BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000861
(1249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 37/267 (13%)
Query: 824 RGILVAHLQEH-CSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL 881
RG L+A L E+ +++ A+S + + ++ SD +K+W+ +++ + S LTY
Sbjct: 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDC 110
Query: 882 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 941
+ TM+ A V + DG I + V+H Y S++K + +
Sbjct: 111 SSTVTQITMIPNFDA-FAVSSKDGQIIVLKVNH----------YQQESEVKFLNCECIRK 159
Query: 942 VTLVNYNTDNCASHMFMYSTQNCG----------IHLWDTRSNSNTWTLKAIPEEGYVSS 991
+ L N+ + A M + + + ++D R+ ++ P G VSS
Sbjct: 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219
Query: 992 LVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE--KMCLFVPPPNAAVSTT 1049
+ + G++RG++ +WD+RF V + SW + PI ++C F
Sbjct: 220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY---------- 269
Query: 1050 ARPLIYVAAGCNE--VSLWNAENGSCH 1074
+ + V G ++ +++WN G C
Sbjct: 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQ 296
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 114
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 159
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 160 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 216 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 267
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 268 KEIVQKLQ 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 111
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 156
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 157 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 213 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 264
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 265 KEIVQKLQ 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 115
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 160
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 161 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 217 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 269 KEIVQKLQ 276
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 120
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 165
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 166 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 222 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 274 KEIVQKLQ 281
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 132
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 177
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 178 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 234 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 285
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 286 KEIVQKLQ 293
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 115
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 160
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 161 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 217 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 269 KEIVQKLQ 276
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 116
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 161
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 162 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 218 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 269
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 270 KEIVQKLQ 277
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 139
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 140 NPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSD-------------PVSAVHFNRD- 184
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 185 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 241 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 293 KEIVQKLQ 300
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 808 PSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR-- 865
PS T S P + +P L L H AV+ + S + + S+S D +K+W +
Sbjct: 21 PSSSATQSKP-TPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 79
Query: 866 KLEKDIS 872
K EK IS
Sbjct: 80 KFEKTIS 86
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 137
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 138 NPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSD-------------PVSAVHFNRD- 182
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 183 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 239 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 291 KEIVQKLQ 298
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 808 PSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR-- 865
PS T S P + +P L L H AV+ + S + + S+S D +K+W +
Sbjct: 19 PSSSATQSKP-TPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 77
Query: 866 KLEKDIS 872
K EK IS
Sbjct: 78 KFEKTIS 84
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 234
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + ++P L +D VR A +L + + + L K
Sbjct: 235 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQ--HVKSALASVIM 349
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409
Query: 449 ALSDA 453
DA
Sbjct: 410 LAEDA 414
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V +G+ K V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK------------TGMC--LKTLPAHSDPVSAVHFNRD- 163
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 822 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR--KLEKDIS 872
+P L+ L H AV+ + S + + S+S D +K+W + K EK IS
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 235
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + ++P L +D VR A +L + + + L K
Sbjct: 236 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 292
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 293 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVIM 350
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 351 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410
