Query 000861
Match_columns 1249
No_of_seqs 899 out of 4315
Neff 8.1
Searched_HMMs 46136
Date Tue Apr 2 00:27:30 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1240 Protein kinase contain 100.0 1E-128 2E-133 1153.9 72.0 1042 132-1249 368-1431(1431)
2 KOG0271 Notchless-like WD40 re 100.0 6.2E-41 1.3E-45 359.7 26.1 329 777-1249 107-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.5E-37 3.1E-42 333.9 26.2 304 823-1249 103-437 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-37 1.7E-41 333.2 23.7 282 833-1249 173-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-36 3.9E-41 330.3 19.4 275 799-1155 180-458 (459)
6 KOG0286 G-protein beta subunit 100.0 1.3E-34 2.9E-39 302.5 32.5 294 828-1249 48-343 (343)
7 KOG0295 WD40 repeat-containing 100.0 2.6E-32 5.5E-37 293.0 25.3 308 817-1249 90-404 (406)
8 KOG0285 Pleiotropic regulator 100.0 6.3E-32 1.4E-36 288.3 25.9 304 818-1249 134-437 (460)
9 KOG0279 G protein beta subunit 100.0 1.3E-31 2.9E-36 278.9 27.4 273 811-1157 33-313 (315)
10 KOG0279 G protein beta subunit 100.0 1E-30 2.2E-35 272.4 32.3 303 826-1249 6-311 (315)
11 KOG0315 G-protein beta subunit 100.0 1.7E-30 3.7E-35 266.0 28.8 280 808-1169 12-300 (311)
12 KOG0315 G-protein beta subunit 100.0 1.9E-30 4.1E-35 265.7 28.5 275 848-1249 11-286 (311)
13 KOG0286 G-protein beta subunit 100.0 2.7E-30 5.9E-35 270.3 27.4 291 787-1155 50-343 (343)
14 KOG0319 WD40-repeat-containing 100.0 5.3E-31 1.2E-35 304.6 23.2 407 799-1249 67-575 (775)
15 KOG0319 WD40-repeat-containing 100.0 2E-30 4.3E-35 299.9 24.9 408 800-1249 111-617 (775)
16 cd00200 WD40 WD40 domain, foun 100.0 4.8E-29 1E-33 279.5 35.6 287 828-1249 2-289 (289)
17 KOG0265 U5 snRNP-specific prot 100.0 1.2E-29 2.5E-34 266.8 27.2 291 827-1247 39-334 (338)
18 KOG0284 Polyadenylation factor 100.0 1.3E-30 2.7E-35 283.4 19.2 281 834-1249 95-378 (464)
19 KOG0296 Angio-associated migra 100.0 6E-29 1.3E-33 267.5 31.6 334 827-1249 56-396 (399)
20 KOG0291 WD40-repeat-containing 100.0 5.8E-29 1.3E-33 287.3 32.9 363 798-1249 100-548 (893)
21 KOG0318 WD40 repeat stress pro 100.0 1.6E-28 3.5E-33 274.2 31.9 404 785-1249 140-558 (603)
22 KOG0318 WD40 repeat stress pro 100.0 3.1E-28 6.8E-33 271.9 33.7 326 799-1249 195-600 (603)
23 KOG0282 mRNA splicing factor [ 100.0 4.8E-30 1E-34 284.8 17.9 293 825-1249 204-503 (503)
24 KOG0266 WD40 repeat-containing 100.0 2.1E-28 4.5E-33 295.9 33.8 297 825-1249 148-452 (456)
25 KOG0273 Beta-transducin family 100.0 4.4E-28 9.5E-33 267.9 31.4 285 836-1249 236-521 (524)
26 KOG0273 Beta-transducin family 100.0 1.5E-28 3.3E-33 271.5 26.7 297 829-1249 173-480 (524)
27 KOG0211 Protein phosphatase 2A 100.0 3.1E-31 6.8E-36 323.4 6.0 384 107-559 246-636 (759)
28 KOG0284 Polyadenylation factor 100.0 7.5E-30 1.6E-34 277.4 15.0 280 799-1160 101-383 (464)
29 KOG0645 WD40 repeat protein [G 100.0 1.2E-27 2.7E-32 248.3 29.5 295 827-1249 6-309 (312)
30 KOG0293 WD40 repeat-containing 100.0 1.8E-28 3.9E-33 266.2 23.1 291 828-1249 217-511 (519)
31 PLN00181 protein SPA1-RELATED; 100.0 8.4E-27 1.8E-31 302.3 41.5 301 831-1249 479-791 (793)
32 KOG0281 Beta-TrCP (transducin 100.0 5.9E-29 1.3E-33 264.1 16.9 295 818-1249 177-475 (499)
33 KOG0263 Transcription initiati 100.0 1.8E-28 4E-33 287.4 21.3 220 818-1073 433-653 (707)
34 KOG0263 Transcription initiati 100.0 3.5E-28 7.5E-33 285.1 23.5 260 826-1162 369-654 (707)
35 KOG0306 WD40-repeat-containing 100.0 1.7E-27 3.6E-32 275.2 28.5 409 787-1249 102-662 (888)
36 KOG0295 WD40 repeat-containing 100.0 5.8E-28 1.3E-32 259.7 19.7 275 800-1156 114-405 (406)
37 KOG0285 Pleiotropic regulator 100.0 1.6E-27 3.4E-32 254.8 22.7 282 799-1157 156-439 (460)
38 KOG0291 WD40-repeat-containing 100.0 1.9E-26 4.2E-31 266.6 33.2 388 799-1249 150-610 (893)
39 KOG0275 Conserved WD40 repeat- 100.0 1.3E-27 2.9E-32 251.4 20.0 291 834-1249 212-507 (508)
40 KOG0316 Conserved WD40 repeat- 100.0 1E-26 2.2E-31 236.5 25.5 254 827-1165 9-265 (307)
41 KOG0645 WD40 repeat protein [G 100.0 1.5E-26 3.2E-31 240.4 26.8 279 802-1157 22-311 (312)
42 KOG0266 WD40 repeat-containing 100.0 1.3E-26 2.9E-31 280.2 27.8 280 799-1157 164-454 (456)
43 KOG0276 Vesicle coat complex C 99.9 1.7E-26 3.6E-31 261.9 26.1 254 829-1163 7-263 (794)
44 KOG0293 WD40 repeat-containing 99.9 1.3E-26 2.8E-31 251.9 23.0 277 799-1159 229-515 (519)
45 cd00200 WD40 WD40 domain, foun 99.9 1.5E-25 3.2E-30 251.2 32.1 274 799-1155 14-289 (289)
46 KOG0640 mRNA cleavage stimulat 99.9 4E-26 8.6E-31 239.8 23.4 304 828-1249 105-424 (430)
47 KOG0278 Serine/threonine kinas 99.9 8.3E-27 1.8E-31 238.8 17.3 277 801-1162 24-302 (334)
48 KOG0296 Angio-associated migra 99.9 1E-25 2.3E-30 242.6 26.5 276 799-1157 69-398 (399)
49 KOG0643 Translation initiation 99.9 7E-26 1.5E-30 234.5 22.6 303 788-1157 6-317 (327)
50 KOG0313 Microtubule binding pr 99.9 1.9E-25 4.2E-30 241.4 26.4 284 834-1249 104-416 (423)
51 KOG0292 Vesicle coat complex C 99.9 2.5E-25 5.5E-30 260.2 29.2 288 800-1168 15-332 (1202)
52 KOG0281 Beta-TrCP (transducin 99.9 8E-27 1.7E-31 248.0 14.3 274 806-1162 207-482 (499)
53 KOG0643 Translation initiation 99.9 1.6E-24 3.4E-29 224.6 29.4 297 830-1248 5-314 (327)
54 KOG0276 Vesicle coat complex C 99.9 5.2E-25 1.1E-29 249.9 27.4 245 799-1077 18-265 (794)
55 KOG0292 Vesicle coat complex C 99.9 2.9E-25 6.2E-30 259.8 25.8 257 830-1166 4-289 (1202)
56 KOG0278 Serine/threonine kinas 99.9 5.7E-26 1.2E-30 232.6 17.4 283 830-1249 9-295 (334)
57 KOG0313 Microtubule binding pr 99.9 4.1E-25 8.9E-30 238.9 24.6 286 806-1157 115-418 (423)
58 KOG0288 WD40 repeat protein Ti 99.9 5.7E-26 1.2E-30 247.8 17.4 290 829-1249 169-459 (459)
59 KOG0265 U5 snRNP-specific prot 99.9 5.1E-25 1.1E-29 232.0 22.2 273 799-1154 52-335 (338)
60 KOG0282 mRNA splicing factor [ 99.9 1.4E-25 3E-30 249.5 17.5 275 799-1155 219-503 (503)
61 KOG0316 Conserved WD40 repeat- 99.9 1.2E-24 2.6E-29 221.4 22.8 244 799-1079 22-267 (307)
62 KOG0306 WD40-repeat-containing 99.9 1.6E-24 3.5E-29 250.7 25.4 286 799-1158 378-665 (888)
63 KOG0268 Sof1-like rRNA process 99.9 3.2E-25 7E-30 238.1 16.4 283 827-1249 58-343 (433)
64 PLN00181 protein SPA1-RELATED; 99.9 1.5E-23 3.3E-28 271.9 35.7 286 799-1156 488-792 (793)
65 KOG0772 Uncharacterized conser 99.9 2.3E-24 4.9E-29 240.2 23.4 307 824-1248 156-484 (641)
66 KOG1407 WD40 repeat protein [F 99.9 1.7E-23 3.6E-28 216.5 26.4 284 829-1248 14-308 (313)
67 KOG0275 Conserved WD40 repeat- 99.9 6.8E-25 1.5E-29 231.1 15.9 276 799-1155 218-507 (508)
68 KOG0305 Anaphase promoting com 99.9 3.1E-23 6.6E-28 241.0 28.0 274 838-1249 180-459 (484)
69 KOG0274 Cdc4 and related F-box 99.9 2.7E-23 5.9E-28 250.7 28.7 289 818-1249 189-480 (537)
70 KOG0274 Cdc4 and related F-box 99.9 2.6E-23 5.6E-28 250.9 28.3 268 808-1165 220-490 (537)
71 KOG0283 WD40 repeat-containing 99.9 8.1E-24 1.8E-28 250.8 23.3 258 827-1159 258-578 (712)
72 KOG0277 Peroxisomal targeting 99.9 2.1E-23 4.5E-28 214.9 22.8 282 839-1249 12-307 (311)
73 KOG0973 Histone transcription 99.9 2.7E-23 5.8E-28 251.9 27.6 320 833-1248 10-352 (942)
74 KOG1446 Histone H3 (Lys4) meth 99.9 4.3E-22 9.3E-27 212.6 33.3 261 827-1168 6-273 (311)
75 KOG0300 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 221.3 20.6 305 826-1249 139-474 (481)
76 KOG0310 Conserved WD40 repeat- 99.9 4.8E-23 1E-27 230.0 24.9 275 835-1247 26-305 (487)
77 KOG0640 mRNA cleavage stimulat 99.9 2.3E-23 5.1E-28 219.1 18.2 285 799-1157 117-426 (430)
78 KOG0299 U3 snoRNP-associated p 99.9 2.2E-22 4.8E-27 223.0 26.7 267 828-1161 135-414 (479)
79 KOG0300 WD40 repeat-containing 99.9 5.7E-23 1.2E-27 216.3 20.8 298 779-1160 142-479 (481)
80 KOG0641 WD40 repeat protein [G 99.9 2.8E-21 6E-26 195.1 32.0 306 825-1248 23-346 (350)
81 PTZ00421 coronin; Provisional 99.9 5.5E-22 1.2E-26 239.3 32.4 265 834-1165 19-298 (493)
82 KOG0305 Anaphase promoting com 99.9 2E-22 4.3E-27 234.3 26.9 261 816-1161 197-465 (484)
83 KOG0288 WD40 repeat protein Ti 99.9 2.3E-23 5E-28 227.5 17.4 272 800-1155 181-459 (459)
84 KOG0289 mRNA splicing factor [ 99.9 4.3E-22 9.4E-27 218.5 26.9 283 836-1248 220-503 (506)
85 KOG0641 WD40 repeat protein [G 99.9 9.7E-22 2.1E-26 198.4 27.3 286 799-1157 37-349 (350)
86 PTZ00421 coronin; Provisional 99.9 1.2E-21 2.5E-26 236.5 32.6 220 830-1078 70-299 (493)
87 KOG0277 Peroxisomal targeting 99.9 1E-22 2.3E-27 209.8 19.6 243 834-1156 59-308 (311)
88 KOG0289 mRNA splicing factor [ 99.9 3.7E-22 8E-27 219.0 24.8 266 809-1156 234-505 (506)
89 KOG0301 Phospholipase A2-activ 99.9 9.2E-22 2E-26 227.0 27.4 278 826-1248 5-285 (745)
90 KOG0283 WD40 repeat-containing 99.9 3.7E-22 8E-27 236.9 24.6 260 881-1249 265-574 (712)
91 KOG0308 Conserved WD40 repeat- 99.9 1.8E-22 4E-27 231.0 20.4 263 833-1168 19-296 (735)
92 KOG0268 Sof1-like rRNA process 99.9 6.4E-23 1.4E-27 220.5 15.5 269 809-1165 82-353 (433)
93 KOG1539 WD repeat protein [Gen 99.9 3.7E-21 7.9E-26 225.9 31.3 364 799-1248 207-645 (910)
94 PTZ00420 coronin; Provisional 99.9 9.3E-21 2E-25 229.4 35.3 236 853-1160 50-296 (568)
95 KOG0308 Conserved WD40 repeat- 99.9 2.4E-22 5.1E-27 230.1 20.1 244 804-1071 35-287 (735)
96 PTZ00420 coronin; Provisional 99.9 5.1E-21 1.1E-25 231.7 31.6 248 816-1095 54-316 (568)
97 KOG1408 WD40 repeat protein [F 99.9 1E-21 2.2E-26 225.1 23.6 311 815-1249 345-711 (1080)
98 KOG0294 WD40 repeat-containing 99.9 3.7E-21 8.1E-26 204.1 25.1 270 849-1249 3-279 (362)
99 KOG2096 WD40 repeat protein [G 99.9 3.7E-21 8E-26 203.6 24.9 307 828-1247 79-398 (420)
100 KOG0647 mRNA export protein (c 99.9 7.5E-21 1.6E-25 200.8 26.6 254 835-1161 27-285 (347)
101 KOG1240 Protein kinase contain 99.9 8.3E-19 1.8E-23 213.0 45.9 274 191-535 459-767 (1431)
102 KOG0294 WD40 repeat-containing 99.9 7.3E-21 1.6E-25 201.9 24.8 246 825-1159 33-283 (362)
103 KOG0973 Histone transcription 99.9 3.2E-21 7E-26 234.0 24.7 299 798-1161 17-359 (942)
104 KOG0301 Phospholipase A2-activ 99.9 3.8E-21 8.3E-26 221.9 21.9 256 809-1157 28-288 (745)
105 KOG0264 Nucleosome remodeling 99.9 8.7E-21 1.9E-25 211.0 23.7 276 830-1157 119-404 (422)
106 KOG0310 Conserved WD40 repeat- 99.9 5.2E-21 1.1E-25 213.8 22.0 277 799-1159 31-311 (487)
107 KOG0639 Transducin-like enhanc 99.9 4.5E-21 9.7E-26 212.8 20.6 284 833-1248 417-701 (705)
108 KOG1539 WD repeat protein [Gen 99.9 4.1E-20 8.8E-25 217.2 29.3 342 813-1249 179-604 (910)
109 KOG0772 Uncharacterized conser 99.9 4.3E-21 9.4E-26 214.2 19.8 300 784-1155 159-485 (641)
110 KOG1407 WD40 repeat protein [F 99.9 1.4E-20 3E-25 195.0 22.1 242 878-1247 15-257 (313)
111 KOG1036 Mitotic spindle checkp 99.9 9E-20 1.9E-24 193.8 27.9 253 835-1166 13-271 (323)
112 KOG0646 WD40 repeat protein [G 99.9 2E-20 4.4E-25 208.0 23.8 278 852-1249 12-305 (476)
113 KOG0299 U3 snoRNP-associated p 99.9 5.6E-20 1.2E-24 204.0 24.7 264 878-1249 137-408 (479)
114 KOG0269 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 219.3 20.7 290 829-1246 36-335 (839)
115 KOG1446 Histone H3 (Lys4) meth 99.8 4.8E-19 1E-23 189.4 28.4 247 798-1079 18-272 (311)
116 KOG2055 WD40 repeat protein [G 99.8 1.4E-19 2.9E-24 200.7 24.6 292 836-1249 214-510 (514)
117 KOG2048 WD40 repeat protein [G 99.8 1.4E-18 3E-23 201.0 30.9 282 835-1247 25-315 (691)
118 KOG0264 Nucleosome remodeling 99.8 1.2E-19 2.6E-24 202.0 21.4 268 881-1249 122-402 (422)
119 KOG0647 mRNA export protein (c 99.8 2.5E-19 5.4E-24 189.4 22.4 240 799-1075 32-287 (347)
120 KOG1274 WD40 repeat protein [G 99.8 1.3E-18 2.7E-23 207.2 30.5 244 833-1158 11-263 (933)
121 KOG4283 Transcription-coupled 99.8 2.1E-19 4.5E-24 188.6 21.1 313 880-1248 40-362 (397)
122 KOG2048 WD40 repeat protein [G 99.8 6.5E-18 1.4E-22 195.4 34.9 239 801-1073 32-279 (691)
123 KOG1332 Vesicle coat complex C 99.8 3E-19 6.4E-24 183.6 20.2 262 831-1158 7-287 (299)
124 KOG2445 Nuclear pore complex c 99.8 3.3E-18 7.1E-23 181.3 27.8 289 832-1164 10-325 (361)
125 KOG2106 Uncharacterized conser 99.8 3.5E-18 7.5E-23 190.8 29.4 339 816-1249 134-519 (626)
126 KOG0267 Microtubule severing p 99.8 1.5E-20 3.3E-25 217.6 11.1 216 818-1074 16-231 (825)
127 KOG2106 Uncharacterized conser 99.8 9.5E-18 2.1E-22 187.4 32.2 367 800-1249 206-624 (626)
128 KOG4328 WD40 protein [Function 99.8 1.1E-18 2.5E-23 193.4 24.3 300 828-1248 179-492 (498)
129 KOG1332 Vesicle coat complex C 99.8 3E-19 6.6E-24 183.5 18.3 243 802-1069 19-286 (299)
130 KOG1036 Mitotic spindle checkp 99.8 8.9E-19 1.9E-23 186.3 22.2 240 799-1078 18-271 (323)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.3E-17 2.9E-22 190.7 33.7 270 847-1249 1-277 (300)
132 KOG4283 Transcription-coupled 99.8 3.9E-19 8.4E-24 186.6 18.4 216 832-1074 40-281 (397)
133 KOG2445 Nuclear pore complex c 99.8 7.7E-18 1.7E-22 178.5 26.6 275 880-1249 10-316 (361)
134 KOG1063 RNA polymerase II elon 99.8 1.2E-18 2.5E-23 201.5 21.9 388 825-1249 181-646 (764)
135 KOG0269 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 210.2 15.1 207 837-1072 89-299 (839)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.7E-17 5.8E-22 188.2 32.4 266 814-1166 9-288 (300)
137 KOG0267 Microtubule severing p 99.8 6.8E-20 1.5E-24 212.2 10.3 228 845-1161 2-230 (825)
138 KOG0321 WD40 repeat-containing 99.8 2.7E-18 5.9E-23 196.8 23.0 285 847-1249 64-389 (720)
139 KOG0650 WD40 repeat nucleolar 99.8 1.2E-17 2.7E-22 189.8 26.9 307 826-1248 391-732 (733)
140 KOG1273 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 179.1 22.5 290 838-1249 26-320 (405)
141 KOG0302 Ribosome Assembly prot 99.8 4.6E-18 1E-22 184.3 21.5 218 830-1070 146-379 (440)
142 KOG1063 RNA polymerase II elon 99.8 1.3E-17 2.8E-22 192.9 25.9 313 816-1248 34-388 (764)
143 KOG1408 WD40 repeat protein [F 99.8 4.2E-18 9.1E-23 195.8 19.5 247 835-1158 459-714 (1080)
144 KOG0646 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 188.3 19.8 220 834-1079 80-317 (476)
145 KOG2055 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 185.6 21.0 283 797-1157 216-512 (514)
146 KOG0321 WD40 repeat-containing 99.8 1.3E-17 2.9E-22 191.2 21.9 268 828-1159 93-393 (720)
147 KOG1517 Guanine nucleotide bin 99.8 8.3E-15 1.8E-19 175.9 45.7 305 836-1249 1065-1379(1387)
148 KOG0639 Transducin-like enhanc 99.8 3.6E-18 7.8E-23 190.0 15.9 256 817-1156 441-703 (705)
149 KOG1274 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 193.3 26.7 249 881-1249 11-260 (933)
150 KOG0307 Vesicle coat complex C 99.8 4.6E-18 1E-22 207.4 15.3 290 840-1248 11-324 (1049)
151 KOG4227 WD40 repeat protein [G 99.8 7.5E-17 1.6E-21 174.5 21.6 327 827-1249 48-385 (609)
152 KOG4378 Nuclear protein COP1 [ 99.7 1.6E-16 3.6E-21 176.8 22.5 266 816-1161 12-284 (673)
153 KOG2919 Guanine nucleotide-bin 99.7 3.2E-16 7E-21 167.0 23.5 252 839-1159 53-329 (406)
154 KOG2096 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 167.7 22.1 293 783-1156 77-401 (420)
155 KOG0307 Vesicle coat complex C 99.7 1.6E-17 3.5E-22 202.7 15.3 254 836-1160 65-330 (1049)
156 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-17 7.5E-22 186.2 16.8 276 819-1163 282-567 (577)
157 KOG0270 WD40 repeat-containing 99.7 1.2E-16 2.6E-21 177.2 20.6 241 847-1161 192-453 (463)
158 KOG1188 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 170.4 20.3 198 848-1078 41-251 (376)
159 KOG1273 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 165.0 21.5 290 798-1165 27-330 (405)
160 KOG0270 WD40 repeat-containing 99.7 1.9E-16 4.1E-21 175.6 18.7 235 806-1073 192-453 (463)
161 KOG0211 Protein phosphatase 2A 99.7 1.4E-17 3E-22 204.5 8.0 399 115-564 137-556 (759)
162 KOG4378 Nuclear protein COP1 [ 99.7 6.5E-16 1.4E-20 172.2 19.5 264 856-1249 11-278 (673)
163 KOG1538 Uncharacterized conser 99.7 5.2E-16 1.1E-20 177.4 18.9 269 799-1157 17-293 (1081)
164 KOG0322 G-protein beta subunit 99.7 1.7E-16 3.8E-21 165.0 13.7 291 827-1249 6-321 (323)
165 KOG1034 Transcriptional repres 99.7 2.8E-15 6E-20 160.5 22.8 311 826-1249 28-381 (385)
166 KOG1445 Tumor-specific antigen 99.7 2.6E-15 5.6E-20 171.0 23.6 215 826-1069 70-293 (1012)
167 KOG0302 Ribosome Assembly prot 99.7 1.1E-15 2.3E-20 166.1 19.6 218 881-1158 149-379 (440)
168 KOG4328 WD40 protein [Function 99.7 1.8E-15 3.9E-20 168.2 21.8 216 877-1157 180-399 (498)
169 KOG1007 WD repeat protein TSSC 99.7 5.5E-15 1.2E-19 155.5 23.8 308 846-1247 25-357 (370)
170 KOG1963 WD40 repeat protein [G 99.7 1.3E-14 2.8E-19 173.5 28.7 376 799-1249 21-536 (792)
171 KOG1538 Uncharacterized conser 99.7 3.9E-15 8.5E-20 170.3 22.1 275 837-1249 14-291 (1081)
172 KOG0650 WD40 repeat nucleolar 99.7 5E-15 1.1E-19 168.8 22.7 296 777-1154 392-732 (733)
173 KOG0303 Actin-binding protein 99.7 4.9E-15 1.1E-19 161.8 21.5 214 878-1160 76-297 (472)
174 KOG1007 WD repeat protein TSSC 99.7 6.2E-15 1.3E-19 155.1 20.8 288 830-1157 58-361 (370)
175 KOG1310 WD40 repeat protein [G 99.7 1.7E-14 3.6E-19 162.7 24.7 230 826-1076 41-310 (758)
176 KOG1009 Chromatin assembly com 99.6 1.3E-14 2.8E-19 159.6 22.7 176 835-1017 13-196 (434)
177 COG2319 FOG: WD40 repeat [Gene 99.6 2.6E-13 5.7E-18 160.2 36.0 356 800-1249 71-440 (466)
178 KOG0642 Cell-cycle nuclear pro 99.6 3.3E-15 7.2E-20 170.2 16.7 264 875-1249 286-559 (577)
179 COG2319 FOG: WD40 repeat [Gene 99.6 5.8E-13 1.2E-17 157.3 36.5 253 829-1163 59-320 (466)
180 KOG0649 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 142.1 22.8 251 836-1157 11-274 (325)
181 KOG1034 Transcriptional repres 99.6 2.4E-15 5.2E-20 161.0 10.3 234 816-1069 115-383 (385)
182 KOG0649 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 141.5 22.5 224 885-1168 12-246 (325)
183 KOG0303 Actin-binding protein 99.6 4.6E-14 9.9E-19 154.3 19.0 213 830-1072 76-297 (472)
184 KOG1334 WD40 repeat protein [G 99.6 1.3E-14 2.9E-19 162.3 15.1 309 826-1248 133-463 (559)
185 KOG2919 Guanine nucleotide-bin 99.6 1.7E-13 3.7E-18 146.4 22.4 246 800-1072 55-331 (406)
186 KOG0644 Uncharacterized conser 99.6 3.8E-15 8.1E-20 174.9 10.4 248 827-1165 182-434 (1113)
187 KOG1188 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 151.7 18.5 192 815-1025 49-251 (376)
188 KOG1587 Cytoplasmic dynein int 99.6 3.7E-13 8E-18 161.8 26.4 281 818-1158 224-517 (555)
189 PRK11028 6-phosphogluconolacto 99.6 3.3E-12 7.1E-17 149.3 33.9 241 849-1159 4-260 (330)
190 KOG1009 Chromatin assembly com 99.6 2.1E-13 4.4E-18 150.2 20.8 290 808-1162 28-377 (434)
191 KOG1587 Cytoplasmic dynein int 99.5 6.5E-13 1.4E-17 159.7 25.7 272 856-1249 221-514 (555)
192 KOG1445 Tumor-specific antigen 99.5 2.5E-13 5.5E-18 155.0 18.3 204 843-1071 587-800 (1012)
193 KOG1517 Guanine nucleotide bin 99.5 7.7E-13 1.7E-17 159.4 22.6 291 800-1160 1070-1384(1387)
194 KOG2110 Uncharacterized conser 99.5 1.5E-11 3.3E-16 134.4 29.4 239 834-1160 4-251 (391)
195 KOG0290 Conserved WD40 repeat- 99.5 6.2E-13 1.3E-17 140.4 16.5 215 832-1071 93-320 (364)
196 KOG1523 Actin-related protein 99.5 1.2E-11 2.7E-16 132.7 25.7 216 829-1072 4-239 (361)
197 KOG0771 Prolactin regulatory e 99.5 5E-13 1.1E-17 148.6 15.0 201 839-1069 148-354 (398)
198 PRK11028 6-phosphogluconolacto 99.5 5.5E-11 1.2E-15 139.0 32.2 270 815-1158 11-305 (330)
199 PRK01742 tolB translocation pr 99.4 6.3E-12 1.4E-16 152.0 23.8 234 817-1095 185-425 (429)
200 KOG1963 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 148.7 24.4 302 798-1159 209-540 (792)
201 KOG0644 Uncharacterized conser 99.4 2.1E-13 4.5E-18 160.5 8.9 238 799-1078 195-435 (1113)
202 KOG0771 Prolactin regulatory e 99.4 1.8E-11 3.9E-16 136.4 22.9 200 942-1247 148-350 (398)
203 KOG0322 G-protein beta subunit 99.4 2.7E-12 5.8E-17 134.2 15.2 274 810-1156 29-322 (323)
204 KOG4227 WD40 repeat protein [G 99.4 2.5E-11 5.5E-16 132.1 20.2 304 799-1157 61-387 (609)
205 KOG2110 Uncharacterized conser 99.4 2.3E-10 4.9E-15 125.4 26.3 232 885-1249 7-246 (391)
206 KOG1523 Actin-related protein 99.3 5.5E-11 1.2E-15 127.8 19.2 220 802-1042 18-261 (361)
207 KOG1524 WD40 repeat-containing 99.3 3.7E-11 8E-16 135.9 18.6 203 833-1069 12-216 (737)
208 KOG1524 WD40 repeat-containing 99.3 1.1E-11 2.3E-16 140.1 14.1 195 819-1065 88-282 (737)
209 KOG2321 WD40 repeat protein [G 99.3 1E-10 2.3E-15 133.6 21.9 252 833-1158 49-344 (703)
210 KOG0290 Conserved WD40 repeat- 99.3 3.4E-10 7.5E-15 120.0 23.8 253 885-1160 46-321 (364)
211 KOG2139 WD40 repeat protein [G 99.3 2.9E-10 6.3E-15 123.8 23.2 202 837-1063 100-305 (445)
212 KOG3881 Uncharacterized conser 99.3 1.1E-10 2.5E-15 128.5 19.9 254 835-1161 55-324 (412)
213 PRK01742 tolB translocation pr 99.3 1.8E-10 3.9E-15 139.3 22.0 218 856-1165 183-411 (429)
214 KOG1409 Uncharacterized conser 99.3 2E-10 4.2E-15 124.5 18.8 218 826-1071 15-272 (404)
215 KOG4190 Uncharacterized conser 99.3 1.3E-11 2.7E-16 139.1 9.8 225 825-1076 725-955 (1034)
216 KOG2111 Uncharacterized conser 99.3 6.4E-09 1.4E-13 112.2 29.8 242 837-1161 7-260 (346)
217 PRK13800 putative oxidoreducta 99.3 3.6E-11 7.9E-16 157.2 14.9 120 363-507 777-896 (897)
218 PRK02889 tolB translocation pr 99.2 1.3E-09 2.8E-14 131.7 26.5 233 819-1095 179-424 (427)
219 KOG1272 WD40-repeat-containing 99.2 4.3E-11 9.3E-16 133.9 11.9 200 839-1078 133-332 (545)
220 KOG1272 WD40-repeat-containing 99.2 2.9E-11 6.2E-16 135.2 9.9 225 800-1067 135-360 (545)
221 PRK03629 tolB translocation pr 99.2 2E-09 4.4E-14 130.0 26.7 232 818-1095 181-427 (429)
222 PRK04922 tolB translocation pr 99.2 1.7E-09 3.7E-14 131.1 25.6 219 818-1078 186-419 (433)
223 KOG1334 WD40 repeat protein [G 99.2 1.6E-10 3.5E-15 130.1 14.3 291 799-1161 147-470 (559)
224 PRK05137 tolB translocation pr 99.2 2.8E-09 6.1E-14 129.3 26.4 215 818-1073 184-416 (435)
225 KOG2394 WD40 protein DMR-N9 [G 99.2 2E-09 4.4E-14 122.6 22.5 227 838-1095 126-384 (636)
226 KOG4497 Uncharacterized conser 99.2 2.7E-09 5.8E-14 114.9 21.9 285 840-1165 13-358 (447)
227 KOG1064 RAVE (regulator of V-A 99.1 4.5E-10 9.7E-15 142.1 15.2 213 818-1078 2192-2407(2439)
228 KOG1310 WD40 repeat protein [G 99.1 1.5E-09 3.3E-14 123.4 17.8 170 876-1069 43-231 (758)
229 KOG4497 Uncharacterized conser 99.1 4.2E-09 9.1E-14 113.4 20.2 167 816-1015 71-239 (447)
230 PF02239 Cytochrom_D1: Cytochr 99.1 1.5E-08 3.4E-13 119.0 26.7 197 849-1079 8-212 (369)
231 KOG2394 WD40 protein DMR-N9 [G 99.1 1.8E-09 3.9E-14 123.0 17.9 187 844-1040 182-384 (636)
232 PRK13800 putative oxidoreducta 99.1 1.8E-09 3.9E-14 141.4 20.7 238 235-545 622-862 (897)
233 PRK03629 tolB translocation pr 99.1 2.7E-08 5.8E-13 120.3 28.1 177 857-1073 179-367 (429)
234 KOG0974 WD-repeat protein WDR6 99.1 3.5E-09 7.6E-14 129.6 20.0 275 834-1249 6-286 (967)
235 PRK09687 putative lyase; Provi 99.1 3.1E-09 6.8E-14 119.8 17.2 259 151-530 3-262 (280)
236 KOG2139 WD40 repeat protein [G 99.1 2E-08 4.2E-13 109.8 22.4 155 885-1069 100-268 (445)
237 PF02239 Cytochrom_D1: Cytochr 99.1 6.6E-08 1.4E-12 113.7 28.8 280 816-1167 16-357 (369)
238 KOG3881 Uncharacterized conser 99.1 6.7E-09 1.5E-13 114.8 18.7 220 830-1074 100-325 (412)
239 KOG2111 Uncharacterized conser 99.1 3.4E-08 7.4E-13 106.7 23.4 232 886-1248 8-253 (346)
240 PRK09687 putative lyase; Provi 99.0 6.4E-09 1.4E-13 117.3 18.9 253 138-507 25-279 (280)
241 PF08662 eIF2A: Eukaryotic tra 99.0 9.6E-09 2.1E-13 109.9 18.8 116 883-1023 59-185 (194)
242 PF08662 eIF2A: Eukaryotic tra 99.0 3E-08 6.5E-13 106.1 20.0 156 887-1077 9-186 (194)
243 KOG1354 Serine/threonine prote 99.0 3.8E-08 8.3E-13 106.9 19.5 278 834-1161 24-363 (433)
244 KOG0280 Uncharacterized conser 98.9 3.6E-08 7.8E-13 105.3 18.5 198 849-1072 87-287 (339)
245 PRK00178 tolB translocation pr 98.9 1.8E-07 3.9E-12 113.6 27.4 217 820-1078 183-414 (430)
246 KOG0974 WD-repeat protein WDR6 98.9 2.3E-08 4.9E-13 122.7 18.9 198 884-1158 88-289 (967)
247 TIGR02800 propeller_TolB tol-p 98.9 1.3E-07 2.9E-12 114.3 25.5 216 820-1077 174-404 (417)
248 PRK05137 tolB translocation pr 98.9 2.3E-07 4.9E-12 112.8 27.5 175 857-1071 182-368 (435)
249 PRK04922 tolB translocation pr 98.9 1.3E-07 2.8E-12 114.8 24.1 178 857-1074 184-373 (433)
250 KOG1354 Serine/threonine prote 98.9 4.4E-08 9.6E-13 106.4 17.3 249 799-1073 30-363 (433)
251 PF10282 Lactonase: Lactonase, 98.9 3.4E-06 7.3E-11 99.2 34.5 243 850-1157 2-275 (345)
252 KOG4190 Uncharacterized conser 98.9 6.6E-09 1.4E-13 117.6 10.6 181 876-1078 728-915 (1034)
253 PRK04792 tolB translocation pr 98.9 3.6E-07 7.9E-12 111.0 26.2 216 821-1078 203-433 (448)
254 PRK02889 tolB translocation pr 98.8 4.1E-07 8.9E-12 110.1 25.5 178 857-1074 176-365 (427)
255 KOG4547 WD40 repeat-containing 98.8 1.4E-07 3.1E-12 109.8 18.6 165 893-1082 3-185 (541)
256 KOG2171 Karyopherin (importin) 98.8 2E-07 4.2E-12 116.6 20.5 401 112-560 51-497 (1075)
257 KOG2315 Predicted translation 98.8 6.5E-07 1.4E-11 103.6 22.7 253 818-1157 107-390 (566)
258 KOG2315 Predicted translation 98.8 1.1E-06 2.3E-11 101.9 24.0 276 835-1164 34-351 (566)
259 KOG1064 RAVE (regulator of V-A 98.7 2.4E-08 5.1E-13 127.0 10.3 189 803-1028 2217-2410(2439)
260 KOG0309 Conserved WD40 repeat- 98.7 6.4E-08 1.4E-12 113.7 13.1 210 835-1072 24-235 (1081)
261 PRK01029 tolB translocation pr 98.7 2.1E-06 4.6E-11 103.6 26.3 221 823-1078 172-412 (428)
262 KOG0280 Uncharacterized conser 98.7 9.9E-07 2.2E-11 94.6 19.6 192 856-1070 45-242 (339)
263 KOG4547 WD40 repeat-containing 98.7 3E-07 6.6E-12 107.1 17.1 196 845-1070 3-221 (541)
264 TIGR02800 propeller_TolB tol-p 98.7 2E-06 4.3E-11 104.1 25.3 176 857-1072 170-357 (417)
265 KOG2321 WD40 repeat protein [G 98.7 1.7E-07 3.7E-12 107.9 14.8 185 823-1025 163-352 (703)
266 KOG1912 WD40 repeat protein [G 98.7 5.9E-06 1.3E-10 98.3 27.5 237 799-1069 20-304 (1062)
267 TIGR03300 assembly_YfgL outer 98.7 6.2E-06 1.3E-10 98.4 28.9 232 846-1166 104-347 (377)
268 COG5354 Uncharacterized protei 98.7 6.8E-06 1.5E-10 94.2 26.4 237 799-1071 37-308 (561)
269 PF01602 Adaptin_N: Adaptin N 98.7 3.1E-07 6.8E-12 114.6 17.6 263 191-515 76-338 (526)
270 KOG1409 Uncharacterized conser 98.7 6.8E-07 1.5E-11 97.6 17.4 200 810-1017 40-271 (404)
271 KOG2171 Karyopherin (importin) 98.7 2.5E-06 5.4E-11 107.0 24.4 314 189-515 74-423 (1075)
272 KOG2314 Translation initiation 98.7 4.6E-06 1E-10 96.0 24.0 234 799-1070 215-479 (698)
273 COG2706 3-carboxymuconate cycl 98.6 4.8E-05 1E-09 84.7 31.0 190 856-1071 15-223 (346)
274 TIGR02658 TTQ_MADH_Hv methylam 98.6 4.1E-05 9E-10 88.4 31.2 265 820-1165 31-338 (352)
275 PF10282 Lactonase: Lactonase, 98.6 3.9E-05 8.3E-10 90.3 31.2 255 836-1157 37-322 (345)
276 KOG2041 WD40 repeat protein [G 98.6 1.9E-06 4.1E-11 101.1 18.3 169 884-1069 15-186 (1189)
277 PRK01029 tolB translocation pr 98.6 3.4E-06 7.3E-11 101.8 21.6 220 800-1042 190-426 (428)
278 KOG3914 WD repeat protein WDR4 98.6 6.2E-07 1.4E-11 100.2 13.7 165 886-1078 65-232 (390)
279 PRK04792 tolB translocation pr 98.6 1.1E-05 2.5E-10 98.0 26.1 176 858-1073 199-386 (448)
280 PLN02919 haloacid dehalogenase 98.5 3.9E-05 8.4E-10 101.9 32.1 269 839-1161 571-892 (1057)
281 PLN02919 haloacid dehalogenase 98.5 1.1E-05 2.4E-10 107.0 27.0 238 816-1073 590-892 (1057)
282 PRK00178 tolB translocation pr 98.5 1.9E-05 4.2E-10 95.9 27.0 176 858-1073 180-367 (430)
283 TIGR03300 assembly_YfgL outer 98.5 3.7E-05 7.9E-10 91.8 28.2 193 847-1075 65-265 (377)
284 KOG1242 Protein containing ada 98.5 2.8E-07 6.1E-12 109.0 9.5 297 136-507 212-520 (569)
285 KOG1242 Protein containing ada 98.5 1.7E-06 3.7E-11 102.5 16.0 355 109-536 107-469 (569)
286 KOG4714 Nucleoporin [Nuclear s 98.5 2.6E-06 5.6E-11 90.0 15.4 204 838-1070 39-255 (319)
287 PTZ00429 beta-adaptin; Provisi 98.5 6.2E-06 1.3E-10 104.0 21.4 283 198-516 72-368 (746)
288 PF01602 Adaptin_N: Adaptin N 98.5 4.6E-07 1E-11 113.1 11.4 310 137-532 76-389 (526)
289 PF04762 IKI3: IKI3 family; I 98.5 0.00018 4E-09 93.9 34.2 212 834-1072 74-336 (928)
290 KOG2041 WD40 repeat protein [G 98.4 5E-06 1.1E-10 97.7 17.0 216 835-1071 14-249 (1189)
291 KOG0213 Splicing factor 3b, su 98.4 4.4E-06 9.4E-11 98.9 16.3 325 135-535 758-1093(1172)
292 PF00400 WD40: WD domain, G-be 98.4 4.9E-07 1.1E-11 69.5 5.7 39 825-863 1-39 (39)
293 PF04762 IKI3: IKI3 family; I 98.4 5.8E-05 1.3E-09 98.4 27.5 279 834-1159 119-458 (928)
294 KOG2023 Nuclear transport rece 98.4 3.3E-06 7.1E-11 99.3 13.5 302 189-529 169-519 (885)
295 KOG4532 WD40-like repeat conta 98.4 3.9E-05 8.5E-10 81.5 20.1 201 847-1079 84-292 (344)
296 KOG0309 Conserved WD40 repeat- 98.4 1.7E-06 3.6E-11 102.1 11.1 203 837-1069 69-277 (1081)
297 COG5181 HSH155 U2 snRNP splice 98.4 2.3E-05 4.9E-10 91.4 20.0 310 194-560 604-925 (975)
298 KOG1912 WD40 repeat protein [G 98.4 2.6E-05 5.6E-10 93.0 20.5 241 837-1158 17-305 (1062)
299 KOG3914 WD repeat protein WDR4 98.3 4.9E-06 1.1E-10 93.2 13.3 164 839-1025 66-232 (390)
300 KOG4714 Nucleoporin [Nuclear s 98.3 7.6E-06 1.7E-10 86.5 13.7 147 954-1158 101-255 (319)
301 KOG0882 Cyclophilin-related pe 98.3 9E-06 2E-10 91.7 14.9 291 834-1166 8-314 (558)
302 COG2706 3-carboxymuconate cycl 98.3 0.00073 1.6E-08 75.6 29.4 217 831-1070 35-275 (346)
303 COG4946 Uncharacterized protei 98.3 0.0004 8.6E-09 79.1 27.6 166 846-1043 331-501 (668)
304 KOG2023 Nuclear transport rece 98.3 5.7E-06 1.2E-10 97.4 12.8 285 195-533 129-486 (885)
305 PRK04043 tolB translocation pr 98.3 0.0004 8.8E-09 83.5 28.9 216 818-1078 169-408 (419)
306 PF15492 Nbas_N: Neuroblastoma 98.3 0.00031 6.7E-09 76.3 24.7 154 841-1007 3-168 (282)
307 COG5354 Uncharacterized protei 98.3 0.00015 3.2E-09 83.6 23.3 195 819-1043 15-235 (561)
308 PF13360 PQQ_2: PQQ-like domai 98.3 0.00015 3.3E-09 80.2 23.3 221 855-1162 1-235 (238)
309 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0017 3.6E-08 75.4 31.7 101 857-982 27-146 (352)
310 KOG1241 Karyopherin (importin) 98.2 7.1E-05 1.5E-09 90.0 20.7 308 195-532 130-461 (859)
311 KOG2695 WD40 repeat protein [G 98.2 7.2E-06 1.6E-10 89.7 10.5 167 851-1037 228-400 (425)
312 COG4946 Uncharacterized protei 98.2 0.00025 5.4E-09 80.6 22.5 146 833-1006 357-508 (668)
313 KOG0882 Cyclophilin-related pe 98.1 3.4E-05 7.4E-10 87.2 14.6 242 815-1078 29-314 (558)
314 PF15492 Nbas_N: Neuroblastoma 98.1 0.00027 5.9E-09 76.7 20.9 206 838-1079 46-269 (282)
315 PF10508 Proteasom_PSMB: Prote 98.1 4E-05 8.6E-10 94.3 16.8 342 141-551 43-405 (503)
316 KOG1824 TATA-binding protein-i 98.1 5.2E-05 1.1E-09 92.6 16.6 395 110-551 344-785 (1233)
317 KOG1832 HIV-1 Vpr-binding prot 98.1 1.9E-06 4.2E-11 103.1 4.5 204 826-1077 1092-1299(1516)
318 KOG4532 WD40-like repeat conta 98.1 0.00025 5.4E-09 75.6 19.5 206 894-1168 83-293 (344)
319 PRK11138 outer membrane biogen 98.1 0.00099 2.1E-08 80.0 27.5 234 847-1165 120-361 (394)
320 PF07433 DUF1513: Protein of u 98.1 0.0021 4.7E-08 72.0 27.2 207 838-1078 7-256 (305)
321 PTZ00429 beta-adaptin; Provisi 98.1 0.00021 4.4E-09 90.5 21.0 302 189-533 100-418 (746)
322 KOG1243 Protein kinase [Genera 98.1 4.5E-05 9.8E-10 91.7 14.3 259 199-512 259-517 (690)
323 KOG2314 Translation initiation 98.0 0.00079 1.7E-08 78.2 23.5 176 838-1043 213-406 (698)
324 PF12348 CLASP_N: CLASP N term 98.0 6.2E-05 1.3E-09 83.0 14.6 192 232-470 5-206 (228)
325 KOG2695 WD40 repeat protein [G 98.0 1.5E-05 3.3E-10 87.3 8.4 155 899-1081 228-388 (425)
326 PF13360 PQQ_2: PQQ-like domai 98.0 0.0015 3.3E-08 72.2 24.3 216 819-1075 6-236 (238)
327 PF08450 SGL: SMP-30/Gluconola 98.0 0.008 1.7E-07 67.1 29.7 198 840-1078 4-221 (246)
328 PLN03200 cellulose synthase-in 97.9 0.00029 6.3E-09 95.8 20.5 283 195-531 489-791 (2102)
329 COG5170 CDC55 Serine/threonine 97.9 0.00014 3.1E-09 78.5 14.0 228 834-1078 25-319 (460)
330 KOG1060 Vesicle coat complex A 97.9 0.00042 9.2E-09 83.7 19.3 282 188-490 65-475 (968)
331 KOG2066 Vacuolar assembly/sort 97.9 0.00019 4.1E-09 86.9 14.8 188 835-1069 39-233 (846)
332 PRK11138 outer membrane biogen 97.8 0.0036 7.8E-08 75.1 24.6 193 848-1078 161-362 (394)
333 PRK04043 tolB translocation pr 97.7 0.0073 1.6E-07 72.7 26.1 153 885-1072 189-360 (419)
334 KOG2066 Vacuolar assembly/sort 97.7 0.0018 3.9E-08 78.7 20.3 150 885-1078 41-196 (846)
335 KOG1645 RING-finger-containing 97.7 0.0014 3.1E-08 73.7 18.0 222 828-1078 186-428 (463)
336 PF00400 WD40: WD domain, G-be 97.7 0.0001 2.3E-09 56.4 6.6 37 875-911 3-39 (39)
337 PF08450 SGL: SMP-30/Gluconola 97.7 0.011 2.4E-07 65.9 25.7 198 819-1043 25-238 (246)
338 KOG0213 Splicing factor 3b, su 97.7 0.00086 1.9E-08 80.2 16.9 329 146-535 485-856 (1172)
339 KOG2137 Protein kinase [Signal 97.7 0.00049 1.1E-08 83.4 14.7 172 189-412 344-518 (700)
340 KOG1645 RING-finger-containing 97.7 0.0019 4.1E-08 72.8 18.1 95 859-976 175-270 (463)
341 KOG1275 PAB-dependent poly(A) 97.7 0.00022 4.8E-09 87.0 11.7 178 956-1249 149-340 (1118)
342 PF08596 Lgl_C: Lethal giant l 97.7 0.0057 1.2E-07 72.6 23.4 231 885-1167 3-300 (395)
343 PF07433 DUF1513: Protein of u 97.7 0.0067 1.5E-07 68.1 22.1 199 943-1166 9-256 (305)
344 KOG2114 Vacuolar assembly/sort 97.6 0.0026 5.7E-08 77.9 20.0 154 889-1069 29-201 (933)
345 KOG1275 PAB-dependent poly(A) 97.6 0.00082 1.8E-08 82.3 15.6 182 846-1067 146-340 (1118)
346 KOG2259 Uncharacterized conser 97.6 0.00037 8E-09 82.7 12.4 244 207-467 210-472 (823)
347 COG1413 FOG: HEAT repeat [Ener 97.6 0.0012 2.7E-08 77.3 17.1 242 194-512 43-306 (335)
348 COG5170 CDC55 Serine/threonine 97.6 0.00063 1.4E-08 73.7 12.6 231 883-1160 26-312 (460)
349 KOG2137 Protein kinase [Signal 97.6 0.00049 1.1E-08 83.4 13.0 173 361-536 349-524 (700)
350 KOG3617 WD40 and TPR repeat-co 97.6 0.0008 1.7E-08 81.2 14.2 92 815-913 40-131 (1416)
351 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.076 1.6E-06 57.0 27.2 193 843-1075 18-212 (354)
352 PF10508 Proteasom_PSMB: Prote 97.6 0.0021 4.6E-08 79.2 18.5 266 196-513 40-322 (503)
353 KOG2025 Chromosome condensatio 97.6 0.0013 2.8E-08 78.8 15.5 203 194-507 82-291 (892)
354 KOG2114 Vacuolar assembly/sort 97.6 0.0039 8.5E-08 76.4 19.7 198 817-1029 44-256 (933)
355 PLN03200 cellulose synthase-in 97.5 0.002 4.3E-08 88.1 18.0 286 195-536 447-751 (2102)
356 PF12717 Cnd1: non-SMC mitotic 97.5 0.00023 5E-09 75.2 7.4 113 415-531 1-113 (178)
357 KOG0212 Uncharacterized conser 97.5 0.0012 2.6E-08 77.3 13.7 373 115-527 17-461 (675)
358 KOG0915 Uncharacterized conser 97.5 0.0039 8.6E-08 80.6 19.3 337 194-573 818-1209(1702)
359 PF12348 CLASP_N: CLASP N term 97.5 0.0024 5.3E-08 70.3 15.7 165 361-529 53-227 (228)
360 KOG3617 WD40 and TPR repeat-co 97.4 0.0016 3.4E-08 78.8 14.1 111 941-1069 17-131 (1416)
361 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.051 1.1E-06 58.3 23.7 267 847-1159 63-353 (354)
362 TIGR02270 conserved hypothetic 97.4 0.0028 6.2E-08 75.2 16.3 151 234-468 54-205 (410)
363 COG1413 FOG: HEAT repeat [Ener 97.4 0.0016 3.6E-08 76.3 14.4 187 234-509 43-241 (335)
364 cd00216 PQQ_DH Dehydrogenases 97.4 0.032 6.8E-07 68.9 26.2 208 848-1078 62-328 (488)
365 cd00020 ARM Armadillo/beta-cat 97.4 0.00054 1.2E-08 66.7 8.3 109 401-509 6-119 (120)
366 COG5096 Vesicle coat complex, 97.4 0.0038 8.3E-08 77.7 17.3 243 192-532 53-296 (757)
367 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00015 3.4E-09 87.5 4.2 199 929-1165 1092-1299(1516)
368 KOG3621 WD40 repeat-containing 97.3 0.022 4.8E-07 68.8 21.1 123 834-973 32-155 (726)
369 KOG1920 IkappaB kinase complex 97.3 0.025 5.4E-07 72.1 22.4 198 836-1069 69-274 (1265)
370 PF04841 Vps16_N: Vps16, N-ter 97.3 0.05 1.1E-06 65.4 24.5 201 818-1037 63-267 (410)
371 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.00071 1.5E-08 63.4 6.6 84 211-298 2-87 (97)
372 COG5181 HSH155 U2 snRNP splice 97.2 0.0027 5.7E-08 74.8 12.4 216 201-477 175-395 (975)
373 PF12717 Cnd1: non-SMC mitotic 97.2 0.0024 5.1E-08 67.5 11.0 113 376-493 1-113 (178)
374 KOG1008 Uncharacterized conser 97.2 0.00023 5E-09 84.0 3.5 202 838-1069 59-275 (783)
375 KOG4653 Uncharacterized conser 97.2 0.003 6.4E-08 77.5 12.5 159 360-531 767-934 (982)
376 PF13646 HEAT_2: HEAT repeats; 97.2 0.0013 2.9E-08 60.4 7.7 85 404-505 1-87 (88)
377 TIGR02270 conserved hypothetic 97.1 0.0089 1.9E-07 71.1 16.3 209 196-510 88-296 (410)
378 smart00320 WD40 WD40 repeats. 97.1 0.00095 2.1E-08 49.1 5.3 39 825-863 2-40 (40)
379 KOG1243 Protein kinase [Genera 97.1 0.00037 8E-09 84.2 4.4 174 359-536 328-502 (690)
380 PF13646 HEAT_2: HEAT repeats; 97.1 0.0034 7.3E-08 57.7 9.7 85 365-466 3-88 (88)
381 PF11768 DUF3312: Protein of u 97.1 0.0017 3.7E-08 77.1 9.4 73 833-913 257-329 (545)
382 PF02985 HEAT: HEAT repeat; I 97.1 0.00071 1.5E-08 49.1 3.7 30 235-264 1-30 (31)
383 KOG0166 Karyopherin (importin) 97.1 0.0098 2.1E-07 71.0 15.3 281 209-536 80-380 (514)
384 PF05918 API5: Apoptosis inhib 97.0 0.015 3.2E-07 70.7 16.8 275 199-534 28-320 (556)
385 KOG1241 Karyopherin (importin) 97.0 0.037 7.9E-07 67.6 19.7 293 194-536 35-376 (859)
386 COG5218 YCG1 Chromosome conden 97.0 0.0097 2.1E-07 70.0 14.2 178 187-467 81-263 (885)
387 KOG4224 Armadillo repeat prote 97.0 0.0048 1E-07 68.7 11.0 251 195-506 209-474 (550)
388 PF11768 DUF3312: Protein of u 97.0 0.041 9E-07 65.8 19.2 73 937-1017 258-330 (545)
389 PF06433 Me-amine-dh_H: Methyl 96.9 0.14 3.1E-06 58.3 22.6 262 823-1168 25-331 (342)
390 cd00020 ARM Armadillo/beta-cat 96.9 0.0025 5.4E-08 62.0 7.7 109 360-470 6-120 (120)
391 PF06977 SdiA-regulated: SdiA- 96.9 0.18 4E-06 55.8 23.1 218 820-1066 3-247 (248)
392 KOG1920 IkappaB kinase complex 96.9 0.065 1.4E-06 68.6 21.3 71 938-1015 68-138 (1265)
393 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0031 6.6E-08 59.1 7.6 89 380-469 3-95 (97)
394 KOG1820 Microtubule-associated 96.9 0.023 5E-07 72.2 17.7 211 224-486 243-457 (815)
395 PRK02888 nitrous-oxide reducta 96.9 0.064 1.4E-06 65.7 20.4 113 996-1158 286-405 (635)
396 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0016 3.5E-08 54.2 4.8 53 209-261 1-55 (55)
397 KOG1949 Uncharacterized conser 96.8 0.027 5.8E-07 67.7 15.6 145 197-389 177-328 (1005)
398 KOG0166 Karyopherin (importin) 96.8 0.049 1.1E-06 65.2 17.9 342 141-560 114-479 (514)
399 cd00216 PQQ_DH Dehydrogenases 96.8 0.16 3.4E-06 62.8 23.2 148 965-1166 257-433 (488)
400 PF00930 DPPIV_N: Dipeptidyl p 96.7 0.37 8E-06 56.9 25.4 214 820-1072 27-271 (353)
401 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.049 1.1E-06 51.8 13.8 101 886-1012 2-110 (111)
402 PF08596 Lgl_C: Lethal giant l 96.7 0.079 1.7E-06 63.0 19.1 207 827-1043 78-319 (395)
403 PF08553 VID27: VID27 cytoplas 96.7 0.045 9.8E-07 69.4 17.7 145 896-1069 494-647 (794)
404 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.097 2.1E-06 49.8 15.3 95 954-1064 15-109 (111)
405 KOG1820 Microtubule-associated 96.6 0.023 5E-07 72.3 14.6 199 194-446 253-458 (815)
406 KOG0212 Uncharacterized conser 96.6 0.023 5E-07 67.0 13.1 261 207-515 12-284 (675)
407 COG5215 KAP95 Karyopherin (imp 96.6 0.12 2.5E-06 61.2 18.5 294 207-528 146-456 (858)
408 PF04841 Vps16_N: Vps16, N-ter 96.5 0.83 1.8E-05 55.0 26.6 185 858-1078 62-255 (410)
409 PF02985 HEAT: HEAT repeat; I 96.5 0.0039 8.5E-08 45.2 4.2 29 442-470 1-29 (31)
410 PF00780 CNH: CNH domain; Int 96.5 1.4 3E-05 49.9 27.0 160 845-1022 5-171 (275)
411 KOG0915 Uncharacterized conser 96.5 0.17 3.7E-06 66.4 20.6 264 193-465 1038-1342(1702)
412 KOG4640 Anaphase-promoting com 96.4 0.012 2.6E-07 70.2 9.5 91 940-1037 22-113 (665)
413 KOG1008 Uncharacterized conser 96.3 0.0021 4.6E-08 76.1 2.6 155 885-1068 58-224 (783)
414 PRK02888 nitrous-oxide reducta 96.3 0.3 6.5E-06 60.1 20.7 183 843-1070 200-405 (635)
415 PF12460 MMS19_C: RNAPII trans 96.3 0.087 1.9E-06 63.6 16.4 202 195-472 190-396 (415)
416 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.1 2.4E-05 55.7 26.3 58 965-1022 272-339 (527)
417 PF06977 SdiA-regulated: SdiA- 96.2 1.1 2.4E-05 49.8 23.2 173 879-1079 17-210 (248)
418 PF04053 Coatomer_WDAD: Coatom 96.2 0.27 5.9E-06 59.3 19.7 142 883-1069 32-173 (443)
419 KOG1824 TATA-binding protein-i 96.2 0.14 2.9E-06 64.1 16.9 304 195-558 477-800 (1233)
420 KOG2259 Uncharacterized conser 96.1 0.067 1.5E-06 64.3 13.5 237 268-560 187-486 (823)
421 COG5098 Chromosome condensatio 96.1 0.15 3.2E-06 61.5 16.2 107 404-512 301-417 (1128)
422 PF06433 Me-amine-dh_H: Methyl 96.1 0.46 9.9E-06 54.4 19.6 210 839-1080 98-331 (342)
423 PF03178 CPSF_A: CPSF A subuni 96.1 1.9 4.1E-05 50.2 25.7 181 857-1069 2-202 (321)
424 KOG3621 WD40 repeat-containing 96.1 0.035 7.6E-07 67.2 11.1 120 882-1017 32-155 (726)
425 COG3490 Uncharacterized protei 95.9 1.8 4E-05 47.6 22.0 221 822-1075 55-316 (366)
426 COG0823 TolB Periplasmic compo 95.9 0.22 4.9E-06 59.8 17.0 176 819-1020 174-362 (425)
427 COG0823 TolB Periplasmic compo 95.9 1 2.2E-05 54.3 22.5 116 940-1073 194-318 (425)
428 KOG1059 Vesicle coat complex A 95.9 0.22 4.7E-06 60.7 16.3 262 213-511 124-402 (877)
429 PF14583 Pectate_lyase22: Olig 95.8 5.3 0.00012 46.8 28.8 223 819-1075 12-278 (386)
430 KOG1949 Uncharacterized conser 95.8 0.05 1.1E-06 65.6 10.8 117 354-473 213-334 (1005)
431 KOG1078 Vesicle coat complex C 95.8 0.11 2.4E-06 63.9 13.8 276 192-536 243-519 (865)
432 PF04053 Coatomer_WDAD: Coatom 95.8 0.78 1.7E-05 55.5 21.2 145 831-1016 28-173 (443)
433 COG5215 KAP95 Karyopherin (imp 95.6 0.84 1.8E-05 54.4 19.4 354 144-515 270-673 (858)
434 PF03178 CPSF_A: CPSF A subuni 95.6 1.5 3.2E-05 51.1 22.1 206 837-1066 28-262 (321)
435 COG5240 SEC21 Vesicle coat com 95.5 0.23 5E-06 58.8 14.2 314 190-536 220-542 (898)
436 smart00320 WD40 WD40 repeats. 95.4 0.033 7.2E-07 40.4 5.2 36 876-911 5-40 (40)
437 COG3391 Uncharacterized conser 95.4 3.3 7.2E-05 49.4 24.8 206 838-1079 76-293 (381)
438 KOG2079 Vacuolar assembly/sort 95.4 0.058 1.3E-06 68.1 9.9 75 997-1081 98-172 (1206)
439 PF02897 Peptidase_S9_N: Proly 95.4 8.1 0.00018 46.6 28.6 202 837-1072 125-360 (414)
440 KOG1248 Uncharacterized conser 95.4 0.59 1.3E-05 60.4 18.5 264 209-521 630-909 (1176)
441 KOG1061 Vesicle coat complex A 95.3 0.063 1.4E-06 66.1 9.6 200 234-527 86-287 (734)
442 COG5096 Vesicle coat complex, 95.3 0.32 7E-06 61.2 15.8 130 373-509 102-236 (757)
443 PF10521 DUF2454: Protein of u 95.2 0.12 2.6E-06 58.9 11.0 59 230-288 115-179 (282)
444 PF08553 VID27: VID27 cytoplas 95.2 0.29 6.2E-06 62.4 15.2 105 1005-1156 501-605 (794)
445 PF04826 Arm_2: Armadillo-like 95.1 0.29 6.4E-06 54.5 13.3 217 237-501 15-253 (254)
446 PF13513 HEAT_EZ: HEAT-like re 95.1 0.051 1.1E-06 45.1 5.7 53 416-468 1-55 (55)
447 KOG1077 Vesicle coat complex A 95.0 1.1 2.3E-05 54.8 18.1 104 409-518 336-441 (938)
448 PF00780 CNH: CNH domain; Int 94.9 6.8 0.00015 44.2 24.4 208 837-1079 37-265 (275)
449 PF14655 RAB3GAP2_N: Rab3 GTPa 94.8 10 0.00022 45.3 25.9 91 988-1079 309-408 (415)
450 KOG4640 Anaphase-promoting com 94.8 0.11 2.4E-06 62.3 9.3 71 836-913 21-92 (665)
451 KOG4653 Uncharacterized conser 94.6 1 2.2E-05 56.3 17.1 198 195-452 728-934 (982)
452 KOG1897 Damage-specific DNA bi 94.5 15 0.00033 47.1 26.8 211 836-1075 584-821 (1096)
453 PF08506 Cse1: Cse1; InterPro 94.4 2.6 5.6E-05 49.9 19.7 126 376-505 224-370 (370)
454 KOG2079 Vacuolar assembly/sort 94.4 0.11 2.4E-06 65.7 8.4 102 956-1068 101-202 (1206)
455 PF05004 IFRD: Interferon-rela 94.4 1.5 3.2E-05 50.6 17.2 120 236-397 45-164 (309)
456 PF05004 IFRD: Interferon-rela 94.4 1.2 2.7E-05 51.3 16.5 194 199-433 48-259 (309)
457 COG3386 Gluconolactonase [Carb 94.3 3.3 7.1E-05 47.7 19.5 184 838-1043 68-268 (307)
458 PF02897 Peptidase_S9_N: Proly 94.2 12 0.00025 45.2 25.7 245 800-1074 129-409 (414)
459 KOG2395 Protein involved in va 94.2 0.67 1.5E-05 54.8 13.6 147 895-1069 345-500 (644)
460 KOG2280 Vacuolar assembly/sort 94.2 2.4 5.2E-05 52.5 18.6 200 819-1037 67-267 (829)
461 KOG0414 Chromosome condensatio 93.9 1.6 3.5E-05 56.5 17.3 137 374-510 266-428 (1251)
462 PF12530 DUF3730: Protein of u 93.9 1.7 3.6E-05 48.2 15.8 164 196-418 2-176 (234)
463 COG5240 SEC21 Vesicle coat com 93.9 0.52 1.1E-05 56.0 11.9 70 192-263 262-332 (898)
464 KOG0567 HEAT repeat-containing 93.7 1.5 3.3E-05 47.9 14.3 189 233-468 66-278 (289)
465 TIGR03074 PQQ_membr_DH membran 93.7 9.2 0.0002 49.6 24.0 73 954-1026 260-354 (764)
466 PF05096 Glu_cyclase_2: Glutam 93.7 13 0.00029 41.4 21.9 160 885-1079 46-213 (264)
467 COG5656 SXM1 Importin, protein 93.4 6.4 0.00014 48.8 20.2 280 194-515 460-762 (970)
468 KOG2956 CLIP-associating prote 93.3 1.3 2.9E-05 51.9 13.9 154 356-518 324-485 (516)
469 COG3386 Gluconolactonase [Carb 93.3 14 0.00031 42.5 22.5 102 964-1079 143-252 (307)
470 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 7.6 0.00016 48.4 21.9 68 956-1025 122-198 (527)
471 KOG1916 Nuclear protein, conta 93.2 0.092 2E-06 64.9 4.8 189 831-1074 128-328 (1283)
472 KOG2444 WD40 repeat protein [G 93.2 0.27 6E-06 52.4 7.7 142 957-1157 33-177 (238)
473 PF10168 Nup88: Nuclear pore c 93.2 22 0.00047 45.9 26.0 90 885-976 86-183 (717)
474 KOG1992 Nuclear export recepto 93.2 0.44 9.6E-06 59.0 10.3 304 142-511 367-710 (960)
475 KOG1062 Vesicle coat complex A 93.1 4.2 9E-05 50.9 18.3 92 195-295 104-195 (866)
476 PF05096 Glu_cyclase_2: Glutam 92.9 19 0.0004 40.2 24.8 130 931-1079 36-167 (264)
477 KOG0168 Putative ubiquitin fus 92.9 3.1 6.6E-05 52.2 16.7 113 195-311 255-367 (1051)
478 COG3204 Uncharacterized protei 92.7 12 0.00026 41.9 19.4 177 832-1021 82-267 (316)
479 PRK13616 lipoprotein LpqB; Pro 92.7 2.6 5.7E-05 53.0 16.6 189 799-1012 354-564 (591)
480 PF14583 Pectate_lyase22: Olig 92.6 26 0.00056 41.2 27.2 222 801-1043 42-295 (386)
481 PF13251 DUF4042: Domain of un 92.6 1.1 2.3E-05 47.3 11.0 125 283-430 44-173 (182)
482 PF12719 Cnd3: Nuclear condens 92.6 1.7 3.8E-05 49.9 14.0 154 374-532 38-209 (298)
483 KOG1248 Uncharacterized conser 92.5 3.4 7.4E-05 53.8 17.1 200 194-439 697-906 (1176)
484 PF05694 SBP56: 56kDa selenium 92.5 6.1 0.00013 46.7 17.8 222 894-1165 86-350 (461)
485 KOG1897 Damage-specific DNA bi 92.4 28 0.00061 44.9 24.4 219 833-1066 304-563 (1096)
486 KOG2025 Chromosome condensatio 92.4 6.2 0.00013 48.7 18.2 149 132-317 77-229 (892)
487 PF05804 KAP: Kinesin-associat 92.2 1.5 3.1E-05 55.8 13.5 285 195-530 291-586 (708)
488 COG3490 Uncharacterized protei 92.2 17 0.00038 40.3 19.5 92 947-1043 121-238 (366)
489 PRK13616 lipoprotein LpqB; Pro 92.1 8.4 0.00018 48.6 20.1 159 836-1016 350-525 (591)
490 KOG4224 Armadillo repeat prote 92.1 2.3 5E-05 48.2 13.3 232 195-474 252-497 (550)
491 KOG1943 Beta-tubulin folding c 92.1 8.3 0.00018 49.9 19.6 118 401-519 340-466 (1133)
492 PF12719 Cnd3: Nuclear condens 92.0 2.2 4.8E-05 49.0 14.0 188 225-455 17-211 (298)
493 KOG2395 Protein involved in va 91.9 3 6.4E-05 49.7 14.3 99 956-1068 348-458 (644)
494 PF14655 RAB3GAP2_N: Rab3 GTPa 91.9 35 0.00075 41.0 26.0 41 1129-1169 308-349 (415)
495 TIGR03074 PQQ_membr_DH membran 91.8 14 0.0003 47.9 21.9 109 963-1079 335-487 (764)
496 KOG3630 Nuclear pore complex, 91.5 2.3 5E-05 54.7 13.7 152 878-1042 94-255 (1405)
497 PF12830 Nipped-B_C: Sister ch 91.4 5.1 0.00011 42.6 14.8 73 231-311 5-77 (187)
498 KOG1060 Vesicle coat complex A 91.3 2.9 6.4E-05 51.9 14.0 217 224-511 29-247 (968)
499 KOG1020 Sister chromatid cohes 91.2 15 0.00032 49.4 20.8 151 357-512 1221-1407(1692)
500 KOG1061 Vesicle coat complex A 91.2 3.6 7.7E-05 51.4 14.8 336 194-563 121-507 (734)
No 1
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=100.00 E-value=1e-128 Score=1153.86 Aligned_cols=1042 Identities=37% Similarity=0.547 Sum_probs=783.8
Q ss_pred cccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchh
Q 000861 132 ESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHY 211 (1249)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~ 211 (1249)
.+..+.+..+..++-...+-.-.+..+.+|--..+.+++.++++. ..++++|+++|+++|+||||+++...+
T Consensus 368 ~S~De~~~~~~~al~~~r~~~~~l~~~~dl~~~~q~~~~~~~~~~--------~~~~~~ga~l~vs~lts~IR~lk~~~t 439 (1431)
T KOG1240|consen 368 TSSDEIIDSISKALEFSRHLIENLDVIQDLKPEKQLWTARSSPNI--------KDPKEEGAVLFVSVLTSCIRALKTIQT 439 (1431)
T ss_pred cCCcHHHHHHHHHHhhhhhhcccchhhhccchHHhcccccCCccc--------CCccccceeeeHHHHHHHHHhhhcchh
Confidence 455667777777777777777788888999899999999998882 258999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCC-
Q 000861 212 RRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDD- 290 (1249)
Q Consensus 212 r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D- 290 (1249)
|++|++||..|+.+++||.++|||+||+++|++|+++.||++|+++|+++|.+|+.+||+|++||||||||.|++|+.|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~ 519 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDS 519 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHh
Q 000861 291 PEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELV 370 (1249)
Q Consensus 291 ~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 370 (1249)
...+||++||+||+.||.+|.||++.+|+++..|.++..+++ .....++++++++|++.+.+.|.+||
T Consensus 520 ~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nse------------t~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 520 SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSE------------TAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccc------------cccccccchHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998887765432 11233456799999999999999999
Q ss_pred cCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHc
Q 000861 371 MGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQAL 450 (1249)
Q Consensus 371 ~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L 450 (1249)
+ |+.|.||++||++|.+||.|||++++||+|||||+|||||+||+||+|||+.|+|||.|||+++++|||+|||+|+|
T Consensus 588 s--d~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 588 S--DSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGL 665 (1431)
T ss_pred c--CCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhc
Confidence 6 77899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhh
Q 000861 451 SDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLR 530 (1249)
Q Consensus 451 ~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~ 530 (1249)
+|+||+|+++||.||+.|||.|+++|+...+++..++||++|||.|||++++.+|.+++++|+.+|+||+|+|+|+|||.
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCHHHHHhccCCCCcHHHHHHHHHhhc-chhHHHHHhhhhhccCCCCcchhhhHHhhcccCccccccccc----
Q 000861 531 RQPASLASVKALLSCLKPPVSREVFYQVLENAR-SSDMLERQRKIWYNTSSQSKQQETADLLKRGAEDLSSIKCWP---- 605 (1249)
Q Consensus 531 ~~v~~i~~~~~ll~~l~~PlsR~vf~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 605 (1249)
.+|.+|.+++.|++||||||||+||+++++|.. .......++..|+....++++|.-.+...+.+|..+.-....
T Consensus 746 ~~v~~i~s~~~LlsclkpPVsRsv~~~l~r~~~ens~f~k~l~~~~~~s~~~s~d~~~~~~~~k~~g~l~~~e~~~~~~~ 825 (1431)
T KOG1240|consen 746 RPVIQIESKEVLLSCLKPPVSRSVFNQLLRWSDENSSFWKKLLERHYSSSGNSRDEFIKNYSSKRYGFLPFEEGAGSSKW 825 (1431)
T ss_pred ccHhhhcchHHHHHHhcCCCcHHHHHHHHHHhhcchHHHHHHHHHhhhccCccchhhhhcchhhhcccCCccccccchhh
Confidence 999999999999999999999999999999987 444445666778888888888777666666666554332222
Q ss_pred -----ccccCcCCCCCCCCCCCCCcccCCCCCchhhHhhcccchhccccccCCCCCCCC-cccccccccccccccccccc
Q 000861 606 -----DKQQSSEGHRPAGDTSKQPEFAQSDDNDGAKLRTLGSLVYNASSMADIRDPLCP-EKLLFSGFMSQQVSGVNSLR 679 (1249)
Q Consensus 606 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 679 (1249)
+++++.+...-..++ + ..++.|+..+++.+-... ......+...+ +.....++...++.+.+.+.
T Consensus 826 ~~~~~~~i~S~~~~e~~e~~-------l-~~k~~~~~~~r~~~~~~s-~~~~l~d~~~~~~~~~~~~v~~~~~n~~~t~~ 896 (1431)
T KOG1240|consen 826 SNTGFKKIKSEGKTELVEDK-------L-LEKDIFLIRSRKPKSNIS-NRVLLDDPAYPRNTNGREGVLTRQVNLVGTII 896 (1431)
T ss_pred hhhhcceeeccccccccccc-------c-chhchhhhcccCCccchh-hhhhhcCcccccccCCceeeeccccccccccc
Confidence 222222222222111 1 123334444444321111 01111122222 22333444444433333221
Q ss_pred cCCCCCCCCcccccccccccCCCCccccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCCcccccccccCCCCccee
Q 000861 680 CDKSSEGIPLYSFSMDKRAMGNLPVASDSVLQVNSLGIGSSTMPWMDTTNQSFSLASSVPPPNLVSGSFSISNGSKQFYR 759 (1249)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1249)
-+..++..++..+..-....+..+...++...++++..+..|....-+...+....+-+.+.++++....+.+.++.
T Consensus 897 ---~P~~~~~~~~~~d~n~~~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~~~t~~~~~~~vp~~ts~~~~~~t~~~~~~~ 973 (1431)
T KOG1240|consen 897 ---EPSNIHARVRRKDSNREGNESNMESPQNSKHLLPIGSPNKLNHTGSPRSTLLLDGNSVPTLTSSSVRVVTNLKPTKP 973 (1431)
T ss_pred ---ccccchhhhhhhhccccCCCccccCCCcchhhccCCCCCcccccCCCcccccccCCccceeeccceeeeeccCCccc
Confidence 13344444444332211122222222233333333333222222111111111122223334445554445554444
Q ss_pred eeccCCCCCccc-cccccccCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCCCCccCCCCcEEEEeccccCce
Q 000861 760 VVHEPEGRENDQ-MASVNCKFPEMGTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQEHCSAV 838 (1249)
Q Consensus 760 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~~~G~lv~~L~~H~~~V 838 (1249)
+.+.+.++.+.+ ..++.+...++++...+........+. -.....+.|..... ..+...|+|+|.+|++|++|+..|
T Consensus 974 ~~p~~ns~~~~~~~r~~~~~~dL~~~~~~~~~~~ss~~~s-~p~~~~~ep~~~~~-~~p~~gW~p~G~lVAhL~Ehs~~v 1051 (1431)
T KOG1240|consen 974 VMPVPNSTANNQVERSLTCLNDLEMLTVSIPKRPSSESIS-HPCLLNSEPSAWSV-GSPPPGWNPRGILVAHLHEHSSAV 1051 (1431)
T ss_pred ccccCCCCcccchhHHHHHHHhhhhhhhhcccccchhhcc-chhhhccCCchhhc-CCCCCCCCccceEeehhhhccccc
Confidence 455444443332 334455555666655443322222211 01111222222222 345677999999999999999999
Q ss_pred eEEEEcCCC-CEEEEEECCCcEEEEECCCCccc-cccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccc
Q 000861 839 NEIAISHDH-SFFVSASDDSTVKVWDSRKLEKD-ISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHIS 916 (1249)
Q Consensus 839 ~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~-~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~ 916 (1249)
+.++.+++. .+|+|||.||+||+||....+.. .++++..+|...++++.++.++++++.+|+++.||.|++.+++..
T Consensus 1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~- 1130 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY- 1130 (1431)
T ss_pred cceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc-
Confidence 999998766 89999999999999999988765 788999999988889999999999999999999999999999931
Q ss_pred cCCCccccccCccceeeecC-CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 917 RGLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 917 ~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
+..++.. ...+..+. ..|.+.++.+|.....+ ..+++++..+.|..||+++....|+++....+|.|++++.+
T Consensus 1131 ----~~~~~~~-~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1131 ----NVSKRVA-TQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred ----cccccee-eeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence 1111111 22333333 45678888777776533 48999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-CCCeEEEEECCCCcee
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl~tg~~~ 1074 (1249)
|.++|+++|+..|.+.+||+|++.++.+|.+++..+|+.+.. +|... .+...+.++. +.+.|.+|++++|.|.
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~-~~~~~-----~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWL-CPTYP-----QESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEe-eccCC-----CCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999999999999999998 66543 1122344444 5789999999999999
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRW 1154 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriW 1154 (1249)
.+++...+ ...+.+.. |.. +. ..++...++.|....+.|.+++||.|+.||.|
T Consensus 1279 ~vl~~s~~-----~p~ls~~~--Ps~------~~--------------~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1279 TVLWASDG-----APILSYAL--PSN------DA--------------RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred EEEEcCCC-----Ccchhhhc--ccc------cC--------------CCCCcccceeeecccCCceeeecCCccceeec
Confidence 99996522 11111110 111 00 00222335666665666699999999999999
Q ss_pred eCCCCCcc-EEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhh----HHHHHhhhcccccCCcccceeEEEee
Q 000861 1155 DHCSPGRS-YCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLT----AKAVLAAAATDSAGCHRDSILSLGSV 1229 (1249)
Q Consensus 1155 Dl~~~~~~-~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~----~~~~~~~~~~~~l~~H~d~I~~la~~ 1229 (1249)
|...++.+ +.+.|+.....++...|..+.+.+.+++++..........+ ..........+...+|.+.|++++++
T Consensus 1332 D~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1332 DPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred cCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence 99999887 67777765556677788888899988888744333311111 12223333344667899999999977
Q ss_pred ecCCCEEEEEeCCCeEEEcC
Q 000861 1230 KLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1230 s~dg~~LaSgs~DG~IkVWd 1249 (1249)
..+..+|+++|+||.|+||+
T Consensus 1412 ~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCccEEEEecCCCeeeecC
Confidence 77789999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-41 Score=359.71 Aligned_cols=329 Identities=16% Similarity=0.256 Sum_probs=284.7
Q ss_pred ccCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEEC
Q 000861 777 CKFPEMGTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASD 855 (1249)
Q Consensus 777 ~~~~~~g~~~~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~ 855 (1249)
|..+..||.+.+. .+.|+|+|..+++++.|.+.++|+ .+-.+..+.++|+..|.|++|+|||+.||+|+.
T Consensus 107 CssS~~GH~e~Vl---------~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 107 CSSSIAGHGEAVL---------SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred eccccCCCCCcEE---------EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 4455566665554 567899999999999889999999 577899999999999999999999999999999
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-----CCCEEEEEeCCCeEEEEEccccccCCCccccccCccc
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-----HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISD 930 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-----dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~ 930 (1249)
||+|++||..+++.. -..+.+|...|++++|.| ..++|++++.||+++|||+. .+ .+
T Consensus 178 dg~I~lwdpktg~~~-----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-----~~--------~~ 239 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQI-----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-----LG--------TC 239 (480)
T ss_pred CCeEEEecCCCCCcc-----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-----Cc--------eE
Confidence 999999999998853 347889999999999986 46799999999999999998 12 25
Q ss_pred eeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc-----------CCCC
Q 000861 931 IKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG-----------PCGN 999 (1249)
Q Consensus 931 i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s-----------pdg~ 999 (1249)
+..+.+|..+|+|+. |-.++ ++++|+.|++|++|+...|.+...++ +|...|+.++++ |.++
T Consensus 240 ~~~lsgHT~~VTCvr-wGG~g----liySgS~DrtIkvw~a~dG~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVR-WGGEG----LIYSGSQDRTIKVWRALDGKLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred EEEeccCccceEEEE-EcCCc----eEEecCCCceEEEEEccchhHHHhhc--ccchheeeeeccchhhhhccccccccc
Confidence 788899999999999 87553 99999999999999999999998885 477788888766 3343
Q ss_pred -------------------------EEEEEecCCcEEEEeCCC-CCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCE
Q 000861 1000 -------------------------WFVSGSSRGVLTLWDLRF-LVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPL 1053 (1249)
Q Consensus 1000 -------------------------~L~sgs~dG~I~lWDlr~-~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~ 1053 (1249)
.|++|+.|+++.+|+... .+++.... +|..-|+.+.| +|++. +
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~f-SPd~r---------~ 381 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSF-SPDGR---------Y 381 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEE-CCCcc---------E
Confidence 499999999999999764 44666654 79999999999 99999 9
Q ss_pred EEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEE
Q 000861 1054 IYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRS 1133 (1249)
Q Consensus 1054 l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~s 1133 (1249)
|++++-|..|++||.++|+.+..|++|- ..|..
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv-----------------------------------------------~~VYq 414 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHV-----------------------------------------------AAVYQ 414 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhcc-----------------------------------------------ceeEE
Confidence 9999999999999999999888777433 38999
Q ss_pred EeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhc
Q 000861 1134 LLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAA 1212 (1249)
Q Consensus 1134 l~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~ 1212 (1249)
++|+.|. .|++|+.|.++++||+.+.+...-
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D------------------------------------------------ 446 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD------------------------------------------------ 446 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeeccc------------------------------------------------
Confidence 9999999 999999999999999987655322
Q ss_pred ccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1213 TDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1213 ~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+.||.|.|.++. |+|||..+++|+.|.++++|.
T Consensus 447 ---LpGh~DEVf~vD-wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 ---LPGHADEVFAVD-WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---CCCCCceEEEEE-ecCCCceeecCCCceEEEeec
Confidence 347999999999 999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=333.87 Aligned_cols=304 Identities=18% Similarity=0.251 Sum_probs=256.1
Q ss_pred CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEe
Q 000861 823 PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGA 902 (1249)
Q Consensus 823 ~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs 902 (1249)
|-.++-..+.||.++|.|++|+|+|+.+||||.|.++|+||+.+.. +..+.++|...|.|++|+|||+.||+|+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT------p~~t~KgH~~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET------PLFTCKGHKNWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC------cceeecCCccEEEEEEECCCcchhhccc
Confidence 3446778899999999999999999999999999999999999877 5678999999999999999999999999
Q ss_pred CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCC--CCccEEEEEECCCeEEEEEcCCCccceee
Q 000861 903 CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN--CASHMFMYSTQNCGIHLWDTRSNSNTWTL 980 (1249)
Q Consensus 903 ~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~--~~g~~L~sgs~dg~I~iwDlrt~~~~~~l 980 (1249)
.||+|++||.. . |+ ...+.+.+|...|++++ |.|-. +..+.+++++.||.|+|||+..++++..+
T Consensus 177 ~dg~I~lwdpk-t----g~-------~~g~~l~gH~K~It~La-wep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 177 KDGSIRLWDPK-T----GQ-------QIGRALRGHKKWITALA-WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred cCCeEEEecCC-C----CC-------cccccccCcccceeEEe-ecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence 99999999988 2 22 24567888999999999 87642 22568999999999999999999998777
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEc-----------CCCCCc----
Q 000861 981 KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFV-----------PPPNAA---- 1045 (1249)
Q Consensus 981 ~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~s-----------p~g~~~---- 1045 (1249)
.+|...|+|+.|.-+| ++++|+.|++|++|+...|.+++.++ +|...|+.++. + |.+...
T Consensus 244 --sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lal-sTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 244 --SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLAL-STDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred --ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc-ccchheeeeec-cchhhhhccccccccccCCChH
Confidence 6799999999998766 99999999999999999999999876 69899999887 4 223210
Q ss_pred ------------ccCCCCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccc
Q 000861 1046 ------------VSTTARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNV 1112 (1249)
Q Consensus 1046 ------------~~~~~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~ 1112 (1249)
.....+..+++|+.|.++.+|+....+ ++..
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r------------------------------------ 362 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR------------------------------------ 362 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh------------------------------------
Confidence 001133469999999999999865322 2111
Q ss_pred cccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEee
Q 000861 1113 NQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQ 1191 (1249)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~ 1191 (1249)
..+|..-|+.+.|+||+ ++++++.|..|++||-.+++....
T Consensus 363 -----------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--------------------------- 404 (480)
T KOG0271|consen 363 -----------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--------------------------- 404 (480)
T ss_pred -----------hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh---------------------------
Confidence 13455589999999999 999999999999999998876433
Q ss_pred ccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1192 ERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1192 e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
++||-+.|..++ |+.|.++|+|||.|.++|||+
T Consensus 405 ------------------------fRGHv~~VYqva-wsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 405 ------------------------FRGHVAAVYQVA-WSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ------------------------hhhccceeEEEE-eccCccEEEEcCCCceEEEEE
Confidence 457899999999 999999999999999999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-37 Score=333.21 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=253.0
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC--CCEEEEEeCCCeEEEE
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH--SAQVVVGACDGIIHMF 910 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd--g~~Lasgs~Dg~I~vw 910 (1249)
|-+.+|..+.|+.|++.|||||.+|.++||+..++. ...++.+|.+.|.++.|+|. +..+|+|+.||++++|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~------~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN------LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc------eeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 457899999999999999999999999999999886 47799999999999999996 5699999999999999
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceE
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS 990 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~ 990 (1249)
+++ +. .++..+.+|...|..++ |+|+ |++|++++.|.+-++||++++..+... .+|...|.
T Consensus 247 ~~~------~e-------~~l~~l~gH~~RVs~Va-fHPs---G~~L~TasfD~tWRlWD~~tk~ElL~Q--EGHs~~v~ 307 (459)
T KOG0272|consen 247 KLS------QE-------TPLQDLEGHLARVSRVA-FHPS---GKFLGTASFDSTWRLWDLETKSELLLQ--EGHSKGVF 307 (459)
T ss_pred ccC------CC-------cchhhhhcchhhheeee-ecCC---CceeeecccccchhhcccccchhhHhh--cccccccc
Confidence 998 21 25777888999999999 9999 899999999999999999999876544 67999999
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCC
Q 000861 991 SLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070 (1249)
Q Consensus 991 sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t 1070 (1249)
+++|.+||..+++|+.|..-+|||+|++.++-.+. +|..+|..+.| +|+|. .+++|++|++++|||++.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~f-sPNGy---------~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAF-SPNGY---------HLATGSSDNTCKVWDLRM 376 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeE-CCCce---------EEeecCCCCcEEEeeecc
Confidence 99999999999999999999999999999998876 59999999999 99998 999999999999999998
Q ss_pred CceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCC-C-eEEEEeCC
Q 000861 1071 GSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG-G-DLLTGGTD 1148 (1249)
Q Consensus 1071 g~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd-g-~L~tgs~D 1148 (1249)
.++..++.. |..-|+.+.|+|+ | +|+|+|.|
T Consensus 377 r~~ly~ipA-----------------------------------------------H~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 377 RSELYTIPA-----------------------------------------------HSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cccceeccc-----------------------------------------------ccchhhheEecccCCeEEEEcccC
Confidence 777555543 3337888999984 4 99999999
Q ss_pred CcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEe
Q 000861 1149 LKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGS 1228 (1249)
Q Consensus 1149 g~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~ 1228 (1249)
+++++|...+..+++.+ .||.+.|.+++
T Consensus 410 ~t~kiWs~~~~~~~ksL---------------------------------------------------aGHe~kV~s~D- 437 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSL---------------------------------------------------AGHEGKVISLD- 437 (459)
T ss_pred cceeeecCCCcccchhh---------------------------------------------------cCCccceEEEE-
Confidence 99999999887765544 37889999999
Q ss_pred eecCCCEEEEEeCCCeEEEcC
Q 000861 1229 VKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1229 ~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+++++.+++|++.|.+||+|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=330.34 Aligned_cols=275 Identities=17% Similarity=0.210 Sum_probs=249.5
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCC--CCEEEEEECCCcEEEEECCCCccccccce
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHD--HSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spd--g~~laTgs~DgtVkIWD~~~~~~~~~~~~ 875 (1249)
.+.|+.|+..+++++.++..++|+ |++.++.+|.||++.|.++.|+|. +.-+|||+.||++++|++.+.. +
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------~ 253 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------P 253 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc------c
Confidence 567899999999998888999999 899999999999999999999997 5689999999999999999865 4
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
...+.+|..+|..++|+|+|++|++++.|.+-++||+. ++. .+....+|...|.+++ |++| |.
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-----tk~--------ElL~QEGHs~~v~~ia-f~~D---GS 316 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-----TKS--------ELLLQEGHSKGVFSIA-FQPD---GS 316 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccc-----cch--------hhHhhcccccccceeE-ecCC---Cc
Confidence 66889999999999999999999999999999999999 121 3455678999999999 9999 78
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
++++|+.|..=++||+|+++++-.+ .+|...|.++.|+|+|..|+||+.|++++|||+|...++..+. +|..-|..+
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L--~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~V 393 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFL--AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQV 393 (459)
T ss_pred eeeccCccchhheeecccCcEEEEe--cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhhe
Confidence 9999999999999999999998877 5599999999999999999999999999999999999988876 599999999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQK 1115 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~ 1115 (1249)
+| .|.. +.+|++++.|+++++|..+++++.+.+.+|.+
T Consensus 394 k~-~p~~--------g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--------------------------------- 431 (459)
T KOG0272|consen 394 KY-SPQE--------GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--------------------------------- 431 (459)
T ss_pred Ee-cccC--------CeEEEEcccCcceeeecCCCcccchhhcCCcc---------------------------------
Confidence 99 9832 35999999999999999999999888875443
Q ss_pred ccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1116 YRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1116 ~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
.|.++.+++|+ +++|++.|+++++|.
T Consensus 432 --------------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 --------------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------ceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999 999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=302.55 Aligned_cols=294 Identities=22% Similarity=0.323 Sum_probs=259.1
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeE
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGII 907 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I 907 (1249)
-.+|+||.+.|.++.|++|+++++++|.||.+.|||.-+..+ ...++.....|..++|+|.|+++|+|+-|+..
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK------~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK------VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc------eeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 378999999999999999999999999999999999988774 44566677889999999999999999999999
Q ss_pred EEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC
Q 000861 908 HMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
.||++. .....+.+ ...+.+.+|.+.+.|+. |-+|+ .|++++.|.++.+||+++++.+..+ .+|.+
T Consensus 122 siy~ls-~~d~~g~~------~v~r~l~gHtgylScC~-f~dD~----~ilT~SGD~TCalWDie~g~~~~~f--~GH~g 187 (343)
T KOG0286|consen 122 SIYPLS-TRDAEGNV------RVSRELAGHTGYLSCCR-FLDDN----HILTGSGDMTCALWDIETGQQTQVF--HGHTG 187 (343)
T ss_pred EEEecc-cccccccc------eeeeeecCccceeEEEE-EcCCC----ceEecCCCceEEEEEcccceEEEEe--cCCcc
Confidence 999998 22112221 24567889999999998 87773 8999999999999999999998888 57999
Q ss_pred ceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 988 YVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 988 ~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
.|.++.++| +++++++|+-|+..++||+|.+.++++|. +|+..|++++| .|+|. -+++|+.|++.++|
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~f-fP~G~---------afatGSDD~tcRly 256 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRF-FPSGD---------AFATGSDDATCRLY 256 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEE-ccCCC---------eeeecCCCceeEEE
Confidence 999999999 89999999999999999999999999986 69999999999 99998 79999999999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|++..+.+..|... ....+|++++||-.| +|++|
T Consensus 257 DlRaD~~~a~ys~~---------------------------------------------~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 257 DLRADQELAVYSHD---------------------------------------------SIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eecCCcEEeeeccC---------------------------------------------cccCCceeEEEcccccEEEee
Confidence 99998888887621 111289999999999 89999
Q ss_pred eCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeE
Q 000861 1146 GTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILS 1225 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~ 1225 (1249)
..|.++.+||.-.++..-.+ .||...|++
T Consensus 292 y~d~~c~vWDtlk~e~vg~L---------------------------------------------------~GHeNRvSc 320 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVL---------------------------------------------------AGHENRVSC 320 (343)
T ss_pred ecCCceeEeeccccceEEEe---------------------------------------------------eccCCeeEE
Confidence 99999999999777665444 378999999
Q ss_pred EEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1226 LGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1226 la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+. .+|||..|+|||.|.++|||.
T Consensus 321 l~-~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 321 LG-VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EE-ECCCCcEEEecchhHheeecC
Confidence 99 899999999999999999994
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=293.03 Aligned_cols=308 Identities=19% Similarity=0.277 Sum_probs=272.0
Q ss_pred CCCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC
Q 000861 817 PDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA 896 (1249)
Q Consensus 817 ~~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~ 896 (1249)
+...|-|+-.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...+.+|...+.++.|+..|+
T Consensus 90 ~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~------e~~LrGHt~sv~di~~~a~Gk 163 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL------ERSLRGHTDSVFDISFDASGK 163 (406)
T ss_pred ChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh------hhhhhccccceeEEEEecCcc
Confidence 35569988889999999999999999999999999999999999999999983 557889999999999999999
Q ss_pred EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 897 QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 897 ~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
++++++.|-.+.+||.+. -..+++...+|+..|.++. |-|. |.++++++.|.+|+.||+.++-+
T Consensus 164 ~l~tcSsDl~~~LWd~~~------------~~~c~ks~~gh~h~vS~V~-f~P~---gd~ilS~srD~tik~We~~tg~c 227 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDT------------FFRCIKSLIGHEHGVSSVF-FLPL---GDHILSCSRDNTIKAWECDTGYC 227 (406)
T ss_pred EEEecCCccchhheeHHH------------HHHHHHHhcCcccceeeEE-EEec---CCeeeecccccceeEEeccccee
Confidence 999999999999999981 1235777788999999998 9998 67999999999999999999999
Q ss_pred ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc------ccCCC
Q 000861 977 TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA------VSTTA 1050 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~------~~~~~ 1050 (1249)
+.++ ++|...|..+..+.||..+++++.|.+|++|-+.++.+...++ .|+.+|.+++| .|..... +....
T Consensus 228 v~t~--~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~w-ap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 228 VKTF--PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAW-APESSYPSISEATGSTNG 303 (406)
T ss_pred EEec--cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEe-cccccCcchhhccCCCCC
Confidence 9988 5688899999999999999999999999999999998888776 58999999999 7754421 12224
Q ss_pred CCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCC
Q 000861 1051 RPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLG 1130 (1249)
Q Consensus 1051 ~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~ 1130 (1249)
++++.+++.|++|++||+.+|.|+-++.++. .+
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-----------------------------------------------nw 336 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-----------------------------------------------NW 336 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEeccc-----------------------------------------------ce
Confidence 5689999999999999999999999888543 39
Q ss_pred eEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHh
Q 000861 1131 IRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLA 1209 (1249)
Q Consensus 1131 V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~ 1209 (1249)
|+.++|+|.| ||+++.+|+++|+||+++.++...+.
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~------------------------------------------- 373 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE------------------------------------------- 373 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-------------------------------------------
Confidence 9999999999 99999999999999999887755442
Q ss_pred hhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1210 AAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1210 ~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.|..-|++++ |+.+..+++||+-|.++|+|.
T Consensus 374 --------ah~hfvt~lD-fh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 --------AHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------CCcceeEEEe-cCCCCceEEeccccceeeeee
Confidence 5778899999 888889999999999999994
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.3e-32 Score=288.31 Aligned_cols=304 Identities=20% Similarity=0.287 Sum_probs=258.3
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
..-|.+.=++.+.+.||.+.|.|+++.|.+++|+||+.|++++|||+.++. ...++.+|-..|..+++++-..|
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~------LkltltGhi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ------LKLTLTGHIETVRGVAVSKRHPY 207 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe------EEEeecchhheeeeeeecccCce
Confidence 446887778889999999999999999999999999999999999999997 57799999999999999999999
Q ss_pred EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 898 Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
+++++.|+.|+.||++ ..+ .++.+.+|-..|.|+. .+|. -+.|++|+.|.++++||+|+...+
T Consensus 208 lFs~gedk~VKCwDLe-----~nk--------vIR~YhGHlS~V~~L~-lhPT---ldvl~t~grDst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLE-----YNK--------VIRHYHGHLSGVYCLD-LHPT---LDVLVTGGRDSTIRVWDIRTRASV 270 (460)
T ss_pred EEEecCCCeeEEEech-----hhh--------hHHHhccccceeEEEe-cccc---ceeEEecCCcceEEEeeecccceE
Confidence 9999999999999999 222 4888899999999999 8887 569999999999999999999988
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
..+ .+|...|.++.+.|-...+++|+.|++|++||++.|+...++.+ |...+.+++. +|... .++ .
T Consensus 271 ~~l--~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~l-hP~e~---------~fA-S 336 (460)
T KOG0285|consen 271 HVL--SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCL-HPKEN---------LFA-S 336 (460)
T ss_pred EEe--cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-ccceeeEEec-CCchh---------hhh-c
Confidence 888 56999999999999888999999999999999999999888774 8889999999 99876 444 4
Q ss_pred ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec
Q 000861 1058 AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL 1137 (1249)
Q Consensus 1058 s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 1137 (1249)
+.-..|+-|++..|...+.+.++ ..-|++++..
T Consensus 337 as~dnik~w~~p~g~f~~nlsgh-----------------------------------------------~~iintl~~n 369 (460)
T KOG0285|consen 337 ASPDNIKQWKLPEGEFLQNLSGH-----------------------------------------------NAIINTLSVN 369 (460)
T ss_pred cCCccceeccCCccchhhccccc-----------------------------------------------cceeeeeeec
Confidence 44556999999998876665432 2268899999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccC
Q 000861 1138 PGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAG 1217 (1249)
Q Consensus 1138 pdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 1217 (1249)
.||++++|++.|.|.+||.+++-..+...... +. ..+
T Consensus 370 sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v---------------------qp---------------------GSl- 406 (460)
T KOG0285|consen 370 SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV---------------------QP---------------------GSL- 406 (460)
T ss_pred cCceEEEcCCceEEEEEecCcCcccccccccc---------------------cC---------------------Ccc-
Confidence 99999999999999999999876533321110 00 000
Q ss_pred CcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1218 CHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1218 ~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.-...|.+.+ |+..|..|+||..|.+|++|+
T Consensus 407 ~sEagI~as~-fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 407 ESEAGIFASC-FDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccccceeEEe-ecccCceEEeccCCcceEEEe
Confidence 1245688888 888999999999999999995
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-31 Score=278.91 Aligned_cols=273 Identities=22% Similarity=0.355 Sum_probs=226.1
Q ss_pred ccccCCCCCccC------CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCC
Q 000861 811 VRTSSIPDSGWR------PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884 (1249)
Q Consensus 811 ~~s~~~~~~~W~------~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~ 884 (1249)
+.+.|...-+|+ ..|..++.|+||...|+.++.++||++++++|.||++++||+.+++ +...+.+|..
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~------~t~~f~GH~~ 106 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE------STRRFVGHTK 106 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc------EEEEEEecCC
Confidence 333355666776 3488999999999999999999999999999999999999999987 5678999999
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEEECC
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYSTQN 963 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sgs~d 963 (1249)
.|.+++|++|.+.+++|+.|.+|.+|++- |.+ ...... .+.+.|.|+. |+|+. +..++++++.|
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~------g~c-------k~t~~~~~~~~WVscvr-fsP~~-~~p~Ivs~s~D 171 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL------GVC-------KYTIHEDSHREWVSCVR-FSPNE-SNPIIVSASWD 171 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeec------ccE-------EEEEecCCCcCcEEEEE-EcCCC-CCcEEEEccCC
Confidence 99999999999999999999999999998 332 111111 1367899998 99984 35699999999
Q ss_pred CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 964 CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 964 g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
++|++||+++-+....+ .+|.+.++.++++|||...++|+.||.+.+||++.++.+.++. +...|.+++| +|+.-
T Consensus 172 ktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~f-spnry 246 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCF-SPNRY 246 (315)
T ss_pred ceEEEEccCCcchhhcc--ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEe-cCCce
Confidence 99999999999887777 6799999999999999999999999999999999999988864 7789999999 88764
Q ss_pred CcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCC
Q 000861 1044 AAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNE 1123 (1249)
Q Consensus 1044 ~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~ 1123 (1249)
.+++..+..|+|||++++.++..++..... + .
T Consensus 247 ----------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g--------------~------------------------s 278 (315)
T KOG0279|consen 247 ----------WLCAATATSIKIWDLESKAVVEELKLDGIG--------------P------------------------S 278 (315)
T ss_pred ----------eEeeccCCceEEEeccchhhhhhccccccc--------------c------------------------c
Confidence 444555556999999999988877631110 0 0
Q ss_pred CCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1124 PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1124 ~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
.........+++|++|| .|++|-.|+.||+|.+.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 01112256788999999 99999999999999874
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-30 Score=272.38 Aligned_cols=303 Identities=19% Similarity=0.273 Sum_probs=249.3
Q ss_pred cEEEEeccccCceeEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD 904 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D 904 (1249)
.+..+|++|++.|+.++..+.+ ..+++++.|.++.+|++...... .-.+...+.+|+..|..+..+++|++.++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-cCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3567899999999999999874 58999999999999998865321 112466889999999999999999999999999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
+++++||+. .| ...+.+.+|...|.+++ |++| .+.+++|+.|.+|++|+.... +..++....
T Consensus 85 ~~lrlWDl~-----~g--------~~t~~f~GH~~dVlsva-~s~d---n~qivSGSrDkTiklwnt~g~-ck~t~~~~~ 146 (315)
T KOG0279|consen 85 GTLRLWDLA-----TG--------ESTRRFVGHTKDVLSVA-FSTD---NRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS 146 (315)
T ss_pred ceEEEEEec-----CC--------cEEEEEEecCCceEEEE-ecCC---CceeecCCCcceeeeeeeccc-EEEEEecCC
Confidence 999999999 22 24677889999999999 9999 679999999999999998654 445554444
Q ss_pred CCCceEEEEEcCC--CCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe
Q 000861 985 EEGYVSSLVTGPC--GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE 1062 (1249)
Q Consensus 985 h~~~I~sl~~spd--g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~ 1062 (1249)
+.+.|+|++|+|+ ..++++++.|++|++||+++.+....+. +|.+.++.+++ +|||. +.++|+.||+
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~v-SpDGs---------lcasGgkdg~ 215 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTV-SPDGS---------LCASGGKDGE 215 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEE-CCCCC---------EEecCCCCce
Confidence 5889999999998 6899999999999999999888887764 79999999999 99998 8888889999
Q ss_pred EEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeE
Q 000861 1063 VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDL 1142 (1249)
Q Consensus 1063 I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L 1142 (1249)
+.+||+..+++.+.+.. ...|.+++|+|+.+.
T Consensus 216 ~~LwdL~~~k~lysl~a------------------------------------------------~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSLEA------------------------------------------------FDIVNSLCFSPNRYW 247 (315)
T ss_pred EEEEEccCCceeEeccC------------------------------------------------CCeEeeEEecCCcee
Confidence 99999999998776652 127999999999966
Q ss_pred EEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccc
Q 000861 1143 LTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDS 1222 (1249)
Q Consensus 1143 ~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~ 1222 (1249)
+++..+..|+|||+.+...+..+.-.. .++ ..+.-.-.
T Consensus 248 L~~at~~sIkIwdl~~~~~v~~l~~d~---~g~---------------------------------------s~~~~~~~ 285 (315)
T KOG0279|consen 248 LCAATATSIKIWDLESKAVVEELKLDG---IGP---------------------------------------SSKAGDPI 285 (315)
T ss_pred EeeccCCceEEEeccchhhhhhccccc---ccc---------------------------------------ccccCCcE
Confidence 666677789999999887765553111 000 01112233
Q ss_pred eeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1223 ILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1223 I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
..+++ |+++|..|++|..||.|++|.
T Consensus 286 clsla-ws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 286 CLSLA-WSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEEEE-EcCCCcEEEeeecCCcEEEEE
Confidence 56788 999999999999999999994
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1.7e-30 Score=265.97 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=238.4
Q ss_pred CccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCce
Q 000861 808 PSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRA 886 (1249)
Q Consensus 808 ~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V 886 (1249)
.+++.++|.+++.|. .+|.+..+++-..+.|+.+...||+++||+|+. ..||+||+++.... +..+|.+|...|
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~----Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN----PVATFEGHTKNV 86 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC----ceeEEeccCCce
Confidence 356777899999999 799999999977789999999999999999887 58999999998753 678999999999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeE
Q 000861 887 LCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGI 966 (1249)
Q Consensus 887 ~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I 966 (1249)
+++.|..+|+.+++||.||+++|||++. ...-|.++ +..+|.++. .+|+ ...|++|+.+|.|
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~-------------~~~qR~~~-~~spVn~vv-lhpn---QteLis~dqsg~i 148 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRS-------------LSCQRNYQ-HNSPVNTVV-LHPN---QTELISGDQSGNI 148 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccC-------------cccchhcc-CCCCcceEE-ecCC---cceEEeecCCCcE
Confidence 9999999999999999999999999981 11223333 568999998 9998 6799999999999
Q ss_pred EEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC------CcccccccCCCCCeeEEEEEcC
Q 000861 967 HLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL------VPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 967 ~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~------~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
++||+++..+...+- +.....|.++.+.|||..++.+...|..++|++-.. +++..++ .|.+-|.++.+ +|
T Consensus 149 rvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~l-SP 225 (311)
T KOG0315|consen 149 RVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLL-SP 225 (311)
T ss_pred EEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEE-CC
Confidence 999999887765553 345678999999999999999999999999998653 3445554 48888999999 99
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECCCC-ceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAENG-SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg-~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~ 1119 (1249)
+++ +|++++.|.+++||+.++. +....+.
T Consensus 226 d~k---------~lat~ssdktv~iwn~~~~~kle~~l~----------------------------------------- 255 (311)
T KOG0315|consen 226 DVK---------YLATCSSDKTVKIWNTDDFFKLELVLT----------------------------------------- 255 (311)
T ss_pred CCc---------EEEeecCCceEEEEecCCceeeEEEee-----------------------------------------
Confidence 998 9999999999999999876 2222222
Q ss_pred ccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCC
Q 000861 1120 ELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPN 1169 (1249)
Q Consensus 1120 ~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~ 1169 (1249)
+|...++.++||.|| +|+||+.|+.+|+||+..++..+...|+.
T Consensus 256 ------gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 256 ------GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ------cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 233489999999999 99999999999999999999988888775
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1.9e-30 Score=265.69 Aligned_cols=275 Identities=15% Similarity=0.233 Sum_probs=231.4
Q ss_pred CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccC
Q 000861 848 SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSG 927 (1249)
Q Consensus 848 ~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~ 927 (1249)
-+|+|+|+|.+||+|...+|. +..++....+.|..+...|+++.||+|+. -.|++||+. . + .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~-S----~------n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN-S----N------N 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCe------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc-C----C------C
Confidence 489999999999999999997 56677777889999999999999999876 569999998 1 1 1
Q ss_pred ccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC
Q 000861 928 ISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR 1007 (1249)
Q Consensus 928 ~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d 1007 (1249)
..++.++++|...|+.+. |..+ |+.+++|+.||+++|||+|...+...++ +..+|++++.+|+...|++|..+
T Consensus 73 p~Pv~t~e~h~kNVtaVg-F~~d---grWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVG-FQCD---GRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred CCceeEEeccCCceEEEE-Eeec---CeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCC
Confidence 236889999999999999 9999 8999999999999999999977766664 46899999999999999999999
Q ss_pred CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCC
Q 000861 1008 GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTE 1087 (1249)
Q Consensus 1008 G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~ 1087 (1249)
|.|++||++...+...+......+|.++.. .|+|. +++++...|..++|++-+......+.
