~v~~~~~--~~~~~~----~~~~~l~~~l~~l 431 (1250)
..+........+..+.+..+. ...+.......... . +..++.+-. ...++. +..-.+.....++
T Consensus 784 ~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~ 863 (1321)
T 4f4c_A 784 GNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDV 863 (1321)
T ss_dssp SCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHH
T ss_conf 79345566789999999999999999999999999999999999999999888734993332167888488885025059
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 39999898787532103443467357999999999999999999999988427878899898999999998705312689
Q 000860 432 PLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKE 511 (1250)
Q Consensus 432 p~~~~~~~i~~~i~y~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~~~~~~~~~~~l~~gf~i~~~ 511 (1250)
.. + ... +. .....++..++.. ....+....-+...+.. .+...+++.+..+.....
T Consensus 864 ~~-i-~~~----l~-------~~l~~~~~~~~~~---------i~~~~~~~~~~~~l~lv--~l~~~~~~~~~~~~~~~~ 919 (1321)
T 4f4c_A 864 PN-L-RTA----ID-------FRFSTVITTLVSM---------VAGIGLAFFYGWQMALL--IIAILPIVAFGQYLRGRR 919 (1321)
T ss_dssp HH-H-HTT----TS-------HHHHHHHHHHHHH---------HHHHHHHHHHCHHHHHH--HHHHHHHHHHHHHHHTSC
T ss_pred HH-H-HHH----HH-------HHHHHHHHHHHHH---------HHHEEEEHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 99-9-999----99-------9999999986537---------77702213786899999--999888999999999999
Q ss_pred CCCCCHHHHHHHCH-HHHHHHHH----HHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHH--HHHHHH-HH
Q ss_conf 97410134360299-99999998----774058864431378764321000001256678873157899--999999-99
Q 000860 512 SIKSWWIWMYWVSP-LSYGQSAI----SVNEFTATRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGV--GVMLLY-AW 583 (1250)
Q Consensus 512 ~i~~~~~w~~~isp-~~y~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~--~vll~~-~~ 583 (1250)
............+. ..+..+.+ .+..|......... -...++...-.......+.+. +..... .+
T Consensus 920 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1321)
T 4f4c_A 920 FTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYEN-------FCEKLDIPHKEAIKEAFIQGLSYGCASSVLYL 992 (1321)
T ss_dssp CSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999888988999999627988861414889999-------99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCC--------------------CCCCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999998428--------------------7767653224652000100-01444556655456776667777765
Q 000860 584 LFNNIMTLALAYLN--------------------PLRKSQVVIQSDDREENSV-KKGVASQGCELKTTSSREDGKKKGMI 642 (1250)
Q Consensus 584 ~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1250)
.......++..... ................+.. ........ .+..++.......+..
T Consensus 993 ~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~--l~~~~~~~~~~~~~~~ 1070 (1321)
T 4f4c_A 993 LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGM--LRKISKIDSLSLAGEK 1070 (1321)
T ss_dssp HHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHH--HHCCCSSCTTCCCSBC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCC
T ss_conf 99999987578875376542147899999999877889999999999999999999989998--6076657776677878
Q ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 68787069999599999278321112544333412100389995773999996999958999998959999980689999
Q 000860 643 MPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 722 (1250)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~ 722 (1250)
+.....++|+||+++|+.. ...++|+|+|++++|||++||+||||||||||+++|.|... ..+|+|.
T Consensus 1071 -~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~ 1137 (1321)
T 4f4c_A 1071 -KKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIF 1137 (1321)
T ss_dssp -CCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEE
T ss_pred -CCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEE
T ss_conf -8888818999879857999----------98821245169988989999989999819999999956863--8997899
Q ss_pred ECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCC
Q ss_conf 97913781---122332889747987898999999999998628999999888999999999981994-------32222
Q 000860 723 ISGYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHA 792 (1250)
Q Consensus 723 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~-------~~~~~ 792 (1250)
+||.+++. ..+|+.++|||||+.++. .|++||+.|.. .|.+.++++ +.++++..++. +-.|+
T Consensus 1138 iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT 1209 (1321)
T 4f4c_A 1138 IDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTMAQ----VEEAARLANIHNFIAELPEGFET 1209 (1321)
T ss_dssp ETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCS
T ss_pred ECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCHHH----HHHHHHHHCCHHHHHCCCCCCCC
T ss_conf 99998654999999854599878997327-23999974549---999999999----99999982984999717678999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCE
Q ss_conf 34699987679789899999999951996778839999999999999999999986289889998068988999962030
Q 000860 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 793 ~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
.+|..+ ..||||||||++|||||+++|+||+||||||+||+.|...|++.+++.. +++|+|+++|+.+ ....+|+|
T Consensus 1210 ~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I 1285 (1321)
T 4f4c_A 1210 RVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCI 1285 (1321)
T ss_dssp EETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEE
T ss_pred EECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEE
T ss_conf 823889-1569999999999999971799899968111578999999999999973-9998999606899--99969999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 153239589990889
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|++ |+++..|+.