Query: 449 ALSDA 453
DA
Sbjct: 411 LAEDA 415
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 235
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + ++P L +D VR A +L + + + L K
Sbjct: 236 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 292
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 293 DCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQ--HVKSALASVIM 350
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 351 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410
Query: 449 ALSDA 453
DA
Sbjct: 411 LAEDA 415
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 172 PXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQL---L 228
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + + P L +D VR A +L + + + L K
Sbjct: 229 PQEDLEAL---VXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXK 285
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 286 DCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQ--HVKSALASVIX 343
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 344 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 403
Query: 449 ALSDA 453
DA
Sbjct: 404 LAEDA 408
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 234
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + ++P L +D VR A +L + + + L K
Sbjct: 235 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVIM 349
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409
Query: 449 ALSDA 453
DA
Sbjct: 410 LAEDA 414
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 12/247 (4%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 228
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA--GVL 326
P D + ++P L +D VR A +L A G + L A ++
Sbjct: 229 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 284
Query: 327 DKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQD 386
A ++ ++S++ + L+AD + + + I ++ELV Q ++ AL
Sbjct: 285 KDCEAEVRA-AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASV 341
Query: 387 IGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYI 446
I L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 342 IMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 401
Query: 447 EQALSDA 453
+ DA
Sbjct: 402 VELAEDA 408
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 209 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 226
Query: 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 328
P D + ++P L +D VR A +L + + + L K
Sbjct: 227 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 283
Query: 329 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 284 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVIM 341
Query: 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 342 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 401
Query: 449 ALSDA 453
DA
Sbjct: 402 LAEDA 406
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 891
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951
S +V G+ D + ++ V +G+ K V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK------------TGMC--LKTLPAHSDPVSAVHFNRD- 163
Query: 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1010
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 1071 GSCHQVLR 1078
Q L+
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 822 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR--KLEKDIS 872
+P L+ L H AV+ + S + + S+S D +K+W + K EK IS
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH 880
W G L+ L H S+V +A S D SASDD TVK+W+ ++ LT H
Sbjct: 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGH 261
Query: 881 LEGSRALCTMMLRHSAQVVVGACD 904
S ++ + R Q + A D
Sbjct: 262 ---SSSVNGVAFRPDGQTIASASD 282
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+VN +A D SASDD TVK+W+
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 453 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 494 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 412 WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 43 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G + L H S+V +A S D SASDD TVK+W+
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
L+ H S+V +A S D SASDD TVK+W+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W G L+ L H S+V +A S D SAS D TVK+W+
Sbjct: 535 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 773 ASVNCKFPEMGTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQ 832
A ++ +F +K SI V D +SP D+T R +LV H
Sbjct: 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT-----------------LRRVLVGHR- 256
Query: 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML 892
+AVN + D + VSAS D T+KVW++ E F L H R + +
Sbjct: 257 ---AAVN--VVDFDDKYIVSASGDRTIKVWNTSTCE----FVRTLNGH---KRGIACLQY 304
Query: 893 RHSAQVVVGACDGIIHMFSVD 913
R VV G+ D I ++ ++
Sbjct: 305 RDRL-VVSGSSDNTIRLWDIE 324
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKD 870
VA + H S V+ + S D S F++ASDD T++VW+++K+ K+
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKD 870
VA + H S V+ + S D S F++ASDD T++VW+++K+ K+
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 822 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL 881
+ G+ L H V ++ +S D F +S S D +++WD L +S R R H
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD---LAAGVSTR-RFVGHT 472
Query: 882 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 941
+ L + Q+V + D I +++ LG KY+ I +
Sbjct: 473 K--DVLSVAFSLDNRQIVSASRDRTIKLWNT------LGEC-KYT----ISEGGEGHRDW 519
Query: 942 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWF 1001
V+ V + + N + ++ + + +W+ + TL GYVS++ P G+
Sbjct: 520 VSCVRF-SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLC 576
Query: 1002 VSGSSRGVLTLWDL 1015
SG GV+ LWDL
Sbjct: 577 ASGGKDGVVLLWDL 590
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL 887
VA + H S V+ + S D S F+++SDD T+++W+++K+ K+ +
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSA--------------- 925