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v-~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~--------- 206 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTV-MPDGS---------MLAAANNKGNCYVWRLLNHQTASELE--------- 206 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEE-cCCCc---------EEEEecCCccEEEEEccCCCccccce---------
Confidence 999999999887776665556678999999 99998 88888889999999997643222222
Q ss_pred cccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEe
Q 000861 1088 MSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1088 i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
.+...+.|...+..+.+|||+ +|+|+|.|.+++||+.++. . .+
T Consensus 207 --------------------------------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~--kl- 250 (311)
T KOG0315|consen 207 --------------------------------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F--KL- 250 (311)
T ss_pred --------------------------------EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e--ee-
Confidence 111224556688999999999 9999999999999999865 1 00
Q ss_pred CCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEE
Q 000861 1167 GPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIK 1246 (1249)
Q Consensus 1167 g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~Ik 1246 (1249)
...+.+|...+++++ ||.+|+||+||+.|++++
T Consensus 251 ----------------------------------------------e~~l~gh~rWvWdc~-FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 251 ----------------------------------------------ELVLTGHQRWVWDCA-FSADGEYLVTASSDHTAR 283 (311)
T ss_pred ----------------------------------------------EEEeecCCceEEeee-eccCccEEEecCCCCcee
Confidence 012448999999999 999999999999999999
Q ss_pred EcC
Q 000861 1247 VWK 1249 (1249)
Q Consensus 1247 VWd 1249 (1249)
+|+
T Consensus 284 lW~ 286 (311)
T KOG0315|consen 284 LWD 286 (311)
T ss_pred ecc
Confidence 996
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=270.34 Aligned_cols=291 Identities=18% Similarity=0.242 Sum_probs=251.9
Q ss_pred ccccccccccCCCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECC
Q 000861 787 TAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR 865 (1249)
Q Consensus 787 ~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~ 865 (1249)
++++|...+. ....++|...+.+.+.|...-+|+ -++.-++-+.-....|..++|+|.|+++|.|+-|+...||++.
T Consensus 50 ~LkGH~~Ki~--~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 50 TLKGHLNKIY--AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred Eeccccccee--eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 4455555443 667888999999988888888999 6777778888888999999999999999999999999999999
Q ss_pred CCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEE
Q 000861 866 KLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLV 945 (1249)
Q Consensus 866 ~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~ 945 (1249)
+.+.....+....+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++ +|+ .+..+.+|.+.|.++.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-----~g~--------~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-----TGQ--------QTQVFHGHTGDVMSLS 193 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-----cce--------EEEEecCCcccEEEEe
Confidence 764444444556789999999999999855 78899999999999999 233 4777889999999999
Q ss_pred EecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccc
Q 000861 946 NYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 946 ~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~ 1025 (1249)
+.|.. ++.+++|+.|+..++||+|.+.+.+++ ++|.+.|.+++|.|+|.-+++|+.|++.++||+|..+.+..+.
T Consensus 194 -l~p~~--~ntFvSg~cD~~aklWD~R~~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 194 -LSPSD--GNTFVSGGCDKSAKLWDVRSGQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred -cCCCC--CCeEEecccccceeeeeccCcceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 99943 779999999999999999999999988 6699999999999999999999999999999999988888776
Q ss_pred cC-CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCC
Q 000861 1026 YS-QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNP 1104 (1249)
Q Consensus 1026 ~~-~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~ 1104 (1249)
+. ...+|++++| +..|+ ++++|..|..+.+||.-.++....+.+|
T Consensus 269 ~~~~~~gitSv~F-S~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GH------------------------ 314 (343)
T KOG0286|consen 269 HDSIICGITSVAF-SKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGH------------------------ 314 (343)
T ss_pred cCcccCCceeEEE-ccccc---------EEEeeecCCceeEeeccccceEEEeecc------------------------
Confidence 43 3468999999 88888 9999999999999999888877777643
Q ss_pred CccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1105 KTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1105 s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
.+.|.|+..+||| .++||++|.++|+|.
T Consensus 315 -----------------------eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 -----------------------ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------------CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3389999999999 999999999999994
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.3e-31 Score=304.60 Aligned_cols=407 Identities=17% Similarity=0.213 Sum_probs=307.1
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEecc-ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQE-HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~-H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
+....||+..++......-.++|. ++|+++..++. |.+||..++|+|.|.++++|+.||.|+|||+..+. +.
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~------~t 140 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY------CT 140 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE------EE
Confidence 456677777777666556689999 99999999998 99999999999999999999999999999999887 57
Q ss_pred eEeeccCCceEEEEEecCCC--EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc
Q 000861 877 LTYHLEGSRALCTMMLRHSA--QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg~--~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
..+.+|++.|.++.|+|+-. .|++|..|+++++||+. .. ..++..+..|.+.|+++. |.++ +
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~-~~-----------~tcl~~~~~H~S~vtsL~-~~~d---~ 204 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN-DK-----------RTCLHTMILHKSAVTSLA-FSED---S 204 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc-cC-----------chHHHHHHhhhhheeeee-eccC---C
Confidence 78999999999999999654 58899999999999998 11 115677888999999999 9999 7
Q ss_pred cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCC-----CCEEEEEecCCcEEEEeCCCCCccccccc---
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC-----GNWFVSGSSRGVLTLWDLRFLVPVNSWQY--- 1026 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd-----g~~L~sgs~dG~I~lWDlr~~~~l~s~~~--- 1026 (1249)
..+++++.|..|.+||+.+.+...+++. ...+-++.+-++ |.++++.+.+|.+++||...+.++.....
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~---ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~ 281 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPL---YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS 281 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheech---hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc
Confidence 8999999999999999977776666643 556677777666 56888989999999998865443221100
Q ss_pred ---------------------------------------CCCCCeeEEEEEcCCCCCc----------------------
Q 000861 1027 ---------------------------------------SQVCPIEKMCLFVPPPNAA---------------------- 1045 (1249)
Q Consensus 1027 ---------------------------------------~~~~~I~~l~~~sp~g~~~---------------------- 1045 (1249)
|....|..|+|..|+.+..
T Consensus 282 ~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii 361 (775)
T KOG0319|consen 282 EEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQII 361 (775)
T ss_pred hhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEE
Confidence 2223344444422211110
Q ss_pred ---------c-cCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccc
Q 000861 1046 ---------V-STTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQK 1115 (1249)
Q Consensus 1046 ---------~-~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~ 1115 (1249)
. ....+.++++|+.|+++++|.++++.+..........+...+.++..+-..+...++++.|+..
T Consensus 362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl----- 436 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL----- 436 (775)
T ss_pred eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE-----
Confidence 0 0123458999999999999988655443322222222233455555543333334444444443
Q ss_pred ccccccCC---------------CCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcce
Q 000861 1116 YRVDELNE---------------PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFY 1179 (1249)
Q Consensus 1116 ~~~~~~~~---------------~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y 1179 (1249)
++|.+.. ...|...|+|++++|+. .++|||.|.+.++|+++......++.||.
T Consensus 437 -K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~---------- 505 (775)
T KOG0319|consen 437 -KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT---------- 505 (775)
T ss_pred -EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc----------
Confidence 3444332 24677899999999999 99999999999999999988889999987
Q ss_pred eeccCCceEEeeccccCCc-cchhhHHHHHhhh--cccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1180 ETRSSSGVQVVQERKRQPL-TSKLTAKAVLAAA--ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1180 ~~~~~~~v~~~~e~~~~~~-~~~~~~~~~~~~~--~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+.++++.|++..+..++ +.+.+.+.|.... ...++.||...|.-+. |-.+|+.|+||+.||.||+|+
T Consensus 506 --RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~-F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 506 --RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS-FIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred --cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee-eeeCCcEEEeccCCCcEEEEe
Confidence 56778999988776666 7788888876543 3458899999999999 667899999999999999996
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=299.91 Aligned_cols=408 Identities=15% Similarity=0.172 Sum_probs=308.2
Q ss_pred CCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCC--EEEEEECCCcEEEEECCCCcccccccee
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHS--FFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~--~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
..|+|.|..+++++.+...++|+ ..+.+.++|+||.+.|.++.|+|+-. .|++|..|++|++||+.+... +.
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-----cl 185 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-----CL 185 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-----HH
Confidence 56788887777777788899999 78899999999999999999999764 689999999999999997653 35
Q ss_pred eEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCC--------------------------------Cc---
Q 000861 877 LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGL--------------------------------GN--- 921 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~--------------------------------g~--- 921 (1249)
.+...|.+.|+++.|.+|+..+++++.|..+.+||+.. .+.. |.
T Consensus 186 ~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 186 HTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred HHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh-hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 67788999999999999999999999999999999853 1100 00
Q ss_pred -------c---cccc--------------------------------CccceeeecCCCCcEEEEEEecCCCCCccEEEE
Q 000861 922 -------V---EKYS--------------------------------GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 922 -------~---~~~~--------------------------------~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s 959 (1249)
+ .+.. .....+.+-+..+.|.+++.+.|+ .+++++
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e---~~~laV 341 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE---ESHLAV 341 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc---cceEEE
Confidence 0 0000 001122333556778888856666 679999
Q ss_pred EECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC----cccccccCCCCCeeEE
Q 000861 960 STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV----PVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~----~l~s~~~~~~~~I~~l 1035 (1249)
+++.+.+++|+..++.+. .+ ++|...|.++....+|.+|++|+.|.++++|.+..+. ++.. -.+|...|.++
T Consensus 342 ATNs~~lr~y~~~~~~c~-ii--~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~-~~gH~~svgav 417 (775)
T KOG0319|consen 342 ATNSPELRLYTLPTSYCQ-II--PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ-ANGHTNSVGAV 417 (775)
T ss_pred EeCCCceEEEecCCCceE-EE--eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh-hccccccccee
Confidence 999999999999988775 34 6799999999977788999999999999999884433 2333 24699999999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE---EE--ecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ---VL--RTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~---~l--~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
++ +..+. +++++++.|+++++|++...+... .+ +....-++..+++++.+|+...- ++++.|.
T Consensus 418 a~-~~~~a--------sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi-AT~SqDk-- 485 (775)
T KOG0319|consen 418 AG-SKLGA--------SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI-ATGSQDK-- 485 (775)
T ss_pred ee-cccCc--------cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE-Eeccccc--
Confidence 99 55553 589999999999999998622211 11 11111234567777777632221 1222222
Q ss_pred cccccccccccCC------CCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeecc
Q 000861 1111 NVNQKYRVDELNE------PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRS 1183 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~------~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~ 1183 (1249)
+.++|.+.. ..+|..+|+|+.|++.. .++|+|.|++|+||.+.+.++.+++.||. ..
T Consensus 486 ----taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~------------~a 549 (775)
T KOG0319|consen 486 ----TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT------------SA 549 (775)
T ss_pred ----ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc------------ce
Confidence 334555543 37899999999999988 99999999999999999999999999986 23
Q ss_pred CCceEEeeccccCCc-cchhhHHHHHhhhc--ccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1184 SSGVQVVQERKRQPL-TSKLTAKAVLAAAA--TDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1184 ~~~v~~~~e~~~~~~-~~~~~~~~~~~~~~--~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+..+.|...+....+ .+++..+.|..... ..++.+|+|.|++++ .++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~-~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS-VSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe-ecCccceeEecCCCeEEEEee
Confidence 445566666555544 56666666655443 447889999999999 899999999999999999995
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.8e-29 Score=279.51 Aligned_cols=287 Identities=24% Similarity=0.406 Sum_probs=243.3
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeE
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGII 907 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I 907 (1249)
+++|++|.++|++++|+|+++++++|+.||.+++||..+.+ ....+..|...+.++.|+++++.+++++.||.|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 46788999999999999999999999999999999998775 245677888889999999999999999999999
Q ss_pred EEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC
Q 000861 908 HMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
++|++. . + ..+..+..|...+.++. |+++ +.++++++.+|.|.+||+++++....+. .|.+
T Consensus 76 ~i~~~~-~----~--------~~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 136 (289)
T cd00200 76 RLWDLE-T----G--------ECVRTLTGHTSYVSSVA-FSPD---GRILSSSSRDKTIKVWDVETGKCLTTLR--GHTD 136 (289)
T ss_pred EEEEcC-c----c--------cceEEEeccCCcEEEEE-EcCC---CCEEEEecCCCeEEEEECCCcEEEEEec--cCCC
Confidence 999998 1 1 13455667888899998 9988 5688888889999999999888777664 5788
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 988 YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 988 ~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
.+++++|+|++.++++++.+|.|++||++.++.+..+. .+...|.++.| +|++. .+++++.++.+++||
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~-~~~~~---------~l~~~~~~~~i~i~d 205 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAF-SPDGE---------KLLSSSSDGTIKLWD 205 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEE-CCCcC---------EEEEecCCCcEEEEE
Confidence 99999999999999998889999999999888888776 57778999999 99987 788898899999999
Q ss_pred CCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe
Q 000861 1068 AENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG 1146 (1249)
Q Consensus 1068 l~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs 1146 (1249)
+.+++....+.. +...+.++.|++++ ++++++
T Consensus 206 ~~~~~~~~~~~~-----------------------------------------------~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 206 LSTGKCLGTLRG-----------------------------------------------HENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred CCCCceecchhh-----------------------------------------------cCCceEEEEEcCCCcEEEEEc
Confidence 988765554431 11278899999988 777777
Q ss_pred CCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEE
Q 000861 1147 TDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSL 1226 (1249)
Q Consensus 1147 ~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~l 1226 (1249)
.||.|++||+.+++....+. +|...|.++
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~---------------------------------------------------~~~~~i~~~ 267 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLS---------------------------------------------------GHTNSVTSL 267 (289)
T ss_pred CCCcEEEEEcCCceeEEEcc---------------------------------------------------ccCCcEEEE
Confidence 79999999998755433332 477789999
Q ss_pred EeeecCCCEEEEEeCCCeEEEcC
Q 000861 1227 GSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1227 a~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+ |++++++|++++.||.|++||
T Consensus 268 ~-~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 A-WSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred E-ECCCCCEEEEecCCCeEEecC
Confidence 9 999999999999999999997
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=266.80 Aligned_cols=291 Identities=16% Similarity=0.247 Sum_probs=245.1
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI 906 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~ 906 (1249)
++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++...+++ ..+.++|++.|..+.|.+|++.+++++.|.+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-----~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-----FWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-----eeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 45568899999999999999999999999999999997765542 4567799999999999999999999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
++.||++ +|+ .++..++|.+.+..+. -..-+ -.++.+++.||++++||+|+...+.+++. .
T Consensus 114 v~~wD~~-----tG~--------~~rk~k~h~~~vNs~~-p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---k 174 (338)
T KOG0265|consen 114 VRGWDAE-----TGK--------RIRKHKGHTSFVNSLD-PSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFEN---K 174 (338)
T ss_pred EEEEecc-----cce--------eeehhccccceeeecC-ccccC--CeEEEecCCCceEEEEeecccchhhcccc---c
Confidence 9999999 343 3677788888887776 33332 34788899999999999999988877753 6
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
..+++++|...+..+.+|+-|+.|++||+|.+.....+. +|..+|+.+.. +|+|. ++.+-+.|+++++|
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsl-s~~gs---------~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSL-SRYGS---------FLLSNSMDNTVRVW 243 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEe-ccCCC---------ccccccccceEEEE
Confidence 789999999999999999999999999999999998865 79999999999 99998 89999999999999
Q ss_pred ECCC----CceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-e
Q 000861 1067 NAEN----GSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-D 1141 (1249)
Q Consensus 1067 Dl~t----g~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~ 1141 (1249)
|++. .+|+..+.++.-.. ......++|+|++ .
T Consensus 244 d~rp~~p~~R~v~if~g~~hnf-------------------------------------------eknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNF-------------------------------------------EKNLLKCSWSPNGTK 280 (338)
T ss_pred EecccCCCCceEEEeecchhhh-------------------------------------------hhhcceeeccCCCCc
Confidence 9974 34456665322100 0145678899999 8
Q ss_pred EEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCccc
Q 000861 1142 LLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRD 1221 (1249)
Q Consensus 1142 L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d 1221 (1249)
+-+|+.|+.+++||.......+.+. ||.+
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklp---------------------------------------------------Gh~g 309 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLP---------------------------------------------------GHYG 309 (338)
T ss_pred cccccccceEEEeecccccEEEEcC---------------------------------------------------Ccce
Confidence 8899999999999997765555443 6889
Q ss_pred ceeEEEeeecCCCEEEEEeCCCeEEE
Q 000861 1222 SILSLGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1222 ~I~~la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
.|++++ |+|...+|.+++.|.+|.+
T Consensus 310 svn~~~-Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 SVNEVD-FHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eEEEee-ecCCCcEEEEeccCceeEe
Confidence 999999 9999999999999999976
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=283.37 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=242.0
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
-+.+|+.+.|.|+|+.|+||+..|.+.+|+..... .......|...|.++.|+++|.++++|+.+|.|++|+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 45689999999999999999999999999985432 233456799999999999999999999999999999987
Q ss_pred ccccCCCccccccCccceeeecCCC-CcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 914 HISRGLGNVEKYSGISDIKKKDTKE-GAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~~h~-~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
. ..++.+..|. ..|.+++ |+|+ ...+++++.||+|+|||.+..+....+ .+|.-.|+|+
T Consensus 169 -m-------------nnVk~~~ahh~eaIRdla-fSpn---DskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksv 228 (464)
T KOG0284|consen 169 -M-------------NNVKIIQAHHAEAIRDLA-FSPN---DSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSV 228 (464)
T ss_pred -h-------------hhhHHhhHhhhhhhheec-cCCC---CceeEEecCCCeEEEEeccCCchhhee--ccCCCCccee
Confidence 1 1245555555 7899999 9997 569999999999999999998887777 6699999999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
.|+|....+++|+.|..|++||.|++.++.++. +|...|..+.| .|+++ +|++++.|..++++|+++.+
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f-~~n~N---------~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKF-NPNGN---------WLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEE-cCCCC---------eeEEccCCceEEEEehhHhH
Confidence 999999999999999999999999999999975 59999999999 99988 99999999999999999777
Q ss_pred eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCc
Q 000861 1073 CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLK 1150 (1249)
Q Consensus 1073 ~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~ 1150 (1249)
.+.+++++. ..|+++.|+|-. .|.+||.||.
T Consensus 298 El~~~r~Hk-----------------------------------------------kdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 298 ELFTYRGHK-----------------------------------------------KDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred HHHHhhcch-----------------------------------------------hhheeeccccccccceeeccCCCc
Confidence 766666433 378889998866 8999999999
Q ss_pred EEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeee
Q 000861 1151 IRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVK 1230 (1249)
Q Consensus 1151 IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s 1230 (1249)
|..|.+...+..-. ...+|...|++++ |+
T Consensus 331 vvh~~v~~~~p~~~--------------------------------------------------i~~AHd~~iwsl~-~h 359 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGE--------------------------------------------------IPPAHDGEIWSLA-YH 359 (464)
T ss_pred eEEEeccccccccC--------------------------------------------------CCcccccceeeee-cc
Confidence 99999873222111 1237999999999 99
Q ss_pred cCCCEEEEEeCCCeEEEcC
Q 000861 1231 LNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1231 ~dg~~LaSgs~DG~IkVWd 1249 (1249)
|-|.+|+||+.|.++++|.
T Consensus 360 PlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccceeEeecCCCcceeeec
Confidence 9999999999999999993
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6e-29 Score=267.51 Aligned_cols=334 Identities=15% Similarity=0.202 Sum_probs=268.0
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI 906 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~ 906 (1249)
-+.+|.+|+++|.+++.+|+.++++||+.|..-.+|+..+++. ...+.+|...|+++.|+.+|.+||+|+.+|.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~------~~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF------AGELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc------eeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 3678999999999999999999999999999999999999983 5678899999999999999999999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
|+||.+. ++.. ...+...-+.+.-+. |+|. +.+|++|+.||.+.+|.+..+...+.+ .+|.
T Consensus 130 v~v~~~s-----tg~~--------~~~~~~e~~dieWl~-WHp~---a~illAG~~DGsvWmw~ip~~~~~kv~--~Gh~ 190 (399)
T KOG0296|consen 130 VLVFKVS-----TGGE--------QWKLDQEVEDIEWLK-WHPR---AHILLAGSTDGSVWMWQIPSQALCKVM--SGHN 190 (399)
T ss_pred EEEEEcc-----cCce--------EEEeecccCceEEEE-eccc---ccEEEeecCCCcEEEEECCCcceeeEe--cCCC
Confidence 9999998 2221 233333445677787 9998 789999999999999999987666666 5699
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
.++++-.|.|+|+.+++|..||+|++||+.++.++............++.+ ...+. .++.|..++.+++-
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~-~~~~~---------~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL-NLAGS---------TLTKGNSEGVACGV 260 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc-ccccc---------eeEeccCCccEEEE
Confidence 999999999999999999999999999999999998876544556667777 66665 78888889999999
Q ss_pred ECCCCceeEEEecccC----CCCCC---cccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCC
Q 000861 1067 NAENGSCHQVLRTANY----DGDTE---MSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG 1139 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~----~~~~~---i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd 1139 (1249)
+..+|+.+........ ..+.. +..++++..-|. .+.+.-||+.. .+++..+.+.....|..+|..+.|.++
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL-~A~G~vdG~i~-iyD~a~~~~R~~c~he~~V~~l~w~~t 338 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL-AACGSVDGTIA-IYDLAASTLRHICEHEDGVTKLKWLNT 338 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccch-hhcccccceEE-EEecccchhheeccCCCceEEEEEcCc
Confidence 9988888777763111 11122 333333322122 22334455433 244445555566778889999999996
Q ss_pred CeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCc
Q 000861 1140 GDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCH 1219 (1249)
Q Consensus 1140 g~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H 1219 (1249)
.+|+|++.||.||.||..++.....+. ||
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~---------------------------------------------------GH 367 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYT---------------------------------------------------GH 367 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEe---------------------------------------------------cC
Confidence 699999999999999999998866654 68
Q ss_pred ccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1220 RDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1220 ~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
...|.+++ ++|+.++++|+|.|++.+||+
T Consensus 368 ~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 368 QMGILDFA-LSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeEEE-EcCCCcEEEEecCCCeEEEEe
Confidence 89999999 899999999999999999985
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.8e-29 Score=287.33 Aligned_cols=363 Identities=15% Similarity=0.194 Sum_probs=278.7
Q ss_pred CCCCCCCCCCCccccccCCCCCccC-CC--------CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 000861 798 ASSPADLTGLPSFVRTSSIPDSGWR-PR--------GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE 868 (1249)
Q Consensus 798 ~~~~~s~~G~~~~~~s~~~~~~~W~-~~--------G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~ 868 (1249)
.++.|+|+|..++.+. +.-..+|+ |. -.+.+++.||-+.|+++.|+.|.++|++||.|-+++||++...+
T Consensus 100 ~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred ceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 3788999999877765 45678998 42 13567889999999999999999999999999999999998876
Q ss_pred cccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccc-----------------------cCCCcc---
Q 000861 869 KDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHIS-----------------------RGLGNV--- 922 (1249)
Q Consensus 869 ~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~-----------------------~~~g~~--- 922 (1249)
.. ....+.+|...|.+.-|..+...+.+.+.||.+.+|..+... +..++.
T Consensus 179 ~~----~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 179 NL----FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred cc----ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 42 144678999999999999999999999999999999876100 000000
Q ss_pred -------------------------------------ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC-C
Q 000861 923 -------------------------------------EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN-C 964 (1249)
Q Consensus 923 -------------------------------------~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d-g 964 (1249)
..+.....++.+......|..+. |+.. |+.++.|+.. |
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~-~N~t---GDWiA~g~~klg 330 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVS-FNST---GDWIAFGCSKLG 330 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEE-eccc---CCEEEEcCCccc
Confidence 00001112333333344556665 6665 6788888765 8
Q ss_pred eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCC
Q 000861 965 GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044 (1249)
Q Consensus 965 ~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~ 1044 (1249)
.+.+|+.++...+ ++..+|...+++++++|||+++++|+.||.|++||.+.+-|+.++. .|...|+.+.| +..|+
T Consensus 331 QLlVweWqsEsYV--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f-~~~g~- 405 (893)
T KOG0291|consen 331 QLLVWEWQSESYV--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQF-TARGN- 405 (893)
T ss_pred eEEEEEeecccee--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEE-EecCC-
Confidence 9999999887654 5557899999999999999999999999999999999999999987 49999999999 88888
Q ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc-----cccccc
Q 000861 1045 AVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN-----QKYRVD 1119 (1249)
Q Consensus 1045 ~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~-----~~~~~~ 1119 (1249)
.+++++-||+|+.||+...++.+++.... .....+++..| .|..+.. ..+.+|
T Consensus 406 --------~llssSLDGtVRAwDlkRYrNfRTft~P~---p~QfscvavD~-----------sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 406 --------VLLSSSLDGTVRAWDLKRYRNFRTFTSPE---PIQFSCVAVDP-----------SGELVCAGAQDSFEIFVW 463 (893)
T ss_pred --------EEEEeecCCeEEeeeecccceeeeecCCC---ceeeeEEEEcC-----------CCCEEEeeccceEEEEEE
Confidence 89999999999999999988877776422 12223333332 2333221 233445
Q ss_pred ccC------CCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc-cEEEeCCCCCCCCCCcceeeccCCceEEee
Q 000861 1120 ELN------EPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR-SYCICGPNLKGVGNDEFYETRSSSGVQVVQ 1191 (1249)
Q Consensus 1120 ~~~------~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~-~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~ 1191 (1249)
... ...+|.++|.+++|+|+| .|++|++|.+||+||+-.... ...+
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------------------------- 517 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-------------------------- 517 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE--------------------------
Confidence 443 347999999999999999 999999999999999864321 1111
Q ss_pred ccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1192 ERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1192 e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.+...+++++ |+|+|+-|+.+.-||.|.+||
T Consensus 518 --------------------------~i~sdvl~vs-frPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 518 --------------------------EIRSDVLAVS-FRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred --------------------------eeccceeEEE-EcCCCCeEEEEEecceEEEEE
Confidence 2556799999 999999999999999999997
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.6e-28 Score=274.24 Aligned_cols=404 Identities=14% Similarity=0.114 Sum_probs=284.3
Q ss_pred CCccccccccccCCCCCCCCCCCC-ccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEE
Q 000861 785 SGTAKGSSINVEDASSPADLTGLP-SFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVW 862 (1249)
Q Consensus 785 ~~~i~~~~~~~~~~~~~~s~~G~~-~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIW 862 (1249)
.+.+.||++.+. ++.|.|.-+. +++.+.|.....+. |.-+.-.++++|..-|+|+.|+|||.+|||++.||++.+|
T Consensus 140 vGei~GhSr~in--s~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 140 VGEITGHSRRIN--SVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred cceeeccceeEe--eeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 445566666665 6677776654 45556567777787 7778889999999999999999999999999999999999
Q ss_pred ECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCC---C
Q 000861 863 DSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKE---G 939 (1249)
Q Consensus 863 D~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~---~ 939 (1249)
|=.++++...+.. -.+|.+.|.+++|+||+..+++++.|.+++|||+. ..+ .++++.... .
T Consensus 218 DGktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs-----~~s--------lv~t~~~~~~v~d 281 (603)
T KOG0318|consen 218 DGKTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS-----TNS--------LVSTWPMGSTVED 281 (603)
T ss_pred cCCCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEee-----ccc--------eEEEeecCCchhc
Confidence 9999986433321 34799999999999999999999999999999998 222 244443321 2
Q ss_pred cEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC
Q 000861 940 AIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV 1019 (1249)
Q Consensus 940 ~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~ 1019 (1249)
.-..+. |..+ .|++.+.+|.|.+++...+.....+ .+|...|+++..++++.+|++|+.||.|.-||...+.
T Consensus 282 qqvG~l-Wqkd-----~lItVSl~G~in~ln~~d~~~~~~i--~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 282 QQVGCL-WQKD-----HLITVSLSGTINYLNPSDPSVLKVI--SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred eEEEEE-EeCC-----eEEEEEcCcEEEEecccCCChhhee--cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 334444 6655 8999999999999999999977777 5699999999999999999999999999999999888
Q ss_pred cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCC
Q 000861 1020 PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPS 1099 (1249)
Q Consensus 1020 ~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~ 1099 (1249)
.-+....+|...|.+++. +..+. +++++.|.++++.++..+.+..... ..+.. +|.
T Consensus 354 ~~~~~g~~h~nqI~~~~~-~~~~~----------~~t~g~Dd~l~~~~~~~~~~t~~~~----------~~lg~---QP~ 409 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAA-SESGE----------LFTIGWDDTLRVISLKDNGYTKSEV----------VKLGS---QPK 409 (603)
T ss_pred ccccccccccceEEEEee-cCCCc----------EEEEecCCeEEEEecccCcccccce----------eecCC---Cce
Confidence 877666679999999998 65554 8999999999999986543322110 00111 122
Q ss_pred CCCCCCcccccccc--cccccc-ccCC--CCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCC
Q 000861 1100 SRSNPKTDLRRNVN--QKYRVD-ELNE--PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGV 1173 (1249)
Q Consensus 1100 ~~~~~s~dg~~~~~--~~~~~~-~~~~--~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~ 1173 (1249)
......+++..++. .++.+- +... ..+......+++++|++ .++.||.|+.|++|.+...+......-.
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~----- 484 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL----- 484 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-----
Confidence 22222222222221 111110 0100 01122357899999999 9999999999999999876642221100
Q ss_pred CCCcceeeccCCceEEeeccccCCccc-hhhHHHHHhhh---cccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1174 GNDEFYETRSSSGVQVVQERKRQPLTS-KLTAKAVLAAA---ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1174 ~~~~~y~~~~~~~v~~~~e~~~~~~~~-~~~~~~~~~~~---~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
-+...+..+.+++++...+... ....-.+.... ......-|+..|++++ |+|+..++||||-|-+|.||.
T Consensus 485 -----~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 485 -----EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred -----cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCceEEEeccccceEEEEE
Confidence 0112345566666655443310 00000000000 1112345999999999 999999999999999999994
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.1e-28 Score=271.94 Aligned_cols=326 Identities=16% Similarity=0.185 Sum_probs=255.8
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEec---cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQ---EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~---~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
.++|+|||...++.+.|...-+++ .+|..+..|. +|++.|.+++|+||++.|+|+|.|.++||||+.+.....++.
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 578999999988888788889999 8999999999 899999999999999999999999999999998664322221
Q ss_pred -------------------------------------eeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccccc
Q 000861 875 -------------------------------------SRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISR 917 (1249)
Q Consensus 875 -------------------------------------~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~ 917 (1249)
+..++.+|...|++++.++++++|.+|+.||.|.-|+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~---- 350 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG---- 350 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC----
Confidence 334677899999999999999999999999999999998
Q ss_pred CCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccce----eeec-----------
Q 000861 918 GLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTW----TLKA----------- 982 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~----~l~~----------- 982 (1249)
.|...++. -+.|...|.++.....+ .+++++.|.++++.++..+.... .+..
T Consensus 351 -~g~~~~~~-------g~~h~nqI~~~~~~~~~-----~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 351 -SGTSDRLA-------GKGHTNQIKGMAASESG-----ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred -Cccccccc-------cccccceEEEEeecCCC-----cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 22221111 14577788888733223 78888888888888764321100 0000
Q ss_pred --------------C--------CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccc-cccCCCCCeeEEEEEc
Q 000861 983 --------------I--------PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNS-WQYSQVCPIEKMCLFV 1039 (1249)
Q Consensus 983 --------------~--------~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s-~~~~~~~~I~~l~~~s 1039 (1249)
. +-.-...+++++|++..+++|+.||.|.+|.+........ ....|.++|+.++| +
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay-S 496 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY-S 496 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE-C
Confidence 0 0122457889999999999999999999999976553322 33468999999999 9
Q ss_pred CCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccccc
Q 000861 1040 PPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1040 p~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~ 1119 (1249)
|++. ++++|...+.+.+||+.+.+.....+.
T Consensus 497 pd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~---------------------------------------- 527 (603)
T KOG0318|consen 497 PDGA---------YLAAGDASRKVVLYDVASREVKTNRWA---------------------------------------- 527 (603)
T ss_pred CCCc---------EEEEeccCCcEEEEEcccCceecceee----------------------------------------
Confidence 9998 999999999999999998765222221
Q ss_pred ccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCc
Q 000861 1120 ELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPL 1198 (1249)
Q Consensus 1120 ~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~ 1198 (1249)
-|...|.|++|+|+. .++||+-|..|.+|+++.+...-.+.
T Consensus 528 ------FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------------------------------- 569 (603)
T KOG0318|consen 528 ------FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------------------------------- 569 (603)
T ss_pred ------eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec--------------------------------
Confidence 133489999999999 99999999999999999887653322
Q ss_pred cchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1199 TSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1199 ~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.+|...|+.++ | .+...|+|+|.|..||+|.
T Consensus 570 ------------------nAH~~gVn~v~-w-lde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 570 ------------------NAHLGGVNSVA-W-LDESTVVSSGQDANIKVWN 600 (603)
T ss_pred ------------------cccccCceeEE-E-ecCceEEeccCcceeEEec
Confidence 26888899999 5 4677899999999999995
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.8e-30 Score=284.79 Aligned_cols=293 Identities=16% Similarity=0.246 Sum_probs=242.0
Q ss_pred CcEEEEeccccCceeEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC
Q 000861 825 GILVAHLQEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC 903 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~ 903 (1249)
.+++.++.||+..|+++.|.| .+.+|++|+.|+.|+||++..... +..+|.+|..+|.+++|+++|..|.+++.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~-----~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR-----CLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc-----eehhhhcchhhhhhhhccccCCeeeeeec
Confidence 467899999999999999999 889999999999999999987432 67799999999999999999999999999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCc-EEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGA-IVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~-V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~ 982 (1249)
|+.|++||++ +|.+ +..+ +.+. ++|+. |+|++ .+.+++|+.|+.|+.||+|+++.++.+.
T Consensus 279 D~~lKlwDtE-----TG~~--------~~~f--~~~~~~~cvk-f~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd- 339 (503)
T KOG0282|consen 279 DRFLKLWDTE-----TGQV--------LSRF--HLDKVPTCVK-FHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYD- 339 (503)
T ss_pred ceeeeeeccc-----cceE--------EEEE--ecCCCceeee-cCCCC--CcEEEEecCCCcEEEEeccchHHHHHHH-
Confidence 9999999999 3443 2222 3343 55666 99996 3699999999999999999999988884
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe
Q 000861 983 IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE 1062 (1249)
Q Consensus 983 ~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~ 1062 (1249)
.|-+.|..+.|-++|+.+++.+.|+.+++|+.+.+.+++.....+.....++.. +|++. ++++-+.|+.
T Consensus 340 -~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~-~P~~~---------~~~aQs~dN~ 408 (503)
T KOG0282|consen 340 -RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL-HPNGK---------WFAAQSMDNY 408 (503)
T ss_pred -hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec-CCCCC---------eehhhccCce
Confidence 488999999999999999999999999999999998887766555556778888 99998 8888899999
Q ss_pred EEEEECCCCcee---EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCC
Q 000861 1063 VSLWNAENGSCH---QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG 1139 (1249)
Q Consensus 1063 I~vWDl~tg~~~---~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd 1139 (1249)
|.++.+...-.. +.++++.. .+.-..+.||||
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~v---------------------------------------------aGys~~v~fSpD 443 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSV---------------------------------------------AGYSCQVDFSPD 443 (503)
T ss_pred EEEEecccccccCHhhhhcceec---------------------------------------------cCceeeEEEcCC
Confidence 999986533211 12222111 113457899999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCC
Q 000861 1140 G-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGC 1218 (1249)
Q Consensus 1140 g-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 1218 (1249)
| +|++|+.||.+.+||.++.+.... +++
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~---------------------------------------------------lka 472 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSK---------------------------------------------------LKA 472 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhc---------------------------------------------------ccc
Confidence 9 999999999999999987654322 347
Q ss_pred cccceeEEEeeecC-CCEEEEEeCCCeEEEcC
Q 000861 1219 HRDSILSLGSVKLN-QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1219 H~d~I~~la~~s~d-g~~LaSgs~DG~IkVWd 1249 (1249)
|...+..+. |+|- ..-+||||.||.|++|+
T Consensus 473 h~~~ci~v~-wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 473 HDQPCIGVD-WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceEEEE-ecCCCcceeEecccCceeEecC
Confidence 888999999 8886 56799999999999997
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=295.91 Aligned_cols=297 Identities=20% Similarity=0.328 Sum_probs=249.9
Q ss_pred CcEEEEeccc-cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC
Q 000861 825 GILVAHLQEH-CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC 903 (1249)
Q Consensus 825 G~lv~~L~~H-~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~ 903 (1249)
..+...+.+| ...|.++.|+++|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++|+.
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS----NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc----hhhccccccccceeeeEECCCCcEEEEecC
Confidence 3346667665 78999999999999999999999999999966552 123455789999999999999999999999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecC
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
|++|++||+.. ....++.+.+|...|++++ |+|+ ++.+++|+.|++|++||++++++...+.
T Consensus 224 D~tiriwd~~~------------~~~~~~~l~gH~~~v~~~~-f~p~---g~~i~Sgs~D~tvriWd~~~~~~~~~l~-- 285 (456)
T KOG0266|consen 224 DKTLRIWDLKD------------DGRNLKTLKGHSTYVTSVA-FSPD---GNLLVSGSDDGTVRIWDVRTGECVRKLK-- 285 (456)
T ss_pred CceEEEeeccC------------CCeEEEEecCCCCceEEEE-ecCC---CCEEEEecCCCcEEEEeccCCeEEEeee--
Confidence 99999999951 1135788999999999999 9999 6799999999999999999999988884
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC--cccccccCCCC-CeeEEEEEcCCCCCcccCCCCCEEEEEECC
Q 000861 984 PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV--PVNSWQYSQVC-PIEKMCLFVPPPNAAVSTTARPLIYVAAGC 1060 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~--~l~s~~~~~~~-~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D 1060 (1249)
+|.+.|++++|++++++|++++.||.|++||+.++. ++..+...... +++.++| +|++. ++++++.|
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f-sp~~~---------~ll~~~~d 355 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF-SPNGK---------YLLSASLD 355 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEE-CCCCc---------EEEEecCC
Confidence 599999999999999999999999999999999998 45555433333 6999999 99998 99999999
Q ss_pred CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC
Q 000861 1061 NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG 1140 (1249)
Q Consensus 1061 g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg 1140 (1249)
+.+++||+..+.+...+.++.... ..+.+...+++|
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLV--------------------------------------------RCIFSPTLSTGG 391 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcc--------------------------------------------eeEecccccCCC
Confidence 999999999999988887543310 034444556778
Q ss_pred -eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCc
Q 000861 1141 -DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCH 1219 (1249)
Q Consensus 1141 -~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H 1219 (1249)
++++|+.|+.|++||+.++.....+ .+|
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l---------------------------------------------------~~h 420 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRL---------------------------------------------------EGH 420 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhh---------------------------------------------------cCC
Confidence 9999999999999999886554433 356
Q ss_pred -ccceeEEEeeecCCCEEEEEe--CCCeEEEcC
Q 000861 1220 -RDSILSLGSVKLNQRLLISSS--RDGAIKVWK 1249 (1249)
Q Consensus 1220 -~d~I~~la~~s~dg~~LaSgs--~DG~IkVWd 1249 (1249)
...|..+. +++...++++++ .|+.|++|+
T Consensus 421 ~~~~~~~~~-~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 421 SKAAVSDLS-SHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCceeccc-cCCCcCeeeecCcCCCceEEEec
Confidence 67888898 899999999998 799999995
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.4e-28 Score=267.89 Aligned_cols=285 Identities=18% Similarity=0.263 Sum_probs=246.5
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
..|++++|+.+|.+||||+.||.++||+..... ..++..|.++|.++.|...|.+|++++.||++.+||..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-- 306 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-- 306 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh-------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc--
Confidence 579999999999999999999999999988754 45788999999999999999999999999999999997
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
.|.. ...+..|..+..++. |-.+ ..+++++.||.|+++-+...+++.++. +|++.|.++.|+
T Consensus 307 ---~g~~--------~q~f~~~s~~~lDVd-W~~~----~~F~ts~td~~i~V~kv~~~~P~~t~~--GH~g~V~alk~n 368 (524)
T KOG0273|consen 307 ---TGTV--------KQQFEFHSAPALDVD-WQSN----DEFATSSTDGCIHVCKVGEDRPVKTFI--GHHGEVNALKWN 368 (524)
T ss_pred ---CceE--------EEeeeeccCCccceE-EecC----ceEeecCCCceEEEEEecCCCcceeee--cccCceEEEEEC
Confidence 2332 344556777767777 5544 289999999999999999888888885 499999999999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
|.|..|++++.|++++||..........+. .|...|..+.| +|.|........+..+++++.|++|++||+..|.++.
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~w-sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKW-SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEee-cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence 999999999999999999998888888876 58889999999 9998755555566789999999999999999999998
Q ss_pred EEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEE
Q 000861 1076 VLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRW 1154 (1249)
Q Consensus 1076 ~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriW 1154 (1249)
+|..|. .+|.+++|+|+| ++++|+.||.|.+|
T Consensus 447 ~f~kH~-----------------------------------------------~pVysvafS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 447 TLMKHQ-----------------------------------------------EPVYSVAFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred eeccCC-----------------------------------------------CceEEEEecCCCcEEEecCCCCeeEec
Confidence 886332 289999999999 99999999999999
Q ss_pred eCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCC
Q 000861 1155 DHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQR 1234 (1249)
Q Consensus 1155 Dl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~ 1234 (1249)
++.+++..+...+ .+.|..++ |+.+|.
T Consensus 480 s~~~~~l~~s~~~----------------------------------------------------~~~Ifel~-Wn~~G~ 506 (524)
T KOG0273|consen 480 STKTGKLVKSYQG----------------------------------------------------TGGIFELC-WNAAGD 506 (524)
T ss_pred cccchheeEeecC----------------------------------------------------CCeEEEEE-EcCCCC
Confidence 9998887665532 34589999 999999
Q ss_pred EEEEEeCCCeEEEcC
Q 000861 1235 LLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1235 ~LaSgs~DG~IkVWd 1249 (1249)
.|..+-.||.++|-|
T Consensus 507 kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 507 KLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEecCCCceEEE
Confidence 999999999988743
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.5e-28 Score=271.50 Aligned_cols=297 Identities=18% Similarity=0.285 Sum_probs=241.4
Q ss_pred EEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCC----ccccccceeeEeecc----CCceEEEEEecCCCEEE
Q 000861 829 AHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKL----EKDISFRSRLTYHLE----GSRALCTMMLRHSAQVV 899 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~----~~~~~~~~~~t~~~h----~~~V~sl~fspdg~~La 899 (1249)
..+. |..+|.+++|+|-.. .+++|+.|-+.++|++... .....++-...+.++ ...|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 999999999999766 9999999999999998741 111112211112222 23799999999999999
Q ss_pred EEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcccee
Q 000861 900 VGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWT 979 (1249)
Q Consensus 900 sgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~ 979 (1249)
+|+.||.+++|+.+ |.+ +..+..|.++|+++. |+.. |++|++++.|+++.+||..+++..+.
T Consensus 252 tG~~~G~~riw~~~------G~l--------~~tl~~HkgPI~slK-Wnk~---G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 252 TGSEDGEARIWNKD------GNL--------ISTLGQHKGPIFSLK-WNKK---GTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred EeecCcEEEEEecC------chh--------hhhhhccCCceEEEE-EcCC---CCEEEeccCCccEEEEeccCceEEEe
Confidence 99999999999998 543 667778999999999 9998 88999999999999999999988877
Q ss_pred eecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 980 LKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 980 l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
+.. |..+-..+.|-.+ ..+++.+.||.|+++.+....|+.++.. |.++|.++.| .|.+. +|++++.
T Consensus 314 f~~--~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~-n~tg~---------LLaS~Sd 379 (524)
T KOG0273|consen 314 FEF--HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKW-NPTGS---------LLASCSD 379 (524)
T ss_pred eee--ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEE-CCCCc---------eEEEecC
Confidence 765 6666567777644 4788999999999999999999999875 9999999999 99998 9999999
Q ss_pred CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecC-
Q 000861 1060 CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLP- 1138 (1249)
Q Consensus 1060 Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~sp- 1138 (1249)
|+++++|+...+.+...+..|.. ++..+.|+|..|. ...|
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hsk----ei~t~~wsp~g~v-----------------------------------~~n~~ 420 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSK----EIYTIKWSPTGPV-----------------------------------TSNPN 420 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhcc----ceeeEeecCCCCc-----------------------------------cCCCc
Confidence 99999999988888777765432 4555555542221 1222
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccC
Q 000861 1139 GG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAG 1217 (1249)
Q Consensus 1139 dg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 1217 (1249)
.+ .+++++.|++|++||+..+.+...+.
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~--------------------------------------------------- 449 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVPIHTLM--------------------------------------------------- 449 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCceeEeec---------------------------------------------------
Confidence 23 79999999999999999988766553
Q ss_pred CcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1218 CHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1218 ~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.|+..|.+++ |+|+|++++||+.||.|.+|+
T Consensus 450 kH~~pVysva-fS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 450 KHQEPVYSVA-FSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred cCCCceEEEE-ecCCCcEEEecCCCCeeEecc
Confidence 5889999999 999999999999999999995
No 27
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-31 Score=323.40 Aligned_cols=384 Identities=17% Similarity=0.139 Sum_probs=339.4
Q ss_pred cCCCCCCCCCCCCCccccccccccccccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCC
Q 000861 107 CSNVKPMPEDVPNSTFSQDLRNSSVESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDS 186 (1249)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1249)
+...+|||||+++++++.+++-+.....++.+.++|..+.+||||+||..+++.+.+++..+
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~------------------ 307 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLL------------------ 307 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhc------------------
Confidence 45678999999999999999988899999999999999999999999999999999999999
Q ss_pred CCc-ccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccc
Q 000861 187 MKC-EGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLV 265 (1249)
Q Consensus 187 ~~~-~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v 265 (1249)
... +....+...+++...+ .+|+.|++..+.+..++..++.+......+|.+..+++|.+.+||.++......+...+
T Consensus 308 ~~~~d~~~~~~~~l~~~~~d-~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 308 DDDDDVVKSLTESLVQAVED-GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred CCchhhhhhhhHHHHHHhcC-hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 333 4555688889999999 99999999999999999999998887888999999999999999999999998888877
Q ss_pred cccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhh
Q 000861 266 RNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQ 345 (1249)
Q Consensus 266 ~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1249)
.... -.+++...|||.++.++.|.+.+||.+.|..+..+++..++-..+
T Consensus 387 ~~~~--~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti----------------------------- 435 (759)
T KOG0211|consen 387 NASC--YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI----------------------------- 435 (759)
T ss_pred Cccc--ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc-----------------------------
Confidence 6322 245777889999999999999999999999999988776622222
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH---HhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHH
Q 000861 346 LQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALL---QDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVF 422 (1249)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all---~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~ 422 (1249)
..++|.+..++ +|+.++||.+++ ..+..+....|.+...+.+||.+.++..|..||+|.||
T Consensus 436 --------------~~llp~~~~~l--~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai 499 (759)
T KOG0211|consen 436 --------------SELLPLLIGNL--KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAI 499 (759)
T ss_pred --------------cccChhhhhhc--chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence 46788888888 689999999999 77888899999999999999999999999999999999
Q ss_pred HhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhcccccCCCHHHHHHH
Q 000861 423 YGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS-GYLRKRILLEMIERAFPLLCYPSQWVRRSV 501 (1249)
Q Consensus 423 ~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~-gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~ 501 (1249)
+++|+.+|.++|.+++.+.+.++|..||.|.+..||.+|.++|+.|++. |. .....+++++.+.+..++|||+|+++
T Consensus 500 l~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~ 577 (759)
T KOG0211|consen 500 LEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTT 577 (759)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHH
Confidence 9999999999999999999999999999999999999999999999998 84 44455899999999999999999999
Q ss_pred HHHHHHHhhcCCccceeeEeeeccchhhhcCCCCcCCH--HHHHhccCCCCcHHHHHHHH
Q 000861 502 VTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASLASV--KALLSCLKPPVSREVFYQVL 559 (1249)
Q Consensus 502 ~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~--~~ll~~l~~PlsR~vf~~~~ 559 (1249)
+..|..++..+|..-+...|+|.+..+..|++|+| +- .-+|.-.++=+.-.+.+..+
T Consensus 578 l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanV-R~nvak~L~~i~~~L~~~~~~~~v 636 (759)
T KOG0211|consen 578 LFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANV-RINVAKHLPKILKLLDESVRDEEV 636 (759)
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhh-hhhHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999997 44 33344444444444444433
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=7.5e-30 Score=277.36 Aligned_cols=280 Identities=19% Similarity=0.269 Sum_probs=236.8
Q ss_pred CCCCCCCCCCccccccCCCCCccCCCC-cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRPRG-ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~~G-~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
.+...|+|..+.+++.++...+|+-++ ..-..+++|..+|.++.|+++|.+++||+.+|.||+|+..-.. ..
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-------Vk 173 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-------VK 173 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-------hH
Confidence 456789999999988788899999532 3334567999999999999999999999999999999987654 22
Q ss_pred Eeec-cCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 878 TYHL-EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 878 t~~~-h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.+.. |...|.+++|+|+...|++|+.||+|+|||... . ..-+.+.+|.-.|.++. |+|. ...
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~------------kee~vL~GHgwdVksvd-WHP~---kgL 236 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-P------------KEERVLRGHGWDVKSVD-WHPT---KGL 236 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-C------------chhheeccCCCCcceec-cCCc---cce
Confidence 3334 557899999999999999999999999999871 1 13455688999999999 9998 569
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEE
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMC 1036 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~ 1036 (1249)
+++|+.|..|++||.++++++.++ .+|...|..+.|+++++||++++.|..++++|+|+.+.+..++ +|...++++.
T Consensus 237 iasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~ 313 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLT 313 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeec
Confidence 999999999999999999999888 6699999999999999999999999999999999888888876 5999999999
Q ss_pred EEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccc
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKY 1116 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~ 1116 (1249)
| +|-.. .++.+|+.||.|..|.+...+.+..+
T Consensus 314 W-hP~~~--------~lftsgg~Dgsvvh~~v~~~~p~~~i--------------------------------------- 345 (464)
T KOG0284|consen 314 W-HPLNE--------SLFTSGGSDGSVVHWVVGLEEPLGEI--------------------------------------- 345 (464)
T ss_pred c-ccccc--------cceeeccCCCceEEEeccccccccCC---------------------------------------
Confidence 9 99775 57888899999999998622211111
Q ss_pred cccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCC
Q 000861 1117 RVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1117 ~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
+..|...|++++|+|-| .|++|+.|.++|+|.-..+.
T Consensus 346 -------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 346 -------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred -------CcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 13566699999999999 99999999999999876543
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=248.31 Aligned_cols=295 Identities=13% Similarity=0.213 Sum_probs=236.5
Q ss_pred EEEEeccccCceeEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccceeeEe-eccCCceEEEEEecCCCEEEEEeCC
Q 000861 827 LVAHLQEHCSAVNEIAISHD-HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY-HLEGSRALCTMMLRHSAQVVVGACD 904 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spd-g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~-~~h~~~V~sl~fspdg~~Lasgs~D 904 (1249)
+++.+++|++.|..++|+|. |..|||||.|+.|+||+...+.. +.++..+ .+|...|.+++|+|.|++|++||.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s---~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS---WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc---EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 57889999999999999998 88999999999999999986331 2233233 3688899999999999999999999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc---ceeee
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN---TWTLK 981 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~---~~~l~ 981 (1249)
.++.||.-. .+ ..+++..+++|+.+|-+++ |+++ |.+|++++.|..|.+|.+..+.. ...+
T Consensus 83 ~t~~Iw~k~-----~~------efecv~~lEGHEnEVK~Va-ws~s---G~~LATCSRDKSVWiWe~deddEfec~aVL- 146 (312)
T KOG0645|consen 83 ATVVIWKKE-----DG------EFECVATLEGHENEVKCVA-WSAS---GNYLATCSRDKSVWIWEIDEDDEFECIAVL- 146 (312)
T ss_pred ceEEEeecC-----CC------ceeEEeeeeccccceeEEE-EcCC---CCEEEEeeCCCeEEEEEecCCCcEEEEeee-
Confidence 999999765 12 2356888999999999999 9999 88999999999999999985543 3344
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC---CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 982 AIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR---FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 982 ~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr---~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
.+|...|..+.|+|....|++++.|.+|++|+-. .-.+++++. +|...|.++.| ++.|. .+++++
T Consensus 147 -~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F-~~~G~---------rl~s~s 214 (312)
T KOG0645|consen 147 -QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAF-DNIGS---------RLVSCS 214 (312)
T ss_pred -ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEe-cCCCc---------eEEEec
Confidence 5699999999999999999999999999999865 235677765 57789999999 99887 899999
Q ss_pred CCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecC
Q 000861 1059 GCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLP 1138 (1249)
Q Consensus 1059 ~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~sp 1138 (1249)
.|++++||-..+. +. ..|...+..+.|.
T Consensus 215 dD~tv~Iw~~~~~-----~~----------------------------------------------~~~sr~~Y~v~W~- 242 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD-----LS----------------------------------------------GMHSRALYDVPWD- 242 (312)
T ss_pred CCcceEeeeeccC-----cc----------------------------------------------hhcccceEeeeec-
Confidence 9999999986521 10 0122267778887
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCC
Q 000861 1139 GGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGC 1218 (1249)
Q Consensus 1139 dg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 1218 (1249)
+|.|++|+.|+.|+++.-...-. .+.|. . .......
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d--------------~p~~~-------------------------l-----~~~~~~a 278 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPD--------------EPSWN-------------------------L-----LAKKEGA 278 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCC--------------CchHH-------------------------H-----HHhhhcc
Confidence 77999999999999998653111 11110 0 0012246
Q ss_pred cccceeEEEeeecC-CCEEEEEeCCCeEEEcC
Q 000861 1219 HRDSILSLGSVKLN-QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1219 H~d~I~~la~~s~d-g~~LaSgs~DG~IkVWd 1249 (1249)
|...|++++ |.|. ..+|+|||+||.|++|.
T Consensus 279 He~dVNsV~-w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 279 HEVDVNSVQ-WNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccccceEE-EcCCCCCceeecCCCceEEEEE
Confidence 999999999 9995 78899999999999994
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=266.25 Aligned_cols=291 Identities=19% Similarity=0.249 Sum_probs=235.4
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeE
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGII 907 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I 907 (1249)
.+.|+.|++.|.-+.||++|+++||||.|.+..||++..... ++...++.+|..+|..+.|+||.++|++|+.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 456889999999999999999999999999999999876543 45677899999999999999999999999999999
Q ss_pred EEEEccccccCCCcc-ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 908 HMFSVDHISRGLGNV-EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~-~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
.+||++ +|.. ..|. .++...+.+++ |.|| |..+++|+.|++|..||+.... ....+.. ..
T Consensus 294 ~lwDv~-----tgd~~~~y~--------~~~~~S~~sc~-W~pD---g~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv-r~ 354 (519)
T KOG0293|consen 294 SLWDVD-----TGDLRHLYP--------SGLGFSVSSCA-WCPD---GFRFVTGSPDRTIIMWDLDGNI-LGNWEGV-RD 354 (519)
T ss_pred eeccCC-----cchhhhhcc--------cCcCCCcceeE-EccC---CceeEecCCCCcEEEecCCcch-hhccccc-cc
Confidence 999999 3443 1111 12346788888 9999 7789999999999999996543 3333221 23
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
..|.+++..+||.++++.+.|..|++++..+...+.... ...+|++++. +.+++ ++++.-.+.++.+|
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~i-S~d~k---------~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSI-SKDGK---------LALVNLQDQEIHLW 422 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEE-cCCCc---------EEEEEcccCeeEEe
Confidence 569999999999999999999999999998777665443 4568999999 88888 88888899999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec-CC-CeEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL-PG-GDLLT 1144 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s-pd-g~L~t 1144 (1249)
|++....++.+.++....- -|++ +|. .+ .++++
T Consensus 423 Dl~e~~lv~kY~Ghkq~~f--------------------------------------------iIrS-CFgg~~~~fiaS 457 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHF--------------------------------------------IIRS-CFGGGNDKFIAS 457 (519)
T ss_pred ecchhhHHHHhhcccccce--------------------------------------------EEEe-ccCCCCcceEEe
Confidence 9998777777765433110 2222 232 22 29999
Q ss_pred EeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCccccee
Q 000861 1145 GGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSIL 1224 (1249)
Q Consensus 1145 gs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~ 1224 (1249)
|++|+.|+||+..+++.+.+++ ||...|+
T Consensus 458 GSED~kvyIWhr~sgkll~~Ls---------------------------------------------------GHs~~vN 486 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLAVLS---------------------------------------------------GHSKTVN 486 (519)
T ss_pred cCCCceEEEEEccCCceeEeec---------------------------------------------------CCcceee
Confidence 9999999999999988866664 6788999
Q ss_pred EEEeeecC-CCEEEEEeCCCeEEEcC
Q 000861 1225 SLGSVKLN-QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1225 ~la~~s~d-g~~LaSgs~DG~IkVWd 1249 (1249)
+++ |+|. ..|+||||+||+||||.
T Consensus 487 cVs-wNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 487 CVS-WNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EEe-cCCCCHHHhhccCCCCeEEEec
Confidence 999 8885 67899999999999994
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=8.4e-27 Score=302.28 Aligned_cols=301 Identities=14% Similarity=0.177 Sum_probs=230.8
Q ss_pred eccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccc-c-cceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeE
Q 000861 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDI-S-FRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGII 907 (1249)
Q Consensus 831 L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~-~-~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I 907 (1249)
+..|.+.|++++|+|+|+++|||+.||+|+|||........ . ..+...+.+ ...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45599999999999999999999999999999986431100 0 001223333 45799999987 47899999999999
Q ss_pred EEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC
Q 000861 908 HMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
++||+. .+ ..+..+.+|.+.|+++. |+|.. +.+|++|+.||.|++||++++.....+.. ..
T Consensus 558 ~lWd~~-----~~--------~~~~~~~~H~~~V~~l~-~~p~~--~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---~~ 618 (793)
T PLN00181 558 QVWDVA-----RS--------QLVTEMKEHEKRVWSID-YSSAD--PTLLASGSDDGSVKLWSINQGVSIGTIKT---KA 618 (793)
T ss_pred EEEECC-----CC--------eEEEEecCCCCCEEEEE-EcCCC--CCEEEEEcCCCEEEEEECCCCcEEEEEec---CC
Confidence 999998 12 23667788999999999 98742 56999999999999999999988777753 46
Q ss_pred ceEEEEEc-CCCCEEEEEecCCcEEEEeCCCCC-cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEE
Q 000861 988 YVSSLVTG-PCGNWFVSGSSRGVLTLWDLRFLV-PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSL 1065 (1249)
Q Consensus 988 ~I~sl~~s-pdg~~L~sgs~dG~I~lWDlr~~~-~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~v 1065 (1249)
.|.++.|+ +++.+|++|+.||.|++||++... ++..+. +|...|..+.| . ++. ++++++.|+.|++
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f-~-~~~---------~lvs~s~D~~iki 686 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRF-V-DSS---------TLVSSSTDNTLKL 686 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEE-e-CCC---------EEEEEECCCEEEE
Confidence 79999995 578999999999999999998765 444543 68889999999 5 455 7999999999999
Q ss_pred EECCCCc------eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCC
Q 000861 1066 WNAENGS------CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG 1139 (1249)
Q Consensus 1066 WDl~tg~------~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd 1139 (1249)
||+..+. ++..+ .+|...+.+++|+++
T Consensus 687 Wd~~~~~~~~~~~~l~~~-----------------------------------------------~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 687 WDLSMSISGINETPLHSF-----------------------------------------------MGHTNVKNFVGLSVS 719 (793)
T ss_pred EeCCCCccccCCcceEEE-----------------------------------------------cCCCCCeeEEEEcCC
Confidence 9997532 11111 234447888999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCC
Q 000861 1140 G-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGC 1218 (1249)
Q Consensus 1140 g-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 1218 (1249)
+ +|++|+.|+.|++|+...+............. .. ......
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~-----------~~---------------------------~~~~~~ 761 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP-----------VS---------------------------GLEVDD 761 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCc-----------cc---------------------------ccccCC
Confidence 9 99999999999999987654432221110000 00 001224
Q ss_pred cccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1219 HRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1219 H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|...|.+++ |++++.+|++|+.||.|+||+
T Consensus 762 ~~~~V~~v~-ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 762 ASQFISSVC-WRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred CCcEEEEEE-EcCCCCeEEEecCCCcEEEEe
Confidence 677899999 999999999999999999996
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.9e-29 Score=264.13 Aligned_cols=295 Identities=20% Similarity=0.326 Sum_probs=239.1
Q ss_pred CCccCCCCcEEEEec---cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 818 DSGWRPRGILVAHLQ---EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~---~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
..-|+-..-++.++. +....|.|+.+. ...+++|..|++|+|||..+.+ +...+.||++.|.|+.|.
T Consensus 177 dsNWr~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~------c~~~L~GHtGSVLCLqyd-- 246 (499)
T KOG0281|consen 177 ESNWRCGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE------CLKILTGHTGSVLCLQYD-- 246 (499)
T ss_pred hcchhccceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHH------HHHhhhcCCCcEEeeecc--
Confidence 446776555666665 345789999985 4579999999999999999887 456788999999999995
Q ss_pred CCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC
Q 000861 895 SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN 974 (1249)
Q Consensus 895 g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~ 974 (1249)
.+.+++|+.|.+|++||++ +|+ +++++-.|...|..+. |+.. ++++++.|.+|.+||+...
T Consensus 247 ~rviisGSSDsTvrvWDv~-----tge--------~l~tlihHceaVLhlr-f~ng-----~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVN-----TGE--------PLNTLIHHCEAVLHLR-FSNG-----YMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred ceEEEecCCCceEEEEecc-----CCc--------hhhHHhhhcceeEEEE-EeCC-----EEEEecCCceeEEEeccCc
Confidence 4699999999999999999 343 4667777999999998 8877 9999999999999999877
Q ss_pred ccceee-ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCE
Q 000861 975 SNTWTL-KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPL 1053 (1249)
Q Consensus 975 ~~~~~l-~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~ 1053 (1249)
..+... ...+|...|..+.|+.. ++++++.|.+|++|++.+++.++++. +|...|-++.+ .++ +
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQY---r~r---------l 372 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQY---RDR---------L 372 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhh-cccccceehhc---cCe---------E
Confidence 532111 23679999999998754 99999999999999999999999975 68888988888 455 8
Q ss_pred EEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEE
Q 000861 1054 IYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRS 1133 (1249)
Q Consensus 1054 l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~s 1133 (1249)
+++|+.|++|++||++.|.|+.+++++.. -|+|
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEe-----------------------------------------------LvRc 405 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEE-----------------------------------------------LVRC 405 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHH-----------------------------------------------hhhh
Confidence 99999999999999999999988885432 5788
Q ss_pred EeecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcc
Q 000861 1134 LLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAAT 1213 (1249)
Q Consensus 1134 l~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~ 1213 (1249)
+.|. +..+++|+.||+|++||+..+...+...+.- ..
T Consensus 406 iRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~------------------------------------------Cl 442 (499)
T KOG0281|consen 406 IRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTL------------------------------------------CL 442 (499)
T ss_pred eeec-CceeeeccccceEEEEecccccCCcccccch------------------------------------------HH
Confidence 8874 3389999999999999998776533221110 01
Q ss_pred cccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1214 DSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1214 ~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
..+..|.+.|..+. | |...+++++.|.+|-|||
T Consensus 443 ~~lv~hsgRVFrLQ-F--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQ-F--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred HhhhhccceeEEEe-e--cceEEEeccCCCeEEEEE
Confidence 12335899999998 4 788899999999999997
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.8e-28 Score=287.41 Aligned_cols=220 Identities=18% Similarity=0.310 Sum_probs=199.7
Q ss_pred CCccCC-CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC
Q 000861 818 DSGWRP-RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA 896 (1249)
Q Consensus 818 ~~~W~~-~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~ 896 (1249)
..+-++ .+....+|.||.++|..+.|+|+.++|+++|.|++||+|.+.+.. +...|.+|..+|+++.|+|.|.
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s------~~V~y~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS------CLVIYKGHLAPVWDVQFAPRGY 506 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce------eEEEecCCCcceeeEEecCCce
Confidence 344443 345566799999999999999999999999999999999999876 5678999999999999999999
Q ss_pred EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 897 QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 897 ~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
+||+||.|++.++|..++ ..++|.+.+|-+.|.|+. |+|+ ..++++|+.|.+|++||+.+|..
T Consensus 507 YFatas~D~tArLWs~d~-------------~~PlRifaghlsDV~cv~-FHPN---s~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDH-------------NKPLRIFAGHLSDVDCVS-FHPN---SNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred EEEecCCCceeeeeeccc-------------CCchhhhcccccccceEE-ECCc---ccccccCCCCceEEEEEcCCCcE
Confidence 999999999999999982 235788899999999999 9999 78999999999999999999999
Q ss_pred ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEE
Q 000861 977 TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYV 1056 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t 1056 (1249)
++.+ .+|.++|++++|+|+|++|++|+.||.|.+||+..+..+..+. +|.+.|.++.| +.+|. .|++
T Consensus 570 VRiF--~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsF-S~dg~---------vLas 636 (707)
T KOG0263|consen 570 VRIF--TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSF-SRDGN---------VLAS 636 (707)
T ss_pred EEEe--cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEE-ecCCC---------EEEe
Confidence 9888 5699999999999999999999999999999999999999976 58999999999 99998 9999
Q ss_pred EECCCeEEEEECCCCce
Q 000861 1057 AAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 1057 ~s~Dg~I~vWDl~tg~~ 1073 (1249)
|+.|++|++||+..-..
T Consensus 637 gg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 637 GGADNSVRLWDLTKVIE 653 (707)
T ss_pred cCCCCeEEEEEchhhcc
Confidence 99999999999975443
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=3.5e-28 Score=285.10 Aligned_cols=260 Identities=19% Similarity=0.244 Sum_probs=227.1
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc--c---------c--------------cccceeeEee
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE--K---------D--------------ISFRSRLTYH 880 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~--~---------~--------------~~~~~~~t~~ 880 (1249)
.+.+++.--...++|..|++|++.+|.|-.|..|++|.+.... + . ..-....++-
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 4666776555789999999999999999999999999987311 0 0 0011234688
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE
Q 000861 881 LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg 960 (1249)
+|.++|..+.|+|+.++|++++.|+++|+|.+++ ..++..+.+|..+|+++. |+|. |-+++++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-------------~s~~V~y~GH~~PVwdV~-F~P~---GyYFata 511 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-------------WSCLVIYKGHLAPVWDVQ-FAPR---GYYFATA 511 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeeccc-------------ceeEEEecCCCcceeeEE-ecCC---ceEEEec
Confidence 9999999999999999999999999999999981 224677889999999999 9999 8899999
Q ss_pred ECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcC
Q 000861 961 TQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 961 s~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
+.|++-++|........+.+ .+|.+.|.|+.|+|+.+++++|+.|.+|++||..+|..++.|. ||.++|.+++| +|
T Consensus 512 s~D~tArLWs~d~~~PlRif--aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~-Sp 587 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIF--AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAF-SP 587 (707)
T ss_pred CCCceeeeeecccCCchhhh--cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEE-cC
Confidence 99999999999988888777 5699999999999999999999999999999999999999986 69999999999 99
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDE 1120 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~ 1120 (1249)
+|. +|++|+.||.|.+||+.+|+.+..+.+|.
T Consensus 588 ~Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht--------------------------------------- 619 (707)
T KOG0263|consen 588 CGR---------YLASGDEDGLIKIWDLANGSLVKQLKGHT--------------------------------------- 619 (707)
T ss_pred CCc---------eEeecccCCcEEEEEcCCCcchhhhhccc---------------------------------------
Confidence 998 99999999999999999998887777542
Q ss_pred cCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCcc
Q 000861 1121 LNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRS 1162 (1249)
Q Consensus 1121 ~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~ 1162 (1249)
+.|.++.|+.|| .|++||.|++|++||+......
T Consensus 620 --------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 620 --------GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred --------CceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 278999999999 9999999999999999765443
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=275.23 Aligned_cols=409 Identities=17% Similarity=0.219 Sum_probs=305.8
Q ss_pred ccccccccccCCCCCCCCCCCCccccccCCCCCccCC-CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECC
Q 000861 787 TAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRP-RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR 865 (1249)
Q Consensus 787 ~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~~-~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~ 865 (1249)
+..+|...+. ..+|+..|..+++++.|...-+|+. .-.-...|+||++.|+..-|..+.+++++.|.|+.||+||+.
T Consensus 102 tfngHK~AVt--~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 102 TFNGHKAAVT--TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eecccccceE--EEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 3445555554 5678999999999998888999994 334578899999999999999988999999999999999999
Q ss_pred CCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccC-----------CCcc------------
Q 000861 866 KLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRG-----------LGNV------------ 922 (1249)
Q Consensus 866 ~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~-----------~g~~------------ 922 (1249)
+.. +..+.-.|.+.|+++++.+ +.+++++.|+.+++|++...... .|.+
T Consensus 180 tqh------Cf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 180 TQH------CFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred cce------eeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 876 5667888999999999987 78999999999999998210000 0000
Q ss_pred ----cc-------------c------------cC---------c------------------------------------
Q 000861 923 ----EK-------------Y------------SG---------I------------------------------------ 928 (1249)
Q Consensus 923 ----~~-------------~------------~~---------~------------------------------------ 928 (1249)
.+ | .+ .
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 00 0 00 0
Q ss_pred --cc---------------------e---------eeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 929 --SD---------------------I---------KKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 929 --~~---------------------i---------~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
.. . -.+.+|...|.+++ ++.++ .++..+..+.|++|+..++++
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~-vS~d~----~~~~Sga~~SikiWn~~t~kc 406 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC-VSSDS----ILLASGAGESIKIWNRDTLKC 406 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE-eecCc----eeeeecCCCcEEEEEccCcce
Confidence 00 0 11234666777777 77762 455555678999999999999
Q ss_pred ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEE
Q 000861 977 TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYV 1056 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t 1056 (1249)
+.++. .+.+.+.+|-|.++++++|+..|.+.+||+.....+.+.. .|.+.|+.++. .|++. .+++
T Consensus 407 iRTi~----~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~-~pD~~---------g~vT 471 (888)
T KOG0306|consen 407 IRTIT----CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISL-SPDNK---------GFVT 471 (888)
T ss_pred eEEec----cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeee-cCCCC---------ceEE
Confidence 99985 4589999999999999999999999999999999888877 69999999999 99998 7999
Q ss_pred EECCCeEEEEECCC-----CceeEEEecccC---CCCCCcccccccccCCCCCCCCCcccccccc----cccccc---cc
Q 000861 1057 AAGCNEVSLWNAEN-----GSCHQVLRTANY---DGDTEMSDLPWAFARPSSRSNPKTDLRRNVN----QKYRVD---EL 1121 (1249)
Q Consensus 1057 ~s~Dg~I~vWDl~t-----g~~~~~l~~~~~---~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~----~~~~~~---~~ 1121 (1249)
|+.|.+|++||..- |...+.+..... .-...+.++.+ +|||+.++. .+.++. .+
T Consensus 472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-----------Spdgk~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-----------SPDGKLLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE-----------cCCCcEEEEEeccCeEEEEEecce
Confidence 99999999999741 222222221111 01223344444 457776654 233322 22
Q ss_pred ---CCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCC
Q 000861 1122 ---NEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQP 1197 (1249)
Q Consensus 1122 ---~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~ 1197 (1249)
-...+|.-+|.|+..+||+ .++|||.|..|++|-+.=|.+-+.+.+|. .++-++.|.|+....-
T Consensus 541 KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd------------DSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD------------DSVMSVQFLPKTHLFF 608 (888)
T ss_pred eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc------------CceeEEEEcccceeEE
Confidence 2447999999999999999 99999999999999999998877776664 3445677777533222
Q ss_pred c-cchhhHHHHHhhh--cccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1198 L-TSKLTAKAVLAAA--ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1198 ~-~~~~~~~~~~~~~--~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+ +.+...+.|.... ....+.+|...|+|++ ..|+|.+++|+|.|..|++|.
T Consensus 609 t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeee
Confidence 2 4455556664432 3447889999999999 899999999999999999994
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=259.68 Aligned_cols=275 Identities=16% Similarity=0.225 Sum_probs=241.4
Q ss_pred CCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeE
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT 878 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t 878 (1249)
+-|.|+-...++.+.+.+.++|+ .+|++...|+||+++|..|+|+..|+++|++|.|-.+++||..+.. ++...
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-----~c~ks 188 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-----RCIKS 188 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-----HHHHH
Confidence 34556555666666678899999 8999999999999999999999999999999999999999998743 35667
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE
Q 000861 879 YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM 958 (1249)
Q Consensus 879 ~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~ 958 (1249)
..+|...|.+++|.|.|.++++++.|.+|+.|+++ +|. +++++.+|...|..+. .+.| |.+++
T Consensus 189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-----tg~--------cv~t~~~h~ewvr~v~-v~~D---Gti~A 251 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-----TGY--------CVKTFPGHSEWVRMVR-VNQD---GTIIA 251 (406)
T ss_pred hcCcccceeeEEEEecCCeeeecccccceeEEecc-----cce--------eEEeccCchHhEEEEE-ecCC---eeEEE
Confidence 88999999999999999999999999999999999 232 5788888999888887 7777 88999
Q ss_pred EEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCC---------------CCEEEEEecCCcEEEEeCCCCCcccc
Q 000861 959 YSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC---------------GNWFVSGSSRGVLTLWDLRFLVPVNS 1023 (1249)
Q Consensus 959 sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd---------------g~~L~sgs~dG~I~lWDlr~~~~l~s 1023 (1249)
+++.|.+|++|-+.++++...+ ..|.-+|.|++|-|. +.++.+|+.|++|++||+.++.++.+
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~l--R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAEL--REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ecCCCceEEEEEeccchhhhhh--hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 9999999999999999887777 458889999998763 25899999999999999999999999
Q ss_pred cccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCC
Q 000861 1024 WQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSN 1103 (1249)
Q Consensus 1024 ~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~ 1103 (1249)
+. +|...|..++| +|.|+ ||+++..|+++++||+.+++|..++..+.
T Consensus 330 L~-ghdnwVr~~af-~p~Gk---------yi~ScaDDktlrvwdl~~~~cmk~~~ah~---------------------- 376 (406)
T KOG0295|consen 330 LV-GHDNWVRGVAF-SPGGK---------YILSCADDKTLRVWDLKNLQCMKTLEAHE---------------------- 376 (406)
T ss_pred Ee-cccceeeeeEE-cCCCe---------EEEEEecCCcEEEEEeccceeeeccCCCc----------------------
Confidence 76 69999999999 99998 99999999999999999999988877322
Q ss_pred CCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeC
Q 000861 1104 PKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1104 ~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl 1156 (1249)
.-|+++.|+.+. +++||+-|.++++|.-
T Consensus 377 -------------------------hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 -------------------------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -------------------------ceeEEEecCCCCceEEeccccceeeeeec
Confidence 267889998877 9999999999999963
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=254.83 Aligned_cols=282 Identities=20% Similarity=0.271 Sum_probs=241.7
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.+.|-....++++.|.+.++|+ .+|++..+|.||...|..+++|+-..|+++++.|+.||.||+...+. ..
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv------IR 229 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV------IR 229 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh------HH
Confidence 455666666667777788999999 89999999999999999999999999999999999999999998763 45
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.|.+|-+.|.|++.+|.-+.|++|+.|.+++|||++. + ..+..+.+|..+|..+. +.|. ...+
T Consensus 230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt------r-------~~V~~l~GH~~~V~~V~-~~~~---dpqv 292 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT------R-------ASVHVLSGHTNPVASVM-CQPT---DPQV 292 (460)
T ss_pred HhccccceeEEEeccccceeEEecCCcceEEEeeecc------c-------ceEEEecCCCCcceeEE-eecC---CCce
Confidence 7899999999999999999999999999999999991 1 25788999999999998 8877 4589
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
++|+.|++|++||++.|+...++.. |...+.+++.+|....+++++.| .++.|++..+..+..+ .+|..-|..+..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-sgh~~iintl~~ 368 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-SGHNAIINTLSV 368 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc-ccccceeeeeee
Confidence 9999999999999999998877754 88999999999999999999877 6899999999988885 468888999998
Q ss_pred EcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccc
Q 000861 1038 FVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR 1117 (1249)
Q Consensus 1038 ~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~ 1117 (1249)
..++ ++++|+..|.+.+||.++|.+.+.......+. +
T Consensus 369 -nsD~----------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG---------------S----------------- 405 (460)
T KOG0285|consen 369 -NSDG----------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG---------------S----------------- 405 (460)
T ss_pred -ccCc----------eEEEcCCceEEEEEecCcCcccccccccccCC---------------c-----------------
Confidence 7666 58899999999999999998766654322111 0
Q ss_pred ccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1118 VDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1118 ~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
-....+|.+.+|...| .|+||..|.+|++|.-.
T Consensus 406 -------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 -------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred -------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0112389999999999 99999999999999754
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.9e-26 Score=266.61 Aligned_cols=388 Identities=15% Similarity=0.216 Sum_probs=289.5
Q ss_pred CCCCCCCCCCccccccCCCCCccCC---CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCC---------
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRP---RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRK--------- 866 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~---~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~--------- 866 (1249)
.+.++.|...+.+++.|.+.++|.. .+-....|.||+++|-++.|..+..-+.|.+.||.+.+|.+..
T Consensus 150 si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~ 229 (893)
T KOG0291|consen 150 SIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAE 229 (893)
T ss_pred EEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccc
Confidence 4667777778888787888899983 3455778999999999999999999999999999999998871
Q ss_pred --------------Ccc-cc---ccceeeE-eeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccc-----------
Q 000861 867 --------------LEK-DI---SFRSRLT-YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHIS----------- 916 (1249)
Q Consensus 867 --------------~~~-~~---~~~~~~t-~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~----------- 916 (1249)
++. .. ..+.... +......|++.+|++..+.|++|-..|...+|.+....
T Consensus 230 kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 230 KDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK 309 (893)
T ss_pred ccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce
Confidence 111 00 0011111 22233679999999999999999888888888764200
Q ss_pred ------cCCCc-----------c--ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 917 ------RGLGN-----------V--EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 917 ------~~~g~-----------~--~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
..+|. + -.+.....+-+.++|...+++++ ++|| |+++++|+.||.|++||..++-|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~-YSpD---gq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA-YSPD---GQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE-ECCC---CcEEEeccCCCcEEEEeccCceEE
Confidence 00011 1 00111123444567889999999 9999 789999999999999999999999
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
.++ ..|.+.|+.++|+..|+.+++.+.||+|+.||+...+..++++.+......+++. .|.|. .+++|
T Consensus 386 vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav-D~sGe---------lV~AG 453 (893)
T KOG0291|consen 386 VTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-DPSGE---------LVCAG 453 (893)
T ss_pred EEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE-cCCCC---------EEEee
Confidence 888 4599999999999999999999999999999999999999999887777888988 88887 67777
Q ss_pred ECCC-eEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc----ccccccccCCC------CC
Q 000861 1058 AGCN-EVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN----QKYRVDELNEP------PP 1126 (1249)
Q Consensus 1058 s~Dg-~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~----~~~~~~~~~~~------~~ 1126 (1249)
+.|. .|.+|++.+|+.+..+.+|.+ ++..+.|+| +|..++. .++++|++... -.
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEg----PVs~l~f~~-----------~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEG----PVSGLSFSP-----------DGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCC----cceeeEEcc-----------ccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 7665 699999999999999987654 444555544 5555554 45677876544 23
Q ss_pred CCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHH
Q 000861 1127 RLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAK 1205 (1249)
Q Consensus 1127 ~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~ 1205 (1249)
+...+.+++|+||| .++.+.-||.|.+||...+.+...+.|..--..+ + ...|.. +.
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g-R------------~~~D~~----ta----- 576 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG-R------------KETDRI----TA----- 576 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc-c------------ccccee----eh-----
Confidence 44678999999999 9999999999999999988776666554310000 0 000000 00
Q ss_pred HHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1206 AVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1206 ~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.-.......+.++ +++||.++++||....|++|+
T Consensus 577 ---------~~sa~~K~Ftti~-ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 577 ---------ENSAKGKTFTTIC-YSADGKCILAGGESNSICIYD 610 (893)
T ss_pred ---------hhcccCCceEEEE-EcCCCCEEEecCCcccEEEEE
Confidence 0012346789999 999999999999999999985
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=251.43 Aligned_cols=291 Identities=20% Similarity=0.337 Sum_probs=245.1
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc--cccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE--KDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~--~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
.+.-+.|..|+|||+|+++||.||.|.+||..+++ ++..++..-.+.-+...|.|++|+.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45567899999999999999999999999999886 3444555556777888999999999999999999999999999
Q ss_pred ccccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceE
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS 990 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~ 990 (1249)
+. +|. +++.++ .|...|+|+. |+.| +..+++++.|.++++.-+.+|+++..+ .+|.+.|+
T Consensus 292 i~-----tG~--------ClRrFdrAHtkGvt~l~-FSrD---~SqiLS~sfD~tvRiHGlKSGK~LKEf--rGHsSyvn 352 (508)
T KOG0275|consen 292 IE-----TGQ--------CLRRFDRAHTKGVTCLS-FSRD---NSQILSASFDQTVRIHGLKSGKCLKEF--RGHSSYVN 352 (508)
T ss_pred Ee-----cch--------HHHHhhhhhccCeeEEE-EccC---cchhhcccccceEEEeccccchhHHHh--cCcccccc
Confidence 99 344 356665 6889999999 9999 668999999999999999999999888 56999999
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC-CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 991 SLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS-QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 991 sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~-~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
...|.++|+.++++++||+|++|+..+.+++.++..+ ...+|.++.. .|... ..+++|...+++.+.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~-~PKnp--------eh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL-LPKNP--------EHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE-cCCCC--------ceEEEEcCCCeEEEEecc
Confidence 9999999999999999999999999999999998754 3457888887 66554 478999999999999986
Q ss_pred CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCC
Q 000861 1070 NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTD 1148 (1249)
Q Consensus 1070 tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~D 1148 (1249)
|+.++.+....... +...+++.+|.| ++.+.|.|
T Consensus 424 -GQvVrsfsSGkREg--------------------------------------------GdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREG--------------------------------------------GDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred -ceEEeeeccCCccC--------------------------------------------CceEEEEecCCCcEEEEEccC
Confidence 77777665322111 134567788999 99999999
Q ss_pred CcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEe
Q 000861 1149 LKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGS 1228 (1249)
Q Consensus 1149 g~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~ 1228 (1249)
+.++.|.+.+++.-..+. -|...|..++
T Consensus 459 ~vlYCF~~~sG~LE~tl~---------------------------------------------------VhEkdvIGl~- 486 (508)
T KOG0275|consen 459 GVLYCFSVLSGKLERTLP---------------------------------------------------VHEKDVIGLT- 486 (508)
T ss_pred cEEEEEEeecCceeeeee---------------------------------------------------cccccccccc-
Confidence 999999998877644442 4667788888
Q ss_pred eecCCCEEEEEeCCCeEEEcC
Q 000861 1229 VKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1229 ~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
-+|..++|+|=+.||.+|+|+
T Consensus 487 HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCcccchhhhhcccchhhhcC
Confidence 789999999999999999996
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=236.48 Aligned_cols=254 Identities=19% Similarity=0.259 Sum_probs=215.3
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI 906 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~ 906 (1249)
....|..|.++|.++.|+-||+|.+||+.|.+||+|+...+. ...+|.+|+..|..++.+.|+..|++|+.|..
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc------eeeeecCCCceeeeccccccccccccCCCCce
Confidence 456788999999999999999999999999999999999887 57799999999999999999999999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc--cceeeecCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS--NTWTLKAIP 984 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~--~~~~l~~~~ 984 (1249)
+.+||+. +|++ ++.+.+|.+.|..+. |+.+ ...+++|+.|.++++||.|+.. +++.+ ..
T Consensus 83 v~vwDV~-----TGkv--------~Rr~rgH~aqVNtV~-fNee---sSVv~SgsfD~s~r~wDCRS~s~ePiQil--de 143 (307)
T KOG0316|consen 83 VQVWDVN-----TGKV--------DRRFRGHLAQVNTVR-FNEE---SSVVASGSFDSSVRLWDCRSRSFEPIQIL--DE 143 (307)
T ss_pred EEEEEcc-----cCee--------eeecccccceeeEEE-ecCc---ceEEEeccccceeEEEEcccCCCCccchh--hh
Confidence 9999999 4554 788899999999999 9988 6699999999999999999764 45555 33
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEE
Q 000861 985 EEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVS 1064 (1249)
Q Consensus 985 h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~ 1064 (1249)
....|.++.+. +..+++|+.||+++.||+|.|.....+ ...||++++| +++++ ..++++-|++++
T Consensus 144 a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~-s~d~n---------c~La~~l~stlr 208 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSF-SKDGN---------CSLASSLDSTLR 208 (307)
T ss_pred hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEe-cCCCC---------EEEEeeccceee
Confidence 46778888775 568999999999999999999887664 3458999999 99998 889999999999
Q ss_pred EEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEE
Q 000861 1065 LWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLL 1143 (1249)
Q Consensus 1065 vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~ 1143 (1249)
+.|-++|+.++.+.++.... | .+. ++++... .++
T Consensus 209 LlDk~tGklL~sYkGhkn~e-------------------------------y-------------kld-c~l~qsdthV~ 243 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNME-------------------------------Y-------------KLD-CCLNQSDTHVF 243 (307)
T ss_pred ecccchhHHHHHhcccccce-------------------------------e-------------eee-eeecccceeEE
Confidence 99999999999888654311 0 222 2333333 899
Q ss_pred EEeCCCcEEEEeCCCCCccEEE
Q 000861 1144 TGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1144 tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
+|++||.|.+||+.+......+
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eccCCceEEEEEeccceeeeee
Confidence 9999999999999887664444
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=240.36 Aligned_cols=279 Identities=16% Similarity=0.200 Sum_probs=222.2
Q ss_pred CCCC-CCCccccccCCCCCccCCCC----cEEEEec-cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccce
Q 000861 802 ADLT-GLPSFVRTSSIPDSGWRPRG----ILVAHLQ-EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 802 ~s~~-G~~~~~~s~~~~~~~W~~~G----~lv~~L~-~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~ 875 (1249)
++|- |..+++.+.+...++|+..+ .+..+|. +|+..|.+++|+|.|++||+||.|.++.||.-..++ |++
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e----fec 97 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE----FEC 97 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc----eeE
Confidence 3444 76677777678899999552 4555664 699999999999999999999999999999877554 557
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
..++.||...|.|++|+++|++||+++.|.+|.||.++ .. + ...++..++.|...|-.+. |+|. ..
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-ed---d------Efec~aVL~~HtqDVK~V~-WHPt---~d 163 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-ED---D------EFECIAVLQEHTQDVKHVI-WHPT---ED 163 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CC---C------cEEEEeeeccccccccEEE-EcCC---cc
Confidence 88999999999999999999999999999999999998 11 1 2345777889999999998 9997 56
Q ss_pred EEEEEECCCeEEEEEcCC-C--ccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCe
Q 000861 956 MFMYSTQNCGIHLWDTRS-N--SNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPI 1032 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt-~--~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I 1032 (1249)
+|++++.|++|++|+-.. . .+..++ .+|.+.|.+++|++.|..|++++.|++++||-+.+ .+..-|..++
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl--~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~ 236 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTL--DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRAL 236 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEe--cCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchhcccce
Confidence 999999999999998773 3 334455 66889999999999999999999999999998763 3344477789
Q ss_pred eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccc
Q 000861 1033 EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNV 1112 (1249)
Q Consensus 1033 ~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~ 1112 (1249)
+.+.| . ++ .|+++++|+.|++|.-..+-....+...
T Consensus 237 Y~v~W-~-~~----------~IaS~ggD~~i~lf~~s~~~d~p~~~l~-------------------------------- 272 (312)
T KOG0645|consen 237 YDVPW-D-NG----------VIASGGGDDAIRLFKESDSPDEPSWNLL-------------------------------- 272 (312)
T ss_pred Eeeee-c-cc----------ceEeccCCCEEEEEEecCCCCCchHHHH--------------------------------
Confidence 99999 5 44 5999999999999975532110011000
Q ss_pred cccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCC
Q 000861 1113 NQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~ 1157 (1249)
......|...|+++.|.|.+ +|++||+||.|++|.+.
T Consensus 273 --------~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 --------AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 00113455589999999954 99999999999999874
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=280.22 Aligned_cols=280 Identities=22% Similarity=0.326 Sum_probs=232.6
Q ss_pred CCCCCCCCCCccccccCCCCCccCC-CCc--EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccce
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRP-RGI--LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~-~G~--lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~ 875 (1249)
...|+++|..++..+.+....+|+. .++ +...+.+|...|++++|+||++++++|+.|++++|||+..... .
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~-----~ 238 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR-----N 238 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe-----E
Confidence 4679999999888777788899994 666 7888899999999999999999999999999999999944322 5
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
..++.+|...|++++|+|+|+.+++|+.|++|++||+. .+ .+++.+.+|.+.|+++. |+++ +.
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-----~~--------~~~~~l~~hs~~is~~~-f~~d---~~ 301 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-----TG--------ECVRKLKGHSDGISGLA-FSPD---GN 301 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-----CC--------eEEEeeeccCCceEEEE-ECCC---CC
Confidence 67899999999999999999999999999999999999 13 35888999999999999 9999 78
Q ss_pred EEEEEECCCeEEEEEcCCCc--cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCe-
Q 000861 956 MFMYSTQNCGIHLWDTRSNS--NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPI- 1032 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~--~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I- 1032 (1249)
.+++++.|+.|++||+.++. +...+........+++++|+|++.++++++.|+.+++||++.+..+..+.. |...+
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~-~~~~~~ 380 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG-HSNLVR 380 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-cCCcce
Confidence 99999999999999999998 444553322111699999999999999999999999999999999888764 44433
Q ss_pred --eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1033 --EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1033 --~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
.+... .+.+. ++++|+.|+.|.+||+.++..++.+.++.
T Consensus 381 ~~~~~~~-~~~~~---------~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----------------------------- 421 (456)
T KOG0266|consen 381 CIFSPTL-STGGK---------LIYSGSEDGSVYVWDSSSGGILQRLEGHS----------------------------- 421 (456)
T ss_pred eEecccc-cCCCC---------eEEEEeCCceEEEEeCCccchhhhhcCCC-----------------------------
Confidence 22223 44554 99999999999999999877666665431
Q ss_pred cccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe--CCCcEEEEeCC
Q 000861 1111 NVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG--TDLKIRRWDHC 1157 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs--~Dg~IriWDl~ 1157 (1249)
...+..+.+++.. ++++++ .|+.|++|...
T Consensus 422 -----------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 -----------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -----------------CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 1267778888888 788877 79999999864
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=261.89 Aligned_cols=254 Identities=17% Similarity=0.284 Sum_probs=222.6
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEE
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIH 908 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~ 908 (1249)
.++..|+..|.++.++|....++++-..|.|.|||.++... ...+....-+|.+..|.+..+.+++|+.|..|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm------VksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM------VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee------eeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 35667999999999999999999999999999999998763 445666677899999999999999999999999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC-ccceeeecCCCCC
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN-SNTWTLKAIPEEG 987 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~-~~~~~l~~~~h~~ 987 (1249)
||+.. ++ ..++.+..|.+.|.+++ .+|. .+++++++.|-.|++||...+ .+.+++ .+|..
T Consensus 81 Vfnyn-----t~--------ekV~~FeAH~DyIR~ia-vHPt---~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~H 141 (794)
T KOG0276|consen 81 VFNYN-----TG--------EKVKTFEAHSDYIRSIA-VHPT---LPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEH 141 (794)
T ss_pred EEecc-----cc--------eeeEEeeccccceeeee-ecCC---CCeEEecCCccEEEEeeccCceeeeeEE--cCcce
Confidence 99998 12 35888999999999999 9998 679999999999999999865 445555 56889
Q ss_pred ceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 988 YVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 988 ~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
.|.+++|.| |.+.+++++.|++|++|.+....+..++. +|...|++++| -+.|. .+++++|+.|..++||
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdy-y~~gd-------kpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDY-YTGGD-------KPYLISGADDLTIKVW 212 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEe-ccCCC-------cceEEecCCCceEEEe
Confidence 999999999 56899999999999999999999999887 79999999999 66664 6899999999999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|+.+.+|++++.+|.. .|.++.|+|.- .++||
T Consensus 213 DyQtk~CV~TLeGHt~-----------------------------------------------Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 213 DYQTKSCVQTLEGHTN-----------------------------------------------NVSFVFFHPELPIIISG 245 (794)
T ss_pred ecchHHHHHHhhcccc-----------------------------------------------cceEEEecCCCcEEEEe
Confidence 9999999999885432 78899999988 99999
Q ss_pred eCCCcEEEEeCCCCCccE
Q 000861 1146 GTDLKIRRWDHCSPGRSY 1163 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~ 1163 (1249)
|+||++|+|+..+-+...
T Consensus 246 sEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred cCCccEEEecCcceehhh
Confidence 999999999987765533
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=251.89 Aligned_cols=277 Identities=18% Similarity=0.218 Sum_probs=230.3
Q ss_pred CCCCCCCCCCccccccCCCCCccC--CCC--cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR--PRG--ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~--~~G--~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
-+.|+++|..+++++.+.+.-+|. +.+ ++..++.+|..+|.-+.||||.+++++|+.|..+++||+.+++.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~----- 303 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL----- 303 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh-----
Confidence 367999999999999888889998 444 57899999999999999999999999999999999999999984
Q ss_pred eeeEee-ccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCC-CcEEEEEEecCCCC
Q 000861 875 SRLTYH-LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKE-GAIVTLVNYNTDNC 952 (1249)
Q Consensus 875 ~~~t~~-~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~-~~V~~l~~fs~d~~ 952 (1249)
+..|. +++..+.+++|.|||..+++|+.|+++..||.+ |++ +..+++-. ..|.+++ ..+|
T Consensus 304 -~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD------gn~--------~~~W~gvr~~~v~dla-it~D-- 365 (519)
T KOG0293|consen 304 -RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD------GNI--------LGNWEGVRDPKVHDLA-ITYD-- 365 (519)
T ss_pred -hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC------cch--------hhcccccccceeEEEE-EcCC--
Confidence 33333 246689999999999999999999999999999 554 23333322 4577888 8999
Q ss_pred CccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCC--
Q 000861 953 ASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVC-- 1030 (1249)
Q Consensus 953 ~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~-- 1030 (1249)
|+.+++.+.|..|++++..+......+. .+.+|++++++.+++++++.-.+..+.+||+.....+..+. ||..
T Consensus 366 -gk~vl~v~~d~~i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~ 440 (519)
T KOG0293|consen 366 -GKYVLLVTVDKKIRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGH 440 (519)
T ss_pred -CcEEEEEecccceeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccc
Confidence 7899999999999999998876654443 46799999999999999999999999999999888887765 3433
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
-|-+-|| .|. +..++++|++|+.|+||+..+|+.+.++.+|..
T Consensus 441 fiIrSCF---gg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~---------------------------- 483 (519)
T KOG0293|consen 441 FIIRSCF---GGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK---------------------------- 483 (519)
T ss_pred eEEEecc---CCC------CcceEEecCCCceEEEEEccCCceeEeecCCcc----------------------------
Confidence 3445556 222 235899999999999999999999888875432
Q ss_pred cccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCC
Q 000861 1111 NVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~ 1159 (1249)
.|+|++|+|.. .+|+||+||+||||.....
T Consensus 484 -------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 -------------------TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred -------------------eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 89999999988 8999999999999988654
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.5e-25 Score=251.17 Aligned_cols=274 Identities=23% Similarity=0.358 Sum_probs=231.9
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
.+.++++|..++..+.+....+|+ .+++....+.+|...+.++.|+|+++++++++.||.|++||+.+++ ...
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~------~~~ 87 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE------CVR 87 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc------ceE
Confidence 566788888877776677789999 5677889999999999999999999999999999999999999865 244
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+..|...|.++.|+++++.+++++.||.|++|++. .++ ....+..|.+.+.++. |+|+ +.++
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~--------~~~~~~~~~~~i~~~~-~~~~---~~~l 150 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGK--------CLTTLRGHTDWVNSVA-FSPD---GTFV 150 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-----CcE--------EEEEeccCCCcEEEEE-EcCc---CCEE
Confidence 667888889999999998888888889999999997 121 3455557888899998 9998 5688
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
++++.+|.|++||+++++....+. .|.+.+.+++|+|+++.+++++.+|.|++||++.+..+..+. .|...+.++.|
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~ 227 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAF 227 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEE
Confidence 888879999999999888877775 477899999999999999999999999999999888888764 47779999999
Q ss_pred EcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccc
Q 000861 1038 FVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR 1117 (1249)
Q Consensus 1038 ~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~ 1117 (1249)
+|++. ++++++.+|.+++||+.+++....+..+
T Consensus 228 -~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~------------------------------------- 260 (289)
T cd00200 228 -SPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGH------------------------------------- 260 (289)
T ss_pred -cCCCc---------EEEEEcCCCcEEEEEcCCceeEEEcccc-------------------------------------
Confidence 99876 6777766999999999987766655521
Q ss_pred ccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1118 VDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1118 ~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
...+.++.|++++ .+++++.||.|++|+
T Consensus 261 ----------~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 ----------TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 1278999999998 999999999999996
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4e-26 Score=239.83 Aligned_cols=304 Identities=14% Similarity=0.179 Sum_probs=237.6
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc------------cccccceeeEeeccCCceEEEEEecCC
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE------------KDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~------------~~~~~~~~~t~~~h~~~V~sl~fspdg 895 (1249)
-..+..|++++.+.+|+|||.++||||.|..|||.|++..- .........++-.|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 35688999999999999999999999999999999997321 111122345677799999999999999
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS 975 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~ 975 (1249)
..|++|+.|++|++||+..... . +..+.+. ...+|.++. |+|. |.+++.|+....+++||+.+.+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--K--------rA~K~~q-d~~~vrsiS-fHPs---GefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--K--------RAFKVFQ-DTEPVRSIS-FHPS---GEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--H--------HHHHHhh-ccceeeeEe-ecCC---CceEEEecCCCceeEEecccee
Confidence 9999999999999999982210 0 0111111 345788898 9999 8899999999999999999988
Q ss_pred cceee-ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCC-CeeEEEEEcCCCCCcccCCCCCE
Q 000861 976 NTWTL-KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVC-PIEKMCLFVPPPNAAVSTTARPL 1053 (1249)
Q Consensus 976 ~~~~l-~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~-~I~~l~~~sp~g~~~~~~~~~~~ 1053 (1249)
+...- ....|.+.|+++.+++.|+..++|+.||.|++||--.++++.++...|++ .|.+..| ..+++ +
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F-tkn~k---------y 319 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF-TKNGK---------Y 319 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE-ccCCe---------E
Confidence 74322 33568899999999999999999999999999999999999999887765 6888888 88888 9
Q ss_pred EEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEE
Q 000861 1054 IYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRS 1133 (1249)
Q Consensus 1054 l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~s 1133 (1249)
+++.+.|..+++|.+.+|+++..+.+....... .--+.
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq------------------------------------------~~rtq 357 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ------------------------------------------KHRTQ 357 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccch------------------------------------------hhhhh
Confidence 999999999999999999999998854221100 00011
Q ss_pred EeecCCC-eEEE-EeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhh
Q 000861 1134 LLPLPGG-DLLT-GGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAA 1211 (1249)
Q Consensus 1134 l~~spdg-~L~t-gs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~ 1211 (1249)
..|.... +++. --..+.+.-||..+......+.
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--------------------------------------------- 392 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--------------------------------------------- 392 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhhhhhcc---------------------------------------------
Confidence 2222222 3332 2345678899998776633321
Q ss_pred cccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1212 ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1212 ~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
-||.+.+..+. -+|.+.-++|||.|-.+++|.
T Consensus 393 -----lgHn~a~R~i~-HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 393 -----LGHNGAVRWIV-HSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred -----cCCCCCceEEE-eCCCCCceeeecccceeeeee
Confidence 27999999998 899999999999999999993
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.3e-27 Score=238.77 Aligned_cols=277 Identities=17% Similarity=0.249 Sum_probs=235.1
Q ss_pred CCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEe
Q 000861 801 PADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY 879 (1249)
Q Consensus 801 ~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~ 879 (1249)
...|+|+.+++.+.|..+.+-+ .+|--|.+|.||+++|.+...+.+...-|+++.|=+-+|||.-++....+
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs------- 96 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS------- 96 (334)
T ss_pred CCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh-------
Confidence 4567999999988877777777 79999999999999999999999988999999999999999999874322
Q ss_pred eccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEE
Q 000861 880 HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 880 ~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s 959 (1249)
..|..-|.+++|+.|.++|++|+.+..++|||++. ...+...+.+|.+.|..+. |... .+.+++
T Consensus 97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~------------p~App~E~~ghtg~Ir~v~-wc~e---D~~iLS 160 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR------------PKAPPKEISGHTGGIRTVL-WCHE---DKCILS 160 (334)
T ss_pred hhhhheeeeEEecccchhhhccchHHHhhhhhccC------------CCCCchhhcCCCCcceeEE-Eecc---CceEEe
Confidence 23667799999999999999999999999999981 1124566778999999998 6655 468888
Q ss_pred EECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEc
Q 000861 960 STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFV 1039 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~s 1039 (1249)
++.|++|++||.+++..++++.. ...|+++.++++|+++.++ ..+.|.+||..+-..++++.. ...|.+... +
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~~---~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~--P~nV~SASL-~ 233 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLEF---NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM--PCNVESASL-H 233 (334)
T ss_pred eccCCceEEEEeccCcEEEEEec---CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC--ccccccccc-c
Confidence 89999999999999999999986 6789999999999877655 467899999999999998764 457888888 9
Q ss_pred CCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccccc
Q 000861 1040 PPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1040 p~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~ 1119 (1249)
|+.. .+++|+.|..++.||+.+|..+..+.
T Consensus 234 P~k~---------~fVaGged~~~~kfDy~TgeEi~~~n----------------------------------------- 263 (334)
T KOG0278|consen 234 PKKE---------FFVAGGEDFKVYKFDYNTGEEIGSYN----------------------------------------- 263 (334)
T ss_pred CCCc---------eEEecCcceEEEEEeccCCceeeecc-----------------------------------------
Confidence 9887 78888889999999999998766541
Q ss_pred ccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCcc
Q 000861 1120 ELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRS 1162 (1249)
Q Consensus 1120 ~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~ 1162 (1249)
.+|...|.|+.|+||| ..++|+.||+||+|.+..++..
T Consensus 264 -----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 264 -----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred -----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 2444589999999999 8999999999999998766543
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1e-25 Score=242.62 Aligned_cols=276 Identities=13% Similarity=0.153 Sum_probs=225.2
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++..+|+-...++++.|...-+|+ .+|.....+.||++.|+++.|+.||.+||||.-+|.|+||+..++.. ..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~------~~ 142 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE------QW 142 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce------EE
Confidence 344556444555555566678999 78999999999999999999999999999999999999999999873 34
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+......|.-+.|+|.++.|+.|+.||.+.+|.+.. + ...+.+.+|..++++-. |.|+ |+.+
T Consensus 143 ~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~-----~--------~~~kv~~Gh~~~ct~G~-f~pd---GKr~ 205 (399)
T KOG0296|consen 143 KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-----Q--------ALCKVMSGHNSPCTCGE-FIPD---GKRI 205 (399)
T ss_pred EeecccCceEEEEecccccEEEeecCCCcEEEEECCC-----c--------ceeeEecCCCCCccccc-ccCC---CceE
Confidence 4544556788999999999999999999999999981 1 24677888999999998 9999 8899
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCC-------------------------------------------------CCCc
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIP-------------------------------------------------EEGY 988 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~-------------------------------------------------h~~~ 988 (1249)
+++..||+|++||+.+++.+..+.... +...
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 999999999999999998877665110 0011
Q ss_pred eEEEEE---cCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEE
Q 000861 989 VSSLVT---GPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSL 1065 (1249)
Q Consensus 989 I~sl~~---spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~v 1065 (1249)
+.|+.+ +..=.+.++|+-||+|.|||+........+ .|..+|.++.| .+ .. +|++++.+|.|+.
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w-~~-t~---------~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKW-LN-TD---------YLLTACANGKVRQ 352 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEE-cC-cc---------hheeeccCceEEe
Confidence 112222 222357889999999999999877776665 47788999999 66 34 7999999999999
Q ss_pred EECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEE
Q 000861 1066 WNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLT 1144 (1249)
Q Consensus 1066 WDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~t 1144 (1249)
||.++|+++.++.+|.. .|.+++++|++ +++|
T Consensus 353 wDaRtG~l~~~y~GH~~-----------------------------------------------~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQM-----------------------------------------------GILDFALSPQKRLVVT 385 (399)
T ss_pred eeccccceEEEEecCch-----------------------------------------------heeEEEEcCCCcEEEE
Confidence 99999999999985443 89999999999 9999
Q ss_pred EeCCCcEEEEeCC
Q 000861 1145 GGTDLKIRRWDHC 1157 (1249)
Q Consensus 1145 gs~Dg~IriWDl~ 1157 (1249)
+|.|++.++|+..
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 9999999999874
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=7e-26 Score=234.52 Aligned_cols=303 Identities=16% Similarity=0.210 Sum_probs=238.3
Q ss_pred cccccccccCCCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000861 788 AKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRK 866 (1249)
Q Consensus 788 i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~ 866 (1249)
+.||.+++. .++|+.+|..+|+.+.|....+|. .+|+.+.++.||+++|.|+..+.+.+.++||+.|.++++||+.+
T Consensus 6 l~GHERplT--qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLT--QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccc--eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 345666655 678999999999999899999999 59999999999999999999999999999999999999999999
Q ss_pred CccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-----CCeEEEEEccccccCCCccccccCccceeeecCCCCcE
Q 000861 867 LEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-----DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 941 (1249)
Q Consensus 867 ~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-----Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V 941 (1249)
++. ..+++. ..+|..+.|+++|++++.++. .+.|.++|+..... ......++..+..+...+
T Consensus 84 Gk~------la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~------~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 84 GKQ------LATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS------DIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred CcE------EEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh------hhcccCceEEecCCccce
Confidence 984 334443 456999999999998877654 47899999983221 112334566777788889
Q ss_pred EEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcc
Q 000861 942 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPV 1021 (1249)
Q Consensus 942 ~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l 1021 (1249)
+... |.|- ++.|++|..+|.|.+||+++|.....-. ..|...|+.+++++|..++++|+.|.+-++||.++...+
T Consensus 151 t~a~-Wg~l---~~~ii~Ghe~G~is~~da~~g~~~v~s~-~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 151 TSAL-WGPL---GETIIAGHEDGSISIYDARTGKELVDSD-EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred eeee-eccc---CCEEEEecCCCcEEEEEcccCceeeech-hhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 9888 9998 7899999999999999999986543221 447889999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe--EEEEECCCCceeEEEecccCCCCCCcccccccccCCC
Q 000861 1022 NSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE--VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPS 1099 (1249)
Q Consensus 1022 ~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~--I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~ 1099 (1249)
+++. ...||++.++ +|... +++.|++... |.-=+.+.|+....|-
T Consensus 226 Kty~--te~PvN~aai-sP~~d---------~VilgGGqeA~dVTTT~~r~GKFEArFy--------------------- 272 (327)
T KOG0643|consen 226 KTYT--TERPVNTAAI-SPLLD---------HVILGGGQEAMDVTTTSTRAGKFEARFY--------------------- 272 (327)
T ss_pred EEee--ecccccceec-ccccc---------eEEecCCceeeeeeeecccccchhhhHH---------------------
Confidence 9986 5679999999 99877 6777765432 2211111121100000
Q ss_pred CCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1100 SRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1100 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
..+-.+++....+|.++|++++|+|+| ..++||.||.||+.-..