T Consensus 1286 ~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1286 AVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EEESS-SSEEEEECH
T ss_pred EEEEC-CEEEEECCH
T ss_conf 99989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=584.28 Aligned_cols=215 Identities=27% Similarity=0.390 Sum_probs=171.2
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 06999959999927832111254433341210038999577399999699995899999895999998068999997913
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|++++|+.. ...++|+|+|+.+++||++||+||||||||||+++|+|... ..+|+|.++|.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEE
T ss_conf 857999989977999----------98700203059976998899988999978999999946867--899779899998
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCC
Q ss_conf 781---1223328897479878989999999999986289999998889999999999819-------943222234699
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-------LDSLRHALVGSP 797 (1250)
Q Consensus 728 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~-------l~~~~~~~~g~~ 797 (1250)
++. ..+++.++||+|++.+++ .|++||+.+.... ...+.++.. +.++..+ +..-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred CCCCCHHHHHHCEEEECCCCCCCC-CCHHHHHHCCCCC---CCCCHHHHH----HHHHHHCCHHHHHHCCCCCCCCCCCC
T ss_conf 000789999702689877874066-6699997466877---899999999----99998395999972704245611788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 98767978989999999995199677883999999999999999999998628988999806898899996203015323
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
+ ..||||||||++|||+|+++|+||+|||||+|||..+...+++.+++. ..|+|+|+++|+++. + ..+|++++|.+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN 1244 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC
T ss_conf 8-933899999999999997499999986875557999999999999986-799989999558799-9-80998999989
Q ss_pred CCEEEEECCC
Q ss_conf 9589990889
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 1245 -G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 -GKVKEHGTH 1253 (1284)
T ss_dssp -BEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=449.48 Aligned_cols=422 Identities=22% Similarity=0.240 Sum_probs=296.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCEECCCC-----CCCCEEEEECCCCCCCC---CCC
Q ss_conf 999827999996899989819989998601499---------9889205743-----31122786565445588---898
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSI---------TYNGWELDEF-----QVQRASAYIGQTDNHIA---ELT 63 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I---------~inG~~~~~~-----~~~~~~~yv~Q~d~~~~---~lT 63 (1250)
+++|+||||||||||+++|+|...|. +|++ .++|.++... ..+..+++++|.....+ ..|
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEEECHHHHCHHHCCCC
T ss_conf 99999999972999999985799878---785466630133136877613432345565344688632043130220050
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89999999871289864246767642999840269990257877431037876544199999981994445553378765
Q 000860 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEML 143 (1250)
Q Consensus 64 VrEnL~F~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~ 143 (1250)
|+|++... . ....++++|+.+||++..+..+++
T Consensus 196 v~e~l~~~----~----------------------------------------~~~~~~~~L~~lgL~~~~~~~~~~--- 228 (607)
T 3bk7_A 196 VRELLKKV----D----------------------------------------EVGKFEEVVKELELENVLDRELHQ--- 228 (607)
T ss_dssp HHHHHHHT----C----------------------------------------CSSCHHHHHHHTTCTTGGGSBGGG---
T ss_pred HHHHHHHH----H----------------------------------------HHHHHHHHHHHCCCCCHHCCCHHH---
T ss_conf 99996316----7----------------------------------------999999999975997043798056---
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 44762320146999987349807564179856027989999999999877089899999518993478201246884398
Q 000860 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDG 223 (1250)
Q Consensus 144 ~~LSGGQKqRisIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G 223 (1250)
||||||||++||+||+.+|++++|||||++||+.++..+++.|+++.+ .|.|+|++.|. ...+...+|+|++|.++
T Consensus 229 --LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 229 --LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp --CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEESC
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEECCC
T ss_conf --999999999999998459999999797435899999999999999986-69989999648-58988658999997798
Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC
Q ss_conf 07855482139999883999999999902278760591224332003899977889879999997282223258520597
Q 000860 224 YLVYQGPRAEVLEFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVP 303 (1250)
Q Consensus 224 ~iv~~G~~~~l~~~f~~~G~~~p~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1250)
... +|.... +
T Consensus 305 ~~~-~g~~~~-----------------~---------------------------------------------------- 314 (607)
T 3bk7_A 305 PGV-YGIFSK-----------------P---------------------------------------------------- 314 (607)
T ss_dssp TTT-EEEECC-----------------C----------------------------------------------------
T ss_pred CCC-CCEECC-----------------C----------------------------------------------------
T ss_conf 644-521224-----------------1----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88898997732346765508999999999999999217357999999999999998876524578988711102587999
Q 000860 304 FDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCH 383 (1250)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~~f~~~~~~~~~~~~~~~~~~~~ 383 (1250)
... ..... .+.