Query: 888 CTMMLRHSAQVVVGACDGIIHMFSVDHISR 917
+ML+ VV + + + +VDHI R
Sbjct: 926 --VMLKQEVDVVFQ--ENEVMVLAVDHIRR 951
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY-HLEGSRALCTMML 892
H ++VN S D S S D T+K+WD+ + S + + +LE + +++
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 893 R------HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVN 946
+ A+++V A + I +F + H S LG + T + + +
Sbjct: 808 KCCSWSADGARIMVAAKNKIF-LFDI-HTSGLLGEIH------------TGHHSTIQYCD 853
Query: 947 YNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS 1006
++ N H+ + + + LW+T S S + +V ++ P G+ F++ S
Sbjct: 854 FSPQN---HLAVVALSQYCVELWNTDSRSKVADCRG--HLSWVHGVMFSPDGSSFLTSSD 908
Query: 1007 RGVLTLWDLR 1016
+ LW+ +
Sbjct: 909 DQTIRLWETK 918
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L H + H+ +SAS D+T+++WD E L Y L+G AL +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE--------LXYTLQGHTALVGL 357
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISR 917
+ +V A DG I + + SR
Sbjct: 358 LRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884
GI L+ H V+++ IS D F +S S D T+++WD L + R R H +
Sbjct: 53 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTGTTTR-RFVGHTK-- 106
Query: 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS-GISDIKKKDTKEGAIVT 943
L + Q+V G+ D I +++ + + E +S +S ++ I+
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 944 LVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVS 1003
++ + +++ NC + ++N I GY++++ P G+ S
Sbjct: 167 SCGWD-----KLVKVWNLANCKL-----KTNH-------IGHTGYLNTVTVSPDGSLCAS 209
Query: 1004 GSSRGVLTLWDL 1015
G G LWDL
Sbjct: 210 GGKDGQAMLWDL 221
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884
GI L+ H V+++ IS D F +S S D T+++WD L + R R H +
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTGTTTR-RFVGHTK-- 129
Query: 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS-GISDIKKKDTKEGAIVT 943
L + Q+V G+ D I +++ + + E +S +S ++ I+
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 944 LVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVS 1003
++ + +++ NC + ++N I GY++++ P G+ S
Sbjct: 190 SCGWD-----KLVKVWNLANCKL-----KTNH-------IGHTGYLNTVTVSPDGSLCAS 232
Query: 1004 GSSRGVLTLWDL 1015
G G LWDL
Sbjct: 233 GGKDGQAMLWDL 244
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L H + H+ +SAS D+T+++WD E L Y L+G AL +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------LMYTLQGHTALVGL 357
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISR 917
+ +V A DG I + + SR
Sbjct: 358 LRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 34/212 (16%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + V+++A+S++ +F VSAS D ++++W+ + + F L
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT------KDVLSVA 116
Query: 891 MLRHSAQVVVGACDGIIHMFSVDH-----ISRGLGNVEKYSGISDIKKKDTKEGAIVTLV 945
+ Q+V G D + +++V +SRG +S ++ + + ++ V
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG----AHTDWVSCVRFSPSLDAPVI--V 170
Query: 946 NYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGS 1005
+ DN + +WD + LK YV+S+ P G+ S
Sbjct: 171 SGGWDNL-------------VKVWDLATGRLVTDLKG--HTNYVTSVTVSPDGSLCASSD 215
Query: 1006 SRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037
GV LWDL ++ + + PI ++C
Sbjct: 216 KDGVARLWDLTKGEALS--EMAAGAPINQICF 245
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 821 WRPRGILVAHLQEHCSAV-NEIAISHDHSFFVSASDDSTVKVWDSRKLEKDIS 872
W+ G LV +LQ H ++V + +S + F++AS D T+K+W + K+ K S
Sbjct: 129 WK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFS 180
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 966 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025
I +WD + L+ ++ Y SL P G+ VSGS + +WDLR + Q
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKLVSGSGDRTVRIWDLR------TGQ 198
Query: 1026 YSQVCPIEK--MCLFVPPPNAAVSTTARPLIYVAAGC--NEVSLWNAENGSCHQVLRTAN 1081
S IE + V P + Y+AAG V +W++E G + L + N
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGK---------YIAAGSLDRAVRVWDSETGFLVERLDSEN 249
Query: 1082 YDG 1084
G
Sbjct: 250 ESG 252
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 39/150 (26%)
Query: 188 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 232
K G+ L+ LL +C + +PH YR AA++ S L + ++L
Sbjct: 346 KAAGVCLM--LLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GSILEGPEPNQL 402
Query: 233 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 285
+ + +P +I ++ DP+ +VR T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 286 MLPD----DPEESVRICYASNIAKLALTAY 311
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 112
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 950
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 165
Query: 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 166 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044
LWD+R + ++ + I +C F P NA
Sbjct: 220 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 251
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 950
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 950
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 188 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 232
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 233 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 285
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 286 MLPD----DPEESVRICYASNIAKLALTAY 311
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 25/195 (12%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H +V +I+ H S S D T+K+WD + F T H
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ------GFECIRTMHGHDHNVSSVS 199
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKK--KDTKEGAIVTLVNYN 948
++ + +V + D I M+ V G V+ ++G + + + ++G TL+
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEV---QTGYC-VKTFTGHREWVRMVRPNQDG---TLIASC 252
Query: 949 TDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS--------SLVTGPCGNW 1000
+++ +++ +T+ C L + R + PE Y S + +G G +