T Consensus 273 --------------h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 273 --------------HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred --------------HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 111123445567899999999999999 89999999999998664
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-25 Score=241.45 Aligned_cols=284 Identities=17% Similarity=0.252 Sum_probs=227.3
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC---EEEEEeCCCeEEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA---QVVVGACDGIIHMF 910 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~---~Lasgs~Dg~I~vw 910 (1249)
|.+.|.++... +++++||++||++++||.... ...++.+|.++|.+++|.-... .|++|+.|.++++|
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc-------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 88899998887 679999999999999998865 3678999999999998876443 59999999999999
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC----------------
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN---------------- 974 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~---------------- 974 (1249)
.++ . +.. ....++...+|...|-++. ..++ +..+++|+.|..|.+|+..+.
T Consensus 175 ~~~-~----~~~----~~~~~~~~~GHk~~V~sVs-v~~s---gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 175 KWN-V----GEN----KVKALKVCRGHKRSVDSVS-VDSS---GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred Eec-C----chh----hhhHHhHhcccccceeEEE-ecCC---CCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 998 2 221 1122334458999999998 7777 789999999999999993210
Q ss_pred -------ccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCccc
Q 000861 975 -------SNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 975 -------~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
.........+|.++|.++.|++ ...+++++.|.+|+.||+.++..+.++. ...++.++.+ +|...
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~-~~~~~---- 313 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISY-SPLSK---- 313 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeec-ccccc----
Confidence 0111123367999999999998 6689999999999999999999988765 4557899999 88777
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCC
Q 000861 1048 TTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPR 1127 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~ 1127 (1249)
+|++|+.|..+++||.+++.-..+-... .+|
T Consensus 314 -----Ll~~gssdr~irl~DPR~~~gs~v~~s~--------------------------------------------~gH 344 (423)
T KOG0313|consen 314 -----LLASGSSDRHIRLWDPRTGDGSVVSQSL--------------------------------------------IGH 344 (423)
T ss_pred -----eeeecCCCCceeecCCCCCCCceeEEee--------------------------------------------ecc
Confidence 8999999999999999987432222211 245
Q ss_pred CCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCCC-ccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhH
Q 000861 1128 LLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSPG-RSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTA 1204 (1249)
Q Consensus 1128 ~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~~-~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~ 1204 (1249)
...|.++.|+|.. .|++|+.|+++++||+.+.. ..+.+
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------------------------------- 385 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------------------------------- 385 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee---------------------------------------
Confidence 5589999999988 89999999999999998766 43333
Q ss_pred HHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1205 KAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1205 ~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.+|.|.|.++. | .++.+++|||.|.+|+|++
T Consensus 386 ------------~~h~DKvl~vd-W-~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 386 ------------AGHNDKVLSVD-W-NEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ------------ccCCceEEEEe-c-cCCceEEeccCcceEEEec
Confidence 26899999999 6 3577999999999999974
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=260.20 Aligned_cols=288 Identities=15% Similarity=0.205 Sum_probs=239.5
Q ss_pred CCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeE
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT 878 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t 878 (1249)
++|+|.-+.+.+.-.++.+.+|+ .-|.++..|.+|.++|..++|+|++.+|+||++|..|+||+..+.. +..+
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr------clft 88 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR------CLFT 88 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce------ehhh
Confidence 45667666666655567899999 6799999999999999999999999999999999999999998865 5678
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE
Q 000861 879 YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM 958 (1249)
Q Consensus 879 ~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~ 958 (1249)
+.+|-..|..+.|++.-..++++|.|-+|+||+.. ++ .++..+.+|...|.|.. |+|. ...++
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-----sr--------~~iavltGHnHYVMcAq-Fhpt---EDlIV 151 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-----SR--------KCIAVLTGHNHYVMCAQ-FHPT---EDLIV 151 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEecc-----CC--------ceEEEEecCceEEEeec-cCCc---cceEE
Confidence 89999999999999999999999999999999998 22 35888999999999999 9998 67999
Q ss_pred EEECCCeEEEEEcCCCcc---------------------------ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEE
Q 000861 959 YSTQNCGIHLWDTRSNSN---------------------------TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLT 1011 (1249)
Q Consensus 959 sgs~dg~I~iwDlrt~~~---------------------------~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~ 1011 (1249)
+++-|.+|++||+..-+. +-..-..+|...|.-++|+|.-..+++|+.|..|+
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 999999999999853110 11122357888999999999999999999999999
Q ss_pred EEeCCCCCc--ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcc
Q 000861 1012 LWDLRFLVP--VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMS 1089 (1249)
Q Consensus 1012 lWDlr~~~~--l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~ 1089 (1249)
+|.+...+. +.+ ..+|...|.++.| +|... +|++.++|++|+|||+...+++++++....
T Consensus 232 lWrmnetKaWEvDt-crgH~nnVssvlf-hp~q~---------lIlSnsEDksirVwDm~kRt~v~tfrrend------- 293 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDT-CRGHYNNVSSVLF-HPHQD---------LILSNSEDKSIRVWDMTKRTSVQTFRREND------- 293 (1202)
T ss_pred EEEeccccceeehh-hhcccCCcceEEe-cCccc---------eeEecCCCccEEEEecccccceeeeeccCC-------
Confidence 999864332 223 2479999999999 99887 999999999999999999999999973221
Q ss_pred cccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1090 DLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1090 ~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
..+.++.+|..-|+++|.|+-+.+|.++.....+.+.+.
T Consensus 294 ----------------------------------------RFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n 332 (1202)
T KOG0292|consen 294 ----------------------------------------RFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGN 332 (1202)
T ss_pred ----------------------------------------eEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCC
Confidence 567777788776667777888888888766666666543
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=8e-27 Score=247.98 Aligned_cols=274 Identities=17% Similarity=0.166 Sum_probs=221.9
Q ss_pred CCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCC
Q 000861 806 GLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 884 (1249)
Q Consensus 806 G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~ 884 (1249)
...+.++..|.+.++|+ .+-.+++.|.||++.|.|+.|. .+.+++||.|.+|+|||+++++ +..++-+|..
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge------~l~tlihHce 278 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE------PLNTLIHHCE 278 (499)
T ss_pred chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc------hhhHHhhhcc
Confidence 34455666688999999 5668899999999999999996 5599999999999999999998 4668889999
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCC
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC 964 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg 964 (1249)
.|..+.|+. .++++++.|.++.+||+... +.....+.+.+|...|..+. |+.. ++++++.|.
T Consensus 279 aVLhlrf~n--g~mvtcSkDrsiaVWdm~sp----------s~it~rrVLvGHrAaVNvVd-fd~k-----yIVsASgDR 340 (499)
T KOG0281|consen 279 AVLHLRFSN--GYMVTCSKDRSIAVWDMASP----------TDITLRRVLVGHRAAVNVVD-FDDK-----YIVSASGDR 340 (499)
T ss_pred eeEEEEEeC--CEEEEecCCceeEEEeccCc----------hHHHHHHHHhhhhhheeeec-cccc-----eEEEecCCc
Confidence 999999964 58999999999999999811 12234566788999999988 7654 999999999
Q ss_pred eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCC
Q 000861 965 GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1044 (1249)
Q Consensus 965 ~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~ 1044 (1249)
+|++|++.+++.+.++ .+|...|-|+.+ .++++++|++|.+|++||+..|.+++.+. ||+.-|.++.| +.+
T Consensus 341 TikvW~~st~efvRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF---d~k- 411 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF---DNK- 411 (499)
T ss_pred eEEEEeccceeeehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee---cCc-
Confidence 9999999999999888 568999988876 47899999999999999999999999976 69999999999 444
Q ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCC
Q 000861 1045 AVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEP 1124 (1249)
Q Consensus 1045 ~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~ 1124 (1249)
.+++|+.||+|++||+.++........ .+ -+...
T Consensus 412 --------rIVSGaYDGkikvWdl~aaldpra~~~----------~~----------------------------Cl~~l 445 (499)
T KOG0281|consen 412 --------RIVSGAYDGKIKVWDLQAALDPRAPAS----------TL----------------------------CLRTL 445 (499)
T ss_pred --------eeeeccccceEEEEecccccCCccccc----------ch----------------------------HHHhh
Confidence 699999999999999987642211110 00 00111
Q ss_pred CCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCcc
Q 000861 1125 PPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRS 1162 (1249)
Q Consensus 1125 ~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~ 1162 (1249)
..|.+.|..+.| |. .+++++.|.+|.+||+.++...
T Consensus 446 v~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 446 VEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 234447777777 34 7899999999999999876553
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-24 Score=224.58 Aligned_cols=297 Identities=16% Similarity=0.264 Sum_probs=229.7
Q ss_pred EeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEE
Q 000861 830 HLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHM 909 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~v 909 (1249)
-|+||..+++.+.++.+|.+|.||+.|.+..||-...++. .-+|.+|.+.|+|+....+.+.+++|+.|.++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce------eeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 4789999999999999999999999999999999988884 6699999999999999999999999999999999
Q ss_pred EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-----CCeEEEEEcCC-------Cccc
Q 000861 910 FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-----NCGIHLWDTRS-------NSNT 977 (1249)
Q Consensus 910 wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-----dg~I~iwDlrt-------~~~~ 977 (1249)
||+. .|+. +..++ ...+|..+. |+.+ |++++.++. .+.|.++|++. .++.
T Consensus 79 WDv~-----tGk~--------la~~k-~~~~Vk~~~-F~~~---gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 79 WDVE-----TGKQ--------LATWK-TNSPVKRVD-FSFG---GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred EEcC-----CCcE--------EEEee-cCCeeEEEe-eccC---CcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999 3442 33343 345677777 9998 667777654 47899999993 3334
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
..+ +.+.+.++.+.|+|.+.++++|..||.|..||.+++..+..-...|...|+.|++ +|+.. +++++
T Consensus 141 ~kI--~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d~T---------~FiT~ 208 (327)
T KOG0643|consen 141 LKI--PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRDRT---------YFITG 208 (327)
T ss_pred EEe--cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc-cCCcc---------eEEec
Confidence 444 4467899999999999999999999999999999986554444458889999999 99998 99999
Q ss_pred ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec
Q 000861 1058 AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL 1137 (1249)
Q Consensus 1058 s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 1137 (1249)
+.|.+-++||+.+.++++++.... +|++.+++
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~------------------------------------------------PvN~aais 240 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTER------------------------------------------------PVNTAAIS 240 (327)
T ss_pred ccCccceeeeccceeeEEEeeecc------------------------------------------------cccceecc
Confidence 999999999999999999887421 67788888
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhccccc
Q 000861 1138 PGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSA 1216 (1249)
Q Consensus 1138 pdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l 1216 (1249)
|-. .++.||.-.- -|+.+... -.|.- ...+|+ .+........
T Consensus 241 P~~d~VilgGGqeA---~dVTTT~~---r~GKF-----EArFyh--------------------------~i~eEEigrv 283 (327)
T KOG0643|consen 241 PLLDHVILGGGQEA---MDVTTTST---RAGKF-----EARFYH--------------------------LIFEEEIGRV 283 (327)
T ss_pred cccceEEecCCcee---eeeeeecc---cccch-----hhhHHH--------------------------HHHHHHhccc
Confidence 866 5555442211 11111000 00000 011110 1111122356
Q ss_pred CCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1217 GCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1217 ~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
++|-++|++++ |+|+|+..+||+.||.|++.
T Consensus 284 kGHFGPINsvA-fhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 284 KGHFGPINSVA-FHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccCcceeE-ECCCCcccccCCCCceEEEE
Confidence 79999999999 99999999999999999973
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.2e-25 Score=249.86 Aligned_cols=245 Identities=15% Similarity=0.214 Sum_probs=217.5
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.++|.-+....+-+.+...+|+ .+-.++..+.-..-+|.+..|-+..+++++||+|..|+||+..++++ ..
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek------V~ 91 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK------VK 91 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee------eE
Confidence 566777766666655567889999 77889999998899999999999999999999999999999999985 56
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
+|..|...|.|++.+|.-.+++++|.|-+|++||.+ + +..+.+++++|+..|.+++ |+|.. .+.+
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we------~------~wa~~qtfeGH~HyVMqv~-fnPkD--~ntF 156 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE------N------EWACEQTFEGHEHYVMQVA-FNPKD--PNTF 156 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeecc------C------ceeeeeEEcCcceEEEEEE-ecCCC--ccce
Confidence 899999999999999999999999999999999999 2 3346788999999999999 99985 4599
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC--CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG--NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg--~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
++++-|++|++|.+.+..+..+++ +|...|.|+++-+.| .+|++|+.|.++++||..+..|++++. ||...|..+
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~--gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v 233 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLE--GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFV 233 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeee--ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEE
Confidence 999999999999999988888885 699999999998854 799999999999999999999999986 699999999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEE
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l 1077 (1249)
+| +|.-. .+++|++||++++|+..+-+...++
T Consensus 234 ~f-hp~lp---------iiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 234 FF-HPELP---------IIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred Ee-cCCCc---------EEEEecCCccEEEecCcceehhhhh
Confidence 99 99876 9999999999999998776554444
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.9e-25 Score=259.77 Aligned_cols=257 Identities=16% Similarity=0.207 Sum_probs=220.8
Q ss_pred EeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEE
Q 000861 830 HLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHM 909 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~v 909 (1249)
.|..-+..|..++|+|...++.++-..|.|.+||.+-+. ....|..|.++|..++|+|....+++|+.|-.|+|
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh------HHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence 345566789999999999999999999999999999876 35578899999999999999999999999999999
Q ss_pred EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCce
Q 000861 910 FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYV 989 (1249)
Q Consensus 910 wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I 989 (1249)
|+.. . .+++.++.+|-+.|..+. |++. -.++++++.|.+|+||+..+++++..+. +|...|
T Consensus 78 WnYk-~------------rrclftL~GHlDYVRt~~-FHhe---yPWIlSASDDQTIrIWNwqsr~~iavlt--GHnHYV 138 (1202)
T KOG0292|consen 78 WNYK-T------------RRCLFTLLGHLDYVRTVF-FHHE---YPWILSASDDQTIRIWNWQSRKCIAVLT--GHNHYV 138 (1202)
T ss_pred Eecc-c------------ceehhhhccccceeEEee-ccCC---CceEEEccCCCeEEEEeccCCceEEEEe--cCceEE
Confidence 9998 1 235677888999999998 9998 6699999999999999999999999884 588899
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEeCCCCC----------------------------cccccccCCCCCeeEEEEEcCC
Q 000861 990 SSLVTGPCGNWFVSGSSRGVLTLWDLRFLV----------------------------PVNSWQYSQVCPIEKMCLFVPP 1041 (1249)
Q Consensus 990 ~sl~~spdg~~L~sgs~dG~I~lWDlr~~~----------------------------~l~s~~~~~~~~I~~l~~~sp~ 1041 (1249)
.|..|+|....+++++-|.+|++||+.--+ .++..-.||...|+-++| +|.
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf-hpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF-HPT 217 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe-cCC
Confidence 999999999999999999999999984200 112223368888999999 988
Q ss_pred CCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccccccc
Q 000861 1042 PNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDEL 1121 (1249)
Q Consensus 1042 g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~ 1121 (1249)
-. ++++|+.|+.|++|.+... +.|+.
T Consensus 218 lp---------liVSG~DDRqVKlWrmnet---------------------------------------------KaWEv 243 (1202)
T KOG0292|consen 218 LP---------LIVSGADDRQVKLWRMNET---------------------------------------------KAWEV 243 (1202)
T ss_pred cc---------eEEecCCcceeeEEEeccc---------------------------------------------cceee
Confidence 76 8999999999999987532 35666
Q ss_pred CCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEe
Q 000861 1122 NEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1122 ~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
....+|.+.|.++.|+|.. .+++.|+|++||+||+...+.+.++.
T Consensus 244 DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 7778899999999999987 99999999999999999877766663
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.7e-26 Score=232.64 Aligned_cols=283 Identities=17% Similarity=0.259 Sum_probs=238.2
Q ss_pred EeccccCceeEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe
Q 000861 830 HLQEHCSAVNEIAISH---DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI 906 (1249)
Q Consensus 830 ~L~~H~~~V~~la~sp---dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~ 906 (1249)
+-.||+.+|..++||| +|-||++++.||.-.+-+-+++.. .-+|.+|.+.|++.+...+...-++++.|-+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw------igtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW------IGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc------EEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 5679999999999985 888999999999988888888875 4589999999999999988888899999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
-++||.- +|. .+..+. |..-|..++ |+.| .+.|++|+.+..+++||+...+-. ..+..+|.
T Consensus 83 akvw~a~-----tgd--------elhsf~-hkhivk~~a-f~~d---s~~lltgg~ekllrvfdln~p~Ap-p~E~~ght 143 (334)
T KOG0278|consen 83 AKVWDAV-----TGD--------ELHSFE-HKHIVKAVA-FSQD---SNYLLTGGQEKLLRVFDLNRPKAP-PKEISGHT 143 (334)
T ss_pred hhhhhhh-----hhh--------hhhhhh-hhheeeeEE-eccc---chhhhccchHHHhhhhhccCCCCC-chhhcCCC
Confidence 9999987 232 123332 556677787 9999 679999999999999999876432 23446799
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
+.|..+.|....+.+++.+.|++|++||.|++..++++.. ..+|+++.+ +++|. +++.+..+.|.+|
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEv-s~dG~----------ilTia~gssV~Fw 210 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEV-SQDGR----------ILTIAYGSSVKFW 210 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceee-ccCCC----------EEEEecCceeEEe
Confidence 9999999999888999999999999999999999999874 458999999 99997 6777778899999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|..+...++.+... ..|.+...+|+. .+++|
T Consensus 211 daksf~~lKs~k~P------------------------------------------------~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMP------------------------------------------------CNVESASLHPKKEFFVAG 242 (334)
T ss_pred ccccccceeeccCc------------------------------------------------cccccccccCCCceEEec
Confidence 99887766665521 156777788888 99999
Q ss_pred eCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeE
Q 000861 1146 GTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILS 1225 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~ 1225 (1249)
+.|+.++.||..+++.+-.. .++|.++|.|
T Consensus 243 ged~~~~kfDy~TgeEi~~~--------------------------------------------------nkgh~gpVhc 272 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSY--------------------------------------------------NKGHFGPVHC 272 (334)
T ss_pred CcceEEEEEeccCCceeeec--------------------------------------------------ccCCCCceEE
Confidence 99999999999998774432 1379999999
Q ss_pred EEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1226 LGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1226 la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+. |+|+|..-++||.||+|++|.
T Consensus 273 Vr-FSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 273 VR-FSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EE-ECCCCceeeccCCCceEEEEE
Confidence 99 999999999999999999994
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=4.1e-25 Score=238.93 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=230.2
Q ss_pred CCCccccccCCCCCccCCCCcEEEEeccccCceeEEEEcCCC---CEEEEEECCCcEEEEECCCCccccccceeeEeecc
Q 000861 806 GLPSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDH---SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLE 882 (1249)
Q Consensus 806 G~~~~~~s~~~~~~~W~~~G~lv~~L~~H~~~V~~la~spdg---~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h 882 (1249)
+..++++++|+..++|+..|+.+.++.||.++|.+++|.-.. ..|++||.|.++++|.++.++.... ......||
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--~~~~~~GH 192 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--ALKVCRGH 192 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--HHhHhccc
Confidence 456788888999999999999999999999999988886433 3699999999999999988764322 22334599
Q ss_pred CCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCc-c-----------ccccCccceeeecCCCCcEEEEEEecCC
Q 000861 883 GSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGN-V-----------EKYSGISDIKKKDTKEGAIVTLVNYNTD 950 (1249)
Q Consensus 883 ~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~-~-----------~~~~~~~~i~~l~~h~~~V~~l~~fs~d 950 (1249)
...|.++...++|..+++|+.|.+|.+|+.........+ . ..-....++..+.+|.++|.++. |++.
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~-w~d~ 271 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV-WSDA 271 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE-EcCC
Confidence 999999999999999999999999999994321110000 0 01111235778899999999999 8775
Q ss_pred CCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC--cccccccCC
Q 000861 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV--PVNSWQYSQ 1028 (1249)
Q Consensus 951 ~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~--~l~s~~~~~ 1028 (1249)
..+++++.|.+|+.||+.++....++.. ...+.|+.++|..++|++|+.|..+++||.|++. .+..-..+|
T Consensus 272 ----~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 272 ----TVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred ----CceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence 3899999999999999999999887764 6689999999999999999999999999999753 333223479
Q ss_pred CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCcc
Q 000861 1029 VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTD 1107 (1249)
Q Consensus 1029 ~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~d 1107 (1249)
...|.++.| +|... ..+++++.||++++||+++.+ .+..+.+
T Consensus 345 ~nwVssvkw-sp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~---------------------------- 387 (423)
T KOG0313|consen 345 KNWVSSVKW-SPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAG---------------------------- 387 (423)
T ss_pred hhhhhheec-CCCCc--------eEEEEEecCCeEEEEEeccCCCcceeecc----------------------------
Confidence 999999999 98875 578889999999999998765 4444442
Q ss_pred ccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCC
Q 000861 1108 LRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1108 g~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~ 1157 (1249)
|...|.++.|...+.+++||.|.+|+++.-.
T Consensus 388 -------------------h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 388 -------------------HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -------------------CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 3338999999877799999999999998754
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.7e-26 Score=247.78 Aligned_cols=290 Identities=13% Similarity=0.168 Sum_probs=242.0
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEE
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIH 908 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~ 908 (1249)
..+..|.+.|+.+.|-++...|+||+.|..|++|+...... ....++.+..+.|+++.|.++++++++++.|+.++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~----~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS----ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----hhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 35677999999999999988999999999999999876552 12446777788999999999999999999999999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCc
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGY 988 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~ 988 (1249)
+|+++ .. ....++.+|.+.|+++. |... ...+++|+.|.+|+.||+....+..++-. ...
T Consensus 245 ~Wnvd-----~~--------r~~~TLsGHtdkVt~ak-~~~~---~~~vVsgs~DRtiK~WDl~k~~C~kt~l~---~S~ 304 (459)
T KOG0288|consen 245 LWNVD-----SL--------RLRHTLSGHTDKVTAAK-FKLS---HSRVVSGSADRTIKLWDLQKAYCSKTVLP---GSQ 304 (459)
T ss_pred eeecc-----ch--------hhhhhhcccccceeeeh-hhcc---ccceeeccccchhhhhhhhhhheeccccc---ccc
Confidence 99998 12 24667888999999998 7665 33599999999999999999887766532 445
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 989 VSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 989 I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
+..++.+ ...+++|..|+.|++||.|...+..+.. ..+.|+++.. ++++. .+.+++.|+.+.+.|+
T Consensus 305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~l-s~~g~---------~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDL-SMDGL---------ELLSSSRDDTLKVIDL 370 (459)
T ss_pred ccceEec--ceeeeecccccceEEEeccCCceeeEee--cCcceeeEee-ccCCe---------EEeeecCCCceeeeec
Confidence 5666665 5578999999999999999999998865 4458999999 99988 8899999999999999
Q ss_pred CCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeC
Q 000861 1069 ENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGT 1147 (1249)
Q Consensus 1069 ~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~ 1147 (1249)
++....+++....... + ...+.+.|||++ |+++||.
T Consensus 371 Rt~eI~~~~sA~g~k~-----------------------------------------a--sDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKC-----------------------------------------A--SDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred ccccEEEEeecccccc-----------------------------------------c--cccceeEECCCCceeeeccC
Confidence 9999888887432211 0 146789999999 9999999
Q ss_pred CCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEE
Q 000861 1148 DLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLG 1227 (1249)
Q Consensus 1148 Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la 1227 (1249)
||.|+||++.+++..++++++. -...|++++
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~-------------------------------------------------s~~aI~s~~ 438 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLST-------------------------------------------------SNAAITSLS 438 (459)
T ss_pred CCcEEEEEccCceEEEEeccCC-------------------------------------------------CCcceEEEE
Confidence 9999999999999888776543 122799999
Q ss_pred eeecCCCEEEEEeCCCeEEEcC
Q 000861 1228 SVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1228 ~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|+|.|..|++++.++.+.+|.
T Consensus 439 -W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 -WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -EcCCCchhhcccCCcceEecC
Confidence 999999999999999999995
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=5.1e-25 Score=232.01 Aligned_cols=273 Identities=19% Similarity=0.207 Sum_probs=223.8
Q ss_pred CCCCCCCCCCccccccCCCCCccCCCC--cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRPRG--ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~~G--~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
..+|+|+|..+++++.|..+-+|+.-| +-...+++|+++|..+.|.+|++.++++|.|.+|+.||+++++. .
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~------~ 125 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR------I 125 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee------e
Confidence 567999999999988888899999544 55778999999999999999999999999999999999999984 4
Q ss_pred eEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 877 LTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
..+.+|..-|.++.-+.-| ..+.+|+.||++++||++. .. .++++. ....++++. |... +.
T Consensus 126 rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-----k~--------~~~t~~-~kyqltAv~-f~d~---s~ 187 (338)
T KOG0265|consen 126 RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-----KE--------AIKTFE-NKYQLTAVG-FKDT---SD 187 (338)
T ss_pred ehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-----cc--------hhhccc-cceeEEEEE-eccc---cc
Confidence 5677899988888855444 4667889999999999981 11 222222 345688888 8887 67
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC----CcccccccC-CC-
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL----VPVNSWQYS-QV- 1029 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~----~~l~s~~~~-~~- 1029 (1249)
.+.+|+-|+.|++||+|.+...+++ .+|.+.|+.+..+++|.++.+-+.|.++++||+|.. +++..+... |.
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~l--sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTL--SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ceeeccccCceeeeccccCcceEEe--ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 9999999999999999999998888 569999999999999999999999999999999853 334444321 22
Q ss_pred -CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccc
Q 000861 1030 -CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDL 1108 (1249)
Q Consensus 1030 -~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg 1108 (1249)
.....+.| +|++. .+-+|+.|..+++||.....++..+.+
T Consensus 266 eknlL~csw-sp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpG----------------------------- 306 (338)
T KOG0265|consen 266 EKNLLKCSW-SPNGT---------KITAGSADRFVYVWDTTSRRILYKLPG----------------------------- 306 (338)
T ss_pred hhhcceeec-cCCCC---------ccccccccceEEEeecccccEEEEcCC-----------------------------
Confidence 23456678 89888 888999999999999987777666653
Q ss_pred cccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEE
Q 000861 1109 RRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRW 1154 (1249)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriW 1154 (1249)
|...|.++.|+|.. .|.+++.|.+|++=
T Consensus 307 ------------------h~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 307 ------------------HYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ------------------cceeEEEeeecCCCcEEEEeccCceeEee
Confidence 33489999999999 99999999999863
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=249.53 Aligned_cols=275 Identities=17% Similarity=0.257 Sum_probs=225.6
Q ss_pred CCCCCC-CCCCccccccCCCCCccC--CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccce
Q 000861 799 SSPADL-TGLPSFVRTSSIPDSGWR--PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 799 ~~~~s~-~G~~~~~~s~~~~~~~W~--~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~ 875 (1249)
++.+.| .|.++.+.+.|..+.+|+ ..|.++++|.||..+|.+++|+++|..|.|+|.|+.+++||+++|..
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~------ 292 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV------ 292 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE------
Confidence 455555 677777887788899999 46999999999999999999999999999999999999999999974
Q ss_pred eeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc
Q 000861 876 RLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
...+.. ...++|+.|.|++ +.+++|+.|+.|+.||++ .+++ ++.+..|-+.|..+. |-++ +
T Consensus 293 ~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-----s~kv--------vqeYd~hLg~i~~i~-F~~~---g 354 (503)
T KOG0282|consen 293 LSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-----SGKV--------VQEYDRHLGAILDIT-FVDE---G 354 (503)
T ss_pred EEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc-----chHH--------HHHHHhhhhheeeeE-EccC---C
Confidence 222322 3368999999988 899999999999999999 3443 677778999999999 9998 7
Q ss_pred cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC--CCcccccccCCC--C
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF--LVPVNSWQYSQV--C 1030 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~--~~~l~s~~~~~~--~ 1030 (1249)
..+++++.|+++++|+.+.+-.+..+. ..+.-...|+..+|++.|++.-+.|..|.++.+.. ....+....+|. +
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 899999999999999999887654432 23455778999999999999999999999998753 222222223453 3
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
.-..+.| +|||. +|++|.+||.+.+||..+-+....+..+.
T Consensus 434 ys~~v~f-SpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~----------------------------- 474 (503)
T KOG0282|consen 434 YSCQVDF-SPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHD----------------------------- 474 (503)
T ss_pred ceeeEEE-cCCCC---------eEEeecCCccEEEeechhhhhhhccccCC-----------------------------
Confidence 4467788 99998 99999999999999999887766666432
Q ss_pred cccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEe
Q 000861 1111 NVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWD 1155 (1249)
..+..+.|+|.. .++|+|.||.|++||
T Consensus 475 ------------------~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 ------------------QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------------cceEEEEecCCCcceeEecccCceeEecC
Confidence 278889999987 999999999999997
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=221.39 Aligned_cols=244 Identities=16% Similarity=0.203 Sum_probs=208.9
Q ss_pred CCCCCCCCCCccccccCCCCCccCC-CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRP-RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~-~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.|+-+|......+.+.+.++|+| +|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.+++. ..
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv------~R 95 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV------DR 95 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee------ee
Confidence 5678889998888777889999995 8999999999999999999999999999999999999999999984 55
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+.+|.+.|..+.|..+...+++|+.|.++++||.+. ...++++.+......|.++. .... .+
T Consensus 96 r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS-----------~s~ePiQildea~D~V~Si~-v~~h-----eI 158 (307)
T KOG0316|consen 96 RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS-----------RSFEPIQILDEAKDGVSSID-VAEH-----EI 158 (307)
T ss_pred ecccccceeeEEEecCcceEEEeccccceeEEEEccc-----------CCCCccchhhhhcCceeEEE-eccc-----EE
Confidence 7889999999999999999999999999999999881 12346777777788898887 5544 89
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
++|+.||+++.||+|.|+..... -..+|+|++|+++++..+.++.|+++++.|-.+|+.++++. +|...-..+..
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc 233 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDC 233 (307)
T ss_pred EeeccCCcEEEEEeecceeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeee
Confidence 99999999999999999765433 35689999999999999999999999999999999999987 57665444443
Q ss_pred E-cCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1038 F-VPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1038 ~-sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
+ .... ..++.|++||.|.+||+.+...+..+..
T Consensus 234 ~l~qsd---------thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 234 CLNQSD---------THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eecccc---------eeEEeccCCceEEEEEeccceeeeeecc
Confidence 1 3332 3799999999999999998887766653
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=250.71 Aligned_cols=286 Identities=14% Similarity=0.179 Sum_probs=240.5
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.++.+...+++++ ..+..+|+ .+++++.++... -+.+..|.|.++++++|...|.+.++|+..... ..
T Consensus 378 sl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------~E 448 (888)
T KOG0306|consen 378 SLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL------VE 448 (888)
T ss_pred EEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh------hh
Confidence 455666666666665 56789999 679999999844 899999999999999999999999999998763 34
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
+...|.+.|++++.+||+..+++||.|.+|++||........|...+.-....-++++ -+..|.|+. ++|| ++++
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~-~Spd---gk~L 523 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVS-VSPD---GKLL 523 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEE-EcCC---CcEE
Confidence 6678999999999999999999999999999999874332122212222222223333 356799998 9999 8899
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
+++--|++|++|-+.+.+..-.+ .+|.-+|.|+.++||++.++||+.|..|++|-+.+|.|-+++. +|...|.++.|
T Consensus 524 aVsLLdnTVkVyflDtlKFflsL--YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F 600 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSL--YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQF 600 (888)
T ss_pred EEEeccCeEEEEEecceeeeeee--cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEE
Confidence 99999999999999988765444 7899999999999999999999999999999999999999975 69999999999
Q ss_pred EcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccc
Q 000861 1038 FVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR 1117 (1249)
Q Consensus 1038 ~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~ 1117 (1249)
.|... .+++|+.|+.|+-||-+...+++.+.+|.
T Consensus 601 -~P~~~---------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~------------------------------------ 634 (888)
T KOG0306|consen 601 -LPKTH---------LFFTCGKDGKVKQWDGEKFEEIQKLDGHH------------------------------------ 634 (888)
T ss_pred -cccce---------eEEEecCcceEEeechhhhhhheeeccch------------------------------------
Confidence 89776 89999999999999999888888877433
Q ss_pred ccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1118 VDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1118 ~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
..|+|++.+|+| +++++|.|..||+|.-..
T Consensus 635 -----------~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 -----------SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -----------heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 289999999999 999999999999998765
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=238.09 Aligned_cols=283 Identities=18% Similarity=0.294 Sum_probs=221.8
Q ss_pred EEEEeccccCceeEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCC
Q 000861 827 LVAHLQEHCSAVNEIAISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDG 905 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg 905 (1249)
.++.|.||.+.|.|++=+|.. ..++||+.||.|+|||+...+ +..++..|.+.|..+++.. ..+++++.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh------hhheeecccCceeeEEecc--cceEEecCCc
Confidence 577889999999999999987 789999999999999999877 4668999999999999987 6788999999
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
+|+.|.++ +. +++++.+ .+.+..+. -+.. +..+++++. .|.|||..-..++..+.. .
T Consensus 130 tvK~wk~~------~~--------p~~tilg-~s~~~gId-h~~~---~~~FaTcGe--~i~IWD~~R~~Pv~smsw--G 186 (433)
T KOG0268|consen 130 TVKQWKID------GP--------PLHTILG-KSVYLGID-HHRK---NSVFATCGE--QIDIWDEQRDNPVSSMSW--G 186 (433)
T ss_pred ceeeeecc------CC--------cceeeec-cccccccc-cccc---cccccccCc--eeeecccccCCccceeec--C
Confidence 99999998 32 2344432 23344444 2222 236666654 699999988888887764 4
Q ss_pred CCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEE
Q 000861 986 EGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVS 1064 (1249)
Q Consensus 986 ~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~ 1064 (1249)
...|.++.|+|-. ..|++|.+|+.|.+||+|.+.+++.... ...-+.++| +|.+- -+.+|.+|..++
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~Isw-nPeaf---------nF~~a~ED~nlY 254 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICW-NPEAF---------NFVAANEDHNLY 254 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceec-Ccccc---------ceeeccccccce
Confidence 6789999999965 6777788999999999999999988753 446688999 99654 577788899999
Q ss_pred EEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEE
Q 000861 1065 LWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLL 1143 (1249)
Q Consensus 1065 vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~ 1143 (1249)
.||++..+. .+.. ..+|...|..+.|+|.| -++
T Consensus 255 ~~DmR~l~~--p~~v--------------------------------------------~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 255 TYDMRNLSR--PLNV--------------------------------------------HKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred ehhhhhhcc--cchh--------------------------------------------hcccceeEEEeccCCCcchhc
Confidence 999975431 1111 13444589999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccce
Q 000861 1144 TGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSI 1223 (1249)
Q Consensus 1144 tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I 1223 (1249)
+||.|.+||||.+..+.. +..|++ .--..|
T Consensus 289 sgsyDksIRIf~~~~~~S--------------RdiYht------------------------------------kRMq~V 318 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHS--------------RDIYHT------------------------------------KRMQHV 318 (433)
T ss_pred cccccceEEEeecCCCcc--------------hhhhhH------------------------------------hhhhee
Confidence 999999999999976543 223311 112358
Q ss_pred eEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1224 LSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1224 ~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.|+. |+.|.++++|||+||.|++|+
T Consensus 319 ~~Vk-~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 319 FCVK-YSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred eEEE-EeccccEEEecCCCcceeeee
Confidence 9999 999999999999999999996
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.5e-23 Score=271.92 Aligned_cols=286 Identities=18% Similarity=0.175 Sum_probs=220.7
Q ss_pred CCCCCCCCCCccccccCCCCCccCCC-----Cc----EEEEeccccCceeEEEEcCC-CCEEEEEECCCcEEEEECCCCc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRPR-----GI----LVAHLQEHCSAVNEIAISHD-HSFFVSASDDSTVKVWDSRKLE 868 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~~-----G~----lv~~L~~H~~~V~~la~spd-g~~laTgs~DgtVkIWD~~~~~ 868 (1249)
.+.|+++|..+++++.+...++|+.+ +. ++..+.+ ...|.+++|+|. +.+|++|+.||+|++||+.+++
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~ 566 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ 566 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe
Confidence 57789999988888878889999842 11 2334443 468999999874 7899999999999999998875
Q ss_pred cccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEe
Q 000861 869 KDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNY 947 (1249)
Q Consensus 869 ~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~f 947 (1249)
....+.+|.+.|++++|+| ++.+|++|+.||+|++||+. . +. .+..+..+ ..+.++. |
T Consensus 567 ------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~----~~--------~~~~~~~~-~~v~~v~-~ 625 (793)
T PLN00181 567 ------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-Q----GV--------SIGTIKTK-ANICCVQ-F 625 (793)
T ss_pred ------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-C----Cc--------EEEEEecC-CCeEEEE-E
Confidence 3557788999999999997 78999999999999999998 1 22 23344433 5688887 7
Q ss_pred cCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC------Cc
Q 000861 948 NTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL------VP 1020 (1249)
Q Consensus 948 s~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~------~~ 1020 (1249)
.+.. +..+++|+.||.|++||+++++. ...+ .+|...|+++.|. ++.++++|+.||.|++||++.+ .+
T Consensus 626 ~~~~--g~~latgs~dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 626 PSES--GRSLAFGSADHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred eCCC--CCEEEEEeCCCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 5432 67999999999999999998753 4444 4688999999997 6789999999999999999753 45
Q ss_pred ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCC
Q 000861 1021 VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSS 1100 (1249)
Q Consensus 1021 l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~ 1100 (1249)
+..+. +|...+..+.| +|++. ++++|+.|+.|++|+...+.....+...... .+..+
T Consensus 701 l~~~~-gh~~~i~~v~~-s~~~~---------~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~---~~~~~--------- 757 (793)
T PLN00181 701 LHSFM-GHTNVKNFVGL-SVSDG---------YIATGSETNEVFVYHKAFPMPVLSYKFKTID---PVSGL--------- 757 (793)
T ss_pred eEEEc-CCCCCeeEEEE-cCCCC---------EEEEEeCCCEEEEEECCCCCceEEEecccCC---ccccc---------
Confidence 55554 58888999999 99887 9999999999999998766544333311100 00000
Q ss_pred CCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeC
Q 000861 1101 RSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1101 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl 1156 (1249)
....+...|.+++|++++ .|++|+.||.|++|++
T Consensus 758 ----------------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 ----------------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ----------------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 001233479999999999 9999999999999996
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=240.19 Aligned_cols=307 Identities=18% Similarity=0.197 Sum_probs=232.0
Q ss_pred CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcc-ccccceeeEeeccCCceEEEEEecCCCEEEEEe
Q 000861 824 RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEK-DISFRSRLTYHLEGSRALCTMMLRHSAQVVVGA 902 (1249)
Q Consensus 824 ~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~-~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs 902 (1249)
.+..-.+|++|+..|.++++.|.|..|+|||.|.+|++||+..+.. ...|+... ......|.++.|++.|..|++.+
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCCCCeEEEEe
Confidence 3556678999999999999999999999999999999999998763 22333332 33445699999999999999999
Q ss_pred CCCeEEEEEccccccCCCcc--ccccCc---cceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-
Q 000861 903 CDGIIHMFSVDHISRGLGNV--EKYSGI---SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN- 976 (1249)
Q Consensus 903 ~Dg~I~vwdv~~~~~~~g~~--~~~~~~---~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~- 976 (1249)
.....+++|-+ |.. .-..|. ..+..-++|...++|.+ |+|.+ ...+++++.||++++||+...+.
T Consensus 234 g~aqakl~DRd------G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~-whP~~--k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 234 GSAQAKLLDRD------GFEIVEFSKGDQYIRDMYNTKGHIAELTCGC-WHPDN--KEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred cCcceeEEccC------CceeeeeeccchhhhhhhccCCceeeeeccc-cccCc--ccceEEecCCCcEEEEecCCchhh
Confidence 99999999987 322 112222 23444567888899998 99997 45999999999999999976543
Q ss_pred ceeeec---CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC--CcccccccCCCC--CeeEEEEEcCCCCCcccCC
Q 000861 977 TWTLKA---IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL--VPVNSWQYSQVC--PIEKMCLFVPPPNAAVSTT 1049 (1249)
Q Consensus 977 ~~~l~~---~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~--~~l~s~~~~~~~--~I~~l~~~sp~g~~~~~~~ 1049 (1249)
...++. .+..-.+++++|+++|.++++|+.||.|.+||.+.. .+...+...|.. .|+++.| +++|+
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F-S~dg~------ 377 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF-SYDGN------ 377 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe-ccccc------
Confidence 334432 234457899999999999999999999999998643 334444445655 8999999 99998
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCC
Q 000861 1050 ARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRL 1128 (1249)
Q Consensus 1050 ~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~ 1128 (1249)
+|++-+.|+++++||++..+ ++.+..+... .
T Consensus 378 ---~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t---------------------------------------------~ 409 (641)
T KOG0772|consen 378 ---YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT---------------------------------------------P 409 (641)
T ss_pred ---hhhhccCCCceeeeeccccccchhhhcCCCc---------------------------------------------c
Confidence 89999999999999998653 2222221100 0
Q ss_pred CCeEEEeecCCC-eEEEEeC------CCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccch
Q 000861 1129 LGIRSLLPLPGG-DLLTGGT------DLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSK 1201 (1249)
Q Consensus 1129 ~~V~sl~~spdg-~L~tgs~------Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~ 1201 (1249)
..-+.++|||+. .|+||.. .|.+.+||..+.+.++.+.-.
T Consensus 410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--------------------------------- 456 (641)
T KOG0772|consen 410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--------------------------------- 456 (641)
T ss_pred CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---------------------------------
Confidence 144678899999 8888753 578999998877776655311
Q ss_pred hhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1202 LTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1202 ~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
...|..+. |+|.-+.|+.|+.||+++||
T Consensus 457 ------------------~aSvv~~~-WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 457 ------------------TASVVRCL-WHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ------------------CceEEEEe-ecchhhheeeecCCCceEEE
Confidence 34466677 99998888899999999986
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=216.51 Aligned_cols=284 Identities=19% Similarity=0.237 Sum_probs=237.9
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeE
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGII 907 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I 907 (1249)
+.+++|.+.|.+++|+.+|..+++|+.|+++++|++..... .....+.+|.+.|-.++|+| ....|++++.|.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh----hhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 46789999999999999999999999999999999988742 23457889998999999998 56799999999999
Q ss_pred EEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC
Q 000861 908 HMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
++||+. . ++ ++.......+.+. +. |+|+ |.++++++.|..|...|.|+.+.....+. .-
T Consensus 90 r~wd~r-~----~k--------~~~~i~~~~eni~-i~-wsp~---g~~~~~~~kdD~it~id~r~~~~~~~~~~---~~ 148 (313)
T KOG1407|consen 90 RIWDIR-S----GK--------CTARIETKGENIN-IT-WSPD---GEYIAVGNKDDRITFIDARTYKIVNEEQF---KF 148 (313)
T ss_pred EEEEec-c----Cc--------EEEEeeccCcceE-EE-EcCC---CCEEEEecCcccEEEEEecccceeehhcc---cc
Confidence 999998 2 22 2333333334443 44 8999 78999999999999999999887766554 55
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 988 YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 988 ~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
.+.-++|+-+++.++..+..|+|.|......+++.+++ .|.....++.| +|+|+ ++++|+.|..+.+||
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f-~p~Gr---------yfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEF-DPDGR---------YFATGSADALVSLWD 217 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEE-CCCCc---------eEeeccccceeeccC
Confidence 67888999888888888888999999999999999987 48888889999 99998 999999999999999
Q ss_pred CCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe
Q 000861 1068 AENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG 1146 (1249)
Q Consensus 1068 l~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs 1146 (1249)
++..-|.+.+..+.. +|+.+.|+.|| +|++|+
T Consensus 218 ~~ELiC~R~isRldw-----------------------------------------------pVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 218 VDELICERCISRLDW-----------------------------------------------PVRTLSFSHDGRMLASAS 250 (313)
T ss_pred hhHhhhheeeccccC-----------------------------------------------ceEEEEeccCcceeeccC
Confidence 999989888874332 89999999999 999999
Q ss_pred CCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEE
Q 000861 1147 TDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSL 1226 (1249)
Q Consensus 1147 ~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~l 1226 (1249)
+|..|-|=++++|..+..+. |.++-..+
T Consensus 251 EDh~IDIA~vetGd~~~eI~----------------------------------------------------~~~~t~tV 278 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP----------------------------------------------------CEGPTFTV 278 (313)
T ss_pred ccceEEeEecccCCeEEEee----------------------------------------------------ccCCceeE
Confidence 99999999999998876663 55667789
Q ss_pred EeeecCCCEEEEEeCC---------CeEEEc
Q 000861 1227 GSVKLNQRLLISSSRD---------GAIKVW 1248 (1249)
Q Consensus 1227 a~~s~dg~~LaSgs~D---------G~IkVW 1248 (1249)
+ |+|...+||-+..| |+||++
T Consensus 279 A-WHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 279 A-WHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred E-ecCCCceeeEEecCCCCccccccceeEEe
Confidence 9 99999999877654 577775
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=6.8e-25 Score=231.10 Aligned_cols=276 Identities=16% Similarity=0.217 Sum_probs=236.4
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEec--------cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQ--------EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEK 869 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~--------~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~ 869 (1249)
...|+|||+.+++++.|.-..+|+ .+|++-..|+ -|.++|.|+.|+.|...+|+|+.||.|+||.+.++..
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C 297 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC 297 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence 467999999999999888899999 7888765443 4788999999999999999999999999999999985
Q ss_pred ccccceeeEee-ccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEec
Q 000861 870 DISFRSRLTYH-LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYN 948 (1249)
Q Consensus 870 ~~~~~~~~t~~-~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs 948 (1249)
.. .|. .|...|+|+.|+.|+..+.+++.|.++++.-+. .|+ .++.+.+|...|+... |.
T Consensus 298 lR------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-----SGK--------~LKEfrGHsSyvn~a~-ft 357 (508)
T KOG0275|consen 298 LR------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-----SGK--------CLKEFRGHSSYVNEAT-FT 357 (508)
T ss_pred HH------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-----cch--------hHHHhcCccccccceE-Ec
Confidence 43 343 788899999999999999999999999999887 344 4778888999999998 99
Q ss_pred CCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccC
Q 000861 949 TDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYS 1027 (1249)
Q Consensus 949 ~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~ 1027 (1249)
++ |..+++++.||+|++|+..+.++..+++..+...+|.++..-|.+ ..++++...++|.+.++ .|+.++++..+
T Consensus 358 ~d---G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSG 433 (508)
T KOG0275|consen 358 DD---GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSG 433 (508)
T ss_pred CC---CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccC
Confidence 99 889999999999999999999999999887888899999988854 78888999999999998 68888887765
Q ss_pred C--CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCC
Q 000861 1028 Q--VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPK 1105 (1249)
Q Consensus 1028 ~--~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s 1105 (1249)
. .+..-+.+. +|.|. ++++.+.|+.++.|.+.+|....++..+..
T Consensus 434 kREgGdFi~~~l-SpkGe---------wiYcigED~vlYCF~~~sG~LE~tl~VhEk----------------------- 480 (508)
T KOG0275|consen 434 KREGGDFINAIL-SPKGE---------WIYCIGEDGVLYCFSVLSGKLERTLPVHEK----------------------- 480 (508)
T ss_pred CccCCceEEEEe-cCCCc---------EEEEEccCcEEEEEEeecCceeeeeecccc-----------------------
Confidence 3 334555566 89988 999999999999999999998777765432
Q ss_pred ccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1106 TDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1106 ~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
.+-.++.+|.. .+++-+.||.+++|.
T Consensus 481 ------------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 ------------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ------------------------cccccccCcccchhhhhcccchhhhcC
Confidence 44566667766 899999999999995
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-23 Score=241.02 Aligned_cols=274 Identities=17% Similarity=0.254 Sum_probs=223.6
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccccc
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISR 917 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~ 917 (1249)
.+=+.|+. .+.+|.|.. ..|.+|+..++.. ......+...|+++.|+++|.+|++|..+|.|.|||+. ..
T Consensus 180 ~nlldWss-~n~laValg-~~vylW~~~s~~v------~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~- 249 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVALG-QSVYLWSASSGSV------TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQ- 249 (484)
T ss_pred hhHhhccc-CCeEEEEec-ceEEEEecCCCce------EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hc-
Confidence 34466774 346666653 5899999998862 22333346789999999999999999999999999998 11
Q ss_pred CCCccccccCccceeeecC-CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcC
Q 000861 918 GLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGP 996 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~sp 996 (1249)
..++.+.+ |.+.|-+++ |... .+.+|+.++.|..+|+|..+.... ...+|...|..+.|++
T Consensus 250 -----------k~~~~~~~~h~~rvg~la-W~~~-----~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 250 -----------KKTRTLRGSHASRVGSLA-WNSS-----VLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSP 311 (484)
T ss_pred -----------cccccccCCcCceeEEEe-ccCc-----eEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECC
Confidence 23556666 889999998 8865 899999999999999999887655 3467999999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC--CCeEEEEECCCCcee
Q 000861 997 CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG--CNEVSLWNAENGSCH 1074 (1249)
Q Consensus 997 dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~--Dg~I~vWDl~tg~~~ 1074 (1249)
|+.++++|+.|+.+.|||.....++..+. .|.+.|..++| +|-.. .+|++|++ |+.|++||..+|.++
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~aw-cP~q~--------~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAW-CPWQS--------GLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeee-CCCcc--------CceEEcCCCcccEEEEEEcCCCcEe
Confidence 99999999999999999998888888765 59999999999 88765 47888876 889999999999876
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEE-EeCCCcE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLT-GGTDLKI 1151 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~t-gs~Dg~I 1151 (1249)
..+... ..|..+.|++.. .+.+ |-.++.|
T Consensus 382 ~~vdtg------------------------------------------------sQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 382 DSVDTG------------------------------------------------SQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred cccccC------------------------------------------------CceeeEEEcCCCCEEEEecCCCCCcE
Confidence 655421 178999999988 4433 3467899
Q ss_pred EEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeec
Q 000861 1152 RRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKL 1231 (1249)
Q Consensus 1152 riWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~ 1231 (1249)
.+|+..+.+....+ .+|...|..++ ++|
T Consensus 414 ~lw~~ps~~~~~~l---------------------------------------------------~gH~~RVl~la-~SP 441 (484)
T KOG0305|consen 414 TLWKYPSMKLVAEL---------------------------------------------------LGHTSRVLYLA-LSP 441 (484)
T ss_pred EEEeccccceeeee---------------------------------------------------cCCcceeEEEE-ECC
Confidence 99999886554333 37889999999 999
Q ss_pred CCCEEEEEeCCCeEEEcC
Q 000861 1232 NQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1232 dg~~LaSgs~DG~IkVWd 1249 (1249)
||..++||+.|.++++|+
T Consensus 442 dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCEEEEecccCcEEecc
Confidence 999999999999999996
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=250.71 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=236.6
Q ss_pred CCccCCCCcE-EEEecc-ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC
Q 000861 818 DSGWRPRGIL-VAHLQE-HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 818 ~~~W~~~G~l-v~~L~~-H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg 895 (1249)
...|++.... ...+.+ |...+++..|+ ..++++++.|+++++||..++.. ....+.+|.+.|++++|...+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-----i~~~l~GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 189 SKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-----ILTRLVGHFGGVWGLAFPSGG 261 (537)
T ss_pred cccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceE-----EEeeccCCCCCceeEEEecCC
Confidence 3456643322 234444 56789999998 45899999999999999998873 233389999999999999888
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS 975 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~ 975 (1249)
.++++|+.|.++++||.. +|. +.+.+.+|.+.+.++. ..+. .+++|+.|.+|++||+.++.
T Consensus 262 ~~lvsgS~D~t~rvWd~~-----sg~--------C~~~l~gh~stv~~~~-~~~~-----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCS-----TGE--------CTHSLQGHTSSVRCLT-IDPF-----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CEEEEEecCCcEEeEecC-----CCc--------EEEEecCCCceEEEEE-ccCc-----eEeeccCCceEEEEeccCcc
Confidence 999999999999999987 343 5788889999999987 5554 88889999999999999999
Q ss_pred cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 976 NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 976 ~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
.+..+.. |.++|.++.++ +..+++|+.||+|++||++++++++++. +|..+|.++.+ .+. . .++
T Consensus 323 ~l~l~~~--h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~-~~~-~---------~~~ 386 (537)
T KOG0274|consen 323 CLNLLRG--HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIV-DSE-N---------RLL 386 (537)
T ss_pred eEEEecc--ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEe-cCc-c---------eEE
Confidence 9988854 99999999998 7899999999999999999999999987 59999999988 443 4 799
Q ss_pred EEECCCeEEEEECCCC-ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEE
Q 000861 1056 VAAGCNEVSLWNAENG-SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSL 1134 (1249)
Q Consensus 1056 t~s~Dg~I~vWDl~tg-~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl 1134 (1249)
.|+.|+.|++||++++ +|..++..+.. -+..+
T Consensus 387 Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-----------------------------------------------~v~~l 419 (537)
T KOG0274|consen 387 SGSLDTTIKVWDLRTKRKCIHTLQGHTS-----------------------------------------------LVSSL 419 (537)
T ss_pred eeeeccceEeecCCchhhhhhhhcCCcc-----------------------------------------------ccccc
Confidence 9999999999999999 88888874332 22222
Q ss_pred eecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhccc
Q 000861 1135 LPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATD 1214 (1249)
Q Consensus 1135 ~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1214 (1249)
.+ .+..|++++.|++|++||..++++.+++.++
T Consensus 420 ~~-~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---------------------------------------------- 452 (537)
T KOG0274|consen 420 LL-RDNFLVSSSADGTIKLWDAEEGECLRTLEGR---------------------------------------------- 452 (537)
T ss_pred cc-ccceeEeccccccEEEeecccCceeeeeccC----------------------------------------------
Confidence 22 1238999999999999999999987777532
Q ss_pred ccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1215 SAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1215 ~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|...|+.++ +. ...+++++.||.+++||
T Consensus 453 ----~~~~v~~l~-~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 453 ----HVGGVSALA-LG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ----CcccEEEee-cC--cceEEEEecCCeeEEEe
Confidence 456787877 32 57899999999999996
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.6e-23 Score=250.90 Aligned_cols=268 Identities=21% Similarity=0.338 Sum_probs=227.8
Q ss_pred CccccccCCCCCccC-CCCcEEEE-eccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCc
Q 000861 808 PSFVRTSSIPDSGWR-PRGILVAH-LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSR 885 (1249)
Q Consensus 808 ~~~~~s~~~~~~~W~-~~G~lv~~-L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~ 885 (1249)
.+.+++.+.+..+|+ .+|..+.. +.||.+.|.++++...+.++++||.|.+++|||+.+++ +..++.+|.+.
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~------C~~~l~gh~st 293 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE------CTHSLQGHTSS 293 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc------EEEEecCCCce
Confidence 334455466778999 68988888 99999999999998877899999999999999999998 57789999999
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCe
Q 000861 886 ALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCG 965 (1249)
Q Consensus 886 V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~ 965 (1249)
|.++... ...+++|+.|.+|++|++. .+. .++.+.+|.++|.++. ++.+ ++++|+.||+
T Consensus 294 v~~~~~~--~~~~~sgs~D~tVkVW~v~-----n~~--------~l~l~~~h~~~V~~v~-~~~~-----~lvsgs~d~~ 352 (537)
T KOG0274|consen 294 VRCLTID--PFLLVSGSRDNTVKVWDVT-----NGA--------CLNLLRGHTGPVNCVQ-LDEP-----LLVSGSYDGT 352 (537)
T ss_pred EEEEEcc--CceEeeccCCceEEEEecc-----Ccc--------eEEEeccccccEEEEE-ecCC-----EEEEEecCce
Confidence 9888875 4578889999999999998 232 4777788999999998 6644 9999999999
Q ss_pred EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCC
Q 000861 966 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNA 1044 (1249)
Q Consensus 966 I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~ 1044 (1249)
|.+||+++++++.++. +|.+.|+++.+++. ..+++|+.|++|++||+++. +++.++. +|..-+..+.+ .++
T Consensus 353 v~VW~~~~~~cl~sl~--gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~---~~~- 424 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLS--GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL---RDN- 424 (537)
T ss_pred EEEEEhhhceeeeeec--CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc---ccc-
Confidence 9999999999999985 59999999998876 79999999999999999999 8999876 47777766665 444
Q ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCC
Q 000861 1045 AVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEP 1124 (1249)
Q Consensus 1045 ~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~ 1124 (1249)
++++++.|++|++||..+++|++++.+.
T Consensus 425 --------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------------------------------------------- 452 (537)
T KOG0274|consen 425 --------FLVSSSADGTIKLWDAEEGECLRTLEGR-------------------------------------------- 452 (537)
T ss_pred --------eeEeccccccEEEeecccCceeeeeccC--------------------------------------------
Confidence 7999999999999999999999998852
Q ss_pred CCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1125 PPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1125 ~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
+...|.++++. +..+++++.||.+++||+.+++....+
T Consensus 453 --~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 453 --HVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred --CcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 11166666665 347899999999999999999887755
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.1e-24 Score=250.85 Aligned_cols=258 Identities=14% Similarity=0.227 Sum_probs=206.0
Q ss_pred EEEEec-cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc----------------------------c--------
Q 000861 827 LVAHLQ-EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE----------------------------K-------- 869 (1249)
Q Consensus 827 lv~~L~-~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~----------------------------~-------- 869 (1249)
..+.+. +|.++|.++.||+||+||||||.||.|+||.+...+ .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 899999999999999999999999999999876500 0
Q ss_pred ---------c---------cccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccce
Q 000861 870 ---------D---------ISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDI 931 (1249)
Q Consensus 870 ---------~---------~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i 931 (1249)
. ..-++.+.|.||.+.|.++.|+.++ +|++++.|.+|++|++.. . .++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-----~--------~CL 403 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-----K--------ECL 403 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-----c--------cee
Confidence 0 0001456788999999999999875 899999999999999981 1 245
Q ss_pred eeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEE
Q 000861 932 KKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLT 1011 (1249)
Q Consensus 932 ~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~ 1011 (1249)
+.+. |.+.|+|++ |+|.. .+++++|+-||.|++|++...+...-... ...|+++||.|+|+..++|+.+|.++
T Consensus 404 ~~F~-HndfVTcVa-FnPvD--DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVA-FNPVD--DRYFISGSLDGKVRLWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEE-ecccC--CCcEeecccccceEEeecCcCeeEeehhh---hhhheeEEeccCCceEEEEEeccEEE
Confidence 5554 899999999 99974 67999999999999999988776544433 58999999999999999999999999
Q ss_pred EEeCCCCCcccccccC-------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCC
Q 000861 1012 LWDLRFLVPVNSWQYS-------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDG 1084 (1249)
Q Consensus 1012 lWDlr~~~~l~s~~~~-------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~ 1084 (1249)
+|+.+..+....+... ....|+.+.| .|... ..|++.+.|..|+|+|.++...+..|++.....
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~-~p~~~--------~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF-FPGDP--------DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEe-cCCCC--------CeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 9999876655544321 1227999999 76554 268999999999999998888888887543311
Q ss_pred CCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCC
Q 000861 1085 DTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1085 ~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~ 1159 (1249)
.-....|+.|| +|++|++|..|++|+....
T Consensus 548 ---------------------------------------------SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 548 ---------------------------------------------SQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---------------------------------------------cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22355677899 9999999999999998543
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.1e-23 Score=214.94 Aligned_cols=282 Identities=19% Similarity=0.258 Sum_probs=216.4
Q ss_pred eEEEEcC--CCCE-EEEE-----ECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC-CCEEEEEeCCCeEEE
Q 000861 839 NEIAISH--DHSF-FVSA-----SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH-SAQVVVGACDGIIHM 909 (1249)
Q Consensus 839 ~~la~sp--dg~~-laTg-----s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~I~v 909 (1249)
.++.||| ++++ +||+ ...|++.|-++....... ....|... ..+..++|+++ .+.+++++.||++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~---e~~s~d~~-D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ---ECQSYDTE-DGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE---EEEeeecc-cceeEeeecCCCcceEEEEecCceEEE
Confidence 4678888 3433 2332 246889999987544322 22344443 35999999995 468889999999999
Q ss_pred EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCce
Q 000861 910 FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYV 989 (1249)
Q Consensus 910 wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I 989 (1249)
||... ...+++.++.|..+|.++. |++.. +..+++++.||+|++||..-+..+.++ .+|...|
T Consensus 88 ~d~~~------------~s~Pi~~~kEH~~EV~Svd-wn~~~--r~~~ltsSWD~TiKLW~~~r~~Sv~Tf--~gh~~~I 150 (311)
T KOG0277|consen 88 FDLTM------------PSKPIHKFKEHKREVYSVD-WNTVR--RRIFLTSSWDGTIKLWDPNRPNSVQTF--NGHNSCI 150 (311)
T ss_pred eccCC------------CCcchhHHHhhhhheEEec-ccccc--ceeEEeeccCCceEeecCCCCcceEee--cCCccEE
Confidence 99661 1236888999999999999 88874 568888999999999999988888887 5699999
Q ss_pred EEEEEcC-CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 990 SSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 990 ~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
...+|+| .++.+++++.||++++||+|.......+. .|...|.++.| +... ...+++|+.|+.|+.||+
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw-~ky~--------~~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDW-SKYN--------HNVLATGGVDNLVRGWDI 220 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecc-cccC--------CcEEEecCCCceEEEEeh
Confidence 9999999 56899999999999999999754444444 47788999999 4433 258999999999999999
Q ss_pred CCCce-eEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEE
Q 000861 1069 ENGSC-HQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTG 1145 (1249)
Q Consensus 1069 ~tg~~-~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tg 1145 (1249)
++-+. +.++ .+|...|+.+.|||.. .|+++
T Consensus 221 r~~r~pl~eL-----------------------------------------------~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 221 RNLRTPLFEL-----------------------------------------------NGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred hhccccceee-----------------------------------------------cCCceEEEEEecCcchhhHhhhc
Confidence 86541 1111 2344489999999988 99999
Q ss_pred eCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeE
Q 000861 1146 GTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILS 1225 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~ 1225 (1249)
+.|.++||||...+... .++...|+.-|..
T Consensus 254 sYDmT~riw~~~~~ds~--------------------------------------------------~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 254 SYDMTVRIWDPERQDSA--------------------------------------------------IETVDHHTEFVCG 283 (311)
T ss_pred cccceEEecccccchhh--------------------------------------------------hhhhhccceEEec
Confidence 99999999998754331 1122358888988
Q ss_pred EEeeec-CCCEEEEEeCCCeEEEcC
Q 000861 1226 LGSVKL-NQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1226 la~~s~-dg~~LaSgs~DG~IkVWd 1249 (1249)
+. |++ ++.++|+++.|+.++||+
T Consensus 284 ~D-ws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 284 LD-WSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cc-cccccCceeeecccccceeeec
Confidence 98 665 588999999999999996
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.7e-23 Score=251.91 Aligned_cols=320 Identities=13% Similarity=0.181 Sum_probs=237.3
Q ss_pred ccc-CceeEEEEcCCCCEEEEEE--CCCcEEEEECCCCc-----ccc-ccceeeEeeccCCceEEEEEecCCCEEEEEeC
Q 000861 833 EHC-SAVNEIAISHDHSFFVSAS--DDSTVKVWDSRKLE-----KDI-SFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC 903 (1249)
Q Consensus 833 ~H~-~~V~~la~spdg~~laTgs--~DgtVkIWD~~~~~-----~~~-~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~ 903 (1249)
+|. ..|.+|..+|||..|+||+ .||.++||+...-- ... -.+...+...|.+.|.|+.|++||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 444 5799999999999999999 99999999876422 111 12345577789999999999999999999999
Q ss_pred CCeEEEEEccccc-----cCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccce
Q 000861 904 DGIIHMFSVDHIS-----RGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTW 978 (1249)
Q Consensus 904 Dg~I~vwdv~~~~-----~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~ 978 (1249)
|+.|.||.....+ ..+|........+.+..+.+|.+.|.+++ |+|+ +.++++++.|++|.+||.++.+.+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~-Wsp~---~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN-WSPD---DSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec-cCCC---ccEEEEecccceEEEEccccceeee
Confidence 9999999987200 00111122233346778889999999999 9998 7899999999999999999998888
Q ss_pred eeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC-----CCCCeeEEEEEcCCCCCcccCCCCCE
Q 000861 979 TLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS-----QVCPIEKMCLFVPPPNAAVSTTARPL 1053 (1249)
Q Consensus 979 ~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~-----~~~~I~~l~~~sp~g~~~~~~~~~~~ 1053 (1249)
++ .+|.+.|..+.|+|-|++|++-+.|++|++|+.......+.+..+ ...-+.++.| +|+|. +
T Consensus 166 vl--~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW-SPDG~---------~ 233 (942)
T KOG0973|consen 166 VL--RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW-SPDGH---------H 233 (942)
T ss_pred ee--ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc-CCCcC---------e
Confidence 77 569999999999999999999999999999997665554444322 3346889999 99998 7
Q ss_pred EEEEEC----CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCC
Q 000861 1054 IYVAAG----CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLL 1129 (1249)
Q Consensus 1054 l~t~s~----Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~ 1129 (1249)
|++... -.++.|.+-.+.++-..+.+|.+ .+..+.|+|. .... ... +|.. .
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~----p~evvrFnP~-lfe~-~~~-ng~~---------------~--- 288 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA----PVEVVRFNPK-LFER-NNK-NGTS---------------T--- 288 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCC----ceEEEEeChH-Hhcc-ccc-cCCc---------------c---
Confidence 777643 34688888877777777775443 4556666651 0000 000 0000 0
Q ss_pred CeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHh
Q 000861 1130 GIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLA 1209 (1249)
Q Consensus 1130 ~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~ 1209 (1249)
.-. . +-..+++||.|++|-+|....++...++..-
T Consensus 289 ~~~-~---~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----------------------------------------- 323 (942)
T KOG0973|consen 289 QPN-C---YYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----------------------------------------- 323 (942)
T ss_pred CCC-c---ceEEEEEecCCccEEEEecCCCCchhhhhhh-----------------------------------------
Confidence 000 0 0015789999999999999777665444211
Q ss_pred hhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1210 AAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1210 ~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
-...|.++. |+|||..|..+|.||+|.+.
T Consensus 324 ---------f~~SI~Dms-WspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 324 ---------FNKSIVDMS-WSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ---------hcCceeeee-EcCCCCeEEEEecCCeEEEE
Confidence 245799999 99999999999999999874
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-22 Score=212.56 Aligned_cols=261 Identities=18% Similarity=0.249 Sum_probs=215.1
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC--C
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC--D 904 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~--D 904 (1249)
+.+.|.+-.+.|+++.|+++|.++++++.|.+++|||..++.. ..++..+.-.+..++|....+.++.++. |
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~------~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ------VKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce------eeEeecccccccEEEEecCCceEEEccCCCC
Confidence 3455666778999999999999999999999999999999873 4566666667999999988888887777 8
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
.+|+..++. .. +.+|.+.+|...|..+. .+|- ++.+++++.|++|++||+|..++...+..
T Consensus 80 ~tIryLsl~-----dN--------kylRYF~GH~~~V~sL~-~sP~---~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-- 140 (311)
T KOG1446|consen 80 DTIRYLSLH-----DN--------KYLRYFPGHKKRVNSLS-VSPK---DDTFLSSSLDKTVRLWDLRVKKCQGLLNL-- 140 (311)
T ss_pred CceEEEEee-----cC--------ceEEEcCCCCceEEEEE-ecCC---CCeEEecccCCeEEeeEecCCCCceEEec--
Confidence 899999998 12 35899999999999999 9998 67999999999999999999888776643
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC--CCccccccc--CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC
Q 000861 985 EEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF--LVPVNSWQY--SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC 1060 (1249)
Q Consensus 985 h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~--~~~l~s~~~--~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D 1060 (1249)
..-...+|+|.|-.+|+|...+.|++||+|. ..+..++.. +.....+.|.| +|+|+ +++.++..
T Consensus 141 --~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F-S~dGK---------~iLlsT~~ 208 (311)
T KOG1446|consen 141 --SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF-SPDGK---------SILLSTNA 208 (311)
T ss_pred --CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEE-cCCCC---------EEEEEeCC
Confidence 2334569999999999999888999999995 345555443 34567899999 99999 99999999
Q ss_pred CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC
Q 000861 1061 NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG 1140 (1249)
Q Consensus 1061 g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg 1140 (1249)
+.+++.|.-+|.....+........ --...+|+||+
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~~--------------------------------------------~~~~a~ftPds 244 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAGN--------------------------------------------LPLSATFTPDS 244 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCCC--------------------------------------------cceeEEECCCC
Confidence 9999999999998888875432110 11467889999
Q ss_pred -eEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1141 -DLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1141 -~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
++++|+.||+|.+|+++++.....+.++
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 9999999999999999999887777654
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=221.28 Aligned_cols=305 Identities=14% Similarity=0.158 Sum_probs=240.2
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDG 905 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg 905 (1249)
+++..|.||++.|..++.......+.|+|.|.+.+||.++++. +..+|.+|.+.|.++.|++.+..+++++.|+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA------CLATYTGHTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc------ceeeecccccceeeEEeccccceEEEccCCc
Confidence 5778899999999999998888899999999999999999997 6789999999999999999999999999999
Q ss_pred eEEEEEccc------cccCC---C--cc------c-------ccc---CccceeeecCCCCcEEEEEEecCCCCCccEEE
Q 000861 906 IIHMFSVDH------ISRGL---G--NV------E-------KYS---GISDIKKKDTKEGAIVTLVNYNTDNCASHMFM 958 (1249)
Q Consensus 906 ~I~vwdv~~------~~~~~---g--~~------~-------~~~---~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~ 958 (1249)
+-+||.... ..... + +. . +.. -..++..+.+|.+.|.++. |-.. |+.++
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d-WL~g---g~Q~v 288 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD-WLAG---GQQMV 288 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh-hhcC---cceee
Confidence 999998321 00000 0 00 0 001 1124667888999999888 7777 77999
Q ss_pred EEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEE
Q 000861 959 YSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLF 1038 (1249)
Q Consensus 959 sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~ 1038 (1249)
+++.|.+-.+||+++++.+..+ .+|....+.++-+|..+++++.+.|.+.++||+|....--....+|...|++..|
T Consensus 289 TaSWDRTAnlwDVEtge~v~~L--tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF- 365 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNIL--TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF- 365 (481)
T ss_pred eeeccccceeeeeccCceeccc--cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE-
Confidence 9999999999999999999888 5699999999999999999999999999999998554433333479999999999
Q ss_pred cCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccc
Q 000861 1039 VPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR 1117 (1249)
Q Consensus 1039 sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~ 1117 (1249)
.-+.+ +++|+.|.+|++||+++.+ .+.+++..
T Consensus 366 ~~dd~----------vVSgSDDrTvKvWdLrNMRsplATIRtd------------------------------------- 398 (481)
T KOG0300|consen 366 NTDDR----------VVSGSDDRTVKVWDLRNMRSPLATIRTD------------------------------------- 398 (481)
T ss_pred ecCCc----------eeecCCCceEEEeeeccccCcceeeecC-------------------------------------
Confidence 76665 8999999999999998753 33344321
Q ss_pred ccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccC
Q 000861 1118 VDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQ 1196 (1249)
Q Consensus 1118 ~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~ 1196 (1249)
..++.++.+..+ .++.--+++.||+||++.... ..+.
T Consensus 399 -----------S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlP------------------------------ 436 (481)
T KOG0300|consen 399 -----------SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLP------------------------------ 436 (481)
T ss_pred -----------CccceeEeecCCceEEeccCCceEEEEecCCCcc-ccCC------------------------------
Confidence 156677777777 777777888999999964332 1111
Q ss_pred CccchhhHHHHHhhhcccccCCcccceeEEEeeecC--CCEEEEEeCCCeEEEcC
Q 000861 1197 PLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLN--QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~d--g~~LaSgs~DG~IkVWd 1249 (1249)
...-+||...|+|++ |..+ -.-|+|+|-|..+.=|+
T Consensus 437 ----------------rtsRqgHrRMV~c~A-W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 437 ----------------RTSRQGHRRMVTCCA-WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ----------------cccccccceeeeeee-ccccCcccccccccccceeeeeE
Confidence 012348999999999 7543 45589999999998885
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.8e-23 Score=229.97 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=220.5
Q ss_pred cCceeEEEEcCCCC--EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEc
Q 000861 835 CSAVNEIAISHDHS--FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 835 ~~~V~~la~spdg~--~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv 912 (1249)
.++|.+++|+|... +.+|+| -.|.||+..+... ..++......|.+++|..||+.+++|...|.|++||.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSV------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhh------hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 46799999999664 444444 4799999988763 3345555667999999999999999999999999996
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
. . ...++.+..|+.++.... |+|.. +..+++|+.|+.+++||+.+... .....+|.+.|+|.
T Consensus 98 k------~-------r~iLR~~~ah~apv~~~~-f~~~d--~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 98 K------S-------RVILRQLYAHQAPVHVTK-FSPQD--NTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCG 159 (487)
T ss_pred c------c-------HHHHHHHhhccCceeEEE-ecccC--CeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEee
Confidence 5 1 124788889999999998 99985 66899999999999999998885 44557899999999
Q ss_pred EEcCC-CCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCC
Q 000861 993 VTGPC-GNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070 (1249)
Q Consensus 993 ~~spd-g~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t 1070 (1249)
+|+|. +..+++|+.||.|++||.|.. ..+.++ .|+.+|.++.+ .|.|. .+++| +.+.|+|||+.+
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~-lpsgs---------~iasA-gGn~vkVWDl~~ 226 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLA-LPSGS---------LIASA-GGNSVKVWDLTT 226 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEE-cCCCC---------EEEEc-CCCeEEEEEecC
Confidence 99995 568999999999999999987 555555 47889999999 99987 45544 566899999987
Q ss_pred CceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCC
Q 000861 1071 GSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDL 1149 (1249)
Q Consensus 1071 g~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg 1149 (1249)
|...-... ..|...|+|+.+..++ .|++||-|+
T Consensus 227 G~qll~~~----------------------------------------------~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 227 GGQLLTSM----------------------------------------------FNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred Cceehhhh----------------------------------------------hcccceEEEEEeecCCceEeeccccc
Confidence 64322211 1244589999999999 999999999
Q ss_pred cEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEee
Q 000861 1150 KIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSV 1229 (1249)
Q Consensus 1150 ~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~ 1229 (1249)
.|++||+.+.+..+.+. -.++|.+++ .
T Consensus 261 ~VKVfd~t~~Kvv~s~~----------------------------------------------------~~~pvLsia-v 287 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWK----------------------------------------------------YPGPVLSIA-V 287 (487)
T ss_pred ceEEEEccceEEEEeee----------------------------------------------------cccceeeEE-e
Confidence 99999987655544332 346799999 8
Q ss_pred ecCCCEEEEEeCCCeEEE
Q 000861 1230 KLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1230 s~dg~~LaSgs~DG~IkV 1247 (1249)
+|+++.++.|-.||.+-+
T Consensus 288 s~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cCCCceEEEecccceeee
Confidence 999999999999998754
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=219.10 Aligned_cols=285 Identities=16% Similarity=0.275 Sum_probs=221.3
Q ss_pred CCCCCCCCCCccccccCCCCCccC-C------------------CCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcE
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-P------------------RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTV 859 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~------------------~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtV 859 (1249)
...|++||...+.++.|.++++.+ + ..-+|++|-.|.+.|+++.|+|....|++|+.|++|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 457899999988888776666554 2 124789999999999999999999999999999999
Q ss_pred EEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCC
Q 000861 860 KVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEG 939 (1249)
Q Consensus 860 kIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~ 939 (1249)
|++|+.+......++ +.....+|.++.|+|.|.+|++|....++++||+++ . ++ |-. ...-+.|.+
T Consensus 197 KlFDfsK~saKrA~K----~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~----Qc--fvs---anPd~qht~ 262 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFK----VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-Y----QC--FVS---ANPDDQHTG 262 (430)
T ss_pred EEEecccHHHHHHHH----HhhccceeeeEeecCCCceEEEecCCCceeEEeccc-e----eE--eee---cCccccccc
Confidence 999998765333222 222345799999999999999999999999999982 1 11 000 112245889
Q ss_pred cEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC
Q 000861 940 AIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV 1019 (1249)
Q Consensus 940 ~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~ 1019 (1249)
.|+++. |++. +++.++++.||.|++||--+++++.++........|++..|..+|+++++.+.|..+++|.+.+++
T Consensus 263 ai~~V~-Ys~t---~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVR-YSST---GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEE-ecCC---ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999998 9998 789999999999999999999999998754345679999999999999999999999999999999
Q ss_pred cccccccCCC-CC---eeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCCceeEEEecccCCCCCCccccccc
Q 000861 1020 PVNSWQYSQV-CP---IEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWA 1094 (1249)
Q Consensus 1020 ~l~s~~~~~~-~~---I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~s 1094 (1249)
++..+..... +. -+...| +.... +++.-.+ .+.+.-||.+++..+..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvF-NhtEd---------yVl~pDEas~slcsWdaRtadr~~l~s---------------- 392 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVF-NHTED---------YVLFPDEASNSLCSWDARTADRVALLS---------------- 392 (430)
T ss_pred eEEEEecCCcccchhhhhhhhh-cCccc---------eEEccccccCceeeccccchhhhhhcc----------------
Confidence 9998764311 11 112233 33332 5555443 5789999999876544333
Q ss_pred ccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1095 FARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1095 p~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
.+|.+.++.+.-+|.+ .++|||.|.++|+|--.
T Consensus 393 ------------------------------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 393 ------------------------------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ------------------------------cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2455588999999999 99999999999999643
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.2e-22 Score=222.95 Aligned_cols=267 Identities=18% Similarity=0.192 Sum_probs=213.8
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc-----------eeeEe-eccCCceEEEEEecCC
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR-----------SRLTY-HLEGSRALCTMMLRHS 895 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~-----------~~~t~-~~h~~~V~sl~fspdg 895 (1249)
...+..|.-+|+|++++||+++.++++.||+|.=|++.++.....+. +...- ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56778899999999999999999999999999999998887431111 11111 3788899999999999
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS 975 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~ 975 (1249)
++|++|+.|..|.||+.+ + . +.++.+.+|.+.|.+++ |-.. ...+++++.|+.|++|++....
T Consensus 215 kylatgg~d~~v~Iw~~~-t----~--------ehv~~~~ghr~~V~~L~-fr~g---t~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCD-T----L--------EHVKVFKGHRGAVSSLA-FRKG---TSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cEEEecCCCceEEEecCc-c----c--------chhhcccccccceeeee-eecC---ccceeeeecCCceEEEehhHhH
Confidence 999999999999999998 1 2 24667889999999999 8766 4589999999999999999888
Q ss_pred cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 976 NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 976 ~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
.+.++ .+|++.|.++.....++.+.+|+.|+++++|++.... +.+..++.+.+.+++| -.+. .++
T Consensus 278 ~vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~-In~~----------Hfv 342 (479)
T KOG0299|consen 278 YVETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAF-INDE----------HFV 342 (479)
T ss_pred HHHHH--hCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEE-eccc----------cee
Confidence 87777 6799999999998888899999999999999994322 2233467889999999 5444 589
Q ss_pred EEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEe
Q 000861 1056 VAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLL 1135 (1249)
Q Consensus 1056 t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~ 1135 (1249)
+|+.+|.|.+|++.+.+.+.+.+...+-.. .. .+-.+..+|++++
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~----~~-------------------------------~~~~~~~Witsla 387 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIP----EL-------------------------------DPVNGNFWITSLA 387 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccC----Cc-------------------------------cccccccceeeeE
Confidence 999999999999998887776663222100 00 0011123899999
Q ss_pred ecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1136 PLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1136 ~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
..|.. .+++|+.+|.||+|.+..+-.
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCcc
Confidence 99988 999999999999999987743
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=216.32 Aligned_cols=298 Identities=17% Similarity=0.260 Sum_probs=230.2
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCcc-ccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECC
Q 000861 779 FPEMGTSGTAKGSSINVEDASSPADLTGLPSF-VRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD 856 (1249)
Q Consensus 779 ~~~~g~~~~i~~~~~~~~~~~~~~s~~G~~~~-~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D 856 (1249)
-.++||.+++...... .++|+. +.+.|.+..+|. ..|.|+.++.||.+.|++|.|++.+.+++|||.|
T Consensus 142 re~~GHkDGiW~Vaa~----------~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAAD----------STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred hhhcccccceeeehhh----------cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 3467887777644321 234443 345588899999 8999999999999999999999999999999999
Q ss_pred CcEEEEEC------CC--------Cccc-------------------cccc-eeeEeeccCCceEEEEEecCCCEEEEEe
Q 000861 857 STVKVWDS------RK--------LEKD-------------------ISFR-SRLTYHLEGSRALCTMMLRHSAQVVVGA 902 (1249)
Q Consensus 857 gtVkIWD~------~~--------~~~~-------------------~~~~-~~~t~~~h~~~V~sl~fspdg~~Lasgs 902 (1249)
++-.||.. .. .+.. .+++ +...+.+|.+.|.+..|...|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999972 11 0000 0111 4456788999999999999999999999
Q ss_pred CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec
Q 000861 903 CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 903 ~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~ 982 (1249)
.|.+..+||++ +|. .+..+.+|+...+.++ -+|. .+++++++.|.+.++||.|.. ....--+
T Consensus 292 WDRTAnlwDVE-----tge--------~v~~LtGHd~ELtHcs-tHpt---QrLVvTsSrDtTFRLWDFRea-I~sV~VF 353 (481)
T KOG0300|consen 292 WDRTANLWDVE-----TGE--------VVNILTGHDSELTHCS-THPT---QRLVVTSSRDTTFRLWDFREA-IQSVAVF 353 (481)
T ss_pred ccccceeeeec-----cCc--------eeccccCcchhccccc-cCCc---ceEEEEeccCceeEeccchhh-cceeeee
Confidence 99999999999 344 4777888999999887 7887 779999999999999999943 2222234
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC
Q 000861 983 IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN 1061 (1249)
Q Consensus 983 ~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg 1061 (1249)
.+|...|++..|..+. .+++|+.|.+|++||+++. .++.++. ...++++++. +..+. .|+.-..+.
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvav-s~g~~---------iIAiPhDNR 420 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAV-SKGHP---------IIAIPHDNR 420 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEe-ecCCc---------eEEeccCCc
Confidence 6799999999998765 6889999999999999864 4666665 4668999998 66554 666666777
Q ss_pred eEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-
Q 000861 1062 EVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG- 1140 (1249)
Q Consensus 1062 ~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg- 1140 (1249)
.|++||+. |..+..+... ...+|..-|.|++|..+.
T Consensus 421 qvRlfDln-G~RlaRlPrt------------------------------------------sRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 421 QVRLFDLN-GNRLARLPRT------------------------------------------SRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eEEEEecC-CCccccCCcc------------------------------------------cccccceeeeeeeccccCc
Confidence 89999997 4433333210 113555579999998766
Q ss_pred --eEEEEeCCCcEEEEeCCCCC
Q 000861 1141 --DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1141 --~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
-|+++|.|+.+.=|++..+.
T Consensus 458 ~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccccccccccceeeeeEecccC
Confidence 79999999999999998664
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-21 Score=195.15 Aligned_cols=306 Identities=19% Similarity=0.260 Sum_probs=231.2
Q ss_pred CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc------cccccceee---EeeccCCceEEEEEecCC
Q 000861 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE------KDISFRSRL---TYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~------~~~~~~~~~---t~~~h~~~V~sl~fspdg 895 (1249)
-..+..|. .+.+|.+++|+|.|.+.+.||+..+.+|--..... ......+.. .-+.|.+.|.|.+|+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34455554 67789999999999999999999999987543221 111111111 234588899999999999
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCC-ccEEEEEE-CCCeEEEEEcCC
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCA-SHMFMYST-QNCGIHLWDTRS 973 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~-g~~L~sgs-~dg~I~iwDlrt 973 (1249)
..+++|+.|.+|++...+. . .....| .-..+..|.+.|..++ |-.+..+ +.++++++ .|+.|++-|..+
T Consensus 102 eliatgsndk~ik~l~fn~-d-----t~~~~g--~dle~nmhdgtirdl~-fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNA-D-----TCNATG--HDLEFNMHDGTIRDLA-FLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred CeEEecCCCceEEEEeccc-c-----cccccC--cceeeeecCCceeeeE-EecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999988761 1 111122 1234666999999999 7554322 34555544 478899999999
Q ss_pred CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC------CCCCeeEEEEEcCCCCCccc
Q 000861 974 NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS------QVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 974 ~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~------~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
|+....+ .+|.+-|.++. +-++-.+++|+.|.+|++||+|-..++..+... ....|.+++. .|.|+
T Consensus 173 g~~~~a~--sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v-dpsgr---- 244 (350)
T KOG0641|consen 173 GQGFHAL--SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV-DPSGR---- 244 (350)
T ss_pred CCcceee--cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE-CCCcc----
Confidence 9988877 56899888753 446778999999999999999998888775431 1257899999 99998
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCC
Q 000861 1048 TTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPR 1127 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~ 1127 (1249)
++++|..|....+||++.++.++.+..+
T Consensus 245 -----ll~sg~~dssc~lydirg~r~iq~f~ph----------------------------------------------- 272 (350)
T KOG0641|consen 245 -----LLASGHADSSCMLYDIRGGRMIQRFHPH----------------------------------------------- 272 (350)
T ss_pred -----eeeeccCCCceEEEEeeCCceeeeeCCC-----------------------------------------------
Confidence 8999999999999999999888877633
Q ss_pred CCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHH
Q 000861 1128 LLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKA 1206 (1249)
Q Consensus 1128 ~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~ 1206 (1249)
...|+|+.|+|.. +++|++.|..|++-|+... ....+ .+.++.
T Consensus 273 sadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el--------------------~~~vv~--------------- 316 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHEL--------------------PIMVVA--------------- 316 (350)
T ss_pred ccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcC--------------------ceEEEE---------------
Confidence 2389999999998 9999999999999998632 11111 112222
Q ss_pred HHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1207 VLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1207 ~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
.|.+.+..+. |+|..--++|.|.|.++.+|
T Consensus 317 -----------ehkdk~i~~r-wh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 317 -----------EHKDKAIQCR-WHPQDFSFISSSADKTATLW 346 (350)
T ss_pred -----------eccCceEEEE-ecCccceeeeccCcceEEEe
Confidence 4888888888 99988889999999999999
No 81
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=5.5e-22 Score=239.27 Aligned_cols=265 Identities=11% Similarity=0.113 Sum_probs=195.3
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc-------ceeeEeeccCCceEEEEEec-CCCEEEEEeCCC
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISF-------RSRLTYHLEGSRALCTMMLR-HSAQVVVGACDG 905 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~-------~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg 905 (1249)
|...|+....++|+..+++++.+.....|+...+...... .....+.+|.+.|.+++|+| ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666667777667777777777777876543211100 11224778999999999999 889999999999
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
+|++||+.. . ... ......+..+.+|...|.++. |+|++ +.+|++++.|+.|++||+++++....+ ..|
T Consensus 99 tIkIWdi~~-~----~~~-~~~~~~l~~L~gH~~~V~~l~-f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l--~~h 167 (493)
T PTZ00421 99 TIMGWGIPE-E----GLT-QNISDPIVHLQGHTKKVGIVS-FHPSA--MNVLASAGADMVVNVWDVERGKAVEVI--KCH 167 (493)
T ss_pred EEEEEecCC-C----ccc-cccCcceEEecCCCCcEEEEE-eCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEE--cCC
Confidence 999999972 1 110 001124667888999999999 99984 359999999999999999999877666 458
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCC-eeEEEEEcCCCCCcccCCCCCEEEEEE----CC
Q 000861 986 EGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCP-IEKMCLFVPPPNAAVSTTARPLIYVAA----GC 1060 (1249)
Q Consensus 986 ~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~-I~~l~~~sp~g~~~~~~~~~~~l~t~s----~D 1060 (1249)
.+.|.+++|+|+|.+|++|+.||.|++||++++..+..+. +|.+. +..+.| .+++. .+++++ .|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w-~~~~~---------~ivt~G~s~s~D 236 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLW-AKRKD---------LIITLGCSKSQQ 236 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEE-cCCCC---------eEEEEecCCCCC
Confidence 8899999999999999999999999999999999887765 35443 456777 77765 566654 37
Q ss_pred CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC
Q 000861 1061 NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG 1140 (1249)
Q Consensus 1061 g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg 1140 (1249)
+.|++||+++......... . .....+....|++++
T Consensus 237 r~VklWDlr~~~~p~~~~~--~-------------------------------------------d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVD--L-------------------------------------------DQSSALFIPFFDEDT 271 (493)
T ss_pred CeEEEEeCCCCCCceeEec--c-------------------------------------------CCCCceEEEEEcCCC
Confidence 8999999986542211110 0 001145566788998
Q ss_pred -eEEEEe-CCCcEEEEeCCCCCccEEE
Q 000861 1141 -DLLTGG-TDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1141 -~L~tgs-~Dg~IriWDl~~~~~~~~l 1165 (1249)
.+++|| .|+.|++||+.+++.....
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 777776 5999999999988766554
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-22 Score=234.33 Aligned_cols=261 Identities=19% Similarity=0.265 Sum_probs=216.9
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeec-cCCceEEEEEec
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL-EGSRALCTMMLR 893 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~-h~~~V~sl~fsp 893 (1249)
....+|+ .+|....-..-+...|+++.|+++|.+|+.|..+|.|.|||...... ..++.+ |...|-+++|.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~------~~~~~~~h~~rvg~laW~- 269 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK------TRTLRGSHASRVGSLAWN- 269 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc------cccccCCcCceeEEEecc-
Confidence 4577999 57775554555589999999999999999999999999999988764 345566 89999999997
Q ss_pred CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 894 HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 894 dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
+..+.+|+.||.|..+|+. .. + ..+..+.+|...|..+. |+++ +.++++|+.|+.+.|||...
T Consensus 270 -~~~lssGsr~~~I~~~dvR-~~----~-------~~~~~~~~H~qeVCgLk-ws~d---~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 270 -SSVLSSGSRDGKILNHDVR-IS----Q-------HVVSTLQGHRQEVCGLK-WSPD---GNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred -CceEEEecCCCcEEEEEEe-cc----h-------hhhhhhhcccceeeeeE-ECCC---CCeeccCCCccceEeccCCC
Confidence 6789999999999999998 21 1 12234778999999999 9999 88999999999999999987
Q ss_pred CccceeeecCCCCCceEEEEEcCC-CCEEEEE--ecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCC
Q 000861 974 NSNTWTLKAIPEEGYVSSLVTGPC-GNWFVSG--SSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTA 1050 (1249)
Q Consensus 974 ~~~~~~l~~~~h~~~I~sl~~spd-g~~L~sg--s~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~ 1050 (1249)
.+....+ ..|.+.|..++|+|- ...||+| +.|++|++||..++..+.... ....|..|.| ++..+
T Consensus 333 ~~p~~~~--~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~W-sk~~k------- 400 (484)
T KOG0305|consen 333 PEPKFTF--TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIW-SKKYK------- 400 (484)
T ss_pred ccccEEE--eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEE-cCCCC-------
Confidence 7777666 459999999999994 5788885 469999999999999999865 5678999999 88876
Q ss_pred CCEEEEEEC--CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCC
Q 000861 1051 RPLIYVAAG--CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRL 1128 (1249)
Q Consensus 1051 ~~~l~t~s~--Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~ 1128 (1249)
.++++.+ ++.|.||++.+.+.+..+.+ |.
T Consensus 401 --Ei~sthG~s~n~i~lw~~ps~~~~~~l~g-----------------------------------------------H~ 431 (484)
T KOG0305|consen 401 --ELLSTHGYSENQITLWKYPSMKLVAELLG-----------------------------------------------HT 431 (484)
T ss_pred --EEEEecCCCCCcEEEEeccccceeeeecC-----------------------------------------------Cc
Confidence 5666654 57899999998766655553 33
Q ss_pred CCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1129 LGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1129 ~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
..|..++++||| .+++|+.|.++++|++-....
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence 489999999999 999999999999999987543
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=227.50 Aligned_cols=272 Identities=18% Similarity=0.238 Sum_probs=222.2
Q ss_pred CCCCCCCCCccccccCCCCCccCCC-C--cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWRPR-G--ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~~~-G--~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
++|-++...++.++.+.-+.+|+.. + .++.+|.|-.++|+++.|.++++.+++++.|+.+++|++.... ..
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r------~~ 254 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR------LR 254 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh------hh
Confidence 4444443445555556778999943 3 3788999999999999999999999999999999999999876 46
Q ss_pred eEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 877 LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.++.+|.+.|+++.|......+++|+.|.+|+.||+. ... +.+++- ....+.+++ ..+. .
T Consensus 255 ~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~------------C~kt~l-~~S~cnDI~-~~~~-----~ 314 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAY------------CSKTVL-PGSQCNDIV-CSIS-----D 314 (459)
T ss_pred hhhcccccceeeehhhccccceeeccccchhhhhhhh-hhh------------eecccc-ccccccceE-ecce-----e
Confidence 7899999999999999887779999999999999998 221 122211 233455555 3333 7
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC---CCCCee
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS---QVCPIE 1033 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~---~~~~I~ 1033 (1249)
+++|-.|++|++||.|+..+...... .|.|+++..+++|..+.+++.|.++.+.|+|+......+... ..+..+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eeecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 88999999999999999999887754 569999999999999999999999999999998877665431 223578
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~ 1113 (1249)
+++| +|++. |+++|+.||.|+||++.++++...+.....+
T Consensus 392 rvvf-Spd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------------------------------ 431 (459)
T KOG0288|consen 392 RVVF-SPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------------------------------ 431 (459)
T ss_pred eeEE-CCCCc---------eeeeccCCCcEEEEEccCceEEEEeccCCCC------------------------------
Confidence 8999 99998 9999999999999999999998888743221
Q ss_pred ccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
..|+++.|+|.| .+++++.++.+++|.
T Consensus 432 ---------------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 ---------------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---------------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 179999999999 999999999999993
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=218.50 Aligned_cols=283 Identities=17% Similarity=0.222 Sum_probs=233.3
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
..|+++...|....+.||+.|.++.++|....+ ...++.||...|+.+.|+++...+++++.|..|+||.+...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 468888888887899999999999999998876 46689999999999999999999999999999999999822
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
+ .......|+++|+.+. .+|. |.++++++.||...+.|++++..+.........-.+++.+|+
T Consensus 294 s-------------~~~~~~~h~~~V~~ls-~h~t---geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH 356 (506)
T KOG0289|consen 294 S-------------EPTSSRPHEEPVTGLS-LHPT---GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH 356 (506)
T ss_pred c-------------Cccccccccccceeee-eccC---CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc
Confidence 1 2334566999999998 8998 789999999999999999999987666433334569999999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
|||..|.+|+.||.|++||+..+..+..|. +|.++|..+.| +-+|- |+++++.|+.|++||++..+..+
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~F-sENGY---------~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISF-SENGY---------WLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEe-ccCce---------EEEEEecCCeEEEEEehhhcccc
Confidence 999999999999999999999999888887 59999999999 77765 99999999999999999877655
Q ss_pred EEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEE
Q 000861 1076 VLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRW 1154 (1249)
Q Consensus 1076 ~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriW 1154 (1249)
++.... ..++.++.|.+.| +|+.+|.|=+|+++
T Consensus 426 t~~l~~----------------------------------------------~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 426 TIQLDE----------------------------------------------KKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred eeeccc----------------------------------------------cccceeEEEcCCCCeEEeecceeEEEEE
Confidence 554211 1168899999999 99999888777777
Q ss_pred eCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCC
Q 000861 1155 DHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQR 1234 (1249)
Q Consensus 1155 Dl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~ 1234 (1249)
+-.+..= ..+. .+.-|.+..+++. |....+
T Consensus 460 ~k~~k~W-~~~~------------------------------------------------~~~~~sg~st~v~-Fg~~aq 489 (506)
T KOG0289|consen 460 KKKTKSW-TEIK------------------------------------------------ELADHSGLSTGVR-FGEHAQ 489 (506)
T ss_pred ecccccc-eeee------------------------------------------------hhhhcccccceee-ecccce
Confidence 6433211 1111 1224677778888 888899
Q ss_pred EEEEEeCCCeEEEc
Q 000861 1235 LLISSSRDGAIKVW 1248 (1249)
Q Consensus 1235 ~LaSgs~DG~IkVW 1248 (1249)
+++++|.|..++++
T Consensus 490 ~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 490 YLASTSMDAILRLY 503 (506)
T ss_pred EEeeccchhheEEe
Confidence 99999999998886
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.7e-22 Score=198.43 Aligned_cols=286 Identities=18% Similarity=0.203 Sum_probs=215.7
Q ss_pred CCCCCCCCCCccccccCCCCC------ccC----------CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEE
Q 000861 799 SSPADLTGLPSFVRTSSIPDS------GWR----------PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVW 862 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~------~W~----------~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIW 862 (1249)
++.|.|.|...+.++.+.+.+ +-+ |...+-..-+.|++.|.|.+|+|+|++++|||+|.+|++.
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 566777777666555322211 111 1223445556799999999999999999999999999998
Q ss_pred ECCCCccccccceeeEeeccCCceEEEEEecC----CCEEEEEeC-CCeEEEEEccccccCCCccccccCccceeeecCC
Q 000861 863 DSRKLEKDISFRSRLTYHLEGSRALCTMMLRH----SAQVVVGAC-DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK 937 (1249)
Q Consensus 863 D~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd----g~~Lasgs~-Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h 937 (1249)
..+......+ .....+..|.+.|..++|..+ +..|++++. |..|++-|.. + |. .+..+.+|
T Consensus 117 ~fn~dt~~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~---~--g~--------~~~a~sgh 182 (350)
T KOG0641|consen 117 PFNADTCNAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG---R--GQ--------GFHALSGH 182 (350)
T ss_pred eccccccccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC---C--CC--------cceeecCC
Confidence 7765432221 134578889999999999864 456666543 4444444443 1 22 36678889
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC-----CceEEEEEcCCCCEEEEEecCCcEEE
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE-----GYVSSLVTGPCGNWFVSGSSRGVLTL 1012 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~-----~~I~sl~~spdg~~L~sgs~dG~I~l 1012 (1249)
.+.|.++-.|+.- ++++|+.|.+|++||+|-..++.++...-|. +.|.+++++|.|++|++|..|....+
T Consensus 183 tghilalyswn~~-----m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 183 TGHILALYSWNGA-----MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cccEEEEEEecCc-----EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 9999999777655 9999999999999999999988888654443 56999999999999999999999999
Q ss_pred EeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCccccc
Q 000861 1013 WDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLP 1092 (1249)
Q Consensus 1013 WDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~ 1092 (1249)
||+|-+++++.+. +|...|+++.| +|... ++++++.|..|++-|+. |.....+...
T Consensus 258 ydirg~r~iq~f~-phsadir~vrf-sp~a~---------yllt~syd~~ikltdlq-gdla~el~~~------------ 313 (350)
T KOG0641|consen 258 YDIRGGRMIQRFH-PHSADIRCVRF-SPGAH---------YLLTCSYDMKIKLTDLQ-GDLAHELPIM------------ 313 (350)
T ss_pred EEeeCCceeeeeC-CCccceeEEEe-CCCce---------EEEEecccceEEEeecc-cchhhcCceE------------
Confidence 9999999999975 79999999999 99877 99999999999999986 3322221100
Q ss_pred ccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1093 WAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1093 ~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
....|...+-.+.|+|.. .+++.+.|.++.+|-+.
T Consensus 314 ------------------------------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 ------------------------------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ------------------------------EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 001233467788999998 88999999999999764
No 86
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=1.2e-21 Score=236.47 Aligned_cols=220 Identities=13% Similarity=0.202 Sum_probs=173.7
Q ss_pred EeccccCceeEEEEcC-CCCEEEEEECCCcEEEEECCCCccc-cccceeeEeeccCCceEEEEEecCC-CEEEEEeCCCe
Q 000861 830 HLQEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKD-ISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDGI 906 (1249)
Q Consensus 830 ~L~~H~~~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~-~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~ 906 (1249)
.+.||.+.|++++|+| ++++|+|||.||+|++||+.+.... ....+...+.+|...|.+++|+|++ +.|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765311 1112456788999999999999975 69999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
|++||+. .+. .+..+..|.+.|.++. |+|+ +.++++++.|+.|++||+++++.+..+. +|.
T Consensus 150 VrIWDl~-----tg~--------~~~~l~~h~~~V~sla-~spd---G~lLatgs~Dg~IrIwD~rsg~~v~tl~--~H~ 210 (493)
T PTZ00421 150 VNVWDVE-----RGK--------AVEVIKCHSDQITSLE-WNLD---GSLLCTTSKDKKLNIIDPRDGTIVSSVE--AHA 210 (493)
T ss_pred EEEEECC-----CCe--------EEEEEcCCCCceEEEE-EECC---CCEEEEecCCCEEEEEECCCCcEEEEEe--cCC
Confidence 9999998 122 3566778899999999 9999 7899999999999999999998877764 455
Q ss_pred Cc-eEEEEEcCCCCEEEEEe----cCCcEEEEeCCCCC-cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-C
Q 000861 987 GY-VSSLVTGPCGNWFVSGS----SRGVLTLWDLRFLV-PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-G 1059 (1249)
Q Consensus 987 ~~-I~sl~~spdg~~L~sgs----~dG~I~lWDlr~~~-~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~ 1059 (1249)
+. +..+.|.+++..+++++ .||.|++||++... ++..........+....| ++++. ++++++ +
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d~~---------~L~lggkg 280 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DEDTN---------LLYIGSKG 280 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCCCC---------EEEEEEeC
Confidence 44 45678888877777654 47899999998654 443333223334555556 88887 788777 6
Q ss_pred CCeEEEEECCCCceeEEEe
Q 000861 1060 CNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1060 Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
|+.|++||+.+++......
T Consensus 281 Dg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 281 EGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCeEEEEEeeCCceEEEee
Confidence 9999999999988766544
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1e-22 Score=209.82 Aligned_cols=243 Identities=15% Similarity=0.225 Sum_probs=197.6
Q ss_pred ccCceeEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEE
Q 000861 834 HCSAVNEIAISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 834 H~~~V~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwd 911 (1249)
-.+.+..++|+++. ..+++++.||++++||...... +...++.|...|.++.|.+ +++.++++|.||+|++|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-----chhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 45789999999875 5888999999999999655443 5678889999999999998 566788889999999999
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEE
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSS 991 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~s 991 (1249)
... ...++++.+|...|.... |+|..+ +.+++++.||.+++||+|.......+ +.|...|.|
T Consensus 134 ~~r-------------~~Sv~Tf~gh~~~Iy~a~-~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~~i--~ah~~Eil~ 195 (311)
T KOG0277|consen 134 PNR-------------PNSVQTFNGHNSCIYQAA-FSPHIP--NLFASASGDGTLRLWDVRSPGKFMSI--EAHNSEILC 195 (311)
T ss_pred CCC-------------CcceEeecCCccEEEEEe-cCCCCC--CeEEEccCCceEEEEEecCCCceeEE--EeccceeEe
Confidence 881 124778899999999998 999874 49999999999999999976554445 458889999
Q ss_pred EEEcC-CCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 992 LVTGP-CGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 992 l~~sp-dg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+.|+. +.+.++||+.|+.|++||+|.- .++..+ .+|+-.|+++.| +|... ..|++++.|=++++||.+
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~-Sph~~--------~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKF-SPHHA--------SLLASASYDMTVRIWDPE 265 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceee-cCCceEEEEEec-Ccchh--------hHhhhccccceEEecccc
Confidence 99998 5689999999999999999864 566665 579999999999 88765 578999999999999998
Q ss_pred CCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEe
Q 000861 1070 NGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGG 1146 (1249)
Q Consensus 1070 tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs 1146 (1249)
.+. +++++. .|..-+..+.|++-. +++++|
T Consensus 266 ~~ds~~e~~~-----------------------------------------------~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 266 RQDSAIETVD-----------------------------------------------HHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred cchhhhhhhh-----------------------------------------------ccceEEeccccccccCceeeecc
Confidence 543 222222 122245666666543 999999
Q ss_pred CCCcEEEEeC
Q 000861 1147 TDLKIRRWDH 1156 (1249)
Q Consensus 1147 ~Dg~IriWDl 1156 (1249)
.|+.+++|+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999984
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=219.04 Aligned_cols=266 Identities=15% Similarity=0.216 Sum_probs=214.1
Q ss_pred ccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE
Q 000861 809 SFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL 887 (1249)
Q Consensus 809 ~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~ 887 (1249)
+..++.|.+.-+.+ +.++.+..|+||...|+.+.|+|+...+++++.|..|+||...... .......|.++|+
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s------~~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS------EPTSSRPHEEPVT 307 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc------Cccccccccccce
Confidence 34444455667888 8999999999999999999999999999999999999999987765 2456678999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeec--CCCCcEEEEEEecCCCCCccEEEEEECCCe
Q 000861 888 CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKD--TKEGAIVTLVNYNTDNCASHMFMYSTQNCG 965 (1249)
Q Consensus 888 sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~--~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~ 965 (1249)
.+..+|.|.||++++.||+..+.|+. .|.. +.... ...-.+++.+ |+|| |.++.+|+.||.
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~-----~g~~--------lt~vs~~~s~v~~ts~~-fHpD---gLifgtgt~d~~ 370 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDIS-----SGSQ--------LTVVSDETSDVEYTSAA-FHPD---GLIFGTGTPDGV 370 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEcc-----CCcE--------EEEEeeccccceeEEee-EcCC---ceEEeccCCCce
Confidence 99999999999999999999999988 2321 21111 1223477887 9999 889999999999
Q ss_pred EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 966 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 966 I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
|++||+..+.....| ++|.++|++++|+.+|.||++++.||.|++||+|..+..+++......++.+++| .+.|.
T Consensus 371 vkiwdlks~~~~a~F--pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f-D~SGt-- 445 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKF--PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF-DQSGT-- 445 (506)
T ss_pred EEEEEcCCccccccC--CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE-cCCCC--
Confidence 999999998877666 6799999999999999999999999999999999999999988777678999999 88888
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCC--ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCC
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENG--SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNE 1123 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg--~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~ 1123 (1249)
++..++.|=.|++++-.+. .+...+..
T Consensus 446 -------~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-------------------------------------------- 474 (506)
T KOG0289|consen 446 -------YLGIAGSDLQVYICKKKTKSWTEIKELAD-------------------------------------------- 474 (506)
T ss_pred -------eEEeecceeEEEEEecccccceeeehhhh--------------------------------------------
Confidence 8888866655555553332 22222221
Q ss_pred CCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeC
Q 000861 1124 PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1124 ~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl 1156 (1249)
|.+..+++.|.... +++++|.|..++++.+
T Consensus 475 ---~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 ---HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---cccccceeeecccceEEeeccchhheEEeec
Confidence 11245677777666 9999999999988764
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=9.2e-22 Score=227.03 Aligned_cols=278 Identities=18% Similarity=0.301 Sum_probs=222.7
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEE-EEEec-CCCEEEEEeC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALC-TMMLR-HSAQVVVGAC 903 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~s-l~fsp-dg~~Lasgs~ 903 (1249)
++-+.+.||...|..+++.+.. .++++|.||++++|+-...+.. ....+.+|.+-|.+ ++|.+ ++-.+++|+.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l----~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL----ETHAFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc----cceecccCcceeeccceeccccCcceEeecc
Confidence 5677899999999998887654 8999999999999998766532 23457777777766 88876 5557999999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecC
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
|++|.+|... +..++..+.+|++.|+++. ...+ + .+++|+.|.++++|-.. ++...+ .