T Consensus 315 ---------------~~~--~~~i~---------------------------------~~~------------------- 325 (607)
T 3bk7_A 315 ---------------KGT--RNGIN---------------------------------EFL------------------- 325 (607)
T ss_dssp ---------------EEH--HHHHH---------------------------------HHH-------------------
T ss_pred ---------------HHH--HHHHH---------------------------------HHH-------------------
T ss_conf ---------------327--99999---------------------------------997-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999999987441878630013689853089977048999999999739999898787532103443467357999999
Q 000860 384 FFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYML 463 (1250)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~lp~~~~~~~i~~~i~y~~~~l~~~~~~f~~~~~ 463 (1250)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999998842787889989899999999870531268997410134360299999999987740588644
Q 000860 464 LLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRW 543 (1250)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~i~~~~~~a~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~isp~~y~~~~~~~~~~~~~~~ 543 (1250)
.++. +.... +
T Consensus 326 ----------------------------------------~~~~-~~~~~----------------------------~- 335 (607)
T 3bk7_A 326 ----------------------------------------QGYL-KDENV----------------------------R- 335 (607)
T ss_dssp ----------------------------------------HTEE-TTTTE----------------------------E-
T ss_pred ----------------------------------------HHCC-HHHHH----------------------------H-
T ss_conf ----------------------------------------5101-34554----------------------------3-
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 31378764321000001256678873157899999999999999999999842877676532246520001000144455
Q 000860 544 MKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQ 623 (1250)
Q Consensus 544 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~vll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1250)
+ .....
T Consensus 336 --------------------~------------------------------------------~~~~~------------ 341 (607)
T 3bk7_A 336 --------------------F------------------------------------------RPYEI------------ 341 (607)
T ss_dssp --------------------C------------------------------------------CSSCC------------
T ss_pred --------------------C------------------------------------------CCCCC------------
T ss_conf --------------------0------------------------------------------12123------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHH
Q ss_conf 66554567766677777656878706999959999927832111254433341210038999577399999699995899
Q 000860 624 GCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTT 703 (1250)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsT 703 (1250)
.... . .+. .. ......++++|+++.+. . ..|+++|+.+++||+++|+|||||||||
T Consensus 342 ~~~~--~-~~~-~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKST 397 (607)
T 3bk7_A 342 RFTK--L-SER-VD------VERETLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTT 397 (607)
T ss_dssp CCCC--S-TTS-CC------CCCCEEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHH
T ss_pred CCCC--C-CCC-CC------CCCCEEEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHH
T ss_conf 4565--7-775-44------46752899913098744-------------3-4899351532799899999999989999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99989599999806899999791378112233288974798789899999999999862899999988899999999998
Q 000860 704 LMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783 (1250)
Q Consensus 704 Ll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~ 783 (1250)
|+++|+|...+ .+|+|.+ .+.++|++|+....+.+||.|++....... ....+.++++++.
T Consensus 398 Llk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 398 FVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKP 458 (607)
T ss_dssp HHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHH
T ss_pred HHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHH
T ss_conf 99999669888--8628999----------027999805766778984999997531258-------7789999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCC
Q ss_conf 199432222346999876797898999999999519967788399999999999999999999862-8988999806898
Q 000860 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPS 862 (1250)
Q Consensus 784 l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~ 862 (1250)
+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+...+.+.++++++ .|.|||+++|+..
T Consensus 459 ~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 459 LGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp HTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 699337549922-----379999999999999974899899968744789999999999999999747989999909899
Q ss_pred HHHHHHHCCEEEEEC-CCEEEEECCCC
Q ss_conf 899996203015323-95899908898
Q 000860 863 IEIFEAFDELLLMKR-GGRVIYGGKLG 888 (1250)
Q Consensus 863 ~~~~~~~d~v~~l~~-gg~~~~~g~~~ 888 (1250)
++...+|++++|.. .|.+...|++.