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVE--CISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 1001 FVSGSSRGVLTLWDL 1015
+SGS + +WD+
Sbjct: 311 LLSGSRDKTIKMWDV 325
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
W PR L H S V + S VSAS+D+T+KVWD
Sbjct: 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 530 RRQPASLASVKALLSCLKPPVSRE-VFYQVLENARSSDMLERQRKIWYNTSSQSK 583
+ +P L + + +LSCLKP ++ V+ VLEN + + + R W N + K
Sbjct: 28 KNEPEFLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGEHK 82
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 188 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 232
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 233 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 285
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 286 MLPD----DPEESVRICYASNIAKLALTAY 311
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 188 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 232
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 233 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 285
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 286 MLPD----DPEESVRICYASNIAKLALTAY 311
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
Query: 834 HCSAVNEIAI-SHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML 892
H + V ++I S + + F+S S D+TV++WD R I+ R+ TYH
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLR-----ITSRAVRTYHGHEGDINSVKFF 258
Query: 893 RHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNC 952
+ G+ DG +F + R ++ Y+ D ++ E IVT V ++
Sbjct: 259 PDGQRFGTGSDDGTCRLFDM----RTGHQLQVYNREPD---RNDNELPIVTSVAFSI--- 308
Query: 953 ASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI--PEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
+ + N ++WDT L + EG +S L G+ +GS L
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 1011 TLW 1013
+W
Sbjct: 369 KIW 371
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 14/188 (7%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD-SRKLEKDISF-RSRLTYHLEGSRALC 888
++ HC V E A + + DS +++ S + ++D + SR+ +G + C
Sbjct: 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 889 TMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYN 948
+ +++ G+ D ++ V R IS I + G +++ +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQR----------IS-IFGSEFPSGHTADVLSLS 212
Query: 949 TDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG 1008
++ ++MF+ + + + LWD R S EG ++S+ P G F +GS G
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRA-VRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 1009 VLTLWDLR 1016
L+D+R
Sbjct: 272 TCRLFDMR 279
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 188 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 232
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 221 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 277
Query: 233 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 285
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 278 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 329
Query: 286 MLPD----DPEESVRICYASNIAKLALTAY 311
L + +P + +C+A + LA AY
Sbjct: 330 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 357
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The
Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + + + D +SAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 950
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890
L+ H + + + D +SAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 950
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1010
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1011 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 81/195 (41%), Gaps = 28/195 (14%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 942
+ + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 943 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1000
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDK-------------XVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1001 FVSGSSRGVLTLWDL 1015
S G + LW+L
Sbjct: 211 IASAGKDGEIXLWNL 225
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 271 SDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFL 314
SD KI P+Y P+L++LP + S ++ Y + L YG L
Sbjct: 812 SDDKILPKYENPILAVLPKKSDLSPKVTYRQAGDRYILVEYGEL 855
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR 865
GI L H V+++A+S ++ F +S+S D T+++WD R
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863
G L+ L+ H + + S D V+ASDD +K++D
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 873
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 290
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 873
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 873
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 845 HDHSFFVSASDDSTVKVWDSRKLE 868
HD F S+S D T+KVWD+ L+
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQ 133
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 966 IHLWDTRSNSNTWTLKAIPEEGY---VSSLVTGPCGNWFVSGSSRGVLTLW 1013
I +W T +S W K++ EG+ V + PCGN+ S S +W
Sbjct: 40 IRIWGTEGDS--WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 942
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 943 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1000
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1001 FVSGSSRGVLTLWDL 1015
S G + LW+L
Sbjct: 211 IASAGKDGEIMLWNL 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,092,321
Number of Sequences: 62578
Number of extensions: 1335499
Number of successful extensions: 3505
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3092
Number of HSP's gapped (non-prelim): 352
length of query: 1249
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1139
effective length of database: 8,089,757
effective search space: 9214233223
effective search space used: 9214233223
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)