T Consensus 80 D~~i~v~~~~-------------~~~P~~~LkgH~snVC~ls-~~~~---~-~~iSgSWD~TakvW~~~--~l~~~l--~ 137 (745)
T KOG0301|consen 80 DTTIIVFKLS-------------QAEPLYTLKGHKSNVCSLS-IGED---G-TLISGSWDSTAKVWRIG--ELVYSL--Q 137 (745)
T ss_pred cceEEEEecC-------------CCCchhhhhccccceeeee-cCCc---C-ceEecccccceEEecch--hhhccc--C
Confidence 9999999988 2236778899999999998 4444 2 59999999999999764 444444 6
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeE
Q 000861 984 PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I 1063 (1249)
+|...|.+++.-|++ .+++|+.|.+|++|.- ++.++++. +|..-|+.+++ .+++. +++|+.||.|
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~v-l~~~~----------flScsNDg~I 202 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAV-LDDSH----------FLSCSNDGSI 202 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEE-ecCCC----------eEeecCCceE
Confidence 799999999999988 8999999999999975 77888876 59999999999 88765 8999999999
Q ss_pred EEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec-CCCeE
Q 000861 1064 SLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL-PGGDL 1142 (1249)
Q Consensus 1064 ~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s-pdg~L 1142 (1249)
++|++ +|.++..+.+|.. -|.++... +++.+
T Consensus 203 r~w~~-~ge~l~~~~ghtn-----------------------------------------------~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTN-----------------------------------------------FVYSISMALSDGLI 234 (745)
T ss_pred EEEec-cCceeeeeeccce-----------------------------------------------EEEEEEecCCCCeE
Confidence 99999 6888877764332 67788744 45599
Q ss_pred EEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccc
Q 000861 1143 LTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDS 1222 (1249)
Q Consensus 1143 ~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~ 1222 (1249)
+++|+|+++|+|+.. ++..++.-| .-.
T Consensus 235 vs~gEDrtlriW~~~--e~~q~I~lP---------------------------------------------------tts 261 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD--ECVQVITLP---------------------------------------------------TTS 261 (745)
T ss_pred EEecCCceEEEeecC--ceEEEEecC---------------------------------------------------ccc
Confidence 999999999999987 555555422 236
Q ss_pred eeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1223 ILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1223 I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
|+++. +-++|. +++|+.||.|+||
T Consensus 262 iWsa~-~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 262 IWSAK-VLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred eEEEE-EeeCCC-EEEeccCceEEEE
Confidence 88888 435555 8889999999998
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.7e-22 Score=236.85 Aligned_cols=260 Identities=17% Similarity=0.246 Sum_probs=201.5
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccc---------------------------ccC---CCcc--------
Q 000861 881 LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHI---------------------------SRG---LGNV-------- 922 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~---------------------------~~~---~g~~-------- 922 (1249)
.|.+.|+++.|++||++||+||.||.|+||.+... ... .+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998630 000 0000
Q ss_pred --c-cc------cCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEE
Q 000861 923 --E-KY------SGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLV 993 (1249)
Q Consensus 923 --~-~~------~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~ 993 (1249)
. .+ -...+++.+.+|.+.|.++. |+.++ +|++++.|.+|++|++...+++..+. |...|||++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlS-WSKn~----fLLSSSMDKTVRLWh~~~~~CL~~F~---HndfVTcVa 416 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLS-WSKNN----FLLSSSMDKTVRLWHPGRKECLKVFS---HNDFVTCVA 416 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecc-cccCC----eeEeccccccEEeecCCCcceeeEEe---cCCeeEEEE
Confidence 0 00 00136778889999999999 99873 99999999999999999999888774 799999999
Q ss_pred EcC-CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 994 TGP-CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 994 ~sp-dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
|+| |.+++++|+-||.|+||++...+ +..|.. -..-|++++| .|+|+ +.++|+-+|.+++|+....+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~W~D-l~~lITAvcy-~PdGk---------~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK-VVDWND-LRDLITAVCY-SPDGK---------GAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe-eEeehh-hhhhheeEEe-ccCCc---------eEEEEEeccEEEEEEccCCe
Confidence 999 77999999999999999995544 444543 3467999999 99998 89999999999999998777
Q ss_pred eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCc
Q 000861 1073 CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLK 1150 (1249)
Q Consensus 1073 ~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~ 1150 (1249)
............ + . ..+ ..|+++.|.|.. .++..+.|.+
T Consensus 485 ~~~~~~I~~~~~------------------------K-------------k-~~~-~rITG~Q~~p~~~~~vLVTSnDSr 525 (712)
T KOG0283|consen 485 LVSDFHIRLHNK------------------------K-------------K-KQG-KRITGLQFFPGDPDEVLVTSNDSR 525 (712)
T ss_pred EEEeeeEeeccC------------------------c-------------c-ccC-ceeeeeEecCCCCCeEEEecCCCc
Confidence 665554322100 0 0 111 168999998876 6888889999
Q ss_pred EEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeee
Q 000861 1151 IRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVK 1230 (1249)
Q Consensus 1151 IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s 1230 (1249)
|||+|..+...+..+.|..- -...+ ... |+
T Consensus 526 IRI~d~~~~~lv~KfKG~~n------------------------------------------------~~SQ~-~As-fs 555 (712)
T KOG0283|consen 526 IRIYDGRDKDLVHKFKGFRN------------------------------------------------TSSQI-SAS-FS 555 (712)
T ss_pred eEEEeccchhhhhhhccccc------------------------------------------------CCcce-eee-Ec
Confidence 99999987777666665430 01112 233 77
Q ss_pred cCCCEEEEEeCCCeEEEcC
Q 000861 1231 LNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1231 ~dg~~LaSgs~DG~IkVWd 1249 (1249)
.||++||+|++|..|+||+
T Consensus 556 ~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 556 SDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCCCEEEEeecCceEEEEe
Confidence 8999999999999999996
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-22 Score=230.96 Aligned_cols=263 Identities=16% Similarity=0.284 Sum_probs=216.0
Q ss_pred cccCcee---EEEEc-CCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEE
Q 000861 833 EHCSAVN---EIAIS-HDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIH 908 (1249)
Q Consensus 833 ~H~~~V~---~la~s-pdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~ 908 (1249)
.|...|+ .+..+ |.+++|.|||.||.|++|+........+-+...++..|...|..+..+.+++.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555555 44444 4677899999999999999876542211123457788999999999999999999999999999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEe-cCCCCCccEEEEEECCCeEEEEEcCCCcc--ceeee----
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNY-NTDNCASHMFMYSTQNCGIHLWDTRSNSN--TWTLK---- 981 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~f-s~d~~~g~~L~sgs~dg~I~iwDlrt~~~--~~~l~---- 981 (1249)
+|+... . + ..+..++..|.+.|.|++ + .++ ...+++|+-|+.|.+||+.++.. +..+.
T Consensus 99 ~W~~~~-~---~-------~~c~stir~H~DYVkcla-~~ak~---~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 99 VWNAHK-D---N-------TFCMSTIRTHKDYVKCLA-YIAKN---NELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred Eeeccc-C---c-------chhHhhhhcccchheeee-ecccC---ceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 999981 1 1 135677788999999999 6 555 56999999999999999998732 22221
Q ss_pred --c-CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 982 --A-IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 982 --~-~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
. .++...|++++.++.|..+++|+..+.+++||.|+++.+..++ +|...|..+.. +++|. .+++++
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~-~dDGt---------~~ls~s 232 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLV-NDDGT---------RLLSAS 232 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEE-cCCCC---------eEeecC
Confidence 1 2678899999999999999999999999999999999998887 79999999999 99998 899999
Q ss_pred CCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecC
Q 000861 1059 GCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLP 1138 (1249)
Q Consensus 1059 ~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~sp 1138 (1249)
.||+|++||+...+|+.++..|.. +|+++..+|
T Consensus 233 SDgtIrlWdLgqQrCl~T~~vH~e-----------------------------------------------~VWaL~~~~ 265 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRCLATYIVHKE-----------------------------------------------GVWALQSSP 265 (735)
T ss_pred CCceEEeeeccccceeeeEEeccC-----------------------------------------------ceEEEeeCC
Confidence 999999999999999999885443 788888887
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1139 GG-DLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1139 dg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
+= .+++|+.||.|..=|+.++..+..++.+
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~ 296 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKE 296 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecC
Confidence 77 9999999999999999997666655543
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.4e-23 Score=220.53 Aligned_cols=269 Identities=15% Similarity=0.201 Sum_probs=220.6
Q ss_pred ccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE
Q 000861 809 SFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL 887 (1249)
Q Consensus 809 ~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~ 887 (1249)
+++++.|+..++|+ .+..++.+|+.|.+.|..|++.. ..++|+++|.+|+.|.+... +..++.+.+ .+.
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-------p~~tilg~s-~~~ 151 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-------PLHTILGKS-VYL 151 (433)
T ss_pred hhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-------cceeeeccc-ccc
Confidence 45666688899999 67789999999999999999987 67899999999999998763 355666654 377
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEE
Q 000861 888 CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIH 967 (1249)
Q Consensus 888 sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~ 967 (1249)
.+.-+..+..++++|.+ |.|||... ..+++.+......+.++. |+|... .+|++|+.|+.|.
T Consensus 152 gIdh~~~~~~FaTcGe~--i~IWD~~R-------------~~Pv~smswG~Dti~svk-fNpvET--sILas~~sDrsIv 213 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQ--IDIWDEQR-------------DNPVSSMSWGADSISSVK-FNPVET--SILASCASDRSIV 213 (433)
T ss_pred ccccccccccccccCce--eeeccccc-------------CCccceeecCCCceeEEe-cCCCcc--hheeeeccCCceE
Confidence 78777778889988764 89999971 124666676778899998 999863 4888899999999
Q ss_pred EEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcc
Q 000861 968 LWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAV 1046 (1249)
Q Consensus 968 iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~ 1046 (1249)
+||+|++.++..+.. .-.-..+||+|.+-.+++|+.|..++.||+|.. .++..+. +|.+.|..+.| +|.|+
T Consensus 214 LyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdf-sptG~--- 285 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDF-SPTGQ--- 285 (433)
T ss_pred EEecccCCccceeee---eccccceecCccccceeeccccccceehhhhhhcccchhhc-ccceeEEEecc-CCCcc---
Confidence 999999998877654 445678899998889999999999999999965 4555544 69999999999 99998
Q ss_pred cCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCC
Q 000861 1047 STTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPP 1126 (1249)
Q Consensus 1047 ~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~ 1126 (1249)
-+++|+-|.+|+||.+..+....++.. .
T Consensus 286 ------EfvsgsyDksIRIf~~~~~~SRdiYht----------------------------------------------k 313 (433)
T KOG0268|consen 286 ------EFVSGSYDKSIRIFPVNHGHSRDIYHT----------------------------------------------K 313 (433)
T ss_pred ------hhccccccceEEEeecCCCcchhhhhH----------------------------------------------h
Confidence 799999999999999988876555442 1
Q ss_pred CCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1127 RLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1127 ~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
....|.|+.|+.|. ++++||+|+.||+|.....+..-++
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 22379999999999 9999999999999998877665444
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.7e-21 Score=225.86 Aligned_cols=364 Identities=13% Similarity=0.189 Sum_probs=254.7
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCcccccccee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
+++.+|--...+.+..+++.-+.+ ..++.+.+|+...++|++++|..||. .+|+|+..|.+-+||++..... .
T Consensus 207 ~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~-----~ 281 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI-----N 281 (910)
T ss_pred EeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee-----e
Confidence 444455444445555466777888 67899999996679999999999997 6777888899999999986632 3
Q ss_pred eEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 877 LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.+...|.+.|....|.|....+++++.|..+++|-.+ .+.+ ....+|.-.+|..+..|+..+... |..
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD-~~dg--------~pR~LR~R~GHs~Pp~~irfy~~~---g~~ 349 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD-SGDG--------VPRLLRSRGGHSAPPSCIRFYGSQ---GHF 349 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEee-CCCC--------cchheeeccCCCCCchheeeeccC---cEE
Confidence 3556788889999999999999999999999999777 2211 122345555566666666522222 445
Q ss_pred EEEEECCCeE-----------------------------------------------------------------EEEEc
Q 000861 957 FMYSTQNCGI-----------------------------------------------------------------HLWDT 971 (1249)
Q Consensus 957 L~sgs~dg~I-----------------------------------------------------------------~iwDl 971 (1249)
+.+++.|++. +.|+.
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 5555555544 44444
Q ss_pred CCCcc-ceeeec---CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccc--cCCCCCeeEEEEEcCCCCCc
Q 000861 972 RSNSN-TWTLKA---IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ--YSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 972 rt~~~-~~~l~~---~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~--~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
+.... .+.++. ......+++++.+++|++.+.|++.|.|.+|++.+|....++. ..|.++|+.++. ...++
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~-D~~n~-- 506 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV-DGTNR-- 506 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe-cCCCc--
Confidence 43332 222211 1123678999999999999999999999999999999998883 468899999999 55555
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCC
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPP 1125 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~ 1125 (1249)
.+++++.+|-+++||..+......++.... +..+.+... ....+....+....+.......-.....
T Consensus 507 -------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-----~~~iv~hr~-s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 507 -------LLVSAGADGILKFWDFKKKVLKKSLRLGSS-----ITGIVYHRV-SDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred -------eEEEccCcceEEEEecCCcceeeeeccCCC-----cceeeeeeh-hhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 899999999999999998876666653221 122211110 0000011111111111111111223446
Q ss_pred CCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhH
Q 000861 1126 PRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTA 1204 (1249)
Q Consensus 1126 ~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~ 1204 (1249)
+|...|++++||||| +|++++.|++||+||+.++..+..+.
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-------------------------------------- 615 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-------------------------------------- 615 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--------------------------------------
Confidence 888999999999999 99999999999999999988765553
Q ss_pred HHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCC-CeEEEc
Q 000861 1205 KAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRD-GAIKVW 1248 (1249)
Q Consensus 1205 ~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~D-G~IkVW 1248 (1249)
-.+.++++. |+|+|.+|||+..| .-|++|
T Consensus 616 --------------vd~~~~sls-~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 616 --------------VDSPCTSLS-FSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred --------------cCCcceeeE-ECCCCCEEEEEEecCceEEEE
Confidence 235678898 99999999999999 568888
No 94
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=9.3e-21 Score=229.43 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=176.4
Q ss_pred EECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC-CCEEEEEeCCCeEEEEEccccccCCCccccccCccce
Q 000861 853 ASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH-SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDI 931 (1249)
Q Consensus 853 gs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i 931 (1249)
|+.+|.|++|+..+.. ....+.+|.+.|.+++|+|+ +++|++|+.||+|++||+...... .... ...+
T Consensus 50 GG~~gvI~L~~~~r~~------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---~~~i--~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---VKEI--KDPQ 118 (568)
T ss_pred CCceeEEEeeecCCCc------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---cccc--ccce
Confidence 6778999999987653 45678899999999999996 789999999999999999721100 0000 1234
Q ss_pred eeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEE
Q 000861 932 KKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLT 1011 (1249)
Q Consensus 932 ~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~ 1011 (1249)
..+.+|.+.|.++. |+|++ ..++++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+
T Consensus 119 ~~L~gH~~~V~sVa-f~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 119 CILKGHKKKISIID-WNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EEeecCCCcEEEEE-ECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 56778999999999 99984 2356789999999999999998776663 457899999999999999999999999
Q ss_pred EEeCCCCCcccccccCCCCCeeEEEEE----cCCCCCcccCCCCCEEEEEECCC----eEEEEECCC-CceeEEEecccC
Q 000861 1012 LWDLRFLVPVNSWQYSQVCPIEKMCLF----VPPPNAAVSTTARPLIYVAAGCN----EVSLWNAEN-GSCHQVLRTANY 1082 (1249)
Q Consensus 1012 lWDlr~~~~l~s~~~~~~~~I~~l~~~----sp~g~~~~~~~~~~~l~t~s~Dg----~I~vWDl~t-g~~~~~l~~~~~ 1082 (1249)
+||++++..+..+. +|.+.+....++ ++++. ++++++.|+ +|++||+++ ++++..+.....
T Consensus 193 IwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~---------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~ 262 (568)
T PTZ00420 193 IIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDN---------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA 262 (568)
T ss_pred EEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCC---------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence 99999999888765 466655433321 35655 788887764 799999985 444443321100
Q ss_pred CCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCC
Q 000861 1083 DGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1083 ~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
...+......++| ++++|+.|+.||+|++..+.
T Consensus 263 ---------------------------------------------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 263 ---------------------------------------------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ---------------------------------------------ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 0022233334557 88899999999999997653
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-22 Score=230.07 Aligned_cols=244 Identities=19% Similarity=0.282 Sum_probs=202.2
Q ss_pred CCCCCccccccCCCCCccCC---CC----cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 804 LTGLPSFVRTSSIPDSGWRP---RG----ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 804 ~~G~~~~~~s~~~~~~~W~~---~G----~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
+.|..+++++.|...++|+. .+ ..++.++.|.+.|+.++...+|+.|+++|.|-+|++|+...+.. -+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~----~c~ 110 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT----FCM 110 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc----hhH
Confidence 34556777777888999982 23 25889999999999999999999999999999999999987641 145
Q ss_pred eEeeccCCceEEEEE-ecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCc
Q 000861 877 LTYHLEGSRALCTMM-LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~f-spdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g 954 (1249)
.++..|...|.|+++ -++...+|+||-|+.|.+||++ .+.. ..+..+... ....+. ++...|.+++ .++. |
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin-~~~~-~l~~s~n~~-t~~sl~sG~k~siYSLA-~N~t---~ 183 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN-TGTA-TLVASFNNV-TVNSLGSGPKDSIYSLA-MNQT---G 183 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEcc-Ccch-hhhhhcccc-ccccCCCCCccceeeee-cCCc---c
Confidence 578889999999999 7788899999999999999998 2210 011112111 112222 6778899998 7777 7
Q ss_pred cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeE
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEK 1034 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~ 1034 (1249)
..+++|+..+.+++||.++++.+..+ .+|...|.++..++||+.+++|++||+|++||++..+++.++.. |...|++
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkL--rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWa 260 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKL--RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWA 260 (735)
T ss_pred eEEEecCcccceEEeccccccceeee--eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEE
Confidence 79999999999999999999987777 47999999999999999999999999999999999999999775 7777999
Q ss_pred EEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC
Q 000861 1035 MCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG 1071 (1249)
Q Consensus 1035 l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg 1071 (1249)
+.. +|+-. .+++|+.||.|..=|+++.
T Consensus 261 L~~-~~sf~---------~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 261 LQS-SPSFT---------HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred Eee-CCCcc---------eEEecCCCCcEEecccCCc
Confidence 998 88777 8999999999999999884
No 96
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=5.1e-21 Score=231.69 Aligned_cols=248 Identities=12% Similarity=0.135 Sum_probs=179.9
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCC-CCEEEEEECCCcEEEEECCCCccc-cc-cceeeEeeccCCceEEEEE
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHD-HSFFVSASDDSTVKVWDSRKLEKD-IS-FRSRLTYHLEGSRALCTMM 891 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spd-g~~laTgs~DgtVkIWD~~~~~~~-~~-~~~~~t~~~h~~~V~sl~f 891 (1249)
...++|+ .+...+..+.+|.++|.+++|+|+ +.+|+|||.||+|+|||+.+.... .. ..+...+.+|...|.+++|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 4567898 456788999999999999999997 789999999999999999864311 10 1234467889999999999
Q ss_pred ecCCCE-EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEE
Q 000861 892 LRHSAQ-VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWD 970 (1249)
Q Consensus 892 spdg~~-Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwD 970 (1249)
+|++.. +++|+.||+|++||+. . +. .+..+. +...|.++. |+++ |.++++++.|+.|++||
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~-t----g~--------~~~~i~-~~~~V~Sls-wspd---G~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIE-N----EK--------RAFQIN-MPKKLSSLK-WNIK---GNLLSGTCVGKHMHIID 195 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECC-C----Cc--------EEEEEe-cCCcEEEEE-ECCC---CCEEEEEecCCEEEEEE
Confidence 998875 5789999999999998 1 21 123333 456799998 9999 77999999999999999
Q ss_pred cCCCccceeeecCCCCCceEEE-----EEcCCCCEEEEEecCC----cEEEEeCCC-CCcccccccCCCCCeeEEEEEcC
Q 000861 971 TRSNSNTWTLKAIPEEGYVSSL-----VTGPCGNWFVSGSSRG----VLTLWDLRF-LVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 971 lrt~~~~~~l~~~~h~~~I~sl-----~~spdg~~L~sgs~dG----~I~lWDlr~-~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
+++++.+.++. +|.+.+.+. .|++++.++++++.++ .|++||++. +.++..+.......+....|..+
T Consensus 196 ~Rsg~~i~tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 196 PRKQEIASSFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred CCCCcEEEEEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 99998887774 477654432 3458888999887764 799999994 66666654322222222233133
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
++. ++++|++|+.|++|++..+... .+.. .........+.|.|
T Consensus 274 tg~---------l~lsGkGD~tIr~~e~~~~~~~-~l~~--~~s~~p~~g~~f~P 316 (568)
T PTZ00420 274 TGL---------IYLIGKGDGNCRYYQHSLGSIR-KVNE--YKSCSPFRSFGFLP 316 (568)
T ss_pred CCC---------EEEEEECCCeEEEEEccCCcEE-eecc--cccCCCccceEEcc
Confidence 454 7888999999999999877532 2221 22223344555655
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1e-21 Score=225.12 Aligned_cols=311 Identities=16% Similarity=0.207 Sum_probs=234.5
Q ss_pred CCCCCccCCC-----CcEEEEeccccCceeEEEEcCC-----------CCEEEEEECCCcEEEEECCCCccccccce---
Q 000861 815 SIPDSGWRPR-----GILVAHLQEHCSAVNEIAISHD-----------HSFFVSASDDSTVKVWDSRKLEKDISFRS--- 875 (1249)
Q Consensus 815 ~~~~~~W~~~-----G~lv~~L~~H~~~V~~la~spd-----------g~~laTgs~DgtVkIWD~~~~~~~~~~~~--- 875 (1249)
+....+|+.+ |++-. +--|...|+.+..-|- ...|+|||.||+|++||+..+...-.++.
T Consensus 345 dhSlYvWDvrD~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred CceEEEEeccccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 5667789832 44443 4459999998887661 12589999999999999986433222110
Q ss_pred -----------------------------eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcccccc
Q 000861 876 -----------------------------RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS 926 (1249)
Q Consensus 876 -----------------------------~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~ 926 (1249)
..++. ....+.+++.+|+|++||+|..-|+++||++.
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq------------- 489 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ------------- 489 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCCcceecccCccCceEEEEeh-------------
Confidence 00111 12258999999999999999999999999997
Q ss_pred CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC-ccceeeecCCCCCceEEEEEcCCC--CEEEE
Q 000861 927 GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN-SNTWTLKAIPEEGYVSSLVTGPCG--NWFVS 1003 (1249)
Q Consensus 927 ~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~-~~~~~l~~~~h~~~I~sl~~spdg--~~L~s 1003 (1249)
.......++.|+.+|.|+. |+...-..++|++++.|.-|++||+... ..+.++ .+|...|+++.|--.| ..+++
T Consensus 490 ~l~~~~~~eAHesEilcLe-yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl--d~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLE-YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL--DGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred hhhhhhheecccceeEEEe-ecCchhhhHhhhhccCCceEEEEecccccchhhhh--cccccceeEEEEeecCCceEEEe
Confidence 1223556788999999998 7653222468999999999999998654 445555 5699999999998877 78889
Q ss_pred EecCCcEEEEeCCCCCccccccc----CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1004 GSSRGVLTLWDLRFLVPVNSWQY----SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1004 gs~dG~I~lWDlr~~~~l~s~~~----~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
++.|..|.+--.+.......+.. -....++.|+. .|..+ ++++++.|..|+|||+++|+..+.|++
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V-dp~~k---------~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV-DPTSK---------LVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeee-CCCcc---------eEEEEecccceEEEeccccceeeeecc
Confidence 99887765433321111111111 12346888999 88877 999999999999999999999999986
Q ss_pred ccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1080 ANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1080 ~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
..++. +..-.+...|.| |++|...|.++.++|+.+
T Consensus 637 s~~~e--------------------------------------------G~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 637 SRDHE--------------------------------------------GDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred cccCC--------------------------------------------CceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 54432 244567778999 999999999999999999
Q ss_pred CCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEE
Q 000861 1159 PGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLIS 1238 (1249)
Q Consensus 1159 ~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaS 1238 (1249)
+++.... .||...|+.+. |.+|-+.|+|
T Consensus 673 gEcvA~m---------------------------------------------------~GHsE~VTG~k-F~nDCkHlIS 700 (1080)
T KOG1408|consen 673 GECVAQM---------------------------------------------------TGHSEAVTGVK-FLNDCKHLIS 700 (1080)
T ss_pred chhhhhh---------------------------------------------------cCcchheeeee-ecccchhhee
Confidence 9885433 37899999999 8999999999
Q ss_pred EeCCCeEEEcC
Q 000861 1239 SSRDGAIKVWK 1249 (1249)
Q Consensus 1239 gs~DG~IkVWd 1249 (1249)
++.||+|.||+
T Consensus 701 vsgDgCIFvW~ 711 (1080)
T KOG1408|consen 701 VSGDGCIFVWK 711 (1080)
T ss_pred ecCCceEEEEE
Confidence 99999999995
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=204.09 Aligned_cols=270 Identities=18% Similarity=0.249 Sum_probs=207.6
Q ss_pred EEEEEECCCcEEEEECCCCc------cccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcc
Q 000861 849 FFVSASDDSTVKVWDSRKLE------KDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV 922 (1249)
Q Consensus 849 ~laTgs~DgtVkIWD~~~~~------~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~ 922 (1249)
.|+.|++...|.-+++.-.. ...++.+...+..|.+.|++++. ++.++|+||.|.+|+|||+. ..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~-k~------ 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMR-KR------ 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEecc-ch------
Confidence 36777777766666554221 22344567788899999999998 58899999999999999998 11
Q ss_pred ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEE
Q 000861 923 EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFV 1002 (1249)
Q Consensus 923 ~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~ 1002 (1249)
..+..+-.|.+.|+++. |.+... ...|++|+.||.|.+|+...-..+.+++ +|.+.|+.++++|.++..+
T Consensus 74 ------~qlg~ll~HagsitaL~-F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 74 ------KQLGILLSHAGSITALK-FYPPLS-KSHLLSGSDDGHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred ------hhhcceeccccceEEEE-ecCCcc-hhheeeecCCCcEEEEEcCCeEEeeeec--ccccccceeEecCCCceEE
Confidence 13445566899999999 766521 3489999999999999999998888885 4888899999999999999
Q ss_pred EEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccC
Q 000861 1003 SGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANY 1082 (1249)
Q Consensus 1003 sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~ 1082 (1249)
+.+.|+.+++||+-.|+.-......+. -+.+.| +|.|. ++++++ .+.|-+|.+++......+...
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w-~~~Gd---------~F~v~~-~~~i~i~q~d~A~v~~~i~~~-- 208 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSW-SPQGD---------HFVVSG-RNKIDIYQLDNASVFREIENP-- 208 (362)
T ss_pred EEcCCceeeeehhhcCccceeeccCCc--ceeeEE-cCCCC---------EEEEEe-ccEEEEEecccHhHhhhhhcc--
Confidence 999999999999988887666554443 344889 89887 555554 456889988766543322210
Q ss_pred CCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCcc
Q 000861 1083 DGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRS 1162 (1249)
Q Consensus 1083 ~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~ 1162 (1249)
..+.|+.|...+.|++|++|+.|++||..+....
T Consensus 209 ----------------------------------------------~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 209 ----------------------------------------------KRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred ----------------------------------------------ccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 1567777776669999999999999999875443
Q ss_pred EEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEee-ecCCCEEEEEeC
Q 000861 1163 YCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSV-KLNQRLLISSSR 1241 (1249)
Q Consensus 1163 ~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~-s~dg~~LaSgs~ 1241 (1249)
.. +.+|...|-++.++ .|++.+|+|+|.
T Consensus 243 ~~---------------------------------------------------~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 243 TE---------------------------------------------------FLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred ee---------------------------------------------------eecchhheeeeEEEecCCceEEEEecc
Confidence 32 23789999999854 466899999999
Q ss_pred CCeEEEcC
Q 000861 1242 DGAIKVWK 1249 (1249)
Q Consensus 1242 DG~IkVWd 1249 (1249)
||.|+|||
T Consensus 272 DG~I~vWd 279 (362)
T KOG0294|consen 272 DGFIKVWD 279 (362)
T ss_pred CceEEEEE
Confidence 99999997
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=203.58 Aligned_cols=307 Identities=14% Similarity=0.250 Sum_probs=210.9
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccce-eeEeeccCCceEEEEEecCCCEEEEE-eCCC
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRS-RLTYHLEGSRALCTMMLRHSAQVVVG-ACDG 905 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~-~~t~~~h~~~V~sl~fspdg~~Lasg-s~Dg 905 (1249)
+..|++|.+.|++++|+.||++|||++.|++|+||++..-+.. ..++ +..... +.-+.+.|.||.+.+++. -...
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh-hhhHhhccccC--CCceEEEECCCcceEEEEEccCC
Confidence 5579999999999999999999999999999999999875421 1111 112221 246789999998766654 4456
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
++++|.+.....+.+.. .+........-+.|.-.+..+- ...+ +.++++++.|..|.+||++ |+.+..+.. .
T Consensus 156 ~l~vyk~~K~~dG~~~~-~~v~~D~~~f~~kh~v~~i~iG-iA~~---~k~imsas~dt~i~lw~lk-Gq~L~~idt--n 227 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSH-HFVHIDNLEFERKHQVDIINIG-IAGN---AKYIMSASLDTKICLWDLK-GQLLQSIDT--N 227 (420)
T ss_pred EEEEEEeeecccCCCCc-ccccccccccchhcccceEEEe-ecCC---ceEEEEecCCCcEEEEecC-Cceeeeecc--c
Confidence 79999887332222211 1111111122233555666665 4444 6799999999999999999 888777743 4
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC------cccccc-cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 986 EGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV------PVNSWQ-YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 986 ~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~------~l~s~~-~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
...-+..+++|+|+++++++..--|++|.+-+++ ..+.+. .+|...|..++| +++.. .+++.+
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-sn~S~---------r~vtvS 297 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-SNSST---------RAVTVS 297 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-CCCcc---------eeEEEe
Confidence 4556677899999999999999999999975432 222222 379999999999 99887 899999
Q ss_pred CCCeEEEEECCC----CceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEE
Q 000861 1059 GCNEVSLWNAEN----GSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSL 1134 (1249)
Q Consensus 1059 ~Dg~I~vWDl~t----g~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl 1134 (1249)
.||++++||..- ++-.+.++.... |.. .....-..+
T Consensus 298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~---------------pl~-------------------------aag~~p~RL 337 (420)
T KOG2096|consen 298 KDGKWRIWDTDVRYEAGQDPKILKEGSA---------------PLH-------------------------AAGSEPVRL 337 (420)
T ss_pred cCCcEEEeeccceEecCCCchHhhcCCc---------------chh-------------------------hcCCCceEE
Confidence 999999999752 111111111000 000 000122378
Q ss_pred eecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhccc
Q 000861 1135 LPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATD 1214 (1249)
Q Consensus 1135 ~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1214 (1249)
..+|.|.+++.+....|.++..++++...++
T Consensus 338 ~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~------------------------------------------------- 368 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKVFASEDGKDYPEL------------------------------------------------- 368 (420)
T ss_pred EeCCCCcEEEeecCCceEEEEcccCccchhH-------------------------------------------------
Confidence 8899995555566778999998876652222
Q ss_pred ccCCcccceeEEEeeecCCCEEEEEeCCCeEEE
Q 000861 1215 SAGCHRDSILSLGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1215 ~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
-+.|...|++++ |+++|++++|+|+ ..++|
T Consensus 369 -e~~h~~~Is~is-~~~~g~~~atcGd-r~vrv 398 (420)
T KOG2096|consen 369 -EDIHSTTISSIS-YSSDGKYIATCGD-RYVRV 398 (420)
T ss_pred -HHhhcCceeeEE-ecCCCcEEeeecc-eeeee
Confidence 125899999999 9999999999884 44444
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=7.5e-21 Score=200.77 Aligned_cols=254 Identities=13% Similarity=0.193 Sum_probs=192.1
Q ss_pred cCceeEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 835 CSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 835 ~~~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
.+.|.+|+||| ...+++.||.||+||+|+++...... ......|.++|.+++|+.+|..+++|+.|+.+++||+.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc----chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 57899999999 45577799999999999998742111 13445688999999999999999999999999999998
Q ss_pred ccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEE
Q 000861 914 HISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLV 993 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~ 993 (1249)
++ .+..+..|.++|.++. |-+... -..|++|+.|.+|+.||+|....+.++.. .+.++++.
T Consensus 103 -----S~---------Q~~~v~~Hd~pvkt~~-wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~L---PeRvYa~D 163 (347)
T KOG0647|consen 103 -----SG---------QVSQVAAHDAPVKTCH-WVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQL---PERVYAAD 163 (347)
T ss_pred -----CC---------CeeeeeecccceeEEE-EecCCC-cceeEecccccceeecccCCCCeeeeeec---cceeeehh
Confidence 22 2566677999999998 544421 34899999999999999999999888876 34555544
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCCc-ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC-
Q 000861 994 TGPCGNWFVSGSSRGVLTLWDLRFLVP-VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG- 1071 (1249)
Q Consensus 994 ~spdg~~L~sgs~dG~I~lWDlr~~~~-l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg- 1071 (1249)
. ....+++++.+..|.+|+++.+.. .+....+..-.+++++. .++.. ..+.|+-.|.+.+..+..+
T Consensus 164 v--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~-f~d~~---------~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 164 V--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC-FQDKD---------GFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred c--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE-EecCC---------ceEeeeecceEEEEecCCCC
Confidence 3 345889999999999999976543 33333444557889998 67766 4588999999999988876
Q ss_pred -ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCC
Q 000861 1072 -SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDL 1149 (1249)
Q Consensus 1072 -~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg 1149 (1249)
+.--.|+.|..... +. +....|++++|+|.. .|+|+|.||
T Consensus 232 ~~~nFtFkCHR~~~~--~~------------------------------------~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 232 PKDNFTFKCHRSTNS--VN------------------------------------DDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred ccCceeEEEeccCCC--CC------------------------------------CceEEecceEeecccceEEEecCCc
Confidence 33334554433110 00 011278999999976 999999999
Q ss_pred cEEEEeCCCCCc
Q 000861 1150 KIRRWDHCSPGR 1161 (1249)
Q Consensus 1150 ~IriWDl~~~~~ 1161 (1249)
+..+||-....+
T Consensus 274 tf~FWDkdar~k 285 (347)
T KOG0647|consen 274 TFSFWDKDARTK 285 (347)
T ss_pred eEEEecchhhhh
Confidence 999999865444
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.88 E-value=8.3e-19 Score=213.03 Aligned_cols=274 Identities=18% Similarity=0.224 Sum_probs=198.2
Q ss_pred cchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCC------hHHHHHhhHHHHHHhcCC-CChhHHHHHHHHHHHHhc
Q 000861 191 GIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFID------DEDRLQRVLPHVIAMLSD-PAAIVRCAALETLCDILP 263 (1249)
Q Consensus 191 ~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~------de~~l~~ilP~~~~ll~D-~~~~VR~~A~~~l~~~l~ 263 (1249)
-+.=+|+.+.+++++ ....+|..|++-|.++-.-+. --..-+.|+|-+-+|+.| .+-.||.+=+.+|+++.+
T Consensus 459 ~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 344599999999999 999999999998888766553 235778899999999999 788999999998887664
Q ss_pred ccc---------------ccCCCC------Ccc----hhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000861 264 LVR---------------NFPPSD------AKI----FPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSI 318 (1249)
Q Consensus 264 ~v~---------------~~~~~~------~~i----f~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~ 318 (1249)
..- ..+-++ .+- ..+-+=-.+..|..|++..||.++-++|..|....+|-..
T Consensus 538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--- 614 (1431)
T KOG1240|consen 538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--- 614 (1431)
T ss_pred HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---
Confidence 311 111110 000 1111223456778999999999999998888766552110
Q ss_pred HhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccc
Q 000861 319 RLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQ 398 (1249)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~ 398 (1249)
| +.|++.+-+.|. |.+...|-|+.++|..+|.|.|.+.
T Consensus 615 -------------------------------N---------D~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 615 -------------------------------N---------DVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred -------------------------------c---------cchHHHHHHHhc--CccHHHHHHHHhhccceEEEEeeee
Confidence 0 577888888896 5589999999999999999999999
Q ss_pred cchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhc--ccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCch
Q 000861 399 SNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCF--FVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRK 476 (1249)
Q Consensus 399 ~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~--~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~ 476 (1249)
..+.|||.|..-|.|..+.|=...++++..++. ++-+..+ ..|+-+..=.|--|...||.+++..+....+. +.+
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~--ls~ 729 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ--LSA 729 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh--hhh
Confidence 999999999999999999999999999988884 4445444 23444555557788899999999988887663 222
Q ss_pred -HHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCC
Q 000861 477 -RILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPAS 535 (1249)
Q Consensus 477 -~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~ 535 (1249)
....-++|.+-||+.-| +..+.+ .+.+..+++.+|+.
T Consensus 730 advyc~l~P~irpfl~~~-----------v~~i~s-----------~~~LlsclkpPVsR 767 (1431)
T KOG1240|consen 730 ADVYCKLMPLIRPFLERP-----------VIQIES-----------KEVLLSCLKPPVSR 767 (1431)
T ss_pred hhheEEeehhhHHhhhcc-----------Hhhhcc-----------hHHHHHHhcCCCcH
Confidence 22223555655555522 222222 35667777888775
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.3e-21 Score=201.91 Aligned_cols=246 Identities=15% Similarity=0.208 Sum_probs=200.4
Q ss_pred CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC--EEEEEe
Q 000861 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA--QVVVGA 902 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~--~Lasgs 902 (1249)
-.++..+..|.++|++++++ +.++||||.|-+|+|||+.+... ...+-.|.+.|+++.|.++-. .|++|+
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q------lg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ------LGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh------hcceeccccceEEEEecCCcchhheeeec
Confidence 34567788999999999997 88999999999999999998653 446677899999999999764 899999
Q ss_pred CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec
Q 000861 903 CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 903 ~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~ 982 (1249)
.||.|.+|++. ....+..+++|.+.|+.+. .+|. +++-++.+.|+.++.||+-.|+....+..
T Consensus 105 dDG~i~iw~~~-------------~W~~~~slK~H~~~Vt~ls-iHPS---~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 105 DDGHIIIWRVG-------------SWELLKSLKAHKGQVTDLS-IHPS---GKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred CCCcEEEEEcC-------------CeEEeeeecccccccceeE-ecCC---CceEEEEcCCceeeeehhhcCccceeecc
Confidence 99999999998 2346888999999999999 9999 78999999999999999999998777754
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe
Q 000861 983 IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE 1062 (1249)
Q Consensus 983 ~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~ 1062 (1249)
....+.+.|+|.|.+++.+..+ .|-+|.+.+......+.. ...+.++.| . ++. .+++|+.|+.
T Consensus 168 ---~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~--~~r~l~~~~-l-~~~---------~L~vG~d~~~ 230 (362)
T KOG0294|consen 168 ---KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN--PKRILCATF-L-DGS---------ELLVGGDNEW 230 (362)
T ss_pred ---CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc--cccceeeee-c-CCc---------eEEEecCCce
Confidence 3344559999999998888766 688999987766665543 245667666 3 333 7999999999
Q ss_pred EEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEee--cCCC
Q 000861 1063 VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLP--LPGG 1140 (1249)
Q Consensus 1063 I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~--spdg 1140 (1249)
|++||-.++.+...+..|. ..|-++.+ .|++
T Consensus 231 i~~~D~ds~~~~~~~~AH~-----------------------------------------------~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHE-----------------------------------------------NRVKDIASYTNPEH 263 (362)
T ss_pred EEEeccCCCccceeeecch-----------------------------------------------hheeeeEEEecCCc
Confidence 9999998877666665432 35666664 3556
Q ss_pred -eEEEEeCCCcEEEEeCCCC
Q 000861 1141 -DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1141 -~L~tgs~Dg~IriWDl~~~ 1159 (1249)
+|+|+|+||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 9999999999999999765
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=3.2e-21 Score=233.97 Aligned_cols=299 Identities=14% Similarity=0.147 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCccccc--cCCCCCccCCC-------------CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEE
Q 000861 798 ASSPADLTGLPSFVRT--SSIPDSGWRPR-------------GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVW 862 (1249)
Q Consensus 798 ~~~~~s~~G~~~~~~s--~~~~~~~W~~~-------------G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIW 862 (1249)
.++..+|+|...++++ .|....+|+.. -+++.+...|.++|+|+.|+|||++||+||+|+.|.||
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 3566778887766665 34445577721 34677888899999999999999999999999999999
Q ss_pred ECCC-----------Cc-cccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccc
Q 000861 863 DSRK-----------LE-KDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISD 930 (1249)
Q Consensus 863 D~~~-----------~~-~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~ 930 (1249)
+... +. ....++....+.+|.+.|..++|+|++.+|++++.|++|.+|+.. ....
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-------------tF~~ 163 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-------------TFEL 163 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc-------------ccee
Confidence 9873 11 123456788999999999999999999999999999999999987 1135
Q ss_pred eeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec----CCCCCceEEEEEcCCCCEEEEEec
Q 000861 931 IKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA----IPEEGYVSSLVTGPCGNWFVSGSS 1006 (1249)
Q Consensus 931 i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~----~~h~~~I~sl~~spdg~~L~sgs~ 1006 (1249)
++.+++|.+.|-.+. |.|- |+++++-+.|++|++|++.+-.....+.. .+.....+.+.|+|||.+|+++..
T Consensus 164 ~~vl~~H~s~VKGvs-~DP~---Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVS-WDPI---GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeecccccccceE-ECCc---cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 888999999999999 9999 88999999999999999776555544432 123456788999999999998643
Q ss_pred ----CCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCC----cccCCCC--C--EEEEEECCCeEEEEECCCCcee
Q 000861 1007 ----RGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA----AVSTTAR--P--LIYVAAGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 1007 ----dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~----~~~~~~~--~--~l~t~s~Dg~I~vWDl~tg~~~ 1074 (1249)
-.++.|.+-.+...-..+ .||.+++..+.| +|.--. .+..... . .+++|+.|++|.||.....+..
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrF-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRF-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred ccCCcceeEEEecCCceeeeee-ecCCCceEEEEe-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 234777776555544444 379999999999 773110 0111111 1 5777888999999997555443
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRR 1153 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~Iri 1153 (1249)
-+..... ...|..++|+||| .|++++.||+|.+
T Consensus 318 ~vi~~lf----------------------------------------------~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 318 FVIHNLF----------------------------------------------NKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred hhhhhhh----------------------------------------------cCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 3332111 1178999999999 8999999999999
Q ss_pred EeCCCCCc
Q 000861 1154 WDHCSPGR 1161 (1249)
Q Consensus 1154 WDl~~~~~ 1161 (1249)
..++..+.
T Consensus 352 i~Fee~El 359 (942)
T KOG0973|consen 352 IHFEEKEL 359 (942)
T ss_pred EEcchHHh
Confidence 99876543
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=3.8e-21 Score=221.95 Aligned_cols=256 Identities=16% Similarity=0.240 Sum_probs=212.0
Q ss_pred ccccccCCCCCccCCCCcE---EEEeccccCceeE-EEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC
Q 000861 809 SFVRTSSIPDSGWRPRGIL---VAHLQEHCSAVNE-IAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG 883 (1249)
Q Consensus 809 ~~~~s~~~~~~~W~~~G~l---v~~L~~H~~~V~~-la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~ 883 (1249)
+.+++.+.+.++|.+.|+. ...+.+|.+.|.+ +++-+ ++-.+++|+.|+++.+|.....+ +..++.+|.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~------P~~~LkgH~ 101 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE------PLYTLKGHK 101 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC------chhhhhccc
Confidence 3444446778999975542 2457789998888 88875 45579999999999999999887 577899999
Q ss_pred CceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC
Q 000861 884 SRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN 963 (1249)
Q Consensus 884 ~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d 963 (1249)
..|+|+....++. +++||.|.++++|... +....+.+|...|+++. +-|+ + .+++|+.|
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~~~---------------~l~~~l~gH~asVWAv~-~l~e---~-~~vTgsaD 160 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWRIG---------------ELVYSLQGHTASVWAVA-SLPE---N-TYVTGSAD 160 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEecch---------------hhhcccCCcchheeeee-ecCC---C-cEEeccCc
Confidence 9999999888776 9999999999999987 12344788999999998 5555 2 89999999
Q ss_pred CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 964 CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 964 g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
.+|++|.- ++.+.++ .+|.+.|+.+++-+++ .+++++.||.|++||+ ++.++... ++|..-|+++.. .+++.
T Consensus 161 KtIklWk~--~~~l~tf--~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~-~~~~~ 232 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTF--SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISM-ALSDG 232 (745)
T ss_pred ceeeeccC--Cchhhhh--ccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-eccceEEEEEEe-cCCCC
Confidence 99999975 6777777 4599999999998876 5789999999999999 78888775 479999999996 45554
Q ss_pred CcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCC
Q 000861 1044 AAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNE 1123 (1249)
Q Consensus 1044 ~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~ 1123 (1249)
.++++++|+++++|+.. .|.+.+.....
T Consensus 233 ---------~Ivs~gEDrtlriW~~~--e~~q~I~lPtt----------------------------------------- 260 (745)
T KOG0301|consen 233 ---------LIVSTGEDRTLRIWKKD--ECVQVITLPTT----------------------------------------- 260 (745)
T ss_pred ---------eEEEecCCceEEEeecC--ceEEEEecCcc-----------------------------------------
Confidence 79999999999999975 88888773111
Q ss_pred CCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCC
Q 000861 1124 PPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1124 ~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~ 1157 (1249)
.|+++.+-++|-+++|++||.||+|...
T Consensus 261 ------siWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 261 ------SIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ------ceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 7888988899999999999999999876
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=8.7e-21 Score=210.96 Aligned_cols=276 Identities=15% Similarity=0.222 Sum_probs=210.2
Q ss_pred EeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCcccc----ccceeeEeeccCCceEEEEEecC-CCEEEEEeC
Q 000861 830 HLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDI----SFRSRLTYHLEGSRALCTMMLRH-SAQVVVGAC 903 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~----~~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~ 903 (1249)
..-.|.+.|+.+.+-|... .+||++..+.|.|||..+..... .+++..++.+|...-.+++|++. .-.+++|+.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 3445999999999999765 67778899999999987654211 45677789999987888999984 358899999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecC
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
|++|++||+...+.. +. .......+.+|+..|..++ |++.. ...+.+++.|+.+.|||+|++.........
T Consensus 199 d~~i~lwdi~~~~~~-~~-----~~~p~~~~~~h~~~VeDV~-~h~~h--~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 199 DHTICLWDINAESKE-DK-----VVDPKTIFSGHEDVVEDVA-WHPLH--EDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred CCcEEEEeccccccC-Cc-----cccceEEeecCCcceehhh-ccccc--hhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 999999999832211 11 1224566788999999998 99875 459999999999999999964222233346
Q ss_pred CCCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC
Q 000861 984 PEEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN 1061 (1249)
Q Consensus 984 ~h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg 1061 (1249)
+|.+.|.|++|+| ++..||+|+.|++|++||+|.. .++.++. +|...|.++.| +|... ..+++++.|+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~W-SPh~e--------tvLASSg~D~ 339 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEW-SPHNE--------TVLASSGTDR 339 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEe-CCCCC--------ceeEecccCC
Confidence 7999999999999 5578899999999999999964 4566654 69999999999 99876 5788888899
Q ss_pred eEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-
Q 000861 1062 EVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG- 1140 (1249)
Q Consensus 1062 ~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg- 1140 (1249)
.+.|||+..-...+.-. .. ... | ...+....+|...|..+.|+|..
T Consensus 340 rl~vWDls~ig~eq~~e--da--~dg----------p-------------------pEllF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPE--DA--EDG----------P-------------------PELLFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred cEEEEeccccccccChh--hh--ccC----------C-------------------cceeEEecCcccccccccCCCCCC
Confidence 99999997532211100 00 000 0 01112235777899999999998
Q ss_pred -eEEEEeCCCcEEEEeCC
Q 000861 1141 -DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1141 -~L~tgs~Dg~IriWDl~ 1157 (1249)
.|++.+.|+.+.||+..
T Consensus 387 W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEEEecCCceEEEeecc
Confidence 89999999999999986
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-21 Score=213.80 Aligned_cols=277 Identities=14% Similarity=0.140 Sum_probs=215.4
Q ss_pred CCCCCCCCCCccccccCCCCCccCCC-CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRPR-GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~~-G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.|+|..+.-+....+....+++.. -..+.++.--++.|.++.|..||+++|.|...|.|+|+|..+.. ...
T Consensus 31 sl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~------iLR 104 (487)
T KOG0310|consen 31 SLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV------ILR 104 (487)
T ss_pred eEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH------HHH
Confidence 45566655554443323445677743 33445566677899999999999999999999999999955522 244
Q ss_pred EeeccCCceEEEEEecC-CCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 878 TYHLEGSRALCTMMLRH-SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.+.+|..+|..+.|+|. +..+++|++|+.+++||+. +.. ....+.+|++.|.|.. |+|.+ +.+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s------~a~-------v~~~l~~htDYVR~g~-~~~~~--~hi 168 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS------TAY-------VQAELSGHTDYVRCGD-ISPAN--DHI 168 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC------CcE-------EEEEecCCcceeEeec-cccCC--CeE
Confidence 77889999999999995 4577789999999999998 111 2456788999999999 88875 559
Q ss_pred EEEEECCCeEEEEEcCCCc-cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 957 FMYSTQNCGIHLWDTRSNS-NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~-~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
+++|+.||.|++||+|+.. .+.++ .|..+|.++++-|.|..+++++. ..+++||+-+|...-.....|...|+|+
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCL 244 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEE
Confidence 9999999999999999874 33333 47889999999999999998764 4899999986655444344488899999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQK 1115 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~ 1115 (1249)
++ ..++. .|++++-|+.+++||+.+.+.+..+...
T Consensus 245 ~l-~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~~~----------------------------------- 279 (487)
T KOG0310|consen 245 RL-ASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWKYP----------------------------------- 279 (487)
T ss_pred Ee-ecCCc---------eEeecccccceEEEEccceEEEEeeecc-----------------------------------
Confidence 99 66666 8999999999999998777665555411
Q ss_pred ccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCC
Q 000861 1116 YRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1116 ~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~ 1159 (1249)
.+|.+++.+||+ .++.|..||.+.+=+....
T Consensus 280 -------------~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 280 -------------GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred -------------cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 178999999999 9999999999887755433
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=4.5e-21 Score=212.82 Aligned_cols=284 Identities=15% Similarity=0.210 Sum_probs=223.8
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEc
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv 912 (1249)
.|..-|.++.+|...+.+.||+. |.|||||+........ -+.+-.......|.++..+|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-vsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-VSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-cccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 48888999999999999999876 8999999986542111 111122224567999999999999999999999999999
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
.... ..+ -..+....-.+..++ .+|| .++.+++..||.|.|||++....+..+ .+|.+.+.|+
T Consensus 495 AapT---pri--------kaeltssapaCyALa-~spD---akvcFsccsdGnI~vwDLhnq~~Vrqf--qGhtDGascI 557 (705)
T KOG0639|consen 495 AAPT---PRI--------KAELTSSAPACYALA-ISPD---AKVCFSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCI 557 (705)
T ss_pred cCCC---cch--------hhhcCCcchhhhhhh-cCCc---cceeeeeccCCcEEEEEcccceeeecc--cCCCCCceeE
Confidence 8211 111 011222223466677 8898 789999999999999999999888888 5699999999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
.++++|..|.+|+-|.+|+.||+|.++.+.... ....|.++.+ .|.+. |+++|-.++.+.|......+
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~-cP~~d---------WlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGY-CPTGD---------WLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheeccc-CCCcc---------ceeeecccCcEEEEecCCcc
Confidence 999999999999999999999999998887643 4568999999 99998 99999999988887765332
Q ss_pred eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcE
Q 000861 1073 CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKI 1151 (1249)
Q Consensus 1073 ~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~I 1151 (1249)
. ..+. -|...|.++.|.+.| ++++.|.|+.+
T Consensus 626 k-yqlh-----------------------------------------------lheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 626 K-YQLH-----------------------------------------------LHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred c-eeec-----------------------------------------------ccccEEEEEEecccCceeeecCchhhh
Confidence 2 1121 233389999999999 99999999999
Q ss_pred EEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeec
Q 000861 1152 RRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKL 1231 (1249)
Q Consensus 1152 riWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~ 1231 (1249)
-.|....+..++... ....|+++. ++.
T Consensus 658 nawrtPyGasiFqsk----------------------------------------------------E~SsVlsCD-IS~ 684 (705)
T KOG0639|consen 658 NAWRTPYGASIFQSK----------------------------------------------------ESSSVLSCD-ISF 684 (705)
T ss_pred hhccCccccceeecc----------------------------------------------------ccCcceeee-ecc
Confidence 999998776654432 356799999 899
Q ss_pred CCCEEEEEeCCCeEEEc
Q 000861 1232 NQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1232 dg~~LaSgs~DG~IkVW 1248 (1249)
|.+++||||.|....||
T Consensus 685 ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 685 DDKYIVTGSGDKKATVY 701 (705)
T ss_pred CceEEEecCCCcceEEE
Confidence 99999999999877666
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=4.1e-20 Score=217.18 Aligned_cols=342 Identities=15% Similarity=0.197 Sum_probs=241.8
Q ss_pred ccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEE
Q 000861 813 TSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMM 891 (1249)
Q Consensus 813 s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~f 891 (1249)
+..+...+|+ .+|+++++++++...|+++.=+|-=..+|.|..+|+|.|+++...+. ..+++...++|++++|
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki------l~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI------LMSFKQDWGRVTSLSF 252 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE------EEEEEccccceeEEEe
Confidence 3356778999 78999999999999999999999888999999999999999999874 4455555589999999
Q ss_pred ecCCCE-EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEE
Q 000861 892 LRHSAQ-VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWD 970 (1249)
Q Consensus 892 spdg~~-Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwD 970 (1249)
..||+. +++|+..|.+.+||++ ++- ........|.+.+.... |.+. ...+++++.|+.+++|=
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe------~kk------l~~v~~nah~~sv~~~~-fl~~---epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLE------KKK------LINVTRNAHYGSVTGAT-FLPG---EPVLVTAGADNSLKVWV 316 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcC------CCe------eeeeeeccccCCcccce-ecCC---CceEeeccCCCceeEEE
Confidence 999874 5667778999999999 210 01223346888888887 8887 67999999999888775
Q ss_pred cCCCccce-ee-ecCCCCCceEEEEEc-CCCCEEEEEecCCcEEEEeCCCC-------C--------c------------
Q 000861 971 TRSNSNTW-TL-KAIPEEGYVSSLVTG-PCGNWFVSGSSRGVLTLWDLRFL-------V--------P------------ 1020 (1249)
Q Consensus 971 lrt~~~~~-~l-~~~~h~~~I~sl~~s-pdg~~L~sgs~dG~I~lWDlr~~-------~--------~------------ 1020 (1249)
..++.-.. .+ ...+|..+..|+.|. .+|..+.+++.|++++.+++... + .
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 44433211 11 125788888999887 57788888888888777776320 0 0
Q ss_pred ---------------------------ccccc----------cCC------CCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 1021 ---------------------------VNSWQ----------YSQ------VCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 1021 ---------------------------l~s~~----------~~~------~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
..+|. ..+ ...+++++. ++.|+ +.+.|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v-s~CGN---------F~~IG 466 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV-SFCGN---------FVFIG 466 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE-eccCc---------eEEEe
Confidence 00110 011 134566666 77776 88999
Q ss_pred ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec
Q 000861 1058 AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL 1137 (1249)
Q Consensus 1058 s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 1137 (1249)
...|.|.+|++.+|-....|-. .+.|...|++++..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~--------------------------------------------~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGD--------------------------------------------SPAHKGEVTGLAVD 502 (910)
T ss_pred ccCCeEEEEEcccCeeeccccc--------------------------------------------CccccCceeEEEec
Confidence 9999999999999876555531 12344588999987
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeecc--------CCceEEeeccccCCccchhhHHHHH
Q 000861 1138 PGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRS--------SSGVQVVQERKRQPLTSKLTAKAVL 1208 (1249)
Q Consensus 1138 pdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~--------~~~v~~~~e~~~~~~~~~~~~~~~~ 1208 (1249)
.-+ .+++++.||.+.+||.........+.-.. .-....|+... -..+.+... .+.+
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~---------~t~k--- 567 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS---SITGIVYHRVSDLLAIALDDFSIRVVDV---------VTRK--- 567 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCC---CcceeeeeehhhhhhhhcCceeEEEEEc---------hhhh---
Confidence 666 89999999999999998876444432111 00011111100 001111111 0011
Q ss_pred hhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1209 AAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1209 ~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
....+.||.+.|++++ |||||++|+|++.|++|++||
T Consensus 568 ---vvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 568 ---VVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred ---hhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEe
Confidence 1224679999999999 999999999999999999998
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=4.3e-21 Score=214.21 Aligned_cols=300 Identities=17% Similarity=0.217 Sum_probs=220.0
Q ss_pred CCCccccccccccCCCCCCCCCCCCccccccCCCCCccCCCCc-----EEEEec-cccCceeEEEEcCCCCEEEEEECCC
Q 000861 784 TSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRPRGI-----LVAHLQ-EHCSAVNEIAISHDHSFFVSASDDS 857 (1249)
Q Consensus 784 ~~~~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~~~G~-----lv~~L~-~H~~~V~~la~spdg~~laTgs~Dg 857 (1249)
|.-.++++..-+. +..+.|.|...++++.|-..+.|+..|- --+.|. .....|++++|++.|..|+..+...
T Consensus 159 hEi~l~hgtk~Vs--al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVS--ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEE--EeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 3445555555554 6778899999999998999999996652 122232 2456899999999999888888888
Q ss_pred cEEEEECCCCccccc------cceeeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccc
Q 000861 858 TVKVWDSRKLEKDIS------FRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISD 930 (1249)
Q Consensus 858 tVkIWD~~~~~~~~~------~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~ 930 (1249)
..+|+|-...+.... ++....-+||...++|.+|+|.. ..|++++.||++++|+++ ..+..-+ .
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~-~~k~q~q--------V 307 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN-NTKSQLQ--------V 307 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC-Cchhhee--------E
Confidence 999999876543221 12233457899999999999954 688999999999999998 2211111 1
Q ss_pred eeee--cCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeee-cCCCCC--ceEEEEEcCCCCEEEEEe
Q 000861 931 IKKK--DTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLK-AIPEEG--YVSSLVTGPCGNWFVSGS 1005 (1249)
Q Consensus 931 i~~l--~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~-~~~h~~--~I~sl~~spdg~~L~sgs 1005 (1249)
++.. .+..-.++.|. |+++ ++.+++|..||.|.+||.+....-..+. ...|.. .|+|+.|+++|++|++-+
T Consensus 308 ik~k~~~g~Rv~~tsC~-~nrd---g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCA-WNRD---GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred EeeccCCCcccCceeee-cCCC---cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 2221 12334577777 9999 7899999999999999987654322221 134555 899999999999999999
Q ss_pred cCCcEEEEeCC-CCCccccccc-CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC------CCeEEEEECCCCceeEEE
Q 000861 1006 SRGVLTLWDLR-FLVPVNSWQY-SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG------CNEVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1006 ~dG~I~lWDlr-~~~~l~s~~~-~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~------Dg~I~vWDl~tg~~~~~l 1077 (1249)
.|+++++||+| +.+++..+.. ...-+-+.++| +|+.+ +|++|+. .|.+.+||..+...++.+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~k---------li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDK---------LILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCcccc-CCCce---------EEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 99999999998 4667776543 23335677889 99988 7888764 367999998887776665
Q ss_pred ecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEe
Q 000861 1078 RTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWD 1155 (1249)
Q Consensus 1078 ~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWD 1155 (1249)
.... ..|..+.|+|-= .|+.|+.||.+++|=
T Consensus 454 ~i~~-----------------------------------------------aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DIST-----------------------------------------------ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCC-----------------------------------------------ceEEEEeecchhhheeeecCCCceEEEE
Confidence 4211 167888999876 888889999998863
No 110
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=194.98 Aligned_cols=242 Identities=17% Similarity=0.229 Sum_probs=199.6
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+.+|...|.+++|..+|..+++|+.|+++.+|+++. . .. ..-....+|.+.|-.++ |+|..++ .+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~-~----r~------~~~~~~~gh~~svdql~-w~~~~~d--~~ 80 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER-D----RF------RKELVYRGHTDSVDQLC-WDPKHPD--LF 80 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecc-h----hh------hhhhcccCCCcchhhhe-eCCCCCc--ce
Confidence 4667888999999999999999999999999999982 1 11 01123456888899998 8777644 99
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
++++.|.+|++||.|.+++...... .+.-.-++|+|+|.++++|..|..|...|.|+.+.....+ ....+..++|
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w 155 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIET---KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISW 155 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeee
Confidence 9999999999999999999888865 3444557999999999999999999999999998888765 4456788899
Q ss_pred EcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccc
Q 000861 1038 FVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR 1117 (1249)
Q Consensus 1038 ~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~ 1117 (1249)
+-++. +++...+.|+|.|......+.++.+..|.
T Consensus 156 -~~~nd---------~Fflt~GlG~v~ILsypsLkpv~si~AH~------------------------------------ 189 (313)
T KOG1407|consen 156 -NNSND---------LFFLTNGLGCVEILSYPSLKPVQSIKAHP------------------------------------ 189 (313)
T ss_pred -cCCCC---------EEEEecCCceEEEEeccccccccccccCC------------------------------------
Confidence 75555 77788888999999988777666665432
Q ss_pred ccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccC
Q 000861 1118 VDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQ 1196 (1249)
Q Consensus 1118 ~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~ 1196 (1249)
....|+.|+|+| ++++|+.|-.+.+||+...-+.+++.
T Consensus 190 -----------snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is------------------------------ 228 (313)
T KOG1407|consen 190 -----------SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS------------------------------ 228 (313)
T ss_pred -----------cceEEEEECCCCceEeeccccceeeccChhHhhhheeec------------------------------
Confidence 377899999999 99999999999999998877766664
Q ss_pred CccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEE
Q 000861 1197 PLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
.|.-+|..+. |+.+|+||||||.|-.|-|
T Consensus 229 ---------------------RldwpVRTlS-FS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 229 ---------------------RLDWPVRTLS-FSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ---------------------cccCceEEEE-eccCcceeeccCccceEEe
Confidence 3566899999 9999999999999988754
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9e-20 Score=193.78 Aligned_cols=253 Identities=18% Similarity=0.234 Sum_probs=191.7
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccc
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDH 914 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~ 914 (1249)
.+.|.++.|+|.+..|+.+|.||++++||+...+. + ..-.|..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------~-~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln- 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------K-LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN- 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------h-hheecCCceeeeeccCC-ceEEEeccCceEEEEEec-
Confidence 57899999999999999999999999999988752 2 22347788999999874 578899999999999998
Q ss_pred cccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEE
Q 000861 915 ISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT 994 (1249)
Q Consensus 915 ~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~ 994 (1249)
+ ++ ...+..|...+.|+. +.+. ...+++|+.|++|++||.|.......+.. ...|.++..
T Consensus 84 ~----~~---------~~~igth~~~i~ci~-~~~~---~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v 143 (323)
T KOG1036|consen 84 T----GN---------EDQIGTHDEGIRCIE-YSYE---VGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDV 143 (323)
T ss_pred C----Cc---------ceeeccCCCceEEEE-eecc---CCeEEEcccCccEEEEecccccccccccc---CceEEEEec
Confidence 2 21 233455889999998 7766 45899999999999999998666555543 347777665
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCCcccc-cccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC--
Q 000861 995 GPCGNWFVSGSSRGVLTLWDLRFLVPVNS-WQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG-- 1071 (1249)
Q Consensus 995 spdg~~L~sgs~dG~I~lWDlr~~~~l~s-~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg-- 1071 (1249)
.++.|++|+.+..+.+||+|....... ....-.-.++++++ .|++. -.++++-||.|.+=.++..
T Consensus 144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~e---------Gy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGE---------GYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred --cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCC---------ceEEEeecceEEEEccCCchH
Confidence 467899999999999999997654432 22234457899999 88665 4678888999888776655
Q ss_pred --ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCC
Q 000861 1072 --SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTD 1148 (1249)
Q Consensus 1072 --~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~D 1148 (1249)
+....|+.|..... + .....+|++++|+|-. .++|||.|
T Consensus 212 ~~skkyaFkCHr~~~~----------------------~----------------~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEK----------------------D----------------TEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred HhhhceeEEeeecccC----------------------C----------------ceEEEEeceeEeccccceEEecCCC
Confidence 33445554432110 0 0111279999999976 99999999
Q ss_pred CcEEEEeCCCCCccEEEe
Q 000861 1149 LKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1149 g~IriWDl~~~~~~~~l~ 1166 (1249)
|.|.+||+.+.+....+.
T Consensus 254 G~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred ceEEEccCcchhhhhhcc
Confidence 999999999887766553
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-20 Score=207.97 Aligned_cols=278 Identities=17% Similarity=0.238 Sum_probs=203.4
Q ss_pred EEECC-CcEEEEECCCCccccccceeeEeecc-CCceEEEEEecCCCEEEEE-eCCCeEEEEEccccccCCCccccccCc
Q 000861 852 SASDD-STVKVWDSRKLEKDISFRSRLTYHLE-GSRALCTMMLRHSAQVVVG-ACDGIIHMFSVDHISRGLGNVEKYSGI 928 (1249)
Q Consensus 852 Tgs~D-gtVkIWD~~~~~~~~~~~~~~t~~~h-~~~V~sl~fspdg~~Lasg-s~Dg~I~vwdv~~~~~~~g~~~~~~~~ 928 (1249)
+++.| .++.+||+.++.. ..+|.+. ...-.++... ++.+++++ .....+++|.+....
T Consensus 12 ssS~d~~~~~~~dl~TGt~------~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~------------ 72 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTS------LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKD------------ 72 (476)
T ss_pred ccCCCCcceeEEecCCCce------eEEecCcccccchhhhhh-chhheeeecccCccccccccCchh------------
Confidence 34444 4599999999985 3444443 1111122222 22455555 445679999987111
Q ss_pred cceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC
Q 000861 929 SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG 1008 (1249)
Q Consensus 929 ~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG 1008 (1249)
.......-.|.+.++. -+|+ |.+++.|+..|.|++|.+.+|..+..+ ..|...|+|+.|+.||.+|++|+.||
T Consensus 73 -~~~q~~v~Pg~v~al~-s~n~---G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 73 -QVVQYIVLPGPVHALA-SSNL---GYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred -hhhhhcccccceeeee-cCCC---ceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCc
Confidence 1112222467889998 6677 778888889999999999999999888 56999999999999999999999999
Q ss_pred cEEEEeCC---------CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1009 VLTLWDLR---------FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1009 ~I~lWDlr---------~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
.|.+|++- +-.++..|. .|.-+|+.+.. .+.|. ...+++++.|.++++||+..|..+..+..
T Consensus 146 ~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~i-g~Gg~-------~~rl~TaS~D~t~k~wdlS~g~LLlti~f 216 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQI-GSGGT-------NARLYTASEDRTIKLWDLSLGVLLLTITF 216 (476)
T ss_pred cEEEEEEEeecccccCCCccceeeec-cCcceeEEEEe-cCCCc-------cceEEEecCCceEEEEEeccceeeEEEec
Confidence 99999873 234666665 58899999998 76654 45899999999999999999987776652
Q ss_pred ccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1080 ANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1080 ~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
. ..+.+++.+|.+ .++.|+.+|.|.+.++..
T Consensus 217 p------------------------------------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 217 P------------------------------------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred C------------------------------------------------CcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 1 167899999998 999999999999998865
Q ss_pred CCccEE-EeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCccc--ceeEEEeeecCCCE
Q 000861 1159 PGRSYC-ICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRD--SILSLGSVKLNQRL 1235 (1249)
Q Consensus 1159 ~~~~~~-l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d--~I~~la~~s~dg~~ 1235 (1249)
...-.. +... .+ .. .......+.||.+ .|+|++ ++.||.+
T Consensus 249 ~~~~~~~v~~k---------~~----------~~-----------------~~t~~~~~~Gh~~~~~ITcLa-is~Dgtl 291 (476)
T KOG0646|consen 249 LSGQSAGVNQK---------GR----------HE-----------------ENTQINVLVGHENESAITCLA-ISTDGTL 291 (476)
T ss_pred CCccccccccc---------cc----------cc-----------------ccceeeeeccccCCcceeEEE-EecCccE
Confidence 431000 0000 00 00 0011224568988 999999 9999999
Q ss_pred EEEEeCCCeEEEcC
Q 000861 1236 LISSSRDGAIKVWK 1249 (1249)
Q Consensus 1236 LaSgs~DG~IkVWd 1249 (1249)
|+||+.||.|+|||
T Consensus 292 LlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWD 305 (476)
T ss_pred EEeeCCCCCEEEEe
Confidence 99999999999997
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=5.6e-20 Score=204.02 Aligned_cols=264 Identities=17% Similarity=0.220 Sum_probs=206.7
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcc-c-------cccCccceeeecCCCCcEEEEEEecC
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV-E-------KYSGISDIKKKDTKEGAIVTLVNYNT 949 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~-~-------~~~~~~~i~~l~~h~~~V~~l~~fs~ 949 (1249)
.+..|.-.|++++++|++.+.++++.||+|.-|++. ++.....+ . .+...+.-+ +.|...+.+++ .++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~-tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~a-vS~ 212 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVL-TGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLA-VSS 212 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehh-cCcccccccccchhhhhccCCCCccc--ccccceeEEEE-EcC
Confidence 455677889999999999999999999999999998 33222111 1 111111111 47888999999 999
Q ss_pred CCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCC
Q 000861 950 DNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQV 1029 (1249)
Q Consensus 950 d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~ 1029 (1249)
| ++++++|+.|..|.|||.++++.+..+ .+|.+.|.+++|-...+.+++++.|+.|++|++.....+.++ .+|.
T Consensus 213 D---gkylatgg~d~~v~Iw~~~t~ehv~~~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl-yGHq 286 (479)
T KOG0299|consen 213 D---GKYLATGGRDRHVQIWDCDTLEHVKVF--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL-YGHQ 286 (479)
T ss_pred C---CcEEEecCCCceEEEecCcccchhhcc--cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH-hCCc
Confidence 9 889999999999999999999999887 569999999999988899999999999999999887777775 4799
Q ss_pred CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccc
Q 000861 1030 CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLR 1109 (1249)
Q Consensus 1030 ~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~ 1109 (1249)
..|..+.. ..-+. .+.+|+.|+++++|++.. .....++++
T Consensus 287 d~v~~Ida-L~reR---------~vtVGgrDrT~rlwKi~e-esqlifrg~----------------------------- 326 (479)
T KOG0299|consen 287 DGVLGIDA-LSRER---------CVTVGGRDRTVRLWKIPE-ESQLIFRGG----------------------------- 326 (479)
T ss_pred cceeeech-hcccc---------eEEeccccceeEEEeccc-cceeeeeCC-----------------------------
Confidence 99999987 55554 566677899999999953 333344422
Q ss_pred ccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEE
Q 000861 1110 RNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQV 1189 (1249)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~ 1189 (1249)
...+-|++|-.+..+++|++||.|.+|++...+.+++..... +..
T Consensus 327 ------------------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH--gv~--------------- 371 (479)
T KOG0299|consen 327 ------------------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH--GVI--------------- 371 (479)
T ss_pred ------------------CCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccc--ccc---------------
Confidence 126789999888899999999999999999888877665332 000
Q ss_pred eeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1190 VQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1190 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
++ . ..-.|...|++++ .-|...+++|||.+|+||+|.
T Consensus 372 -~~--------------------~-~~~~~~~Witsla-~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 372 -PE--------------------L-DPVNGNFWITSLA-VIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred -CC--------------------c-cccccccceeeeE-ecccCceEEecCCCCceEEEE
Confidence 00 0 0113457899999 789999999999999999994
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-20 Score=219.32 Aligned_cols=290 Identities=18% Similarity=0.251 Sum_probs=213.8
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC---CceEEEEEec-CCCEEEEEeCC
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG---SRALCTMMLR-HSAQVVVGACD 904 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~---~~V~sl~fsp-dg~~Lasgs~D 904 (1249)
..+++| .++|..+++-..++.++. ..++|+.+........ +...+.... -.+..+.|.. +.++||+++..
T Consensus 36 ~~~k~~---~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~--~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 36 CKLKAK---ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK--CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred eecccc---cceEeecCCcceeEEecc-cceeeEeeCcccCCcc--eeeecccccceeeehhhcccccchhhhheeecCC
Confidence 345444 556677788877877765 4788887765442211 111111111 1355677775 56799999999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
|.|.+||+.... ....+..+..|+..+.++. |++..+. +|++|+.||.|++||+|..+...++. +
T Consensus 110 G~i~vWdlnk~~----------rnk~l~~f~EH~Rs~~~ld-fh~tep~--iliSGSQDg~vK~~DlR~~~S~~t~~--~ 174 (839)
T KOG0269|consen 110 GVISVWDLNKSI----------RNKLLTVFNEHERSANKLD-FHSTEPN--ILISGSQDGTVKCWDLRSKKSKSTFR--S 174 (839)
T ss_pred CcEEEEecCccc----------cchhhhHhhhhccceeeee-eccCCcc--EEEecCCCceEEEEeeeccccccccc--c
Confidence 999999998211 1224556778999999999 9888654 99999999999999999988877764 3
Q ss_pred CCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCc-ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe
Q 000861 985 EEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVP-VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE 1062 (1249)
Q Consensus 985 h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~-l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~ 1062 (1249)
....|+.+.|+| .+..++++...|++.+||+|.... ...+ ..|.++|.++.| +|++. +|++||.|+.
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nw-hPnr~---------~lATGGRDK~ 243 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNW-HPNRE---------WLATGGRDKM 243 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-hcccCceEEEee-cCCCc---------eeeecCCCcc
Confidence 678899999999 568999999999999999997654 4444 469999999999 99887 9999999999
Q ss_pred EEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--
Q 000861 1063 VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-- 1140 (1249)
Q Consensus 1063 I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-- 1140 (1249)
|+|||+.+++......... ...|.++.|-|+.
T Consensus 244 vkiWd~t~~~~~~~~tInT----------------------------------------------iapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHTINT----------------------------------------------IAPVGRVKWRPARSY 277 (839)
T ss_pred EEEEeccCCCccceeEEee----------------------------------------------cceeeeeeeccCccc
Confidence 9999998654322221100 1167888999988
Q ss_pred eEEEEe--CCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCC
Q 000861 1141 DLLTGG--TDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGC 1218 (1249)
Q Consensus 1141 ~L~tgs--~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 1218 (1249)
.|++++ .|-.|++||+..+-..+. ++..
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~--------------------------------------------------t~~e 307 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYA--------------------------------------------------TFLE 307 (839)
T ss_pred hhhhhhccccceEEEEeeccccccce--------------------------------------------------eeec
Confidence 677665 588999999987654322 2336
Q ss_pred cccceeEEEeeecCCCEEEEEeCCCeEE
Q 000861 1219 HRDSILSLGSVKLNQRLLISSSRDGAIK 1246 (1249)
Q Consensus 1219 H~d~I~~la~~s~dg~~LaSgs~DG~Ik 1246 (1249)
|++.++.+++-+.+-..|.|++.||+|.
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHH
Confidence 9999999993344567889999999863
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.8e-19 Score=189.40 Aligned_cols=247 Identities=14% Similarity=0.161 Sum_probs=199.4
Q ss_pred CCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEEC--CCcEEEEECCCCccccccc
Q 000861 798 ASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASD--DSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 798 ~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~--DgtVkIWD~~~~~~~~~~~ 874 (1249)
.+++|+.+|..+.+.+.+.+..+++ .+|+.+.++..++-.|..++|......++.++. |.+|+.-++.+.+
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk------ 91 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK------ 91 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc------
Confidence 3678999999988877677889999 789999999999999999999887777777776 8899999999876
Q ss_pred eeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc
Q 000861 875 SRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
....+.||...|.+++.+|-+..+++++.|++|++||++ ..++.|.+ . ... .-+++|+|. |
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l------------~--~~~-~pi~AfDp~---G 152 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL------------N--LSG-RPIAAFDPE---G 152 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE------------e--cCC-CcceeECCC---C
Confidence 466889999999999999999999999999999999998 44333332 1 111 123349999 7
Q ss_pred cEEEEEECCCeEEEEEcCCCc--cceeeecC-CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCC-C
Q 000861 955 HMFMYSTQNCGIHLWDTRSNS--NTWTLKAI-PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQV-C 1030 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~--~~~~l~~~-~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~-~ 1030 (1249)
-++|++.....|++||+|... +-.++... +.....+.+.|+|||++++.++..+.+.+.|.-.|..+.++..... .
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 788888777799999999752 33344332 4567899999999999999999999999999989988877654222 2
Q ss_pred Ce-eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1031 PI-EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1031 ~I-~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
.+ ...+| .|+++ ++++|+.||+|.+|++++|..+..+++
T Consensus 233 ~~~~~a~f-tPds~---------Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 233 NLPLSATF-TPDSK---------FVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CcceeEEE-CCCCc---------EEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 22 34456 99998 999999999999999999998888874
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=200.66 Aligned_cols=292 Identities=14% Similarity=0.169 Sum_probs=218.1
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC-EEEEEeCCCeEEEEEccc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA-QVVVGACDGIIHMFSVDH 914 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~-~Lasgs~Dg~I~vwdv~~ 914 (1249)
+.|+++.|+|....+.+|+.||+++||.+...... ....+.....+|.+.+|.|+|+ .+++++....++.||+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle- 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE- 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh----hheeeeeccCccceeeecCCCceEEEecccceEEEEeecc-
Confidence 68999999999999999999999999998765421 2334555567899999999998 88899999999999998
Q ss_pred cccCCCccccccCccceeeecCCCCc-EEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEE
Q 000861 915 ISRGLGNVEKYSGISDIKKKDTKEGA-IVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLV 993 (1249)
Q Consensus 915 ~~~~~g~~~~~~~~~~i~~l~~h~~~-V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~ 993 (1249)
..++. .+....+++.. +.... .+++ +++|+..+..|.|++....+++.+.+++. .|.|..++
T Consensus 289 ----~ak~~------k~~~~~g~e~~~~e~Fe-VShd---~~fia~~G~~G~I~lLhakT~eli~s~Ki---eG~v~~~~ 351 (514)
T KOG2055|consen 289 ----TAKVT------KLKPPYGVEEKSMERFE-VSHD---SNFIAIAGNNGHIHLLHAKTKELITSFKI---EGVVSDFT 351 (514)
T ss_pred ----ccccc------cccCCCCcccchhheeE-ecCC---CCeEEEcccCceEEeehhhhhhhhheeee---ccEEeeEE
Confidence 23331 12223333322 22333 6788 67999999999999999999999999986 78999999
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCce
Q 000861 994 TGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 994 ~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~ 1073 (1249)
|+.+++.|++.+.+|.|.+||++...+++.|.....-.-+++|. ++++. |+++|+..|-|.|||..+..
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~-S~ng~---------ylA~GS~~GiVNIYd~~s~~- 420 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCI-SLNGS---------YLATGSDSGIVNIYDGNSCF- 420 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeee-cCCCc---------eEEeccCcceEEEeccchhh-
Confidence 99999999999999999999999999999997543333456666 78887 99999999999999976421
Q ss_pred eEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEE--EEeCCCc
Q 000861 1074 HQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLL--TGGTDLK 1150 (1249)
Q Consensus 1074 ~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~--tgs~Dg~ 1150 (1249)
..- . | .|+. .+.++ ...|+++.|++|+ .|+ +-..+..
T Consensus 421 -~s~------~----------P-kPik----------------~~dNL------tt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 421 -AST------N----------P-KPIK----------------TVDNL------TTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred -ccC------C----------C-Cchh----------------hhhhh------heeeeeeeeCcchhhhhhhhhccccc
Confidence 000 0 0 0110 01111 1279999999999 444 4456788
Q ss_pred EEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeee
Q 000861 1151 IRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVK 1230 (1249)
Q Consensus 1151 IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s 1230 (1249)
+|+-.+.+... ++.-. . ...--+.|+|++ |+
T Consensus 461 lrLVHvPS~TV---FsNfP----------------------~-----------------------~n~~vg~vtc~a-FS 491 (514)
T KOG2055|consen 461 LRLVHVPSCTV---FSNFP----------------------T-----------------------SNTKVGHVTCMA-FS 491 (514)
T ss_pred eEEEeccceee---eccCC----------------------C-----------------------CCCcccceEEEE-ec
Confidence 88888764322 22111 0 001234599999 99
Q ss_pred cCCCEEEEEeCCCeEEEcC
Q 000861 1231 LNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1231 ~dg~~LaSgs~DG~IkVWd 1249 (1249)
|.+.+|+-|..+|.+.+|+
T Consensus 492 P~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred CCCceEEeecCCCceeeEe
Confidence 9999999999999999996
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-18 Score=200.96 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=222.7
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC-CceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG-SRALCTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~-~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
..+|.++||+.+.+.+|.+-.||.|.||++...-. ....+.++. ..|-+++|++. ..|++.+.+|+|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-----~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-----LEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce-----eeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecc
Confidence 56899999999999999999999999999987532 234555544 48999999954 578888999999999998
Q ss_pred ccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEE
Q 000861 914 HISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLV 993 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~ 993 (1249)
.+ .....++...+.|++++ .+|. ++.++.|+.||.+..++...+...+...+....+.|.++.
T Consensus 99 -----~l--------k~~~~~d~~gg~IWsia-i~p~---~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 99 -----TL--------KQKYNIDSNGGAIWSIA-INPE---NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred -----cC--------ceeEEecCCCcceeEEE-eCCc---cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 12 24566777889999999 8888 6799999999988888888887776665566679999999
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCCcccccc-------cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 994 TGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ-------YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 994 ~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~-------~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
|+|++..++.|+.||.|++||...+..+.... .....-|+++.| ..++. |++|...|+|++|
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~-Lrd~t----------I~sgDS~G~V~FW 230 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF-LRDST----------IASGDSAGTVTFW 230 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE-eecCc----------EEEecCCceEEEE
Confidence 99999999999999999999999887766211 112334788888 66664 8899889999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|...|...+.+..+.+ .|.|++..+++ +++++
T Consensus 231 d~~~gTLiqS~~~h~a-----------------------------------------------dVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDA-----------------------------------------------DVLALAVADNEDRVFSA 263 (691)
T ss_pred cccCcchhhhhhhhhc-----------------------------------------------ceeEEEEcCCCCeEEEc
Confidence 9999987766654332 78999999997 99999
Q ss_pred eCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeE
Q 000861 1146 GTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILS 1225 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~ 1225 (1249)
|.|++|..+...+...-.+..+. ...|...|.+
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~-----------------------------------------------r~~h~hdvrs 296 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSR-----------------------------------------------RDLHAHDVRS 296 (691)
T ss_pred cCCCceEEEEecCCccceeeecc-----------------------------------------------ccCCccccee
Confidence 99999999988765442222111 2367788888
Q ss_pred EEeeecCCCEEEEEeCCCeEEE
Q 000861 1226 LGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1226 la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
++++ +..|++||+|+++.+
T Consensus 297 ~av~---~~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 297 MAVI---ENALISGGRDFTLAI 315 (691)
T ss_pred eeee---cceEEecceeeEEEE
Confidence 8854 338999999988765
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=1.2e-19 Score=202.01 Aligned_cols=268 Identities=16% Similarity=0.215 Sum_probs=196.5
Q ss_pred ccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEE
Q 000861 881 LEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s 959 (1249)
.|.+.|..+.+.|+. ..+++++..+.|.|||....... ... .....+-..+.+|++.-..+. |++.. .-.+++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-~~~--~~~~~Pdl~L~gH~~eg~gls-Wn~~~--~g~Lls 195 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-PKA--SGECRPDLRLKGHEKEGYGLS-WNRQQ--EGTLLS 195 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-ccc--cccCCCceEEEeecccccccc-ccccc--ceeEee
Confidence 377889999999965 56667788899999998722110 100 001223345677888777887 88875 348999
Q ss_pred EECCCeEEEEEcCCCcc-----ceeeecCCCCCceEEEEEcCC-CCEEEEEecCCcEEEEeCCC--CCcccccccCCCCC
Q 000861 960 STQNCGIHLWDTRSNSN-----TWTLKAIPEEGYVSSLVTGPC-GNWFVSGSSRGVLTLWDLRF--LVPVNSWQYSQVCP 1031 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~-----~~~l~~~~h~~~I~sl~~spd-g~~L~sgs~dG~I~lWDlr~--~~~l~s~~~~~~~~ 1031 (1249)
++.|++|++||+..... .......+|...|..++|++. ...|++++.||.+.|||+|+ .++... ..+|.++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~~ah~~~ 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-VKAHSAE 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-ccccCCc
Confidence 99999999999986433 122234679999999999994 57889999999999999995 334333 3468999
Q ss_pred eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1032 IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1032 I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
|.+++| +|-+. ..|++|+.|++|.+||+++.. ++..+
T Consensus 275 vn~~~f-np~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~--------------------------------- 312 (422)
T KOG0264|consen 275 VNCVAF-NPFNE--------FILATGSADKTVALWDLRNLNKPLHTF--------------------------------- 312 (422)
T ss_pred eeEEEe-CCCCC--------ceEEeccCCCcEEEeechhcccCceec---------------------------------
Confidence 999999 88765 578888899999999998753 22222
Q ss_pred cccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceE
Q 000861 1111 NVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQ 1188 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~ 1188 (1249)
.+|...|.++.|+|+. .|+++|.|+++.+||+..-...+. +-........+.
T Consensus 313 --------------e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~------------~eda~dgppEll 366 (422)
T KOG0264|consen 313 --------------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS------------PEDAEDGPPELL 366 (422)
T ss_pred --------------cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC------------hhhhccCCccee
Confidence 3444589999999988 999999999999999976433211 011111222333
Q ss_pred EeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCC-EEEEEeCCCeEEEcC
Q 000861 1189 VVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQR-LLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1189 ~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~-~LaSgs~DG~IkVWd 1249 (1249)
|.. .||.+.|.++. |+|+.. .++|++.|+.+.||+
T Consensus 367 F~H-------------------------gGH~~kV~Dfs-Wnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 367 FIH-------------------------GGHTAKVSDFS-WNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EEe-------------------------cCccccccccc-CCCCCCeEEEEecCCceEEEee
Confidence 333 38999999999 999865 478899999999996
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.5e-19 Score=189.36 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=182.3
Q ss_pred CCCCCCC-CCCccccccCCCCCccC--CCCcEEE-EeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 000861 799 SSPADLT-GLPSFVRTSSIPDSGWR--PRGILVA-HLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 799 ~~~~s~~-G~~~~~~s~~~~~~~W~--~~G~lv~-~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
.++|+|. ...+..++.|.+.++|+ ..|.++- ....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------ 105 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------ 105 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------
Confidence 5678883 33444666789999999 3466554 455799999999999999999999999999999999986
Q ss_pred eeeEeeccCCceEEEEEecCCC--EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCC
Q 000861 875 SRLTYHLEGSRALCTMMLRHSA--QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNC 952 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg~--~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~ 952 (1249)
...+..|.++|.++.|.+... +|++||.|.+|+.||.+ .. .++.++.. .+.+.++. .-
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~------------~pv~t~~L-PeRvYa~D-v~---- 165 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SS------------NPVATLQL-PERVYAAD-VL---- 165 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccC-CC------------Ceeeeeec-cceeeehh-cc----
Confidence 457888999999999998665 89999999999999998 21 12333332 23455554 22
Q ss_pred CccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCccccccc-CCC--
Q 000861 953 ASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQY-SQV-- 1029 (1249)
Q Consensus 953 ~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~-~~~-- 1029 (1249)
..++++++.+..|.+|+++.+.........+-.-.++|++..+++...+.|+-.|.+.+..+..+.+...+.. .|.
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST 244 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC
Confidence 2389999999999999998775543332233456789999999988889999999999999887644333221 122
Q ss_pred -------CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 1030 -------CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1030 -------~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
-.|++++| +|... .++++++||++.+||-.....+.
T Consensus 245 ~~~~~~VYaVNsi~F-hP~hg---------tlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAF-HPVHG---------TLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred CCCCCceEEecceEe-ecccc---------eEEEecCCceEEEecchhhhhhh
Confidence 25778999 99776 89999999999999976554433
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=207.17 Aligned_cols=244 Identities=16% Similarity=0.201 Sum_probs=197.9
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCC-ccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKL-EKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~-~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
.|+..-+.|+|.|+|.+++|++.||.|++|+.... +. ..++..++..|.+++- ++.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------CchhhccCceeEEEee--cccceEEeeccceEEEee
Confidence 68888999999999999999999999999998876 32 1233335666766664 456999999999999999
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEE
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSS 991 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~s 991 (1249)
+. .....+-+.+ ..-++.+++ |+.+ |.+++.|+.|-.|++.++.+......+ .+|.++|.+
T Consensus 83 fp-s~~~~~iL~R------------ftlp~r~~~-v~g~---g~~iaagsdD~~vK~~~~~D~s~~~~l--rgh~apVl~ 143 (933)
T KOG1274|consen 83 FP-SGEEDTILAR------------FTLPIRDLA-VSGS---GKMIAAGSDDTAVKLLNLDDSSQEKVL--RGHDAPVLQ 143 (933)
T ss_pred CC-CCCccceeee------------eeccceEEE-EecC---CcEEEeecCceeEEEEeccccchheee--cccCCceee
Confidence 98 2221111111 234577777 8888 789999999999999999988887777 569999999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC-------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEE
Q 000861 992 LVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS-------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVS 1064 (1249)
Q Consensus 992 l~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~-------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~ 1064 (1249)
+.|+|++++|++.+-||.|++||+.++.+.+++..- ....+..++| +|++. .+++.+.|++|+
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW-~Pk~g---------~la~~~~d~~Vk 213 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW-HPKGG---------TLAVPPVDNTVK 213 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee-cCCCC---------eEEeeccCCeEE
Confidence 999999999999999999999999999888776531 1335678899 99976 688889999999
Q ss_pred EEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEE
Q 000861 1065 LWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLL 1143 (1249)
Q Consensus 1065 vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~ 1143 (1249)
+|+..++.....++.-.. ...+.++.|+|.| ||+
T Consensus 214 vy~r~~we~~f~Lr~~~~---------------------------------------------ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKLS---------------------------------------------SSKFSDLQWSPNGKYIA 248 (933)
T ss_pred EEccCCceeheeeccccc---------------------------------------------ccceEEEEEcCCCcEEe
Confidence 999998887777763111 1158899999999 999
Q ss_pred EEeCCCcEEEEeCCC
Q 000861 1144 TGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1144 tgs~Dg~IriWDl~~ 1158 (1249)
+++.||.|.+||+.+
T Consensus 249 As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT 263 (933)
T ss_pred eeccCCcEEEEeccc
Confidence 999999999999986
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=2.1e-19 Score=188.58 Aligned_cols=313 Identities=17% Similarity=0.234 Sum_probs=218.7
Q ss_pred eccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccccc--cCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 880 HLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHIS--RGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 880 ~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~--~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
..|.+.|.++...+ .|+++++|+.||.|.+||+.... +..+-+.+..-......-++|.-.|.++. |-|-. ..+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~-WyP~D--tGm 116 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI-WYPID--TGM 116 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE-Eeeec--Cce
Confidence 45778899999988 78999999999999999998433 11111111000001122345777898988 55542 458
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCC---CCEEEEEecCCcEEEEeCCCCCcccccccCCCCCee
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC---GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE 1033 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd---g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~ 1033 (1249)
+.+++.|.++++||..|-+....++. .+.|++-+++|- ..++++|+.+-.|++.|+..|..-.++. +|...|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceE
Confidence 99999999999999999998888876 678888899883 4678889999999999999999988876 7999999
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC-ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccc
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG-SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNV 1112 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg-~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~ 1112 (1249)
++.| +|... ..|++|+.||.|++||++.. .|..++..+..... |+
T Consensus 193 aV~W-sp~~e--------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~------------p~------------- 238 (397)
T KOG4283|consen 193 AVEW-SPSSE--------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP------------PI------------- 238 (397)
T ss_pred EEEe-ccCce--------eEEEecCCCceEEEEEeecccceeEEeecccCccC------------cc-------------
Confidence 9999 88876 45778888999999999865 67666664432110 11
Q ss_pred cccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeec--cCCceEE
Q 000861 1113 NQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETR--SSSGVQV 1189 (1249)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~--~~~~v~~ 1189 (1249)
+.....|...|..++|+.|| +++++|.|.++++|+..+++....-.|+..........+..+ ....+.+
T Consensus 239 --------~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~ 310 (397)
T KOG4283|consen 239 --------LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVL 310 (397)
T ss_pred --------ccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEE
Confidence 11234566789999999999 999999999999999999887655444432111111111111 1122333
Q ss_pred eeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1190 VQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1190 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
.|.....+...- ........+.+|-..|.|.+ +.|+-+...+|+.||.|..|
T Consensus 311 ~p~~~~lall~~------~sgs~ir~l~~h~k~i~c~~-~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 311 FPNDGSLALLNL------LEGSFVRRLSTHLKRINCAA-YRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred EecCCeEEEEEc------cCceEEEeeecccceeeEEe-ecCchhhhhccccCCccccc
Confidence 333221111000 00011224668988888887 89999999999999999988
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.5e-18 Score=195.40 Aligned_cols=239 Identities=14% Similarity=0.212 Sum_probs=186.1
Q ss_pred CCCCCCCCccccccCCCCCccCCCC--cEEEEecccc-CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 801 PADLTGLPSFVRTSSIPDSGWRPRG--ILVAHLQEHC-SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 801 ~~s~~G~~~~~~s~~~~~~~W~~~G--~lv~~L~~H~-~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
.|+.....++.+..+....+|++.. -+...++||. +.|.+++|++. ..|.+.+.+|.|.-||+.+++ ...
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk------~~~ 104 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLK------QKY 104 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCc------eeE
Confidence 3333333344444467889999654 3556677776 58999999954 467788889999999999987 355
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+...++.|++++.+|.+..++.|+.||.+..+++. .+.+ ..-+.+.-.++.+.++. |+++ +..+
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-----p~~I------~~~r~l~rq~sRvLsls-w~~~---~~~i 169 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-----PDKI------TYKRSLMRQKSRVLSLS-WNPT---GTKI 169 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecC-----CceE------EEEeecccccceEEEEE-ecCC---ccEE
Confidence 677788899999999999999999999977666665 2332 12233444578999999 9999 7789
Q ss_pred EEEECCCeEEEEEcCCCccceeee-----cC-CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCC
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLK-----AI-PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCP 1031 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~-----~~-~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~ 1031 (1249)
+.|+.||.|++||..++....... .. ....-|.++.+-.++ .+++|.+.|+|.+||..++..++++.. |.+.
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~-h~ad 247 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC-HDAD 247 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh-hhcc
Confidence 999999999999999988765221 11 133457888887655 799999999999999999999999875 8899
Q ss_pred eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCce
Q 000861 1032 IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 1032 I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~ 1073 (1249)
|.+++. .+++. .+++++.|+.|..|...++..
T Consensus 248 Vl~Lav-~~~~d---------~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 248 VLALAV-ADNED---------RVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred eeEEEE-cCCCC---------eEEEccCCCceEEEEecCCcc
Confidence 999999 88877 899999999998888776543
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3e-19 Score=183.57 Aligned_cols=262 Identities=12% Similarity=0.132 Sum_probs=202.0
Q ss_pred eccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec--CCCEEEEEeCCCeEE
Q 000861 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR--HSAQVVVGACDGIIH 908 (1249)
Q Consensus 831 L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp--dg~~Lasgs~Dg~I~ 908 (1249)
-.+|.+.|..+...-.|++|||||.|++|||+..+.... .....++.+|.++|+.++|.. .|..||+++.||.|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 357999999999999999999999999999999987653 125678999999999999987 899999999999999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC-ccceeeecCCCCC
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN-SNTWTLKAIPEEG 987 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~-~~~~~l~~~~h~~ 987 (1249)
||.-. . |. + ........|...|++++ |.|.. .|-.|++++.||.|.+.+.+.. .-........|.-
T Consensus 84 iWke~-~----g~---w---~k~~e~~~h~~SVNsV~-waphe-ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 84 IWKEE-N----GR---W---TKAYEHAAHSASVNSVA-WAPHE-YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EEecC-C----Cc---h---hhhhhhhhhcccceeec-ccccc-cceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99987 1 21 1 22445667999999999 99984 4778999999999999998865 2222222356888
Q ss_pred ceEEEEEcCC---C-----------CEEEEEecCCcEEEEeCCCCCcccc-cccCCCCCeeEEEEEcCCCCCcccCCCCC
Q 000861 988 YVSSLVTGPC---G-----------NWFVSGSSRGVLTLWDLRFLVPVNS-WQYSQVCPIEKMCLFVPPPNAAVSTTARP 1052 (1249)
Q Consensus 988 ~I~sl~~spd---g-----------~~L~sgs~dG~I~lWDlr~~~~l~s-~~~~~~~~I~~l~~~sp~g~~~~~~~~~~ 1052 (1249)
.|++++|.|. | +.|++|+.|..|++|+...+.-+.. ...+|...|+.++| .|.-. -...
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw-aP~~g-----l~~s 224 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW-APSVG-----LPKS 224 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh-ccccC-----CCce
Confidence 9999999985 4 5699999999999999987643222 13469999999999 77643 2345
Q ss_pred EEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeE
Q 000861 1053 LIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIR 1132 (1249)
Q Consensus 1053 ~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~ 1132 (1249)
+|++|+.||++.||-.+.... ..+ ......-...+.
T Consensus 225 ~iAS~SqDg~viIwt~~~e~e--~wk------------------------------------------~tll~~f~~~~w 260 (299)
T KOG1332|consen 225 TIASCSQDGTVIIWTKDEEYE--PWK------------------------------------------KTLLEEFPDVVW 260 (299)
T ss_pred eeEEecCCCcEEEEEecCccC--ccc------------------------------------------ccccccCCcceE
Confidence 899999999999997652110 000 000011123789
Q ss_pred EEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1133 SLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1133 sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
.+.|+..| .|+.++.|+.|.+|.-..
T Consensus 261 ~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 261 RVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999999 899999999999998653
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.3e-18 Score=181.29 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=206.9
Q ss_pred ccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec--CCCEEEEEeCCCeEEE
Q 000861 832 QEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR--HSAQVVVGACDGIIHM 909 (1249)
Q Consensus 832 ~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp--dg~~Lasgs~Dg~I~v 909 (1249)
.+|.+-|+++.|.+.|+.+||||.|++|+|||..+.. .++.+....+.|.+.|..+.|.+ -|+.+|+++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s--~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS--GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC--CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 3799999999999999999999999999999985543 34556667889999999999976 5899999999999999
Q ss_pred EEccccc-cCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc--ee----ee-
Q 000861 910 FSVDHIS-RGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT--WT----LK- 981 (1249)
Q Consensus 910 wdv~~~~-~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~--~~----l~- 981 (1249)
|.-.... +..| .......++....+.|+++. |.|..- |-.+++++.||.++||+.-..-.+ |+ ++
T Consensus 88 WEE~~~~~~~~~-----~~Wv~~ttl~DsrssV~DV~-FaP~hl-GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 88 WEEQEKSEEAHG-----RRWVRRTTLVDSRSSVTDVK-FAPKHL-GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred eeeccccccccc-----ceeEEEEEeecCCcceeEEE-ecchhc-ceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 9864111 1111 01123445666778899999 998732 668999999999999987653221 12 11
Q ss_pred ----cCCCCCceEEEEEcCCC---CEEEEEecC-----CcEEEEeCCCCC----cccccccCCCCCeeEEEEEcCCCCCc
Q 000861 982 ----AIPEEGYVSSLVTGPCG---NWFVSGSSR-----GVLTLWDLRFLV----PVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 982 ----~~~h~~~I~sl~~spdg---~~L~sgs~d-----G~I~lWDlr~~~----~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
...+.....|+.|+|.. ..|++|+.+ +.+.||....+. .+.++. +|..+|+.++| .|+-.
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~w-APn~G-- 236 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISW-APNIG-- 236 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeee-ccccC--
Confidence 11245678899999853 678888776 578888765432 344544 68999999999 88743
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCC
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPP 1125 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~ 1125 (1249)
..-..|++++.|| |+||.+.... ...... .... | ....++.+..+....
T Consensus 237 ---r~y~~lAvA~kDg-v~I~~v~~~~-s~i~~e-e~~~-------------~------------~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 237 ---RSYHLLAVATKDG-VRIFKVKVAR-SAIEEE-EVLA-------------P------------DLMTDLPVEKVSELD 285 (361)
T ss_pred ---CceeeEEEeecCc-EEEEEEeecc-chhhhh-cccC-------------C------------CCccccceEEeeecc
Confidence 1234788999999 9999986422 111110 0000 0 001234455556667
Q ss_pred CCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEE
Q 000861 1126 PRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYC 1164 (1249)
Q Consensus 1126 ~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~ 1164 (1249)
+|...|+.+.|.-.| .|.+.|.||+||+|...-.....+
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC 325 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKC 325 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhee
Confidence 888999999999999 999999999999998765544443
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=3.5e-18 Score=190.82 Aligned_cols=339 Identities=17% Similarity=0.185 Sum_probs=232.9
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCC--CCEEEEE--ECCCcEEEEECCCCccccccceeeEeeccCCceEEEE
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHD--HSFFVSA--SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spd--g~~laTg--s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~ 890 (1249)
...++|+ .+-.-++.|..-...|+|++|++- |.+++.- |.+..+.|||...+.+.. ........|....
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~------~vk~sne~v~~a~ 207 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG------PVKTSNEVVFLAT 207 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC------cceeccceEEEEE
Confidence 3478999 565666777777788999999983 4455443 566789999999877532 2333445688999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecC-CCCcEEEEEEecCCCCCccEEEEEECCCeEEEE
Q 000861 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLW 969 (1249)
Q Consensus 891 fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iw 969 (1249)
|+|.+..++.....|.+.+|+.+ .+.+.+- ...++. ....|.|++ |.+++ -+++|..+|.|.||
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~-----~~~l~k~-----~~~fek~ekk~Vl~v~-F~eng----dviTgDS~G~i~Iw 272 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLR-----GGSLVKR-----QGIFEKREKKFVLCVT-FLENG----DVITGDSGGNILIW 272 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEcc-----CCceEEE-----eeccccccceEEEEEE-EcCCC----CEEeecCCceEEEE
Confidence 99977666666667899999988 1222111 111222 225688998 99984 68899999999999
Q ss_pred EcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCccccc-------------------------
Q 000861 970 DTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSW------------------------- 1024 (1249)
Q Consensus 970 Dlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~------------------------- 1024 (1249)
+.++.+...... .|.+.|.+++.-.+|..| +|+.|..|..||-... .++..
T Consensus 273 ~~~~~~~~k~~~--aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 273 SKGTNRISKQVH--AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred eCCCceEEeEee--ecCCceEEEEEecCccEe-ecCccceEEecccccc-ccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 998887766664 699999999999999655 5999999999994221 11110
Q ss_pred ---------------ccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcc
Q 000861 1025 ---------------QYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMS 1089 (1249)
Q Consensus 1025 ---------------~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~ 1089 (1249)
..+|......++. +|+.. .+++++.|+.+++|+ ..+..-... ...+..
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~-hps~~---------q~~T~gqdk~v~lW~--~~k~~wt~~-----~~d~~~ 411 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLAT-HPSKN---------QLLTCGQDKHVRLWN--DHKLEWTKI-----IEDPAE 411 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEc-CCChh---------heeeccCcceEEEcc--CCceeEEEE-----ecCcee
Confidence 0134445555666 66655 899999999999999 233222222 122445
Q ss_pred cccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1090 DLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1090 ~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
+..|.|.. ..+.+...|+.++...-..+-+..... ...+.++.|+|+| +|+.|+.|+.|++|.+......+...+.
T Consensus 412 ~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 412 CADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred EeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 56666533 333344455555442222111111122 4589999999999 9999999999999999877665554332
Q ss_pred CCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1169 NLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1169 ~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
+|...|+.+. |++|+++|.+-|-|--|-.|
T Consensus 489 -------------------------------------------------~~gs~ithLD-wS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 489 -------------------------------------------------CSGSPITHLD-WSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred -------------------------------------------------ecCceeEEee-ecCCCceEEeccCceEEEEE
Confidence 3447899999 99999999999999999888
Q ss_pred C
Q 000861 1249 K 1249 (1249)
Q Consensus 1249 d 1249 (1249)
+
T Consensus 519 ~ 519 (626)
T KOG2106|consen 519 K 519 (626)
T ss_pred c
Confidence 4
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.5e-20 Score=217.56 Aligned_cols=216 Identities=18% Similarity=0.321 Sum_probs=191.6
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
.++|+-+ ++..|...|.|+..-..++.+++|+.|..+-+|.+.... +...+.+|.++|.++.|++....
T Consensus 16 Lr~~~~~-----~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------~i~S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 16 LRVWDTR-----EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------AITSLTGHESPIESLTFDTSERL 84 (825)
T ss_pred cccccch-----hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc------hhheeeccCCcceeeecCcchhh
Confidence 4567642 566799999999987778999999999999999988765 34568999999999999999999
Q ss_pred EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 898 Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
|++|+.+|+|++||++ .++ .++++.+|...+..+. |+|- +.+.+.|+.|+.+++||.+...+.
T Consensus 85 laagsasgtiK~wDle-----eAk--------~vrtLtgh~~~~~sv~-f~P~---~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLE-----EAK--------IVRTLTGHLLNITSVD-FHPY---GEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred hcccccCCceeeeehh-----hhh--------hhhhhhccccCcceee-eccc---eEEeccccccccceehhhhccCce
Confidence 9999999999999998 222 4778889999999999 9999 778999999999999999998898
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
+.+.. |...+.++.|+|+|+|++.|+.|.++++||++.|+.+..|. .|.+.+..+.| +|..- ++..|
T Consensus 148 ~~~~s--~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~-hp~e~---------Lla~G 214 (825)
T KOG0267|consen 148 HTYKS--HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEF-HPLEV---------LLAPG 214 (825)
T ss_pred eeecC--CcceeEEEeecCCCceeeccCCcceeeeecccccccccccc-ccccccccccc-Cchhh---------hhccC
Confidence 88854 89999999999999999999999999999999999999987 48999999999 99876 88899
Q ss_pred ECCCeEEEEECCCCcee
Q 000861 1058 AGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 1058 s~Dg~I~vWDl~tg~~~ 1074 (1249)
+.|+++++||+++.+.+
T Consensus 215 s~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVI 231 (825)
T ss_pred CCCceeeeeccceeEEe
Confidence 99999999999876543
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=9.5e-18 Score=187.35 Aligned_cols=367 Identities=14% Similarity=0.161 Sum_probs=241.9
Q ss_pred CCCCCCCCCccccccCCCCCccCCC-CcEE---EEecccc-CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWRPR-GILV---AHLQEHC-SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~~~-G~lv---~~L~~H~-~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
..|.|-+.-+.....-.-...|.+. |.+. ..+.++. .-|.|++|.++|. ++||..+|.|.||+..+...