T Consensus 534 -~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 534 -MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp -HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred -HHHHHCCEEEEECCCCCEEEECCCHH
T ss_conf -99986999999959830697428989
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=445.69 Aligned_cols=216 Identities=23% Similarity=0.247 Sum_probs=168.1
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++..+.. ..|+.+|+.+++||+++|+||||||||||+++|+|... ..+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~~--------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred EEEECCEEEEECC--------------EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE--
T ss_conf 6998233999798--------------89982664688998999999999989999999957888--99818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122332889747987898999999999998628999999888999999999981994322223469998767978989
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~ 808 (1250)
.++|++|+......+||+|++.+..... ... ....++++++.+++.+..+..++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHC----CCH--HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf -------5676140003454777999998755311----211--69999999987599778628932-----27999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECC-CEEEEECC
Q ss_conf 99999999519967788399999999999999999999862-89889998068988999962030153239-58999088
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRG-GRVIYGGK 886 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g-g~~~~~g~ 886 (1250)
|++||++|+.+|++|+|||||+|||..+...+++.++++++ .|.|||+++|+.. ++...+|++++|..+ +.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 986504699896218
Q 000860 887 LGVHSQIMIDYFQGL 901 (1250)
Q Consensus 887 ~~~~~~~~~~yf~~~ 901 (1250)
+......+..|+...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=444.09 Aligned_cols=422 Identities=22% Similarity=0.244 Sum_probs=295.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCEECCCC-----CCCCEEEEECCCCCCCCC---CC
Q ss_conf 999827999996899989819989998601499---------9889205743-----311227865654455888---98
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSI---------TYNGWELDEF-----QVQRASAYIGQTDNHIAE---LT 63 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I---------~inG~~~~~~-----~~~~~~~yv~Q~d~~~~~---lT 63 (1250)
+++|+||||||||||+++|+|...|. +|++ .++|.++... ..+..++++.|.....+. .|
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
T ss_conf 99999999997999999996799888---886675314567761884077778788887444665322343210121121
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89999999871289864246767642999840269990257877431037876544199999981994445553378765
Q 000860 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEML 143 (1250)
Q Consensus 64 VrEnL~F~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~ 143 (1250)
++|++.... ....++++|+.+||++..+..+++
T Consensus 126 v~e~~~~~~--------------------------------------------~~~~~~~~l~~lgl~~~~~~~~~~--- 158 (538)
T 1yqt_A 126 VIELLKKAD--------------------------------------------ETGKLEEVVKALELENVLEREIQH--- 158 (538)
T ss_dssp HHHHHHHHC--------------------------------------------SSSCHHHHHHHTTCTTTTTSBGGG---
T ss_pred HHHHHHHHH--------------------------------------------HHHHHHHHHHHCCCCHHHHCCHHH---
T ss_conf 999974313--------------------------------------------999999999876997366098354---
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 44762320146999987349807564179856027989999999999877089899999518993478201246884398
Q 000860 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDG 223 (1250)
Q Consensus 144 ~~LSGGQKqRisIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G 223 (1250)
||||||||++||+||+.+|++++|||||++||+.++..+++.|+++.+ .|.|+|++.|. ..++...+|+|++|.+|
T Consensus 159 --LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 159 --LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp --CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEECCC
T ss_conf --899999999999998469999999897345798899999999999996-59879999478-89999768899998686
Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC
Q ss_conf 07855482139999883999999999902278760591224332003899977889879999997282223258520597
Q 000860 224 YLVYQGPRAEVLEFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVP 303 (1250)
Q Consensus 224 ~iv~~G~~~~l~~~f~~~G~~~p~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1250)
...+ |... .+
T Consensus 235 ~~~~-~~~~-----------------~~---------------------------------------------------- 244 (538)
T 1yqt_A 235 PGVY-GIFS-----------------QP---------------------------------------------------- 244 (538)
T ss_dssp TTTE-EEEC-----------------CC----------------------------------------------------
T ss_pred CCCC-CCCC-----------------CH----------------------------------------------------
T ss_conf 3244-0225-----------------53----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88898997732346765508999999999999999217357999999999999998876524578988711102587999
Q 000860 304 FDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCH 383 (1250)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~~f~~~~~~~~~~~~~~~~~~~~ 383 (1250)
... ..... . ..