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~----- 279 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI----- 279 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----
Confidence 4466666544333212235678854 4443 3455544 6899999999985 67999999999999966542
Q ss_pred eeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcc-ccccCcc------------------------
Q 000861 875 SRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV-EKYSGIS------------------------ 929 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~-~~~~~~~------------------------ 929 (1249)
......|.+.|.+++...+|.. ++|+.|..|..||-++.....-++ +.+...+
T Consensus 280 -~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 280 -SKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred -EeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 2334489999999999999954 559999999999954211111111 1111100
Q ss_pred --ceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC
Q 000861 930 --DIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR 1007 (1249)
Q Consensus 930 --~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d 1007 (1249)
.-....+|......++ .+|+ .+.+++++.|+.+++|+ ..+..|+... ..++.|+.|+|.| .++.|+..
T Consensus 358 ~~f~~~v~gh~delwgla-~hps---~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLA-THPS---KNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred CCceEEEEecccceeeEE-cCCC---hhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeecc
Confidence 0112335666777777 7777 67999999999999999 6677777765 6788999999999 99999999
Q ss_pred CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEE-EecccCCCCC
Q 000861 1008 GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQV-LRTANYDGDT 1086 (1249)
Q Consensus 1008 G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~-l~~~~~~~~~ 1086 (1249)
|...+.|..+...+..-. . ..++..+.| +|+|. ++++|+.|+.|++|-+........ +....+
T Consensus 428 G~w~V~d~e~~~lv~~~~-d-~~~ls~v~y-sp~G~---------~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g---- 491 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHT-D-NEQLSVVRY-SPDGA---------FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG---- 491 (626)
T ss_pred ceEEEEecccceeEEEEe-c-CCceEEEEE-cCCCC---------EEEEecCCCeEEEEEECCCCcEEEEeeeecC----
Confidence 999999998866665533 2 779999999 99998 999999999999999876443322 221111
Q ss_pred CcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1087 EMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1087 ~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
..|+.+.|++|+ ++.+-+.|-.|.+|....-.....+
T Consensus 492 ------------------------------------------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 492 ------------------------------------------SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred ------------------------------------------ceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence 278999999999 9999999999999944332222111
Q ss_pred eCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHh------------------hhcccccCCcccceeEEE
Q 000861 1166 CGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLA------------------AAATDSAGCHRDSILSLG 1227 (1249)
Q Consensus 1166 ~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~------------------~~~~~~l~~H~d~I~~la 1227 (1249)
..- ....|.......+.-..++.-.........+..++ .+......+|...|++++
T Consensus 530 kDv------kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~ 603 (626)
T KOG2106|consen 530 KDV------KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVA 603 (626)
T ss_pred cce------eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEE
Confidence 100 01112111111111111111111000000011111 111225668999999999
Q ss_pred eeecCCCEEEEEeCCCeEEEcC
Q 000861 1228 SVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1228 ~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|..+..+++|.+.|..|..|+
T Consensus 604 -Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 604 -FLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred -EeeCCceEEecCCCceEEEEE
Confidence 667777788777999999996
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=193.36 Aligned_cols=300 Identities=15% Similarity=0.209 Sum_probs=214.1
Q ss_pred EEEeccccCceeEEEEcCCC--CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCC
Q 000861 828 VAHLQEHCSAVNEIAISHDH--SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACD 904 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg--~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~D 904 (1249)
....+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+.++.. .....+..|+++|.++.|+| +...+++.|.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--CceEEeccCCccccceEecCCChhheeeeccC
Confidence 34566789999999999965 488889999999999997544322 13456778999999999999 55789999999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAI 983 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~ 983 (1249)
|+|++-|++ +.+ ...+...+.....+..+. |+.+ ...++.++.-|...+||.|++.. .+.+..
T Consensus 257 GtiR~~D~~------~~i-----~e~v~s~~~d~~~fs~~d-~~~e---~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l- 320 (498)
T KOG4328|consen 257 GTIRLQDFE------GNI-----SEEVLSLDTDNIWFSSLD-FSAE---SRSVLFGDNVGNFNVIDLRTDGSEYENLRL- 320 (498)
T ss_pred ceeeeeeec------chh-----hHHHhhcCccceeeeecc-ccCC---CccEEEeecccceEEEEeecCCccchhhhh-
Confidence 999999998 222 011222222333444555 7777 45677777778999999998765 444433
Q ss_pred CCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccc---cccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 984 PEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNS---WQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s---~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
|...|++++++|.. .+|++++.|++++|||+|.-....+ ...+|...|.+..| +|.+. .|++.+.
T Consensus 321 -h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF-SPs~g---------tl~TT~~ 389 (498)
T KOG4328|consen 321 -HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF-SPSGG---------TLLTTCQ 389 (498)
T ss_pred -hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE-cCCCC---------ceEeecc
Confidence 77799999999965 6789999999999999986444332 23468889999999 99987 5999999
Q ss_pred CCeEEEEECC----CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEe
Q 000861 1060 CNEVSLWNAE----NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLL 1135 (1249)
Q Consensus 1060 Dg~I~vWDl~----tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~ 1135 (1249)
|+.|+|||.. .-.....+. |... .++--......
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~-----------------------------------------t~RwlT~fKA~ 427 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIP-HNNR-----------------------------------------TGRWLTPFKAA 427 (498)
T ss_pred CCceEEeecccccccCCccceee-ccCc-----------------------------------------ccccccchhhe
Confidence 9999999974 111111111 1100 00001334567
Q ss_pred ecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhccc
Q 000861 1136 PLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATD 1214 (1249)
Q Consensus 1136 ~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1214 (1249)
|.|+. +++.|-.-..|-++|-..++.+..+.++.
T Consensus 428 W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~--------------------------------------------- 462 (498)
T KOG4328|consen 428 WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE--------------------------------------------- 462 (498)
T ss_pred eCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc---------------------------------------------
Confidence 88888 89999988999999988776555554443
Q ss_pred ccCCcccceeEEEeeecCCCEEEE-EeCCCeEEEc
Q 000861 1215 SAGCHRDSILSLGSVKLNQRLLIS-SSRDGAIKVW 1248 (1249)
Q Consensus 1215 ~l~~H~d~I~~la~~s~dg~~LaS-gs~DG~IkVW 1248 (1249)
...|.++--|+|-+..+++ |+..|.|+||
T Consensus 463 -----~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 463 -----SSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred -----ccccccceeecccccceeccCCccceEEEE
Confidence 2245566558888774555 5568999998
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3e-19 Score=183.50 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=190.1
Q ss_pred CCCCCCCccccccCCCCCccC--CCC--cEEEEeccccCceeEEEEcC--CCCEEEEEECCCcEEEEECCCCccccccce
Q 000861 802 ADLTGLPSFVRTSSIPDSGWR--PRG--ILVAHLQEHCSAVNEIAISH--DHSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 802 ~s~~G~~~~~~s~~~~~~~W~--~~G--~lv~~L~~H~~~V~~la~sp--dg~~laTgs~DgtVkIWD~~~~~~~~~~~~ 875 (1249)
....|..++..+.|...++.. ++| +++.+|.||.++|..++|.. -|.+||++|+||.|.||.-..+.- ..
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w----~k 94 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW----TK 94 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----hh
Confidence 344588888888788888887 445 79999999999999999975 789999999999999999888752 23
Q ss_pred eeEeeccCCceEEEEEecC--CCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCC
Q 000861 876 RLTYHLEGSRALCTMMLRH--SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCA 953 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspd--g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~ 953 (1249)
...+..|...|++++|-|. |-.|++|+.||.|.|.+.+.. | +...-+....|.-.|.+++ |.|....
T Consensus 95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~----g------~w~t~ki~~aH~~GvnsVs-wapa~~~ 163 (299)
T KOG1332|consen 95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS----G------GWTTSKIVFAHEIGVNSVS-WAPASAP 163 (299)
T ss_pred hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC----C------Cccchhhhhccccccceee-ecCcCCC
Confidence 4466789999999999985 568899999999999999821 1 1112334556888888888 8876332
Q ss_pred c-----------cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC----CEEEEEecCCcEEEEeCCCC
Q 000861 954 S-----------HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG----NWFVSGSSRGVLTLWDLRFL 1018 (1249)
Q Consensus 954 g-----------~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg----~~L~sgs~dG~I~lWDlr~~ 1018 (1249)
| +.|++|+.|..|++|+...++-...-.+.+|.+.|+.++|.|.- .++++++.||++.||-.+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 46999999999999999887433222347799999999999953 68999999999999987622
Q ss_pred --CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1019 --VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1019 --~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
.-..++.......+.++.| ++.|+ .|+++++|+.|++|.-.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSW-S~sGn---------~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSW-SLSGN---------ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEE-ecccc---------EEEEecCCcEEEEEEeC
Confidence 1122222234567999999 99998 99999999999999643
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=8.9e-19 Score=186.25 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=182.9
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
.+.|++.+..+..++.|.+.++++ +...+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.+++. .
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-------~ 88 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-------D 88 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-------e
Confidence 566777777777777677777777 333333334 49999999999985 4788999999999999999863 4
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.+..|..+|.|+.+++....+++||.|++|++||.. .... +..++ ....|.++. .. ++.|
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~------------~~~~d-~~kkVy~~~-v~-----g~~L 148 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVV------------VGTFD-QGKKVYCMD-VS-----GNRL 148 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccc------------ccccc-cCceEEEEe-cc-----CCEE
Confidence 667799999999999988899999999999999998 1111 11112 223677776 43 4499
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCc----ccccccCC-----
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVP----VNSWQYSQ----- 1028 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~----l~s~~~~~----- 1028 (1249)
++|+.+..|.+||+|+.....+.....-.-.++|+++-|++.-+++++-||.|.+=.+..... ...|+. |
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~ 227 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEK 227 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe-eecccC
Confidence 999999999999999987765444344466899999999888899999999988876655422 222221 2
Q ss_pred ----CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1029 ----VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1029 ----~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
--||++|+| +|-.. .+++|+.||-|.+||+.+.+.+..+.
T Consensus 228 ~~~~~yPVNai~F-hp~~~---------tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 228 DTEIIYPVNAIAF-HPIHG---------TFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred CceEEEEeceeEe-ccccc---------eEEecCCCceEEEccCcchhhhhhcc
Confidence 128999999 99876 89999999999999998877666554
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=1.3e-17 Score=190.74 Aligned_cols=270 Identities=11% Similarity=0.111 Sum_probs=189.8
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEE-EEEeCCCeEEEEEccccccCCCccccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQV-VVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~L-asgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
+..++|++.||.+++||..+++ ....+..+.. +.+++|+|+++.+ ++++.++.|++||.. .++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~------~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-----~~~~--- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE------VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA-----TGEV--- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc------eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC-----CCcE---
Confidence 3578999999999999998876 2345555543 7789999999876 566788999999987 1221
Q ss_pred cCccceeeecCCCCcEEEEEEecCCCCCccEEEE-EECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE
Q 000861 926 SGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY-STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG 1004 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s-gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg 1004 (1249)
++.+..+.. +..+. |+|+ ++.+++ +..++.|++||+++++.+..+.. ...+.+++|+|++.+++++
T Consensus 66 -----~~~~~~~~~-~~~~~-~~~~---g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~ 132 (300)
T TIGR03866 66 -----IGTLPSGPD-PELFA-LHPN---GKILYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNT 132 (300)
T ss_pred -----EEeccCCCC-ccEEE-ECCC---CCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEE
Confidence 223333322 44566 8998 555554 45689999999998877665542 3456889999999999998
Q ss_pred ecCC-cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-CCCeEEEEECCCCceeEEEecccC
Q 000861 1005 SSRG-VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNAENGSCHQVLRTANY 1082 (1249)
Q Consensus 1005 s~dG-~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl~tg~~~~~l~~~~~ 1082 (1249)
+.++ .+..||.+++........ ...+..+.| +|++. ++++++ .++.|++||++++++...+.....
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~-s~dg~---------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEIVDNVLV--DQRPRFAEF-TADGK---------ELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred ecCCCeEEEEeCCCCeEEEEEEc--CCCccEEEE-CCCCC---------EEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 8775 467789988776654432 234577889 99987 676554 589999999999887666542110
Q ss_pred CCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-e-EEEEeCCCcEEEEeCCCCC
Q 000861 1083 DGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-D-LLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1083 ~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~-L~tgs~Dg~IriWDl~~~~ 1160 (1249)
... ........++|+|+| + +++.+.++.|.+||+.+++
T Consensus 201 ~~~----------------------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 201 GVH----------------------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ccc----------------------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 000 000023467889999 4 4455667789999998765
Q ss_pred ccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEE-
Q 000861 1161 RSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISS- 1239 (1249)
Q Consensus 1161 ~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSg- 1239 (1249)
....+. +...+.+++ |+|+|++|+++
T Consensus 241 ~~~~~~----------------------------------------------------~~~~~~~~~-~~~~g~~l~~~~ 267 (300)
T TIGR03866 241 VLDYLL----------------------------------------------------VGQRVWQLA-FTPDEKYLLTTN 267 (300)
T ss_pred EEEEEE----------------------------------------------------eCCCcceEE-ECCCCCEEEEEc
Confidence 533221 223577898 99999999876
Q ss_pred eCCCeEEEcC
Q 000861 1240 SRDGAIKVWK 1249 (1249)
Q Consensus 1240 s~DG~IkVWd 1249 (1249)
+.+|.|+|||
T Consensus 268 ~~~~~i~v~d 277 (300)
T TIGR03866 268 GVSNDVSVID 277 (300)
T ss_pred CCCCeEEEEE
Confidence 5699999997
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=3.9e-19 Score=186.56 Aligned_cols=216 Identities=15% Similarity=0.272 Sum_probs=164.5
Q ss_pred ccccCceeEEEEcC-CCCEEEEEECCCcEEEEECCCCcc----ccccc--e---eeEeeccCCceEEEEEec-CCCEEEE
Q 000861 832 QEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEK----DISFR--S---RLTYHLEGSRALCTMMLR-HSAQVVV 900 (1249)
Q Consensus 832 ~~H~~~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~----~~~~~--~---~~t~~~h~~~V~sl~fsp-dg~~Las 900 (1249)
.-|.+.|+++.+.+ .|+++++|+.||.+.+||++.... ....+ + +..-.+|.-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34889999999987 589999999999999999986541 11111 1 112235667899999999 6678999
Q ss_pred EeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceee
Q 000861 901 GACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTL 980 (1249)
Q Consensus 901 gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l 980 (1249)
++.|.+++|||.. +.+ ....++ .++.|.+-+ ++|-..+..++++|+.+-.|++.|+.+|...+++
T Consensus 120 sSFDhtlKVWDtn-TlQ------------~a~~F~-me~~VYsha-mSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 120 SSFDHTLKVWDTN-TLQ------------EAVDFK-MEGKVYSHA-MSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred ccccceEEEeecc-cce------------eeEEee-cCceeehhh-cChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 9999999999998 211 111111 234555555 6664322347888999999999999999998888
Q ss_pred ecCCCCCceEEEEEcCCCCE-EEEEecCCcEEEEeCCCC-Cccc-------------ccccCCCCCeeEEEEEcCCCCCc
Q 000861 981 KAIPEEGYVSSLVTGPCGNW-FVSGSSRGVLTLWDLRFL-VPVN-------------SWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 981 ~~~~h~~~I~sl~~spdg~~-L~sgs~dG~I~lWDlr~~-~~l~-------------s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
.+|.+.|.++.|+|...| |++|+.||.|++||+|.- .+.. .-...|.+.+..++| ..++.
T Consensus 185 --sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~-tSd~~-- 259 (397)
T KOG4283|consen 185 --SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW-TSDAR-- 259 (397)
T ss_pred --ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee-cccch--
Confidence 569999999999998765 678999999999999853 1111 112357788999999 88887
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCCcee
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~ 1074 (1249)
++++++.|..+++|+.++|+..
T Consensus 260 -------~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 260 -------YLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred -------hhhhccCccceEEeecccCccc
Confidence 8999999999999999988643
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.7e-18 Score=178.51 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=190.0
Q ss_pred eccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEE
Q 000861 880 HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 880 ~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s 959 (1249)
.+|..-|.++.|.+.|+.+|+|+.|++|+|||.+ .. ++ ...+-..++.|.+.|..+..-+|.- |+.+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~-~~--s~------~W~~Ts~Wrah~~Si~rV~WAhPEf--GqvvA~ 78 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDST-SD--SG------TWSCTSSWRAHDGSIWRVVWAHPEF--GQVVAT 78 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEecc-CC--CC------ceEEeeeEEecCCcEEEEEecCccc--cceEEE
Confidence 4577889999999999999999999999999976 22 12 2234567888999999999445553 789999
Q ss_pred EECCCeEEEEEcCC-----Ccccee--eecCCCCCceEEEEEcCC--CCEEEEEecCCcEEEEeCCCCCcccccccC---
Q 000861 960 STQNCGIHLWDTRS-----NSNTWT--LKAIPEEGYVSSLVTGPC--GNWFVSGSSRGVLTLWDLRFLVPVNSWQYS--- 1027 (1249)
Q Consensus 960 gs~dg~I~iwDlrt-----~~~~~~--l~~~~h~~~I~sl~~spd--g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~--- 1027 (1249)
++.|+++.||.-.. ....|. -......+.|+.++|.|. |-.|++++.||+++||+.-....+..|+..
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999999997621 111121 122446789999999995 678999999999999998665555544432
Q ss_pred ---------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC-----CeEEEEECCCCc-eeEEEecccCCCCCCccccc
Q 000861 1028 ---------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC-----NEVSLWNAENGS-CHQVLRTANYDGDTEMSDLP 1092 (1249)
Q Consensus 1028 ---------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D-----g~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~ 1092 (1249)
+..+-.++.| +|..- ..++|++|+.+ +.+.||....+. ......
T Consensus 159 ~~~~~pp~~~~~~~~CvsW-n~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva-------------- 217 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSW-NPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA-------------- 217 (361)
T ss_pred hhccCCcccccCcceEEee-ccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeeh--------------
Confidence 3345677888 65433 45678887765 478888765432 111111
Q ss_pred ccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-----eEEEEeCCCcEEEEeCCCCCccEEEeC
Q 000861 1093 WAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-----DLLTGGTDLKIRRWDHCSPGRSYCICG 1167 (1249)
Q Consensus 1093 ~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-----~L~tgs~Dg~IriWDl~~~~~~~~l~g 1167 (1249)
...++...|+.++|.|+- .|++++.|| |+||++..... .+...
T Consensus 218 ------------------------------~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s-~i~~e 265 (361)
T KOG2445|consen 218 ------------------------------ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS-AIEEE 265 (361)
T ss_pred ------------------------------hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc-hhhhh
Confidence 112455588999998864 789999999 99999974321 11100
Q ss_pred CCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEE
Q 000861 1168 PNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1168 ~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
....+ ..... ..+..+ ..+.+|+..|+.+. |+-.|.+|+|.|.||+||+
T Consensus 266 e~~~~-~~~~~------l~v~~v-----------------------s~~~~H~~~VWrv~-wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 266 EVLAP-DLMTD------LPVEKV-----------------------SELDDHNGEVWRVR-WNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred cccCC-CCccc------cceEEe-----------------------eeccCCCCceEEEE-EeeeeeEEeecCCCceeee
Confidence 00000 00000 011111 13568999999999 9999999999999999999
Q ss_pred cC
Q 000861 1248 WK 1249 (1249)
Q Consensus 1248 Wd 1249 (1249)
|+
T Consensus 315 Wk 316 (361)
T KOG2445|consen 315 WK 316 (361)
T ss_pred hh
Confidence 96
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.2e-18 Score=201.46 Aligned_cols=388 Identities=13% Similarity=0.145 Sum_probs=248.8
Q ss_pred CcEEEEeccccCceeEEEEcCCC---CEEEEEECCCcEEEEECCCCccc---------------ccccee----------
Q 000861 825 GILVAHLQEHCSAVNEIAISHDH---SFFVSASDDSTVKVWDSRKLEKD---------------ISFRSR---------- 876 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg---~~laTgs~DgtVkIWD~~~~~~~---------------~~~~~~---------- 876 (1249)
-+.+..+.||.+.|.+++|..-+ -++||+|.|..||||.+.-.... ..+...
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 36788999999999999998644 38999999999999987432200 000011
Q ss_pred eEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 877 LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
..+.||...|.++.|+|.+..|++++.|.++.+|.-+.. +|-- ...-.+-...+..+...... |+|+ +..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~---tGiW---v~~vRlGe~gg~a~GF~g~l-w~~n---~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN---TGIW---VDVVRLGEVGGSAGGFWGGL-WSPN---SNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCc---cceE---EEEEEeecccccccceeeEE-EcCC---CCE
Confidence 123489999999999999999999999999999998721 1111 00001111223345577777 9999 679
Q ss_pred EEEEECCCeEEEEEcCCCc-cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccc-----cCCCC
Q 000861 957 FMYSTQNCGIHLWDTRSNS-NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ-----YSQVC 1030 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~-~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~-----~~~~~ 1030 (1249)
+++-+..|..++|-..... .....-..+|.+.|++++|+|.|.+|++.+.|-+-+++-.- |+... |. .-|+.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-wHEiaRPQiHGy 408 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-WHEIARPQIHGY 408 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-eeeecccccccc
Confidence 9999999999999833221 12222346899999999999999999999999999998653 22211 21 12666
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCcee--E-----EEeccc-CCCCCCcccccccccCCCCCC
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCH--Q-----VLRTAN-YDGDTEMSDLPWAFARPSSRS 1102 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~--~-----~l~~~~-~~~~~~i~~l~~sp~~p~~~~ 1102 (1249)
.++++++ -+... .+++|+...-+++|+....-.. . .+.... ......+..+-.+. .+....
T Consensus 409 Dl~c~~~-vn~~~---------~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~~ 477 (764)
T KOG1063|consen 409 DLTCLSF-VNEDL---------QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFPG 477 (764)
T ss_pred cceeeeh-ccCCc---------eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCccc
Confidence 8899998 55322 4566666677899988632100 0 011000 00000111111110 011000
Q ss_pred CCCccccccc--------cc--------------cccc-cccCCCCCCCCCeEEEeecCCC-eEEEEeCC-----CcEEE
Q 000861 1103 NPKTDLRRNV--------NQ--------------KYRV-DELNEPPPRLLGIRSLLPLPGG-DLLTGGTD-----LKIRR 1153 (1249)
Q Consensus 1103 ~~s~dg~~~~--------~~--------------~~~~-~~~~~~~~~~~~V~sl~~spdg-~L~tgs~D-----g~Iri 1153 (1249)
. ..+|...+ .. ...+ .+.....+|...|.+++.+|+| .++|++.. -.|++
T Consensus 478 e-~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 478 E-TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred c-cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence 0 00111100 00 0001 1223346888999999999999 88888653 46999
Q ss_pred EeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCc-cchhhHHHHHhhh------cccccCCcccceeEE
Q 000861 1154 WDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPL-TSKLTAKAVLAAA------ATDSAGCHRDSILSL 1226 (1249)
Q Consensus 1154 WDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~-~~~~~~~~~~~~~------~~~~l~~H~d~I~~l 1226 (1249)
|+..+-...+.+.+|. -.+..+.|++++..... +.+.+...+.... .....+.|+..|+++
T Consensus 557 w~t~~W~~~~~L~~Hs------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 557 WNTANWLQVQELEGHS------------LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred Eeccchhhhheecccc------------eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 9999988888887776 24556777777766554 3333332222111 012367899999999
Q ss_pred EeeecCCCEEEEEeCCCeEEEcC
Q 000861 1227 GSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1227 a~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
. |+|++.+++|+|+|.+|+||.
T Consensus 625 s-W~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 625 S-WSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred c-cCcccceeEEecCCceEEEEe
Confidence 9 999999999999999999994
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.9e-19 Score=210.21 Aligned_cols=207 Identities=14% Similarity=0.277 Sum_probs=163.8
Q ss_pred ceeEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccc
Q 000861 837 AVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDH 914 (1249)
Q Consensus 837 ~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~ 914 (1249)
.+..+.|+. +.++|||++..|.|.+||+...... +....|..|...+.+++|++ ..++|++||.||+|++||++.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 355677764 4579999999999999999874211 13447788999999999998 457899999999999999981
Q ss_pred cccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEE
Q 000861 915 ISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT 994 (1249)
Q Consensus 915 ~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~ 994 (1249)
. + ...++.+....|.++. |+|.. +..++++...|.+.+||+|..... .++...|.|+|.|+.|
T Consensus 166 -~----~--------S~~t~~~nSESiRDV~-fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~-~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 166 -K----K--------SKSTFRSNSESIRDVK-FSPGY--GNKFASIHDSGYLQLWDLRQPDRC-EKKLTAHNGPVLCLNW 228 (839)
T ss_pred -c----c--------ccccccccchhhhcee-eccCC--CceEEEecCCceEEEeeccCchhH-HHHhhcccCceEEEee
Confidence 1 1 1233344667788998 99985 569999999999999999976542 3445679999999999
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC--CCeEEEEECCCCc
Q 000861 995 GPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG--CNEVSLWNAENGS 1072 (1249)
Q Consensus 995 spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~--Dg~I~vWDl~tg~ 1072 (1249)
+|++.|||+|+.|+.|+|||+..++.-.........++.++.| -|... .+|++++. |-.|+|||++..-
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW-RP~~~--------~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW-RPARS--------YHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee-ccCcc--------chhhhhhccccceEEEEeecccc
Confidence 9999999999999999999998766554444445679999999 88875 46777654 6789999997543
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=2.7e-17 Score=188.19 Aligned_cols=266 Identities=14% Similarity=0.067 Sum_probs=191.5
Q ss_pred cCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEE
Q 000861 814 SSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFF-VSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMM 891 (1249)
Q Consensus 814 ~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~l-aTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~f 891 (1249)
.+....+|+ .+|+++..+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++. ...+..+.. +..++|
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------IGTLPSGPD-PELFAL 80 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE------EEeccCCCC-ccEEEE
Confidence 355678899 57889999987654 6789999999865 6778899999999988763 223333333 567899
Q ss_pred ecCCCEEEEE-eCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCC-eEEEE
Q 000861 892 LRHSAQVVVG-ACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC-GIHLW 969 (1249)
Q Consensus 892 spdg~~Lasg-s~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg-~I~iw 969 (1249)
+|+++.++++ +.|+.+++||+. . +. .+..+.. ...+.++. |+|+ +..+++++.++ .+..|
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~-~----~~--------~~~~~~~-~~~~~~~~-~~~d---g~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIE-T----RK--------VLAEIPV-GVEPEGMA-VSPD---GKIVVNTSETTNMAHFI 142 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECC-C----Ce--------EEeEeeC-CCCcceEE-ECCC---CCEEEEEecCCCeEEEE
Confidence 9999877655 568999999998 1 11 1233321 23356677 9998 67888887765 57788
Q ss_pred EcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCCcccccccC----C--CCCeeEEEEEcCCC
Q 000861 970 DTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG-SSRGVLTLWDLRFLVPVNSWQYS----Q--VCPIEKMCLFVPPP 1042 (1249)
Q Consensus 970 Dlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg-s~dG~I~lWDlr~~~~l~s~~~~----~--~~~I~~l~~~sp~g 1042 (1249)
|.++++....... ...+.+++|+|++++++++ ..+|.|.+||+++++.+..+... + ......+.| +|++
T Consensus 143 d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg 218 (300)
T TIGR03866 143 DTKTYEIVDNVLV---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDG 218 (300)
T ss_pred eCCCCeEEEEEEc---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCC
Confidence 9988876554432 3356789999999988655 46899999999998876655321 1 112346788 8998
Q ss_pred CCcccCCCCCEEEEE-ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccccccccc
Q 000861 1043 NAAVSTTARPLIYVA-AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDEL 1121 (1249)
Q Consensus 1043 ~~~~~~~~~~~l~t~-s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~ 1121 (1249)
+ +++++ +.++.+.+||..+++....+.. +
T Consensus 219 ~---------~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~--------------------------------------- 248 (300)
T TIGR03866 219 K---------TAFVALGPANRVAVVDAKTYEVLDYLLV--G--------------------------------------- 248 (300)
T ss_pred C---------EEEEEcCCCCeEEEEECCCCcEEEEEEe--C---------------------------------------
Confidence 7 65554 4567899999988876544321 0
Q ss_pred CCCCCCCCCeEEEeecCCC-eEEEE-eCCCcEEEEeCCCCCccEEEe
Q 000861 1122 NEPPPRLLGIRSLLPLPGG-DLLTG-GTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1122 ~~~~~~~~~V~sl~~spdg-~L~tg-s~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
..+.+++|+|+| +|+++ +.+|.|++||+.+++....+.
T Consensus 249 -------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 249 -------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred -------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 156788999999 77665 569999999999998877765
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6.8e-20 Score=212.18 Aligned_cols=228 Identities=20% Similarity=0.362 Sum_probs=193.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcccc
Q 000861 845 HDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEK 924 (1249)
Q Consensus 845 pdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~ 924 (1249)
|.+.+++.+..+-.+++||.+.. ..|...|.++..-..++.+++|+.|..+-+|.+.
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~----------- 58 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG----------- 58 (825)
T ss_pred Ccccccceeeeeeccccccchhh------------hhhhhhhceeeeeccceeeccCCCceeecccccc-----------
Confidence 44456666667777888987643 3577778888877778899999999999999987
Q ss_pred ccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE
Q 000861 925 YSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG 1004 (1249)
Q Consensus 925 ~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg 1004 (1249)
....+..+.+|+++|-++. |++. ..+|++|+.+|+|++||+..++.+.++ .+|...+.++.|+|-+.+.+.|
T Consensus 59 --kp~~i~S~~~hespIeSl~-f~~~---E~LlaagsasgtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 59 --KPNAITSLTGHESPIESLT-FDTS---ERLLAAGSASGTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred --CCchhheeeccCCcceeee-cCcc---hhhhcccccCCceeeeehhhhhhhhhh--hccccCcceeeeccceEEeccc
Confidence 1223455888999999999 9998 779999999999999999999988887 5689999999999999999999
Q ss_pred ecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCC
Q 000861 1005 SSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDG 1084 (1249)
Q Consensus 1005 s~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~ 1084 (1249)
+.|+.+++||.|...|.+.+.. |...+..+.| .|+|. +++.++.|.+++|||...|+....|..+.+
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~l-sP~Gr---------~v~~g~ed~tvki~d~~agk~~~ef~~~e~-- 197 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRL-SPDGR---------WVASGGEDNTVKIWDLTAGKLSKEFKSHEG-- 197 (825)
T ss_pred cccccceehhhhccCceeeecC-CcceeEEEee-cCCCc---------eeeccCCcceeeeecccccccccccccccc--
Confidence 9999999999999999999875 8888999999 99998 999999999999999999988777764433
Q ss_pred CCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1085 DTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1085 ~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
.+.++.|+|.. .+++||.|++|++||+++.+.
T Consensus 198 ---------------------------------------------~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 198 ---------------------------------------------KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred ---------------------------------------------cccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 56677788888 899999999999999986543
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.7e-18 Score=196.77 Aligned_cols=285 Identities=17% Similarity=0.191 Sum_probs=197.3
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcccccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS 926 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~ 926 (1249)
...|+.+.+||.|.++|.........-+....+..|.+.|..+.|.|....|++++.|.++++||+. .++..|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G------ 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVG------ 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeec------
Confidence 3588999999999999987654211111223566799999999999977899999999999999998 332222
Q ss_pred CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc--c------------------eee-----e
Q 000861 927 GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN--T------------------WTL-----K 981 (1249)
Q Consensus 927 ~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~--~------------------~~l-----~ 981 (1249)
.+.+.+|.+.|-+++ |.+.++. .+++|+.||.|.+||+|.... . ..+ +
T Consensus 137 ----~~~~~GH~~SvkS~c-f~~~n~~--vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 137 ----GRLNLGHTGSVKSEC-FMPTNPA--VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ----ceeecccccccchhh-hccCCCc--ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 234677999999999 9998754 999999999999999985431 0 000 0
Q ss_pred cCCCCCceEE---EEEcCCCCEEEEEec-CCcEEEEeCCCCCcccccc------cC-C---CCCeeEEEEEcCCCCCccc
Q 000861 982 AIPEEGYVSS---LVTGPCGNWFVSGSS-RGVLTLWDLRFLVPVNSWQ------YS-Q---VCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 982 ~~~h~~~I~s---l~~spdg~~L~sgs~-dG~I~lWDlr~~~~l~s~~------~~-~---~~~I~~l~~~sp~g~~~~~ 1047 (1249)
...+.+.|.+ +.+..|...|++++. |+.|++||+|......... .+ + .-.+.+++. ...|.
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt---- 284 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGT---- 284 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe-cCCCC----
Confidence 0123334554 555678888998887 9999999999755433211 11 1 124556666 55555
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCC
Q 000861 1048 TTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPR 1127 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~ 1127 (1249)
++++.+.|+.|++||+.+-...-... +.++. . ..
T Consensus 285 -----~L~AsCtD~sIy~ynm~s~s~sP~~~-~sg~~--------------~--------------~s------------ 318 (720)
T KOG0321|consen 285 -----YLFASCTDNSIYFYNMRSLSISPVAE-FSGKL--------------N--------------SS------------ 318 (720)
T ss_pred -----eEEEEecCCcEEEEeccccCcCchhh-ccCcc--------------c--------------ce------------
Confidence 88888889999999997543211111 00000 0 00
Q ss_pred CCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHH
Q 000861 1128 LLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKA 1206 (1249)
Q Consensus 1128 ~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~ 1206 (1249)
--..-..+||+ ++++|+.|...++|.+.+.+..-.
T Consensus 319 --f~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~------------------------------------------ 354 (720)
T KOG0321|consen 319 --FYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA------------------------------------------ 354 (720)
T ss_pred --eeeeeecCCCCceEeccCCCcceeeeeecCccCChh------------------------------------------
Confidence 11122346888 999999999999999988765221
Q ss_pred HHhhhcccccCCcccceeEEEeeecC-CCEEEEEeCCCeEEEcC
Q 000861 1207 VLAAAATDSAGCHRDSILSLGSVKLN-QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1207 ~~~~~~~~~l~~H~d~I~~la~~s~d-g~~LaSgs~DG~IkVWd 1249 (1249)
.+.||.-.|++++ |.|. -.-++|+++|-.++||+
T Consensus 355 --------~l~Ght~eVt~V~-w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 355 --------LLLGHTREVTTVR-WLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred --------hhhCcceEEEEEe-eccccCCCceeeccCcceEEEe
Confidence 2448999999999 6654 44588889999999996
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.2e-17 Score=189.78 Aligned_cols=307 Identities=14% Similarity=0.147 Sum_probs=217.6
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC--EEEEEeC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA--QVVVGAC 903 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~--~Lasgs~ 903 (1249)
.+-..++||++.|.||...|.|.+|++||.||+|+||.+.++.+ ..++.. .+.|.|++|+|.+. .||++ .
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc------vr~~~~-d~~I~~vaw~P~~~~~vLAvA-~ 462 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC------VRTVQF-DSEIRSVAWNPLSDLCVLAVA-V 462 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE------EEEEee-cceeEEEEecCCCCceeEEEE-e
Confidence 45667899999999999999999999999999999999999874 334443 34699999999764 34444 3
Q ss_pred CCeEEEEEccccccC----CCcc--------------ccccC------ccceeeecCCCCcEEEEEEecCCCCCccEEEE
Q 000861 904 DGIIHMFSVDHISRG----LGNV--------------EKYSG------ISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~----~g~~--------------~~~~~------~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s 959 (1249)
++.+.+.+.....+- +..+ ..+.. ...++..-.|...|..+. |+.. |.+|++
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt-WHrk---GDYlat 538 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT-WHRK---GDYLAT 538 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee-eecC---CceEEE
Confidence 444555554311000 0000 00000 001223334667788888 8888 789988
Q ss_pred EECC---CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEE
Q 000861 960 STQN---CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMC 1036 (1249)
Q Consensus 960 gs~d---g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~ 1036 (1249)
...+ ..|.|.++........+ ....|.|.++.|+|...+|++++.. .|++||+..+..++.+.. ....|..++
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF--~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~t-g~kwiS~ms 614 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPF--RKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLT-GSKWISSMS 614 (733)
T ss_pred eccCCCcceEEEEecccccccCch--hhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhc-CCeeeeeee
Confidence 7654 57999999877655444 3357899999999999999988864 899999988888887654 445789999
Q ss_pred EEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccc
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQK 1115 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~ 1115 (1249)
. +|.|. -|++++.|+.+..+|+.-+. ..+.++
T Consensus 615 i-hp~GD---------nli~gs~d~k~~WfDldlsskPyk~lr------------------------------------- 647 (733)
T KOG0650|consen 615 I-HPNGD---------NLILGSYDKKMCWFDLDLSSKPYKTLR------------------------------------- 647 (733)
T ss_pred e-cCCCC---------eEEEecCCCeeEEEEcccCcchhHHhh-------------------------------------
Confidence 9 99988 79999999999999987442 222222
Q ss_pred ccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccc
Q 000861 1116 YRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERK 1194 (1249)
Q Consensus 1116 ~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~ 1194 (1249)
-|...+++++|++.- .+++|+.||++.++.-.--... +..+ .++|
T Consensus 648 ----------~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--~qnp-------------------liVP--- 693 (733)
T KOG0650|consen 648 ----------LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL--LQNP-------------------LIVP--- 693 (733)
T ss_pred ----------hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh--hcCC-------------------ceEe---
Confidence 233378899998877 9999999999998853210000 0000 0111
Q ss_pred cCCccchhhHHHHHhhhcccccCCcccc----eeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1195 RQPLTSKLTAKAVLAAAATDSAGCHRDS----ILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1195 ~~~~~~~~~~~~~~~~~~~~~l~~H~d~----I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
...+++|... |.++. |+|...+|+|+|.||+|++|
T Consensus 694 ------------------lK~L~gH~~~~~~gVLd~~-wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 ------------------LKRLRGHEKTNDLGVLDTI-WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------------------eeeccCceeecccceEeec-ccCCCceEEecCCCceEEee
Confidence 1134566554 99998 99999999999999999999
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.6e-18 Score=179.06 Aligned_cols=290 Identities=12% Similarity=0.178 Sum_probs=204.2
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccccc
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISR 917 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~ 917 (1249)
-+|+.|++.|.++|.|+.||.|.|||+.+.. ....+.+|..+|++++|+++|+.|+++|.|..|.+||+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~---- 95 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL---- 95 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc----
Confidence 7899999999999999999999999999865 345788999999999999999999999999999999998
Q ss_pred CCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC---CCceEEEEE
Q 000861 918 GLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE---EGYVSSLVT 994 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h---~~~I~sl~~ 994 (1249)
.|. +++.+. ...+|+.+. |+|... +..++.-.+..-.+.++..+.. ..+..... .....+..|
T Consensus 96 -~gs--------~l~rir-f~spv~~~q-~hp~k~--n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 96 -KGS--------PLKRIR-FDSPVWGAQ-WHPRKR--NKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred -CCC--------ceeEEE-ccCccceee-eccccC--CeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccc
Confidence 232 233332 356788887 888742 3444444444444445443221 12211111 112233468
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCcee
Q 000861 995 GPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 995 spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~ 1074 (1249)
++.|+++++|+..|.+.++|..+.+++.+++......|.++.+ +..|. .++.-+.|+.|+.|+++.--..
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~-s~~g~---------~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIV-SRKGR---------FLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEE-eccCc---------EEEEecCCceEEEEehhhhccc
Confidence 9999999999999999999999999999887655468999999 77777 8999999999999998632110
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe-CCCcEE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG-TDLKIR 1152 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs-~Dg~Ir 1152 (1249)
-+ .+ ++. | ..++.++- ....-.+++|+.+| ++++|+ .-..++
T Consensus 232 --~r--~~----e~e--------~----------------~~K~qDvV----Nk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 232 --GR--DG----EVE--------P----------------EHKLQDVV----NKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred --Cc--cC----CcC--------h----------------hHHHHHHH----hhhhhhheeecCCccEEEeccccceeEE
Confidence 00 00 000 0 00000000 00033578899999 666555 456899
Q ss_pred EEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecC
Q 000861 1153 RWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLN 1232 (1249)
Q Consensus 1153 iWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~d 1232 (1249)
+|.-..|..++++.|.. .....++. |+|-
T Consensus 276 IWE~~~GsLVKILhG~k--------------------------------------------------gE~l~DV~-whp~ 304 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTK--------------------------------------------------GEELLDVN-WHPV 304 (405)
T ss_pred EEecCCcceeeeecCCc--------------------------------------------------hhheeecc-cccc
Confidence 99999999999998764 12345677 7777
Q ss_pred CCEEEEEeCCCeEEEcC
Q 000861 1233 QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1233 g~~LaSgs~DG~IkVWd 1249 (1249)
...++|- ..|+|+||.
T Consensus 305 rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWA 320 (405)
T ss_pred eeeeeec-cCCceEEEE
Confidence 7777776 788999983
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=184.34 Aligned_cols=218 Identities=21% Similarity=0.365 Sum_probs=175.7
Q ss_pred EeccccCceeEEEEcCCC--CEEEEEECCCcEEEEECCCCc----------cccccceeeEeeccCCceEEEEEecC-CC
Q 000861 830 HLQEHCSAVNEIAISHDH--SFFVSASDDSTVKVWDSRKLE----------KDISFRSRLTYHLEGSRALCTMMLRH-SA 896 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg--~~laTgs~DgtVkIWD~~~~~----------~~~~~~~~~t~~~h~~~V~sl~fspd-g~ 896 (1249)
..-.|.+.|+.+..++-+ .+.++-+..|.|+|||+...- +...+++..++.+|.+.=++++|+|- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345689999999998865 466777899999999986321 22345688899999999999999992 33
Q ss_pred EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 897 QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 897 ~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
.|++|..-+.|++|.... +. -++ .-+.+.+|...|-.++ |+|.. ..++++|+.||+|+|||+|.+..
T Consensus 226 ~LlsGDc~~~I~lw~~~~-g~--W~v-------d~~Pf~gH~~SVEDLq-WSptE--~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPST-GS--WKV-------DQRPFTGHTKSVEDLQ-WSPTE--DGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccccCccccceEeeeecc-Cc--eee-------cCccccccccchhhhc-cCCcc--CceEEeeecCceEEEEEecCCCc
Confidence 578888888899999872 11 111 1233556899999999 99985 45999999999999999999965
Q ss_pred ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC---CCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCE
Q 000861 977 TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF---LVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPL 1053 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~---~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~ 1053 (1249)
...+....|.+.|.-+.|+....+|++|+.||+++|||+|. +.++..+.. |..+|+++.| +|... ..
T Consensus 293 ~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW-~p~e~--------s~ 362 (440)
T KOG0302|consen 293 KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEW-HPHED--------SV 362 (440)
T ss_pred cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEe-ccccC--------ce
Confidence 55555567999999999999888999999999999999984 667888875 9999999999 98765 46
Q ss_pred EEEEECCCeEEEEECCC
Q 000861 1054 IYVAAGCNEVSLWNAEN 1070 (1249)
Q Consensus 1054 l~t~s~Dg~I~vWDl~t 1070 (1249)
+++++.|+.|.+||+..
T Consensus 363 iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSV 379 (440)
T ss_pred EEeccCCCcEEEEEeec
Confidence 88888999999999864
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.3e-17 Score=192.94 Aligned_cols=313 Identities=15% Similarity=0.158 Sum_probs=220.1
Q ss_pred CCCCccCCCC-cEEEEeccccCceeEEEEcCCCC---EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEE
Q 000861 816 IPDSGWRPRG-ILVAHLQEHCSAVNEIAISHDHS---FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMM 891 (1249)
Q Consensus 816 ~~~~~W~~~G-~lv~~L~~H~~~V~~la~spdg~---~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~f 891 (1249)
..+.+|+|.- ..+.++.||.++|+|+.|-|+.+ ++++|+.||.|++|.++... +....++.+|...+ +++
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~----~~~i~~~~g~~~~~--~cv 107 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY----LIKIYTIQGHCKEC--VCV 107 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh----eEEEEeecCcceeE--EEE
Confidence 4577899754 47788999999999999999887 89999999999999998322 22455667766544 444
Q ss_pred ecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecC--CCCcEEEEEEecCCCCCccEEEEEECCCeEEEE
Q 000861 892 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT--KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLW 969 (1249)
Q Consensus 892 spdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~--h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iw 969 (1249)
........+.+.|+++.+||.. . .++ .....+.. ..--..|+. +.++. ..-.++.|+.+..|.++
T Consensus 108 ~a~~~~~~~~~ad~~v~vw~~~-~----~e~------~~~~~~rf~~k~~ipLcL~-~~~~~-~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 108 VARSSVMTCKAADGTVSVWDKQ-Q----DEV------FLLAVLRFEIKEAIPLCLA-ALKNN-KTFLLACGGSKFVVDLY 174 (764)
T ss_pred EeeeeEEEeeccCceEEEeecC-C----Cce------eeehheehhhhhHhhHHHh-hhccC-CcEEEEecCcceEEEEe
Confidence 4433333334789999999995 1 111 01111111 122233444 44432 13356667777888888
Q ss_pred EcCCCccceeeecCCCCCceEEEEEcCCC---CEEEEEecCCcEEEEeCCCCC---------------------c---cc
Q 000861 970 DTRSNSNTWTLKAIPEEGYVSSLVTGPCG---NWFVSGSSRGVLTLWDLRFLV---------------------P---VN 1022 (1249)
Q Consensus 970 Dlrt~~~~~~l~~~~h~~~I~sl~~spdg---~~L~sgs~dG~I~lWDlr~~~---------------------~---l~ 1022 (1249)
.-.+.+........+|.+.|.+++|...+ -+|++++.|.+|+||.+.-+. . +.
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 77666666666678899999999998754 488999999999999875322 0 11
Q ss_pred ------ccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC--ceeEEEecccCCCCCCccccccc
Q 000861 1023 ------SWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG--SCHQVLRTANYDGDTEMSDLPWA 1094 (1249)
Q Consensus 1023 ------s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg--~~~~~l~~~~~~~~~~i~~l~~s 1094 (1249)
.+..||...|+++.| +|.+. .|++++.|.++.+|...+. --+...+...-
T Consensus 255 ~~is~eall~GHeDWV~sv~W-~p~~~---------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~------------ 312 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWW-HPEGL---------DLLSASADKSMIIWKPDENTGIWVDVVRLGEV------------ 312 (764)
T ss_pred EEEehhhhhcCcccceEEEEE-ccchh---------hheecccCcceEEEecCCccceEEEEEEeecc------------
Confidence 223479999999999 99986 7999999999999987643 33333331110
Q ss_pred ccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCC
Q 000861 1095 FARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGV 1173 (1249)
Q Consensus 1095 p~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~ 1173 (1249)
.+...+..+..|+|++ .+++-|..|..++|...+........
T Consensus 313 ------------------------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~------- 355 (764)
T KOG1063|consen 313 ------------------------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP------- 355 (764)
T ss_pred ------------------------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc-------
Confidence 1222377889999999 88899999999999944332211111
Q ss_pred CCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1174 GNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1174 ~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
...||.+.|++++ |+|.|.+|.|+|.|.+-|++
T Consensus 356 -----------------------------------------~iSGH~~~V~dv~-W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 356 -----------------------------------------VISGHVDGVKDVD-WDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred -----------------------------------------ccccccccceeee-ecCCCCEEEEeccccceeee
Confidence 1348999999999 99999999999999998886
No 143
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=4.2e-18 Score=195.83 Aligned_cols=247 Identities=14% Similarity=0.188 Sum_probs=202.6
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec---CCCEEEEEeCCCeEEEEE
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR---HSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp---dg~~Lasgs~Dg~I~vwd 911 (1249)
+-.|.+++++|+|++||+|..-|+++|||+...+. ......|...|.|+.|+. ..+.||+|+.|..|+|||
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhh------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 45799999999999999999999999999998773 457788999999999986 347899999999999999
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeee---cCCCCCc
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLK---AIPEEGY 988 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~---~~~h~~~ 988 (1249)
+. .. ...+.++++|...|+++. |.-.+- ...+++++.|..|.+--.+.......+. ....+..
T Consensus 533 v~---------rn---y~l~qtld~HSssITsvK-Fa~~gl-n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 533 VK---------RN---YDLVQTLDGHSSSITSVK-FACNGL-NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred cc---------cc---cchhhhhcccccceeEEE-EeecCC-ceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 98 12 235778899999999999 766632 2678899999877654333211111111 1123568
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC--CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 989 VSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS--QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 989 I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~--~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
++.++++|...++++++.|..|+|||+..++..+.|+.. |.+..-.+.. .|.|. |+++.+.|.++.++
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l-DPSgi---------Y~atScsdktl~~~ 668 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL-DPSGI---------YLATSCSDKTLCFV 668 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE-CCCcc---------EEEEeecCCceEEE
Confidence 999999999999999999999999999999999998753 5566777888 99988 99999999999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|+.+|+|+....+|. .-|+.+.|.+|. .|++.
T Consensus 669 Df~sgEcvA~m~GHs-----------------------------------------------E~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHS-----------------------------------------------EAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred EeccchhhhhhcCcc-----------------------------------------------hheeeeeecccchhheee
Confidence 999999987766433 278999999999 99999
Q ss_pred eCCCcEEEEeCCC
Q 000861 1146 GTDLKIRRWDHCS 1158 (1249)
Q Consensus 1146 s~Dg~IriWDl~~ 1158 (1249)
+.||.|.+|.+..
T Consensus 702 sgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 702 SGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEECch
Confidence 9999999999864
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.3e-18 Score=188.31 Aligned_cols=220 Identities=13% Similarity=0.206 Sum_probs=182.6
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
-.++|+|++-+|+|.|++.|+..|.+.+|.+.+|.. ...+.+|-..|+|+.|+.||.+|++||.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 467899999999999999998999999999999983 44567888899999999999999999999999999986
Q ss_pred ccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEE
Q 000861 914 HISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLV 993 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~ 993 (1249)
..-.. ..-....+++.+..|.-+|+++. ..+.+. ...+++++.|.++++||+..+..+.++.. ...+.+++
T Consensus 154 ~lv~a----~~~~~~~p~~~f~~HtlsITDl~-ig~Gg~-~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~ 224 (476)
T KOG0646|consen 154 DLVSA----DNDHSVKPLHIFSDHTLSITDLQ-IGSGGT-NARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVA 224 (476)
T ss_pred eeccc----ccCCCccceeeeccCcceeEEEE-ecCCCc-cceEEEecCCceEEEEEeccceeeEEEec---CCcceeEE
Confidence 21100 11113456888999999999998 665532 46999999999999999999988877765 67899999
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCC----------------cccccccCCCC--CeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 994 TGPCGNWFVSGSSRGVLTLWDLRFLV----------------PVNSWQYSQVC--PIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 994 ~spdg~~L~sgs~dG~I~lWDlr~~~----------------~l~s~~~~~~~--~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
++|.++.+++|+.+|.|.+.++.... .+..+. +|.+ .|+|+++ +-||. +|+
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLai-s~Dgt---------lLl 293 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAI-STDGT---------LLL 293 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEE-ecCcc---------EEE
Confidence 99999999999999999998874321 122222 4655 9999999 88988 999
Q ss_pred EEECCCeEEEEECCCCceeEEEec
Q 000861 1056 VAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1056 t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
+|+.||.+.|||+.+.+|++++..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhh
Confidence 999999999999999999888774
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=185.56 Aligned_cols=283 Identities=12% Similarity=0.132 Sum_probs=214.4
Q ss_pred CCCCCCCCCCCCccccccCCCCCccCCCC---cEEEEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCccccc
Q 000861 797 DASSPADLTGLPSFVRTSSIPDSGWRPRG---ILVAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDIS 872 (1249)
Q Consensus 797 ~~~~~~s~~G~~~~~~s~~~~~~~W~~~G---~lv~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~ 872 (1249)
|.++.|+|.-+.+..++.+...+++..+| ..++.+.--..+|.+++|+|+|. .+++++.......||+.+.+...
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k- 294 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK- 294 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc-
Confidence 44677888888777777788888888555 46777776788999999999998 89999999999999998876321
Q ss_pred cceeeEeeccC-CceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCC
Q 000861 873 FRSRLTYHLEG-SRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951 (1249)
Q Consensus 873 ~~~~~t~~~h~-~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~ 951 (1249)
.....++. ..+.....++++++|+.++..|.|++.... ++++ +..++ -.|.|..+. |+.+
T Consensus 295 ---~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-----T~el--------i~s~K-ieG~v~~~~-fsSd- 355 (514)
T KOG2055|consen 295 ---LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-----TKEL--------ITSFK-IEGVVSDFT-FSSD- 355 (514)
T ss_pred ---ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-----hhhh--------hheee-eccEEeeEE-EecC-
Confidence 11122222 357778889999999999999999998876 2322 22332 357788888 9888
Q ss_pred CCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC------CCcccccc
Q 000861 952 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF------LVPVNSWQ 1025 (1249)
Q Consensus 952 ~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~------~~~l~s~~ 1025 (1249)
++.|++++.+|.|.+||++.+.+++.+.-.+ .-.-+++|.++++.||++|+..|.|.|||..+ .++++.+.
T Consensus 356 --sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 356 --SKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred --CcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 6789999999999999999999888886422 22346788889999999999999999999753 45666654
Q ss_pred cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC--CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCC
Q 000861 1026 YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG--CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSN 1103 (1249)
Q Consensus 1026 ~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~--Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~ 1103 (1249)
. -...|++|.| +|+.. .++.|+. .+.+++-.+.+......+..
T Consensus 433 N-Ltt~Itsl~F-n~d~q---------iLAiaS~~~knalrLVHvPS~TVFsNfP~------------------------ 477 (514)
T KOG2055|consen 433 N-LTTAITSLQF-NHDAQ---------ILAIASRVKKNALRLVHVPSCTVFSNFPT------------------------ 477 (514)
T ss_pred h-hheeeeeeee-Ccchh---------hhhhhhhccccceEEEeccceeeeccCCC------------------------
Confidence 2 4568999999 99998 7777765 56788887765432221111
Q ss_pred CCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1104 PKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1104 ~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
.......|+|++|+|.| +++.|..+|++.+|.+.
T Consensus 478 --------------------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 --------------------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --------------------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 01122379999999977 99999999999999875
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=191.16 Aligned_cols=268 Identities=16% Similarity=0.238 Sum_probs=189.0
Q ss_pred EEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC-CCEEEEEeCCCe
Q 000861 828 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH-SAQVVVGACDGI 906 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~ 906 (1249)
+.....|.++|..+.|.|....|++++.|.++++||+...+... ...+.+|.+.|.++||.|. ...|++|+.||.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec----ceeecccccccchhhhccCCCcceeeccCCCc
Confidence 44556799999999999966799999999999999999876432 2358899999999999995 468889999999
Q ss_pred EEEEEccccccCC-Cc----c-ccccC--------ccceeeecCCCCcEEE---EEEecCCCCCccEEEEEEC-CCeEEE
Q 000861 907 IHMFSVDHISRGL-GN----V-EKYSG--------ISDIKKKDTKEGAIVT---LVNYNTDNCASHMFMYSTQ-NCGIHL 968 (1249)
Q Consensus 907 I~vwdv~~~~~~~-g~----~-~~~~~--------~~~i~~l~~h~~~V~~---l~~fs~d~~~g~~L~sgs~-dg~I~i 968 (1249)
|.|||+....... .+ . ..+.+ .+.++....+.+.+.+ +. +..| ...|++++. |+.|++
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv-~fkD---e~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV-LFKD---ESTLASAGAADSTIKV 244 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE-EEec---cceeeeccCCCcceEE
Confidence 9999998322100 00 0 11111 1123445555555554 44 3445 458888877 999999
Q ss_pred EEcCCCccceeee------cCCC---CCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC--cccccccCCCCCee-EEE
Q 000861 969 WDTRSNSNTWTLK------AIPE---EGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV--PVNSWQYSQVCPIE-KMC 1036 (1249)
Q Consensus 969 wDlrt~~~~~~l~------~~~h---~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~--~l~s~~~~~~~~I~-~l~ 1036 (1249)
||+|........+ .+-| .-.+++++.+..|.+|.+.+.|+.|++||++... ++..+.......++ .-.
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence 9999876543332 2223 3468899999999999988889999999998533 34433321111111 112
Q ss_pred EEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccc
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKY 1116 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~ 1116 (1249)
. +|++. ++++|+.|...++|.+.+.+.--.+
T Consensus 325 l-Spd~~---------~l~SgSsd~~ayiw~vs~~e~~~~~--------------------------------------- 355 (720)
T KOG0321|consen 325 L-SPDDC---------SLLSGSSDEQAYIWVVSSPEAPPAL--------------------------------------- 355 (720)
T ss_pred c-CCCCc---------eEeccCCCcceeeeeecCccCChhh---------------------------------------
Confidence 3 78887 9999999999999998765321111
Q ss_pred cccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCC
Q 000861 1117 RVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1117 ~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~ 1159 (1249)
..+|...|++++|.|.. -++|+++|.++++|++.++
T Consensus 356 -------l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 356 -------LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -------hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 13444589999998866 7888899999999999654
No 147
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.3e-15 Score=175.93 Aligned_cols=305 Identities=15% Similarity=0.185 Sum_probs=200.1
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec--CCCEEEEEeCCCeEEEEEcc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR--HSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp--dg~~Lasgs~Dg~I~vwdv~ 913 (1249)
.+-..+.|+|=...++++.+.-.|+|||.+.++....|.. -......|+.+++.. |...+++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n---~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDN---GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccC---CCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3556678888888899988888999999998874222210 011234799999986 45689999999999999864
Q ss_pred ccccCCCcc-ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 914 HISRGLGNV-EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 914 ~~~~~~g~~-~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
.......++ ..+.+...... +..+ ...+..|... ..+|++++.-..|+|||.........+.. +....|+++
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~--~~r~-~~~v~dWqQ~---~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaL 1214 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLP--GARG-TGLVVDWQQQ---SGHLLVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTAL 1214 (1387)
T ss_pred ccccCCceeEEeeccccccCc--cCCC-CCeeeehhhh---CCeEEecCCeeEEEEEecccceeEeeccc-CCCccceee
Confidence 111011111 22222211111 1111 1133336665 23566666688999999998877766653 345678877
Q ss_pred EEcC-CCCEEEEEecCCcEEEEeCCCCC---cccccccCCCCC--eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 993 VTGP-CGNWFVSGSSRGVLTLWDLRFLV---PVNSWQYSQVCP--IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 993 ~~sp-dg~~L~sgs~dG~I~lWDlr~~~---~l~s~~~~~~~~--I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
.-+- .|+.+++|..||.|++||.|... .+..++ .|... |..+.+ .+.|- ..+++|+.+|.|++|
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~sl-q~~G~--------~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSL-QRQGL--------GELVSGSQDGDIQLL 1284 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEe-ecCCC--------cceeeeccCCeEEEE
Confidence 7654 46999999999999999998643 344444 46655 999998 77665 259999999999999
Q ss_pred ECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEE
Q 000861 1067 NAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTG 1145 (1249)
Q Consensus 1067 Dl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tg 1145 (1249)
|++.. ....+.....+ |+. ....+++..+++. .+++|
T Consensus 1285 DlR~~-~~e~~~~iv~~-----------------------------------~~y------Gs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1285 DLRMS-SKETFLTIVAH-----------------------------------WEY------GSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred ecccC-cccccceeeec-----------------------------------ccc------CccceeeeeccCCCeeeec
Confidence 99864 22222211110 000 0037899999888 88888
Q ss_pred eCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeE
Q 000861 1146 GTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILS 1225 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~ 1225 (1249)
+. +.|+||++.. +....+.... .+ .......+.|
T Consensus 1323 s~-q~ikIy~~~G-~~l~~~k~n~--------~F------------------------------------~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSG-EQLNIIKYNP--------GF------------------------------------MGQRIGSVSC 1356 (1387)
T ss_pred Cc-ceEEEEecCh-hhhcccccCc--------cc------------------------------------ccCcCCCcce
Confidence 87 9999999963 3333322100 00 0012345689
Q ss_pred EEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1226 LGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1226 la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
++ |+|-.-+||.|+.|.+|.||.
T Consensus 1357 L~-FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1357 LA-FHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ee-ecchhHhhhhccCCceEEEee
Confidence 99 999988999999999999983
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=3.6e-18 Score=189.97 Aligned_cols=256 Identities=12% Similarity=0.128 Sum_probs=207.0
Q ss_pred CCCccCCC----CcEEEEeccc--cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEE
Q 000861 817 PDSGWRPR----GILVAHLQEH--CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890 (1249)
Q Consensus 817 ~~~~W~~~----G~lv~~L~~H--~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~ 890 (1249)
-+++|+.+ ..++.+|.-- ..-|.++...|||+.|++|+.-.++.|||+......+ ...+....-...+++
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri----kaeltssapaCyALa 516 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI----KAELTSSAPACYALA 516 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch----hhhcCCcchhhhhhh
Confidence 36899943 3577777653 3579999999999999999999999999998765321 112223334578899
Q ss_pred EecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEE
Q 000861 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWD 970 (1249)
Q Consensus 891 fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwD 970 (1249)
.+||.+..++++.||.|.|||+. .+ ..++.+++|.+.+.|+. .+++ |..|.+|+-|++|+.||
T Consensus 517 ~spDakvcFsccsdGnI~vwDLh------nq-------~~VrqfqGhtDGascId-is~d---GtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLH------NQ-------TLVRQFQGHTDGASCID-ISKD---GTKLWTGGLDNTVRCWD 579 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcc------cc-------eeeecccCCCCCceeEE-ecCC---CceeecCCCccceeehh
Confidence 99999999999999999999998 22 25899999999999998 9999 78999999999999999
Q ss_pred cCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCC
Q 000861 971 TRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTA 1050 (1249)
Q Consensus 971 lrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~ 1050 (1249)
+|+++.+....+ .+.|.++.++|++.|+++|-.++.+.+-....... ..+ +-|+.-|.++.| .+.|+
T Consensus 580 lregrqlqqhdF---~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql-hlheScVLSlKF-a~cGk------- 646 (705)
T KOG0639|consen 580 LREGRQLQQHDF---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL-HLHESCVLSLKF-AYCGK------- 646 (705)
T ss_pred hhhhhhhhhhhh---hhhheecccCCCccceeeecccCcEEEEecCCccc-eee-cccccEEEEEEe-cccCc-------
Confidence 999988766554 67899999999999999999999988877643332 222 348889999999 99998
Q ss_pred CCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCC
Q 000861 1051 RPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLG 1130 (1249)
Q Consensus 1051 ~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~ 1130 (1249)
++++.+.|+-+..|...-|..+-... ....
T Consensus 647 --wfvStGkDnlLnawrtPyGasiFqsk------------------------------------------------E~Ss 676 (705)
T KOG0639|consen 647 --WFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------ESSS 676 (705)
T ss_pred --eeeecCchhhhhhccCccccceeecc------------------------------------------------ccCc
Confidence 99999999999999887665432222 1127
Q ss_pred eEEEeecCCC-eEEEEeCCCcEEEEeC
Q 000861 1131 IRSLLPLPGG-DLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1131 V~sl~~spdg-~L~tgs~Dg~IriWDl 1156 (1249)
|.++.++.|. +++||+.|..-.+|.+
T Consensus 677 VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 677 VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeeeccCceEEEecCCCcceEEEEE
Confidence 8899999888 9999999998888865
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.6e-17 Score=193.32 Aligned_cols=249 Identities=14% Similarity=0.172 Sum_probs=199.8
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE
Q 000861 881 LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg 960 (1249)
+|..+.+.++|.|+|..|++++.||.|++|+...... .-..+..+...|.+++ .. +..+++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------~P~ti~~~g~~v~~ia-~~-----s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------EPETIDISGELVSSIA-CY-----SNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------CCchhhccCceeEEEe-ec-----ccceEEe
Confidence 5777899999999999999999999999999872111 1122222556677777 32 2389999
Q ss_pred ECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcC
Q 000861 961 TQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 961 s~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
+.+++|.+|....++.-..+. .-.-++++++++.+|.+++.|+.|-.|++-++.+......+. +|.++|.++.| +|
T Consensus 73 s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~-~p 148 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSY-DP 148 (933)
T ss_pred eccceEEEeeCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeE-cC
Confidence 999999999998887643332 135588999999999999999999999999998888888765 69999999999 99
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDE 1120 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~ 1120 (1249)
.+. +|++.+.||.|++||+.++.+...+.......+.
T Consensus 149 ~~~---------fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~---------------------------------- 185 (933)
T KOG1274|consen 149 KGN---------FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF---------------------------------- 185 (933)
T ss_pred CCC---------EEEEEecCceEEEEEcccchhhhhcccCCccccc----------------------------------
Confidence 998 9999999999999999999887777643221110
Q ss_pred cCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCcc
Q 000861 1121 LNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLT 1199 (1249)
Q Consensus 1121 ~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~ 1199 (1249)
.....+..++|+|+| .++..+.|+.|++|+..+.+..+.+....
T Consensus 186 -----~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~------------------------------ 230 (933)
T KOG1274|consen 186 -----ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL------------------------------ 230 (933)
T ss_pred -----cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc------------------------------
Confidence 001256788999997 88888899999999999998877775332
Q ss_pred chhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1200 SKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1200 ~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|...+.+++ |+|+|+|||+++-||.|-|||
T Consensus 231 -------------------~ss~~~~~~-wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 231 -------------------SSSKFSDLQ-WSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred -------------------cccceEEEE-EcCCCcEEeeeccCCcEEEEe
Confidence 344488898 999999999999999999997
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.6e-18 Score=207.40 Aligned_cols=290 Identities=17% Similarity=0.242 Sum_probs=208.0
Q ss_pred EEEEcCCCC-EEEEE----------ECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE----EEEEeCC
Q 000861 840 EIAISHDHS-FFVSA----------SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ----VVVGACD 904 (1249)
Q Consensus 840 ~la~spdg~-~laTg----------s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~----Lasgs~D 904 (1249)
.++|+|++. ++|+| |.+.++.||.+.-.......+....+. -..+...++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 456777765 44433 446677777654332211111122222 2346889999997765 8888999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
|.|.+||..... .-.....+.+...|.|.|..+. |++.. +++|++|+.+|.|.|||+...+...+.....
T Consensus 90 G~I~ly~p~~~~-------~~~~~~~la~~~~h~G~V~gLD-fN~~q--~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 90 GNIVLYDPASII-------ANASEEVLATKSKHTGPVLGLD-FNPFQ--GNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred CceEEecchhhc-------cCcchHHHhhhcccCCceeeee-ccccC--CceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 999999998210 1112235677788999999998 99985 5599999999999999999866655553333
Q ss_pred CCCceEEEEEcCC-CCEEEEEecCCcEEEEeCCCCCcccccccCC-CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC-
Q 000861 985 EEGYVSSLVTGPC-GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQ-VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN- 1061 (1249)
Q Consensus 985 h~~~I~sl~~spd-g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~-~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg- 1061 (1249)
..+.|.+++|+.. .+.|++|+.+|.+.|||+|..+++-.+.... ...+..+.| ||+.. ..++++++|.
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W-hP~~a--------Tql~~As~dd~ 230 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW-HPDHA--------TQLLVASGDDS 230 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee-CCCCc--------eeeeeecCCCC
Confidence 5678999999985 4788999999999999999988877665422 245788999 99986 4677777764
Q ss_pred --eEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecC
Q 000861 1062 --EVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLP 1138 (1249)
Q Consensus 1062 --~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~sp 1138 (1249)
.|.+||++.-. ..+++ .+|..+|.++.|++
T Consensus 231 ~PviqlWDlR~assP~k~~-----------------------------------------------~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKIL-----------------------------------------------EGHQRGILSLSWCP 263 (1049)
T ss_pred CceeEeecccccCCchhhh-----------------------------------------------cccccceeeeccCC
Confidence 59999987432 22222 34555999999998
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhccccc
Q 000861 1139 GG--DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSA 1216 (1249)
Q Consensus 1139 dg--~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l 1216 (1249)
.+ +++++|.|++|.+|+.++++.+..+..
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~------------------------------------------------- 294 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPA------------------------------------------------- 294 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCC-------------------------------------------------
Confidence 77 999999999999999999887655531
Q ss_pred CCcccceeEEEeeecCCC-EEEEEeCCCeEEEc
Q 000861 1217 GCHRDSILSLGSVKLNQR-LLISSSRDGAIKVW 1248 (1249)
Q Consensus 1217 ~~H~d~I~~la~~s~dg~-~LaSgs~DG~IkVW 1248 (1249)
..+.+.++. |.|... .++.++-||.|-|+
T Consensus 295 --~~nW~fdv~-w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 295 --QGNWCFDVQ-WCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred --CCcceeeee-ecCCCcchhhhheeccceeee
Confidence 245677777 666654 66677778888775
No 151
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=174.46 Aligned_cols=327 Identities=15% Similarity=0.205 Sum_probs=220.7
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEee-ccCCceEEEEEecCCCEEEEEeCCC
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH-LEGSRALCTMMLRHSAQVVVGACDG 905 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~-~h~~~V~sl~fspdg~~Lasgs~Dg 905 (1249)
+.+-+.+|.++|++|.|+.++++||+|++|..+++|++...-...+.++..... .|.+.|.|++|...+..+.+|+.+|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 445688999999999999999999999999999999987654333333333332 3557899999999999999999999
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIP 984 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~ 984 (1249)
+|...|++ ..+ .+ .+..-....+.|..+. .+|. .+.+++.+.++.|.+||.|.... ...+-...
T Consensus 128 ~VI~HDiE-t~q---si-------~V~~~~~~~~~VY~m~-~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 128 TVIKHDIE-TKQ---SI-------YVANENNNRGDVYHMD-QHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred eeEeeecc-cce---ee-------eeecccCcccceeecc-cCCC---CceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999998 111 11 1122222456888888 7887 57999999999999999997663 22222222
Q ss_pred CCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCC-ccccccc--C--C-CCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 985 EEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLV-PVNSWQY--S--Q-VCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 985 h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~-~l~s~~~--~--~-~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
......++.|+|.. .+|++.+..|.+-+||.|... ++..... + . ...-..+.| +|.|+ .+++.
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~-~~~G~---------Q~msi 262 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW-SPSGN---------QFMSI 262 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheee-CCCCC---------eehhh
Confidence 34567888999965 788889999999999998643 2222110 1 1 111245677 88887 56555
Q ss_pred ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeec
Q 000861 1058 AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPL 1137 (1249)
Q Consensus 1058 s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 1137 (1249)
-....-.+||+-+.+|. +++.. |+. + .......+.+++|.
T Consensus 263 RR~~~P~~~D~~S~R~~-V~k~D--~N~---------------------~----------------GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCF-VLKSD--HNP---------------------N----------------GYCNIKTIKSMTFI 302 (609)
T ss_pred hccCCCEEeeeecccce-eEecc--CCC---------------------C----------------cceeeeeeeeeeee
Confidence 55555567777654442 33311 010 0 00111256778887
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCccEEE--eCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccc
Q 000861 1138 PGGDLLTGGTDLKIRRWDHCSPGRSYCI--CGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDS 1215 (1249)
Q Consensus 1138 pdg~L~tgs~Dg~IriWDl~~~~~~~~l--~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1249)
.|..+++|+.|-.|++|.+......+-+ .|+.... .............
T Consensus 303 ~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~------------------------------~~~~~~i~~~~~V 352 (609)
T KOG4227|consen 303 DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE------------------------------MPSEIFIEKELTV 352 (609)
T ss_pred cceeeeccCcccceEEEecCCCccccCccccCcchhh------------------------------CchhheecceeEE
Confidence 7778999999999999999754432221 1111000 0000011112335
Q ss_pred cCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1216 AGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1216 l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
++||...++.+. |++...+|+|+|-...+|+|-
T Consensus 353 LrGHRSv~NQVR-F~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 353 LRGHRSVPNQVR-FSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred Eeccccccccee-ecCCcceEeccchhhheeccc
Confidence 779999999999 999999999999999999993
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-16 Score=176.83 Aligned_cols=266 Identities=14% Similarity=0.200 Sum_probs=197.4
Q ss_pred CCCCccCC-CCcEEEEecccc--CceeEEEEcCCCCEEEEE--ECCCcEEEEECCCCccccccceeeEeeccCCceEEEE
Q 000861 816 IPDSGWRP-RGILVAHLQEHC--SAVNEIAISHDHSFFVSA--SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 890 (1249)
Q Consensus 816 ~~~~~W~~-~G~lv~~L~~H~--~~V~~la~spdg~~laTg--s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~ 890 (1249)
...++|+. .-...-.+..|+ ..|.++.|+.... ++++ +.|..+++|.-...... .. + +-......-.|++
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~--Vp-~-~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPE--VP-R-VRKLTGDNAFCVA 86 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCc--cc-e-eeccccchHHHHh
Confidence 56788983 222222222222 2499999987653 5544 56888999975443211 11 1 1111222344555
Q ss_pred EecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEE
Q 000861 891 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWD 970 (1249)
Q Consensus 891 fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwD 970 (1249)
......++++|+..+.|+|||+. .++ ..+.++.|...|+++. |+.. ..+|++++..|.|.+..
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~------~kl-------~hr~lkdh~stvt~v~-YN~~---DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLR------AKL-------IHRFLKDHQSTVTYVD-YNNT---DEYIASVSDGGDIIIHG 149 (673)
T ss_pred hhhcceeeeccCcCceeeehhhH------HHH-------HhhhccCCcceeEEEE-ecCC---cceeEEeccCCcEEEEe
Confidence 54555899999999999999998 222 4677888999999998 8776 56999999999999999
Q ss_pred cCCCccceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCC
Q 000861 971 TRSNSNTWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTT 1049 (1249)
Q Consensus 971 lrt~~~~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~ 1049 (1249)
+.++....++.. +....|+-+.|++.. .+|.+++.+|.|.+||+....++..|...|..|...+|| +|...
T Consensus 150 ~~t~~~tt~f~~-~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf-spsne------ 221 (673)
T KOG4378|consen 150 TKTKQKTTTFTI-DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF-SPSNE------ 221 (673)
T ss_pred cccCccccceec-CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee-cCCcc------
Confidence 999988877764 334567789999976 456678899999999999999999999899999999999 88765
Q ss_pred CCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCC
Q 000861 1050 ARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLL 1129 (1249)
Q Consensus 1050 ~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~ 1129 (1249)
.++++.+.|..|.+||....+....+.. + .
T Consensus 222 --~l~vsVG~Dkki~~yD~~s~~s~~~l~y--------------~----------------------------------~ 251 (673)
T KOG4378|consen 222 --ALLVSVGYDKKINIYDIRSQASTDRLTY--------------S----------------------------------H 251 (673)
T ss_pred --ceEEEecccceEEEeecccccccceeee--------------c----------------------------------C
Confidence 4778888999999999986554444331 1 1
Q ss_pred CeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1130 GIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1130 ~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
+..+++|.++| +|++|...|.|..||+...+.
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 67789999999 999999999999999986544
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=3.2e-16 Score=166.96 Aligned_cols=252 Identities=18% Similarity=0.234 Sum_probs=175.9
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCc------cccccceeeEeec-cCCceEEEEEe-------cCCCEEEEEeCC
Q 000861 839 NEIAISHDHSFFVSASDDSTVKVWDSRKLE------KDISFRSRLTYHL-EGSRALCTMML-------RHSAQVVVGACD 904 (1249)
Q Consensus 839 ~~la~spdg~~laTgs~DgtVkIWD~~~~~------~~~~~~~~~t~~~-h~~~V~sl~fs-------pdg~~Lasgs~D 904 (1249)
..+.|+|||..|.+-+.|..+.+|++.... ....++...+++- .+..|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 467899999999999999999999875311 1111122223333 23468888886 567899999999
Q ss_pred CeEEEEEccccccCCCcc-ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEc-CCCccceeeec
Q 000861 905 GIIHMFSVDHISRGLGNV-EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDT-RSNSNTWTLKA 982 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~-~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDl-rt~~~~~~l~~ 982 (1249)
.-|++||.- +|++ ..|.+...+..+ ....+++ |+|| |..|++| ....|+++|+ |.|+.......
T Consensus 133 ~PIh~wdaf-----tG~lraSy~~ydh~de~----taAhsL~-Fs~D---GeqlfaG-ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAF-----TGKLRASYRAYDHQDEY----TAAHSLQ-FSPD---GEQLFAG-YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred Cceeeeecc-----ccccccchhhhhhHHhh----hhheeEE-ecCC---CCeEeec-ccceEEEeeccCCCCCCcchhh
Confidence 999999987 3554 233321111111 2345777 9999 6677655 5789999999 77765333322
Q ss_pred -----CCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEE
Q 000861 983 -----IPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYV 1056 (1249)
Q Consensus 983 -----~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t 1056 (1249)
.+..+.|.+++|+|-. ..+++|+....+-||.-..+.++..+. +|.+.|+.++| .++|+ .+++
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~-~edGn---------~lfs 267 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQW-CEDGN---------KLFS 267 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEe-ccCcC---------eecc
Confidence 2347889999999954 589999999998888887888888765 79999999999 99998 7888
Q ss_pred EEC-CCeEEEEECCCCc-eeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEE
Q 000861 1057 AAG-CNEVSLWNAENGS-CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSL 1134 (1249)
Q Consensus 1057 ~s~-Dg~I~vWDl~tg~-~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl 1134 (1249)
|+. |..|-.||++... .+..+..+.... ...| -.
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~T-------------------------------------------NQRI-~F 303 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDT-------------------------------------------NQRI-LF 303 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCc-------------------------------------------cceE-EE
Confidence 876 7789999998532 222222221100 0011 22
Q ss_pred eecCCC-eEEEEeCCCcEEEEeCCCC
Q 000861 1135 LPLPGG-DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1135 ~~spdg-~L~tgs~Dg~IriWDl~~~ 1159 (1249)
...|+| +|++|+.||.|++||+++.
T Consensus 304 Dld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 304 DLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ecCCCCceeeccCCCccEEEEecCCC
Confidence 334777 9999999999999999874
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=167.67 Aligned_cols=293 Identities=14% Similarity=0.137 Sum_probs=207.2
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccccccCCCCCccCCCCcEEEEeccc--------cCceeEEEEcCCCCE-EEEE
Q 000861 783 GTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQEH--------CSAVNEIAISHDHSF-FVSA 853 (1249)
Q Consensus 783 g~~~~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~~~G~lv~~L~~H--------~~~V~~la~spdg~~-laTg 853 (1249)
-....+++|...+. .+.|+.||..+++.+.|.++++|+.+. ...++| -+--+.++|+||.+- ++++
T Consensus 77 l~~~~LKgH~~~vt--~~~FsSdGK~lat~~~Dr~Ir~w~~~D---F~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVT--DVAFSSDGKKLATISGDRSIRLWDVRD---FENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred hhhhhhhccCCcee--eeEEcCCCceeEEEeCCceEEEEecch---hhhhhhhHhhccccCCCceEEEECCCcceEEEEE
Confidence 34556778887776 678999999999988888999999432 122233 235678999999874 4455
Q ss_pred ECCCcEEEEECCCCccc-ccccee----eEe-eccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccC
Q 000861 854 SDDSTVKVWDSRKLEKD-ISFRSR----LTY-HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSG 927 (1249)
Q Consensus 854 s~DgtVkIWD~~~~~~~-~~~~~~----~t~-~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~ 927 (1249)
-...++++|.....+.. .++... +.+ .-|.-.|..+-...++.+|++++.|..|.+|++. |++
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk------Gq~----- 220 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK------GQL----- 220 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC------Cce-----
Confidence 55668999987654321 111100 011 1244566667777788999999999999999998 543
Q ss_pred ccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC---C---ccceeeecCCCCCceEEEEEcCCCCEE
Q 000861 928 ISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS---N---SNTWTLKAIPEEGYVSSLVTGPCGNWF 1001 (1249)
Q Consensus 928 ~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt---~---~~~~~l~~~~h~~~I~sl~~spdg~~L 1001 (1249)
+..++.....-...+ .+|+ |+++++++....|++|.+-- | +....++..+|...|..++|+++...+
T Consensus 221 ---L~~idtnq~~n~~aa-vSP~---GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 221 ---LQSIDTNQSSNYDAA-VSPD---GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA 293 (420)
T ss_pred ---eeeecccccccccee-eCCC---CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee
Confidence 444444444444455 8999 89999999999999999742 2 223445667899999999999999999
Q ss_pred EEEecCCcEEEEeCCC----C---Ccccccc---cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC
Q 000861 1002 VSGSSRGVLTLWDLRF----L---VPVNSWQ---YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG 1071 (1249)
Q Consensus 1002 ~sgs~dG~I~lWDlr~----~---~~l~s~~---~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg 1071 (1249)
++.+.||.+++||..- + ..++... +..++.-.++.. +|.|. +++.+....++++..++|
T Consensus 294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l-sP~g~----------~lA~s~gs~l~~~~se~g 362 (420)
T KOG2096|consen 294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL-SPSGD----------SLAVSFGSDLKVFASEDG 362 (420)
T ss_pred EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe-CCCCc----------EEEeecCCceEEEEcccC
Confidence 9999999999999742 1 2222221 112333448999 99998 566666778999999988
Q ss_pred ceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCc
Q 000861 1072 SCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLK 1150 (1249)
Q Consensus 1072 ~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~ 1150 (1249)
+....++. .|...|.+++|+++| +++|+| |+.
T Consensus 363 ~~~~~~e~----------------------------------------------~h~~~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 363 KDYPELED----------------------------------------------IHSTTISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred ccchhHHH----------------------------------------------hhcCceeeEEecCCCcEEeeec-cee
Confidence 76555442 233389999999999 887776 788
Q ss_pred EEEEeC
Q 000861 1151 IRRWDH 1156 (1249)
Q Consensus 1151 IriWDl 1156 (1249)
+|+..-
T Consensus 396 vrv~~n 401 (420)
T KOG2096|consen 396 VRVIRN 401 (420)
T ss_pred eeeecC
Confidence 888763
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.6e-17 Score=202.75 Aligned_cols=254 Identities=19% Similarity=0.232 Sum_probs=195.3
Q ss_pred CceeEEEEcCCCCE----EEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC-CCEEEEEeCCCeEEEE
Q 000861 836 SAVNEIAISHDHSF----FVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH-SAQVVVGACDGIIHMF 910 (1249)
Q Consensus 836 ~~V~~la~spdg~~----laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~I~vw 910 (1249)
...+.++|.+.|.. +|.|..||.|.+||..............++..|.+.|..+.|.+. ++.||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999887654 899999999999999875333444456678889999999999995 4599999999999999
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceE
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS 990 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~ 990 (1249)
|+..... .++.. -....+.|.++. |+... .++|++++.+|.+.|||+|..+.+-.+...+....+.
T Consensus 145 Dlnn~~t------P~~~~-----~~~~~~eI~~ls-WNrkv--qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 145 DLNKPET------PFTPG-----SQAPPSEIKCLS-WNRKV--SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred ccCCcCC------CCCCC-----CCCCcccceEec-cchhh--hHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 9982111 11100 111356788998 88764 5689999999999999999988776665433345688
Q ss_pred EEEEcCCC-CEEEEEecCC---cEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEE
Q 000861 991 SLVTGPCG-NWFVSGSSRG---VLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSL 1065 (1249)
Q Consensus 991 sl~~spdg-~~L~sgs~dG---~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~v 1065 (1249)
.+.|+|++ ..+++++.|. .|.+||+|+- .+++.++ +|...|.++.| .+.+. .++++++.|+.|.+
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsW-c~~D~--------~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSW-CPQDP--------RLLLSSGKDNRIIC 280 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeecc-CCCCc--------hhhhcccCCCCeeE
Confidence 99999987 5666666653 5999999975 4566664 69999999999 55442 38999999999999
Q ss_pred EECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEE
Q 000861 1066 WNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLL 1143 (1249)
Q Consensus 1066 WDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~ 1143 (1249)
|+.++|+.+..+.... .++..+.|.|.. .++
T Consensus 281 wN~~tgEvl~~~p~~~-----------------------------------------------nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQG-----------------------------------------------NWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred ecCCCceEeeecCCCC-----------------------------------------------cceeeeeecCCCcchhh
Confidence 9999998776665311 177888888877 888
Q ss_pred EEeCCCcEEEEeCCCCC
Q 000861 1144 TGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1144 tgs~Dg~IriWDl~~~~ 1160 (1249)
+++-||.|-|+.+....
T Consensus 314 ~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 314 AASFDGKISIYSLQGTD 330 (1049)
T ss_pred hheeccceeeeeeecCC
Confidence 89999999999987654
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.5e-17 Score=186.19 Aligned_cols=276 Identities=17% Similarity=0.300 Sum_probs=205.3
Q ss_pred CccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc--cccccceeeEeeccCCceEEEEEecCCC
Q 000861 819 SGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE--KDISFRSRLTYHLEGSRALCTMMLRHSA 896 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~--~~~~~~~~~t~~~h~~~V~sl~fspdg~ 896 (1249)
+-|++. .++..|.+.|..++|+|....|++|+.||++++|++.... ....+++..++.+|.++|.|+++.++++
T Consensus 282 k~w~ik----~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 282 KKWNIK----FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred eeccee----eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce
Confidence 447764 2788899999999999999999999999999999994422 2234568899999999999999999999
Q ss_pred EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 897 QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 897 ~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
.+.+|+-||+|+.|++. ...... ..|........+.+|.+.++.++ +++. ...|++++.||+++.|+......
T Consensus 358 ~~ysgg~Dg~I~~w~~p-~n~dp~--ds~dp~vl~~~l~Ghtdavw~l~-~s~~---~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLP-PNQDPD--DSYDPSVLSGTLLGHTDAVWLLA-LSST---KDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred EEEeeccCceeeeeccC-CCCCcc--cccCcchhccceeccccceeeee-eccc---ccceeeecCCceEEeeccCCcCc
Confidence 99999999999999876 211100 22222234556788999999998 8887 56899999999999999876665
Q ss_pred ceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccC------CCCCeeEEEEEcCCCCCcccCC
Q 000861 977 TWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYS------QVCPIEKMCLFVPPPNAAVSTT 1049 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~------~~~~I~~l~~~sp~g~~~~~~~ 1049 (1249)
.++..+...+...++.+-... ...++...-|.-.++|+.....+..+... ....+..+.+ +|.+.
T Consensus 431 -~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs-~~~~~------ 502 (577)
T KOG0642|consen 431 -CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS-HPTAD------ 502 (577)
T ss_pred -cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe-cCCCC------
Confidence 455545566777777775544 23333333444445555444443333221 1134667777 88776
Q ss_pred CCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCC
Q 000861 1050 ARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLL 1129 (1249)
Q Consensus 1050 ~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~ 1129 (1249)
+.+++..|+.|+++|..++..+..... |..
T Consensus 503 ---~~~~~hed~~Ir~~dn~~~~~l~s~~a-----------------------------------------------~~~ 532 (577)
T KOG0642|consen 503 ---ITFTAHEDRSIRFFDNKTGKILHSMVA-----------------------------------------------HKD 532 (577)
T ss_pred ---eeEecccCCceecccccccccchheee-----------------------------------------------ccc
Confidence 899999999999999998876554442 223
Q ss_pred CeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccE
Q 000861 1130 GIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSY 1163 (1249)
Q Consensus 1130 ~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~ 1163 (1249)
.++++++.|+| +|++|+.||.+++|.+....+..
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchheee
Confidence 78999999999 99999999999999997765543
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.2e-16 Score=177.19 Aligned_cols=241 Identities=18% Similarity=0.270 Sum_probs=179.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcccc---ccc------------eeeEeeccCCceEEEEEecC-CCEEEEEeCCCeEEEE
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDI---SFR------------SRLTYHLEGSRALCTMMLRH-SAQVVVGACDGIIHMF 910 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~---~~~------------~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~I~vw 910 (1249)
|+|+|.|+.|..|.|||+.-..... ... ....-.+|+..|.+++|..+ .+.||+||.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 5799999999999999986332111 000 01123468888889999874 4689999999999999
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecCCCCCce
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIPEEGYV 989 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~h~~~I 989 (1249)
|++ .|+ +...+..|.+.|.++. |+|..+ .+|++|+.|++|.+.|.|.... -..++. .+.|
T Consensus 272 D~~-----~g~--------p~~s~~~~~k~Vq~l~-wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~V 332 (463)
T KOG0270|consen 272 DVD-----TGK--------PKSSITHHGKKVQTLE-WHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEV 332 (463)
T ss_pred EcC-----CCC--------cceehhhcCCceeEEE-ecCCCc--eEEEeccccceEEeeeccCccccCceEEe---ccce
Confidence 999 333 3555667889999999 888864 4999999999999999994322 122232 6789
Q ss_pred EEEEEcCCC-CEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 990 SSLVTGPCG-NWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 990 ~sl~~spdg-~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
-.++|+|.. ..+++++.||+|+-+|+|.. +++.+.+ .|..+|.++++ ++... .++.+++.|+.|++|+
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~-n~~~p--------~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSV-NIQTP--------GLLSTASTDKVVKLWK 402 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEe-cCCCC--------cceeeccccceEEEEe
Confidence 999999955 78889999999999999965 8888876 59999999999 55433 4789999999999999
Q ss_pred CCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEE
Q 000861 1068 AENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTG 1145 (1249)
Q Consensus 1068 l~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tg 1145 (1249)
+..-....+.. +. +. .....|.++.|+- .++.|
T Consensus 403 ~~~~~~~~v~~----~~-------------------------------~~----------~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 403 FDVDSPKSVKE----HS-------------------------------FK----------LGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred ecCCCCccccc----cc-------------------------------cc----------ccceeecccCCCcceEEEec
Confidence 87443221111 00 00 0134566777766 88999
Q ss_pred eCCCcEEEEeCCCCCc
Q 000861 1146 GTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1146 s~Dg~IriWDl~~~~~ 1161 (1249)
|..+.+++||+.+...
T Consensus 438 G~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTNSP 453 (463)
T ss_pred CccceEEEeecccChh
Confidence 9999999999987654
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=170.45 Aligned_cols=198 Identities=16% Similarity=0.244 Sum_probs=146.7
Q ss_pred CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec--CCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 848 SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR--HSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 848 ~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp--dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
..+|++...|.|++||..++.. ...++++...+..+.|.. ..+.+.+|+.||+|++||++... +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~----e~--- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA----ES--- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch----hh---
Confidence 5688888899999999999773 456788888888999987 56889999999999999998221 11
Q ss_pred cCccceeeecCCCC-cEEEEEEecCCCCCccEEEEEEC----CCeEEEEEcCCCcc-ceeeecCCCCCceEEEEEcCC-C
Q 000861 926 SGISDIKKKDTKEG-AIVTLVNYNTDNCASHMFMYSTQ----NCGIHLWDTRSNSN-TWTLKAIPEEGYVSSLVTGPC-G 998 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~-~V~~l~~fs~d~~~g~~L~sgs~----dg~I~iwDlrt~~~-~~~l~~~~h~~~I~sl~~spd-g 998 (1249)
....+..+.+ +..++. .+-. ++.+++|+. +-.|.+||+|..+. +..+. ..|...|++++|+|. .
T Consensus 108 ----a~~~~~~~~~~~f~~ld-~nck---~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 108 ----ARISWTQQSGTPFICLD-LNCK---KNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ----hheeccCCCCCcceEee-ccCc---CCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCC
Confidence 1223333443 344444 3323 457777653 56899999998876 44443 569999999999995 4
Q ss_pred CEEEEEecCCcEEEEeCCCCC----cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCcee
Q 000861 999 NWFVSGSSRGVLTLWDLRFLV----PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 999 ~~L~sgs~dG~I~lWDlr~~~----~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~ 1074 (1249)
+.|++|+.||.|.+||+.... .+..+ .+...|.++.| +.++- ..|++-+...+..+|+++.+.+.
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw-~~~~y--------krI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGW-LSKKY--------KRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhh--cccceeeeeee-ecCCc--------ceEEEEEccCceeEEEccCCChh
Confidence 899999999999999996432 23333 36678999999 55552 25999999999999999998865
Q ss_pred EEEe
Q 000861 1075 QVLR 1078 (1249)
Q Consensus 1075 ~~l~ 1078 (1249)
..+.
T Consensus 248 ~~~~ 251 (376)
T KOG1188|consen 248 TWLE 251 (376)
T ss_pred hccc
Confidence 4443
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.9e-16 Score=164.97 Aligned_cols=290 Identities=11% Similarity=0.104 Sum_probs=204.6
Q ss_pred CCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 798 ASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 798 ~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
..+.|++.|..++.+..++..-+|+ .+-..-..|.+|..+|++++||+||++|+|+|.|..|++||+..+...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l------ 100 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL------ 100 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce------
Confidence 3678999999999998888889999 566677789999999999999999999999999999999999998732
Q ss_pred eEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 877 LTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
..+. ..++|+...|+|.. +.+++.-.+..-.+-++.. . ...+ -. ..-++..+.+.+...|.+. |+
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~--~h~~---Lp----~d~d~dln~sas~~~fdr~---g~ 166 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD-P--KHSV---LP----KDDDGDLNSSASHGVFDRR---GK 166 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC-C--ceee---cc----CCCccccccccccccccCC---CC
Confidence 2222 35679999999944 3444444444455555551 0 0111 00 0000111111121137777 88
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC-------CC--ccccccc
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF-------LV--PVNSWQY 1026 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~-------~~--~l~s~~~ 1026 (1249)
++++|+..|.+.++|..+-+++..++... ...|..+.++..|+.|+.-+.|..|+.|+++. ++ +.+.++.
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 99999999999999999999988876522 36899999999999999999999999999862 11 1122211
Q ss_pred -CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCC
Q 000861 1027 -SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNP 1104 (1249)
Q Consensus 1027 -~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~ 1104 (1249)
-....=.+++| +.+|. |+++++. ...++||.-..|..++.+.+..+.
T Consensus 246 vVNk~~Wk~ccf-s~dge---------Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE--------------------- 294 (405)
T KOG1273|consen 246 VVNKLQWKKCCF-SGDGE---------YVCAGSARAHALYIWEKSIGSLVKILHGTKGE--------------------- 294 (405)
T ss_pred HHhhhhhhheee-cCCcc---------EEEeccccceeEEEEecCCcceeeeecCCchh---------------------
Confidence 01223345677 77776 7777764 357999999999999999864431
Q ss_pred CccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1105 KTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1105 s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
....+.|+|-. .+++- ..|.|++|.....+....+
T Consensus 295 -------------------------~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 295 -------------------------ELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred -------------------------heeecccccceeeeeec-cCCceEEEEeecccchhhc
Confidence 23344555555 44444 6789999998877665444
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.9e-16 Score=175.62 Aligned_cols=235 Identities=18% Similarity=0.276 Sum_probs=172.0
Q ss_pred CCCccccccCCCCCccCCC----CcEEEEe------------------ccccCceeEEEEcCCC-CEEEEEECCCcEEEE
Q 000861 806 GLPSFVRTSSIPDSGWRPR----GILVAHL------------------QEHCSAVNEIAISHDH-SFFVSASDDSTVKVW 862 (1249)
Q Consensus 806 G~~~~~~s~~~~~~~W~~~----G~lv~~L------------------~~H~~~V~~la~spdg-~~laTgs~DgtVkIW 862 (1249)
|.+.+.+..+..+.+|++. -.+..+| .+|+++|..++|+..- ..||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 3345555556778899853 1122222 2799999999998764 589999999999999
Q ss_pred ECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcE
Q 000861 863 DSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 941 (1249)
Q Consensus 863 D~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V 941 (1249)
|+.+++ +..++..|++.|.++.|+| ....|++|+.|++|.+.|.+. ....+. .|+ ..+.|
T Consensus 272 D~~~g~------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~-~~~s~~-----------~wk-~~g~V 332 (463)
T KOG0270|consen 272 DVDTGK------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD-PSNSGK-----------EWK-FDGEV 332 (463)
T ss_pred EcCCCC------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC-ccccCc-----------eEE-eccce
Confidence 999998 4667778999999999999 557899999999999999982 111111 122 34567
Q ss_pred EEEEEecCCCCCccEEEEEECCCeEEEEEcCCC-ccceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCC
Q 000861 942 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN-SNTWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLV 1019 (1249)
Q Consensus 942 ~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~-~~~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~ 1019 (1249)
-.+. |.+.. ...+++++.||+|+-+|+|.. +++|+++. |.+.|+++++++.- ..+++++.|+.|++|++....
T Consensus 333 Ekv~-w~~~s--e~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 333 EKVA-WDPHS--ENSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEE-ecCCC--ceeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 7777 88875 348999999999999999986 78888855 99999999999854 688999999999999986444
Q ss_pred cccccccCC-CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCce
Q 000861 1020 PVNSWQYSQ-VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 1020 ~l~s~~~~~-~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~ 1073 (1249)
+.....+.. -+...|.++ .|+-. .+++.|+..+.++|||+.+...
T Consensus 408 ~~~v~~~~~~~~rl~c~~~-~~~~a--------~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFAL-DPDVA--------FTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred Ccccccccccccceeeccc-CCCcc--------eEEEecCccceEEEeecccChh
Confidence 322211111 112334444 55443 2566666677799999987653
No 161
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.70 E-value=1.4e-17 Score=204.48 Aligned_cols=399 Identities=18% Similarity=0.144 Sum_probs=309.1
Q ss_pred CCCCCCccccccccccccccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchh
Q 000861 115 EDVPNSTFSQDLRNSSVESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVL 194 (1249)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1249)
..+++..++.+...+.-+.....+.+-++.+..++.--||.-.++.+..++... .+..-...
T Consensus 137 ~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~------------------~~~~~~~~ 198 (759)
T KOG0211|consen 137 LLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL------------------PKEKLREH 198 (759)
T ss_pred HHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc------------------ChHHHHHH
Confidence 456677778888777777777788888889988888889999999999999888 44333455
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCc
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAK 274 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~ 274 (1249)
+.+++..+.-. ..-++|..+|.++...+..+.++.....+.|.+.++++|.+|+||.++.+.+..+.+.+.. .
T Consensus 199 lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~------~ 271 (759)
T KOG0211|consen 199 LVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES------E 271 (759)
T ss_pred HHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH------H
Confidence 66666555544 4555799999999999999998888899999999999999999999999999988888765 2
Q ss_pred chhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 275 IFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGF-------LVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 275 if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
+-...++|.+..|..|.+..||.+..+++..++.....- .+..-+..+++.-..+ ....
T Consensus 272 ~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~--------------~~~~ 337 (759)
T KOG0211|consen 272 IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVS--------------YMVA 337 (759)
T ss_pred HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHH--------------HHHh
Confidence 445679999999999999999999999988887654322 2222211111110000 0000
Q ss_pred ccchhHHH------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcC----ccccchhhhhhHhhhhcCCCHH
Q 000861 348 RLNADVQL------SQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFG----QRQSNDFLLPILPAFLNDRDEQ 417 (1249)
Q Consensus 348 ~~~~~~~~------~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G----~~~~~d~lLp~l~t~lnD~~w~ 417 (1249)
.-..++ +..+-.+.+.+..++ +|+..+||.+...++..+|.++. .+...+.+||.+..+..|.+.+
T Consensus 338 --~~~~~L~~~~~~~~~~~~~~~~~~~l~--~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 338 --DKFSELSSAVGPSATRTQLVPPVSNLL--KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALH 413 (759)
T ss_pred --hhhhhHHHHhccccCcccchhhHHHHh--cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccch
Confidence 000011 112235677888888 58999999999999999999999 6667778899999999999999
Q ss_pred HHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc----CCCchHHHHHHHHHhcccccCC
Q 000861 418 LRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS----GYLRKRILLEMIERAFPLLCYP 493 (1249)
Q Consensus 418 lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~----gl~~~~~~~~l~~~~~~ll~hp 493 (1249)
+|.|..-.+.++++.+|.+...+.++|+++.+|+|....|+.+.+..+..+-+. |.-+-.. .++|.+..+.-+.
T Consensus 414 vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~--slLp~i~el~~d~ 491 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN--SLLPAIVELAEDL 491 (759)
T ss_pred HHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh--hhhhhhhhhccch
Confidence 999999999999999999999999999999999999999999999666554443 4443332 5788888888888
Q ss_pred CHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCcCCHHHHHhccCCCCcHHHHHHHHHhhcc
Q 000861 494 SQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASLASVKALLSCLKPPVSREVFYQVLENARS 564 (1249)
Q Consensus 494 n~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~~~ll~~l~~PlsR~vf~~~~~~~~~ 564 (1249)
+|++|++++++|+.++.+++..-+..++-++++.|+.+.|..| .+.+ -.=+++-++..--+|+..
T Consensus 492 ~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~I-r~~a-----a~~l~~l~~~~G~~w~~~ 556 (759)
T KOG0211|consen 492 LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSI-REAA-----ARNLPALVETFGSEWARL 556 (759)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHH-HHHH-----HHHhHHHHHHhCcchhHH
Confidence 9999999999999999999988888889999999999888777 3333 333445555555566643
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=6.5e-16 Score=172.15 Aligned_cols=264 Identities=16% Similarity=0.182 Sum_probs=191.5
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEE--EeCCCeEEEEEccccccCCCccccccCccceee
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVV--GACDGIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Las--gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
..++++||+...+..-.+ ..+.. ...+.+++|..... |++ .+.|..+++|.-+ |+. .....++.
T Consensus 11 gd~~kl~D~s~~~~~~~~---~~~t~-~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~------g~~---~~Vp~~~k 76 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEY---VHQTA-EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD------GKT---PEVPRVRK 76 (673)
T ss_pred CCceEEeecccccCcccc---ccCCC-CCcceeeeccccce-EEEeecCCceeEEEeccc------CCC---Cccceeec
Confidence 347999999887642211 11122 22489999988664 444 4567888999866 321 11122333
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEE
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLW 1013 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lW 1013 (1249)
..+....+..+. .. ..++++|+..+.|+|||++...+...+ .+|.+.|+++.++....++++++..|-|.+.
T Consensus 77 ~~gd~~~Cv~~~---s~---S~y~~sgG~~~~Vkiwdl~~kl~hr~l--kdh~stvt~v~YN~~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 77 LTGDNAFCVACA---SQ---SLYEISGGQSGCVKIWDLRAKLIHRFL--KDHQSTVTYVDYNNTDEYIASVSDGGDIIIH 148 (673)
T ss_pred cccchHHHHhhh---hc---ceeeeccCcCceeeehhhHHHHHhhhc--cCCcceeEEEEecCCcceeEEeccCCcEEEE
Confidence 333333333332 22 358999999999999999966666555 4589999999999999999999999999999
Q ss_pred eCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccc
Q 000861 1014 DLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPW 1093 (1249)
Q Consensus 1014 Dlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~ 1093 (1249)
.+.++..-..+.++.+..|+-+.| +|..+ .+|.+++.+|.|.+||+........+.
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~y-s~skr--------~lL~~asd~G~VtlwDv~g~sp~~~~~--------------- 204 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRY-SPSKR--------FLLSIASDKGAVTLWDVQGMSPIFHAS--------------- 204 (673)
T ss_pred ecccCccccceecCCCCeEEEeec-ccccc--------eeeEeeccCCeEEEEeccCCCcccchh---------------
Confidence 999999988888777777888888 88765 577888899999999997443221111
Q ss_pred cccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCCCccEEEeCCCCC
Q 000861 1094 AFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSPGRSYCICGPNLK 1171 (1249)
Q Consensus 1094 sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~ 1171 (1249)
..|..+...++|+|.. .|++.|.|.+|.+||........++.
T Consensus 205 -------------------------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----- 248 (673)
T KOG4378|consen 205 -------------------------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----- 248 (673)
T ss_pred -------------------------------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-----
Confidence 2233467788999988 89999999999999998655443332
Q ss_pred CCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1172 GVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1172 ~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
-..+.+.++ |+++|.+|+.|...|.|..||
T Consensus 249 -----------------------------------------------y~~Plstva-f~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 249 -----------------------------------------------YSHPLSTVA-FSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred -----------------------------------------------ecCCcceee-ecCCceEEEeecCCceEEEEe
Confidence 123566888 899999999999999998886
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=5.2e-16 Score=177.42 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=202.4
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
.+.|.|||..+.... +...-+++ .+|.++.+|++|++.|+|++|+.||+.||+|+.|..|.+|...-.. .+
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-------~L 88 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-------IL 88 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-------ee
Confidence 577999998766554 34567888 5799999999999999999999999999999999999999865432 23
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.| .|+..|.|+.|.|-.+.|++++-.. .-+|..+ ...+.++. ....|.++. |..| |+++
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~-----qK~V~K~k----------ss~R~~~Cs-WtnD---Gqyl 147 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE-----QKSVSKHK----------SSSRIICCS-WTND---GQYL 147 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchhh-ccccChh-----hhhHHhhh----------hheeEEEee-ecCC---CcEE
Confidence 33 4788899999999999999987643 5688877 11111111 234577777 9999 8899
Q ss_pred EEEECCCeEEEEEcCCCccceeeec-CCCCCceEEEEEcCCC-----CEEEEEecCCcEEEEeCCCCCcccccccCCCCC
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKA-IPEEGYVSSLVTGPCG-----NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCP 1031 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~-~~h~~~I~sl~~spdg-----~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~ 1031 (1249)
+.|-.+|+|.+-+- +++....++. .+...+|.+++|+|.. ..+++.....++.++.+ .|+.+..-. .-+-.
T Consensus 148 alG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r-~L~Fd 224 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR-ALNFD 224 (1081)
T ss_pred EEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc-cCCCC
Confidence 99999999999864 4444444443 3456789999999953 57888888888888888 455544211 12234
Q ss_pred eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccc
Q 000861 1032 IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRN 1111 (1249)
Q Consensus 1032 I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~ 1111 (1249)
..++.+ .|+|. +++.|+.|+.+++|--+ |-.+.++..
T Consensus 225 P~CisY-f~NGE---------y~LiGGsdk~L~~fTR~-GvrLGTvg~-------------------------------- 261 (1081)
T KOG1538|consen 225 PCCISY-FTNGE---------YILLGGSDKQLSLFTRD-GVRLGTVGE-------------------------------- 261 (1081)
T ss_pred chhhee-ccCCc---------EEEEccCCCceEEEeec-CeEEeeccc--------------------------------
Confidence 567888 78888 99999999999999643 443333321
Q ss_pred ccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1112 VNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
...+|+.++..|++ +++.|+.||+|-.|++.
T Consensus 262 ---------------~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 ---------------QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---------------cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 11289999999999 99999999999999974
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=164.99 Aligned_cols=291 Identities=15% Similarity=0.214 Sum_probs=190.7
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEee-ccCCceEEEEEecCCCEEEEEeCCC
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH-LEGSRALCTMMLRHSAQVVVGACDG 905 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~-~h~~~V~sl~fspdg~~Lasgs~Dg 905 (1249)
+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+.. ....+. .|...|+.+.-.|+ ..+.+-+.|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc------cchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 4567889999999999988764 8899999999999999876 344566 35567888888887 5788889999
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecC-----CCCCc-cEEEEEECCC-eEEEEEcCCCccce
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNT-----DNCAS-HMFMYSTQNC-GIHLWDTRSNSNTW 978 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~-----d~~~g-~~L~sgs~dg-~I~iwDlrt~~~~~ 978 (1249)
.+.+|++.. + ....++. -.+.++. |.+ .+... ..+++-+... .+++-|......+.