T Consensus 245 ---------------~~~--~~~~~-------------------~--------~~------------------------- 255 (538)
T 1yqt_A 245 ---------------KGT--RNGIN-------------------E--------FL------------------------- 255 (538)
T ss_dssp ---------------EEH--HHHHH-------------------H--------HH-------------------------
T ss_pred ---------------HHH--HHHHH-------------------H--------HH-------------------------
T ss_conf ---------------558--99999-------------------8--------76-------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999999987441878630013689853089977048999999999739999898787532103443467357999999
Q 000860 384 FFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYML 463 (1250)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~lp~~~~~~~i~~~i~y~~~~l~~~~~~f~~~~~ 463 (1250)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999998842787889989899999999870531268997410134360299999999987740588644
Q 000860 464 LLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRW 543 (1250)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~i~~~~~~a~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~isp~~y~~~~~~~~~~~~~~~ 543 (1250)
.+... ... .
T Consensus 256 ----------------------------------------~~~~~-~~~--~---------------------------- 264 (538)
T 1yqt_A 256 ----------------------------------------RGYLK-DEN--V---------------------------- 264 (538)
T ss_dssp ----------------------------------------HTEET-TTT--E----------------------------
T ss_pred ----------------------------------------HHCCC-HHH--H----------------------------
T ss_conf ----------------------------------------40230-023--2----------------------------
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 31378764321000001256678873157899999999999999999999842877676532246520001000144455
Q 000860 544 MKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQ 623 (1250)
Q Consensus 544 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~vll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1250)
. . .....
T Consensus 265 -----------~--------~------------------------------------------~~~~~------------ 271 (538)
T 1yqt_A 265 -----------R--------F------------------------------------------RPYEI------------ 271 (538)
T ss_dssp -----------E--------C------------------------------------------SSSCC------------
T ss_pred -----------C--------C------------------------------------------CCCCC------------
T ss_conf -----------0--------3------------------------------------------44455------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHH
Q ss_conf 66554567766677777656878706999959999927832111254433341210038999577399999699995899
Q 000860 624 GCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTT 703 (1250)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsT 703 (1250)
.... .... .. +.....++++|+++.+.. ..|+.+|+.+++||+++|+|||||||||
T Consensus 272 ~~~~---~~~~-~~------~~~~~~l~~~~l~~~~~~--------------~~l~~~~~~i~~Ge~~~i~G~NGsGKST 327 (538)
T 1yqt_A 272 KFTK---TGER-VE------IERETLVTYPRLVKDYGS--------------FRLEVEPGEIKKGEVIGIVGPNGIGKTT 327 (538)
T ss_dssp CCCC---SSGG-GS------SCCCEEEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHH
T ss_pred CCCC---CCCC-CC------CCCCEEEEEEEEEEEECC--------------EEEEECCCCCCCCCEEEEECCCCCCHHH
T ss_conf 5455---7765-56------678718999307999899--------------8999074412899899998899999999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99989599999806899999791378112233288974798789899999999999862899999988899999999998
Q 000860 704 LMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783 (1250)
Q Consensus 704 Ll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~ 783 (1250)
|+++|+|..++ ..|+|.+ ...++||+|+....+.+||.|++........ ...+.++++++.
T Consensus 328 Llk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~ 388 (538)
T 1yqt_A 328 FVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKP 388 (538)
T ss_dssp HHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTT
T ss_pred HHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHH
T ss_conf 99999679989--9718998----------7469998267767888859999986403688-------789999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCC
Q ss_conf 199432222346999876797898999999999519967788399999999999999999999862-8988999806898
Q 000860 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPS 862 (1250)
Q Consensus 784 l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~ 862 (1250)
+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|+..
T Consensus 389 ~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 389 LGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 463 (538)
T ss_dssp TTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 499156539944-----489999999999999972899899939801089999999999999999867989999939899
Q ss_pred HHHHHHHCCEEEEEC-CCEEEEECCCC
Q ss_conf 899996203015323-95899908898
Q 000860 863 IEIFEAFDELLLMKR-GGRVIYGGKLG 888 (1250)
Q Consensus 863 ~~~~~~~d~v~~l~~-gg~~~~~g~~~ 888 (1250)
++...+|++++|.+ .|.+...|++.