T Consensus 78 ~L~lw~ia~-s----------~~i~i~S-----i~~nslg-FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 78 LLILWTIAY-S----------AFISIHS-----IVVNSLG-FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred eEEEEEccC-c----------ceEEEee-----eeccccc-cccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 999999981 1 0011111 1112222 222 11100 1222211111 12333332222221
Q ss_pred ee--ecCCCCCceEEEEEcC-CC--CEEEEEecCCcEEEEeCCCCCcccccc---------cCCCCCeeEEEEEcCCCCC
Q 000861 979 TL--KAIPEEGYVSSLVTGP-CG--NWFVSGSSRGVLTLWDLRFLVPVNSWQ---------YSQVCPIEKMCLFVPPPNA 1044 (1249)
Q Consensus 979 ~l--~~~~h~~~I~sl~~sp-dg--~~L~sgs~dG~I~lWDlr~~~~l~s~~---------~~~~~~I~~l~~~sp~g~~ 1044 (1249)
.. +..+..+.+.|..+.. ++ -++++|.++|.+.+||+.++..+-.+. ..|..+|.++.| .+...
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy-as~~~- 218 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY-ASSCD- 218 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee-chhhc-
Confidence 11 1123456777777554 23 356788999999999998873322211 237789999998 55433
Q ss_pred cccCCCCCEEEEEECCCeEEEEECCC--CceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccC
Q 000861 1045 AVSTTARPLIYVAAGCNEVSLWNAEN--GSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELN 1122 (1249)
Q Consensus 1045 ~~~~~~~~~l~t~s~Dg~I~vWDl~t--g~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~ 1122 (1249)
.=++++.+..+..|++.. +.+..... +
T Consensus 219 --------rGisgga~dkl~~~Sl~~s~gslq~~~e-~------------------------------------------ 247 (323)
T KOG0322|consen 219 --------RGISGGADDKLVMYSLNHSTGSLQIRKE-I------------------------------------------ 247 (323)
T ss_pred --------CCcCCCccccceeeeeccccCcccccce-E------------------------------------------
Confidence 225666677888888763 22211100 0
Q ss_pred CCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccch
Q 000861 1123 EPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSK 1201 (1249)
Q Consensus 1123 ~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~ 1201 (1249)
.-...+|..+..-||+ .++|+|+|++||+|...+.....++
T Consensus 248 --~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL------------------------------------ 289 (323)
T KOG0322|consen 248 --TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL------------------------------------ 289 (323)
T ss_pred --EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh------------------------------------
Confidence 0011267778888999 9999999999999999887664443
Q ss_pred hhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1202 LTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1202 ~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+.|.+.|++++ |+|+..++|+||.|+.|-+|+
T Consensus 290 ---------------kyHsagvn~vA-fspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 290 ---------------KYHSAGVNAVA-FSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ---------------hhhhcceeEEE-eCCCCchhhhccCCceEEeee
Confidence 36999999999 999999999999999999996
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=2.8e-15 Score=160.49 Aligned_cols=311 Identities=14% Similarity=0.180 Sum_probs=210.0
Q ss_pred cEEEEec-cccCceeEEEEcC-----CCCEEEEEECCCcEEEEECCCCccccccceeeEee--ccCCceEEEEEecC---
Q 000861 826 ILVAHLQ-EHCSAVNEIAISH-----DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH--LEGSRALCTMMLRH--- 894 (1249)
Q Consensus 826 ~lv~~L~-~H~~~V~~la~sp-----dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~--~h~~~V~sl~fspd--- 894 (1249)
++..+++ .|+.+|..++|++ +-+.|||++. ..+.+|.+...... +...++. .|......++|+-+
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---r~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---RLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---eeeeeccCCCCCcceEEEEEEecCCC
Confidence 3455555 4779999999985 2346777665 57888887654321 1222332 25566778888764
Q ss_pred -CCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 895 -SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 895 -g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
..++|+|+.-|.|+|.|+. .++ ....+.+|.+.|..+. |+|+.+ +++++++.|..|++|++++
T Consensus 104 ~~p~la~~G~~GvIrVid~~-----~~~--------~~~~~~ghG~sINeik-~~p~~~--qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVV-----SGQ--------CSKNYRGHGGSINEIK-FHPDRP--QLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCeeEEeecceeEEEEEecc-----hhh--------hccceeccCccchhhh-cCCCCC--cEEEEecCCceEEEEeccC
Confidence 3478889999999999998 222 3556778999999999 999964 4999999999999999999
Q ss_pred Cccceeee-cCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCccccc---------------------------c
Q 000861 974 NSNTWTLK-AIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSW---------------------------Q 1025 (1249)
Q Consensus 974 ~~~~~~l~-~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~---------------------------~ 1025 (1249)
+.++..+. ..+|.+.|.++.|+.+|.++++++.|..|++|++...+....+ .
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99988874 4679999999999999999999999999999999732211110 1
Q ss_pred cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCC
Q 000861 1026 YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPK 1105 (1249)
Q Consensus 1026 ~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s 1105 (1249)
.-|...|.++.| -| .++++-+.+|.|..|..- +..+.+..... |...
T Consensus 248 diHrnyVDCvrw---~g---------d~ilSkscenaI~~w~pg--kl~e~~~~vkp---------------~es~---- 294 (385)
T KOG1034|consen 248 DIHRNYVDCVRW---FG---------DFILSKSCENAIVCWKPG--KLEESIHNVKP---------------PESA---- 294 (385)
T ss_pred ccccchHHHHHH---Hh---------hheeecccCceEEEEecc--hhhhhhhccCC---------------Cccc----
Confidence 113334444444 12 378888999999999872 22111110000 0000
Q ss_pred ccccccccccccccccCCCCCCCCCeEEEeecCC--C-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeec
Q 000861 1106 TDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG--G-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETR 1182 (1249)
Q Consensus 1106 ~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd--g-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~ 1182 (1249)
...+... .-....++-+.|.-| + .|+.|...|.|.+||+...+....-.
T Consensus 295 --~Ti~~~~----------~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt---------------- 346 (385)
T KOG1034|consen 295 --TTILGEF----------DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT---------------- 346 (385)
T ss_pred --eeeeeEe----------ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce----------------
Confidence 0000000 111225666665544 4 89999999999999998765521000
Q ss_pred cCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1183 SSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1183 ~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
... ..-...|...+ |+.++.+|+...+||+|.-||
T Consensus 347 ------l~~-------------------------s~~~~tVRQ~s-fS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 347 ------LTH-------------------------SKSGSTVRQTS-FSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ------EEe-------------------------ccccceeeeee-ecccCcEEEEEeCCCcEEEEE
Confidence 000 01134677888 899999999999999999886
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=2.6e-15 Score=171.03 Aligned_cols=215 Identities=14% Similarity=0.211 Sum_probs=152.1
Q ss_pred cEEEEeccccCceeEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC
Q 000861 826 ILVAHLQEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD 904 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D 904 (1249)
+-+..|.+|.+.|+.+.|+| +..+|||||.|..||||.+..+....-..+...+.+..-.|-|+.|+|...-|...+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 35778999999999999999 44589999999999999998554211111222333344478999999976666666678
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC-CccceeeecC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS-NSNTWTLKAI 983 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt-~~~~~~l~~~ 983 (1249)
|++++||+. + ++ .+..+.+|...|.+.. |+.| |.++++++.|..|+|||.|+ ++.++..+
T Consensus 150 g~v~i~D~s-t----qk--------~~~el~~h~d~vQSa~-WseD---G~llatscKdkqirifDPRa~~~piQ~te-- 210 (1012)
T KOG1445|consen 150 GSVYITDIS-T----QK--------TAVELSGHTDKVQSAD-WSED---GKLLATSCKDKQIRIFDPRASMEPIQTTE-- 210 (1012)
T ss_pred ceEEEEEcc-c----Cc--------eeecccCCchhhhccc-cccC---CceEeeecCCcceEEeCCccCCCcccccc--
Confidence 999999998 2 22 3566777888888888 9999 88999999999999999996 45565553
Q ss_pred CCCCc-eEEEEEcCCCCEEEEEecC----CcEEEEeCC-CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE
Q 000861 984 PEEGY-VSSLVTGPCGNWFVSGSSR----GVLTLWDLR-FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA 1057 (1249)
Q Consensus 984 ~h~~~-I~sl~~spdg~~L~sgs~d----G~I~lWDlr-~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~ 1057 (1249)
+|.+. =..+.|--+-..|++.+.+ ..|++||.| ++.+++++.......|.--.| .||.+ +++.+
T Consensus 211 ~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~-DpDt~---------llfLa 280 (1012)
T KOG1445|consen 211 GHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLY-DPDTR---------LLFLA 280 (1012)
T ss_pred ccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeee-cCCCc---------eEEEe
Confidence 34432 2345565444455554443 469999998 567777776555555555556 78776 44444
Q ss_pred -ECCCeEEEEECC
Q 000861 1058 -AGCNEVSLWNAE 1069 (1249)
Q Consensus 1058 -s~Dg~I~vWDl~ 1069 (1249)
-+++++..+.+.
T Consensus 281 GKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 281 GKGTNKLFMLEMQ 293 (1012)
T ss_pred cCCcceEEEEEec
Confidence 456677777664
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=166.13 Aligned_cols=218 Identities=16% Similarity=0.156 Sum_probs=161.3
Q ss_pred ccCCceEEEEEecCC--CEEEEEeCCCeEEEEEccccccCC---CccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 881 LEGSRALCTMMLRHS--AQVVVGACDGIIHMFSVDHISRGL---GNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg--~~Lasgs~Dg~I~vwdv~~~~~~~---g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
.|.+.+..+.-.+-+ .+.++-+..|.|+||++....+.. +...++...+++.++.+|.+.-+.+. |+|-. ..
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld-WSp~~--~g 225 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD-WSPIK--TG 225 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee-ccccc--cc
Confidence 344556555555533 455555778999999987322221 11234456678899999999999999 99953 23
Q ss_pred EEEEEECCCeEEEEEcCCCccce-eeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCc-ccccccCCCCCe
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTW-TLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVP-VNSWQYSQVCPI 1032 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~-~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~-l~s~~~~~~~~I 1032 (1249)
.+++|..-+.|++|...++.-.. ...+.+|...|-.++|+|.. ..|++|+-||+|+|||+|.+.. -......|.+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 68899999999999998865321 22345699999999999964 7899999999999999998732 222234688899
Q ss_pred eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc---eeEEEecccCCCCCCcccccccccCCCCCCCCCcccc
Q 000861 1033 EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS---CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLR 1109 (1249)
Q Consensus 1033 ~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~---~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~ 1109 (1249)
+-+.| +..-. +|++|+.||+++|||++..+ .+..|.
T Consensus 306 NVISW-nr~~~---------lLasG~DdGt~~iwDLR~~~~~~pVA~fk------------------------------- 344 (440)
T KOG0302|consen 306 NVISW-NRREP---------LLASGGDDGTLSIWDLRQFKSGQPVATFK------------------------------- 344 (440)
T ss_pred eeEEc-cCCcc---------eeeecCCCceEEEEEhhhccCCCcceeEE-------------------------------
Confidence 99999 55443 89999999999999998643 233333
Q ss_pred ccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCC
Q 000861 1110 RNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~ 1158 (1249)
-|...|+++.|+|.. .|+++|.|..|.+||+.-
T Consensus 345 ----------------~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 345 ----------------YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ----------------eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 233489999999876 899999999999999964
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=168.20 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=166.9
Q ss_pred eEeeccCCceEEEEEecCC--CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc
Q 000861 877 LTYHLEGSRALCTMMLRHS--AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fspdg--~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
..+..+.++|++++|+|.. +.+++|..-|.|-+||++ ++...+. .+..+..|.++|.++. |+|.+.+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~------~~~~d~d---~v~~f~~hs~~Vs~l~-F~P~n~s- 248 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFG------TQEKDKD---GVYLFTPHSGPVSGLK-FSPANTS- 248 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecC------CCCCccC---ceEEeccCCccccceE-ecCCChh-
Confidence 4566788899999999954 578889999999999996 1111222 2566778999999999 9998744
Q ss_pred cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCc-ccccccCCCCCee
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVP-VNSWQYSQVCPIE 1033 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~-l~s~~~~~~~~I~ 1033 (1249)
.+++.+.||+|+.-|+..+.....+........+.++.|+.+...++.|+.=|...+||+|++.. ...+.. |...|+
T Consensus 249 -~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~ 326 (498)
T KOG4328|consen 249 -QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKIT 326 (498)
T ss_pred -heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccc
Confidence 99999999999999998875443333333456778888988888888888888999999998765 555543 777999
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~ 1113 (1249)
++++ +|-.. .++++|+.|++++|||++.-..... +.+
T Consensus 327 sv~~-NP~~p--------~~laT~s~D~T~kIWD~R~l~~K~s---------p~l------------------------- 363 (498)
T KOG4328|consen 327 SVAL-NPVCP--------WFLATASLDQTAKIWDLRQLRGKAS---------PFL------------------------- 363 (498)
T ss_pred eeec-CCCCc--------hheeecccCcceeeeehhhhcCCCC---------cce-------------------------
Confidence 9999 98765 5789999999999999985432211 000
Q ss_pred ccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
....|...|.+..|||.| .|+|.+.|..||+||..
T Consensus 364 ---------st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 364 ---------STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ---------ecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 012345589999999999 99999999999999984
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=5.5e-15 Score=155.48 Aligned_cols=308 Identities=16% Similarity=0.188 Sum_probs=205.6
Q ss_pred CCCEEEEEE----CCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-CEEEEEeCC-------CeEEEEEcc
Q 000861 846 DHSFFVSAS----DDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACD-------GIIHMFSVD 913 (1249)
Q Consensus 846 dg~~laTgs----~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~D-------g~I~vwdv~ 913 (1249)
|.-.|.+|. .|+.|.+-++....... ....+..|.+.|+.++-+|-. +.|+++..+ ..+.||.+.
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence 333455554 46778777776654321 123567788899999999954 455555432 246799987
Q ss_pred ccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeec---CCCCCc
Q 000861 914 HISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKA---IPEEGY 988 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~---~~h~~~ 988 (1249)
. .. +. ..+...+++..++ .+-+.+.|+. |.|+ +..+++-. +..|.+|++..+.. ...+.. ..+...
T Consensus 102 e-~~--~~-S~~~tlE~v~~Ldteavg~i~cve-w~Pn---s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 102 E-PL--GQ-SNSSTLECVASLDTEAVGKINCVE-WEPN---SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred c-cc--Cc-cccchhhHhhcCCHHHhCceeeEE-EcCC---CCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 1 11 11 2233344555565 4567899998 9998 56777766 88999999987765 333322 124556
Q ss_pred eEEEEEcC--CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 989 VSSLVTGP--CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 989 I~sl~~sp--dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
.++-+|+| +|+.+++ +.|+++..||+|+..+..++...|...|..+.| .|+.. .+|++|+.||.|++|
T Consensus 173 ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf-Npnkq--------~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF-NPNKQ--------HILVTCGDDGYVRIW 242 (370)
T ss_pred ecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccC-CCCce--------EEEEEcCCCccEEEE
Confidence 78889999 6666655 568999999999999999998889999999999 99876 578888889999999
Q ss_pred ECCCCce-eEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEE
Q 000861 1067 NAENGSC-HQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLL 1143 (1249)
Q Consensus 1067 Dl~tg~~-~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~ 1143 (1249)
|.+.-+. ++. ..+|...|+++.|.|.. .++
T Consensus 243 D~R~tk~pv~e-----------------------------------------------l~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 243 DTRKTKFPVQE-----------------------------------------------LPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred eccCCCccccc-----------------------------------------------cCCCceEEEEEEecCccceEEE
Confidence 9875431 111 23455599999999876 999
Q ss_pred EEeCCCcEEEEeCCCCCccEEE-eCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHH-HHhhhcccccCCccc
Q 000861 1144 TGGTDLKIRRWDHCSPGRSYCI-CGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKA-VLAAAATDSAGCHRD 1221 (1249)
Q Consensus 1144 tgs~Dg~IriWDl~~~~~~~~l-~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~-~~~~~~~~~l~~H~d 1221 (1249)
+||.|..|.+|...+-..-..+ .+..... .- ..+...+. .+..+..++...|.|
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese-----~e-------------------~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESE-----SE-------------------DEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ecCCCceeEEEecccccccccccccccccc-----Cc-------------------chhhHHhccccccccccccccccc
Confidence 9999999999998653321111 1111000 00 00000000 111122336678999
Q ss_pred ceeEEEeeec-CCCEEEEEeCCCeEEE
Q 000861 1222 SILSLGSVKL-NQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1222 ~I~~la~~s~-dg~~LaSgs~DG~IkV 1247 (1249)
.|.+++ |+. +.-++||-|.||.+-|
T Consensus 332 SVY~~a-WSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 332 SVYALA-WSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ceEEEe-eccCCCeeEEEeccCceEEe
Confidence 999999 654 5566788999998865
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=173.53 Aligned_cols=376 Identities=13% Similarity=0.144 Sum_probs=253.7
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCC---EEEEEECCCcEEEEECCCCccccccc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHS---FFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~---~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
+..|++|+..++... .....++. .+|.++..|.+|..+++.+.+.|... ++++++.||+|++||...++...++.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 346888998888776 45577888 79999999999999999999988653 67899999999999987654222111
Q ss_pred --------------------------------------------------------------------------------
Q 000861 875 -------------------------------------------------------------------------------- 874 (1249)
Q Consensus 875 -------------------------------------------------------------------------------- 874 (1249)
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence
Q ss_pred --eeeEe---------------eccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCC
Q 000861 875 --SRLTY---------------HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK 937 (1249)
Q Consensus 875 --~~~t~---------------~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h 937 (1249)
....+ ..|.-.++|.+++|+++++++|..||.|.+|+--.. .- .....+.+.-|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~----~~~t~t~lHWH 250 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SD----DSETCTLLHWH 250 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----cc----ccccceEEEec
Confidence 00000 013334688999999999999999999999986510 10 11235667779
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF 1017 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~ 1017 (1249)
...|.++. |+++ |.+|++|+..|.+.+|.+.+++.. -+ +.-.++|..+.++||+.+.++...|..|.+-...+
T Consensus 251 ~~~V~~L~-fS~~---G~~LlSGG~E~VLv~Wq~~T~~kq-fL--PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 251 HDEVNSLS-FSSD---GAYLLSGGREGVLVLWQLETGKKQ-FL--PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccccceeE-EecC---CceEeecccceEEEEEeecCCCcc-cc--cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 99999999 9999 789999999999999999999833 23 34578999999999999999999999999987755
Q ss_pred CCcccccc---cC-------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCC-CC
Q 000861 1018 LVPVNSWQ---YS-------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDG-DT 1086 (1249)
Q Consensus 1018 ~~~l~s~~---~~-------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~-~~ 1086 (1249)
.....++. .. ..+-.+.+++ +|..+ .++..+..|.|.+||+-+.+.+..+....... .+
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~i-dpr~~---------~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSI-DPRTN---------SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEE-cCCCC---------ceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 44333222 11 2334556777 77444 57778889999999998877666665433221 11
Q ss_pred CcccccccccCCCCCCCCCccccccccc--------------cccccccCC-----------CCCCCCCeEEEeecCCC-
Q 000861 1087 EMSDLPWAFARPSSRSNPKTDLRRNVNQ--------------KYRVDELNE-----------PPPRLLGIRSLLPLPGG- 1140 (1249)
Q Consensus 1087 ~i~~l~~sp~~p~~~~~~s~dg~~~~~~--------------~~~~~~~~~-----------~~~~~~~V~sl~~spdg- 1140 (1249)
..+. ..++..++....|..+... ..+.|.... ..+|...+.+.++.+..
T Consensus 394 ~~n~-----~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 394 DVNI-----QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred ccee-----EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 1000 0111122222223332221 122232221 13555555555554332
Q ss_pred --eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCC
Q 000861 1141 --DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGC 1218 (1249)
Q Consensus 1141 --~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 1218 (1249)
..+|+|.||.+++|-+.+.+..+.. ...+.+..+.- .
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~----------------~s~W~c~~i~s-------------------------y 507 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKK----------------SSNWTCKAIGS-------------------------Y 507 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcC----------------ccceEEeeeec-------------------------c
Confidence 7899999999999998655442211 11222222211 4
Q ss_pred cccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1219 HRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1219 H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
|...+++++ |+.||. ++++|.|++|.+||
T Consensus 508 ~k~~i~a~~-fs~dGs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 508 HKTPITALC-FSQDGS-LLAVSFDDTITIWD 536 (792)
T ss_pred ccCcccchh-hcCCCc-EEEEecCCEEEEec
Confidence 788899999 999995 66789999999997
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=3.9e-15 Score=170.34 Aligned_cols=275 Identities=17% Similarity=0.240 Sum_probs=202.3
Q ss_pred ceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccc
Q 000861 837 AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHIS 916 (1249)
Q Consensus 837 ~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~ 916 (1249)
.|+.++|-|||..++.+.. ..+.+||...+. ...++++|...|.|++|+.||+.+++|+.|..|.+|.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE- 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-
Confidence 8999999999987766544 479999999987 36689999999999999999999999999999999987611
Q ss_pred cCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcC
Q 000861 917 RGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGP 996 (1249)
Q Consensus 917 ~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~sp 996 (1249)
|. -. ..|.+.|.|+. |+|- ...+++++- +..-+|........ .. .....+.+++|..
T Consensus 86 ---G~----------Lk-YSH~D~IQCMs-FNP~---~h~LasCsL-sdFglWS~~qK~V~-K~---kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 86 ---GI----------LK-YSHNDAIQCMS-FNPI---THQLASCSL-SDFGLWSPEQKSVS-KH---KSSSRIICCSWTN 142 (1081)
T ss_pred ---ce----------ee-eccCCeeeEee-cCch---HHHhhhcch-hhccccChhhhhHH-hh---hhheeEEEeeecC
Confidence 21 11 13788899998 9998 567777764 34667876544322 12 1356788999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCCcccccc--cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCcee
Q 000861 997 CGNWFVSGSSRGVLTLWDLRFLVPVNSWQ--YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCH 1074 (1249)
Q Consensus 997 dg~~L~sgs~dG~I~lWDlr~~~~l~s~~--~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~ 1074 (1249)
||.+++.|-.+|+|.+-+- ++++...+. .+...+|.+++| +|... ......+.+.....++.++.+. |+.+
T Consensus 143 DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~-~p~sg----~G~~di~aV~DW~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICW-NPSSG----EGRNDILAVADWGQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEe-cCCCC----CCccceEEEEeccceeEEEEec-ceee
Confidence 9999999999999999865 444433333 346679999999 77654 1223467778888888888775 4322
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRR 1153 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~Iri 1153 (1249)
..-+ .+.| .-.|+.+.++| +++.||.|+.+.+
T Consensus 216 gk~r-----------~L~F------------------------------------dP~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 216 GKDR-----------ALNF------------------------------------DPCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred cccc-----------cCCC------------------------------------CchhheeccCCcEEEEccCCCceEE
Confidence 2111 1112 23578888999 9999999999999
Q ss_pred EeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCC
Q 000861 1154 WDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQ 1233 (1249)
Q Consensus 1154 WDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg 1233 (1249)
|--+. -..-+ +......|+.++ ..|++
T Consensus 249 fTR~G-vrLGT---------------------------------------------------vg~~D~WIWtV~-~~PNs 275 (1081)
T KOG1538|consen 249 FTRDG-VRLGT---------------------------------------------------VGEQDSWIWTVQ-AKPNS 275 (1081)
T ss_pred EeecC-eEEee---------------------------------------------------ccccceeEEEEE-EccCC
Confidence 86532 11111 112346899999 89999
Q ss_pred CEEEEEeCCCeEEEcC
Q 000861 1234 RLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1234 ~~LaSgs~DG~IkVWd 1249 (1249)
++++-|..||+|-.|+
T Consensus 276 Q~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYN 291 (1081)
T ss_pred ceEEEEEccCeeehhh
Confidence 9999999999997764
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5e-15 Score=168.84 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=208.6
Q ss_pred ccCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCC--EEEEE
Q 000861 777 CKFPEMGTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHS--FFVSA 853 (1249)
Q Consensus 777 ~~~~~~g~~~~i~~~~~~~~~~~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~--~laTg 853 (1249)
|.+-|.||.+-+.+ +...+.|..+++++.+++.++|. .+|+++.++. -.+.|.|++|+|.+. .||.+
T Consensus 392 ~~lvyrGHtg~Vr~---------iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 392 CALVYRGHTGLVRS---------ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eeeeEeccCCeEEE---------EEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 45556677665554 33456788899999899999999 8999999987 345899999999875 34443
Q ss_pred ECCCcEEEEECCCCcccc----------------------cc---------ceeeEeeccCCceEEEEEecCCCEEEEEe
Q 000861 854 SDDSTVKVWDSRKLEKDI----------------------SF---------RSRLTYHLEGSRALCTMMLRHSAQVVVGA 902 (1249)
Q Consensus 854 s~DgtVkIWD~~~~~~~~----------------------~~---------~~~~t~~~h~~~V~sl~fspdg~~Lasgs 902 (1249)
..+++-|-+..-+.... ++ +..+..-.|...|..+.|+..|.||++..
T Consensus 462 -~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 -VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred -ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 33335555443321100 00 01123334677899999999999999875
Q ss_pred CC---CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcccee
Q 000861 903 CD---GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWT 979 (1249)
Q Consensus 903 ~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~ 979 (1249)
.+ ..|.|+++.. . . ....+....|.+.++. |+|. ..++++++. ..|++||+...+.+..
T Consensus 541 ~~~~~~~VliHQLSK-~----~--------sQ~PF~kskG~vq~v~-FHPs---~p~lfVaTq-~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSK-R----K--------SQSPFRKSKGLVQRVK-FHPS---KPYLFVATQ-RSVRIYDLSKQELVKK 602 (733)
T ss_pred cCCCcceEEEEeccc-c----c--------ccCchhhcCCceeEEE-ecCC---CceEEEEec-cceEEEehhHHHHHHH
Confidence 53 5688888871 1 1 1122333457788888 9998 567877775 6899999998777666
Q ss_pred eecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 980 LKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 980 l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
+.. ....|.+++++|.|..|++|+.|+.++.+|+..+ ++.+++.. |...+++++| |+.-. ++++|+
T Consensus 603 L~t--g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~-H~ryP---------Lfas~s 669 (733)
T KOG0650|consen 603 LLT--GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAF-HKRYP---------LFASGS 669 (733)
T ss_pred Hhc--CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhh-ccccc---------eeeeec
Confidence 632 4678999999999999999999999999999754 56666664 8889999999 88776 889999
Q ss_pred CCCeEEEEECC------CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeE
Q 000861 1059 GCNEVSLWNAE------NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIR 1132 (1249)
Q Consensus 1059 ~Dg~I~vWDl~------tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~ 1132 (1249)
.||++.|+--. ..-.+.-++...+|. .....+|.
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~----------------------------------------~~~~~gVL 709 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE----------------------------------------KTNDLGVL 709 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCce----------------------------------------eecccceE
Confidence 99999988421 111111111111110 00112788
Q ss_pred EEeecCCC-eEEEEeCCCcEEEE
Q 000861 1133 SLLPLPGG-DLLTGGTDLKIRRW 1154 (1249)
Q Consensus 1133 sl~~spdg-~L~tgs~Dg~IriW 1154 (1249)
.+.|+|.. +|+++|.||+||+|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 99999999 99999999999999
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=4.9e-15 Score=161.83 Aligned_cols=214 Identities=12% Similarity=0.141 Sum_probs=164.7
Q ss_pred EeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccE
Q 000861 878 TYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 878 t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.+.+|.++|..++|+| +.+.||+||.|.+|.||.+... +..... ..++..+.+|...|--+. |+|.. .+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~----~l~~~l--tepvv~L~gH~rrVg~V~-wHPtA--~NV 146 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPEN----GLTRDL--TEPVVELYGHQRRVGLVQ-WHPTA--PNV 146 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCc----ccccCc--ccceEEEeecceeEEEEe-ecccc--hhh
Confidence 5778999999999999 6678999999999999999721 111111 246888999999999998 99986 459
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCC-CeeEE
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVC-PIEKM 1035 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~-~I~~l 1035 (1249)
|++++.|..|.+||+.+|+...++. |.+.|++++|+.+|.+|++++.|..|++||.|+++.+..-. +|.+ .-.+.
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Ra 222 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARA 222 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCccee
Confidence 9999999999999999999887764 89999999999999999999999999999999999988753 4543 44566
Q ss_pred EEEcCCCCCcccCCCCCEEEEEEC----CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAG----CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRN 1111 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~----Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~ 1111 (1249)
.| ..++. +++.+- +..+.+||..+.+..-.+......
T Consensus 223 if-l~~g~----------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---------------------------- 263 (472)
T KOG0303|consen 223 IF-LASGK----------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---------------------------- 263 (472)
T ss_pred EE-eccCc----------eeeeccccccccceeccCcccccCcceeEEeccC----------------------------
Confidence 66 66665 455443 568999998765543333322110
Q ss_pred ccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCCC
Q 000861 1112 VNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
.+|.---|.+|. ..++|-.|+.||+|.+.+-.
T Consensus 264 -----------------nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 264 -----------------NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred -----------------CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 144444455666 56678889999999997654
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=6.2e-15 Score=155.07 Aligned_cols=288 Identities=15% Similarity=0.168 Sum_probs=190.5
Q ss_pred EeccccCceeEEEEcCCC-CEEEEEECC-------CcEEEEECCCCccc---cccceeeEee-ccCCceEEEEEecCCCE
Q 000861 830 HLQEHCSAVNEIAISHDH-SFFVSASDD-------STVKVWDSRKLEKD---ISFRSRLTYH-LEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg-~~laTgs~D-------gtVkIWD~~~~~~~---~~~~~~~t~~-~h~~~V~sl~fspdg~~ 897 (1249)
.|..|.+.|..++-+|-. +.|+|+..| ..+.||.+...... .+..+...+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 456677889999999854 566666442 24679988654321 1122233333 34568999999999999
Q ss_pred EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 898 Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
+++-. |..|.+|+++...+....+ ....-..+....++-. |+|.. +++.+ ..+.++++..||+|++.+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev-------~ss~s~e~~~~ftsg~-WspHH-dgnqv-~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEV-------LSSESAEMRHSFTSGA-WSPHH-DGNQV-ATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchheee-------cccccccccceecccc-cCCCC-ccceE-EEeCCCcEEEEEccchhhh
Confidence 98866 7889999998221111111 0000111344556666 88853 24444 4566899999999999998
Q ss_pred eeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCC-CCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRF-LVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~-~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
+.+. ..|...|..+.|+|+. .+|++|+.||.|++||.|. ..+++++. +|...|.++.| +|... .+|+
T Consensus 207 ~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRf-n~~hd--------qLiL 275 (370)
T KOG1007|consen 207 NSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRF-NPEHD--------QLIL 275 (370)
T ss_pred cchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEe-cCccc--------eEEE
Confidence 8886 4688899999999976 6788999999999999995 45677654 69999999999 88765 5888
Q ss_pred EEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEe
Q 000861 1056 VAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLL 1135 (1249)
Q Consensus 1056 t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~ 1135 (1249)
+++.|..|.+|....-...+.+.......+.+... ..... ..+.-..+.....|...|.+++
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d-------seer~-----------kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED-------SEERV-----------KPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchh-------hHHhc-----------ccccccccccccccccceEEEe
Confidence 99999999999876543322222111100000000 00000 0011112334456778999999
Q ss_pred ecCCC--eEEEEeCCCcEEEEeCC
Q 000861 1136 PLPGG--DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1136 ~spdg--~L~tgs~Dg~IriWDl~ 1157 (1249)
|+.-. .+++-+.||++.|=.+.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 98766 78889999999887664
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=162.73 Aligned_cols=230 Identities=19% Similarity=0.232 Sum_probs=164.7
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec--CCCEEEEEeC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR--HSAQVVVGAC 903 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp--dg~~Lasgs~ 903 (1249)
.+-+.|.||++.|+|+.|+.||.+|++||+|-.+.|||.-..+. ....-.+|...|.++.|.| +.+.+++|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl-----lhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL-----LHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce-----eeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 45678999999999999999999999999999999999985542 1223467999999999999 5578899999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcccee----
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWT---- 979 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~---- 979 (1249)
|..|++||++ ..+.-| .........+.+..|...|..++ -.|++| +.+.+++.||+|+-+|+|.......
T Consensus 116 Dk~i~lfdl~-~~~~~~--~d~~~~~~~~~~~cht~rVKria-~~p~~P--htfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 116 DKLIKLFDLD-SSKEGG--MDHGMEETTRCWSCHTDRVKRIA-TAPNGP--HTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred cceEEEEecc-cccccc--cccCccchhhhhhhhhhhhhhee-cCCCCC--ceEEEecCCcceeeecccCCccCCccccc
Confidence 9999999998 222111 11122234566777888888888 778764 4999999999999999997432111
Q ss_pred ---e-ecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCC------------------cccccccCCC-------
Q 000861 980 ---L-KAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLV------------------PVNSWQYSQV------- 1029 (1249)
Q Consensus 980 ---l-~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~------------------~l~s~~~~~~------- 1029 (1249)
+ ...+.--...|+.++|.. .+|++|+.|-..++||.|... ++..+..+|-
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 0 111122356789999954 789999999999999954211 1222222221
Q ss_pred -CC---eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEE
Q 000861 1030 -CP---IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQV 1076 (1249)
Q Consensus 1030 -~~---I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~ 1076 (1249)
.. ++-+.| +|+|. -+++.-+...|+++|+..++....
T Consensus 270 ~~~~~~~t~vtf-npNGt---------ElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 270 DRYITCCTYVTF-NPNGT---------ELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccceeeeEEEEE-CCCCc---------EEEEeeCCeEEEEEeecCCCCcee
Confidence 11 344566 88877 566666666799999987665443
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.3e-14 Score=159.60 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=140.5
Q ss_pred cCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCcccc---ccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEE
Q 000861 835 CSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDI---SFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMF 910 (1249)
Q Consensus 835 ~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~---~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vw 910 (1249)
..+|..+.|.+++. +++||+.|..|+||-+.+.+... .......+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35899999998776 99999999999999988766432 334455677899999999999999999999999999999
Q ss_pred EccccccCC---Ccccccc-CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 911 SVDHISRGL---GNVEKYS-GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 911 dv~~~~~~~---g~~~~~~-~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
.... .+.. .+..... .....+.+.+|...+..++ |+|+ +.++++++.|+.+++||++.|.....+ ..|.
T Consensus 93 k~~~-~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~-Ws~d---~~~l~s~s~dns~~l~Dv~~G~l~~~~--~dh~ 165 (434)
T KOG1009|consen 93 KQGD-VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA-WSPD---SNFLVSGSVDNSVRLWDVHAGQLLAIL--DDHE 165 (434)
T ss_pred EecC-cCCccccchhhhCccceEEEEEecccccchhhhh-ccCC---CceeeeeeccceEEEEEeccceeEeec--cccc
Confidence 8762 1110 0100001 1123455677999999999 9999 789999999999999999999988777 5688
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF 1017 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~ 1017 (1249)
..+..++|+|-++++++-+.|...+.+++..
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeee
Confidence 9999999999999999998888777776654
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=2.6e-13 Score=160.20 Aligned_cols=356 Identities=21% Similarity=0.302 Sum_probs=241.0
Q ss_pred CCCCCCCCCccccccCCCCCccCCCCc--EEEEeccccC-ceeEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-Cccccc
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWRPRGI--LVAHLQEHCS-AVNEIAI-SHDHS-FFVSASD-DSTVKVWDSRK-LEKDIS 872 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~~~G~--lv~~L~~H~~-~V~~la~-spdg~-~laTgs~-DgtVkIWD~~~-~~~~~~ 872 (1249)
..+.+.|......+.+....+|+..+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+++||... ..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 146 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---- 146 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe----
Confidence 344555555444444567889995443 7888887554 8888888 88887 5555455 99999999987 33
Q ss_pred cceeeEeeccCCceEEEEEecCCCEEEEEeC-CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCC
Q 000861 873 FRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 951 (1249)
Q Consensus 873 ~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~ 951 (1249)
....+..|...|.+++|+|++..+++++. |+.+++|++.. + ..+..+..|...+.++. |+|+
T Consensus 147 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~v~~~~-~~~~- 209 (466)
T COG2319 147 --LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----G--------KPLSTLAGHTDPVSSLA-FSPD- 209 (466)
T ss_pred --EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----C--------ceEEeeccCCCceEEEE-EcCC-
Confidence 35678889999999999999998888885 99999999981 1 23556666889999998 8888
Q ss_pred CCcc-EEEEEECCCeEEEEEcCCCccce-eeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCc-ccccccCC
Q 000861 952 CASH-MFMYSTQNCGIHLWDTRSNSNTW-TLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVP-VNSWQYSQ 1028 (1249)
Q Consensus 952 ~~g~-~L~sgs~dg~I~iwDlrt~~~~~-~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~-l~s~~~~~ 1028 (1249)
+. .+++++.|+.|.+||...+.... .+ ..|.... ...|++++..+++++.|+.+++||.+.... +... .+|
T Consensus 210 --~~~~~~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~ 283 (466)
T COG2319 210 --GGLLIASGSSDGTIRLWDLSTGKLLRSTL--SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH 283 (466)
T ss_pred --cceEEEEecCCCcEEEEECCCCcEEeeec--CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC
Confidence 55 55555899999999998776665 34 4455554 338999998999999999999999987665 4444 457
Q ss_pred CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCC-Ccc
Q 000861 1029 VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNP-KTD 1107 (1249)
Q Consensus 1029 ~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~-s~d 1107 (1249)
...+.++.| .|++. .+++++.|+.+.+||..+........ ...+ ...+..+.+ .......... ..+
T Consensus 284 ~~~v~~~~~-~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~d 350 (466)
T COG2319 284 SSSVLSVAF-SPDGK---------LLASGSSDGTVRLWDLETGKLLSSLT-LKGH-EGPVSSLSF-SPDGSLLVSGGSDD 350 (466)
T ss_pred CccEEEEEE-CCCCC---------EEEEeeCCCcEEEEEcCCCceEEEee-eccc-CCceEEEEE-CCCCCEEEEeecCC
Confidence 789999999 88666 67778888889999998877666555 1111 113444444 2110111111 122
Q ss_pred ccccccccccccccCCCCCCCCCeEEEeecCCC-eEEE-EeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCC
Q 000861 1108 LRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLT-GGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSS 1185 (1249)
Q Consensus 1108 g~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~t-gs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~ 1185 (1249)
+.... .................+..+.+.+ . .+.. ++.++.+.+|+............
T Consensus 351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 410 (466)
T COG2319 351 GTIRL-WDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG------------------ 410 (466)
T ss_pred CcEEe-eecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC------------------
Confidence 11111 1111111000011111267777777 5 3443 78999999999987655433321
Q ss_pred ceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1186 GVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1186 ~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
+...+.... +++++..+++++.++.+++|+
T Consensus 411 ---------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 411 ---------------------------------HTSRVTSLD-FSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ---------------------------------CCCcEEEEE-ECCCCcEEEEecCCCcEEEEe
Confidence 114566676 788889999999999999985
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3.3e-15 Score=170.25 Aligned_cols=264 Identities=17% Similarity=0.235 Sum_probs=186.4
Q ss_pred eeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc
Q 000861 875 SRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
...+...|...|.++.|.+....|++|+.||++.+|++.. ... ..-....++.++.+|.++|.|++ +.++ +
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-~~~----s~~~~~epi~tfraH~gPVl~v~-v~~n---~ 356 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-AKK----SAEKDVEPILTFRAHEGPVLCVV-VPSN---G 356 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-cCC----ccccceeeeEEEecccCceEEEE-ecCC---c
Confidence 3446777888899999999999999999999999999952 111 11123457889999999999999 8887 7
Q ss_pred cEEEEEECCCeEEEEEcCCCcc------ceee--ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCccccccc
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSN------TWTL--KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQY 1026 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~------~~~l--~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~ 1026 (1249)
..+++|+.||+|+.|++..... ...+ ...+|.+.|+.+++++....|++++.||++++|+.....+ .++..
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence 8999999999999996652211 1111 2357999999999999999999999999999999866555 33322
Q ss_pred CCC-CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCC
Q 000861 1027 SQV-CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPK 1105 (1249)
Q Consensus 1027 ~~~-~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s 1105 (1249)
+.. +.-..+.+ ..... .+.++...-+.-.+++++.+.....+.......
T Consensus 436 ~~e~g~Plsvd~-~ss~~--------a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--------------------- 485 (577)
T KOG0642|consen 436 PKEHGYPLSVDR-TSSRP--------AHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--------------------- 485 (577)
T ss_pred ccccCCcceEee-ccchh--------HhhhhhcccccccchhhhhhhheeeccccCCCc---------------------
Confidence 211 22234444 11110 122222223334445555555444443211100
Q ss_pred ccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccC
Q 000861 1106 TDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSS 1184 (1249)
Q Consensus 1106 ~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~ 1184 (1249)
......+.-+.++|.+ +.+++..|+.|+++|..+++.....
T Consensus 486 -------------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~------------------- 527 (577)
T KOG0642|consen 486 -------------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM------------------- 527 (577)
T ss_pred -------------------ccccCccceEEecCCCCeeEecccCCceecccccccccchhe-------------------
Confidence 1111256677788888 9999999999999999887764332
Q ss_pred CceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1185 SGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1185 ~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
..|.+.+++++ +.|+|.+|++|+.||.|++|+
T Consensus 528 --------------------------------~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 528 --------------------------------VAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred --------------------------------eeccceeccee-ecCCCceEEeecCCceeehhh
Confidence 26889999999 999999999999999999995
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=5.8e-13 Score=157.31 Aligned_cols=253 Identities=23% Similarity=0.338 Sum_probs=192.5
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC-CceEEEEE-ecCCC-EEEEEeC-C
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG-SRALCTMM-LRHSA-QVVVGAC-D 904 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~-~~V~sl~f-spdg~-~Lasgs~-D 904 (1249)
..+.+|...|.++.+.+.+..++.++.|+.+.+|+...... ....+..+. ..+..+.+ .+++. .++..+. |
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-----LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-----eEEEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 45678999999999999999999999999999999988751 133444433 35777777 77777 5555445 9
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCCCccceeeecC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
+.+.+|+.. . .......+..|...+..+. |+|+ +..+++++. ++.+++|+...+.....+.
T Consensus 134 ~~~~~~~~~------~------~~~~~~~~~~~~~~v~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (466)
T COG2319 134 GTVKLWDLS------T------PGKLIRTLEGHSESVTSLA-FSPD---GKLLASGSSLDGTIKLWDLRTGKPLSTLA-- 195 (466)
T ss_pred ccEEEEEec------C------CCeEEEEEecCcccEEEEE-ECCC---CCEEEecCCCCCceEEEEcCCCceEEeec--
Confidence 999999998 1 1124566777889999898 9999 567888875 9999999999977777664
Q ss_pred CCCCceEEEEEcCCCC-EEEEEecCCcEEEEeCCCCCccc-ccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC
Q 000861 984 PEEGYVSSLVTGPCGN-WFVSGSSRGVLTLWDLRFLVPVN-SWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN 1061 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg~-~L~sgs~dG~I~lWDlr~~~~l~-s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg 1061 (1249)
+|...|.+++|+|++. .+++++.|+.+.+||.+.+..+. .+. +|.... -..| +|++. ++++++.|+
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~---------~~~~~~~d~ 263 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSF-SPDGS---------LLASGSSDG 263 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeE-CCCCC---------EEEEecCCC
Confidence 3889999999999997 55555899999999998777776 333 455443 2267 88876 788899999
Q ss_pred eEEEEECCCCce-eEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC
Q 000861 1062 EVSLWNAENGSC-HQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG 1140 (1249)
Q Consensus 1062 ~I~vWDl~tg~~-~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg 1140 (1249)
.+++||...... ...+ .. |...+.++.|.|++
T Consensus 264 ~~~~~~~~~~~~~~~~~---~~--------------------------------------------~~~~v~~~~~~~~~ 296 (466)
T COG2319 264 TIRLWDLRSSSSLLRTL---SG--------------------------------------------HSSSVLSVAFSPDG 296 (466)
T ss_pred cEEEeeecCCCcEEEEE---ec--------------------------------------------CCccEEEEEECCCC
Confidence 999999987654 2222 11 12278888999977
Q ss_pred -eEEEEeCCCcEEEEeCCCCCccE
Q 000861 1141 -DLLTGGTDLKIRRWDHCSPGRSY 1163 (1249)
Q Consensus 1141 -~L~tgs~Dg~IriWDl~~~~~~~ 1163 (1249)
.+++++.|+.+++||........
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 297 KLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred CEEEEeeCCCcEEEEEcCCCceEE
Confidence 77779999999999887665433
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.3e-13 Score=142.07 Aligned_cols=251 Identities=13% Similarity=0.172 Sum_probs=173.2
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccc----ccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDI----SFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~----~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
..|.+-+++|.+++|+.|+.+|+|-+..+....... .-.......+|.++|..++|. ...|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 346677899999999999999999999887543211 112344668899999999998 34666765 59999998
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEE
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSS 991 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~s 991 (1249)
.....+..+.-..+.-..+.+.-...--.|.++. ..|. .+-++.++.|+.++.||+++|+...++ .+|.+.|.+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~-ldP~---enSi~~AgGD~~~y~~dlE~G~i~r~~--rGHtDYvH~ 161 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMW-LDPS---ENSILFAGGDGVIYQVDLEDGRIQREY--RGHTDYVHS 161 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeE-eccC---CCcEEEecCCeEEEEEEecCCEEEEEE--cCCcceeee
Confidence 7622111110000000001111011223577776 7777 345666668999999999999998888 569999999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEeCCCCCccccccc--------CC-CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe
Q 000861 992 LVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQY--------SQ-VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE 1062 (1249)
Q Consensus 992 l~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~--------~~-~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~ 1062 (1249)
+.--.....+++|+.||++++||.++++.+..+.. +| ...|.+++. +.. +++ |++...
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~ed---------Wlv-CGgGp~ 228 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NED---------WLV-CGGGPK 228 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCc---------eEE-ecCCCc
Confidence 99866667899999999999999999998876542 11 224555554 222 554 445667
Q ss_pred EEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeE
Q 000861 1063 VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDL 1142 (1249)
Q Consensus 1063 I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L 1142 (1249)
+.+|.++..++..++.... .+..+.|..| .+
T Consensus 229 lslwhLrsse~t~vfpipa------------------------------------------------~v~~v~F~~d-~v 259 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPA------------------------------------------------RVHLVDFVDD-CV 259 (325)
T ss_pred eeEEeccCCCceEEEeccc------------------------------------------------ceeEeeeecc-eE
Confidence 9999999999888876211 4555666544 67
Q ss_pred EEEeCCCcEEEEeCC
Q 000861 1143 LTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1143 ~tgs~Dg~IriWDl~ 1157 (1249)
+++|..+.|.-|.+.
T Consensus 260 l~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN 274 (325)
T ss_pred EEeccccceeeeeec
Confidence 788888899999875
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=2.4e-15 Score=160.98 Aligned_cols=234 Identities=12% Similarity=0.171 Sum_probs=169.7
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR 893 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp 893 (1249)
+.+++-+ ..+++...+.+|.++|+.|.++|+. +++++||.|.+||+|++++......+. -+.+|.+.|.++.|+.
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG---G~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG---GVEGHRDEVLSVDFSL 191 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---ccccccCcEEEEEEcC
Confidence 4567778 5789999999999999999999976 699999999999999999987433221 3467999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccccccCCCcc---cc---------ccCc----cceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 894 HSAQVVVGACDGIIHMFSVDHISRGLGNV---EK---------YSGI----SDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 894 dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~---~~---------~~~~----~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
+|.++++++.|.++++|++.. .+-...+ .. +... ....+-+.|...|-|+. |--+ ++
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~-~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr-w~gd-----~i 264 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNV-KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR-WFGD-----FI 264 (385)
T ss_pred CCCeeeccCCcceEEEEecCh-hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH-HHhh-----he
Confidence 999999999999999999972 1100111 00 1100 01113345777788887 5434 99
Q ss_pred EEEECCCeEEEEEcC-CCcc-------------ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccc
Q 000861 958 MYSTQNCGIHLWDTR-SNSN-------------TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNS 1023 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlr-t~~~-------------~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s 1023 (1249)
++-+.++.|..|-.. -++. ...+..+.-.-+-..++|+|.+++|+.|...|.|.+||++...+...
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 999999999999872 2221 11122111111233456788899999999999999999998776422
Q ss_pred ccc---CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1024 WQY---SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1024 ~~~---~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
-+. .....|+..+| +.++. .|+..+.|+.|.-||..
T Consensus 345 ttl~~s~~~~tVRQ~sf-S~dgs---------~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSF-SRDGS---------ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceEEeccccceeeeeee-cccCc---------EEEEEeCCCcEEEEEee
Confidence 121 13457888899 88888 89999999999999853
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=141.50 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=165.9
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCC
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC 964 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg 964 (1249)
.|.+-+|+|.+++|++|..+|.|.++.+........ ...+...+...++|++++..++ |..+ +|++|+. |
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---~~~gk~~iv~eqahdgpiy~~~-f~d~-----~Lls~gd-G 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---EPPGKLKIVPEQAHDGPIYYLA-FHDD-----FLLSGGD-G 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc---CCCCCcceeeccccCCCeeeee-eehh-----heeeccC-c
Confidence 366778899999999999999999999873221111 1223335666688999999999 7755 7777775 9
Q ss_pred eEEEEEcCCCcc------ceeeecCCCC-----CceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCee
Q 000861 965 GIHLWDTRSNSN------TWTLKAIPEE-----GYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE 1033 (1249)
Q Consensus 965 ~I~iwDlrt~~~------~~~l~~~~h~-----~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~ 1033 (1249)
.|+-|..+.... .|..+.+-|. -.|+++-++|..+-++.++.||.++.||+.+|+....++ +|...|+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH 160 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVH 160 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceee
Confidence 999999875432 4444444333 358999999988888888899999999999999988876 6999999
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~ 1113 (1249)
++.-.+..+ .+++|++||++++||.+++++++++.......- +.
T Consensus 161 ~vv~R~~~~----------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-----lR--------------------- 204 (325)
T KOG0649|consen 161 SVVGRNANG----------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-----LR--------------------- 204 (325)
T ss_pred eeeecccCc----------ceeecCCCccEEEEeccccceeEEeccccChhh-----cC---------------------
Confidence 988622233 699999999999999999999999885432110 00
Q ss_pred ccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
+.....|.+++.+.| ++++|+ ...+.+|++...+...++.-+
T Consensus 205 -----------p~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 205 -----------PDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred -----------cccCceeEEEeccCc-eEEecC-CCceeEEeccCCCceEEEecc
Confidence 011126777776544 777775 568999999998887777544
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=4.6e-14 Score=154.34 Aligned_cols=213 Identities=15% Similarity=0.241 Sum_probs=161.3
Q ss_pred EeccccCceeEEEEcCC-CCEEEEEECCCcEEEEECCCCccccc-cceeeEeeccCCceEEEEEecC-CCEEEEEeCCCe
Q 000861 830 HLQEHCSAVNEIAISHD-HSFFVSASDDSTVKVWDSRKLEKDIS-FRSRLTYHLEGSRALCTMMLRH-SAQVVVGACDGI 906 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spd-g~~laTgs~DgtVkIWD~~~~~~~~~-~~~~~t~~~h~~~V~sl~fspd-g~~Lasgs~Dg~ 906 (1249)
.+.||+++|..++|+|- ...+||||.|.+|+||++........ ..+...+.+|..+|--+.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46799999999999994 46899999999999999876543221 1356788999999999999994 578999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
|.+|++. +|+. +-+++ |.+-|.++. |+.+ |.++++++.|..|++||.|+++.+..- .+|.
T Consensus 156 v~iWnv~-----tgea--------li~l~-hpd~i~S~s-fn~d---Gs~l~TtckDKkvRv~dpr~~~~v~e~--~~he 215 (472)
T KOG0303|consen 156 VSIWNVG-----TGEA--------LITLD-HPDMVYSMS-FNRD---GSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHE 215 (472)
T ss_pred EEEEecc-----CCce--------eeecC-CCCeEEEEE-eccC---CceeeeecccceeEEEcCCCCcEeeec--cccc
Confidence 9999999 3332 33344 899999999 9999 789999999999999999999988766 3455
Q ss_pred C-ceEEEEEcCCCCEEEEEec---CCcEEEEeCCCCC-cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-CC
Q 000861 987 G-YVSSLVTGPCGNWFVSGSS---RGVLTLWDLRFLV-PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-GC 1060 (1249)
Q Consensus 987 ~-~I~sl~~spdg~~L~sgs~---dG~I~lWDlr~~~-~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~D 1060 (1249)
| ......|-.+|..+-+|.+ +..+-+||...-. ++..........|.---| .|+.+ .++.++ +|
T Consensus 216 G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy-D~dt~---------ivYl~GKGD 285 (472)
T KOG0303|consen 216 GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY-DPDTS---------IVYLCGKGD 285 (472)
T ss_pred CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee-cCCCC---------EEEEEecCC
Confidence 4 3455667778886666643 6789999986433 332222233444544334 77776 666655 69
Q ss_pred CeEEEEECCCCc
Q 000861 1061 NEVSLWNAENGS 1072 (1249)
Q Consensus 1061 g~I~vWDl~tg~ 1072 (1249)
+.|+-|.+..-.
T Consensus 286 ~~IRYyEit~d~ 297 (472)
T KOG0303|consen 286 SSIRYFEITNEP 297 (472)
T ss_pred cceEEEEecCCC
Confidence 999999997654
No 184
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=162.34 Aligned_cols=309 Identities=17% Similarity=0.219 Sum_probs=219.1
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC--CCEEEEEeC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH--SAQVVVGAC 903 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd--g~~Lasgs~ 903 (1249)
.+...|..|.+.|+.+.|+..|..++|||+|..|.+||+.++..... -..+|...|....|.|. ...+++++.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-----f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-----FESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc-----cccccccchhhhhccCCCCCcCceeccc
Confidence 35667899999999999999999999999999999999998874322 23568888888889883 468999999
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecC
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
||.+++=.+... +.+ ...+.+..|.++|..++ ..|+.+ ..+.+++.|+.+.-+|++++.....+...
T Consensus 208 dgqvr~s~i~~t----~~~------e~t~rl~~h~g~vhkla-v~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 208 DGQVRVSEILET----GYV------ENTKRLAPHEGPVHKLA-VEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred cCceeeeeeccc----cce------ecceecccccCccceee-ecCCCC--CcccccccccceeeeeeccCCccceeeee
Confidence 999998877611 221 12344566899999888 788764 38999999999999999988765544322
Q ss_pred C-CCC---ceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCC------cccccccC-----CCCCeeEEEEEcCCCCCccc
Q 000861 984 P-EEG---YVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLV------PVNSWQYS-----QVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 984 ~-h~~---~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~------~l~s~~~~-----~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
. +.. ...+++.+|.. +.+++|+.|-.+++||.|.-. .+..+... ....|++++| +.++.
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y-sh~~s---- 349 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY-SHDGS---- 349 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe-cCCcc----
Confidence 2 222 57889999965 589999999999999997422 23433322 2346899999 76665
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCC
Q 000861 1048 TTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPR 1127 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~ 1127 (1249)
-++++-.|-.|+++.-..+.- . ...+.+|..+... ...++|
T Consensus 350 -----ElLaSYnDe~IYLF~~~~~~G-----------~---~p~~~s~~~~~~k--------------------~vYKGH 390 (559)
T KOG1334|consen 350 -----ELLASYNDEDIYLFNKSMGDG-----------S---EPDPSSPREQYVK--------------------RVYKGH 390 (559)
T ss_pred -----ceeeeecccceEEeccccccC-----------C---CCCCCcchhhccc--------------------hhhccc
Confidence 577777888899985332210 0 0000000000000 001122
Q ss_pred C--CCeEEEeec-CCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhh
Q 000861 1128 L--LGIRSLLPL-PGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLT 1203 (1249)
Q Consensus 1128 ~--~~V~sl~~s-pdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~ 1203 (1249)
. ..|.++-|- |.. ++++|++=|.|.||+-.+++.+..+.|-
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD----------------------------------- 435 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD----------------------------------- 435 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-----------------------------------
Confidence 1 235566553 555 9999999999999999888776555432
Q ss_pred HHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1204 AKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1204 ~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
.| .|+||. -+|--..|||+|-|--||||
T Consensus 436 --------------r~--VVNCLE-pHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 436 --------------RH--VVNCLE-PHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred --------------cc--eEeccC-CCCCCchhhccCCccceeee
Confidence 13 899998 77888999999999999999
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=146.40 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=174.2
Q ss_pred CCCCCCCCCccccccCCCCCccC-CC--------CcE----EEEecc-ccCceeEEEEc-------CCCCEEEEEECCCc
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PR--------GIL----VAHLQE-HCSAVNEIAIS-------HDHSFFVSASDDST 858 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~--------G~l----v~~L~~-H~~~V~~la~s-------pdg~~laTgs~Dgt 858 (1249)
...+|||.-+.+.+.+....+|+ |. +.+ ...++- ....|...+|- |+..++++.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 45688998888777666677787 31 111 111221 23467777775 67789999999999
Q ss_pred EEEEECCCCccccccceeeEeec--cCC---ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceee
Q 000861 859 VKVWDSRKLEKDISFRSRLTYHL--EGS---RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 859 VkIWD~~~~~~~~~~~~~~t~~~--h~~---~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
|++||.-+++. +..|.+ |.. ...+++|+|||.+|++| ....|++||+...++... .++. ..+.
T Consensus 135 Ih~wdaftG~l------raSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~---vy~t--~~~~ 202 (406)
T KOG2919|consen 135 IHLWDAFTGKL------RASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP---VYTT--VTKG 202 (406)
T ss_pred eeeeecccccc------ccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc---chhh--hhcc
Confidence 99999999984 334433 222 45789999999999876 567899999963332111 1111 0011
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CCcEEE
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RGVLTL 1012 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG~I~l 1012 (1249)
-.+..+-+.+++ |+|.. ...++.|+....+-+|.-..++.+..+ .+|.+.|+.++|.++|+.|.+|.. +-.|-+
T Consensus 203 k~gq~giisc~a-~sP~~--~~~~a~gsY~q~~giy~~~~~~pl~ll--ggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 203 KFGQKGIISCFA-FSPMD--SKTLAVGSYGQRVGIYNDDGRRPLQLL--GGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred cccccceeeeee-ccCCC--CcceeeecccceeeeEecCCCCceeee--cccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 122345566666 99985 448999999999999988888888777 579999999999999999999986 678999
Q ss_pred EeCCC-CCcccccccCCCC-CeeEEEEE-cCCCCCcccCCCCCEEEEEECCCeEEEEECCC-Cc
Q 000861 1013 WDLRF-LVPVNSWQYSQVC-PIEKMCLF-VPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN-GS 1072 (1249)
Q Consensus 1013 WDlr~-~~~l~s~~~~~~~-~I~~l~~~-sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t-g~ 1072 (1249)
||+|. +.++..+.. |.. .-.+|.|- .|.++ +|++|+.||.|++||+.+ |.
T Consensus 278 WDiR~~~~pv~~L~r-hv~~TNQRI~FDld~~~~---------~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 278 WDIRYSRDPVYALER-HVGDTNQRILFDLDPKGE---------ILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred Eeehhccchhhhhhh-hccCccceEEEecCCCCc---------eeeccCCCccEEEEecCCCCC
Confidence 99995 556666653 433 33456551 45555 899999999999999987 44
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=3.8e-15 Score=174.93 Aligned_cols=248 Identities=17% Similarity=0.256 Sum_probs=187.2
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI 906 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~ 906 (1249)
.+..|.||..+|.|..|...|.+++||++|..||||...+.. +..+..||.+.|+.++.+.+...+++++.|..
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR------CLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh------hhccCCCCccccchhccchhhhhhhhcccCce
Confidence 455688999999999999999999999999999999988877 46688899999999999999999999999999
Q ss_pred EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcccee---eecC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWT---LKAI 983 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~---l~~~ 983 (1249)
|++|.+. .+. ++..+.+|+|.|++++ |+|- . +.+.||++++||.+-.-.++. ++ .
T Consensus 256 IrvWrl~-----~~~--------pvsvLrghtgavtaia-fsP~---~----sss~dgt~~~wd~r~~~~~y~prp~~-~ 313 (1113)
T KOG0644|consen 256 IRVWRLP-----DGA--------PVSVLRGHTGAVTAIA-FSPR---A----SSSDDGTCRIWDARLEPRIYVPRPLK-F 313 (1113)
T ss_pred EEEEecC-----CCc--------hHHHHhccccceeeec-cCcc---c----cCCCCCceEeccccccccccCCCCCC-c
Confidence 9999998 222 4677888999999999 9987 1 667899999999982111111 11 1
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeE
Q 000861 984 PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I 1063 (1249)
.....+.++.|...+.-+++|+.|+.-..|..... .| +...+.-+.. ..+. ..+.+++-.+-.+
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----~~---~~~~lif~t~-ssd~--------~~~~~~ar~~~~~ 377 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----AW---RSNLLIFVTR-SSDL--------SSIVVTARNDHRL 377 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHh----hh---hccceEEEec-cccc--------cccceeeeeeeEe
Confidence 12456778888888889999999999888865211 11 1111111111 1111 1256666677789
Q ss_pred EEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--e
Q 000861 1064 SLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--D 1141 (1249)
Q Consensus 1064 ~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~ 1141 (1249)
.+|++.+|.....+.++ ...+..+.++|-+ .
T Consensus 378 ~vwnl~~g~l~H~l~gh-----------------------------------------------sd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 378 CVWNLYTGQLLHNLMGH-----------------------------------------------SDEVYVLDVHPFNPRI 410 (1113)
T ss_pred eeeecccchhhhhhccc-----------------------------------------------ccceeeeeecCCCcHh
Confidence 99999988766555432 2267788888877 6
Q ss_pred EEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1142 LLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1142 L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
..++|.||...|||+..+...+..
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhhccCCCceEeeecccCCcceee
Confidence 778999999999999887765554
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=151.70 Aligned_cols=192 Identities=12% Similarity=0.207 Sum_probs=147.1
Q ss_pred CCCCCccC-CCCcEEEEeccccCceeEEEEcCC--CCEEEEEECCCcEEEEECCCCccccccceeeEeeccC-CceEEEE
Q 000861 815 SIPDSGWR-PRGILVAHLQEHCSAVNEIAISHD--HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG-SRALCTM 890 (1249)
Q Consensus 815 ~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spd--g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~-~~V~sl~ 890 (1249)
...+++++ .+|+.+..+++|.+.++.+.|..+ ...+.+|+.||+|++||++...+. ++..+..+. .+..|++
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQSGTPFICLD 124 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCCCCcceEee
Confidence 45678888 579999999999999999999873 468999999999999999987643 345566666 3566777
Q ss_pred EecCCCEEEEEeC----CCeEEEEEccccccCCCccccccCccceee-ecCCCCcEEEEEEecCCCCCccEEEEEECCCe
Q 000861 891 MLRHSAQVVVGAC----DGIIHMFSVDHISRGLGNVEKYSGISDIKK-KDTKEGAIVTLVNYNTDNCASHMFMYSTQNCG 965 (1249)
Q Consensus 891 fspdg~~Lasgs~----Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~-l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~ 965 (1249)
...+++.+++|+. |-.|.+||++... +.++. .+.|...|+++. |+|..++ +|++|+.||-
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~q------------q~l~~~~eSH~DDVT~lr-FHP~~pn--lLlSGSvDGL 189 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQ------------QLLRQLNESHNDDVTQLR-FHPSDPN--LLLSGSVDGL 189 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEecccc------------chhhhhhhhccCcceeEE-ecCCCCC--eEEeecccce
Confidence 6667788888753 6789999998211 11333 345899999999 9999765 9999999999
Q ss_pred EEEEEcCCCccceee-ecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccc
Q 000861 966 IHLWDTRSNSNTWTL-KAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 966 I~iwDlrt~~~~~~l-~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~ 1025 (1249)
|.+||+.....--.+ ....+...|.++.|..++ +.+.+-+..++..+|++..+.+...+.
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999999865331111 112356779999999887 568888899999999998887655443
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=3.7e-13 Score=161.84 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=189.0
Q ss_pred CCccCC--CCcEEEEeccccCceeEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 818 DSGWRP--RGILVAHLQEHCSAVNEIAISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~--~G~lv~~L~~H~~~V~~la~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
..+|+. .+.+-..+. -...|+|+.|+|.. .++|.|+.+|.|.+||+..+..............|..+++.+.|..+
T Consensus 224 ~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred EEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 456762 245555554 35689999999954 58888999999999999988753222222344568889999999875
Q ss_pred CC--EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcC
Q 000861 895 SA--QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTR 972 (1249)
Q Consensus 895 g~--~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlr 972 (1249)
.. -|++++.||.|..|+++....+......-.. .....-......++++. |.+..+. .++.|+.+|.|..-+-.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~-~~~~~~~~~~~~~t~~~-F~~~~p~--~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK-KHKGQQSSKAVGATSLK-FEPTDPN--HFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccc-cccccccccccceeeEe-eccCCCc--eEEEEcCCcEEEEEecc
Confidence 44 4999999999999998833321111100000 00000011234577787 8887654 89999999999874433
Q ss_pred CCccce------eeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC-CCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 973 SNSNTW------TLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR-FLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 973 t~~~~~------~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr-~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
..+... ......|.+.|+++.++|-+..++..+.|.++++|... ...++..+.. +...+++++| +|...
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaW-Sptrp-- 454 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAW-SPTRP-- 454 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEE-cCcCc--
Confidence 222211 11224588999999999977555554559999999987 6667776653 5667999999 88765
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCC
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPP 1125 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~ 1125 (1249)
..++++..||.+.+||+.......+... .
T Consensus 455 ------avF~~~d~~G~l~iWDLl~~~~~Pv~s~------------~--------------------------------- 483 (555)
T KOG1587|consen 455 ------AVFATVDGDGNLDIWDLLQDDEEPVLSQ------------K--------------------------------- 483 (555)
T ss_pred ------eEEEEEcCCCceehhhhhccccCCcccc------------c---------------------------------
Confidence 3566667799999999975432211110 0
Q ss_pred CCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1126 PRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1126 ~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
......+.+.|++.| .|++|...|++.+|++..
T Consensus 484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 001145677788888 999999999999999963
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=3.3e-12 Score=149.27 Aligned_cols=241 Identities=10% Similarity=0.106 Sum_probs=150.1
Q ss_pred EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEe-CCCeEEEEEccccccCCCccccccC
Q 000861 849 FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGA-CDGIIHMFSVDHISRGLGNVEKYSG 927 (1249)
Q Consensus 849 ~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs-~Dg~I~vwdv~~~~~~~g~~~~~~~ 927 (1249)
.+++...|+.|.+||+.+... .+...++. +.+....++++|++++|++++ .++.|.+|+++ . .+.+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~---l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~---~g~l----- 70 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGA---LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-D---DGAL----- 70 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCc---eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-C---CCce-----
Confidence 345557799999999964321 11223333 234577899999999887764 57889999987 1 1222
Q ss_pred ccceeeecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEEEEEcCCCc-cceeeecCCCCCceEEEEEcCCCCEEEEEe
Q 000861 928 ISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIHLWDTRSNS-NTWTLKAIPEEGYVSSLVTGPCGNWFVSGS 1005 (1249)
Q Consensus 928 ~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~iwDlrt~~-~~~~l~~~~h~~~I~sl~~spdg~~L~sgs 1005 (1249)
..+.... ..+....+. |+|+ ++.+++++ .++.|.+||+.+.. .........+...+.+++++|+++++++++
T Consensus 71 -~~~~~~~-~~~~p~~i~-~~~~---g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 71 -TFAAESP-LPGSPTHIS-TDHQ---GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred -EEeeeec-CCCCceEEE-ECCC---CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee
Confidence 1111111 223456677 9999 66777665 48899999997432 211121111234567789999998886655
Q ss_pred -cCCcEEEEeCCCCCccc-----ccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCC--Cce--e
Q 000861 1006 -SRGVLTLWDLRFLVPVN-----SWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAEN--GSC--H 1074 (1249)
Q Consensus 1006 -~dG~I~lWDlr~~~~l~-----s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~t--g~~--~ 1074 (1249)
.++.|.+||+.....+. ............+.| +|+++ +++++.. +++|.+||+.. ++. .
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~-~pdg~---------~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF-HPNQQ---------YAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE-CCCCC---------EEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 56999999997633221 111122345678899 99998 8888876 89999999973 332 1
Q ss_pred EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe-CCCcEE
Q 000861 1075 QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG-TDLKIR 1152 (1249)
Q Consensus 1075 ~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs-~Dg~Ir 1152 (1249)
+.+...... .........+.++|+| +++++. .++.|.
T Consensus 215 ~~~~~~p~~-----------------------------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 215 QTLDMMPAD-----------------------------------------FSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred EEEecCCCc-----------------------------------------CCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 111110000 0000133468899999 677664 578999
Q ss_pred EEeCCCC
Q 000861 1153 RWDHCSP 1159 (1249)
Q Consensus 1153 iWDl~~~ 1159 (1249)
+|++...
T Consensus 254 v~~i~~~ 260 (330)
T PRK11028 254 VFSVSED 260 (330)
T ss_pred EEEEeCC
Confidence 9999654
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=2.1e-13 Score=150.23 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=194.3
Q ss_pred CccccccCCCCCccC-----CCC-----cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECC--------CCcc
Q 000861 808 PSFVRTSSIPDSGWR-----PRG-----ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR--------KLEK 869 (1249)
Q Consensus 808 ~~~~~s~~~~~~~W~-----~~G-----~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~--------~~~~ 869 (1249)
.+++++.|..+++|. +.| ..+..|..|..+|+++.|+|+|..+|||+++|.|.+|... +...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 556666677899997 223 3577899999999999999999999999999999999766 2000
Q ss_pred --ccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEe
Q 000861 870 --DISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNY 947 (1249)
Q Consensus 870 --~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~f 947 (1249)
...+.......+|...|..++|+|++.++++++.|.++++||+. .|. .+..+..|...+..++ |
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-----~G~--------l~~~~~dh~~yvqgva-w 173 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-----AGQ--------LLAILDDHEHYVQGVA-W 173 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-----cce--------eEeeccccccccceee-c
Confidence 11233455677899999999999999999999999999999998 343 3667778999999998 9
Q ss_pred cCCCCCccEEEEEECCCeEEEEEcCCCccceeee--------cCC---------C----CCceEEEEEcCCCCEEEEEec
Q 000861 948 NTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLK--------AIP---------E----EGYVSSLVTGPCGNWFVSGSS 1006 (1249)
Q Consensus 948 s~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~--------~~~---------h----~~~I~sl~~spdg~~L~sgs~ 1006 (1249)
.|. ++++++-+.|...+.+++...+.+.... ... | ......++|+|+|..+++...
T Consensus 174 Dpl---~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 174 DPL---NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred chh---hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 998 6688888888766666655433322221 000 1 122445789999999987542
Q ss_pred ----CCc-----EEEEeCCC-CCcccccccCCCCCeeEEEEEcC-------CCCCc-ccCCCCCEEEEEECCCeEEEEEC
Q 000861 1007 ----RGV-----LTLWDLRF-LVPVNSWQYSQVCPIEKMCLFVP-------PPNAA-VSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 1007 ----dG~-----I~lWDlr~-~~~l~s~~~~~~~~I~~l~~~sp-------~g~~~-~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
+|. .++++-.. .+++..+.. ...+...+.+ +| -.... ...-.-.++++....+.|.+||.
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~-~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPS-PKKPALAVRF-SPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCC-CCcceEEEEe-eeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 222 34443321 223322221 2223344443 22 11100 00001124555566778999998
Q ss_pred CCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeC
Q 000861 1069 ENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGT 1147 (1249)
Q Consensus 1069 ~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~ 1147 (1249)
++.......... |...++.++|++|| .++..+.
T Consensus 329 q~~~P~~~v~ni----------------------------------------------hy~~iTDiaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 329 QTLEPLAVVDNI----------------------------------------------HYSAITDIAWSDDGSVLLVSST 362 (434)
T ss_pred ccccceEEEeee----------------------------------------------eeeeecceeecCCCcEEEEecc
Confidence 876655554421 22378999999999 9999999
Q ss_pred CCcEEEEeCCCCCcc
Q 000861 1148 DLKIRRWDHCSPGRS 1162 (1249)
Q Consensus 1148 Dg~IriWDl~~~~~~ 1162 (1249)
||...+-.++..+.-
T Consensus 363 DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 363 DGFCSLVTFEPWELG 377 (434)
T ss_pred CCceEEEEEcchhcc
Confidence 999888877766553
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.55 E-value=6.5e-13 Score=159.70 Aligned_cols=272 Identities=17% Similarity=0.181 Sum_probs=182.9
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeee
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKK 934 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l 934 (1249)
++.+.||++..... +...+... ..|+|++|+| +.+.++.|+.+|.|.+||+...... . ..+ .-...
T Consensus 221 ~~~~~vW~~~~p~~-----Pe~~~~~~-s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~---~--~s~--ls~~~ 287 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-----PELVLESP-SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT---P--PSG--LSALE 287 (555)
T ss_pred CceEEEEecCCCCC-----ceEEEecC-CceeEEEeccCCcceEEeeccCceEEEEEccCCCCC---C--Ccc--ccccc
Confidence 35799999987632 44555554 4599999999 6678888999999999999821110 0 000 11223
Q ss_pred cCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-cee--eecC-------CCCCceEEEEEcCC-CCEEEE
Q 000861 935 DTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWT--LKAI-------PEEGYVSSLVTGPC-GNWFVS 1003 (1249)
Q Consensus 935 ~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~--l~~~-------~h~~~I~sl~~spd-g~~L~s 1003 (1249)
..|..+|+.+. |..+.. +.-+++++.||.|..|+++.-.. ... .... .....++++.|.+. -+.+++
T Consensus 288 ~sh~~~v~~vv-W~~~~~-~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 288 VSHSEPVTAVV-WLQNEH-NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccCCcCeEEEE-EeccCC-CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence 34888999998 766532 24699999999999999875432 111 1111 12346899999884 478999
Q ss_pred EecCCcEEE---EeCCCCC----cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCC-CceeE
Q 000861 1004 GSSRGVLTL---WDLRFLV----PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN-GSCHQ 1075 (1249)
Q Consensus 1004 gs~dG~I~l---WDlr~~~----~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t-g~~~~ 1075 (1249)
|+.+|.|.- ++.+... ........|.++|+.+.+ +|-+. .++..++|.++++|.-.. ...+.
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~-nPF~~---------k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR-NPFYP---------KNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeec-CCCcc---------ceeeeeccceeEeccccCCCCcch
Confidence 999999877 3333333 111112247889999999 99887 667777799999998652 11111
Q ss_pred EEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEE
Q 000861 1076 VLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRR 1153 (1249)
Q Consensus 1076 ~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~Iri 1153 (1249)
.+. .+...|.+++|||.. .++++..||.|.+
T Consensus 436 ~~~-----------------------------------------------~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 436 SLD-----------------------------------------------SSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred hhh-----------------------------------------------hccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 111 111258999999988 8899999999999
Q ss_pred EeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCC
Q 000861 1154 WDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQ 1233 (1249)
Q Consensus 1154 WDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg 1233 (1249)
||+.....--+.. ..-+ ..+....+|+++|
T Consensus 469 WDLl~~~~~Pv~s-------------------------------------------------~~~~-~~~l~~~~~s~~g 498 (555)
T KOG1587|consen 469 WDLLQDDEEPVLS-------------------------------------------------QKVC-SPALTRVRWSPNG 498 (555)
T ss_pred hhhhccccCCccc-------------------------------------------------cccc-ccccceeecCCCC
Confidence 9996543311110 0012 3444445588999
Q ss_pred CEEEEEeCCCeEEEcC
Q 000861 1234 RLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1234 ~~LaSgs~DG~IkVWd 1249 (1249)
++|+.|+..|.+.+|+
T Consensus 499 ~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILK 514 (555)
T ss_pred cEEEEecCCCcEEEEE
Confidence 9999999999999985
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.52 E-value=2.5e-13 Score=155.03 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=151.2
Q ss_pred EcCCCCEEEE--EECCCcEEEEECCCCccccccceeeEeec--cCCceEEEEEec-CCCEEEEEeCCCeEEEEEcccccc
Q 000861 843 ISHDHSFFVS--ASDDSTVKVWDSRKLEKDISFRSRLTYHL--EGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISR 917 (1249)
Q Consensus 843 ~spdg~~laT--gs~DgtVkIWD~~~~~~~~~~~~~~t~~~--h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~ 917 (1249)
|+.+..++|. ++.-|.|-||+++...+.- --.+.+ .+..|+.+.|.| |.+.|++|+.||.|++|++...+-
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP----Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP----DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC----cccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 4445556554 4567999999998765321 111111 345799999999 778999999999999999982211
Q ss_pred CCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCC
Q 000861 918 GLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC 997 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd 997 (1249)
. .. ...+-..+..|...|+.+. |+|-. .+.|++++.|.+|++||+++++....+ .+|.+.|.+++|+|+
T Consensus 663 ~----e~--~~tPe~~lt~h~eKI~slR-fHPLA--advLa~asyd~Ti~lWDl~~~~~~~~l--~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 663 P----EN--EMTPEKILTIHGEKITSLR-FHPLA--ADVLAVASYDSTIELWDLANAKLYSRL--VGHTDQIFGIAWSPD 731 (1012)
T ss_pred C----cc--cCCcceeeecccceEEEEE-ecchh--hhHhhhhhccceeeeeehhhhhhhhee--ccCcCceeEEEECCC
Confidence 0 11 1124566778999999999 99986 459999999999999999999887777 569999999999999
Q ss_pred CCEEEEEecCCcEEEEeCCCCC-cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC----CeEEEEECCCC
Q 000861 998 GNWFVSGSSRGVLTLWDLRFLV-PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC----NEVSLWNAENG 1071 (1249)
Q Consensus 998 g~~L~sgs~dG~I~lWDlr~~~-~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D----g~I~vWDl~tg 1071 (1249)
|+.+++.+.||+|++|..|.+. +++.-..+-+..--++.| .-+|. ++++.+.| ..|.+||.++-
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w-acdgr---------~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW-ACDGR---------IVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE-EecCc---------EEEEecccccchhhhhhhhhhhc
Confidence 9999999999999999998764 444433233344456777 66776 67776665 35888887653
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.7e-13 Score=159.37 Aligned_cols=291 Identities=13% Similarity=0.159 Sum_probs=189.3
Q ss_pred CCCCCCCCCccccccCCCCCccC-CCCcEEEEecccc---CceeEEEEcC--CCCEEEEEECCCcEEEEECC-CC-cc--
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHC---SAVNEIAISH--DHSFFVSASDDSTVKVWDSR-KL-EK-- 869 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~---~~V~~la~sp--dg~~laTgs~DgtVkIWD~~-~~-~~-- 869 (1249)
+.|+|.-+.+++...-....+|+ ..|+++..|..+. ..|+.+.+-. |..++.+|+.||.||||+-. .. ++
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 45555554444333123478999 7888888887654 5789998865 44689999999999999643 32 11
Q ss_pred c-cccceeeE-eeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecC-CCCcEEEEEE
Q 000861 870 D-ISFRSRLT-YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT-KEGAIVTLVN 946 (1249)
Q Consensus 870 ~-~~~~~~~t-~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~ 946 (1249)
. ..+.+... ..+..+.=.-+.|.....+|.++|.-..|+|||.+ .+. .+..+.. .+..++++..
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~------~E~-------~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH------KEQ-------VVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc------cce-------eEeecccCCCccceeecc
Confidence 1 11111100 01111111446777766677777778899999998 111 1222221 2334555552
Q ss_pred ecCCCCCccEEEEEECCCeEEEEEcCCCcc---ceeeecCCCCCc--eEEEEEcCCCC-EEEEEecCCcEEEEeCCCCCc
Q 000861 947 YNTDNCASHMFMYSTQNCGIHLWDTRSNSN---TWTLKAIPEEGY--VSSLVTGPCGN-WFVSGSSRGVLTLWDLRFLVP 1020 (1249)
Q Consensus 947 fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~---~~~l~~~~h~~~--I~sl~~spdg~-~L~sgs~dG~I~lWDlr~~~~ 1020 (1249)
.... |+.+++|..||.|++||.|.... +... ..|... |..+.+.+.|. .|++|+.+|.|++||+|....
T Consensus 1217 ~~~~---gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~--R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1217 DLVH---GNIIAAGFADGSVRVYDRRMAPPDSLVCVY--REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred cccC---CceEEEeecCCceEEeecccCCccccceee--cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 3333 67999999999999999997543 2223 345555 99999999774 599999999999999997522
Q ss_pred ccccccC----CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCccccccccc
Q 000861 1021 VNSWQYS----QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFA 1096 (1249)
Q Consensus 1021 l~s~~~~----~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~ 1096 (1249)
...+... .++..+++.. |+... .+++|+. +.|+||++. |+.+..++...+-
T Consensus 1292 e~~~~iv~~~~yGs~lTal~V-H~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F------------- 1346 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTV-HEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGF------------- 1346 (1387)
T ss_pred cccceeeeccccCccceeeee-ccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCccc-------------
Confidence 2211110 1335889998 88876 6677666 999999986 5555555521110
Q ss_pred CCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCC
Q 000861 1097 RPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1097 ~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
.......+.|++|+|.. .+++|+.|.+|.+|....+.
T Consensus 1347 ---------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 ---------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ---------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 01112367899999999 89999999999999887654
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=1.5e-11 Score=134.41 Aligned_cols=239 Identities=16% Similarity=0.248 Sum_probs=178.1
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeec--cCCceEEEEEecCCCEEEEEeCCC--eEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL--EGSRALCTMMLRHSAQVVVGACDG--IIHM 909 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~--h~~~V~sl~fspdg~~Lasgs~Dg--~I~v 909 (1249)
....++.+.|+.|...|..|+.|| -+++....-++ .+.. .+..|.-+-|+ ...+|..+.+. .+++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--------~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv 72 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--------CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKV 72 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHH--------hhcccCCCeEEEEeecc--cceeEEEecCCCceEEE
Confidence 345678888999999999999987 47787776543 1111 12234445554 44566555443 3777
Q ss_pred EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecC-CCCCc
Q 000861 910 FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI-PEEGY 988 (1249)
Q Consensus 910 wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~-~h~~~ 988 (1249)
++... + ..+..+. ...+|.++. ++.. .|+++-.+. |+|||+++++.+.++... ++...
T Consensus 73 ~~~Kk-----~--------~~ICe~~-fpt~IL~Vr-mNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 73 VHFKK-----K--------TTICEIF-FPTSILAVR-MNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred EEccc-----C--------ceEEEEe-cCCceEEEE-Eccc-----eEEEEEccc-EEEEecccceeehhhhccCCCccc
Confidence 77661 1 1222222 345678887 7655 666666554 999999999999988654 56667
Q ss_pred eEEEEEcCCCCEEEEE--ecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe-EEE
Q 000861 989 VSSLVTGPCGNWFVSG--SSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE-VSL 1065 (1249)
Q Consensus 989 I~sl~~spdg~~L~sg--s~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~-I~v 1065 (1249)
+.++.+++.+.+++.- ...|.|.+||..+-+++..+. .|.+++-+++| +++|. ++++++..|+ |+|
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalaf-s~~G~---------llATASeKGTVIRV 200 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAF-SPDGT---------LLATASEKGTVIRV 200 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEE-CCCCC---------EEEEeccCceEEEE
Confidence 8888888888888863 346899999999999998887 69999999999 99998 9999999997 899
Q ss_pred EECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEE
Q 000861 1066 WNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLT 1144 (1249)
Q Consensus 1066 WDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~t 1144 (1249)
+.+.+|+....|+.... ...|.+++|+|++ +|++
T Consensus 201 f~v~~G~kl~eFRRG~~---------------------------------------------~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTY---------------------------------------------PVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEcCCccEeeeeeCCce---------------------------------------------eeEEEEEEECCCCCeEEE
Confidence 99999999998883211 1178999999999 9999
Q ss_pred EeCCCcEEEEeCCCCC
Q 000861 1145 GGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1145 gs~Dg~IriWDl~~~~ 1160 (1249)
.|..++|.+|.+....
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999997654
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=6.2e-13 Score=140.43 Aligned_cols=215 Identities=12% Similarity=0.184 Sum_probs=161.2
Q ss_pred ccccCceeEEEEcCCC-----CEEEEEECCCcEEEEECCCCccccccceee---EeeccCCceEEEEEec-CCCEEEEEe
Q 000861 832 QEHCSAVNEIAISHDH-----SFFVSASDDSTVKVWDSRKLEKDISFRSRL---TYHLEGSRALCTMMLR-HSAQVVVGA 902 (1249)
Q Consensus 832 ~~H~~~V~~la~spdg-----~~laTgs~DgtVkIWD~~~~~~~~~~~~~~---t~~~h~~~V~sl~fsp-dg~~Lasgs 902 (1249)
..|.-+++.+.|.|+. .+|||+++ .+|+|.+...+.....++.+ .-..+..++++..|.. +.+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999986 36777654 89999988544322221111 2233567899999988 678999999
Q ss_pred CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceee-e
Q 000861 903 CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTL-K 981 (1249)
Q Consensus 903 ~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l-~ 981 (1249)
-|-+..|||++ .+ ..|. .-..+-.|..+|..++ |..++ .+++++.+.||.|++||+|.-+....+ +
T Consensus 171 iDTTCTiWdie-~~-~~~~--------vkTQLIAHDKEV~DIa-f~~~s--~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 171 IDTTCTIWDIE-TG-VSGT--------VKTQLIAHDKEVYDIA-FLKGS--RDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccCeEEEEEEe-ec-cccc--------eeeEEEecCcceeEEE-eccCc--cceEEEecCCCcEEEEEecccccceEEec
Confidence 99999999999 21 0111 1234566999999999 98875 459999999999999999987664433 2
Q ss_pred cCCCCCceEEEEEcCC-CCEEEEEecC-CcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 982 AIPEEGYVSSLVTGPC-GNWFVSGSSR-GVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 982 ~~~h~~~I~sl~~spd-g~~L~sgs~d-G~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
.+....+...++|++. -+++++-..| ..|.+.|+|.. .++..++ +|.+.|+.++| .|... ..|++|+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaW-aPhS~--------~hictaG 307 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAW-APHSS--------SHICTAG 307 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEe-cCCCC--------ceeeecC
Confidence 2222677888999984 4788875554 46999999964 4566655 69999999999 88765 5899999
Q ss_pred CCCeEEEEECCCC
Q 000861 1059 GCNEVSLWNAENG 1071 (1249)
Q Consensus 1059 ~Dg~I~vWDl~tg 1071 (1249)
.|..+.+||+...
T Consensus 308 DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 308 DDCQALIWDLQQM 320 (364)
T ss_pred CcceEEEEecccc
Confidence 9999999999754
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=1.2e-11 Score=132.70 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=169.6
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEE
Q 000861 829 AHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIH 908 (1249)
Q Consensus 829 ~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~ 908 (1249)
..++--..+|+|.+|++|+..+|.+-....|.||....... +....++..|...|++++|.|..+.|++|+.|..-+
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 44544568999999999999999999999999999877652 235668889999999999999999999999999999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeee--cCCCC
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLK--AIPEE 986 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~--~~~h~ 986 (1249)
+|..... ++- .+.-.+..+.+.++++. |+|. ++.+++|+....|.+|-.+....-|.-+ ..++.
T Consensus 81 Vw~~~~~----~~W------kptlvLlRiNrAAt~V~-WsP~---enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 81 VWTQPSG----GTW------KPTLVLLRINRAATCVK-WSPK---ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ccccCCC----Cee------ccceeEEEeccceeeEe-ecCc---CceEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 9998411 111 12223334678899998 9999 7899999999999999887655433221 24567
Q ss_pred CceEEEEEcCCCCEEEEEecCCcEEEEeCC------------------CCCcccccccCCCCCeeEEEEEcCCCCCcccC
Q 000861 987 GYVSSLVTGPCGNWFVSGSSRGVLTLWDLR------------------FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVST 1048 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~dG~I~lWDlr------------------~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~ 1048 (1249)
+.|+++.|+|++-+|++|+.|+..+++..- +|+.+..+. ...+.|.++.| +|.|.
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~f-s~sG~----- 219 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLF-SPSGN----- 219 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEe-CCCCC-----
Confidence 899999999999999999999999998641 233344443 35678999999 99998
Q ss_pred CCCCEEEEEECCCeEEEEECCCCc
Q 000861 1049 TARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 1049 ~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
.|+-.+.|..+.+-|.....
T Consensus 220 ----~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 ----RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ----EeeEecCCCceEEeecCCCc
Confidence 88888999999999876543
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5e-13 Score=148.58 Aligned_cols=201 Identities=16% Similarity=0.215 Sum_probs=146.9
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccC
Q 000861 839 NEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRG 918 (1249)
Q Consensus 839 ~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~ 918 (1249)
.+++|+++|..+++|+.||++|||++..... ......|.+.|.++.|+|||+.|++-+.| ..+||+++ .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~--- 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-T--- 216 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-c---
Confidence 7899999999999999999999999887763 44566788889999999999999999999 89999998 2
Q ss_pred CCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEE--ECCCeEEEEEcCCCcc---ceeeecCCCCCceEEE
Q 000861 919 LGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYS--TQNCGIHLWDTRSNSN---TWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 919 ~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sg--s~dg~I~iwDlrt~~~---~~~l~~~~h~~~I~sl 992 (1249)
|.. +.... .........+.|..++....+.+.+ ...+.|..||+..... ....+.......|+++
T Consensus 217 -g~~--------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 217 -GAA--------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred -Cch--------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 211 11111 1122222322376663111122222 2345666666643322 1111112234589999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+++++|++++.|+.||.|-+++...-+.++-.+..|..-|+.+.| +|+.+ ++...+.+.+..|..+.
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF-~Pdsr---------~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF-SPDSR---------YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE-cCCcC---------cccccccCCceeEEEEe
Confidence 999999999999999999999999988888888889999999999 99988 77778888888777664
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=5.5e-11 Score=138.99 Aligned_cols=270 Identities=11% Similarity=0.091 Sum_probs=169.1
Q ss_pred CCCCCccCC--CCc--EEEEeccccCceeEEEEcCCCCEEEEE-ECCCcEEEEECCCCccccccceeeEeeccCCceEEE
Q 000861 815 SIPDSGWRP--RGI--LVAHLQEHCSAVNEIAISHDHSFFVSA-SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCT 889 (1249)
Q Consensus 815 ~~~~~~W~~--~G~--lv~~L~~H~~~V~~la~spdg~~laTg-s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl 889 (1249)
+....+|+. +|+ ++.++. +.+....++++|++++|+.+ ..++.|.+|++...... ....... ..+....+
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---TFAAESP-LPGSPTHI 85 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---EEeeeec-CCCCceEE
Confidence 455677873 354 566665 34667889999999987665 45889999999732111 0111111 22346789
Q ss_pred EEecCCCEEEEEeC-CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEE-EECCCeEE
Q 000861 890 MMLRHSAQVVVGAC-DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY-STQNCGIH 967 (1249)
Q Consensus 890 ~fspdg~~Lasgs~-Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s-gs~dg~I~ 967 (1249)
+|+|+++.+++++. ++.|.+|+++.. +.+. ..+.... +...+.++. ++|+ ++++++ ...++.|.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~----g~~~-----~~~~~~~-~~~~~~~~~-~~p~---g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKD----GIPV-----APIQIIE-GLEGCHSAN-IDPD---NRTLWVPCLKEDRIR 151 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCC----CCCC-----Cceeecc-CCCcccEeE-eCCC---CCEEEEeeCCCCEEE
Confidence 99999999888764 789999999721 1110 0111121 123355666 8998 566654 45569999
Q ss_pred EEEcCCCccce-----eeecCCCCCceEEEEEcCCCCEEEEEec-CCcEEEEeCCC--CC--ccccccc-C----CCCCe
Q 000861 968 LWDTRSNSNTW-----TLKAIPEEGYVSSLVTGPCGNWFVSGSS-RGVLTLWDLRF--LV--PVNSWQY-S----QVCPI 1032 (1249)
Q Consensus 968 iwDlrt~~~~~-----~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG~I~lWDlr~--~~--~l~s~~~-~----~~~~I 1032 (1249)
+||+.+...+. ..... .......++|+|+|+++++++. ++.|.+||+.. +. .+..+.. + +....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 99998743221 11111 2345678999999999988876 89999999973 22 2222211 1 11122
Q ss_pred eEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccc
Q 000861 1033 EKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRN 1111 (1249)
Q Consensus 1033 ~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~ 1111 (1249)
..+.+ +|+++ +++++.. ++.|.+|++........+......
T Consensus 231 ~~i~~-~pdg~---------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---------------------------- 272 (330)
T PRK11028 231 ADIHI-TPDGR---------HLYACDRTASLISVFSVSEDGSVLSFEGHQPT---------------------------- 272 (330)
T ss_pred eeEEE-CCCCC---------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----------------------------
Confidence 35778 99988 8888854 789999998653221122110000
Q ss_pred ccccccccccCCCCCCCCCeEEEeecCCC-eEEEEe-CCCcEEEEeCCC
Q 000861 1112 VNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGG-TDLKIRRWDHCS 1158 (1249)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs-~Dg~IriWDl~~ 1158 (1249)
+ ...+.+.++||| +|++++ .+++|.+|++..
T Consensus 273 --------------~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 273 --------------E--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --------------c--ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 0 034567899999 666555 589999998854
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=6.3e-12 Score=151.97 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=158.7
Q ss_pred CCCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEEec
Q 000861 817 PDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR 893 (1249)
Q Consensus 817 ~~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp 893 (1249)
...+|+.+|.....+..|...|.+.+|+|||+.++.++.+ ..|.+||+.+++.. ....+.+| ..+++|+|
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~----~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK----VVASFRGH---NGAPAFSP 257 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE----EEecCCCc---cCceeECC
Confidence 4567888887778889999999999999999999888754 36999999877521 11122333 44789999
Q ss_pred CCCEEEEEe-CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEEEEEc
Q 000861 894 HSAQVVVGA-CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIHLWDT 971 (1249)
Q Consensus 894 dg~~Lasgs-~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~iwDl 971 (1249)
||+.|+.++ .+|.+.||.++.. .+. ++.+..+.+.+.... |+|+ |+.+++++ .+|...+|++
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~---~~~---------~~~lt~~~~~~~~~~-wSpD---G~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGAN---GGT---------PSQLTSGAGNNTEPS-WSPD---GQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECC---CCC---------eEeeccCCCCcCCEE-ECCC---CCEEEEEECCCCCceEEEE
Confidence 999888764 6888777766511 111 334444555666777 9999 66666554 5788888877
Q ss_pred CCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCC
Q 000861 972 RSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTAR 1051 (1249)
Q Consensus 972 rt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~ 1051 (1249)
.......... .+.+ .+..|+|+|++++.++.++ +.+||+.++....... .. ....+.| +|+|.
T Consensus 322 ~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~-sPdG~-------- 384 (429)
T PRK01742 322 SASGGGASLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSI-SPNGI-------- 384 (429)
T ss_pred ECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceE-CCCCC--------
Confidence 5432221221 1233 4578999999998887765 5569998876543211 11 2356778 99998
Q ss_pred CEEEEEECCCeEEEEEC--CCCceeEEEecccCCCCCCcccccccc
Q 000861 1052 PLIYVAAGCNEVSLWNA--ENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1052 ~~l~t~s~Dg~I~vWDl--~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
+|+.++.++.+.+|++ .+|.+.+.+..+. ..+....|+|
T Consensus 385 -~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~----g~~~~p~wsp 425 (429)
T PRK01742 385 -MIIYSSTQGLGKVLQLVSADGRFKARLPGSD----GQVKFPAWSP 425 (429)
T ss_pred -EEEEEEcCCCceEEEEEECCCCceEEccCCC----CCCCCcccCC
Confidence 8999888888888775 3577777776432 2455566765
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=148.71 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCccccccCCCCCccCCCC-----cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 000861 798 ASSPADLTGLPSFVRTSSIPDSGWRPRG-----ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDIS 872 (1249)
Q Consensus 798 ~~~~~s~~G~~~~~~s~~~~~~~W~~~G-----~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~ 872 (1249)
....++|.|..++++..++...+|+.-| .-...|+-|.+.|++++|+++|.+|.|||..|.+-+|...++++
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--- 285 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--- 285 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc---
Confidence 3678899999988887777788999544 34567889999999999999999999999999999999999873
Q ss_pred cceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccce-eeec-CCCCcEEEEEEecCC
Q 000861 873 FRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDI-KKKD-TKEGAIVTLVNYNTD 950 (1249)
Q Consensus 873 ~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i-~~l~-~h~~~V~~l~~fs~d 950 (1249)
.-++.-++.|..+.++||+...+....|..|++........ . ....|.... ...+ ...+-.+.++ ++|.
T Consensus 286 ----qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~-k---~tIsgi~~~~~~~k~~~~~l~t~~~-idpr 356 (792)
T KOG1963|consen 286 ----QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI-K---STISGIKPPTPSTKTRPQSLTTGVS-IDPR 356 (792)
T ss_pred ----ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh-h---hhccCccCCCccccccccccceeEE-EcCC
Confidence 23445577899999999999999999999999988741110 0 111221111 0001 1233344555 8885
Q ss_pred CCCccEEEEEECCCeEEEEEcCCCccceeeecC---------CCCCceEEEEEcCCCCEEEEEec--------CC--cEE
Q 000861 951 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI---------PEEGYVSSLVTGPCGNWFVSGSS--------RG--VLT 1011 (1249)
Q Consensus 951 ~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~---------~h~~~I~sl~~spdg~~L~sgs~--------dG--~I~ 1011 (1249)
.+.++..+..|.|.+||+-+.+.++.+... .+.-.+++++.+..|.|++|+-. || .++
T Consensus 357 ---~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 357 ---TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred ---CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 457888999999999999988777666431 12335788888888999998643 33 478
Q ss_pred EEeCCCCC----cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCC
Q 000861 1012 LWDLRFLV----PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTE 1087 (1249)
Q Consensus 1012 lWDlr~~~----~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~ 1087 (1249)
+|-..... ....+..+|+..+...+++++... ...++++.||.+++|-+...+....-. .
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--------~~~vta~~dg~~KiW~~~~~~n~~k~~--------s 497 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--------VRCVTASVDGDFKIWVFTDDSNIYKKS--------S 497 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--------ceeEEeccCCeEEEEEEecccccCcCc--------c
Confidence 88664322 233345578888777777333332 267899999999999885432211000 0
Q ss_pred cccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCC
Q 000861 1088 MSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1088 i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~ 1159 (1249)
.+... .+ ..-|...+.+++|+.||.+++.|.|++|.+||..+.
T Consensus 498 ~W~c~---------------------------~i--~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 498 NWTCK---------------------------AI--GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ceEEe---------------------------ee--eccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 00000 00 001233788999999998888999999999999884
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=160.54 Aligned_cols=238 Identities=11% Similarity=0.143 Sum_probs=178.8
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
...|...|..++.++.+.-.++|. .++.+++...||.+.|+.++.+.++.+++++|.|..|++|.+.++. +..
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~------pvs 268 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA------PVS 268 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc------hHH
Confidence 455788899999988777899999 7899999999999999999999999999999999999999999988 456
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCC-CcEEEEEEecCCCCCccE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKE-GAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~-~~V~~l~~fs~d~~~g~~ 956 (1249)
.+.+|.+.|++++|+|-. +.+.||++++||.+... ..|. -+..+..+ .-+.++. |... +.-
T Consensus 269 vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~------~~y~----prp~~~~~~~~~~s~~-~~~~---~~~ 330 (1113)
T KOG0644|consen 269 VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP------RIYV----PRPLKFTEKDLVDSIL-FENN---GDR 330 (1113)
T ss_pred HHhccccceeeeccCccc----cCCCCCceEeccccccc------cccC----CCCCCcccccceeeee-cccc---ccc
Confidence 788999999999999954 77889999999987111 1111 11112222 2344444 6666 668
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCC-CCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC-GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd-g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
+++++.++.-..|.+..-.. +...+.-+..+.+ ..+.+++-.+-.+++|++-+|....... +|...+..+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvL 401 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVL 401 (1113)
T ss_pred cccccCCcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeee
Confidence 89999999888776543211 1111111111111 2466677778889999999998887754 688899999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.+ ||-.. .....++.||...|||+-.|...+.+.
T Consensus 402 d~-Hpfn~--------ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 402 DV-HPFNP--------RIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred ee-cCCCc--------HhhhhccCCCceEeeecccCCcceeee
Confidence 99 98765 345677889999999999998887776
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.8e-11 Score=136.36 Aligned_cols=200 Identities=18% Similarity=0.141 Sum_probs=142.5
Q ss_pred EEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcc
Q 000861 942 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPV 1021 (1249)
Q Consensus 942 ~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l 1021 (1249)
.+++ |+.+ |..+++++.||.+++|+...+..+... ..|++.|.++.|+|||..|++-+.| ..++||.+++.++
T Consensus 148 k~va-f~~~---gs~latgg~dg~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVA-FNGD---GSKLATGGTDGTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEE-EcCC---CCEeeeccccceEEEEecCcchhhhhh--HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 4555 8888 779999999999999998777665444 5589999999999999999999999 9999999999777
Q ss_pred ccccc-CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCC
Q 000861 1022 NSWQY-SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPS 1099 (1249)
Q Consensus 1022 ~s~~~-~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~ 1099 (1249)
..... ........+.| ..++. ...-++++... .+.|..||+...+.-..++.
T Consensus 221 a~~t~~~k~~~~~~cRF-~~d~~-----~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~-------------------- 274 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRF-SVDNA-----QETLRLAASQFPGGGVRLCDISLWSGSNFLRL-------------------- 274 (398)
T ss_pred hhcCCcccchhhhhcee-cccCC-----CceEEEEEecCCCCceeEEEeeeeccccccch--------------------
Confidence 76542 22234455666 55542 01112333322 34577776643221111110
Q ss_pred CCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCCCCCCCCCcc
Q 000861 1100 SRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEF 1178 (1249)
Q Consensus 1100 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~~~~~~~~~~ 1178 (1249)
.........|.+++.++|| +++.|+.||.|-+++..+.+..+.+.
T Consensus 275 ----------------------~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk------------ 320 (398)
T KOG0771|consen 275 ----------------------RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK------------ 320 (398)
T ss_pred ----------------------hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh------------
Confidence 0011222389999999999 99999999999999998877655442
Q ss_pred eeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEE
Q 000861 1179 YETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKV 1247 (1249)
Q Consensus 1179 y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkV 1247 (1249)
+.|...|+.++ |+|+.+++++.+.|..+.|
T Consensus 321 --------------------------------------~aH~~~VT~lt-F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 321 --------------------------------------EAHLGFVTGLT-FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred --------------------------------------hhheeeeeeEE-EcCCcCcccccccCCceeE
Confidence 26888899999 8899888888887776654
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=134.17 Aligned_cols=274 Identities=12% Similarity=0.114 Sum_probs=179.2
Q ss_pred cccccCCCCCccC-CCCcEEEEec-cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE
Q 000861 810 FVRTSSIPDSGWR-PRGILVAHLQ-EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL 887 (1249)
Q Consensus 810 ~~~s~~~~~~~W~-~~G~lv~~L~-~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~ 887 (1249)
+++.......+|. .+.+.+-++. .|+..|+.+..-|+ ..+.|-+.|+.+.+|++.-.. ....|+-.+.
T Consensus 29 ~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~---------~i~i~Si~~n 98 (323)
T KOG0322|consen 29 MSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA---------FISIHSIVVN 98 (323)
T ss_pred hcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc---------eEEEeeeecc
Confidence 3333345578899 4455666777 56789999999997 468889999999999998743 2233444566
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCcc--ceeee----cCCCCcEEEEEEecCCCCCccEEEEEE
Q 000861 888 CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGIS--DIKKK----DTKEGAIVTLVNYNTDNCASHMFMYST 961 (1249)
Q Consensus 888 sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~--~i~~l----~~h~~~V~~l~~fs~d~~~g~~L~sgs 961 (1249)
++.|++.. +...+. ...|-..+.+++...+.+..+.. .++.. ....+.+++.. +..+-.+.-++++|.
T Consensus 99 slgFCrfS--l~~~~k---~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~-~~~~c~s~~lllaGy 172 (323)
T KOG0322|consen 99 SLGFCRFS--LVKKPK---NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD-KDHACGSTFLLLAGY 172 (323)
T ss_pred ccccccce--eccCCC---cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee-ccccccceEEEEEec
Confidence 66666521 111111 11222211111111110001100 11111 12446677766 433322234677788
Q ss_pred CCCeEEEEEcCCCccceee--------ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC--C-cccccccCCCC
Q 000861 962 QNCGIHLWDTRSNSNTWTL--------KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL--V-PVNSWQYSQVC 1030 (1249)
Q Consensus 962 ~dg~I~iwDlrt~~~~~~l--------~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~--~-~l~s~~~~~~~ 1030 (1249)
.+|.+.+||+.++..+-.+ ....|.++|.++.+.+.-..=++|+.+..+..|.+... . .+.....-...
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 8999999999987433222 22458899999999986666678888889999998643 2 12211111234
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccc
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRR 1110 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~ 1110 (1249)
.|..+.. -||++ .+++++.|+.|+||+.++++.+.++..|..
T Consensus 253 Gv~gvrI-RpD~K---------IlATAGWD~RiRVyswrtl~pLAVLkyHsa---------------------------- 294 (323)
T KOG0322|consen 253 GVSGVRI-RPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLKYHSA---------------------------- 294 (323)
T ss_pred CccceEE-ccCCc---------EEeecccCCcEEEEEeccCCchhhhhhhhc----------------------------
Confidence 5777888 89998 999999999999999999988888774432
Q ss_pred cccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeC
Q 000861 1111 NVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl 1156 (1249)
+|.+++|+||. .++++|.|++|-+|++
T Consensus 295 -------------------gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -------------------GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------------------ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 89999999996 9999999999999986
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.5e-11 Score=132.15 Aligned_cols=304 Identities=11% Similarity=0.089 Sum_probs=203.8
Q ss_pred CCCCCCCCCCccccccCCCCCccCCC-------CcEEEEecc-ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWRPR-------GILVAHLQE-HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKD 870 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~~~-------G~lv~~L~~-H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~ 870 (1249)
+++|+.+|..+++++.+....+|+.. -++|..... |+..|.|++|...++++.+|+.+|+|...|+.+.+.
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs- 139 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS- 139 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccccee-
Confidence 67889999999998877778999832 356665554 458999999999999999999999999999998773
Q ss_pred cccceeeEeeccC---CceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEe
Q 000861 871 ISFRSRLTYHLEG---SRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNY 947 (1249)
Q Consensus 871 ~~~~~~~t~~~h~---~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~f 947 (1249)
. -...|. +.|+.+..+|..+.|++.+.+|.|.+||+. .....+.+ +. ..........+. |
T Consensus 140 -----i-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R-d~~~~~~~--------~~-~AN~~~~F~t~~-F 202 (609)
T KOG4227|consen 140 -----I-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR-DRQNPISL--------VL-PANSGKNFYTAE-F 202 (609)
T ss_pred -----e-eeecccCcccceeecccCCCCceEEEEecCceEEEEecc-CCCCCCce--------ee-ecCCCccceeee-e
Confidence 2 222333 489999999999999999999999999998 22211211 11 111223345555 9
Q ss_pred cCCCCCccEEEEEECCCeEEEEEcCCCcc-ceee----ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCc-c
Q 000861 948 NTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTL----KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVP-V 1021 (1249)
Q Consensus 948 s~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l----~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~-l 1021 (1249)
+|..+- +|++.+..+.+.+||.|.... +... ..+.....-.++.|+|+|+.|++--....-.+||+-..++ +
T Consensus 203 ~P~~P~--Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 203 HPETPA--LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred cCCCce--eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 998643 889999999999999987543 1111 1111122235678999999998877777778889876443 3
Q ss_pred cccccCC-----CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCccccccccc
Q 000861 1022 NSWQYSQ-----VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFA 1096 (1249)
Q Consensus 1022 ~s~~~~~-----~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~ 1096 (1249)
..+.+.. .+.+.+++| .-+. .+++|+.+-.|++|.+.......-+... ++....+.