T Consensus 464 -~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 464 -MIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp -HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred -HHHHHCCEEEEEECCCCEEEECCCHH
T ss_conf -99996899999908831574048989
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=441.67 Aligned_cols=411 Identities=21% Similarity=0.277 Sum_probs=286.0
Q ss_pred CEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999827999996899989819-98999860149998892057433112278656544-5588898899999998712898
Q 000860 1 MTLLLGPPGSGKSTLLLALAG-KLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTD-NHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G-~~~~~~~~~G~I~inG~~~~~~~~~~~~~yv~Q~d-~~~~~lTVrEnL~F~a~l~~~~ 78 (1250)
+++|+||||||||||+++|+| .. +|.+... +..++|++|+. ..++.+||.|++.+ ...+.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i------------~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~- 524 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV------------DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT- 524 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS------------TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCCH-
T ss_conf 899999999879999999948986------------7976635---41699973564324557809999998--61279-
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 64246767642999840269990257877431037876544199999981994-44555337876544762320146999
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~-~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
...++++|+.+||. +..+..+++ ||||||||++||
T Consensus 525 ---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLA 560 (986)
T 2iw3_A 525 ---------------------------------------KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALA 560 (986)
T ss_dssp ---------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHH
T ss_conf ---------------------------------------999999999869984464398020-----799999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEE-EECCHHHHHH
Q ss_conf 987349807564179856027989999999999877089899999518993478201246884398078-5548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLV-YQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv-~~G~~~~l~~ 236 (1250)
++++.+|++++|||||+|||..++..+++.|+. .|.|+|++.|. ..++...+|++++|.+|+++ +.|+.++...
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCEEECCCCCHHHHHH
T ss_conf 999649999999797667999999999999986----79989999798-8999986899999979944267799999986
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 98839999999999022787605912243320038999778898799999972822232585205978889899773234
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALAT 316 (1250)
Q Consensus 237 ~f~~~G~~~p~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1250)
... .... .
T Consensus 636 ~~~------------------------~~~~-----------------------------------~------------- 643 (986)
T 2iw3_A 636 KCP------------------------AAKA-----------------------------------Y------------- 643 (986)
T ss_dssp HCG------------------------GGGG-----------------------------------S-------------
T ss_pred HHH------------------------HHHH-----------------------------------H-------------
T ss_conf 148------------------------8999-----------------------------------9-------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67655089999999999999992173579999999999999988765245789887111025879999999999998744
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFS 396 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1250)
+... ....
T Consensus 644 -----------------------------------------------~~l~--~~~~----------------------- 651 (986)
T 2iw3_A 644 -----------------------------------------------EELS--NTDL----------------------- 651 (986)
T ss_dssp -----------------------------------------------SSTT--TCCC-----------------------
T ss_pred -----------------------------------------------HHHH--HHHH-----------------------
T ss_conf -----------------------------------------------8644--5443-----------------------
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18786300136898530899770489999999997399998987875321034434673579999999999999999999
Q 000860 397 ELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLY 476 (1250)
Q Consensus 397 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~lp~~~~~~~i~~~i~y~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~ 476 (1250)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988427878899898999999998705312689974101343602999999999877405886443137876432100
Q 000860 477 RMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGY 556 (1250)
Q Consensus 477 ~~l~~i~~~~~~a~~~~~~~~~~~~l~~gf~i~~~~i~~~~~w~~~isp~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 556 (1250)
. +
T Consensus 652 --------------------------------------~---------------------------~------------- 653 (986)
T 2iw3_A 652 --------------------------------------E---------------------------F------------- 653 (986)
T ss_dssp --------------------------------------C---------------------------C-------------
T ss_pred --------------------------------------H---------------------------C-------------
T ss_conf --------------------------------------2---------------------------0-------------
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012566788731578999999999999999999998428776765322465200010001444556655456776667
Q 000860 557 NVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG 636 (1250)
Q Consensus 557 ~~l~~~~~~~~~~~~w~~~~vll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1250)
.+ ... .. . .. .
T Consensus 654 ------~~------------------------------------------p~~--------------~~-~----~~--~ 664 (986)
T 2iw3_A 654 ------KF------------------------------------------PEP--------------GY-L----EG--V 664 (986)
T ss_dssp ------CC------------------------------------------CCC--------------CC-C----TT--C
T ss_pred ------CC------------------------------------------CCC--------------CC-C----CC--C
T ss_conf ------35------------------------------------------655--------------54-3----34--5
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCE
Q ss_conf 77776568787069999599999278321112544333412100389995773999996999958999998959999980
Q 000860 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 716 (1250)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~ 716 (1250)
... ....++++|++++++. ..+++|+++|+.+++|++++|+||||||||||+++|+|... .
T Consensus 665 ~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P 725 (986)
T 2iw3_A 665 KTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--P 725 (986)
T ss_dssp CST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--C
T ss_pred CCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--C
T ss_conf 667------8706999846998189-----------87413432279982897899989999879999999957988--8
Q ss_pred EEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHCC------------CC---------------
Q ss_conf 689999979137811223328897479878----98999999999998628------------99---------------
Q 000860 717 IEGDIKISGYPKEQSTFARISGYVEQEDVH----SPQVTIEESLWFSANLR------------LP--------------- 765 (1250)
Q Consensus 717 ~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~----~~~ltv~e~l~~~~~l~------------~~--------------- 765 (1250)
.+|+|.++|. ..++|++|+... ....|+++++.+.-... +.