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F-~~D~----------~v~tGSD~~~i~~WklP~~~ds~G~~~I-G~~~~~~~------- 341 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTF-IDDY----------TVATGSDHWGIHIWKLPRANDSYGFTQI-GHDEEEMP------- 341 (609)
T ss_pred EeccCCCCcceeeeeeeeeee-ecce----------eeeccCcccceEEEecCCCccccCcccc-CcchhhCc-------
Confidence 3322111 235667777 4443 4888888889999988643211111100 11110000
Q ss_pred CCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC
Q 000861 1097 RPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1097 ~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~ 1157 (1249)
...+--..+....+|..-+..+.|+|.. .|++.|-...+++|.-.
T Consensus 342 ----------------~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 342 ----------------SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ----------------hhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 0011112233446777788999999988 88888999999999753
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=2.3e-10 Score=125.44 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=169.8
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC-
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN- 963 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d- 963 (1249)
.+..+.|..+...|..|+.|| .++|+.+... + ..........|..+. |+.. +++..+.+
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~----k---------~~~~~~~~~~IvEmL-FSSS-----LvaiV~~~q 66 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE----K---------CFSKDTEGVSIVEML-FSSS-----LVAIVSIKQ 66 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchH----H---------hhcccCCCeEEEEee-cccc-----eeEEEecCC
Confidence 466677988988999999999 5788876211 1 111112334566676 8776 77666654
Q ss_pred -CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC--CCCCeeEEEEEcC
Q 000861 964 -CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS--QVCPIEKMCLFVP 1040 (1249)
Q Consensus 964 -g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~--~~~~I~~l~~~sp 1040 (1249)
..+++++.+.+..+..+.. ...|.++.++.+ .|++.=.+ .|+|||+++.+.+.++..- +...+.++.+ ++
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~-n~ 139 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFF---PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSP-NN 139 (391)
T ss_pred CceEEEEEcccCceEEEEec---CCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeecc-CC
Confidence 3599999998887777765 567888888754 45555444 4999999999998887643 4444555555 44
Q ss_pred CCCCcccCCCCCEEEEEE--CCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAA--GCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRV 1118 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s--~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~ 1118 (1249)
.+. +++--+ ..|.|.+||..+-+....+..|.+
T Consensus 140 ~n~---------ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~------------------------------------ 174 (391)
T KOG2110|consen 140 ANC---------YLAYPGSTTSGDVVLFDTINLQPVNTINAHKG------------------------------------ 174 (391)
T ss_pred CCc---------eEEecCCCCCceEEEEEcccceeeeEEEecCC------------------------------------
Confidence 443 555433 258999999998888777775443
Q ss_pred cccCCCCCCCCCeEEEeecCCC-eEEEEeCCCc-EEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccC
Q 000861 1119 DELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLK-IRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQ 1196 (1249)
Q Consensus 1119 ~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~-IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~ 1196 (1249)
.+-|++|+++| .|+|+++.|+ ||++.+.+++.++.+.-..
T Consensus 175 -----------~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--------------------------- 216 (391)
T KOG2110|consen 175 -----------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--------------------------- 216 (391)
T ss_pred -----------ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------------------
Confidence 78999999999 9999999886 5999999999988875321
Q ss_pred CccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1197 PLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
-.-.|.+++ |++++.+|++.|..++|+||+
T Consensus 217 ----------------------~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 217 ----------------------YPVSIYSLS-FSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----------------------eeeEEEEEE-ECCCCCeEEEecCCCeEEEEE
Confidence 124588999 999999999999999999985
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.34 E-value=5.5e-11 Score=127.81 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=157.5
Q ss_pred CCCCCCCccccccCCCCCccCCC----CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee
Q 000861 802 ADLTGLPSFVRTSSIPDSGWRPR----GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 877 (1249)
Q Consensus 802 ~s~~G~~~~~~s~~~~~~~W~~~----G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~ 877 (1249)
++.|+..++.........+.... =++.++|++|...|++|.|+|..+.|+||+.|..-.||....+. ++++.+
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~---~Wkptl 94 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG---TWKPTL 94 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC---eeccce
Confidence 44455544444333333333311 14578999999999999999999999999999999999984332 345667
Q ss_pred EeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccc-eeeecCCCCcEEEEEEecCCCCCccE
Q 000861 878 TYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISD-IKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 878 t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~-i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.+..+...++++.|+|.++.||+|+....|.||-.+ ++- ..-. -+.-+.+...|+++. |+|+ +-+
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E------~EN----dWWVsKhikkPirStv~sld-Whpn---nVL 160 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE------QEN----DWWVSKHIKKPIRSTVTSLD-WHPN---NVL 160 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEe------ccc----ceehhhhhCCccccceeeee-ccCC---cce
Confidence 777888899999999999999999999999999988 221 0000 011123567899999 9999 568
Q ss_pred EEEEECCCeEEEEEcC-----C-------------CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q 000861 957 FMYSTQNCGIHLWDTR-----S-------------NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL 1018 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlr-----t-------------~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~ 1018 (1249)
+++|+.|+..+++..- . |+....+ ....+.+..+.|+|+|..|+-.+.|+.+.+-|....
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 8999999999888542 1 1111111 245789999999999999999999999999998655
Q ss_pred C-cccccccCCCCCeeEEEEEcCCC
Q 000861 1019 V-PVNSWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 1019 ~-~l~s~~~~~~~~I~~l~~~sp~g 1042 (1249)
. .+.+....+ -|..++.| -.+.
T Consensus 239 ~~~v~~~~~~~-lP~ls~~~-ise~ 261 (361)
T KOG1523|consen 239 SERVQSVATAQ-LPLLSVSW-ISEN 261 (361)
T ss_pred chhccchhhcc-CCceeeEe-ecCC
Confidence 4 344433333 57778888 4433
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=135.87 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=139.9
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEe--eccCCceEEEEEecCCCEEEEEeCCCeEEEE
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY--HLEGSRALCTMMLRHSAQVVVGACDGIIHMF 910 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~--~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vw 910 (1249)
-|...|.|+.|+.+...+.+++++..++-||+.+.+......+.--+ ..|-++ .+..=-.....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEEe
Confidence 46667789999988777766666666666666554321111000000 001000 000000123578899999999988
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceE
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS 990 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~ 990 (1249)
+-. +++ -+....|.+.+.+-. |+|+ |.-|++++.||.|++|.-..+ ...++. .....|+
T Consensus 91 ~k~------~rV--------E~sv~AH~~A~~~gR-W~~d---GtgLlt~GEDG~iKiWSrsGM-LRStl~--Q~~~~v~ 149 (737)
T KOG1524|consen 91 NKS------ARV--------ERSISAHAAAISSGR-WSPD---GAGLLTAGEDGVIKIWSRSGM-LRSTVV--QNEESIR 149 (737)
T ss_pred ccc------chh--------hhhhhhhhhhhhhcc-cCCC---CceeeeecCCceEEEEeccch-HHHHHh--hcCceeE
Confidence 765 443 455677999999988 9999 789999999999999985433 333332 2367899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 991 SLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 991 sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
|++|.|+.+-++.+ ..|.+.+=-+..+..+-.|+ .|.+-|.++.| ++..+ ++++|++|-..++||..
T Consensus 150 c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W-~~~s~---------lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 150 CARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWR-AHDGLVLSLSW-STQSN---------IIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEECCCCCceEEe-cCCeEEEeecccccceeEEe-ccCcEEEEeec-Ccccc---------ceeecCCceeEEeeccc
Confidence 99999988665544 34577777777777777787 49999999999 88887 89999999999999975
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=140.07 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=149.1
Q ss_pred CccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEE
Q 000861 819 SGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQV 898 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~L 898 (1249)
.+-+..|+.-.....|.++|.|-.|+|||.-|+|++.||.||+|.-..+- +.++-....+|.|++|.|+.+.+
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-------RStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-------RSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-------HHHHhhcCceeEEEEECCCCCce
Confidence 34445666677788999999999999999999999999999999976653 23444556789999999988766
Q ss_pred EEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccce
Q 000861 899 VVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTW 978 (1249)
Q Consensus 899 asgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~ 978 (1249)
+-+.. +.+.+=.+. ....+-.++.|.|-|.++. |++. .+.+++|+.|...++||.. |..++
T Consensus 161 l~c~g-~h~~IKpL~-------------~n~k~i~WkAHDGiiL~~~-W~~~---s~lI~sgGED~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 161 VFCQG-GHISIKPLA-------------ANSKIIRWRAHDGLVLSLS-WSTQ---SNIIASGGEDFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEecC-CeEEEeecc-------------cccceeEEeccCcEEEEee-cCcc---ccceeecCCceeEEeeccc-Ccccc
Confidence 65433 445554443 1123567889999999999 9998 6799999999999999974 45554
Q ss_pred eeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 979 TLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 979 ~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
.- ..|..+|++++|.|+ ..++.|+.+ +++ +..+..+.|..+.| ++||. .+.+|+
T Consensus 222 ~S--~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifnlsW-S~DGT---------Q~a~gt 275 (737)
T KOG1524|consen 222 TS--AAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFNLSW-SADGT---------QATCGT 275 (737)
T ss_pred cC--Chhccceeeeeeccc-cceeeeeee-eee------------ecCCCccceEEEEE-cCCCc---------eeeccc
Confidence 44 568899999999999 566666543 333 34456678999999 99998 777777
Q ss_pred CCCeEEE
Q 000861 1059 GCNEVSL 1065 (1249)
Q Consensus 1059 ~Dg~I~v 1065 (1249)
+.|.+.+
T Consensus 276 ~~G~v~~ 282 (737)
T KOG1524|consen 276 STGQLIV 282 (737)
T ss_pred cCceEEE
Confidence 7776543
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1e-10 Score=133.63 Aligned_cols=252 Identities=19% Similarity=0.281 Sum_probs=169.1
Q ss_pred cccCceeEEEEcCCCCE-EEEEECCCcEEEEECCCCccc---------cccc-------------eeeEeeccC--C---
Q 000861 833 EHCSAVNEIAISHDHSF-FVSASDDSTVKVWDSRKLEKD---------ISFR-------------SRLTYHLEG--S--- 884 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~-laTgs~DgtVkIWD~~~~~~~---------~~~~-------------~~~t~~~h~--~--- 884 (1249)
+|...-+.|..+|||+| +|||.+.-.|++||+...... +.|. .-.++..|. +
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 48888999999999996 567888999999999875310 0000 000111110 0
Q ss_pred --ce----EEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE
Q 000861 885 --RA----LCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM 958 (1249)
Q Consensus 885 --~V----~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~ 958 (1249)
+| .+++++.-..-|..++....|+-++++ .|. .+..+....+.++++. .++. ..+|+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-----qGr--------fL~P~~~~~~~lN~v~-in~~---hgLla 191 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-----QGR--------FLNPFETDSGELNVVS-INEE---HGLLA 191 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcc-----ccc--------cccccccccccceeee-ecCc---cceEE
Confidence 01 112222111112233333334444444 222 2444555567788887 7776 45899
Q ss_pred EEECCCeEEEEEcCCCccceeeecCC----CCC-----ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCC
Q 000861 959 YSTQNCGIHLWDTRSNSNTWTLKAIP----EEG-----YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQV 1029 (1249)
Q Consensus 959 sgs~dg~I~iwDlrt~~~~~~l~~~~----h~~-----~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~ 1029 (1249)
+|+.+|.|-.||.|+...+.++.... |.+ .|+++.|+.+|-.+++|+++|.+.+||+|..+++..-.++..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 99999999999999988877765422 233 499999999999999999999999999999999888777778
Q ss_pred CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccc
Q 000861 1030 CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLR 1109 (1249)
Q Consensus 1030 ~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~ 1109 (1249)
.+|..+.| .+.+. .+. ++......++|||-.+|+....+...
T Consensus 272 ~pi~~l~~-~~~~~-------q~~-v~S~Dk~~~kiWd~~~Gk~~asiEpt----------------------------- 313 (703)
T KOG2321|consen 272 LPIKKLDW-QDTDQ-------QNK-VVSMDKRILKIWDECTGKPMASIEPT----------------------------- 313 (703)
T ss_pred cceeeecc-cccCC-------Cce-EEecchHHhhhcccccCCceeecccc-----------------------------
Confidence 89999999 66633 223 33344567999999999865555411
Q ss_pred ccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1110 RNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
..+..+++-|++ .+++|-.++.+..|=+..
T Consensus 314 -------------------~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 314 -------------------SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred -------------------CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 146677777877 888998888887776654
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.32 E-value=3.4e-10 Score=119.98 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=179.2
Q ss_pred ceEEEEEec---CCCEEEEEeC----CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCC--Ccc
Q 000861 885 RALCTMMLR---HSAQVVVGAC----DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNC--ASH 955 (1249)
Q Consensus 885 ~V~sl~fsp---dg~~Lasgs~----Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~--~g~ 955 (1249)
.+.++.|+. .+.+|+.|+. .+.|.+..++.. .++. ..+.--.|..+++.+. |.|+.. .-+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~---s~e~-------~~~a~fd~~YP~tK~~-wiPd~~g~~pd 114 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED---SGEL-------VEDANFDHPYPVTKLM-WIPDSKGVYPD 114 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC---CCce-------eccCCCCCCCCccceE-ecCCccccCcc
Confidence 477888874 2357787764 466777766511 1222 0111124778899998 999841 112
Q ss_pred EEEEEECCCeEEEEEcCCCcc-------ceeeecCCCCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCc--ccccc
Q 000861 956 MFMYSTQNCGIHLWDTRSNSN-------TWTLKAIPEEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVP--VNSWQ 1025 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~-------~~~l~~~~h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~--l~s~~ 1025 (1249)
+|++ .+..+++|.+...+. +..-+...+.++++++.|+. +-+++.+.+-|-+..+||+.++.. +++-.
T Consensus 115 lLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 4443 345899998874221 11112344567899999987 568999999999999999998754 55545
Q ss_pred cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCC
Q 000861 1026 YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPK 1105 (1249)
Q Consensus 1026 ~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s 1105 (1249)
..|...|..++| ..++. ..+++.+.||.+++||++..+-...+..... .......++|+...|...+++.
T Consensus 193 IAHDKEV~DIaf-~~~s~--------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 193 IAHDKEVYDIAF-LKGSR--------DVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred EecCcceeEEEe-ccCcc--------ceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcCCchHHhhhh
Confidence 579999999999 66443 5788999999999999997654444332211 1445677888888888888888
Q ss_pred cccccccccccccc--ccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCCCC
Q 000861 1106 TDLRRNVNQKYRVD--ELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1106 ~dg~~~~~~~~~~~--~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
.|+..+..-+++.- .+....+|...|++++|.|.. .|+|+|+|..+.+||+...-
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 88887776666653 334557899999999999988 99999999999999997643
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.9e-10 Score=123.76 Aligned_cols=202 Identities=16% Similarity=0.294 Sum_probs=140.6
Q ss_pred ceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEcccc
Q 000861 837 AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 837 ~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
.+..++|++.-..||++..|-+|++||-..... +.++-. ....|+|++|-|.+ ..|++|+..| |.+|..+..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~p-----t~Lks~-sQrnvtclawRPlsaselavgCr~g-IciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----TKLKSV-SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRT 172 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCC-----ceecch-hhcceeEEEeccCCcceeeeeecce-eEEEEcCcc
Confidence 466788988666788999999999999877432 111111 22469999999954 5777777765 999998832
Q ss_pred ccCCCcccc--ccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 916 SRGLGNVEK--YSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 916 ~~~~g~~~~--~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
... +...+ -+....+....+| ..|+++. |++| |..+++++. +..|.+||..++..+... ....+.++-+
T Consensus 173 ln~-~r~~~~~s~~~~qvl~~pgh-~pVtsmq-wn~d---gt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slL 244 (445)
T KOG2139|consen 173 LNA-NRNIRMMSTHHLQVLQDPGH-NPVTSMQ-WNED---GTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLL 244 (445)
T ss_pred ccc-ccccccccccchhheeCCCC-ceeeEEE-EcCC---CCEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeE
Confidence 211 11101 1111223333444 6799999 9999 667777664 678999999999876544 2246789999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeE
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I 1063 (1249)
.|+||+.+|.+++-|+..++|.....-....|..+ .+.|..-+| +|.|. .+++++++...+
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacW-spcGs--------fLLf~~sgsp~l 305 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACW-SPCGS--------FLLFACSGSPRL 305 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeee-cCCCC--------EEEEEEcCCceE
Confidence 99999999999999999999976544444445443 348999999 99998 355555555433
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.1e-10 Score=128.51 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=181.1
Q ss_pred cCceeEEEEcCCCC--EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEc
Q 000861 835 CSAVNEIAISHDHS--FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 835 ~~~V~~la~spdg~--~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv 912 (1249)
...|+.++|.-|++ .+..++.|..+...++...+.........+.....+.|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677777776553 56666677777777777655322111112344455567666653 337888899999999998
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC--CeEEEEEcCCCccceeeecCCCC----
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN--CGIHLWDTRSNSNTWTLKAIPEE---- 986 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d--g~I~iwDlrt~~~~~~l~~~~h~---- 986 (1249)
.. +.. ....+..+..+ ..+..+. -++.. ..++++|+.. ..+.+||+...+.+|.-++.+..
T Consensus 133 k~-----~d~----hss~l~~la~g-~g~~~~r-~~~~~--p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 133 KS-----GDL----HSSKLIKLATG-PGLYDVR-QTDTD--PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred cC-----Ccc----ccccceeeecC-Cceeeec-cCCCC--CceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 81 111 01123333333 3344444 34443 3378889988 89999999999888877654432
Q ss_pred ---CceEEEEEcCC--CCEEEEEecCCcEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC
Q 000861 987 ---GYVSSLVTGPC--GNWFVSGSSRGVLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC 1060 (1249)
Q Consensus 987 ---~~I~sl~~spd--g~~L~sgs~dG~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D 1060 (1249)
-+++++.|-+. ...|++++.-+.+++||.+.+ +++..+.. ...+|.++.. .|.++ +|++|...
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l-~p~gn---------~Iy~gn~~ 268 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGL-TPSGN---------FIYTGNTK 268 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeee-cCCCc---------EEEEeccc
Confidence 36788899887 789999999999999999865 46666654 5678999999 99998 89999999
Q ss_pred CeEEEEECCCCceeEE-EecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCC
Q 000861 1061 NEVSLWNAENGSCHQV-LRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPG 1139 (1249)
Q Consensus 1061 g~I~vWDl~tg~~~~~-l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spd 1139 (1249)
+.+..||.+.+..... +.+. .++++++..+|.
T Consensus 269 g~l~~FD~r~~kl~g~~~kg~-----------------------------------------------tGsirsih~hp~ 301 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGCGLKGI-----------------------------------------------TGSIRSIHCHPT 301 (412)
T ss_pred chhheecccCceeeccccCCc-----------------------------------------------cCCcceEEEcCC
Confidence 9999999998876554 3322 127888999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1140 G-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1140 g-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
+ +++++|-|+.|||+|+.+.+.
T Consensus 302 ~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 302 HPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CceEEeeccceeEEEeecccchh
Confidence 8 999999999999999998544
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.8e-10 Score=139.33 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=142.4
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEccccccCCCccccccCcccee
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIK 932 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~ 932 (1249)
+..|.+||..... ...+..|...+.+.+|+|+|+.|+.++.+ ..|++||+. . ++. ..+.
T Consensus 183 ~~~i~i~d~dg~~-------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~-t----g~~------~~l~ 244 (429)
T PRK01742 183 PYEVRVADYDGFN-------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR-S----GAR------KVVA 244 (429)
T ss_pred eEEEEEECCCCCC-------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC-C----Cce------EEEe
Confidence 5789999987654 23455677789999999999999987654 469999987 1 221 1122
Q ss_pred eecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEE--EEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEe-cCC
Q 000861 933 KKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIH--LWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGS-SRG 1008 (1249)
Q Consensus 933 ~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~--iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs-~dG 1008 (1249)
.+.++ ..... |+|+ |+.|+++. .+|.+. +||+.+++. ..+ ..+.+.+.+.+|+|||++|+.++ .+|
T Consensus 245 ~~~g~---~~~~~-wSPD---G~~La~~~~~~g~~~Iy~~d~~~~~~-~~l--t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 245 SFRGH---NGAPA-FSPD---GSRLAFASSKDGVLNIYVMGANGGTP-SQL--TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred cCCCc---cCcee-ECCC---CCEEEEEEecCCcEEEEEEECCCCCe-Eee--ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 22222 33456 9999 66777654 677654 456666553 334 23566788999999999877655 578
Q ss_pred cEEEEeCCCC-CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCC
Q 000861 1009 VLTLWDLRFL-VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTE 1087 (1249)
Q Consensus 1009 ~I~lWDlr~~-~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~ 1087 (1249)
...+|++... .....+ .+.. ....| +|+|+ +++.++.++ +.+||+.+++....... .
T Consensus 315 ~~~I~~~~~~~~~~~~l--~~~~--~~~~~-SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~----- 372 (429)
T PRK01742 315 SPQVYRMSASGGGASLV--GGRG--YSAQI-SADGK---------TLVMINGDN-VVKQDLTSGSTEVLSST--F----- 372 (429)
T ss_pred CceEEEEECCCCCeEEe--cCCC--CCccC-CCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCC--C-----
Confidence 8888887532 222222 2222 35678 99998 777776654 66699988865432110 0
Q ss_pred cccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCC--CCCccEE
Q 000861 1088 MSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHC--SPGRSYC 1164 (1249)
Q Consensus 1088 i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~--~~~~~~~ 1164 (1249)
....+.|+||| .|+.++.++.+.+|++. ++.....
T Consensus 373 ------------------------------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 373 ------------------------------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred ------------------------------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 11245689999 88888889988888763 3444444
Q ss_pred E
Q 000861 1165 I 1165 (1249)
Q Consensus 1165 l 1165 (1249)
+
T Consensus 411 l 411 (429)
T PRK01742 411 L 411 (429)
T ss_pred c
Confidence 4
No 214
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=2e-10 Score=124.53 Aligned_cols=218 Identities=15% Similarity=0.213 Sum_probs=156.8
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEEC-CCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDS-RKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD 904 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~-~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D 904 (1249)
.++..++||.+.|+....-|...-+++.+.|.++|||-- +.++. -+..+.....+++++.+.++...|++|-.+
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n 89 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----WPSIYHYMPSPCSAMEYVSESRRLYVGQDN 89 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----CchhhhhCCCCceEeeeeccceEEEEEEec
Confidence 367789999999999999998888999999999999953 34442 122333445679999999999999999999
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEE-----------------
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIH----------------- 967 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~----------------- 967 (1249)
|++.-+.+. ..|.+...++.+..|.+.+..+. |+-. ...+++.+.|..+.
T Consensus 90 gtvtefs~s---------edfnkm~~~r~~~~h~~~v~~~i-f~~~---~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~ 156 (404)
T KOG1409|consen 90 GTVTEFALS---------EDFNKMTFLKDYLAHQARVSAIV-FSLT---HEWVLSTGKDKQFAWHCTESGNRLGGYNFET 156 (404)
T ss_pred ceEEEEEhh---------hhhhhcchhhhhhhhhcceeeEE-ecCC---ceeEEEeccccceEEEeeccCCcccceEeec
Confidence 999988876 33444445666667777777776 5544 33555555443321
Q ss_pred ----------------------EEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccc
Q 000861 968 ----------------------LWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 968 ----------------------iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~ 1025 (1249)
+-.+....+.......+|.+.+++++|++....|.+|..|..+.+||+--+.-+.--.
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111111112235789999999999999999999999999999996544444334
Q ss_pred cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC
Q 000861 1026 YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG 1071 (1249)
Q Consensus 1026 ~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg 1071 (1249)
.+|...|..+.+ .+.-. .+++++.||.|.+||+...
T Consensus 237 ~gh~~kV~~l~~-~~~t~---------~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 QGHNDKVQALSY-AQHTR---------QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccchhhhhhhhh-hhhhe---------eeeeccCCCeEEEEeccce
Confidence 467778888877 55554 7899999999999998743
No 215
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.3e-11 Score=139.15 Aligned_cols=225 Identities=24% Similarity=0.354 Sum_probs=164.1
Q ss_pred CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCc-cccccceeeEeeccCCceEEEEEecCCCEEEEEeC
Q 000861 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLE-KDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC 903 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~-~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~ 903 (1249)
.-.+..+.||...|..++--.+.+-|+++|.|++||+|.+.... ...+..+..+|..|..+|.++.|..+.++++++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 34577899999999999888788899999999999999987533 344455788999999999999999998888764
Q ss_pred CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE-ECCCeEEEEEcCCCccceeeec
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS-TQNCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 904 Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg-s~dg~I~iwDlrt~~~~~~l~~ 982 (1249)
||-|++||.- .++...++.. ..-.+..+.|.|+. +-+ ...++.| +...+|+++|.|..+....++.
T Consensus 803 D~giHlWDPF-igr~Laq~~d-------apk~~a~~~ikcl~--nv~---~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 803 DGGIHLWDPF-IGRLLAQMED-------APKEGAGGNIKCLE--NVD---RHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred cCcceeeccc-ccchhHhhhc-------CcccCCCceeEecc--cCc---chheeeeccchhhheeeecccccceeeEEe
Confidence 7889999976 2211111100 00011223444444 223 2344444 7889999999999876655543
Q ss_pred ---CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 983 ---IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 983 ---~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
++..+.++++++-+.|+|++.|-++|+|.+.|.|+|+.+.+|+ +..+....++- |..+ .++....
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqlaa--psdq---------~L~~sal 937 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLAA--PSDQ---------ALAQSAL 937 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhcC--chhH---------HHHhhcc
Confidence 3445779999999999999999999999999999999999997 46666656654 5554 5666667
Q ss_pred CCeEEE-EECCCCceeEE
Q 000861 1060 CNEVSL-WNAENGSCHQV 1076 (1249)
Q Consensus 1060 Dg~I~v-WDl~tg~~~~~ 1076 (1249)
|.++.+ |-.-+|.....
T Consensus 938 dHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred cceeEeeehhcCCeeeec
Confidence 888888 87766654333
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=6.4e-09 Score=112.22 Aligned_cols=242 Identities=14% Similarity=0.156 Sum_probs=164.8
Q ss_pred ceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEE-EeCC------CeEEE
Q 000861 837 AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVV-GACD------GIIHM 909 (1249)
Q Consensus 837 ~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Las-gs~D------g~I~v 909 (1249)
...+++|+.|..-|+.|.++| .+||+++-..+... ..+...+-.+.-+-| -.++++- ||.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~----r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS----RQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh----hccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEE
Confidence 345599999999999887765 79999886443111 111111112222222 2344443 4333 57899
Q ss_pred EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcC-CCccceeeecCCCCCc
Q 000861 910 FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTR-SNSNTWTLKAIPEEGY 988 (1249)
Q Consensus 910 wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlr-t~~~~~~l~~~~h~~~ 988 (1249)
||-. .. .++.++. ...+|.++. +.++ .+++.. .+.|++|... ..+.++.+........
T Consensus 80 WDD~-k~------------~~i~el~-f~~~I~~V~-l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 80 WDDL-KE------------RCIIELS-FNSEIKAVK-LRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred Eecc-cC------------cEEEEEE-eccceeeEE-EcCC-----eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc
Confidence 9933 11 1233333 456788888 8877 666554 6799999987 4566666654443444
Q ss_pred eEEEEEcCCCCEEEE-EecCCcEEEEeCCCCCc-ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe-EEE
Q 000861 989 VSSLVTGPCGNWFVS-GSSRGVLTLWDLRFLVP-VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE-VSL 1065 (1249)
Q Consensus 989 I~sl~~spdg~~L~s-gs~dG~I~lWDlr~~~~-l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~-I~v 1065 (1249)
..+++-..+...|+. |..-|.|.+-|+...+. -..+-..|.+.|.+++. +-+|. .+++++..|+ |+|
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L-n~~Gt---------~vATaStkGTLIRI 208 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL-NLQGT---------LVATASTKGTLIRI 208 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE-cCCcc---------EEEEeccCcEEEEE
Confidence 555554445556665 55679999999976555 12233469999999999 88888 9999999997 899
Q ss_pred EECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEE
Q 000861 1066 WNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLT 1144 (1249)
Q Consensus 1066 WDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~t 1144 (1249)
||..+|..++.++....+ ..|.+++|+|++ +|++
T Consensus 209 Fdt~~g~~l~E~RRG~d~---------------------------------------------A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDR---------------------------------------------ADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EEcCCCcEeeeeecCCch---------------------------------------------heEEEEEeCCCccEEEE
Confidence 999999999998842221 179999999999 9999
Q ss_pred EeCCCcEEEEeCCCCCc
Q 000861 1145 GGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1145 gs~Dg~IriWDl~~~~~ 1161 (1249)
+|+.|+|.++.+.....
T Consensus 244 sSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EcCCCeEEEEEeecCCC
Confidence 99999999999987543
No 217
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.25 E-value=3.6e-11 Score=157.18 Aligned_cols=120 Identities=18% Similarity=0.103 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhH
Q 000861 363 AEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYL 442 (1249)
Q Consensus 363 ~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~l 442 (1249)
.+.+..++ +|+++.||.+++..|..+.. .+.+.+.++..|.|.+|.||.+-++.+..+. . +.-
T Consensus 777 ~~~L~~ll--~D~d~~VR~aA~~aLg~~g~-------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~----~~a 839 (897)
T PRK13800 777 GDAVRALT--GDPDPLVRAAALAALAELGC-------PPDDVAAATAALRASAWQVRQGAARALAGAA----A----DVA 839 (897)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHhcCC-------cchhHHHHHHHhcCCChHHHHHHHHHHHhcc----c----cch
Confidence 35566777 47789999999999877632 1334466889999999999999988886543 2 234
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHH
Q 000861 443 LPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAA 507 (1249)
Q Consensus 443 lPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~ 507 (1249)
+|.++.+|.|+.+.||.+|+..|..+- ..+ +..+.+...+.+++..||.+++..|..
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~~-----~~~---~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRWP-----GDP---AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccC-----CCH---HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 588999999999999999999998851 122 244555677889999999999988753
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.3e-09 Score=131.72 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=149.9
Q ss_pred CccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC
Q 000861 819 SGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg 895 (1249)
.+|+.+|.....+..|...+.+.+|+|||+.++..+.+ ..|.+||+.+++. ..+....+.+.+..|+|||
T Consensus 179 ~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-------~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 179 QISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-------RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-------EEeecCCCCccceEECCCC
Confidence 34557787777888889999999999999998887743 3599999988763 1222233456789999999
Q ss_pred CEEE-EEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEc--
Q 000861 896 AQVV-VGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDT-- 971 (1249)
Q Consensus 896 ~~La-sgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDl-- 971 (1249)
+.|+ +.+.+|..++|.++..+ +. .+.+..+.+...... |+|| |+.+++.+. +|...+|.+
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~---~~---------~~~lt~~~~~~~~~~-wSpD---G~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADG---SG---------LRRLTQSSGIDTEPF-FSPD---GRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CEEEEEEccCCCceEEEEECCC---CC---------cEECCCCCCCCcCeE-EcCC---CCEEEEEecCCCCcEEEEEEC
Confidence 9887 46778888888876211 11 233333444445566 9999 667766554 455566654
Q ss_pred CCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC---cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccC
Q 000861 972 RSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG---VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVST 1048 (1249)
Q Consensus 972 rt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG---~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~ 1048 (1249)
.+++. ..+.. +........|+|+|++++..+.++ .|.+||+.++.... +... .......| +|+|+
T Consensus 316 ~~g~~-~~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~--~~~~~p~~-spdg~----- 383 (427)
T PRK02889 316 SGGAA-QRVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT--TRDESPSF-APNGR----- 383 (427)
T ss_pred CCCce-EEEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC--CCccCceE-CCCCC-----
Confidence 44432 22322 223345678999999998877654 59999998776543 2221 23467789 99998
Q ss_pred CCCCEEEEEECCC---eEEEEECCCCceeEEEecccCCCCCCcccccccc
Q 000861 1049 TARPLIYVAAGCN---EVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1049 ~~~~~l~t~s~Dg---~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
.|+.++.++ .+.+.+. +|.....+.... ..+....|+|
T Consensus 384 ----~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~----g~~~~p~wsp 424 (427)
T PRK02889 384 ----YILYATQQGGRSVLAAVSS-DGRIKQRLSVQG----GDVREPSWGP 424 (427)
T ss_pred ----EEEEEEecCCCEEEEEEEC-CCCceEEeecCC----CCCCCCccCC
Confidence 666665433 3666666 455555554222 2344455554
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=4.3e-11 Score=133.86 Aligned_cols=200 Identities=10% Similarity=0.157 Sum_probs=163.3
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccC
Q 000861 839 NEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRG 918 (1249)
Q Consensus 839 ~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~ 918 (1249)
..+.++.+|+.++-|+..|.|-.+|+.++.. ...+.. ...|.++.|..+.+++|++-. ..++|||-.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L------~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~----- 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL------HFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNN----- 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeeccccee------eeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCC-----
Confidence 4677889999999999999999999998762 222222 235899999999988888754 568999876
Q ss_pred CCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC
Q 000861 919 LGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG 998 (1249)
Q Consensus 919 ~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg 998 (1249)
|. .++.++. ...|..+. |-|. .-+|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-+
T Consensus 200 -Gt--------ElHClk~-~~~v~rLe-FLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 200 -GT--------ELHCLKR-HIRVARLE-FLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYN 263 (545)
T ss_pred -Cc--------EEeehhh-cCchhhhc-ccch---hheeeecccCCceEEEeechhhhhHHHHc--cCCccchhhcCCcc
Confidence 32 2333332 34577787 8887 45788888899999999999999887754 57889999999988
Q ss_pred CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 999 NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 999 ~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
-.+-+|...|+|.+|.....+++..+.. |.++|.++++ .++|. |+++++.|+.++|||+++...+.++.
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLc-H~g~V~siAv-~~~G~---------YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILC-HRGPVSSIAV-DRGGR---------YMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHh-cCCCcceEEE-CCCCc---------EEeecccccceeEeeeccccccceee
Confidence 8999999999999999999999888764 9999999999 99998 99999999999999999876555554
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=2.9e-11 Score=135.24 Aligned_cols=225 Identities=16% Similarity=0.245 Sum_probs=168.1
Q ss_pred CCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeE
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT 878 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t 878 (1249)
+.|+.+|..+..++.-+-....| .++++...+.- ...|.++.|-.+.+|||.+- ...+.|||-...+ ...
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-------lHC 205 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-------LHC 205 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-------Eee
Confidence 55667777655443222233344 45667666653 45788999998888888774 4689999977655 334
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE
Q 000861 879 YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM 958 (1249)
Q Consensus 879 ~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~ 958 (1249)
+..|. .|..+.|.|..-.|++++..|.++.-|+. .|++ +..+....+.+..+. -+|- ...+-
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-----~Gkl--------Va~~~t~~G~~~vm~-qNP~---NaVih 267 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVS-----TGKL--------VASIRTGAGRTDVMK-QNPY---NAVIH 267 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeec-----hhhh--------hHHHHccCCccchhh-cCCc---cceEE
Confidence 44444 59999999998889999999999999998 4543 444455567777776 7777 45888
Q ss_pred EEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEE
Q 000861 959 YSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLF 1038 (1249)
Q Consensus 959 sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~ 1038 (1249)
.|..+|+|.+|.....+.+-.+. .|.++|.+++++++|++++|.+.|..++|||+|.-..+.++..++ +...+++
T Consensus 268 ~GhsnGtVSlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~--~a~~ls~- 342 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH--PASNLSL- 342 (545)
T ss_pred EcCCCceEEecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC--Ccccccc-
Confidence 99999999999999888876664 499999999999999999999999999999999887777765433 5667777
Q ss_pred cCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 1039 VPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 1039 sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
+..| +++++....+.+|.
T Consensus 343 Sqkg-----------lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 343 SQKG-----------LLALSYGDHVQIWK 360 (545)
T ss_pred cccc-----------ceeeecCCeeeeeh
Confidence 5554 35555566799994
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2e-09 Score=129.99 Aligned_cols=232 Identities=11% Similarity=0.045 Sum_probs=150.0
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEE---CCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSAS---DDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs---~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
..+|+.+|.....+..+...+.+.+|||||+.++..+ .+..+.+||+.+++.. .+....+.+....|+||
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------~l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------QVASFPRHNGAPAFSPD 253 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------EccCCCCCcCCeEECCC
Confidence 4456667766677777888999999999999888654 2457999999877521 11122233457899999
Q ss_pred CCEEEEE-eCCC--eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC-C--eEEE
Q 000861 895 SAQVVVG-ACDG--IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN-C--GIHL 968 (1249)
Q Consensus 895 g~~Lasg-s~Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d-g--~I~i 968 (1249)
|+.|+.. +.+| .|++||++ .+. ++.+..+...+.... |+|+ |+.|++++.+ + .|+.
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~-----tg~---------~~~lt~~~~~~~~~~-wSPD---G~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLA-----SGQ---------IRQVTDGRSNNTEPT-WFPD---SQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECC-----CCC---------EEEccCCCCCcCceE-ECCC---CCEEEEEeCCCCCceEEE
Confidence 9988865 4455 47788887 122 222333334556676 9999 6777776654 3 4566
Q ss_pred EEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC---CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 969 WDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR---GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 969 wDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d---G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
+|+.+++.. .+.. +.+...+.+|+|+|++++..+.+ ..|.+||+.++... .+... .......| +|+|.
T Consensus 316 ~d~~~g~~~-~lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~-SpDG~-- 386 (429)
T PRK03629 316 VNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSI-APNGT-- 386 (429)
T ss_pred EECCCCCeE-Eeec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceE-CCCCC--
Confidence 677666432 3322 23455678999999999876654 35889999877643 22221 12346778 99998
Q ss_pred ccCCCCCEEEEEECCCe---EEEEECCCCceeEEEecccCCCCCCcccccccc
Q 000861 1046 VSTTARPLIYVAAGCNE---VSLWNAENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~---I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
+|+.++.++. +.+|++. |.....+..+. ..+....|+|
T Consensus 387 -------~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~----~~~~~p~Wsp 427 (429)
T PRK03629 387 -------MVIYSSSQGMGSVLNLVSTD-GRFKARLPATD----GQVKFPAWSP 427 (429)
T ss_pred -------EEEEEEcCCCceEEEEEECC-CCCeEECccCC----CCcCCcccCC
Confidence 7888877653 7778874 55555555322 2345555654
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.7e-09 Score=131.08 Aligned_cols=219 Identities=13% Similarity=0.062 Sum_probs=146.4
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
..+|+..|.....+..|...+.+.+|+|||+.++.++.+ ..|.+||+.+++. ..+..+.+...+..|+|+
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-------ELVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-------EEeccCCCCccCceECCC
Confidence 456777787778888888899999999999999887743 4699999987752 122333444567899999
Q ss_pred CCEEE-EEeCCC--eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CC--eEEE
Q 000861 895 SAQVV-VGACDG--IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NC--GIHL 968 (1249)
Q Consensus 895 g~~La-sgs~Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg--~I~i 968 (1249)
|+.++ +.+.+| .|++||+. .+. ++.+..+.+...... |+|+ |+.+++++. +| .|++
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~-----~g~---------~~~lt~~~~~~~~~~-~spD---G~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLG-----SRQ---------LTRLTNHFGIDTEPT-WAPD---GKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECC-----CCC---------eEECccCCCCccceE-ECCC---CCEEEEEECCCCCceEEE
Confidence 98776 445555 58888877 122 223333434445566 9999 667776664 44 4777
Q ss_pred EEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC---cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 969 WDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG---VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 969 wDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG---~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
+|+.+++.. .+.. +.......+|+|+|++++..+.++ .|.+||+.++... .+..+ .......| +|+|+
T Consensus 321 ~dl~~g~~~-~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~-spdG~-- 391 (433)
T PRK04922 321 VAASGGSAE-RLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSF-APNGS-- 391 (433)
T ss_pred EECCCCCeE-Eeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceE-CCCCC--
Confidence 787776543 3322 233455789999999998876543 5999999877654 33322 23456788 99998
Q ss_pred ccCCCCCEEEEEECC---CeEEEEECCCCceeEEEe
Q 000861 1046 VSTTARPLIYVAAGC---NEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~D---g~I~vWDl~tg~~~~~l~ 1078 (1249)
+++..+.+ +.+.+++.. |.....+.
T Consensus 392 -------~i~~~s~~~g~~~L~~~~~~-g~~~~~l~ 419 (433)
T PRK04922 392 -------MVLYATREGGRGVLAAVSTD-GRVRQRLV 419 (433)
T ss_pred -------EEEEEEecCCceEEEEEECC-CCceEEcc
Confidence 66665543 468888885 44444443
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=130.05 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=208.5
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEec-cccCceeEEEEcCC--CCEEEEEECCCcEEEEECCCCccccccc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQ-EHCSAVNEIAISHD--HSFFVSASDDSTVKVWDSRKLEKDISFR 874 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~-~H~~~V~~la~spd--g~~laTgs~DgtVkIWD~~~~~~~~~~~ 874 (1249)
++.|...|..+.+++.+...-+|+ ..++.+..+. ||...|..-.|-|. .+-+++++.||.|++=.+.......
T Consensus 147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e--- 223 (559)
T KOG1334|consen 147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE--- 223 (559)
T ss_pred eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee---
Confidence 677888999999998777788999 6777666665 79999999999884 4689999999999998765433211
Q ss_pred eeeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCC---cEEEEEEecCC
Q 000861 875 SRLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEG---AIVTLVNYNTD 950 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~---~V~~l~~fs~d 950 (1249)
.......|.++|..++.-|+. ..|.+++.|+.+.-+|+. .......+ ..-..+.. ...+++ .+|.
T Consensus 224 ~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~pa~~~---------~cr~~~~~~~v~L~~Ia-~~P~ 292 (559)
T KOG1334|consen 224 NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDVPAEKF---------VCREADEKERVGLYTIA-VDPR 292 (559)
T ss_pred cceecccccCccceeeecCCCCCcccccccccceeeeeec-cCCcccee---------eeeccCCccceeeeeEe-cCCC
Confidence 122445688889999999965 578899999999999987 33222221 11122222 345565 6776
Q ss_pred CCCccEEEEEECCCeEEEEEcCCCccc------eeeec----CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC--C
Q 000861 951 NCASHMFMYSTQNCGIHLWDTRSNSNT------WTLKA----IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF--L 1018 (1249)
Q Consensus 951 ~~~g~~L~sgs~dg~I~iwDlrt~~~~------~~l~~----~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~--~ 1018 (1249)
+ ...+++++.|-.+++||.|.-... ..+.. ....-.|+|++|+.++.-|++...|-.|+++.-.. |
T Consensus 293 n--t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 293 N--TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred C--ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5 348999999999999998853221 12210 12345699999999888888888898999995432 2
Q ss_pred ----------CcccccccCCC--CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCC
Q 000861 1019 ----------VPVNSWQYSQV--CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDT 1086 (1249)
Q Consensus 1019 ----------~~l~s~~~~~~--~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~ 1086 (1249)
..++..-.+|. ..|..+-||.|... ++++|+..|.|.+|+-.+++.++.+.+...
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---------yVvSGSDCGhIFiW~K~t~eii~~MegDr~---- 437 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---------YVVSGSDCGHIFIWDKKTGEIIRFMEGDRH---- 437 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccc---------eEEecCccceEEEEecchhHHHHHhhcccc----
Confidence 11222112443 35888888777776 999999999999999998887766653111
Q ss_pred CcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1087 EMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1087 ~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
-|+|+-.+|.- .|++.|-|..|+||-..+.+.
T Consensus 438 -------------------------------------------VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 438 -------------------------------------------VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred -------------------------------------------eEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 57888888877 999999999999998755544
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.8e-09 Score=129.33 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=146.4
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEEC---CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASD---DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~---DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
..+|+.+|.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.+.+.+..|+||
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-------ELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-------EEeecCCCcccCcEECCC
Confidence 34566788888889999999999999999998888764 46899999988762 234445566788999999
Q ss_pred CCEEE-EEeCCCe--EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-C--CeEEE
Q 000861 895 SAQVV-VGACDGI--IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-N--CGIHL 968 (1249)
Q Consensus 895 g~~La-sgs~Dg~--I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-d--g~I~i 968 (1249)
|+.|+ +.+.+|. |.+||++ .+. .+.+..+.+...... |+|+ |+.+++.+. + ..|++
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~-----~~~---------~~~Lt~~~~~~~~~~-~spD---G~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLR-----SGT---------TTRLTDSPAIDTSPS-YSPD---GSQIVFESDRSGSPQLYV 318 (435)
T ss_pred CCEEEEEEecCCCceEEEEECC-----CCc---------eEEccCCCCccCcee-EcCC---CCEEEEEECCCCCCeEEE
Confidence 98876 4556665 5555665 122 233333444455566 9999 667777664 3 36888
Q ss_pred EEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC---CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 969 WDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR---GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 969 wDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d---G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
||+.+++.. .+.. +.+.+....|+|+|++++..+.+ ..|.+||+..+. ...+..+ ..+....| +|+|+
T Consensus 319 ~d~~g~~~~-~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~--~~~~~p~~-spDG~-- 389 (435)
T PRK05137 319 MNADGSNPR-RISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSG--FLVEGPTW-APNGR-- 389 (435)
T ss_pred EECCCCCeE-Eeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCC--CCCCCCeE-CCCCC--
Confidence 998766543 3322 24556778999999999887653 258888985443 3333322 24677889 99998
Q ss_pred ccCCCCCEEEEEECC------CeEEEEECCCCce
Q 000861 1046 VSTTARPLIYVAAGC------NEVSLWNAENGSC 1073 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~D------g~I~vWDl~tg~~ 1073 (1249)
.|+..+.+ ..+.++|+..+..
T Consensus 390 -------~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 390 -------VIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -------EEEEEEccCCCCCcceEEEEECCCCce
Confidence 66555432 2578888865543
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.19 E-value=2e-09 Score=122.61 Aligned_cols=227 Identities=12% Similarity=0.167 Sum_probs=146.9
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEE-----ecCCCEEEEEeCCCeEEEEEc
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMM-----LRHSAQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~f-----spdg~~Lasgs~Dg~I~vwdv 912 (1249)
++...++-.|.+|+-.- ...+.+|+...+......-....|.+.. -+|-+| .+.+--++.|-.-|.|.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~--P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTS--PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCC--CceecccccccCCCCcceEEeeccCceEEecc
Confidence 33444444555554332 2467788877432111000122333322 233333 356667888888898988887
Q ss_pred cccccCCCcc-ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC--------------ccc
Q 000861 913 DHISRGLGNV-EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN--------------SNT 977 (1249)
Q Consensus 913 ~~~~~~~g~~-~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~--------------~~~ 977 (1249)
.. .++ ..|.... ...+..|+++. |-|.. ...++++-.+|.+.+||..-. ...
T Consensus 203 ~~-----~~~sklfne~r-----~i~ktsvT~ik-Wvpg~--~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 203 IN-----FEVSKLFNEER-----LINKSSVTCIK-WVPGS--DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQF 269 (636)
T ss_pred hh-----hHHHHhhhhcc-----cccccceEEEE-EEeCC--CceEEEEEecCceEEeeccccccCCCCcccccCCCCee
Confidence 61 111 1111111 11346799998 87775 348888889999999976311 000
Q ss_pred eeee------------cCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 978 WTLK------------AIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 978 ~~l~------------~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
.... ..-..+.|..++|+|||++|++.+.||.++|||..+.+.+...+. .-+...+++| +|||+
T Consensus 270 ~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcW-SPDGK-- 345 (636)
T KOG2394|consen 270 AILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCW-SPDGK-- 345 (636)
T ss_pred EEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEE-cCCcc--
Confidence 0000 001245789999999999999999999999999988877766543 4567899999 99999
Q ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccc
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
+|++|++|.-|.||.+..++.+..-.+|. ..+..++|.|
T Consensus 346 -------yIvtGGEDDLVtVwSf~erRVVARGqGHk----SWVs~VaFDp 384 (636)
T KOG2394|consen 346 -------YIVTGGEDDLVTVWSFEERRVVARGQGHK----SWVSVVAFDP 384 (636)
T ss_pred -------EEEecCCcceEEEEEeccceEEEeccccc----cceeeEeecc
Confidence 99999999999999999887766555433 4677888875
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=2.7e-09 Score=114.87 Aligned_cols=285 Identities=14% Similarity=0.088 Sum_probs=167.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEE-EEEeCCCeEEEEEccccccC
Q 000861 840 EIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQV-VVGACDGIIHMFSVDHISRG 918 (1249)
Q Consensus 840 ~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~L-asgs~Dg~I~vwdv~~~~~~ 918 (1249)
=++|||+|+++|+++.- .+.|-|..+.+... .|.. -..|.-+.|..+.-++ ..+..|+.|.+|++. .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q------lf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~-Q--- 80 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ------LFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLV-Q--- 80 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH------HHHH-HHHhhheeeeccceeeeeeeeccceEEEEEee-c---
Confidence 36799999999999875 78888888876321 1221 2457788898877554 456788999999998 1
Q ss_pred CCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC
Q 000861 919 LGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG 998 (1249)
Q Consensus 919 ~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg 998 (1249)
.+ --..++.....+..+. |+|++ ...+.+...+-.|.+|.+.+.+... ++.+ ...+..++|+|||
T Consensus 81 -pe--------w~ckIdeg~agls~~~-WSPdg--rhiL~tseF~lriTVWSL~t~~~~~-~~~p--K~~~kg~~f~~dg 145 (447)
T KOG4497|consen 81 -PE--------WYCKIDEGQAGLSSIS-WSPDG--RHILLTSEFDLRITVWSLNTQKGYL-LPHP--KTNVKGYAFHPDG 145 (447)
T ss_pred -ce--------eEEEeccCCCcceeee-ECCCc--ceEeeeecceeEEEEEEeccceeEE-eccc--ccCceeEEECCCC
Confidence 11 2334455566778887 99994 2577778889999999998876542 2222 3345778888888
Q ss_pred CEEEEEecCC------------------------------------cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCC
Q 000861 999 NWFVSGSSRG------------------------------------VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 999 ~~L~sgs~dG------------------------------------~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g 1042 (1249)
++.+..+... .+.+||---.-.+..+ .-+-.+..+.| +|.+
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~w-sP~~ 222 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEW-SPCN 222 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEe-cccc
Confidence 8877665432 1223332111111111 12235777888 8877
Q ss_pred CCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCC---------------CCcccccccccCCCCCCCCCcc
Q 000861 1043 NAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGD---------------TEMSDLPWAFARPSSRSNPKTD 1107 (1249)
Q Consensus 1043 ~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~---------------~~i~~l~~sp~~p~~~~~~s~d 1107 (1249)
+ ++++|+.|+.+++.+--+.+....+-....-++ -...++.|.|.... +..-+.
T Consensus 223 q---------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~--a~~~~~ 291 (447)
T KOG4497|consen 223 Q---------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE--AHIWEE 291 (447)
T ss_pred c---------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc--cCcccc
Confidence 7 999999999999877655444333321111111 01223333331100 000000
Q ss_pred c--cccc-cccccc---cccCCCCCCCCCeEEEeecCCC-eEEEEeC--CCcEEEEeCCCCCccEEE
Q 000861 1108 L--RRNV-NQKYRV---DELNEPPPRLLGIRSLLPLPGG-DLLTGGT--DLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1108 g--~~~~-~~~~~~---~~~~~~~~~~~~V~sl~~spdg-~L~tgs~--Dg~IriWDl~~~~~~~~l 1165 (1249)
. +... ....++ ....+.+....++.-++|++|. +++|-.+ -+.+.+||+...+.-.++
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0 0000 011111 1122223445688899999999 6666543 368999999876654433
No 227
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=4.5e-10 Score=142.09 Aligned_cols=213 Identities=15% Similarity=0.259 Sum_probs=162.9
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
..-|..+|.-+. ++.|-..|.++.-+|...+.+||+.||.|++|....+.....++ .....+|+.+.|+.+|+.
T Consensus 2192 ~~tq~~~~~~~~-~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r-----t~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2192 GSTQTSRGASVM-IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR-----TAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred ccceecccceeE-eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee-----ccCcchhhhhhhcccCCc
Confidence 344664443332 33355789999999999999999999999999999988544333 122368999999999999
Q ss_pred EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE---CCCeEEEEEcCCC
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST---QNCGIHLWDTRSN 974 (1249)
Q Consensus 898 Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs---~dg~I~iwDlrt~ 974 (1249)
+..+..||.+.+|.+. . .....++.|.....+.. |-.. .+++++ .++.+.+||.--.
T Consensus 2266 ~~i~d~dg~l~l~q~~------p--------k~~~s~qchnk~~~Df~-Fi~s-----~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS------P--------KPYTSWQCHNKALSDFR-FIGS-----LLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred eeeeccCCceeecccC------C--------cceeccccCCcccccee-eeeh-----hhhccccCCCCCcccchhcccC
Confidence 9999999999999987 1 13445566777777776 5543 566654 4689999997654
Q ss_pred ccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEE
Q 000861 975 SNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLI 1054 (1249)
Q Consensus 975 ~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l 1054 (1249)
...+-+. ..|.+.++++++-|..+.|++|+.+|.|++||+|..+.++.|+. + + .. .++
T Consensus 2326 ~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~-~-~~---------~~f 2383 (2439)
T KOG1064|consen 2326 PMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------L-D-TR---------EYF 2383 (2439)
T ss_pred cccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------h-h-hh---------hee
Confidence 4433333 56999999999999999999999999999999999988888763 3 3 22 378
Q ss_pred EEEECCCeEEEEECCCCceeEEEe
Q 000861 1055 YVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1055 ~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
++++..|.++||++.....+..+.
T Consensus 2384 ~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eccCcccceEEEEccccchhhcCc
Confidence 999999999999998776655554
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=123.39 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=127.6
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCcccee-eecCCCCcEEEEEEecCCCCCc
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIK-KKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~-~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
...+.||.+.|.|+.|..+|.+|++|+.|-.+.|||.- ..+ .+. .-.+|...|.++. |-|... .
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----~~K--------llhsI~TgHtaNIFsvK-FvP~tn-n 107 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----EYK--------LLHSISTGHTANIFSVK-FVPYTN-N 107 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecch-----hcc--------eeeeeecccccceeEEe-eeccCC-C
Confidence 34678999999999999999999999999999999986 111 222 2356899999999 988753 4
Q ss_pred cEEEEEECCCeEEEEEcCCCc--------cceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccc--
Q 000861 955 HMFMYSTQNCGIHLWDTRSNS--------NTWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNS-- 1023 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~--------~~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s-- 1023 (1249)
.++++|..|..|+++|+...+ ...+.-...|...|..++..|++ +.+.+++.||+++-+|+|.......
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 789999999999999997421 11111224477888999999988 8999999999999999986322111
Q ss_pred -----cc--cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1024 -----WQ--YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1024 -----~~--~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+. .+.--...++.. +|... .++++|+.|--.++||.+
T Consensus 188 ~~~~~l~ny~~~lielk~lti-sp~rp--------~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTI-SPSRP--------YYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccHHHHHhchhhheeeeeee-cCCCC--------ceEEecCCCchhhhhhhh
Confidence 00 011224567777 77654 689999999999999964
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.12 E-value=4.2e-09 Score=113.37 Aligned_cols=167 Identities=10% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR 893 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp 893 (1249)
.-..+|+ ..-.-...+.+..+++.+++|||||+ .+.+..-|-.|.||.+.+... ..+......+..++|+|
T Consensus 71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-------~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-------YLLPHPKTNVKGYAFHP 143 (447)
T ss_pred ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-------EEecccccCceeEEECC
Confidence 3456788 45566778888899999999999996 566777899999999988652 12222234578999999
Q ss_pred CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 894 HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 894 dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
+|++.+.++.-.-...+.+. .-.....++.++...-..+.+. |+|| |. .+.+||---
T Consensus 144 dg~f~ai~sRrDCkdyv~i~----------~c~~W~ll~~f~~dT~Dltgie-WsPd---g~---------~laVwd~~L 200 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQIS----------SCKAWILLKEFKLDTIDLTGIE-WSPD---GN---------WLAVWDNVL 200 (447)
T ss_pred CCceeeeeecccHHHHHHHH----------hhHHHHHHHhcCCCcccccCce-ECCC---Cc---------EEEEecchh
Confidence 99998887753111111111 0011123445555566677787 9999 33 455676432
Q ss_pred CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeC
Q 000861 974 NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDL 1015 (1249)
Q Consensus 974 ~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDl 1015 (1249)
.-.+..++ ..-.+..+.|+|.+++|++|+.|+.+++.+-
T Consensus 201 eykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 201 EYKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred hheeeeee---eccceeEEEeccccceEEeeccchhhhhhce
Confidence 22222222 1346888999999999999999999988654
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.11 E-value=1.5e-08 Score=119.02 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=129.0
Q ss_pred EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCc
Q 000861 849 FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGI 928 (1249)
Q Consensus 849 ~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~ 928 (1249)
++++-..+|.|.|.|..+.+. ...+......-..+.|+|||+++.+++.||.|.++|+. .++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-----~~~------- 69 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKV------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-----TGK------- 69 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SE------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-----SSS-------
T ss_pred EEEEecCCCEEEEEECCCCeE------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-----ccc-------
Confidence 345667789999999998763 44555544433457899999999999999999999998 222
Q ss_pred cceeeecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEEEEEcCCCccceeeecCC-----CCCceEEEEEcCCCCEEE
Q 000861 929 SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIHLWDTRSNSNTWTLKAIP-----EEGYVSSLVTGPCGNWFV 1002 (1249)
Q Consensus 929 ~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~iwDlrt~~~~~~l~~~~-----h~~~I~sl~~spdg~~L~ 1002 (1249)
.++++... ....+++ +++| |++++++. ..+.+.++|.++.+.+..+.... ....+.++..+|.+..++
T Consensus 70 -~v~~i~~G-~~~~~i~-~s~D---G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 70 -VVATIKVG-GNPRGIA-VSPD---GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp -EEEEEE-S-SEEEEEE-E--T---TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred -EEEEEecC-CCcceEE-EcCC---CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 35555433 3466777 9999 67777664 68999999999999888775422 234678888888887554
Q ss_pred -EEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEE-ECCCeEEEEECCCCceeEEEec
Q 000861 1003 -SGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVA-AGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1003 -sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~-s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
+--..|.|.+-|......+..-............| +|+++ +++++ ..++.|.++|..+++....+..
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~-dpdgr---------y~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF-DPDGR---------YFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTSS---------EEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred EEEccCCeEEEEEeccccccceeeeccccccccccc-Ccccc---------eeeecccccceeEEEeeccceEEEEeec
Confidence 44555888888987665443322223445677888 99987 66665 4578999999999887776654
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.11 E-value=1.8e-09 Score=122.96 Aligned_cols=187 Identities=13% Similarity=0.203 Sum_probs=134.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEccccccCCCcc
Q 000861 844 SHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSVDHISRGLGNV 922 (1249)
Q Consensus 844 spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv~~~~~~~g~~ 922 (1249)
.|++--+..|=.-|.|.+.|....+...-+.. ........|+|+.|.|.+ ..++++-.+|.+.+||.......+...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhh--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 35565667777778898888766331110100 001123579999999954 566777889999999876322111100
Q ss_pred ----cccc-----------CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC
Q 000861 923 ----EKYS-----------GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 923 ----~~~~-----------~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
.... ...++..|..-++.|...+ |+|| |++|++.+.||.++|+|..+++.+..++. ..+
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~-FS~D---G~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFG 333 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA-FSPD---GKYLATVSQDGFLRIFDFDTQELLGVMKS--YFG 333 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEecccccccee-EcCC---CceEEEEecCceEEEeeccHHHHHHHHHh--hcc
Confidence 0000 0134445555567788888 9998 88999999999999999999988766643 578
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcC
Q 000861 988 YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 988 ~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
...|++|+|||+++++|++|.-|.||.+..++.+.. .++|..+|..++| .|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaF-Dp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAF-DP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEee-cc
Confidence 899999999999999999999999999987777765 5689999999999 74
No 232
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.11 E-value=1.8e-09 Score=141.37 Aligned_cols=238 Identities=17% Similarity=0.117 Sum_probs=153.6
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 000861 235 VLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFL 314 (1249)
Q Consensus 235 ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~ 314 (1249)
.++.++.+|+|+.+.||.+|++.|.++.. +-.+|.|..++.|+++.||.+.|..|..|++....-.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH
Confidence 34556666777777777777777776531 1245666666677777777777777766643211101
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHhchhhh
Q 000861 315 VHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRK---SIAEVVQELVMGPKQTPSIRRALLQDIGNLC 391 (1249)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~ 391 (1249)
.+.+.+.. . +...+. ..++.|.. .-...+..+| .|+++.||.+++..|..+.
T Consensus 688 ~L~~~L~~------~--------------d~~VR~---~A~~aL~~~~~~~~~~l~~~L--~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 688 ALRDHLGS------P--------------DPVVRA---AALDVLRALRAGDAALFAAAL--GDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred HHHHHhcC------C--------------CHHHHH---HHHHHHHhhccCCHHHHHHHh--cCCCHHHHHHHHHHHhccc
Confidence 11111110 0 000000 01111110 0113455677 5889999999999888752
Q ss_pred hhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Q 000861 392 SFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS 471 (1249)
Q Consensus 392 ~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~ 471 (1249)
. .+.|..+++|.++.||.+.++.+..+..-- ..-+|.+.++|.|+++.||..++..|..+-..
T Consensus 743 ----~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 743 ----D-------VESVAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP 805 (897)
T ss_pred ----C-------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Confidence 2 145678999999999999999887775421 12378888999999999999999999886331
Q ss_pred CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCcCCHHHHHhc
Q 000861 472 GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASLASVKALLSC 545 (1249)
Q Consensus 472 gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~~~ll~~ 545 (1249)
. .+...+...+.+++|.||.+++..+..+. ..+ -+|.|.+.|+|+.+.| +..+...-
T Consensus 806 -----~---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~~~----a~~~L~~~L~D~~~~V-R~~A~~aL 862 (897)
T PRK13800 806 -----P---DDVAAATAALRASAWQVRQGAARALAGAA----ADV----AVPALVEALTDPHLDV-RKAAVLAL 862 (897)
T ss_pred -----c---hhHHHHHHHhcCCChHHHHHHHHHHHhcc----ccc----hHHHHHHHhcCCCHHH-HHHHHHHH
Confidence 1 23455677889999999999999997654 222 2388889999999888 66655443
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.7e-08 Score=120.26 Aligned_cols=177 Identities=7% Similarity=0.063 Sum_probs=114.2
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC---CCeEEEEEccccccCCCccccccCccceee
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC---DGIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~---Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++. .|+. ..+..
T Consensus 179 ~~l~~~d~dg~~~-------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-----~G~~------~~l~~ 240 (429)
T PRK03629 179 YELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-----NGAV------RQVAS 240 (429)
T ss_pred eeEEEEcCCCCCC-------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-----CCCe------EEccC
Confidence 3688888876542 233445567999999999999887543 4578889887 1221 11112
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEEEE-ECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-Cc
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFMYS-TQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-GV 1009 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~sg-s~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G~ 1009 (1249)
+ .+.+.... |+|| |+.|+.. +.+| .|++||+.+++... +. .+...+...+|+|||++|+..+.+ |.
T Consensus 241 ~---~~~~~~~~-~SPD---G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 241 F---PRHNGAPA-FSPD---GSKLAFALSKTGSLNLYVMDLASGQIRQ-VT--DGRSNNTEPTWFPDSQNLAYTSDQAGR 310 (429)
T ss_pred C---CCCcCCeE-ECCC---CCEEEEEEcCCCCcEEEEEECCCCCEEE-cc--CCCCCcCceEECCCCCEEEEEeCCCCC
Confidence 2 22333566 9999 6667654 4444 59999998876543 32 234567889999999988877754 44
Q ss_pred --EEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC---CeEEEEECCCCce
Q 000861 1010 --LTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC---NEVSLWNAENGSC 1073 (1249)
Q Consensus 1010 --I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D---g~I~vWDl~tg~~ 1073 (1249)
|..+|+..+.... +.. .........| +|+|+ +++..+.+ ..|.+||+.++..
T Consensus 311 ~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~-SpDG~---------~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 311 PQVYKVNINGGAPQR-ITW-EGSQNQDADV-SSDGK---------FMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred ceEEEEECCCCCeEE-eec-CCCCccCEEE-CCCCC---------EEEEEEccCCCceEEEEECCCCCe
Confidence 4455666554432 221 2234556788 99998 67665543 3588899987764
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=3.5e-09 Score=129.57 Aligned_cols=275 Identities=12% Similarity=0.121 Sum_probs=178.4
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCC--ceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS--RALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~--~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
|-+++++.++-. .|+..|+ --.+.+||...+.....++.......|.. .+.. .+.+++++..-+.+..=+
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l-----~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL-----LSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccccccee-----ccceEEEEEeecceeecc
Confidence 334556665544 4666554 35799999998775443332233333411 1111 123455554433333222
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceE-
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVS- 990 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~- 990 (1249)
.. ...+....+.+.... +.-+ ...++.++.+..+.+||...+.....+... ......
T Consensus 78 ~~-----------------~~~~~~~s~wi~g~~-l~~e---~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~-er~~l~~ 135 (967)
T KOG0974|consen 78 AS-----------------NQIIERFSDWIFGAK-LFEE---NKKIALVTSRNSLLIRDSKNSSVLSKIQSD-ERCTLYS 135 (967)
T ss_pred hh-----------------hhhhhhccccccccc-hhhh---cceEEEEEcCceEEEEecccCceehhcCCC-ceEEEEe
Confidence 22 011111223333333 3333 458889999999999999888766555421 111111
Q ss_pred --EEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 991 --SLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 991 --sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
-+.++++.-++++|+.-|.|.+|+.. .........+|.+.|-++.+ +-+|. ++++++.|.++++|++
T Consensus 136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~~l~GHeG~iF~i~~-s~dg~---------~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 136 SLIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPIRLKGHEGSIFSIVT-SLDGR---------YIASVSDDRSIRLWPI 204 (967)
T ss_pred EEEEeccCcEEEEEeccccccEEEEecc-ccCCcceecccCCceEEEEE-ccCCc---------EEEEEecCcceeeeec
Confidence 22345666789999999999999987 22222234579999999999 88988 9999999999999999
Q ss_pred CCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCC
Q 000861 1069 ENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTD 1148 (1249)
Q Consensus 1069 ~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~D 1148 (1249)
++++.... ..-+|..+|+.+++.|. .++|+|.|
T Consensus 205 ~s~~~~~~----------------------------------------------~~fgHsaRvw~~~~~~n-~i~t~ged 237 (967)
T KOG0974|consen 205 DSREVLGC----------------------------------------------TGFGHSARVWACCFLPN-RIITVGED 237 (967)
T ss_pred ccccccCc----------------------------------------------ccccccceeEEEEeccc-eeEEeccc
Confidence 98764320 11345568999999988 99999999
Q ss_pred CcEEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEeeccccCCccchhhHHHHHhhhcccccCCc-ccceeEEE
Q 000861 1149 LKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCH-RDSILSLG 1227 (1249)
Q Consensus 1149 g~IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H-~d~I~~la 1227 (1249)
.+.|+|+....+. .++ .+| .+.|+.++
T Consensus 238 ctcrvW~~~~~~l-~~y---------------------------------------------------~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 238 CTCRVWGVNGTQL-EVY---------------------------------------------------DEHSGKGIWKIA 265 (967)
T ss_pred eEEEEEeccccee-hhh---------------------------------------------------hhhhhcceeEEE
Confidence 9999996643222 122 133 34689998
Q ss_pred eeecCCCEEEEEeCCCeEEEcC
Q 000861 1228 SVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1228 ~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
.+++...++|++.||.+++|+
T Consensus 266 -~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 266 -VPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -EcCCceEEEeeccCcchhhhh
Confidence 888889999999999999996
No 235
>PRK09687 putative lyase; Provisional
Probab=99.06 E-value=3.1e-09 Score=119.81 Aligned_cols=259 Identities=17% Similarity=0.140 Sum_probs=182.7
Q ss_pred cccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHH
Q 000861 151 PFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDED 230 (1249)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~ 230 (1249)
++.|+...+...++++.|+. .-+..+...+.| ....+|..|+..|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~L~~~L~d-~d~~vR~~A~~aL~~~~~------ 52 (280)
T PRK09687 3 NSYKKRKASKEYSLYSQCKK-----------------------LNDDELFRLLDD-HNSLKRISSIRVLQLRGG------ 52 (280)
T ss_pred hhhhcchhhHHHHHHHHHhh-----------------------ccHHHHHHHHhC-CCHHHHHHHHHHHHhcCc------
Confidence 45566666666667666622 223445666677 888999999998887753
Q ss_pred HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCC-CCCCchhHHHHHHHHHHHHHHH
Q 000861 231 RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSML-PDDPEESVRICYASNIAKLALT 309 (1249)
Q Consensus 231 ~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l-~~D~~~~VR~~~A~~l~~LA~~ 309 (1249)
+.+++.+..|++|+++.||..|+..|.++-.--. . .+-.+|.|..+ .+|+++.||...+..|+.+...
T Consensus 53 --~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~----~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 53 --QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR----C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKK 121 (280)
T ss_pred --chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc
Confidence 5567888889999999999999999998653110 0 12366777755 7999999999998888876321
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchh
Q 000861 310 AYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGN 389 (1249)
Q Consensus 310 a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~ 389 (1249)
.. . . ...+.+.+..++ .|+++.||.+.+..|..
T Consensus 122 ~~--------------------------------------~---~----~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 122 NP--------------------------------------L---Y----SPKIVEQSQITA--FDKSTNVRFAVAFALSV 154 (280)
T ss_pred cc--------------------------------------c---c----chHHHHHHHHHh--hCCCHHHHHHHHHHHhc
Confidence 10 0 0 012233344445 47799999999998854
Q ss_pred hhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 000861 390 LCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILC 469 (1249)
Q Consensus 390 l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~ 469 (1249)
+. ++..+|.|+.+|+|++|.||..-+..+-.+ +.. .+...|.++++|.|+.+.||..|+..|..+-
T Consensus 155 ~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~~~--~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 155 IN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSN----KYD--NPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred cC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----CCC--CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 32 345779999999999999999888887776 222 2457888999999999999999999997732
Q ss_pred hcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhh
Q 000861 470 KSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLR 530 (1249)
Q Consensus 470 ~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~ 530 (1249)
. . ..++.++..+.+++ +|..++..+..+.. . ..+|.+..++.
T Consensus 221 ~------~---~av~~Li~~L~~~~--~~~~a~~ALg~ig~----~----~a~p~L~~l~~ 262 (280)
T PRK09687 221 D------K---RVLSVLIKELKKGT--VGDLIIEAAGELGD----K----TLLPVLDTLLY 262 (280)
T ss_pred C------h---hHHHHHHHHHcCCc--hHHHHHHHHHhcCC----H----hHHHHHHHHHh
Confidence 2 2 47788888888888 45556665555543 2 45677777765
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=2e-08 Score=109.82 Aligned_cols=155 Identities=13% Similarity=0.207 Sum_probs=115.1
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecC-CCCcEEEEEEecCCCCCccEEEEEECC
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASHMFMYSTQN 963 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~~L~sgs~d 963 (1249)
.+..++|++.-..++++..|-.|++|+-.. . ....++. ....|++++ |.|.+ +..++.|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss------t--------~pt~Lks~sQrnvtcla-wRPls--aselavgCr- 161 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS------T--------CPTKLKSVSQRNVTCLA-WRPLS--ASELAVGCR- 161 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC------C--------CCceecchhhcceeEEE-eccCC--cceeeeeec-
Confidence 467789998777889999999999999761 1 1111221 345799998 99996 446666664
Q ss_pred CeEEEEEcCCC------------ccceeeecCCCCCceEEEEEcCCCCEEEEEec-CCcEEEEeCCCCCcccccccCCCC
Q 000861 964 CGIHLWDTRSN------------SNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RGVLTLWDLRFLVPVNSWQYSQVC 1030 (1249)
Q Consensus 964 g~I~iwDlrt~------------~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG~I~lWDlr~~~~l~s~~~~~~~ 1030 (1249)
+.|.+|..... .....++.++| .+|+++.|.+||..+++++- |..|.+||..++..+.-... ..+
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glg 239 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLG 239 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCC
Confidence 56899976421 12233444444 78999999999999998875 56799999998877655432 445
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
.+.-+.| +|++. ++++++-|+..++|+..
T Consensus 240 g~slLkw-SPdgd---------~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 240 GFSLLKW-SPDGD---------VLFAATCDAVFRLWQEN 268 (445)
T ss_pred ceeeEEE-cCCCC---------EEEEecccceeeeehhc
Confidence 7889999 99998 99999999999999543
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.06 E-value=6.6e-08 Score=113.72 Aligned_cols=280 Identities=13% Similarity=0.065 Sum_probs=163.4
Q ss_pred CCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 816 IPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 816 ~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
....+.+ .+++.+.++..+.+.-..+.|+|||+++.+++.||.|.++|+.+.+. ..++... ....++++++|
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------v~~i~~G-~~~~~i~~s~D 88 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------VATIKVG-GNPRGIAVSPD 88 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------EEEEE-S-SEEEEEEE--T
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------EEEEecC-CCcceEEEcCC
Confidence 3455666 56789999987655545578999999999999999999999999873 3344443 34678999999
Q ss_pred CCEEEEEe-CCCeEEEEEccccccCCCccccccCccceeeecC-------CCCcEEEEEEecCCCCCcc-EEEEEECCCe
Q 000861 895 SAQVVVGA-CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT-------KEGAIVTLVNYNTDNCASH-MFMYSTQNCG 965 (1249)
Q Consensus 895 g~~Lasgs-~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~-------h~~~V~~l~~fs~d~~~g~-~L~sgs~dg~ 965 (1249)
|++++++. .++.+.++|.. + .+ .++.+.. ....+..+. .++. .. +++..-..+.
T Consensus 89 G~~~~v~n~~~~~v~v~D~~-t----le--------~v~~I~~~~~~~~~~~~Rv~aIv-~s~~---~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAE-T----LE--------PVKTIPTGGMPVDGPESRVAAIV-ASPG---RPEFVVNLKDTGE 151 (369)
T ss_dssp TTEEEEEEEETTEEEEEETT-T--------------EEEEEE--EE-TTTS---EEEEE-E-SS---SSEEEEEETTTTE
T ss_pred CCEEEEEecCCCceeEeccc-c----cc--------ceeecccccccccccCCCceeEE-ecCC---CCEEEEEEccCCe
Confidence 99998775 58999999987 1 21 2222221 344566776 5666 34 4444455689
Q ss_pred EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCCccccccc---CCCCC----------
Q 000861 966 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG-SSRGVLTLWDLRFLVPVNSWQY---SQVCP---------- 1031 (1249)
Q Consensus 966 I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg-s~dG~I~lWDlr~~~~l~s~~~---~~~~~---------- 1031 (1249)
|.+.|....+....-. ...........|+|++++++++ ..+..|.++|..+++.+..+.. +|..+
T Consensus 152 I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp EEEEETTTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred EEEEEeccccccceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 9999987765432211 1124567788999999987765 4567888999877654432211 01111
Q ss_pred -ee------------------------------EEEEEcCCCCCcccCCCCCEEEEE----ECCCeEEEEECCCCceeEE
Q 000861 1032 -IE------------------------------KMCLFVPPPNAAVSTTARPLIYVA----AGCNEVSLWNAENGSCHQV 1076 (1249)
Q Consensus 1032 -I~------------------------------~l~~~sp~g~~~~~~~~~~~l~t~----s~Dg~I~vWDl~tg~~~~~ 1076 (1249)
++ .+.. ...+-......+++++++. ...+.|.++|.++.+....
T Consensus 231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-
T ss_pred eEEeeccccceecccccCCccccchhhcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE
Confidence 11 1110 0000000112234477777 2346788888887755544
Q ss_pred EecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEE-eCCCcEEE
Q 000861 1077 LRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTG-GTDLKIRR 1153 (1249)
Q Consensus 1077 l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tg-s~Dg~Iri 1153 (1249)
+....+ ..+..+.|++|| ..++. ..++.|.+
T Consensus 310 i~~~~~----------------------------------------------~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 310 ITPGPG----------------------------------------------KRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp HHHHHT------------------------------------------------EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EeccCC----------------------------------------------CcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 432110 147889999999 33343 33448999
Q ss_pred EeCCCCCccEEEeC
Q 000861 1154 WDHCSPGRSYCICG 1167 (1249)
Q Consensus 1154 WDl~~~~~~~~l~g 1167 (1249)
||..+.+....+..
T Consensus 344 ~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 344 YDAKTLKEKKRIPV 357 (369)
T ss_dssp EETTTTEEEEEEE-
T ss_pred EECCCcEEEEEEEe
Confidence 99999998888763
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.7e-09 Score=114.79 Aligned_cols=220 Identities=12% Similarity=0.128 Sum_probs=157.3
Q ss_pred EeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC-EEEEEeCC--Ce
Q 000861 830 HLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA-QVVVGACD--GI 906 (1249)
Q Consensus 830 ~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~-~Lasgs~D--g~ 906 (1249)
+....+++|-.++... ..|++|-.+|.+.+|....+.... .....+..+ ..+..+.-++... .+++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hs--s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHS--SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhcC--CEEEEEecCCcEEEEeccCCcccc--ccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 4455667787777653 378889999999999988554110 112233333 4477777777554 45558888 88
Q ss_pred EEEEEccccccCCCccccccCccceeeecC--CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDT--KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAI 983 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~--h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~ 983 (1249)
+.+||++ .+.. -+++...-...-+ -.-+++++. |-+..+ ...+++++.-+.+++||.+.++. +..+..
T Consensus 175 lkiwdle-~~~q-----iw~aKNvpnD~L~LrVPvW~tdi~-Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~- 245 (412)
T KOG3881|consen 175 LKIWDLE-QSKQ-----IWSAKNVPNDRLGLRVPVWITDIR-FLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDF- 245 (412)
T ss_pred eeeeecc-ccee-----eeeccCCCCccccceeeeeeccce-ecCCCC-CceEEEEecceeEEEecCcccCcceeEecc-
Confidence 9999998 2211 1111100000000 012355666 666533 35899999999999999997654 444543
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeE
Q 000861 984 PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 984 ~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I 1063 (1249)
...+|+++...|+++++++|...|.+..||+|.++.+.....+..+.|+++.. +|.+. ++++|+-|+.+
T Consensus 246 -~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~-hp~~~---------~las~GLDRyv 314 (412)
T KOG3881|consen 246 -LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC-HPTHP---------VLASCGLDRYV 314 (412)
T ss_pred -ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE-cCCCc---------eEEeeccceeE
Confidence 57899999999999999999999999999999999888855578889999999 99987 99999999999
Q ss_pred EEEECCCCcee
Q 000861 1064 SLWNAENGSCH 1074 (1249)
Q Consensus 1064 ~vWDl~tg~~~ 1074 (1249)
+|+|+.+.+.+
T Consensus 315 RIhD~ktrkll 325 (412)
T KOG3881|consen 315 RIHDIKTRKLL 325 (412)
T ss_pred EEeecccchhh
Confidence 99999985543
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.05 E-value=3.4e-08 Score=106.74 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=150.4
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE-EEECC-
Q 000861 886 ALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM-YSTQN- 963 (1249)
Q Consensus 886 V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~-sgs~d- 963 (1249)
..+++|..|...+++|..+| .+||+.+.. ++. .-+......-.+..+. |-.+ +++ +|+.+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~----ke~-------~~r~~~~~G~~~veML-fR~N-----~laLVGGg~~ 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPF----KES-------ASRQFIDGGFKIVEML-FRSN-----YLALVGGGSR 69 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCch----hhh-------hhhccccCchhhhhHh-hhhc-----eEEEecCCCC
Confidence 55699999999999998888 799999821 110 0011111112233343 4333 443 33333
Q ss_pred -----CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC-CCCcccccccC-CCCCeeEEE
Q 000861 964 -----CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR-FLVPVNSWQYS-QVCPIEKMC 1036 (1249)
Q Consensus 964 -----g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr-~~~~l~s~~~~-~~~~I~~l~ 1036 (1249)
+.|.|||=...+++.++.. .++|.++.++++. +++. ..+.|.+|... ..+.+..+... ......++
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f---~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~- 142 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSF---NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL- 142 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEe---ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee-
Confidence 5799999766777777765 7899999998874 4444 35689999886 33334333211 11122222
Q ss_pred EEcCCCCCcccCCCCCEEEEEE-CCCeEEEEECCCCcee--EEEecccCCCCCCcccccccccCCCCCCCCCcccccccc
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNAENGSCH--QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl~tg~~~--~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~ 1113 (1249)
.|... ..+|+.-+ .-|.|.|-|+...+.- ..+
T Consensus 143 --~~~~~-------k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------------------------------------ 177 (346)
T KOG2111|consen 143 --CPTSN-------KSLLAFPGFKTGQVQIVDLASTKPNAPSII------------------------------------ 177 (346)
T ss_pred --cCCCC-------ceEEEcCCCccceEEEEEhhhcCcCCceEE------------------------------------
Confidence 33322 12333322 3578888887644321 111
Q ss_pred ccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCc-EEEEeCCCCCccEEEeCCCCCCCCCCcceeeccCCceEEee
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLK-IRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQ 1191 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~-IriWDl~~~~~~~~l~g~~~~~~~~~~~y~~~~~~~v~~~~ 1191 (1249)
..|...|.|++.+-+| .+||+|..|+ |||||..+++.+..+.-..
T Consensus 178 -----------~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------------------- 224 (346)
T KOG2111|consen 178 -----------NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------------------- 224 (346)
T ss_pred -----------EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----------------------
Confidence 3455589999999999 9999999886 6999999999877764221
Q ss_pred ccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEc
Q 000861 1192 ERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVW 1248 (1249)
Q Consensus 1192 e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVW 1248 (1249)
....|.+++ |+|+..+|+.+|+-|++.|+
T Consensus 225 ---------------------------d~A~iy~ia-FSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 225 ---------------------------DRADIYCIA-FSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred ---------------------------chheEEEEE-eCCCccEEEEEcCCCeEEEE
Confidence 245699999 99999999999999999987
No 240
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=6.4e-09 Score=117.28 Aligned_cols=253 Identities=13% Similarity=0.113 Sum_probs=180.5
Q ss_pred hHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHHHHHH
Q 000861 138 LQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRRAAIL 217 (1249)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ 217 (1249)
+..+++.| .|+-..||.-.+..|..+... -++..+...+.+ ..+..|..|+.
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~~~--------------------------~~~~~l~~ll~~-~d~~vR~~A~~ 76 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRGGQ--------------------------DVFRLAIELCSS-KNPIERDIGAD 76 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcCcc--------------------------hHHHHHHHHHhC-CCHHHHHHHHH
Confidence 34455555 455556887777666555321 233444555666 78899999999
Q ss_pred HHHHHhhcCChHHHHHhhHHHHHHh-cCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHH
Q 000861 218 LLKSSSLFIDDEDRLQRVLPHVIAM-LSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVR 296 (1249)
Q Consensus 218 ll~~l~~~~~de~~l~~ilP~~~~l-l~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR 296 (1249)
.|..|...- ...++.+|.+..+ ++|+++.||..|+..|..+...-. ....-+++.+..+..|+++.||
T Consensus 77 aLg~lg~~~---~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~~~~D~~~~VR 145 (280)
T PRK09687 77 ILSQLGMAK---RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP--------LYSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_pred HHHhcCCCc---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHhhCCCHHHH
Confidence 999976411 1146788998877 899999999999999998753211 1112255667777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000861 297 ICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQT 376 (1249)
Q Consensus 297 ~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~ 376 (1249)
.+.|..|+.+.. +...+.+..+| .|++
T Consensus 146 ~~a~~aLg~~~~---------------------------------------------------~~ai~~L~~~L--~d~~ 172 (280)
T PRK09687 146 FAVAFALSVIND---------------------------------------------------EAAIPLLINLL--KDPN 172 (280)
T ss_pred HHHHHHHhccCC---------------------------------------------------HHHHHHHHHHh--cCCC
Confidence 999888864420 23446677777 4788
Q ss_pred HHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHH
Q 000861 377 PSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEA 456 (1249)
Q Consensus 377 ~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~ 456 (1249)
++||...+..|..++. ......|.|+..++|.+|.||.+-+..+..+ |. ..-+|.+++.|.|+.
T Consensus 173 ~~VR~~A~~aLg~~~~------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~----~~av~~Li~~L~~~~-- 236 (280)
T PRK09687 173 GDVRNWAAFALNSNKY------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KD----KRVLSVLIKELKKGT-- 236 (280)
T ss_pred HHHHHHHHHHHhcCCC------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CC----hhHHHHHHHHHcCCc--
Confidence 9999999999988721 2335779999999999999999877766543 33 356888888899977
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhccccc-CCCHHHHHHHHHHHHH
Q 000861 457 VIVNALDCLAILCKSGYLRKRILLEMIERAFPLLC-YPSQWVRRSVVTFIAA 507 (1249)
Q Consensus 457 V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~-hpn~wiR~~~~~~i~~ 507 (1249)
|+..++..|.++-. + +.+|.+..++. +|+-.||..+++.+..
T Consensus 237 ~~~~a~~ALg~ig~------~---~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 VGDLIIEAAGELGD------K---TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhcCC------H---hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 77777777666432 3 47888888886 9999999999887653
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=9.6e-09 Score=109.93 Aligned_cols=116 Identities=12% Similarity=0.235 Sum_probs=89.1
Q ss_pred CCceEEEEEecCCCEEEEE--eCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE
Q 000861 883 GSRALCTMMLRHSAQVVVG--ACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 883 ~~~V~sl~fspdg~~Lasg--s~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg 960 (1249)
.++|.+++|+|+|+.|++. ..++.|.+||++ ++ .+..+ +...+..+. |+|+ |++++++
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~--------~i~~~--~~~~~n~i~-wsP~---G~~l~~~ 118 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GK--------KIFSF--GTQPRNTIS-WSPD---GRFLVLA 118 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc------cc--------EeEee--cCCCceEEE-ECCC---CCEEEEE
Confidence 3469999999999987654 456799999997 22 13333 345677888 9999 7899988
Q ss_pred EC---CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec------CCcEEEEeCCCCCcccc
Q 000861 961 TQ---NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS------RGVLTLWDLRFLVPVNS 1023 (1249)
Q Consensus 961 s~---dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~------dG~I~lWDlr~~~~l~s 1023 (1249)
+. .|.|.+||.++.+.+.+.+ ...++.++|+|+|+++++++. |+.++||+. .|+.+..
T Consensus 119 g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 74 4679999999887766553 345789999999999999875 678999998 5665554
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.98 E-value=3e-08 Score=106.15 Aligned_cols=156 Identities=15% Similarity=0.280 Sum_probs=110.5
Q ss_pred EEEEEecCCCEEEEEeC----------CCeEEEEEccccccCCCccccccCccceeeecC-CCCcEEEEEEecCCCCCcc
Q 000861 887 LCTMMLRHSAQVVVGAC----------DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 887 ~sl~fspdg~~Lasgs~----------Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~ 955 (1249)
..+.|+++|++|+.-.. -|...+|.++... ..+..+.. ..++|.+++ |+|+ |+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~------------~~~~~i~l~~~~~I~~~~-WsP~---g~ 72 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN------------IPVESIELKKEGPIHDVA-WSPN---GN 72 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC------------CccceeeccCCCceEEEE-ECcC---CC
Confidence 35788888887765332 2445666664111 12233333 345799999 9999 55
Q ss_pred EEEE--EECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec---CCcEEEEeCCCCCcccccccCCCC
Q 000861 956 MFMY--STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS---RGVLTLWDLRFLVPVNSWQYSQVC 1030 (1249)
Q Consensus 956 ~L~s--gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~---dG~I~lWDlr~~~~l~s~~~~~~~ 1030 (1249)
.+++ |..++.|.+||++ ++.+..+ +...+..+.|+|+|+++++|+. .|.|.+||.+..+.+.... | .
T Consensus 73 ~favi~g~~~~~v~lyd~~-~~~i~~~----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~ 144 (194)
T PF08662_consen 73 EFAVIYGSMPAKVTLYDVK-GKKIFSF----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-S 144 (194)
T ss_pred EEEEEEccCCcccEEEcCc-ccEeEee----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-C
Confidence 6544 4456799999997 5555444 3567789999999999999875 4679999999888887764 3 3
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEEC------CCeEEEEECCCCceeEEE
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAG------CNEVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~------Dg~I~vWDl~tg~~~~~l 1077 (1249)
.+..++| +|+|+ ++++++. |+.++||++. |+.+...
T Consensus 145 ~~t~~~W-sPdGr---------~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 145 DATDVEW-SPDGR---------YLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cEEEEEE-cCCCC---------EEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 4789999 99998 8888764 7889999985 7655443
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=3.8e-08 Score=106.89 Aligned_cols=278 Identities=14% Similarity=0.217 Sum_probs=175.8
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC------------CceEEEEEecCC--CEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG------------SRALCTMMLRHS--AQVV 899 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~------------~~V~sl~fspdg--~~La 899 (1249)
..+-|.++.|..+|.+||||..+|.|.++.-....+. .++-...+..|. ..|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3467899999999999999999999999976554321 333333444443 368889999865 4677
Q ss_pred EEeCCCeEEEEEccccccCCCc-----------c-----ccccC------ccceeee-cCCCCcEEEEEEecCCCCCccE
Q 000861 900 VGACDGIIHMFSVDHISRGLGN-----------V-----EKYSG------ISDIKKK-DTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 900 sgs~Dg~I~vwdv~~~~~~~g~-----------~-----~~~~~------~~~i~~l-~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
..+.|.+|++|.+......... + ..... ..+.+.+ ..|...|.++. ++.| +..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS-~NsD---~Et 178 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS-VNSD---KET 178 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee-ecCc---cce
Confidence 7789999999998632211100 0 00000 0112222 34666788887 8887 456
Q ss_pred EEEEECCCeEEEEEcCCCccceee-ecCCC-----CCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCccc----ccc
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTL-KAIPE-----EGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVN----SWQ 1025 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l-~~~~h-----~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~----s~~ 1025 (1249)
++++ .|=.|.+|++.--...+.+ ...++ ...|++..|+|.. ++++..++.|+|++-|+|...... .+.
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 6655 5789999998744333322 22222 2358899999954 788889999999999999432211 111
Q ss_pred -----------cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC-CeEEEEECC-CCceeEEEecccCCCCCCccccc
Q 000861 1026 -----------YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC-NEVSLWNAE-NGSCHQVLRTANYDGDTEMSDLP 1092 (1249)
Q Consensus 1026 -----------~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D-g~I~vWDl~-tg~~~~~l~~~~~~~~~~i~~l~ 1092 (1249)
.+--..|..+.| ++.|+ ++++ .| -+|++||+. ..+.+.++..+..... .+.+
T Consensus 258 epedp~~rsffseiIsSISDvKF-s~sGr---------yils--RDyltvk~wD~nme~~pv~t~~vh~~lr~-kLc~-- 322 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKF-SHSGR---------YILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRS-KLCS-- 322 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEE-ccCCc---------EEEE--eccceeEEEeccccCCcceEEeehHhHHH-HHHH--
Confidence 112246888999 88888 5543 44 689999994 4566666665433100 0000
Q ss_pred ccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1093 WAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1093 ~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
+....... .-..++|+.++ +++||+.....++++...+..
T Consensus 323 ----------------------------lYEnD~If-dKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 323 ----------------------------LYENDAIF-DKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ----------------------------Hhhccchh-heeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 00000000 22457788887 999999999999999776654
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=3.6e-08 Score=105.35 Aligned_cols=198 Identities=13% Similarity=0.154 Sum_probs=139.6
Q ss_pred EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCc
Q 000861 849 FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGI 928 (1249)
Q Consensus 849 ~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~ 928 (1249)
.++-+-.+|.|.++.....+....+++............++.|++.+..++++-.+|.+.+-+.. .. ..
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t-----~~------~l 155 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET-----EM------VL 155 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc-----ee------ee
Confidence 34556667888888766555333222221111111135678899999999999999999854443 11 12
Q ss_pred cceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcC-CCccceeeecCCCCCceEEEEEcC-CCCEEEEEec
Q 000861 929 SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTR-SNSNTWTLKAIPEEGYVSSLVTGP-CGNWFVSGSS 1006 (1249)
Q Consensus 929 ~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlr-t~~~~~~l~~~~h~~~I~sl~~sp-dg~~L~sgs~ 1006 (1249)
+.+..++.|+-+++... |+...++ ++++|+.||.+..||+| .++.++.- ...|...|.++.-+| .+.++++|+.
T Consensus 156 e~vq~wk~He~E~Wta~-f~~~~pn--lvytGgDD~~l~~~D~R~p~~~i~~n-~kvH~~GV~SI~ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAK-FSDKEPN--LVYTGGDDGSLSCWDIRIPKTFIWHN-SKVHTSGVVSIYSSPPKPTYIATGSY 231 (339)
T ss_pred eecccccccceeeeeee-cccCCCc--eEEecCCCceEEEEEecCCcceeeec-ceeeecceEEEecCCCCCceEEEecc
Confidence 34567888998888887 8776543 99999999999999999 34444442 245888999998887 5789999999
Q ss_pred CCcEEEEeCC-CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 1007 RGVLTLWDLR-FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 1007 dG~I~lWDlr-~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
|-.|++||.| -++++..-. -.+.|.++.. +|.-. ..+++++.-+-.+|-+.+.+.
T Consensus 232 De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~-~p~~~--------~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKPLFKAK--VGGGVWRIKH-HPEIF--------HRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ccceeeeehhcccCccccCc--cccceEEEEe-cchhh--------hHHHHHHHhcCceEEEecccc
Confidence 9999999999 678887644 4578999999 88754 245555565667777776543
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.8e-07 Score=113.65 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=137.2
Q ss_pred ccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC
Q 000861 820 GWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA 896 (1249)
Q Consensus 820 ~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~ 896 (1249)
+++.+|.....+..|...+...+|+|||+.|+..+.+ ..|.+||+.+++. ..+....+.+....|+|+|+
T Consensus 183 ~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-------~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 183 RSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-------EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-------EEccCCCCCcCCeEECCCCC
Confidence 4456676667777888899999999999988876644 3588899988752 12222233455789999999
Q ss_pred EEEE-EeCCC--eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-C--CeEEEEE
Q 000861 897 QVVV-GACDG--IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-N--CGIHLWD 970 (1249)
Q Consensus 897 ~Las-gs~Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-d--g~I~iwD 970 (1249)
.|+. .+.+| .|++||++ .+. .+.+..+.+...... |+|+ |+.++..+. + ..|+++|
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~-----~~~---------~~~lt~~~~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLA-----SRQ---------LSRVTNHPAIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred EEEEEEccCCCceEEEEECC-----CCC---------eEEcccCCCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEE
Confidence 8874 44555 57777776 122 122222333344555 9999 666666554 3 3688888
Q ss_pred cCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCccc
Q 000861 971 TRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-G--VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 971 lrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G--~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
+.+++.. .+... ........|+|+|++++..+.+ | .|.+||+.++.... +... .......| +|+|+
T Consensus 318 ~~~g~~~-~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~-spdg~---- 386 (430)
T PRK00178 318 VNGGRAE-RVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSV-APNGT---- 386 (430)
T ss_pred CCCCCEE-EeecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceE-CCCCC----
Confidence 8877643 23221 2233457899999999877653 3 48889998775432 2221 12234578 99998
Q ss_pred CCCCCEEEEEECC---CeEEEEECCCCceeEEEe
Q 000861 1048 TTARPLIYVAAGC---NEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1048 ~~~~~~l~t~s~D---g~I~vWDl~tg~~~~~l~ 1078 (1249)
+++.++.+ ..+.+++.. |...+.+.
T Consensus 387 -----~i~~~~~~~g~~~l~~~~~~-g~~~~~l~ 414 (430)
T PRK00178 387 -----MLIYATRQQGRGVLMLVSIN-GRVRLPLP 414 (430)
T ss_pred -----EEEEEEecCCceEEEEEECC-CCceEECc
Confidence 66655543 347777875 44333443
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=2.3e-08 Score=122.65 Aligned_cols=198 Identities=15% Similarity=0.263 Sum_probs=146.8
Q ss_pred CceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCc-EE--EEEEecCCCCCccEEEEE
Q 000861 884 SRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGA-IV--TLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 884 ~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~-V~--~l~~fs~d~~~g~~L~sg 960 (1249)
..|....+..+...++.++.+..+.+||.. . +.+ +......+.. .. .+..++++ .-++++|
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~-~----~~~--------~~~i~~~er~~l~~~~~~g~s~~---~~~i~~g 151 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSK-N----SSV--------LSKIQSDERCTLYSSLIIGDSAE---ELYIASG 151 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecc-c----Cce--------ehhcCCCceEEEEeEEEEeccCc---EEEEEec
Confidence 344455556677788999999999999987 1 111 1111111111 11 11124444 5589999
Q ss_pred ECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcC
Q 000861 961 TQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 961 s~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
+.-+.|.+|+........ ...+|.|.|.++.++.||+++++.+.|.++++|++.+++.......+|..+|..+++ +|
T Consensus 152 sv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~-~~ 228 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF-LP 228 (967)
T ss_pred cccccEEEEeccccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe-cc
Confidence 999999999998433332 236799999999999999999999999999999999988877555679999999999 77
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccc
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDE 1120 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~ 1120 (1249)
+ .+++++.|-+.++|+.. +....++..+.+
T Consensus 229 n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g-------------------------------------- 258 (967)
T KOG0974|consen 229 N-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-------------------------------------- 258 (967)
T ss_pred c-----------eeEEeccceEEEEEecc-cceehhhhhhhh--------------------------------------
Confidence 6 48999999999999765 444445553332
Q ss_pred cCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCC
Q 000861 1121 LNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1121 ~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~ 1158 (1249)
..++.++..++. .++|++.|+.+++||+..
T Consensus 259 --------~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 259 --------KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --------cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 178888888887 999999999999999864
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.93 E-value=1.3e-07 Score=114.29 Aligned_cols=216 Identities=15% Similarity=0.080 Sum_probs=140.5
Q ss_pred ccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCC
Q 000861 820 GWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA 896 (1249)
Q Consensus 820 ~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~ 896 (1249)
+|+.+|.....+..+...+.+.+|+|||++++.++.+ ..|.+||+.++.. .....+.+.+.+++|+|+|+
T Consensus 174 ~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 174 VADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-------EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred EEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-------EEeecCCCCccceEECCCCC
Confidence 4556666667777788889999999999999887654 4799999988752 12333445577899999998
Q ss_pred EEEE-EeCCC--eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC-C--eEEEEE
Q 000861 897 QVVV-GACDG--IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN-C--GIHLWD 970 (1249)
Q Consensus 897 ~Las-gs~Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d-g--~I~iwD 970 (1249)
.|+. .+.++ .|++|++. .+. .+.+..+.+...... |+|+ ++.++.++.. + .|++||
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~-----~~~---------~~~l~~~~~~~~~~~-~s~d---g~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLD-----GKQ---------LTRLTNGPGIDTEPS-WSPD---GKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred EEEEEECCCCCccEEEEECC-----CCC---------EEECCCCCCCCCCEE-ECCC---CCEEEEEECCCCCceEEEEE
Confidence 7765 44444 47777776 121 122222333333455 8898 6677666543 3 688889
Q ss_pred cCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC---cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCccc
Q 000861 971 TRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG---VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 971 lrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG---~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
+.+++.. .+. .+...+....|+|+|++++.++.++ .|.+||+.++.... +.. ........| +|++.
T Consensus 309 ~~~~~~~-~l~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~--~~~~~~p~~-spdg~---- 377 (417)
T TIGR02800 309 ADGGEVR-RLT--FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD--TGLDESPSF-APNGR---- 377 (417)
T ss_pred CCCCCEE-Eee--cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC--CCCCCCceE-CCCCC----
Confidence 8876543 332 2345677889999999999888776 79999998754322 221 122345578 99987
Q ss_pred CCCCCEEEEEECCC---eEEEEECCCCceeEEE
Q 000861 1048 TTARPLIYVAAGCN---EVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg---~I~vWDl~tg~~~~~l 1077 (1249)
+|+.++.++ .+.+.+.. |.....+
T Consensus 378 -----~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 378 -----MILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred -----EEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 666665543 35555543 4433333
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.3e-07 Score=112.76 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=117.6
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC---CCeEEEEEccccccCCCccccccCccceee
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC---DGIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~---Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
..|.+||..... ...+..|...+.+..|+|||+.|+..+. +..|.+||+. .+. .+.
T Consensus 182 ~~l~~~d~dg~~-------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-----~g~---------~~~ 240 (435)
T PRK05137 182 KRLAIMDQDGAN-------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-----TGQ---------REL 240 (435)
T ss_pred eEEEEECCCCCC-------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-----CCc---------EEE
Confidence 478888876543 2345567778999999999999888764 4689999987 122 122
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEE-EEECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CC-
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFM-YSTQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RG- 1008 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~-sgs~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG- 1008 (1249)
+..+.+.+.... |+|+ |+.++ +.+.+| .|++||+.+++.. .+ ..+.+...+..|+|||++++..+. +|
T Consensus 241 l~~~~g~~~~~~-~SPD---G~~la~~~~~~g~~~Iy~~d~~~~~~~-~L--t~~~~~~~~~~~spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 241 VGNFPGMTFAPR-FSPD---GRKVVMSLSQGGNTDIYTMDLRSGTTT-RL--TDSPAIDTSPSYSPDGSQIVFESDRSGS 313 (435)
T ss_pred eecCCCcccCcE-ECCC---CCEEEEEEecCCCceEEEEECCCCceE-Ec--cCCCCccCceeEcCCCCEEEEEECCCCC
Confidence 333445566666 9999 55554 555554 4888899887653 33 234556778899999999887764 33
Q ss_pred -cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC---CeEEEEECCCC
Q 000861 1009 -VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC---NEVSLWNAENG 1071 (1249)
Q Consensus 1009 -~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D---g~I~vWDl~tg 1071 (1249)
.|.+||+..+... .+.. +...+....| +|+|+ +|+..+.+ ..|.+||..++
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~-~~~~~~~~~~-SpdG~---------~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISF-GGGRYSTPVW-SPRGD---------LIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CeEEEEECCCCCeE-Eeec-CCCcccCeEE-CCCCC---------EEEEEEcCCCceEEEEEECCCC
Confidence 5888888655443 3332 2344666789 99998 67666543 35788887544
No 249
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.3e-07 Score=114.77 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=116.7
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEccccccCCCccccccCccceee
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
.+|.+||..... ...+..+...+.+..|+|+|+.|+.++.+ ..|.+|++. .++. +.
T Consensus 184 ~~l~i~D~~g~~-------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~-----~g~~---------~~ 242 (433)
T PRK04922 184 YALQVADSDGYN-------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA-----TGQR---------EL 242 (433)
T ss_pred EEEEEECCCCCC-------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-----CCCE---------EE
Confidence 468899986543 22445566679999999999999987643 468999987 1221 11
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEE-EEECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CCc
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFM-YSTQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RGV 1009 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~-sgs~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG~ 1009 (1249)
+....+...+.. |+|+ |+.++ +.+.+| .|++||+.+++.. .+ ..+.+.....+|+|||++++.++. +|.
T Consensus 243 l~~~~g~~~~~~-~SpD---G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l--t~~~~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 VASFRGINGAPS-FSPD---GRRLALTLSRDGNPEIYVMDLGSRQLT-RL--TNHFGIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred eccCCCCccCce-ECCC---CCEEEEEEeCCCCceEEEEECCCCCeE-EC--ccCCCCccceEECCCCCEEEEEECCCCC
Confidence 222233344566 9999 55554 455555 6999999887643 33 224445677899999999887764 444
Q ss_pred --EEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC---eEEEEECCCCcee
Q 000861 1010 --LTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN---EVSLWNAENGSCH 1074 (1249)
Q Consensus 1010 --I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg---~I~vWDl~tg~~~ 1074 (1249)
|.++|+..+..... .. +........| +|+|+ +|+..+.++ .|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~~~l-t~-~g~~~~~~~~-SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSAERL-TF-QGNYNARASV-SPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCeEEe-ec-CCCCccCEEE-CCCCC---------EEEEEECCCCceeEEEEECCCCCeE
Confidence 66677766654322 21 2233456889 99998 776665433 5999999877643
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=4.4e-08 Score=106.41 Aligned_cols=249 Identities=17% Similarity=0.204 Sum_probs=159.4
Q ss_pred CCCCCCCCCCccccccCCCCCccC--CCCc----EEEEeccc------------cCceeEEEEcCCCC--EEEEEECCCc
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR--PRGI----LVAHLQEH------------CSAVNEIAISHDHS--FFVSASDDST 858 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~--~~G~----lv~~L~~H------------~~~V~~la~spdg~--~laTgs~Dgt 858 (1249)
.++|...|..++.+..++..-++. ...+ ....++.| ...|+.+.|.++++ .|...+.|.+
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 466777777776655444333333 1111 34445445 34699999998764 6777789999
Q ss_pred EEEEECCCCcccc-----------------------------ccceeeEe-eccCCceEEEEEecCCCEEEEEeCCCeEE
Q 000861 859 VKVWDSRKLEKDI-----------------------------SFRSRLTY-HLEGSRALCTMMLRHSAQVVVGACDGIIH 908 (1249)
Q Consensus 859 VkIWD~~~~~~~~-----------------------------~~~~~~t~-~~h~~~V~sl~fspdg~~Lasgs~Dg~I~ 908 (1249)
|++|.+....... ...++..+ .+|.--|.++.+..|+..++++ .|=.|.
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRIN 188 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRIN 188 (433)
T ss_pred eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeee
Confidence 9999876432111 11122233 2467779999999999888886 467799
Q ss_pred EEEccccccCCCccccccCccceeeecCCC-----CcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc----ee
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKE-----GAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT----WT 979 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~-----~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~----~~ 979 (1249)
+|+++...+. - .+..++.+. .-|++.. |+|.. ..++++.+..|+|++-|+|..... ..
T Consensus 189 LWnlei~d~s-F---------nIVDIKP~nmEeLteVITsaE-Fhp~~--cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 189 LWNLEIIDQS-F---------NIVDIKPANMEELTEVITSAE-FHPHH--CNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eccccccCCc-e---------eEEEccccCHHHHHHHHhhhc-cCHhH--ccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 9999832211 1 122222222 2355555 99986 459999999999999999954221 11
Q ss_pred eecC--C--------CCCceEEEEEcCCCCEEEEEecCCcEEEEeC-CCCCcccccccCCC------------CCe---e
Q 000861 980 LKAI--P--------EEGYVSSLVTGPCGNWFVSGSSRGVLTLWDL-RFLVPVNSWQYSQV------------CPI---E 1033 (1249)
Q Consensus 980 l~~~--~--------h~~~I~sl~~spdg~~L~sgs~dG~I~lWDl-r~~~~l~s~~~~~~------------~~I---~ 1033 (1249)
+..+ + --..|..+.|+++|+++++-.. -+|++||+ ...+++.+++. |. ..| .
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhhee
Confidence 1111 1 1135888999999999987654 48999999 45666666543 21 112 3
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCce
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~ 1073 (1249)
.++| +.++. ++++|+..+-+++++...|..
T Consensus 334 ec~~-sg~~~---------~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 334 ECSW-SGNDS---------YVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEE-cCCcc---------eEecccccceEEEecCCCCcc
Confidence 4566 55554 899999999999999876653
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=3.4e-06 Score=99.21 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=146.6
Q ss_pred EEEEECC----CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC----CCeEEEEEccccccCCCc
Q 000861 850 FVSASDD----STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC----DGIIHMFSVDHISRGLGN 921 (1249)
Q Consensus 850 laTgs~D----gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~----Dg~I~vwdv~~~~~~~g~ 921 (1249)
++.|+.. +.|.+|++...... +....... .......++++|++++|.++.. +|.|..|+++... +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~--l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGT--LTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTE--EEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCC--ceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ce
Confidence 4455555 68888888332211 11122222 2334677899999999998876 5799999988210 22
Q ss_pred cccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEEEEEcCC-Ccccee---eec--------CCCCCc
Q 000861 922 VEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIHLWDTRS-NSNTWT---LKA--------IPEEGY 988 (1249)
Q Consensus 922 ~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~iwDlrt-~~~~~~---l~~--------~~h~~~ 988 (1249)
+ ..+............++ ++++ +++++++. .+|.|.++++.. +..... +.. ......