T Consensus 726 ~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g 797 (986)
T 2iw3_A 726 TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEG 797 (986)
T ss_dssp SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETT
T ss_pred CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 8608998686--------42576313024332100114799998877504502555543321034355544200011232
Q ss_pred -------------------------------------CCCC----------------------------------HHHHH
Q ss_conf -------------------------------------9999----------------------------------88899
Q 000860 766 -------------------------------------KEIS----------------------------------KDQRH 774 (1250)
Q Consensus 766 -------------------------------------~~~~----------------------------------~~~~~ 774 (1250)
...+ .....
T Consensus 798 ~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~ 877 (986)
T 2iw3_A 798 TPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTR 877 (986)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 01234444555431222002100025543200000123432344321016777666766554432455543022323479
Q ss_pred HHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999819943-2-222346999876797898999999999519967788399999999999999999999862898
Q 000860 775 EFVEEVMSLVELDS-L-RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852 (1250)
Q Consensus 775 ~~v~~~~~~l~l~~-~-~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~ 852 (1250)
+.++++++.+||.. . .+..++ .||||||||++||++|+.+|++|+|||||+|||..+...+.+.++++ +.
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~ 949 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EG 949 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SS
T ss_pred HHHHHHHHHCCCCCHHHCCCCCC-----CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CC
T ss_conf 99999999769980544489804-----23999999999999998399999997986577999999999999974---99
Q ss_pred EEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 8999806898899996203015323958999088
Q 000860 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 853 tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 950 tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 950 GVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp EEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred EEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 7999979899-99985899999989-99998687
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=431.10 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=141.9
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC-----------CCC------CC--EEEEEEEECCCCCCCCCCC-
Q ss_conf 412100389995773999996999958999998959-----------999------98--0689999979137811223-
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG-----------RKT------GG--YIEGDIKISGYPKEQSTFA- 734 (1250)
Q Consensus 675 ~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g-----------~~~------~~--~~~G~i~~~g~~~~~~~~~- 734 (1250)
..+|+++|+.+++||+++|+||||||||||+++|.+ ... .+ ...+.+.+++.+.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred CCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 01234541674589889999117988889999998998887754202454443210121246752674056677887764
Q ss_pred -------------------------------------------CEEEEECCCCCCC------------------------
Q ss_conf -------------------------------------------3288974798789------------------------
Q 000860 735 -------------------------------------------RISGYVEQEDVHS------------------------ 747 (1250)
Q Consensus 735 -------------------------------------------~~~~~v~q~~~~~------------------------ 747 (1250)
...+++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 15342046789998612513333166611144357777565135663474202225555110565567554744442021
Q ss_pred --------CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------899999999999862899999988899999999998199432-22234699987679789899999999951
Q 000860 748 --------PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFGLSTEQRKRLTIAVELVA 818 (1250)
Q Consensus 748 --------~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~-~~~~~g~~~~~~lSgGqr~r~~ia~~l~~ 818 (1250)
..+||.|++.+.... . ..+.+.+.+..+++... .+..++ .||||||||++||++|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHCCHHHHHHHHHHH-------H--HHHHHHHHHHHCCCCHHHCCCCCH-----HCCHHHHHHHHHHHHHHH
T ss_conf 57778887647799999999874-------6--578999999986996012049701-----289999999999999960
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf 99---67788399999999999999999999862898899980689889999620301532-----39589990889
Q 000860 819 NP---SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKL 887 (1250)
Q Consensus 819 ~p---~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 887 (1250)
+| ++|+|||||+|||+.+...+++.++++.+.|.|||+++|+++ ....+|++++|. ++|+++..|++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88899489996987799999999999999999977998999959889--9985999999657767889889996699
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=429.19 Aligned_cols=202 Identities=18% Similarity=0.216 Sum_probs=156.6
Q ss_pred CEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 1210038999577-----39999969999589999989599999806899999791378112233288974798789899
Q 000860 676 QLLSNVSGIFSPG-----VLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQV 750 (1250)
Q Consensus 676 ~iL~~vs~~~~~G-----~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 750 (1250)
..++++|+.+++| |+++|+||||||||||+++|+|...+ .+|+ +.. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--7885------866----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999986289999998889999999999819943222234699987679789899999999951996778839999
Q 000860 751 TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 751 tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTs 830 (1250)
||+|++... .+. ... ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---68999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 9999999999999999862-8988999806898899996203015323-9589990889865046998962189
Q 000860 831 GLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKR-GGRVIYGGKLGVHSQIMIDYFQGLD 902 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~~~~~~~~~~yf~~~~ 902 (1250)
|||..+...+++.++++++ .|.|||+++|+.. ++...+|++++|.. .|+++..|++..--..+..++..++
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~ 569 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 899999999999999999757998999968899-9998689999995898737742986998630468997548
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=350.72 Aligned_cols=196 Identities=28% Similarity=0.429 Sum_probs=143.5
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCC--CCC--EEE------EEEEECCCCCCCCC----
Q ss_conf 121003899957739999969999589999---------9895999--998--068------99999791378112----
Q 000860 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM---------DVLAGRK--TGG--YIE------GDIKISGYPKEQST---- 732 (1250)
Q Consensus 676 ~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl---------~~l~g~~--~~~--~~~------G~i~~~g~~~~~~~---- 732 (1250)
..|+++|+.+++|++++|+|+||||||||+ +.+.+.. .++ ... +.+.++..++....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -----------------------------C-----------CCEEEEECCCCCCCC------------------------
Q ss_conf -----------------------------2-----------332889747987898------------------------
Q 000860 733 -----------------------------F-----------ARISGYVEQEDVHSP------------------------ 748 (1250)
Q Consensus 733 -----------------------------~-----------~~~~~~v~q~~~~~~------------------------ 748 (1250)
+ .+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf --------999999999998628999999888999999999981994322-22346999876797898999999999519
Q 000860 749 --------QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR-HALVGSPGSFGLSTEQRKRLTIAVELVAN 819 (1250)
Q Consensus 749 --------~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~-~~~~g~~~~~~lSgGqr~r~~ia~~l~~~ 819 (1250)
.+||.|++.|.... .....+.++++.+||.... +... ..||||||||+.||++|+++
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHC
T ss_conf 6777877407799999987515---------058999999998188633316871-----57999999999999999628
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf 9---67788399999999999999999999862898899980689889999620301532-----39589990889
Q 000860 820 P---SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKL 887 (1250)
Q Consensus 820 p---~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 887 (1250)
| ++++|||||+|||..+...+++.|+++.+.|.|||+++|++ +....+|++++|. +||+++..|++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 788978999798889999999999999999996699899993799--99972999999668777789789997699
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=344.12 Aligned_cols=195 Identities=29% Similarity=0.407 Sum_probs=145.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHH-C----C-----CCCC---EEEE------EEEECCCCCCCCC-----
Q ss_conf 210038999577399999699995899999895-9----9-----9998---0689------9999791378112-----
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA-G----R-----KTGG---YIEG------DIKISGYPKEQST----- 732 (1250)
Q Consensus 677 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~----- 732 (1250)
.|+++|+.+++||+++|+|+||||||||+++|. | . ...+ .+.| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCH
T ss_conf 64662599868989999927999889999999999998762477778885014226434453899758444667555601
Q ss_pred -----------------CCCEEEEECCCCCCC----------------------C-------------------------
Q ss_conf -----------------233288974798789----------------------8-------------------------
Q 000860 733 -----------------FARISGYVEQEDVHS----------------------P------------------------- 748 (1250)
Q Consensus 733 -----------------~~~~~~~v~q~~~~~----------------------~------------------------- 748 (1250)
..+..+|++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 22137899999861188988725454324435555655212466503410111665310021124643340223331067
Q ss_pred -------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -------9999999999986289999998889999999999819943-22223469998767978989999999995199
Q 000860 749 -------QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTEQRKRLTIAVELVANP 820 (1250)
Q Consensus 749 -------~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~-~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p 820 (1250)
.+|+.|++.|... . . ....+.++++.++|.. ..+..++ .||||||||+.||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHCCHHHHHHHHHC------C-H--HHHHHHHHHHHCCCCCCCCCCCHH-----HCCHHHHHHHHHHHHHHCCC
T ss_conf 77787650679999998751------3-3--689999999985998211027040-----19999999999999995388
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf ---67788399999999999999999999862898899980689889999620301532-----39589990889
Q 000860 821 ---SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKL 887 (1250)
Q Consensus 821 ---~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 887 (1250)
++++|||||+|||..+...+++.|+++.+.|.|||+++|+.. ....+|++++|. ++|+++..|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 899889997987899999999999999999967998999868879--9984999999767777789889986599
Done!