T Consensus 76 L------~~~~~~~~~g~~p~~i~-~~~~---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 76 L------TLLNSVPSGGSSPCHIA-VDPD---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp E------EEEEEEEESSSCEEEEE-ECTT---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred e------EEeeeeccCCCCcEEEE-EecC---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 2 12333332334455666 8898 67777776 489999999987 333222 111 012345
Q ss_pred eEEEEEcCCCCEEEEEec-CCcEEEEeCCCCC--c--ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCe
Q 000861 989 VSSLVTGPCGNWFVSGSS-RGVLTLWDLRFLV--P--VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNE 1062 (1249)
Q Consensus 989 I~sl~~spdg~~L~sgs~-dG~I~lWDlr~~~--~--l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~ 1062 (1249)
..++.++|+++++++... ...|.+|++.... . ...+..+....-+.+.| +|+++ ++++..+ +++
T Consensus 146 ~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f-~pdg~---------~~Yv~~e~s~~ 215 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF-SPDGK---------YAYVVNELSNT 215 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSS---------EEEEEETTTTE
T ss_pred ceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE-cCCcC---------EEEEecCCCCc
Confidence 789999999998888654 3479999987654 2 22334456667899999 99988 7777765 678
Q ss_pred EEEEECC--CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC
Q 000861 1063 VSLWNAE--NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG 1140 (1249)
Q Consensus 1063 I~vWDl~--tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg 1140 (1249)
|.++++. ++.. ........ ++- ..........++++|||
T Consensus 216 v~v~~~~~~~g~~-~~~~~~~~--------~~~------------------------------~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 216 VSVFDYDPSDGSL-TEIQTIST--------LPE------------------------------GFTGENAPAEIAISPDG 256 (345)
T ss_dssp EEEEEEETTTTEE-EEEEEEES--------CET------------------------------TSCSSSSEEEEEE-TTS
T ss_pred EEEEeecccCCce-eEEEEeee--------ccc------------------------------cccccCCceeEEEecCC
Confidence 9999988 4432 22221110 000 00000156789999999
Q ss_pred -e-EEEEeCCCcEEEEeCC
Q 000861 1141 -D-LLTGGTDLKIRRWDHC 1157 (1249)
Q Consensus 1141 -~-L~tgs~Dg~IriWDl~ 1157 (1249)
+ +++...++.|.+|++.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SEEEEEECTTTEEEEEEEC
T ss_pred CEEEEEeccCCEEEEEEEe
Confidence 4 4455567899999994
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=6.6e-09 Score=117.65 Aligned_cols=181 Identities=13% Similarity=0.172 Sum_probs=135.2
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCcc
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASH 955 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~ 955 (1249)
...|.+|...|..+.-..+.+.+++++.|.+|++|.+...+... ....+..++..|..+|.++. |-.+ -+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------~tsaCQfTY~aHkk~i~~ig-fL~~---lr 797 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------GTSACQFTYQAHKKPIHDIG-FLAD---LR 797 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------ccceeeeEhhhccCccccee-eeec---cc
Confidence 45788999999999888899999999999999999998322111 12234566788999999998 7776 23
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcC--CCCEEEEE-ecCCcEEEEeCCCCCcccccccC----C
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGP--CGNWFVSG-SSRGVLTLWDLRFLVPVNSWQYS----Q 1028 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~sp--dg~~L~sg-s~dG~I~lWDlr~~~~l~s~~~~----~ 1028 (1249)
.+ ++.||.|++||.--++.+..+...+.++.+..+..-+ +...++.| +...+|+++|.|.......|+.. .
T Consensus 798 ~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 798 SI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 44 4568999999998887766554444455555554444 34455555 67889999999998877776542 3
Q ss_pred CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1029 VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1029 ~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.+-+++++. .|.|+ +++++-.+|+|.+.|.++|..+..++
T Consensus 876 na~~R~iaV-a~~GN---------~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 876 NALTRAIAV-ADKGN---------KLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred chheeEEEe-ccCcc---------hhhHHhcCCcEEEEecCCCceeccCC
Confidence 345788888 88887 89999999999999999998766555
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.6e-07 Score=110.99 Aligned_cols=216 Identities=11% Similarity=0.013 Sum_probs=133.1
Q ss_pred cCCCCcEEEEeccccCceeEEEEcCCCCEEEEEEC-CC--cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 821 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASD-DS--TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 821 W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~-Dg--tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
++..|.-.+.+..+...+.+..|+|||+.++..+. ++ .|.+||+.+++.. .+....+......|+|||+.
T Consensus 203 ~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 203 ADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------EecCCCCCcCCeeECCCCCE
Confidence 35666656677778889999999999998887654 33 5888898877521 11212233457899999998
Q ss_pred EEE-EeCCCe--EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-C--CeEEEEEc
Q 000861 898 VVV-GACDGI--IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-N--CGIHLWDT 971 (1249)
Q Consensus 898 Las-gs~Dg~--I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-d--g~I~iwDl 971 (1249)
|+. .+.+|. |.+||++ .++ .+.+..+........ |+|+ ++.++..+. + ..|+++|+
T Consensus 276 La~~~~~~g~~~Iy~~dl~-----tg~---------~~~lt~~~~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIA-----TKA---------LTRITRHRAIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred EEEEEeCCCCeEEEEEECC-----CCC---------eEECccCCCCccceE-ECCC---CCEEEEEECCCCCceEEEEEC
Confidence 875 566776 5555655 122 223333334445566 9999 566666553 3 35777788
Q ss_pred CCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccC
Q 000861 972 RSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-G--VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVST 1048 (1249)
Q Consensus 972 rt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G--~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~ 1048 (1249)
.+++.. .+... .......+|+|||++++..+.+ + .|.++|+.++.... +... .......| +|+|+
T Consensus 338 ~~g~~~-~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~-spdG~----- 405 (448)
T PRK04792 338 ASGKVS-RLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSV-APNGT----- 405 (448)
T ss_pred CCCCEE-EEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceE-CCCCC-----
Confidence 777643 33222 2233456899999998876653 4 45667887765432 2211 11224478 99988
Q ss_pred CCCCEEEEEEC-CC--eEEEEECCCCceeEEEe
Q 000861 1049 TARPLIYVAAG-CN--EVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1049 ~~~~~l~t~s~-Dg--~I~vWDl~tg~~~~~l~ 1078 (1249)
.|+..+. ++ .+.+++. +|.....+.
T Consensus 406 ----~I~~~~~~~g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 406 ----MVIYSTTYQGKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred ----EEEEEEecCCceEEEEEEC-CCCceEECc
Confidence 5555543 33 4777787 466555554
No 254
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=4.1e-07 Score=110.07 Aligned_cols=178 Identities=7% Similarity=0.085 Sum_probs=110.7
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEccccccCCCccccccCccceee
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
..+.+||..... ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+. .++. ..
T Consensus 176 ~~L~~~D~dG~~-------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~-----~g~~---------~~ 234 (427)
T PRK02889 176 YQLQISDADGQN-------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA-----TGRR---------RV 234 (427)
T ss_pred cEEEEECCCCCC-------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC-----CCCE---------EE
Confidence 456667764332 22344566779999999999999887643 458999987 1221 11
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEE-EEECCCeEEEEE--cCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CCc
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFM-YSTQNCGIHLWD--TRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RGV 1009 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~-sgs~dg~I~iwD--lrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG~ 1009 (1249)
+....+...... |+|| |+.++ +.+.+|...+|. +.++. ...+. .+.+...+..|+|||++++..+. +|.
T Consensus 235 l~~~~g~~~~~~-~SPD---G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~ 307 (427)
T PRK02889 235 VANFKGSNSAPA-WSPD---GRTLAVALSRDGNSQIYTVNADGSG-LRRLT--QSSGIDTEPFFSPDGRSIYFTSDRGGA 307 (427)
T ss_pred eecCCCCccceE-ECCC---CCEEEEEEccCCCceEEEEECCCCC-cEECC--CCCCCCcCeEEcCCCCEEEEEecCCCC
Confidence 222334455666 9999 55665 556677655554 44443 33332 24455677899999998886654 466
Q ss_pred EEEEeC--CCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC---eEEEEECCCCcee
Q 000861 1010 LTLWDL--RFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN---EVSLWNAENGSCH 1074 (1249)
Q Consensus 1010 I~lWDl--r~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg---~I~vWDl~tg~~~ 1074 (1249)
..+|.+ ..+.... +.. .........| +|+|+ +|+.++.++ .|.+||+.+++..
T Consensus 308 ~~Iy~~~~~~g~~~~-lt~-~g~~~~~~~~-SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 308 PQIYRMPASGGAAQR-VTF-TGSYNTSPRI-SPDGK---------LLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cEEEEEECCCCceEE-Eec-CCCCcCceEE-CCCCC---------EEEEEEccCCcEEEEEEECCCCCeE
Confidence 666654 3443222 111 1223345788 99998 777666543 6999999887643
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=109.80 Aligned_cols=165 Identities=12% Similarity=0.176 Sum_probs=125.5
Q ss_pred cCCCEEEEEeCCCeEEEEEccccccCCCcc-ccccCccceeeecCCCCcEEEEEEec------CC-----------CCCc
Q 000861 893 RHSAQVVVGACDGIIHMFSVDHISRGLGNV-EKYSGISDIKKKDTKEGAIVTLVNYN------TD-----------NCAS 954 (1249)
Q Consensus 893 pdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~-~~~~~~~~i~~l~~h~~~V~~l~~fs------~d-----------~~~g 954 (1249)
|...++|....||.+++|+... +++ ..|. +.... .+.+++.. |. |- ..+.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-----~~~~~e~~---p~~~~---s~t~~~~~-w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-----NQLQQEFA---PIASL---SGTCTYTK-WGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-----ceeeeeec---cchhc---cCcceeEE-EEEEeccchHHHHhHHHHhhccCCc
Confidence 4567899999999999999982 222 1111 11111 12222222 11 10 0013
Q ss_pred cEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeE
Q 000861 955 HMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEK 1034 (1249)
Q Consensus 955 ~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~ 1034 (1249)
..++-|+..|.|.+|+...++..+.+....|.+.|.++.++.+-..|.+++.|+.+..|+......+..|.. ....+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccce
Confidence 478889999999999999999999998888999999999999989999999999999999999999998875 5557889
Q ss_pred EEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccC
Q 000861 1035 MCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANY 1082 (1249)
Q Consensus 1035 l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~ 1082 (1249)
+++ +|+|. .+++| .++|++||+++++.+..|.+|.+
T Consensus 150 l~i-s~D~~---------~l~~a--s~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 150 LCI-SPDGK---------ILLTA--SRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred EEE-cCCCC---------EEEec--cceEEEEEccCceEEEEecCCCc
Confidence 999 99988 55554 57899999999999888875443
No 256
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2e-07 Score=116.63 Aligned_cols=401 Identities=16% Similarity=0.175 Sum_probs=266.7
Q ss_pred CCCCCCCCCccccccc----cccccccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCC
Q 000861 112 PMPEDVPNSTFSQDLR----NSSVESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSM 187 (1249)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1249)
|-+|.-|+--+++.+. .++.....+.-.++-..+.+...++||+---+...+++... -
T Consensus 51 p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~------------------l 112 (1075)
T KOG2171|consen 51 PQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND------------------L 112 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc------------------c
Confidence 4455555544444443 23334444455667777799999999999999999998877 2
Q ss_pred CcccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHH--HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccc
Q 000861 188 KCEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDED--RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLV 265 (1249)
Q Consensus 188 ~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~--~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v 265 (1249)
.+ .=-=+++++..|..+ ..+..|.+|+-+|..+.+.++... .++.+++.|.+-+.|++..||.+|++++..+....
T Consensus 113 ~e-~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 113 PE-KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred cc-chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 22 333489999999999 999999999999999999998653 68899999999999998889999999999998877
Q ss_pred cccCCCCCcchhhchhhhc----cCCCCCCchhHHHHHHHHHHHHHHHHHHHHH----HHHH----hhhcccccccCCCC
Q 000861 266 RNFPPSDAKIFPEYILPML----SMLPDDPEESVRICYASNIAKLALTAYGFLV----HSIR----LSEAGVLDKLSAPH 333 (1249)
Q Consensus 266 ~~~~~~~~~if~eyilP~l----~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~----~~~~----~~~~~~~~~~~~~~ 333 (1249)
+ ...+....|-. +||.+ ..++++.+.-+-...=++|..|++...|++. ..-. +.....++.+
T Consensus 191 ~-~~~~~~~~~~~-llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~---- 264 (1075)
T KOG2171|consen 191 E-NNKSEVDKFRD-LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENS---- 264 (1075)
T ss_pred c-cchHHHHHHHH-HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHH----
Confidence 5 11112222222 56643 4445555544444445666666666555542 1111 1111111100
Q ss_pred CCCCCCCcchhhh----hcc-ch----hHHHHHHHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHhchhh
Q 000861 334 KSPSSSNETSVQL----QRL-NA----DVQLSQLRKSIAEVVQELVMGP--------------KQTPSIRRALLQDIGNL 390 (1249)
Q Consensus 334 ~~~~~~~~~~~~~----~~~-~~----~~~~~~~~~~l~~~~~~Ll~~~--------------D~~~~Vr~all~~i~~l 390 (1249)
.+-.. ..+ .+ -.-...+...|.+.+..+.++- |.+..-.+...+.|.+|
T Consensus 265 --------~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl 336 (1075)
T KOG2171|consen 265 --------IRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL 336 (1075)
T ss_pred --------HHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Confidence 00000 000 00 0000113344555555544321 11234667788889999
Q ss_pred hhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhh--HHHhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000861 391 CSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERS--VEEYLLPYIEQALSDATEAVIVNALDCLAIL 468 (1249)
Q Consensus 391 ~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~--~~~~llPll~q~L~D~~e~V~~~~l~~l~~l 468 (1249)
+--+|....--.+++|+..++...+|.-|.|-.-+|.-++.==+..- --..|+|.++.+|.||++.||.+|++++.++
T Consensus 337 A~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 337 ALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred HhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888774322211 1257899999999999999999999999999
Q ss_pred Hhc--CCCchHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCcCCHHHHHhc
Q 000861 469 CKS--GYLRKRILLEMIERAFPLLCYP-SQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASLASVKALLSC 545 (1249)
Q Consensus 469 ~~~--gl~~~~~~~~l~~~~~~ll~hp-n~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~~~ll~~ 545 (1249)
..- -.++|..---+++..+..+..+ |.+|-..+...+..++.......+ .|++-.++.. ++-.
T Consensus 417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l----~pYLd~lm~~----------~l~~ 482 (1075)
T KOG2171|consen 417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL----EPYLDGLMEK----------KLLL 482 (1075)
T ss_pred hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH----HHHHHHHHHH----------HHHH
Confidence 885 3445554445555666777777 779999988888888877665433 3333333322 3455
Q ss_pred cCCCCcHHHHHHHHH
Q 000861 546 LKPPVSREVFYQVLE 560 (1249)
Q Consensus 546 l~~PlsR~vf~~~~~ 560 (1249)
|..+=++.|-+++++
T Consensus 483 L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVT 497 (1075)
T ss_pred HhcCCchhHHHHHHH
Confidence 677777778888876
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=6.5e-07 Score=103.57 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=162.0
Q ss_pred CCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-
Q 000861 818 DSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS- 895 (1249)
Q Consensus 818 ~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg- 895 (1249)
..+|+ .+|..+..++.-...=++..|++|..+.|- -..+.|.+|+...-. ...-..|...|+.+.++|.+
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~-------~~~~kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFK-------TIQHKLSVSGITMLSLSPGPE 178 (566)
T ss_pred eeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcc-------ceeeeeeccceeeEEecCCCC
Confidence 45888 567777777654433368999998764432 223679999988733 12334467789999999974
Q ss_pred -CEEEE-----EeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-------
Q 000861 896 -AQVVV-----GACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ------- 962 (1249)
Q Consensus 896 -~~Las-----gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~------- 962 (1249)
..+|+ .|.-+.+++|... .......+ ..+.+ ....-..+. |++.+.. +|+.++.
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~-~~~~~~~~-------a~ksF--Fkadkvqm~-WN~~gt~--LLvLastdVDktn~ 245 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYP-EEGQHQPV-------ANKSF--FKADKVQMK-WNKLGTA--LLVLASTDVDKTNA 245 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccc-cccccchh-------hhccc--cccceeEEE-eccCCce--EEEEEEEeecCCCc
Confidence 34443 3455779999876 11000000 00111 111222344 6655321 3333322
Q ss_pred ----CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEE--EecCCcEEEEeCCCCCcccccccCCCCCeeEEE
Q 000861 963 ----NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVS--GSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMC 1036 (1249)
Q Consensus 963 ----dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~s--gs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~ 1036 (1249)
..+++++++....+...+ ...|+|.+++|+|+++-+++ |-.-..+.++|++ +.++..+. .++=+++-
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~ 318 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAF 318 (566)
T ss_pred cccccceEEEEEecCceEEEec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceE
Confidence 246888888743433333 24899999999999976655 5556789999994 66666653 34556777
Q ss_pred EEcCCCCCcccCCCCCEEEEEECC---CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGC---NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~D---g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~ 1113 (1249)
| +|.|+ +++.+|-+ |.+-|||+.+.+++..+...
T Consensus 319 f-np~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--------------------------------- 355 (566)
T KOG2315|consen 319 F-NPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--------------------------------- 355 (566)
T ss_pred E-CCCCC---------EEEEeecCCCCCceEEEeccchhhccccccC---------------------------------
Confidence 8 99998 77777764 78999999987776655521
Q ss_pred ccccccccCCCCCCCCCeEEEeecCCC-eEEEEeC------CCcEEEEeCC
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGT------DLKIRRWDHC 1157 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~------Dg~IriWDl~ 1157 (1249)
.-+-+.|+||| +++|+.. |+.++||++.
T Consensus 356 ----------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 356 ----------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ----------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 34567899999 7777764 7889999985
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.1e-06 Score=101.90 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=157.8
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEE-----eCC-----
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVG-----ACD----- 904 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasg-----s~D----- 904 (1249)
..+++..+++++|++||.+. ++.++|++..++.. ..+.... .+.++.|+|.|.+|.+- ..+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~------~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~ 104 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV------VLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASN 104 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE------EEEeccc--eeeeeeecccccccccccccccccCCCCCC
Confidence 34578889999999888664 57899999988752 2333332 68999999999888652 112
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
-.+.+|++++ +..... +. .+...+ ++.. |+.|. .+++--..+.+++||....+.. ...-
T Consensus 105 pn~~v~~vet-~~~~s~---~q-------~k~Q~~--W~~q-fs~dE----sl~arlv~nev~f~~~~~f~~~---~~kl 163 (566)
T KOG2315|consen 105 PNVLVYNVET-GVQRSQ---IQ-------KKMQNG--WVPQ-FSIDE----SLAARLVSNEVQFYDLGSFKTI---QHKL 163 (566)
T ss_pred Cceeeeeecc-ceehhh---ee-------hhhhcC--cccc-cccch----hhhhhhhcceEEEEecCCccce---eeee
Confidence 3466888882 110000 00 011122 4555 88772 4554455688999999874322 2223
Q ss_pred CCCceEEEEEcCCC--CEEEE-----EecCCcEEEEeCCCCCcc-----cccccCCCCCeeEEEEEcCCCCCcccCCCCC
Q 000861 985 EEGYVSSLVTGPCG--NWFVS-----GSSRGVLTLWDLRFLVPV-----NSWQYSQVCPIEKMCLFVPPPNAAVSTTARP 1052 (1249)
Q Consensus 985 h~~~I~sl~~spdg--~~L~s-----gs~dG~I~lWDlr~~~~l-----~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~ 1052 (1249)
|...|+.+.++|.+ ..+++ ++.-+.|++|.......- ++|. ...-..+.| .+.|. .
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~W-N~~gt--------~ 231 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKW-NKLGT--------A 231 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEe-ccCCc--------e
Confidence 67789999999973 44443 344567999988633221 1221 122335667 66665 2
Q ss_pred EEEEEEC--C---------CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCC--CCCcccccccccccccc
Q 000861 1053 LIYVAAG--C---------NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRS--NPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1053 ~l~t~s~--D---------g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~--~~s~dg~~~~~~~~~~~ 1119 (1249)
+|+.++. | .++++.++....+.-.+. ..+.+.++.|+|....-.+ .+.+ ....+.
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-----k~GPVhdv~W~~s~~EF~VvyGfMP-------Akvtif 299 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-----KEGPVHDVTWSPSGREFAVVYGFMP-------AKVTIF 299 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-----CCCCceEEEECCCCCEEEEEEeccc-------ceEEEE
Confidence 4444443 2 368888887444433332 2456778888773211000 0000 111111
Q ss_pred ccCCC---CCCCCCeEEEeecCCC-eEEEEeCC---CcEEEEeCCCCCccEE
Q 000861 1120 ELNEP---PPRLLGIRSLLPLPGG-DLLTGGTD---LKIRRWDHCSPGRSYC 1164 (1249)
Q Consensus 1120 ~~~~~---~~~~~~V~sl~~spdg-~L~tgs~D---g~IriWDl~~~~~~~~ 1164 (1249)
++... .-..+.-+++.|+|.| +++.+|-+ |.|-+||+.+.+++..
T Consensus 300 nlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 300 NLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred cCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 11110 0011245688899999 66655544 8999999998665433
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=127.03 Aligned_cols=189 Identities=13% Similarity=0.212 Sum_probs=146.9
Q ss_pred CCCCCCccccccCCCCCccC-CCCcEEEEecc-ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEee
Q 000861 803 DLTGLPSFVRTSSIPDSGWR-PRGILVAHLQE-HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH 880 (1249)
Q Consensus 803 s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~-H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~ 880 (1249)
+|..+...+++.|...++|. -.|+.|..++. -...|+.+.|+.+|+.+..+..||.+.+|.+... +...+.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-------~~~s~q 2289 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-------PYTSWQ 2289 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-------ceeccc
Confidence 33344445555577888888 56666666652 2389999999999999999999999999998832 466788
Q ss_pred ccCCceEEEEEecCCCEEEEEe---CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEE
Q 000861 881 LEGSRALCTMMLRHSAQVVVGA---CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMF 957 (1249)
Q Consensus 881 ~h~~~V~sl~fspdg~~Lasgs---~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L 957 (1249)
.|.....++.|.. ..+++++ .++.+.+||.... .....+. ..|.+.+++++ |.|. .+.+
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~----------~~~s~v~--~~H~~gaT~l~-~~P~---~qll 2351 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP----------PMNSLVH--TCHDGGATVLA-YAPK---HQLL 2351 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccC----------cccceee--eecCCCceEEE-EcCc---ceEE
Confidence 8998899999986 5666654 4689999997611 1112343 67999999999 9998 6799
Q ss_pred EEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCC
Q 000861 958 MYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQ 1028 (1249)
Q Consensus 958 ~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~ 1028 (1249)
++|+.+|.|++||++..+..++++. ++ ...++++|+..|.++||++.....++++...|
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 9999999999999999888777742 44 56799999999999999998877887776544
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=6.4e-08 Score=113.70 Aligned_cols=210 Identities=14% Similarity=0.107 Sum_probs=142.3
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC--CEEEEEeCCCeEEEEEc
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS--AQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg--~~Lasgs~Dg~I~vwdv 912 (1249)
.++++++.++|.|+-+|.++.-|. .+-|+...-.. ++.........|-.+.|++.. .+-++......-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~p----pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTP----PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCC----ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 457889999999999999988764 45566554321 122222223367788888743 34444444555568988
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
...+ . ...--.+.+|...++.+. |++..++ .+++++.|..++.||+++.....-.. ..-...-+.+
T Consensus 99 A~ss---~-------~aIef~lhghsraitd~n-~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqV 164 (1081)
T KOG0309|consen 99 AKSS---S-------NAIEFVLHGHSRAITDIN-FNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQV 164 (1081)
T ss_pred hcCC---c-------cceEEEEecCccceeccc-cCCCCCc--ceeeccccccceeeeccCCCcceeee-ecccccCcee
Confidence 7211 1 111234567889999998 9998766 99999999999999999876432221 2234566778
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
.|+-....+.+.+....|.+||+|.|.....+..+|...|..+.| ..-. ...+++++.|++|+.||.+...
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f-nr~~--------~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF-NRFK--------YSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHH-hhhh--------hhhhcccCCCCceeeecccccc
Confidence 898755455556667789999999876544444457778888887 4322 1368899999999999997543
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=2.1e-06 Score=103.56 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=132.2
Q ss_pred CCCcEEEEeccccCceeEEEEcCCCCE--E-EEEECCC--cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 823 PRGILVAHLQEHCSAVNEIAISHDHSF--F-VSASDDS--TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 823 ~~G~lv~~L~~H~~~V~~la~spdg~~--l-aTgs~Dg--tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
.+|.-...|..+...+.+-+|+|||+. + .+...+| .|.+.++.+++. ..+....+......|+|||+.
T Consensus 172 ~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-------~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 172 YDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-------KKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred CCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-------eEeecCCCCccceEECCCCCE
Confidence 556555667766777788899999974 3 2443444 466668877752 122223344557899999998
Q ss_pred EEEEeC-CC----eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE-CCCeEEEE--
Q 000861 898 VVVGAC-DG----IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST-QNCGIHLW-- 969 (1249)
Q Consensus 898 Lasgs~-Dg----~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs-~dg~I~iw-- 969 (1249)
|+..+. +| .+..|++. .+ ..+.. .+......+...... |+|| |+.|++.+ .+|...+|
T Consensus 245 Laf~s~~~g~~di~~~~~~~~-~g-~~g~~--------~~lt~~~~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLE-TG-AIGKP--------RRLLNEAFGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EEEEECCCCCcceeEEEeecc-cC-CCCcc--------eEeecCCCCCcCCeE-ECCC---CCEEEEEECCCCCceEEEE
Confidence 887653 23 23335554 11 00111 111111222334556 9999 66777665 45644444
Q ss_pred EcCC-CccceeeecCCCCCceEEEEEcCCCCEEEEEecC---CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 970 DTRS-NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR---GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 970 Dlrt-~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d---G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
++.. +.....+. .+.+.+....|+|||++|+..+.+ ..|.+||+.+++.... .. ....+....| +|+|+
T Consensus 311 ~~~~~g~~~~~lt--~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~-~~~~~~~p~w-SpDG~-- 383 (428)
T PRK01029 311 QIDPEGQSPRLLT--KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TT-SPENKESPSW-AIDSL-- 383 (428)
T ss_pred ECcccccceEEec--cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cC-CCCCccceEE-CCCCC--
Confidence 5432 22233332 234567788999999998876543 3699999988766443 22 2235677889 99997
Q ss_pred ccCCCCCEEEEEEC---CCeEEEEECCCCceeEEEe
Q 000861 1046 VSTTARPLIYVAAG---CNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~---Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.|+..+. ...|.+||+.+++......
T Consensus 384 -------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 384 -------HLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -------EEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 5654433 3569999998877655443
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.71 E-value=9.9e-07 Score=94.59 Aligned_cols=192 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEec---CCC-EEEEEeCCCeEEEEEccccccCCCccccccCccce
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR---HSA-QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDI 931 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp---dg~-~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i 931 (1249)
.|.+.++++...+... .. ..... ..+.+..+.|.. +|. .++-+..+|.|.++..+ ..... ..+.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~-~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~-~~~ss---~~L~~ls~~ 117 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LD-TLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND-EDESS---VHLRGLSSK 117 (339)
T ss_pred ccceEEEeecccccCc-cc-eeeee-cccccceeeeeeccCCccceeeeccccceEEEEeec-cceee---eeecccchh
Confidence 3567778777665321 00 11111 223466777764 444 55667778999999887 11111 111221111
Q ss_pred eeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC-CEEEEEecCCcE
Q 000861 932 KKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG-NWFVSGSSRGVL 1010 (1249)
Q Consensus 932 ~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg-~~L~sgs~dG~I 1010 (1249)
+.......++. |++. +..++++..+|.+.+-+...+.....-...+|.-++....|+... +.+.+|+.||.+
T Consensus 118 ---ki~~~~~lslD-~~~~---~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 118 ---KISVVEALSLD-ISTS---GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred ---hhhheeeeEEE-eecc---CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 11111344555 7777 668999999999997776655444322335688888888887744 789999999999
Q ss_pred EEEeCC-CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCC
Q 000861 1011 TLWDLR-FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070 (1249)
Q Consensus 1011 ~lWDlr-~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t 1070 (1249)
..||+| .+..+..-..-|...|.++.- +|.. ..+|++|+.|..|++||.++
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~GV~SI~s-s~~~--------~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTSGVVSIYS-SPPK--------PTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred EEEEecCCcceeeecceeeecceEEEec-CCCC--------CceEEEeccccceeeeehhc
Confidence 999999 344443322347778888887 6543 35999999999999999884
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3e-07 Score=107.13 Aligned_cols=196 Identities=16% Similarity=0.247 Sum_probs=141.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEe------c--------------CCCEEEEEeCC
Q 000861 845 HDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML------R--------------HSAQVVVGACD 904 (1249)
Q Consensus 845 pdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fs------p--------------dg~~Lasgs~D 904 (1249)
|.+.+||....||.+||||...++....|.+.....+ ..++..|. | +...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~---t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG---TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccC---cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 4567999999999999999998875444443332222 23333332 1 23467778889
Q ss_pred CeEEEEEccccccCCCccccccCccceeee--cCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKK--DTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l--~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~ 982 (1249)
|.|.+|++. .|++ -..+ ..|.+.|.++. ++.+ -..+.+++.|+.+..|+..........+.
T Consensus 80 g~v~~ys~~-----~g~i--------t~~~st~~h~~~v~~~~-~~~~---~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 80 GSVLLYSVA-----GGEI--------TAKLSTDKHYGNVNEIL-DAQR---LGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccEEEEEec-----CCeE--------EEEEecCCCCCcceeee-cccc---cCceEecCCceeEEEEecccceeeeeecc
Confidence 999999998 2443 1112 35888999987 6666 55899999999999999999988777743
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE-EEECCC
Q 000861 983 IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY-VAAGCN 1061 (1249)
Q Consensus 983 ~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~-t~s~Dg 1061 (1249)
....+.+++++|||..+++++ +.|++||+.+++.+..|. +|.++|+++.| .-.-. +-.+.+++ ++..+.
T Consensus 143 --~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f-~~~~~----g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 143 --QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSF-TTLID----GIIGKYVLSSAAAER 212 (541)
T ss_pred --CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEE-EEecc----ccccceeeecccccc
Confidence 567899999999999998886 589999999999999987 69999999999 44300 01122444 444566
Q ss_pred eEEEEECCC
Q 000861 1062 EVSLWNAEN 1070 (1249)
Q Consensus 1062 ~I~vWDl~t 1070 (1249)
-+.+|-++.
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 688886654
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.71 E-value=2e-06 Score=104.09 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=115.4
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEccccccCCCccccccCccceee
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIKK 933 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~ 933 (1249)
..|.++|..... ...+..+...+.+..|+|+|++|+.++.+ ..|++|++. .+.. ..
T Consensus 170 ~~l~~~d~~g~~-------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~-----~g~~---------~~ 228 (417)
T TIGR02800 170 YELQVADYDGAN-------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA-----TGQR---------EK 228 (417)
T ss_pred ceEEEEcCCCCC-------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC-----CCCE---------EE
Confidence 357777775433 22344455668899999999999887654 479999987 1221 22
Q ss_pred ecCCCCcEEEEEEecCCCCCccEEEE-EECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-C-
Q 000861 934 KDTKEGAIVTLVNYNTDNCASHMFMY-STQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-G- 1008 (1249)
Q Consensus 934 l~~h~~~V~~l~~fs~d~~~g~~L~s-gs~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G- 1008 (1249)
+..+.+.+.+.. |+|+ ++.+++ .+.++ .|++||+.++... .+. .+.+......|+|+|++|+.++.. |
T Consensus 229 ~~~~~~~~~~~~-~spD---g~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 229 VASFPGMNGAPA-FSPD---GSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT--NGPGIDTEPSWSPDGKSIAFTSDRGGS 301 (417)
T ss_pred eecCCCCccceE-ECCC---CCEEEEEECCCCCccEEEEECCCCCEE-ECC--CCCCCCCCEEECCCCCEEEEEECCCCC
Confidence 222344555666 9999 556654 44443 5999999877543 222 234445577899999988876653 3
Q ss_pred -cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC---eEEEEECCCCc
Q 000861 1009 -VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN---EVSLWNAENGS 1072 (1249)
Q Consensus 1009 -~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg---~I~vWDl~tg~ 1072 (1249)
.|.+||+..+.... +.. +...+....| +|++. +++.++.++ .|.+||+.++.
T Consensus 302 ~~iy~~d~~~~~~~~-l~~-~~~~~~~~~~-spdg~---------~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 302 PQIYMMDADGGEVRR-LTF-RGGYNASPSW-SPDGD---------LIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ceEEEEECCCCCEEE-eec-CCCCccCeEE-CCCCC---------EEEEEEccCCceEEEEEeCCCCC
Confidence 58888887665432 221 3345667888 99988 777777665 78899988754
No 265
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=107.90 Aligned_cols=185 Identities=14% Similarity=0.288 Sum_probs=138.9
Q ss_pred CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCC-----ceEEEEEecCCCE
Q 000861 823 PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS-----RALCTMMLRHSAQ 897 (1249)
Q Consensus 823 ~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~-----~V~sl~fspdg~~ 897 (1249)
.+|..+.-|....+.+++|..++-+.+|++|+.||.|..||.++.....+.........|.+ .|+++.|..+|-.
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH 242 (703)
T ss_pred cccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee
Confidence 67999999998889999999999999999999999999999988765433333333333444 4999999999999
Q ss_pred EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 898 Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
+++|+.+|.+.|||+. ..+ . .+..-....-+|..+. |.+.+ +.--++......++|||-.+|+..
T Consensus 243 ~aVGts~G~v~iyDLR-a~~---p--------l~~kdh~~e~pi~~l~-~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLR-ASK---P--------LLVKDHGYELPIKKLD-WQDTD--QQNKVVSMDKRILKIWDECTGKPM 307 (703)
T ss_pred EEeeccCCcEEEEEcc-cCC---c--------eeecccCCccceeeec-ccccC--CCceEEecchHHhhhcccccCCce
Confidence 9999999999999998 221 1 1112222344677777 75552 223444455678999999999987
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccc
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~ 1025 (1249)
..++. ...+..+|+-|++-.++++-.++.+..|=+....+...|.
T Consensus 308 asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWC 352 (703)
T KOG2321|consen 308 ASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWC 352 (703)
T ss_pred eeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhh
Confidence 77753 4459999999999999999998888777766555555543
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=5.9e-06 Score=98.31 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=153.9
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCC------------CCEEEEEECCCcEEEEECC
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHD------------HSFFVSASDDSTVKVWDSR 865 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spd------------g~~laTgs~DgtVkIWD~~ 865 (1249)
+...++.|..-++.. ....+=| .+-++++.+.-|...|+.+.|.|- .-++|++...|.|.+||..
T Consensus 20 A~Dw~~~GLiAygsh--slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSH--SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccceEEEecC--ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 456667775433322 2233444 456788999999999999999873 1267788888999999998
Q ss_pred CCccccccceeeEeeccCCceEEEEEecC---C-CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcE
Q 000861 866 KLEKDISFRSRLTYHLEGSRALCTMMLRH---S-AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 941 (1249)
Q Consensus 866 ~~~~~~~~~~~~t~~~h~~~V~sl~fspd---g-~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V 941 (1249)
.+.. ...+..|..++..++|.+. . ..|++-....++.+|+.+ +|+. +-+++......
T Consensus 98 ~~s~------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-----tG~k--------~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 98 LASV------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-----TGEK--------FWKYDYSHEIL 158 (1062)
T ss_pred hhhh------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-----CCce--------eeccccCCcce
Confidence 8763 4456778889999999873 3 466666777899999988 3432 11122122223
Q ss_pred EEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc------cceeeecCCCCC-------------------------ceE
Q 000861 942 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS------NTWTLKAIPEEG-------------------------YVS 990 (1249)
Q Consensus 942 ~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~------~~~~l~~~~h~~-------------------------~I~ 990 (1249)
.|+. +.|-. .+.+..-+..|.+.+-+.-.-. ....++. .|.. ..-
T Consensus 159 s~f~-~DPfd--~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s-d~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 159 SCFR-VDPFD--SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS-DHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred eeee-eCCCC--cceEEEEccCceEEEEeccCCCCCCCCceeEEEec-CccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 3344 66653 3466666667777666543211 0111111 1111 012
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 991 SLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 991 sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
.++|+|.-+.++..+....+.++|+....++..... ..+.+.-+.+ .|+++ +..+++...||.+.+|--+
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv~v-lP~~~-------rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDV-LPDPR-------RDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCcceeEe-ccCCC-------cceEEEEecCCeEEEEEee
Confidence 356788665566666777899999998888887654 3445566777 78876 5689999999999999654
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.70 E-value=6.2e-06 Score=98.36 Aligned_cols=232 Identities=15% Similarity=0.128 Sum_probs=137.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 846 DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 846 dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
++..++.++.+|.+..+|..+++... ..... +.+.+.-.. .+..++.++.+|.+..||.. .|+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W------~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~-----tG~~--- 167 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELW------RAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAA-----TGER--- 167 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEee------eeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcC-----CCce---
Confidence 45677788899999999999887422 22211 122221111 24567778889999999987 2432
Q ss_pred cCccceeeecCCCCcE-----EEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC--c---eEEEEEc
Q 000861 926 SGISDIKKKDTKEGAI-----VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG--Y---VSSLVTG 995 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~~V-----~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~--~---I~sl~~s 995 (1249)
+-..+...... .+.. .. +..++.++.+|.+..+|.++|+..|........+ . ...+.-+
T Consensus 168 -----~W~~~~~~~~~~~~~~~sp~-~~-----~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~ 236 (377)
T TIGR03300 168 -----LWTYSRVTPALTLRGSASPV-IA-----DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGD 236 (377)
T ss_pred -----eeEEccCCCceeecCCCCCE-EE-----CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCc
Confidence 11111111000 0111 11 1267788889999999999999888754311100 0 0011111
Q ss_pred C--CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCce
Q 000861 996 P--CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSC 1073 (1249)
Q Consensus 996 p--dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~ 1073 (1249)
| .+..+++++.+|.+..||..+++.+..... .. ...... .+. .+++++.+|.+..+|..+|+.
T Consensus 237 p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~-~~~p~~---~~~---------~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 237 PVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SS-YQGPAV---DDN---------RLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred cEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CC-ccCceE---eCC---------EEEEECCCCeEEEEECCCCcE
Confidence 1 245788888999999999999987655431 11 111222 233 688899999999999999975
Q ss_pred eEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEE
Q 000861 1074 HQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRR 1153 (1249)
Q Consensus 1074 ~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~Iri 1153 (1249)
+-........ ...+... .++.+++++.||.|++
T Consensus 302 ~W~~~~~~~~----------------------------------------------~~ssp~i-~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 302 LWKNDELKYR----------------------------------------------QLTAPAV-VGGYLVVGDFEGYLHW 334 (377)
T ss_pred EEccccccCC----------------------------------------------ccccCEE-ECCEEEEEeCCCEEEE
Confidence 4332210000 0011111 2348888999999999
Q ss_pred EeCCCCCccEEEe
Q 000861 1154 WDHCSPGRSYCIC 1166 (1249)
Q Consensus 1154 WDl~~~~~~~~l~ 1166 (1249)
||..+++....+.
T Consensus 335 ~d~~tG~~~~~~~ 347 (377)
T TIGR03300 335 LSREDGSFVARLK 347 (377)
T ss_pred EECCCCCEEEEEE
Confidence 9999888765553
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.68 E-value=6.8e-06 Score=94.21 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=144.2
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCC---------------cEEEE
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDS---------------TVKVW 862 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~Dg---------------tVkIW 862 (1249)
...++|.|..+++.. ...+.+|. +.+-.+.++. | ..|.-+.|+|.+++|+|=+..+ .+.+|
T Consensus 37 ~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw 113 (561)
T COG5354 37 YVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVW 113 (561)
T ss_pred heeecCcchheehhh-ccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEE
Confidence 467889999887754 23467888 5543444443 3 3588999999999999876544 49999
Q ss_pred ECCCCccccccceeeEeeccCCc--eE-EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCC
Q 000861 863 DSRKLEKDISFRSRLTYHLEGSR--AL-CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEG 939 (1249)
Q Consensus 863 D~~~~~~~~~~~~~~t~~~h~~~--V~-sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~ 939 (1249)
|+.++... ..+.+...+ .+ -+.|+-+..++|-- ....++|+++. +.+. ..+.+.+. ..
T Consensus 114 d~~sg~iv------~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t------~n~~----~~p~~~lr--~~ 174 (561)
T COG5354 114 DIASGMIV------FSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT------DNIE----EHPFKNLR--PV 174 (561)
T ss_pred eccCceeE------eeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC------Cccc----cCchhhcc--cc
Confidence 99998743 333333332 33 57788887776644 23458999964 1110 00111111 23
Q ss_pred cEEEEEEecCCCCCccEEEE-----EECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec--------
Q 000861 940 AIVTLVNYNTDNCASHMFMY-----STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-------- 1006 (1249)
Q Consensus 940 ~V~~l~~fs~d~~~g~~L~s-----gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-------- 1006 (1249)
.+.... |+|.+ ++..|++ .+..+.+++|.+..++.+.+... -...=..+.|.+.|.++++-..
T Consensus 175 gi~dFs-isP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 175 GILDFS-ISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ceeeEE-ecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccc
Confidence 344554 66652 1334443 34578899999987665544322 1222346788888887664221
Q ss_pred ---CCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC
Q 000861 1007 ---RGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG 1071 (1249)
Q Consensus 1007 ---dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg 1071 (1249)
...++|++++ +..+..-. ...++|...+| .|.++ +--++.|-.+..+.++|++..
T Consensus 251 yfgesnLyl~~~~-e~~i~V~~-~~~~pVhdf~W-~p~S~-------~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 251 YFGESNLYLLRIT-ERSIPVEK-DLKDPVHDFTW-EPLSS-------RFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eeccceEEEEeec-ccccceec-cccccceeeee-cccCC-------ceeEEecccccceeecccccc
Confidence 2457888886 33333221 35679999999 99987 222333345778999998754
No 269
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.68 E-value=3.1e-07 Score=114.63 Aligned_cols=263 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred cchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCC
Q 000861 191 GIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPP 270 (1249)
Q Consensus 191 ~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~ 270 (1249)
-+.++.+.+..-+.+ ..+..|..|+..+..++ +....+.++|.+..++.|+.|.||..|+.++.++.....
T Consensus 76 ~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p---- 146 (526)
T PF01602_consen 76 LLILIINSLQKDLNS-PNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP---- 146 (526)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH----
Confidence 355667777766666 66678888888777766 556668899999999999999999999999999998743
Q ss_pred CCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccc
Q 000861 271 SDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLN 350 (1249)
Q Consensus 271 ~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1249)
..++..++|.+..+..|+++.|+.+....+..+ ....+
T Consensus 147 ---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~-------------------------------------- 184 (526)
T PF01602_consen 147 ---DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD-------------------------------------- 184 (526)
T ss_dssp ---CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH--------------------------------------
T ss_pred ---HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc--------------------------------------
Confidence 244433789999999999999998877766666 10000
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhh
Q 000861 351 ADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVC 430 (1249)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la 430 (1249)
....+...+.+.+.+++ .+.+|.++..+++-+..++..-........+++.+.++++..++.|+.+.+..|..+.
T Consensus 185 ---~~~~~~~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 185 ---SYKSLIPKLIRILCQLL--SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp ---HHTTHHHHHHHHHHHHH--TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---hhhhhHHHHHHHhhhcc--cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 00011123333344444 2456666666666655554322111111346666666666666666666665555444
Q ss_pred cccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhh
Q 000861 431 FFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 431 ~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~ 510 (1249)
..-. +.+.+.+.+.+.|.++++.|+..++++|..++... ...+...-..+..+..+++..||..+++.+..++.
T Consensus 260 ~~~~---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 260 PSPE---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp SSHH---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cchH---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 3222 34556666666666666666666666666666543 12222222223333336666666666666666665
Q ss_pred cCCcc
Q 000861 511 SLGAV 515 (1249)
Q Consensus 511 ~l~~~ 515 (1249)
.-+..
T Consensus 334 ~~n~~ 338 (526)
T PF01602_consen 334 ESNVK 338 (526)
T ss_dssp HHHHH
T ss_pred ccchh
Confidence 43333
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.67 E-value=6.8e-07 Score=97.59 Aligned_cols=200 Identities=12% Similarity=0.182 Sum_probs=144.5
Q ss_pred cccccCCCCCccCC--CCcEEEEec-cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCce
Q 000861 810 FVRTSSIPDSGWRP--RGILVAHLQ-EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRA 886 (1249)
Q Consensus 810 ~~~s~~~~~~~W~~--~G~lv~~L~-~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V 886 (1249)
++.+.+.++++|.. .|+.-..+. .-..+++++.+.++...|+.|-..|++.-+.+..--... .....+..|..+|
T Consensus 40 ~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm--~~~r~~~~h~~~v 117 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM--TFLKDYLAHQARV 117 (404)
T ss_pred EEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc--chhhhhhhhhcce
Confidence 44444677889973 454433333 235789999999999999999999999988765321110 1234677889999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccccccCCC-------------------------cc----ccccCccceeeecCC
Q 000861 887 LCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLG-------------------------NV----EKYSGISDIKKKDTK 937 (1249)
Q Consensus 887 ~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g-------------------------~~----~~~~~~~~i~~l~~h 937 (1249)
..+.|+.....+++++.|..+.---.+ .+...| ++ ....+...+.++.+|
T Consensus 118 ~~~if~~~~e~V~s~~~dk~~~~hc~e-~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 118 SAIVFSLTHEWVLSTGKDKQFAWHCTE-SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeEEecCCceeEEEeccccceEEEeec-cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 999999888888888888765422222 221111 11 011223467788899
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF 1017 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~ 1017 (1249)
.+.++++. |.+. ...+++|..|..|.+||+..++-+ ..+..+|...|..++.-+--+.+.+++.||.|.+||++.
T Consensus 197 ~~~~~~l~-Wd~~---~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 197 TGEVTCLK-WDPG---QRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccceEEEE-EcCC---CcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999998 9988 679999999999999999765543 445567899999998888888999999999999999863
No 271
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.5e-06 Score=107.02 Aligned_cols=314 Identities=18% Similarity=0.158 Sum_probs=213.3
Q ss_pred cccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccccc
Q 000861 189 CEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268 (1249)
Q Consensus 189 ~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~ 268 (1249)
.|...-|.+.++-++-.=..+..|.+-|+.+.++++..-|| +.-.++|++.+.++++.+.-|-.|++-|..+...+...
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 34444566666666655588999999999999999999999 99999999999999999999999999999888877532
Q ss_pred CCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcccccccCCCCCCCCCCCc
Q 000861 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAY-------GFLVHSIRLSEAGVLDKLSAPHKSPSSSNE 341 (1249)
Q Consensus 269 ~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~-------rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1249)
+.. +.+-|++.|..-.+|++..||.+-+..+...++... +|-.+--.+-. .++..... .+..
T Consensus 153 ---~~~-~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~--vl~~~i~~-----~d~~ 221 (1075)
T KOG2171|consen 153 ---LQP-HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLN--VLQEVIQD-----GDDD 221 (1075)
T ss_pred ---cch-hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHH--HhHhhhhc-----cchH
Confidence 222 334588999999999988899999999988887652 33322111000 00000000 0000
Q ss_pred chh-hhhccch-----hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh---cCcc--ccchhhhhhHhhh
Q 000861 342 TSV-QLQRLNA-----DVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF---FGQR--QSNDFLLPILPAF 410 (1249)
Q Consensus 342 ~~~-~~~~~~~-----~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f---~G~~--~~~d~lLp~l~t~ 410 (1249)
.-. -...++. ..-+......|+...+.+...++=+..+|..+|+=|..+..+ .-+- ...+.|+|.+...
T Consensus 222 ~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 222 AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 000 0001100 112222333444444455555566899999999877666655 1111 1223344544444
Q ss_pred hcC----CCHH------------HHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--C
Q 000861 411 LND----RDEQ------------LRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS--G 472 (1249)
Q Consensus 411 lnD----~~w~------------lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--g 472 (1249)
+.| .+|. =-..=.+.|=-+|.-+|+..+---+.|.+.++|.-++..=|.++|..|..+.|- .
T Consensus 302 mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred cCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH
Confidence 332 1110 111225677788999998888888999999999999999999999999999885 2
Q ss_pred CCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCcc
Q 000861 473 YLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAV 515 (1249)
Q Consensus 473 l~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~ 515 (1249)
.+. ..+-++++-|++++.+|..+||.||+..|..++..|.+.
T Consensus 382 ~m~-~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 382 VMI-GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 332 255678999999999999999999999999999887643
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=4.6e-06 Score=96.03 Aligned_cols=234 Identities=15% Similarity=0.112 Sum_probs=137.0
Q ss_pred CCCCCCCCCCccccccCCCCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEEC-----------CCcEEEEECCC
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASD-----------DSTVKVWDSRK 866 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~~~~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~-----------DgtVkIWD~~~ 866 (1249)
.+.+||-|..+++=- -.-+.+|- +.-..++.|. |.+ |.-+.|||..+||+|-|. ...++|||+.+
T Consensus 215 yv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEe-ccceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 355666666654422 11244565 3323333332 544 888999999999999652 25799999999
Q ss_pred CccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEE
Q 000861 867 LEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVN 946 (1249)
Q Consensus 867 ~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~ 946 (1249)
|....+|... ......-.-..|+.|++++|--.. .+|.||+.... . .+..-...-..|....
T Consensus 292 G~lkrsF~~~---~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~---------lld~Kslki~gIr~Fs- 353 (698)
T KOG2314|consen 292 GLLKRSFPVI---KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----M---------LLDKKSLKISGIRDFS- 353 (698)
T ss_pred cchhcceecc---CCCccccceEEeccCCceeEEecc-ceEEEEecCce----e---------eecccccCCccccCcc-
Confidence 9865444321 122222234689999999987666 45899987611 0 0000011123344555
Q ss_pred ecCCCCCccEEEEEEC-----CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-------C---CcEE
Q 000861 947 YNTDNCASHMFMYSTQ-----NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-------R---GVLT 1011 (1249)
Q Consensus 947 fs~d~~~g~~L~sgs~-----dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-------d---G~I~ 1011 (1249)
|+|. +.+|++-+- -..+.+..+.+++.+.+... +.-.=..+.|-.+|.+|+.-.. . ..+.
T Consensus 354 wsP~---~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 354 WSPT---SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred cCCC---cceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 7887 567766443 24577777777776655432 3333345667778888875322 1 1356
Q ss_pred EEeCCCCC-cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECC---CeEEEEECCC
Q 000861 1012 LWDLRFLV-PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGC---NEVSLWNAEN 1070 (1249)
Q Consensus 1012 lWDlr~~~-~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~D---g~I~vWDl~t 1070 (1249)
|+.++... ++... .....|...+| .|.|+ .+++.++. .++.+|.+++
T Consensus 429 IfrireKdIpve~v--elke~vi~FaW-EP~gd---------kF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 429 IFRIREKDIPVEVV--ELKESVIAFAW-EPHGD---------KFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEEeeccCCCceee--ecchheeeeee-ccCCC---------eEEEEEccccccceeEEEeec
Confidence 66665432 33333 34567889999 99987 45544442 4677887763
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=4.8e-05 Score=84.71 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=125.8
Q ss_pred CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC---CCeEEEEEccccccCCCccccccCcccee
Q 000861 856 DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC---DGIIHMFSVDHISRGLGNVEKYSGISDIK 932 (1249)
Q Consensus 856 DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~---Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~ 932 (1249)
++-|.+|++.+.....+ ....-.+.+..+-++|+|+.+.|.++-. +|.|-.|.++.. .|.+ ..+.
T Consensus 15 s~gI~v~~ld~~~g~l~---~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~---~G~L------t~ln 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELS---LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD---DGRL------TFLN 82 (346)
T ss_pred CCceEEEEEeCcccccc---hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC---CCeE------EEee
Confidence 56799999885432111 1123345567899999999998888754 578888988821 1332 1111
Q ss_pred eecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCC-CccceeeecCCCCCc----------eEEEEEcCCCCE
Q 000861 933 KKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRS-NSNTWTLKAIPEEGY----------VSSLVTGPCGNW 1000 (1249)
Q Consensus 933 ~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt-~~~~~~l~~~~h~~~----------I~sl~~spdg~~ 1000 (1249)
.......+.+.++ ++++ +++++++.. .|.|.++-++. |..........|.+. +.+..++|++++
T Consensus 83 ~~~~~g~~p~yvs-vd~~---g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 83 RQTLPGSPPCYVS-VDED---GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred ccccCCCCCeEEE-ECCC---CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 1111222335565 8888 677777765 58899999976 433322232234444 788899999999
Q ss_pred EEEEecC-CcEEEEeCCCCCcccc--cccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCC
Q 000861 1001 FVSGSSR-GVLTLWDLRFLVPVNS--WQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENG 1071 (1249)
Q Consensus 1001 L~sgs~d-G~I~lWDlr~~~~l~s--~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg 1071 (1249)
|++.... -.|.+|++..|..... .....+..-+.|.| +|+++ +.++.++ +++|.+|.+...
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F-Hpn~k---------~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF-HPNGK---------YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE-cCCCc---------EEEEEeccCCEEEEEEEcCC
Confidence 9887642 4699999987764332 11234556789999 99998 7888777 899999999874
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.62 E-value=4.1e-05 Score=88.44 Aligned_cols=265 Identities=13% Similarity=0.126 Sum_probs=150.0
Q ss_pred ccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEE----------CCCcEEEEECCCCccccccceeeE-eeccCCceE
Q 000861 820 GWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSAS----------DDSTVKVWDSRKLEKDISFRSRLT-YHLEGSRAL 887 (1249)
Q Consensus 820 ~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs----------~DgtVkIWD~~~~~~~~~~~~~~t-~~~h~~~V~ 887 (1249)
+-+ .+++.+.++..-..+-- + ++|||+.+..+. .+..|.+||..+++........-. .......-.
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~ 108 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW 108 (352)
T ss_pred EEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc
Confidence 444 35667777774443332 4 999998776654 478999999999874321110000 000122344
Q ss_pred EEEEecCCCEEEEEe-C-CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCe
Q 000861 888 CTMMLRHSAQVVVGA-C-DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCG 965 (1249)
Q Consensus 888 sl~fspdg~~Lasgs-~-Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~ 965 (1249)
.++++|||+++++.. . +..|.+.|+. .+++ +..+.... +..+...+.+ ...+.+.||.
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~-----~~kv--------v~ei~vp~--~~~vy~t~e~-----~~~~~~~Dg~ 168 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLE-----GKAF--------VRMMDVPD--CYHIFPTAND-----TFFMHCRDGS 168 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECC-----CCcE--------EEEEeCCC--CcEEEEecCC-----ccEEEeecCc
Confidence 789999999988765 3 7899999998 2332 33333211 1111101111 1112222333
Q ss_pred EEEEEcCC-Ccc-ceeeec-CCCCCceE-EEEEcC-CCCEEEEEecCCcEEEEeCCC-----CCcccccccC------CC
Q 000861 966 IHLWDTRS-NSN-TWTLKA-IPEEGYVS-SLVTGP-CGNWFVSGSSRGVLTLWDLRF-----LVPVNSWQYS------QV 1029 (1249)
Q Consensus 966 I~iwDlrt-~~~-~~~l~~-~~h~~~I~-sl~~sp-dg~~L~sgs~dG~I~lWDlr~-----~~~l~s~~~~------~~ 1029 (1249)
....-+.+ ++. ....+. .....++. .-.+.+ +|.++.+... |.|.+.|+.. ......+..+ ..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 33322221 110 111110 00000000 003345 7888877776 9999999543 3333222211 12
Q ss_pred CCeeEEEEEcCCCCCcccCCCCCEEEEEE----------CCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCC
Q 000861 1030 CPIEKMCLFVPPPNAAVSTTARPLIYVAA----------GCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPS 1099 (1249)
Q Consensus 1030 ~~I~~l~~~sp~g~~~~~~~~~~~l~t~s----------~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~ 1099 (1249)
+.+.-+++ +|+++ .++++. ..++|.++|..+++.+..+....
T Consensus 248 ~g~q~ia~-~~dg~---------~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~------------------ 299 (352)
T TIGR02658 248 GGWQQVAY-HRARD---------RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH------------------ 299 (352)
T ss_pred CcceeEEE-cCCCC---------EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC------------------
Confidence 23444888 99887 677742 22589999999999888776311
Q ss_pred CCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEE-EEeCCCcEEEEeCCCCCccEEE
Q 000861 1100 SRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLL-TGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1100 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~-tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
.+..++++||| .|+ +...++.|.+.|..+++.+..+
T Consensus 300 ------------------------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 ------------------------------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ------------------------------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 67889999999 444 4446889999999999888776
No 275
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=3.9e-05 Score=90.28 Aligned_cols=255 Identities=14% Similarity=0.169 Sum_probs=156.0
Q ss_pred CceeEEEEcCCCCEEEEEEC----CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-CCeEEEE
Q 000861 836 SAVNEIAISHDHSFFVSASD----DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-DGIIHMF 910 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~----DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-Dg~I~vw 910 (1249)
.....++++|++++|.++.. +|.|..|++..... .+...............++++|++++|+++.. +|+|.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG--TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 45667889999998888766 57899998776421 11122233324445678999999999998875 8999999
Q ss_pred EccccccCCCcccc------ccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCCCc--cc--ee
Q 000861 911 SVDHISRGLGNVEK------YSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRSNS--NT--WT 979 (1249)
Q Consensus 911 dv~~~~~~~g~~~~------~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt~~--~~--~~ 979 (1249)
+++.. |.+.. +.+... .........+.++. |+|+ ++++++... ...|.+|++.... .. ..
T Consensus 115 ~l~~~----g~l~~~~~~~~~~g~g~-~~~rq~~~h~H~v~-~~pd---g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 115 PLDDD----GSLGEVVQTVRHEGSGP-NPDRQEGPHPHQVV-FSPD---GRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp EECTT----SEEEEEEEEEESEEEES-STTTTSSTCEEEEE-E-TT---SSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred EccCC----cccceeeeecccCCCCC-cccccccccceeEE-ECCC---CCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 99821 32200 000000 00011234567777 9999 667766543 4689999997765 21 22
Q ss_pred eecCCCCCceEEEEEcCCCCEEEEEe-cCCcEEEEeCC--CCCc--ccccc---cC--CCCCeeEEEEEcCCCCCcccCC
Q 000861 980 LKAIPEEGYVSSLVTGPCGNWFVSGS-SRGVLTLWDLR--FLVP--VNSWQ---YS--QVCPIEKMCLFVPPPNAAVSTT 1049 (1249)
Q Consensus 980 l~~~~h~~~I~sl~~spdg~~L~sgs-~dG~I~lWDlr--~~~~--l~s~~---~~--~~~~I~~l~~~sp~g~~~~~~~ 1049 (1249)
+.. +.....+.++|+|+++++++.. .++.|.++++. .+.. +..+. .+ .......+.+ +|+|+
T Consensus 186 ~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~------ 257 (345)
T PF10282_consen 186 IKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-SPDGR------ 257 (345)
T ss_dssp EEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSS------
T ss_pred ccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-ecCCC------
Confidence 332 3456789999999998887665 46789999987 3321 11111 11 1125678889 99998
Q ss_pred CCCEEEEEEC-CCeEEEEECC--CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCC
Q 000861 1050 ARPLIYVAAG-CNEVSLWNAE--NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPP 1126 (1249)
Q Consensus 1050 ~~~~l~t~s~-Dg~I~vWDl~--tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~ 1126 (1249)
+|+++.. ++.|.+|++. +|.... +.......
T Consensus 258 ---~lyvsnr~~~sI~vf~~d~~~g~l~~-~~~~~~~G------------------------------------------ 291 (345)
T PF10282_consen 258 ---FLYVSNRGSNSISVFDLDPATGTLTL-VQTVPTGG------------------------------------------ 291 (345)
T ss_dssp ---EEEEEECTTTEEEEEEECTTTTTEEE-EEEEEESS------------------------------------------
T ss_pred ---EEEEEeccCCEEEEEEEecCCCceEE-EEEEeCCC------------------------------------------
Confidence 8888764 6789999993 344322 22111000
Q ss_pred CCCCeEEEeecCCC-eEEEE-eCCCcEEEEeCC
Q 000861 1127 RLLGIRSLLPLPGG-DLLTG-GTDLKIRRWDHC 1157 (1249)
Q Consensus 1127 ~~~~V~sl~~spdg-~L~tg-s~Dg~IriWDl~ 1157 (1249)
..-+.++++|+| +|+++ ..++.|.+|++.
T Consensus 292 --~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 292 --KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 146889999999 55555 467899999774
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.9e-06 Score=101.10 Aligned_cols=169 Identities=11% Similarity=0.101 Sum_probs=127.4
Q ss_pred CceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccc---cccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE
Q 000861 884 SRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVE---KYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 884 ~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~---~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg 960 (1249)
....|+.|.....++++|+.||.+++..+++ ....++.. ..+....-.++++|.+.|..+. |+.. .+.|-++
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t-~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT-WNe~---~QKLTtS 89 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGT-DTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT-WNEN---NQKLTTS 89 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccc-cCCcccccccccccccchhhhhccCcceEEEEE-eccc---ccccccc
Confidence 4588999999999999999999999999983 32222221 1122233467889999999988 9887 5689999
Q ss_pred ECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcC
Q 000861 961 TQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVP 1040 (1249)
Q Consensus 961 s~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp 1040 (1249)
..+|-|.+|-+-.+.-...+.+....+.|.+++|..+|..++....||.|.+=.+.-++.-.. .. ...-...+.| ++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eL-kg~~l~hv~w-s~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-EL-KGQLLAHVLW-SE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hc-chheccceee-cc
Confidence 999999999999887766666666788999999999999999999999998877743322111 00 1112346788 88
Q ss_pred CCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1041 PPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1041 ~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
|.. .++.+-.+|++.+||.+
T Consensus 167 D~~---------~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 167 DLE---------QALFKKANGETHLYDNQ 186 (1189)
T ss_pred cHH---------HHHhhhcCCcEEEeccc
Confidence 887 67777778999999976
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=3.4e-06 Score=101.83 Aligned_cols=220 Identities=9% Similarity=-0.082 Sum_probs=127.2
Q ss_pred CCCCCCCCCcc---ccccCCCCCccC--CCCcEEEEeccccCceeEEEEcCCCCEEEEEEC-CC----cEEEEECCCCcc
Q 000861 800 SPADLTGLPSF---VRTSSIPDSGWR--PRGILVAHLQEHCSAVNEIAISHDHSFFVSASD-DS----TVKVWDSRKLEK 869 (1249)
Q Consensus 800 ~~~s~~G~~~~---~~s~~~~~~~W~--~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~-Dg----tVkIWD~~~~~~ 869 (1249)
-.++|||..+. ....+....+|- ..|.-...+....+.....+|||||+.|+..+. +| .+.+|++..+..
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 35789987421 221133456775 333223333334444557899999998876553 23 344477665321
Q ss_pred ccccceeeEeeccCCceEEEEEecCCCEEEEEe-CCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEec
Q 000861 870 DISFRSRLTYHLEGSRALCTMMLRHSAQVVVGA-CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYN 948 (1249)
Q Consensus 870 ~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs-~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs 948 (1249)
. +.......+.+.....+|+|||+.|+..+ .+|...+|.+..... .+ ..+.+..+.+.+.... |+
T Consensus 270 g---~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-g~---------~~~~lt~~~~~~~~p~-wS 335 (428)
T PRK01029 270 G---KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-GQ---------SPRLLTKKYRNSSCPA-WS 335 (428)
T ss_pred C---cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-cc---------ceEEeccCCCCcccee-EC
Confidence 0 01112222223346789999999888765 467666776541100 01 1223333344556666 99
Q ss_pred CCCCCccEEEEEECC---CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec---CCcEEEEeCCCCCccc
Q 000861 949 TDNCASHMFMYSTQN---CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS---RGVLTLWDLRFLVPVN 1022 (1249)
Q Consensus 949 ~d~~~g~~L~sgs~d---g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~---dG~I~lWDlr~~~~l~ 1022 (1249)
|+ |+.|++.+.+ ..|.+||+.+++.. .+.. ....+.+..|+|||++|+..+. .+.|.+||+..+....
T Consensus 336 PD---G~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 336 PD---GKKIAFCSVIKGVRQICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred CC---CCEEEEEEcCCCCcEEEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 99 6777776543 47999999888754 2321 2345678899999998876543 3468888987766543
Q ss_pred ccccCCCCCeeEEEEEcCCC
Q 000861 1023 SWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 1023 s~~~~~~~~I~~l~~~sp~g 1042 (1249)
... ..+.+...+| +|..
T Consensus 410 Lt~--~~g~~~~p~W-s~~~ 426 (428)
T PRK01029 410 IVI--GSGEKRFPSW-GAFP 426 (428)
T ss_pred eec--CCCcccCcee-cCCC
Confidence 322 2334556677 6643
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.57 E-value=6.2e-07 Score=100.18 Aligned_cols=165 Identities=8% Similarity=0.120 Sum_probs=114.4
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE---EC
Q 000861 886 ALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS---TQ 962 (1249)
Q Consensus 886 V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg---s~ 962 (1249)
...+..++.++++|++..+....++++....+ +.+.+...... ...+++. |..+ ......+ +.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---------~~kl~~~~~v~-~~~~ai~-~~~~---~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---------GAKLLDVSCVP-KRPTAIS-FIRE---DTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC---------cceeeeEeecc-cCcceee-eeec---cceEEEEeecCC
Confidence 44456677788888888888777888772111 11111111111 1222333 3333 1233333 33
Q ss_pred CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCC
Q 000861 963 NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 963 dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g 1042 (1249)
...+.+|....+.... .-+|-+.++.++|+||+++++++..|+.|++-....--.+.+|..||..-|..++. .++.
T Consensus 131 ~~~~di~s~~~~~~~~---~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl-~~~~ 206 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEP---ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL-TDNY 206 (390)
T ss_pred ceeeeeecccccCcch---hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee-ccCc
Confidence 4455555555444332 24689999999999999999999999999999888888899999999999999998 5554
Q ss_pred CCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1043 NAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1043 ~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.|+++++|+++++||+.+|+++.++.
T Consensus 207 ----------~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 207 ----------LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ----------eeeecCCCCcEEEEecccCCcccccc
Confidence 58999999999999999999887665
No 279
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1.1e-05 Score=98.02 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=107.2
Q ss_pred cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-CC--eEEEEEccccccCCCccccccCccceeee
Q 000861 858 TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-DG--IIHMFSVDHISRGLGNVEKYSGISDIKKK 934 (1249)
Q Consensus 858 tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l 934 (1249)
.+.++|...... ..+..+...+.+..|+|||+.|+..+. ++ .|++||+. .++. ..+..+
T Consensus 199 ~l~i~d~dG~~~-------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~-----tg~~------~~lt~~ 260 (448)
T PRK04792 199 QLMIADYDGYNE-------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY-----TQVR------EKVTSF 260 (448)
T ss_pred EEEEEeCCCCCc-------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC-----CCCe------EEecCC
Confidence 566677665431 233445567889999999999887654 33 57777776 1221 011111
Q ss_pred cCCCCcEEEEEEecCCCCCccEEEE-EECCCe--EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CC--
Q 000861 935 DTKEGAIVTLVNYNTDNCASHMFMY-STQNCG--IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RG-- 1008 (1249)
Q Consensus 935 ~~h~~~V~~l~~fs~d~~~g~~L~s-gs~dg~--I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG-- 1008 (1249)
.+...... |+|+ |+.+++ .+.+|. |++||+.+++.. .+. .+.......+|+|||++++..+. +|
T Consensus 261 ---~g~~~~~~-wSPD---G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt--~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 261 ---PGINGAPR-FSPD---GKKLALVLSKDGQPEIYVVDIATKALT-RIT--RHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred ---CCCcCCee-ECCC---CCEEEEEEeCCCCeEEEEEECCCCCeE-ECc--cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 22233455 9999 566654 555664 888899877643 332 23456678899999998877654 34
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CC--eEEEEECCCCce
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CN--EVSLWNAENGSC 1073 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg--~I~vWDl~tg~~ 1073 (1249)
.|.++|+.++..... .. .........| +|+|+ +++..+. ++ .|.++|+.+++.
T Consensus 331 ~Iy~~dl~~g~~~~L-t~-~g~~~~~~~~-SpDG~---------~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 331 QIYRVNLASGKVSRL-TF-EGEQNLGGSI-TPDGR---------SMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred eEEEEECCCCCEEEE-ec-CCCCCcCeeE-CCCCC---------EEEEEEecCCceEEEEEECCCCCe
Confidence 466778876654332 21 1122345688 99998 6666554 33 466678777653
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=3.9e-05 Score=101.90 Aligned_cols=269 Identities=10% Similarity=0.024 Sum_probs=156.1
Q ss_pred eEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeE--e------eccCCceEEEEEecCCCEEEEEe-CCCeEE
Q 000861 839 NEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT--Y------HLEGSRALCTMMLRHSAQVVVGA-CDGIIH 908 (1249)
Q Consensus 839 ~~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t--~------~~h~~~V~sl~fspdg~~Lasgs-~Dg~I~ 908 (1249)
..+++++ ++.++++-+..+.|.+||..... ...+..... + ..+-.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4567876 46688888888999999976432 110000000 0 00112357899999888766654 457788
Q ss_pred EEEccccccCCCccccccCcc-ceeeecC-------CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceee
Q 000861 909 MFSVDHISRGLGNVEKYSGIS-DIKKKDT-------KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTL 980 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~-~i~~l~~-------h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l 980 (1249)
++|.. .+.+..+.+.. ....+.+ .-.....++ |++++ +.++++.+.++.|++||..++... .+
T Consensus 650 ~id~~-----~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa-~dp~~--g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 650 EIDFV-----NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVC-FEPVN--EKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred EEecC-----CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEE-EecCC--CeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 88876 12211111000 0000000 012345676 88853 557777778899999999876532 12
Q ss_pred ecC-------C------CCCceEEEEEcCCCCEEE-EEecCCcEEEEeCCCCCccccc-----------ccC-C------
Q 000861 981 KAI-------P------EEGYVSSLVTGPCGNWFV-SGSSRGVLTLWDLRFLVPVNSW-----------QYS-Q------ 1028 (1249)
Q Consensus 981 ~~~-------~------h~~~I~sl~~spdg~~L~-sgs~dG~I~lWDlr~~~~l~s~-----------~~~-~------ 1028 (1249)
... + .......++++|++.+|+ +-+.++.|++||+.++...... ..+ .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 110 0 123466799999998555 4556789999999865421100 000 0
Q ss_pred --CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCc
Q 000861 1029 --VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKT 1106 (1249)
Q Consensus 1029 --~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~ 1106 (1249)
-.....+++ +++|. .+++-+.++.|++||..++........ .... ..
T Consensus 801 ~~l~~P~Gvav-d~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~-G~~G--------------------~~ 849 (1057)
T PLN02919 801 VLLQHPLGVLC-AKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGT-GKAG--------------------FK 849 (1057)
T ss_pred hhccCCceeeE-eCCCc---------EEEEECCCCEEEEEECCCCeEEEEecc-CCcC--------------------CC
Confidence 012346677 77776 666667788999999988765543321 0000 00
Q ss_pred cccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCc
Q 000861 1107 DLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGR 1161 (1249)
Q Consensus 1107 dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~ 1161 (1249)
||.. ..........++++++| .+++.+.+++|++||+.+++.
T Consensus 850 dG~~-------------~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 850 DGKA-------------LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcc-------------cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1110 01122356788999999 778888999999999988765
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=1.1e-05 Score=107.01 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=144.5
Q ss_pred CCCCccCCCCcEEEEecc-c-------------cCceeEEEEcCCCCEE-EEEECCCcEEEEECCCCcccccccee----
Q 000861 816 IPDSGWRPRGILVAHLQE-H-------------CSAVNEIAISHDHSFF-VSASDDSTVKVWDSRKLEKDISFRSR---- 876 (1249)
Q Consensus 816 ~~~~~W~~~G~lv~~L~~-H-------------~~~V~~la~spdg~~l-aTgs~DgtVkIWD~~~~~~~~~~~~~---- 876 (1249)
.....|+.+|..+..+.+ . -.....+++++++..| ++-...+.|+++|..++.. .++...
T Consensus 590 ~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g 668 (1057)
T PLN02919 590 NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKG 668 (1057)
T ss_pred CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCccc
Confidence 445567777776655543 1 1235789999987754 4445567899999876541 000000
Q ss_pred eEeecc-------CCceEEEEEec-CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecC------CCCcEE
Q 000861 877 LTYHLE-------GSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT------KEGAIV 942 (1249)
Q Consensus 877 ~t~~~h-------~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~------h~~~V~ 942 (1249)
..+.+. -..-..++|+| ++..+++.+.++.|++|+... +.+..+.+........+ .-....
T Consensus 669 ~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-----g~v~~~~G~G~~~~~~g~~~~~~~~~~P~ 743 (1057)
T PLN02919 669 SDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD-----GVTRVFSGDGYERNLNGSSGTSTSFAQPS 743 (1057)
T ss_pred CCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC-----CeEEEEecCCccccCCCCccccccccCcc
Confidence 000000 01246799999 566667777889999999861 22211111100000111 112355
Q ss_pred EEEEecCCCCCcc-EEEEEECCCeEEEEEcCCCccceeee-----------cC--------CCCCceEEEEEcCCCCEEE
Q 000861 943 TLVNYNTDNCASH-MFMYSTQNCGIHLWDTRSNSNTWTLK-----------AI--------PEEGYVSSLVTGPCGNWFV 1002 (1249)
Q Consensus 943 ~l~~fs~d~~~g~-~L~sgs~dg~I~iwDlrt~~~~~~l~-----------~~--------~h~~~I~sl~~spdg~~L~ 1002 (1249)
.++ ++|+ +. ++++-+.++.|++||+.++....... .. .......+++++++|+.++
T Consensus 744 GIa-vspd---G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 744 GIS-LSPD---LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred EEE-EeCC---CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 677 8998 45 55556667999999998765321110 00 0112356899999999888
Q ss_pred EEecCCcEEEEeCCCCCcccccccC------------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCC
Q 000861 1003 SGSSRGVLTLWDLRFLVPVNSWQYS------------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1070 (1249)
Q Consensus 1003 sgs~dG~I~lWDlr~~~~l~s~~~~------------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~t 1070 (1249)
+-+.++.|++||..++........+ .-.....+++ +++|+ ++++-+.++.|++||+.+
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav-d~dG~---------lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL-GENGR---------LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE-eCCCC---------EEEEECCCCEEEEEECCC
Confidence 8889999999999876554322111 1124567888 88887 666667789999999998
Q ss_pred Cce
Q 000861 1071 GSC 1073 (1249)
Q Consensus 1071 g~~ 1073 (1249)
+..
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 865
No 282
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=1.9e-05 Score=95.94 Aligned_cols=176 Identities=12% Similarity=0.049 Sum_probs=111.2
Q ss_pred cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEccccccCCCccccccCccceeee
Q 000861 858 TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIKKK 934 (1249)
Q Consensus 858 tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l 934 (1249)
.|.++|..... ...+..+...+....|+|||+.|+..+.+ ..|.+|++. .++. +.+
T Consensus 180 ~l~~~d~~g~~-------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-----~g~~---------~~l 238 (430)
T PRK00178 180 TLQRSDYDGAR-------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-----TGRR---------EQI 238 (430)
T ss_pred EEEEECCCCCC-------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-----CCCE---------EEc
Confidence 46677776543 22344556678999999999999876643 368888887 1221 112
Q ss_pred cCCCCcEEEEEEecCCCCCccEEEE-EECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec-CC--
Q 000861 935 DTKEGAIVTLVNYNTDNCASHMFMY-STQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS-RG-- 1008 (1249)
Q Consensus 935 ~~h~~~V~~l~~fs~d~~~g~~L~s-gs~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~-dG-- 1008 (1249)
....+...... |+|+ |+.++. ...+| .|++||+.+++.. .+ ..+.+......|+|||+.++..+. +|
T Consensus 239 ~~~~g~~~~~~-~SpD---G~~la~~~~~~g~~~Iy~~d~~~~~~~-~l--t~~~~~~~~~~~spDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 239 TNFEGLNGAPA-WSPD---GSKLAFVLSKDGNPEIYVMDLASRQLS-RV--TNHPAIDTEPFWGKDGRTLYFTSDRGGKP 311 (430)
T ss_pred cCCCCCcCCeE-ECCC---CCEEEEEEccCCCceEEEEECCCCCeE-Ec--ccCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 22223344566 9999 666664 44444 6889999887643 23 224455667899999998877664 33
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CC--eEEEEECCCCce
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CN--EVSLWNAENGSC 1073 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg--~I~vWDl~tg~~ 1073 (1249)
.|.+||+.++..... .. .........| +|+|+ +++..+. ++ .|.+||+.+++.
T Consensus 312 ~iy~~d~~~g~~~~l-t~-~~~~~~~~~~-Spdg~---------~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 312 QIYKVNVNGGRAERV-TF-VGNYNARPRL-SADGK---------TLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred eEEEEECCCCCEEEe-ec-CCCCccceEE-CCCCC---------EEEEEEccCCceEEEEEECCCCCE
Confidence 577778877664332 21 1122345678 99988 6666654 33 588899887764
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.51 E-value=3.7e-05 Score=91.76 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcccccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS 926 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~ 926 (1249)
+..++.++.+|.|..+|..+++... .+........... .++..+++++.+|.+..||.. +|++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W------~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~-----tG~~---- 127 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLW------RVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAE-----DGKE---- 127 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEee------eecCCCCcccceE--EcCCEEEEEcCCCEEEEEECC-----CCcE----
Confidence 5578888889999999999887432 2222211111122 246678888899999999987 3443
Q ss_pred CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCc---eEEEEEcCCCCEEEE
Q 000861 927 GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGY---VSSLVTGPCGNWFVS 1003 (1249)
Q Consensus 927 ~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~---I~sl~~spdg~~L~s 1003 (1249)
+..... .+.+.+..... +..++.++.+|.|..||.++|+.+|..+....... ..+..+. +..++.
T Consensus 128 ----~W~~~~-~~~~~~~p~v~-----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~ 195 (377)
T TIGR03300 128 ----LWRAKL-SSEVLSPPLVA-----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLV 195 (377)
T ss_pred ----eeeecc-CceeecCCEEE-----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEE
Confidence 111111 12222211121 23777788899999999999999998864221100 0111222 247788
Q ss_pred EecCCcEEEEeCCCCCcccccccCCC---CCeeEEE-E-EcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 1004 GSSRGVLTLWDLRFLVPVNSWQYSQV---CPIEKMC-L-FVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1004 gs~dG~I~lWDlr~~~~l~s~~~~~~---~~I~~l~-~-~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
++.+|.+..+|.++|+.+........ ..+..+. + ..|-- .+..+++++.+|.+..||..+|+..-
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-------~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-------DGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-------ECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 88999999999999987654322111 0111110 0 01100 12368888999999999999987543
No 284
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.8e-07 Score=109.05 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=214.8
Q ss_pred hhhHHHhHhh---hhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhH
Q 000861 136 ELLQSISDAF---RKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYR 212 (1249)
Q Consensus 136 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r 212 (1249)
-.+.+++..+ ..|-..-||--++++..+++..++.+. .-.+++.++.++.. ..|++|
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-------------------VK~llpsll~~l~~-~kWrtK 271 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-------------------VKLLLPSLLGSLLE-AKWRTK 271 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-------------------hhHhhhhhHHHHHH-HhhhhH
Confidence 3444555544 456677899999999999999883222 34455556666666 399999
Q ss_pred HHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCC
Q 000861 213 RAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDD 290 (1249)
Q Consensus 213 ~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D 290 (1249)
..+++++..++...++. ..+..++|-+..-|.|.-++||.+|.++|.++...++. ..| +-++|.|-....|
T Consensus 272 ~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-----~dI--~~~ip~Lld~l~d 344 (569)
T KOG1242|consen 272 MASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-----PDI--QKIIPTLLDALAD 344 (569)
T ss_pred HHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-----HHH--HHHHHHHHHHhcC
Confidence 99999999999988875 68899999999999999999999999999999998864 223 4477888888899
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHh
Q 000861 291 PEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELV 370 (1249)
Q Consensus 291 ~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 370 (1249)
|+..+. +|+-.|..+ .|... .-..-...+.|++..=+
T Consensus 345 p~~~~~----e~~~~L~~t--tFV~~-------------------------------------V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 345 PSCYTP----ECLDSLGAT--TFVAE-------------------------------------VDAPSLALMVPILKRGL 381 (569)
T ss_pred cccchH----HHHHhhcce--eeeee-------------------------------------ecchhHHHHHHHHHHHH
Confidence 986665 344444222 11110 00011256667776655
Q ss_pred cCCCCCHHHHHHHHHhchhhhhhcCcc----ccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHH
Q 000861 371 MGPKQTPSIRRALLQDIGNLCSFFGQR----QSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYI 446 (1249)
Q Consensus 371 ~~~D~~~~Vr~all~~i~~l~~f~G~~----~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll 446 (1249)
. +.+...|+..+.-+..+|....-+ ..-..|||-+-.-+-|..+.+|..-...+..+-.-+|...+ ..+.|.+
T Consensus 382 ~--eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l 458 (569)
T KOG1242|consen 382 A--ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPEL 458 (569)
T ss_pred h--hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHH
Confidence 3 456777777777777777666222 23345777777888899999999999999999999999988 8999999
Q ss_pred HHHccCCcHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHH--HHHHHHHHHHH
Q 000861 447 EQALSDATEAV-IVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQW--VRRSVVTFIAA 507 (1249)
Q Consensus 447 ~q~L~D~~e~V-~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~w--iR~~~~~~i~~ 507 (1249)
+.+++++-..+ +.-+.+.|..++.-.-+ ....++++.+..-..+.+.| ||...+.++.-
T Consensus 459 ~e~~~~~k~~~~~~g~aq~l~evl~~~~v--~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~ 520 (569)
T KOG1242|consen 459 SETLTSEKSLVDRSGAAQDLSEVLAGLGV--EKVEDILPEILANASSVLIDERIRDGVIWLFYL 520 (569)
T ss_pred HHhhccchhhhhhHHHhhhHHHHHhcccc--hHHHHHHHHHHHHHhhccchhhhccCeeehhhc
Confidence 99999987766 56666677776664222 34447888887777777666 88877766543
No 285
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.7e-06 Score=102.51 Aligned_cols=355 Identities=15% Similarity=0.155 Sum_probs=242.2
Q ss_pred CCCCCCCCCCCCccccccccccccccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCC
Q 000861 109 NVKPMPEDVPNSTFSQDLRNSSVESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMK 188 (1249)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1249)
+.++-|+|+-++-++............+...-+++.+...++.-.+.+.. .+..+...+ + ..
T Consensus 107 tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~-~~ag~v~g~-------~----------i~ 168 (569)
T KOG1242|consen 107 TPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY-GLAGLVNGL-------G----------IE 168 (569)
T ss_pred CCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH-HHHHHHcCc-------H----------Hh
Confidence 44556667766666666666666666666666666655444433333322 111111111 0 11
Q ss_pred cccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCCh--HHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccc
Q 000861 189 CEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDD--EDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVR 266 (1249)
Q Consensus 189 ~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~d--e~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~ 266 (1249)
...-..|+.-+.-.+++-++...|..++-.+..+...++. |-.+-.++|-++.-+.|....||-+|..+...++..+.
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 1222347888899999977777776666666777777763 44556777888888889999999999999999988775
Q ss_pred ccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhh
Q 000861 267 NFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQL 346 (1249)
Q Consensus 267 ~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1249)
.. -....+.|.|..+-.+ .|.=..+.++-++.++..+.+.++.
T Consensus 249 ~~------aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~------------------------------ 291 (569)
T KOG1242|consen 249 AY------AVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSL------------------------------ 291 (569)
T ss_pred cc------hhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHH------------------------------
Confidence 32 2223233334444444 8999999999999888887754444
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHh-h
Q 000861 347 QRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYG-Q 425 (1249)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~-~ 425 (1249)
....+.|.+.+-|. |..++||.+..+.|.++|.++.... .+.++|-|+..+.|+.-.+..++=. .
T Consensus 292 -----------~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~ 357 (569)
T KOG1242|consen 292 -----------CLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLG 357 (569)
T ss_pred -----------HHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhc
Confidence 34688899998884 8899999999999999999986544 4556777778888988666554322 2
Q ss_pred hhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCC-chH----HHHHHHHHhcccccCCCHHHHHH
Q 000861 426 IVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYL-RKR----ILLEMIERAFPLLCYPSQWVRRS 500 (1249)
Q Consensus 426 i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~-~~~----~~~~l~~~~~~ll~hpn~wiR~~ 500 (1249)
-.....+|-..++ ..|.|++.++|.+......-++......||. |. ... .+-+|+|.+-.-+.+|-.=+|..
T Consensus 358 ~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~--LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 358 ATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCK--LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred ceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHH--hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 2234456666665 6899999999999999998887777777777 33 222 34455555555666777779999
Q ss_pred HHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCc
Q 000861 501 VVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 501 ~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i 536 (1249)
+.+.+..+-+.+|..-+ ..+.|.+..-++++-...
T Consensus 435 aarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~ 469 (569)
T KOG1242|consen 435 AARALGALLERLGEVSF-DDLIPELSETLTSEKSLV 469 (569)
T ss_pred HHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhh
Confidence 99999999999997766 666777766666554433
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=2.6e-06 Score=89.96 Aligned_cols=204 Identities=13% Similarity=0.196 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCC------ccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKL------EKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~------~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
|+.+.++.+- .|+++..++.+......++ +......+..++..|.++-.+-..+--+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555443 4455555554444433322 11111112233333443222222333456799999999999999
Q ss_pred ccccccCCCccccccCccceeeecC-CCCcEEEEEEecCCCCCccEEEEEE-----CCCeEEEEEcCCCccceeeecCCC
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDT-KEGAIVTLVNYNTDNCASHMFMYST-----QNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g~~L~sgs-----~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
.+. .. .+ .+.... |.+. .+.+ +... ++.+.++. .-+..++|+++..+....-.. .
T Consensus 118 ~~~-~~---~~--------~~~i~~~~~~~-as~~-~~~~---~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~ 178 (319)
T KOG4714|consen 118 TDK-DL---AL--------MSRIPSIHSGS-ASRK-ICRH---GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A 178 (319)
T ss_pred chH-HH---hh--------hhhcccccccc-cccc-eeec---ccEEecCCcceEeeccceeeeccccccccccccc--c
Confidence 882 10 00 001110 1111 1111 1111 12333221 224456666664433221111 2
Q ss_pred CCceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEE
Q 000861 986 EGYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVS 1064 (1249)
Q Consensus 986 ~~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~ 1064 (1249)
...|+++|-+|.. +.+++|+.||.+.+||.|......++-..|..+|..+-| +|... ..|+++++||.+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F-Hpk~p--------~~Lft~sedGslw 249 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF-HPKNP--------EHLFTCSEDGSLW 249 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheec-cCCCc--------hheeEecCCCcEE
Confidence 3349999999954 778889999999999999987777766779999999999 98654 4799999999999
Q ss_pred EEECCC
Q 000861 1065 LWNAEN 1070 (1249)
Q Consensus 1065 vWDl~t 1070 (1249)
.||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999875
No 287
>PTZ00429 beta-adaptin; Provisional
Probab=98.49 E-value=6.2e-06 Score=103.98 Aligned_cols=283 Identities=13% Similarity=0.094 Sum_probs=169.3
Q ss_pred HHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchh
Q 000861 198 LLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFP 277 (1249)
Q Consensus 198 ~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~ 277 (1249)
-++.++.. .....|..+.-.+..+++.-.+.. -..+..|..=++|+.|.||+.|+|+|+.+-. .-+.
T Consensus 72 dVvk~~~S-~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----------~~i~ 138 (746)
T PTZ00429 72 DVVKLAPS-TDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----------SSVL 138 (746)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----------HHHH
Confidence 34446655 666777776666666665443333 3568888999999999999999999986542 2466
Q ss_pred hchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhh---c
Q 000861 278 EYILPMLSMLPDDPEESVRICYASNIAKLALTAY------GFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ---R 348 (1249)
Q Consensus 278 eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~------rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 348 (1249)
+|+++.+++.+.|++++||-+.|-|+..|..... +|.+.-+.+ +...+. +....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L-----L~D~dp--------~Vv~nAl~aL~e 205 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL-----LNDNNP--------VVASNAAAIVCE 205 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH-----hcCCCc--------cHHHHHHHHHHH
Confidence 8999999999999999999999999999865422 233222211 111000 00000000 0
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhh
Q 000861 349 LN--ADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQI 426 (1249)
Q Consensus 349 ~~--~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i 426 (1249)
.. ....+...+..+..++ ..+ ++-+..-+..+|+-+..... ..+.....||..+..+|+-.|..|-.+.+..|
T Consensus 206 I~~~~~~~l~l~~~~~~~Ll-~~L--~e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~i 280 (746)
T PTZ00429 206 VNDYGSEKIESSNEWVNRLV-YHL--PECNEWGQLYILELLAAQRP--SDKESAETLLTRVLPRMSHQNPAVVMGAIKVV 280 (746)
T ss_pred HHHhCchhhHHHHHHHHHHH-HHh--hcCChHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 0011222233332222 222 23345555555555433111 01122345777788888888999999999999
Q ss_pred hhhhcccChhhHHHh---HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHH
Q 000861 427 VYVCFFVGERSVEEY---LLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVT 503 (1249)
Q Consensus 427 ~~la~~lG~~~~~~~---llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~ 503 (1249)
..+......+..++. |.+.++.+ .-....|+.-+|+++..|++.. +..+..-+.....+..+|++ ||...++
T Consensus 281 l~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf~~~~~~Ff~~~~Dp~y-IK~~KLe 355 (746)
T PTZ00429 281 ANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLLRTNLDSFYVRYSDPPF-VKLEKLR 355 (746)
T ss_pred HHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHHHHHHHhhhcccCCcHH-HHHHHHH
Confidence 999887765544443 33444444 4467789999999998887741 22222223344456667776 7887777
Q ss_pred HHHHHhhcCCccc
Q 000861 504 FIAASSESLGAVD 516 (1249)
Q Consensus 504 ~i~~~a~~l~~~d 516 (1249)
++..++..=+..+
T Consensus 356 IL~~Lane~Nv~~ 368 (746)
T PTZ00429 356 LLLKLVTPSVAPE 368 (746)
T ss_pred HHHHHcCcccHHH
Confidence 7777776555444
No 288
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.49 E-value=4.6e-07 Score=113.12 Aligned_cols=310 Identities=18% Similarity=0.176 Sum_probs=214.0
Q ss_pred hhHHHhHhhhhc---CCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHH
Q 000861 137 LLQSISDAFRKN---GHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRR 213 (1249)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~ 213 (1249)
.+.-+.+++.+| +.+.+|-++...|..+. ..+-+-.+++.|..++.+ ..|.+|.
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----------------------~~~~~~~l~~~v~~ll~~-~~~~VRk 132 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----------------------TPEMAEPLIPDVIKLLSD-PSPYVRK 132 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----------------------SHHHHHHHHHHHHHHHHS-SSHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----------------------ccchhhHHHHHHHHHhcC-CchHHHH
Confidence 444456666444 44578888887777764 233455688999999999 9999999
Q ss_pred HHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCch
Q 000861 214 AAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEE 293 (1249)
Q Consensus 214 ~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~ 293 (1249)
+|+..+..+.....+..... ++|.+..+++|..+.|+.+|+..+..+ +..+.... -+...+...|..++.++++
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i----~~~~~~~~-~~~~~~~~~L~~~l~~~~~ 206 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI----KCNDDSYK-SLIPKLIRILCQLLSDPDP 206 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH----HCTHHHHT-THHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH----ccCcchhh-hhHHHHHHHhhhcccccch
Confidence 99999999999866655444 899999999999999999999999988 11111101 2223345555655577887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCC
Q 000861 294 SVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGP 373 (1249)
Q Consensus 294 ~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~ 373 (1249)
.+++.+...+..++..-. ..... ..+.+.+..++.
T Consensus 207 ~~q~~il~~l~~~~~~~~-----------------------------------------~~~~~--~~~i~~l~~~l~-- 241 (526)
T PF01602_consen 207 WLQIKILRLLRRYAPMEP-----------------------------------------EDADK--NRIIEPLLNLLQ-- 241 (526)
T ss_dssp HHHHHHHHHHTTSTSSSH-----------------------------------------HHHHH--HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcccCCh-----------------------------------------hhhhH--HHHHHHHHHHhh--
Confidence 777776666654432110 01100 345556666662
Q ss_pred CCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCC
Q 000861 374 KQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDA 453 (1249)
Q Consensus 374 D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~ 453 (1249)
...+.|....+.-+..+.... .....+++.|..|++++++.+|...++.+..++..- +..+. .....+.....|+
T Consensus 242 s~~~~V~~e~~~~i~~l~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~-~~~~~~~~l~~~~ 316 (526)
T PF01602_consen 242 SSSPSVVYEAIRLIIKLSPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVF-NQSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHHHHHHHHSSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHG-THHHHHHHHHCSS
T ss_pred ccccHHHHHHHHHHHHhhcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhh-hhhhhhheecCCC
Confidence 456788887777766544332 256778999999999999999999999999998777 33333 4444455556699
Q ss_pred cHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccc-cCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcC
Q 000861 454 TEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLL-CYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQ 532 (1249)
Q Consensus 454 ~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll-~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~ 532 (1249)
+..|+..+++.|..|+. +....++++....++ ..+..-+|..++..|..++....... ...+..+..++...
T Consensus 317 d~~Ir~~~l~lL~~l~~-----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLAN-----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVDTLLKLLEIS 389 (526)
T ss_dssp SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHHHHHHHHHCT
T ss_pred ChhHHHHHHHHHhhccc-----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHHHHHHhhhhc
Confidence 99999999999999876 455567888888888 44466699999999999998884432 22335666666643
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.45 E-value=0.00018 Score=93.89 Aligned_cols=212 Identities=15% Similarity=0.170 Sum_probs=138.4
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEE----ECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVW----DSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHM 909 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIW----D~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~v 909 (1249)
..+.|.++.+-++..-++.+..+|.|.+. |....+. .....-..+|.+++|+||+..|+.++.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------EIVGSVDSGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 34789999999999989999999999999 5444431 122233457999999999999999999999887
Q ss_pred EEccc--------cccCC----------Ccc-ccccCcc--c--------------eeeecCCCCcEEEEEEecCCCCCc
Q 000861 910 FSVDH--------ISRGL----------GNV-EKYSGIS--D--------------IKKKDTKEGAIVTLVNYNTDNCAS 954 (1249)
Q Consensus 910 wdv~~--------~~~~~----------g~~-~~~~~~~--~--------------i~~l~~h~~~V~~l~~fs~d~~~g 954 (1249)
.+-+. ..... |+- ..|.|.. . ...+. ....-..+. |..| |
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS-WRGD---G 221 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS-WRGD---G 221 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE-ECCC---C
Confidence 64321 00000 110 1111110 0 00111 233455676 9998 7
Q ss_pred cEEEEEEC---C---CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec---CCcEEEEeCCCCCcccccc
Q 000861 955 HMFMYSTQ---N---CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS---RGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 955 ~~L~sgs~---d---g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~---dG~I~lWDlr~~~~l~s~~ 1025 (1249)
.++++.+. . ..|++|+-. |....+-+ +-.+--.+++|-|.|+++++... .-.|.+|. |+|..-..|.
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~ 297 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT 297 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence 88888774 2 479999864 65444332 23455668899999999998765 23466665 3555544444
Q ss_pred c---CCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCc
Q 000861 1026 Y---SQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGS 1072 (1249)
Q Consensus 1026 ~---~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~ 1072 (1249)
. +....|..+.| ++++. .|++...|. |.+|-..+..
T Consensus 298 l~~~~~~~~v~~l~W-n~ds~---------iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 298 LRFDPEEEKVIELAW-NSDSE---------ILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCCCCCceeeEEEE-CCCCC---------EEEEEecCC-ceEEEeeCCE
Confidence 3 24568999999 99988 677665444 9999877654
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=5e-06 Score=97.69 Aligned_cols=216 Identities=10% Similarity=0.099 Sum_probs=148.3
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc---------ceeeEeeccCCceEEEEEecCCCEEEEEeCCC
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISF---------RSRLTYHLEGSRALCTMMLRHSAQVVVGACDG 905 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~---------~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg 905 (1249)
....+|++|+....|+|.|+.||.+||-.+.+...+... ...+++.||.+.|.-+.|..+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 346789999999999999999999999988765433221 23457889999999999999999999999999
Q ss_pred eEEEEEccccccCCCccccccCccceeee-cCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKK-DTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l-~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
.|.+|-+- . |.. .-... +-..+.|.+++ |+.+ |..+.....||.|.+=.+... .+|--+.
T Consensus 94 lIiVWmly-k----gsW-------~EEMiNnRnKSvV~Sms-Wn~d---G~kIcIvYeDGavIVGsvdGN-RIwgKeL-- 154 (1189)
T KOG2041|consen 94 LIIVWMLY-K----GSW-------CEEMINNRNKSVVVSMS-WNLD---GTKICIVYEDGAVIVGSVDGN-RIWGKEL-- 154 (1189)
T ss_pred eEEEEeee-c----ccH-------HHHHhhCcCccEEEEEE-EcCC---CcEEEEEEccCCEEEEeeccc-eecchhc--
Confidence 99999886 1 221 00011 11345677888 9999 778988999999888776543 3443322
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCccc-------cccc---CCCCCeeEEEEEcCCCCCcccCCCCCEE
Q 000861 985 EEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVN-------SWQY---SQVCPIEKMCLFVPPPNAAVSTTARPLI 1054 (1249)
Q Consensus 985 h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~-------s~~~---~~~~~I~~l~~~sp~g~~~~~~~~~~~l 1054 (1249)
.......+.|++|...++.+-.+|.+.+||....-..+ .... .....|..++|++ |...-..++++.+
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~--g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT--GPYQPVPPDRPRL 232 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc--CccccCCCCCCEE
Confidence 22345578999999999999999999999975321111 0000 1122466777731 1111233366789
Q ss_pred EEEECCCeEEEEECCCC
Q 000861 1055 YVAAGCNEVSLWNAENG 1071 (1249)
Q Consensus 1055 ~t~s~Dg~I~vWDl~tg 1071 (1249)
+++-..|.+.+-.-++.
T Consensus 233 avcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSEND 249 (1189)
T ss_pred EEEEcCceehhhhhcCC
Confidence 99988888777654443
No 291
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.42 E-value=4.4e-06 Score=98.94 Aligned_cols=325 Identities=19% Similarity=0.224 Sum_probs=226.3
Q ss_pred chhhHHHhHhhhhcCC-cccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHH
Q 000861 135 GELLQSISDAFRKNGH-PFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRR 213 (1249)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~ 213 (1249)
...+-.|..+|+.++. |+|- ...+..+...++.+. +||++ .|.+-++--++| +++.+|.
T Consensus 758 E~lidgil~Afqeqtt~d~vm---l~gfg~V~~~lg~r~----kpylp------------qi~stiL~rLnn-ksa~vRq 817 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTTEDSVM---LLGFGTVVNALGGRV----KPYLP------------QICSTILWRLNN-KSAKVRQ 817 (1172)
T ss_pred HHHHHHHHHHHHhcccchhhh---hhhHHHHHHHHhhcc----ccchH------------HHHHHHHHHhcC-CChhHHH
Confidence 3455667777776666 4433 344556666662222 44444 367777888899 9999999
Q ss_pred HHHHHHHHHhhcC---ChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccc---cccCCCCCcchhhchhhhccCC
Q 000861 214 AAILLLKSSSLFI---DDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLV---RNFPPSDAKIFPEYILPMLSML 287 (1249)
Q Consensus 214 ~a~~ll~~l~~~~---~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v---~~~~~~~~~if~eyilP~l~~l 287 (1249)
.|++++..++..+ ..|..+-.+=-.+...|....|+|--..+.+|..+...+ +-.||... |||.|.++
T Consensus 818 qaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d------llPrltPI 891 (1172)
T KOG0213|consen 818 QAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD------LLPRLTPI 891 (1172)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh------hcccchHh
Confidence 9999999988754 455566666556678888899999877777766666554 34566532 78888888
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHH
Q 000861 288 PDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQ 367 (1249)
Q Consensus 288 ~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (1249)
+....+-| -++||.-+..+|.|=-+. . ....... |.=-++
T Consensus 892 LknrheKV---qen~IdLvg~IadrgpE~------------------------------v------~aREWMR-IcfeLl 931 (1172)
T KOG0213|consen 892 LKNRHEKV---QENCIDLVGTIADRGPEY------------------------------V------SAREWMR-ICFELL 931 (1172)
T ss_pred hhhhHHHH---HHHHHHHHHHHHhcCccc------------------------------C------CHHHHHH-HHHHHH
Confidence 87776555 467776666666521110 0 0011111 111233
Q ss_pred HHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHH
Q 000861 368 ELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIE 447 (1249)
Q Consensus 368 ~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~ 447 (1249)
+|| +-..-++|||..+.++-+++.+|++. +|-.|..=|.-.+.+.|-.---.|.-||.+-|+-+ .||-++
T Consensus 932 elL--kahkK~iRRaa~nTfG~IakaIGPqd----VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt----VLPalm 1001 (1172)
T KOG0213|consen 932 ELL--KAHKKEIRRAAVNTFGYIAKAIGPQD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT----VLPALM 1001 (1172)
T ss_pred HHH--HHHHHHHHHHHHhhhhHHHHhcCHHH----HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh----hhHHHH
Confidence 445 23467999999999999999999964 33333333333466677666666767777777654 699999
Q ss_pred HHccCCcHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhc---CCccceeeEeee
Q 000861 448 QALSDATEAVIVNALDCLAILCKS-GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSES---LGAVDSYVFLAP 523 (1249)
Q Consensus 448 q~L~D~~e~V~~~~l~~l~~l~~~-gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~---l~~~d~~~~l~P 523 (1249)
.=-.-||-.|..-+|++|.-|.|- |-..+..++.++|-+..-+++-..-.|+.+...|..++-. +|.+|..-.|+-
T Consensus 1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence 999999999999999999999997 8889999999998888888888999999999999999843 456666666666
Q ss_pred ccchhhhcCCCC
Q 000861 524 VIRPFLRRQPAS 535 (1249)
Q Consensus 524 ~l~~~l~~~v~~ 535 (1249)
++.|=.-++.|.
T Consensus 1082 ~iWpNIle~sPh 1093 (1172)
T KOG0213|consen 1082 LIWPNILETSPH 1093 (1172)
T ss_pred HhhhhhcCCChH
Confidence 666665555554
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=4.9e-07 Score=69.54 Aligned_cols=39 Identities=44% Similarity=0.725 Sum_probs=37.6
Q ss_pred CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEE
Q 000861 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD 863 (1249)
|+++.++++|.+.|++++|+|++.+|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999999997
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.39 E-value=5.8e-05 Score=98.42 Aligned_cols=279 Identities=10% Similarity=0.095 Sum_probs=165.5
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECC-------------C----------Cccccccce-------------e-
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSR-------------K----------LEKDISFRS-------------R- 876 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~-------------~----------~~~~~~~~~-------------~- 876 (1249)
-...|.+++||||+..++.++.+|++.+.+.. - |++...|+. .
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 35689999999999999999999998876431 0 011111100 0
Q ss_pred -----eEeeccCCceEEEEEecCCCEEEEEeC---C---CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEE
Q 000861 877 -----LTYHLEGSRALCTMMLRHSAQVVVGAC---D---GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLV 945 (1249)
Q Consensus 877 -----~t~~~h~~~V~sl~fspdg~~Lasgs~---D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~ 945 (1249)
.... +...-..++|-.||.++|+.+- . ..++||+-+ |.+... -+.-.+--.+++
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re------G~L~st--------SE~v~gLe~~l~ 263 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE------GELQST--------SEPVDGLEGALS 263 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC------ceEEec--------cccCCCccCCcc
Confidence 0111 2234567899999999998764 2 578899877 544111 111112222455
Q ss_pred EecCCCCCccEEEEEEC---CCeEEEEEcCCCccceeeecC--CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC-
Q 000861 946 NYNTDNCASHMFMYSTQ---NCGIHLWDTRSNSNTWTLKAI--PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV- 1019 (1249)
Q Consensus 946 ~fs~d~~~g~~L~sgs~---dg~I~iwDlrt~~~~~~l~~~--~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~- 1019 (1249)
|.|. |.++++... ...|.+|. |+|-....+..+ .....|..+.|++++..|++...|. |.+|-..+..
T Consensus 264 -WrPs---G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 264 -WRPS---GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred -CCCC---CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 9998 778887764 34566666 455444444433 4567899999999999999987665 9999876543
Q ss_pred -cccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCC
Q 000861 1020 -PVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARP 1098 (1249)
Q Consensus 1020 -~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p 1098 (1249)
..+.+..+....+..+.| +|... ..+.+.+.+|.+..+++.-.. ... .+... .
T Consensus 338 YLKqei~~~~~~~~~~~~W-dpe~p--------~~L~v~t~~g~~~~~~~~~~v----~~s-~~~~~------------~ 391 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKW-DPEKP--------LRLHVLTSNGQYEIYDFAWDV----SRS-PGSSP------------N 391 (928)
T ss_pred EEEEEEEccCCCCCCceEE-CCCCC--------CEEEEEecCCcEEEEEEEEEE----Eec-CCCCc------------c
Confidence 233333334445566999 88754 357777776777665542110 000 00000 0
Q ss_pred CCCCCCCccccccccccccccccCCCC-----CCCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCC
Q 000861 1099 SSRSNPKTDLRRNVNQKYRVDELNEPP-----PRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1099 ~~~~~~s~dg~~~~~~~~~~~~~~~~~-----~~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~ 1159 (1249)
.....+--||..+....++...+..+. .-...|.+++|++++ .+++-..||.|.+|.....
T Consensus 392 D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 392 DNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 000011123333333333333332221 112579999999998 7888899999999986543
No 294
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=3.3e-06 Score=99.31 Aligned_cols=302 Identities=16% Similarity=0.168 Sum_probs=190.2
Q ss_pred cccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccc
Q 000861 189 CEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVR 266 (1249)
Q Consensus 189 ~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~ 266 (1249)
..-+.++++-.+-..+| .++.-|-.|+..+-.+.-.-++. ..+|..+..+.+|..|+.|+||...++++.-+++.-
T Consensus 169 ~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr- 246 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR- 246 (885)
T ss_pred cCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc-
Confidence 34466788888888888 68888888887777765555554 477888999999999999999999999999888732
Q ss_pred ccCCCCCcchhhchhhhcc-------CCCCCCchhHHHHHHHHHHHHHHH------HHHHHHHH-----HHhh--hc--c
Q 000861 267 NFPPSDAKIFPEYILPMLS-------MLPDDPEESVRICYASNIAKLALT------AYGFLVHS-----IRLS--EA--G 324 (1249)
Q Consensus 267 ~~~~~~~~if~eyilP~l~-------~l~~D~~~~VR~~~A~~l~~LA~~------a~rf~~~~-----~~~~--~~--~ 324 (1249)
|+.|.|.+. ...+|.++.|-....+-.-.+|+. ...++.-- +.++ ++ -
T Consensus 247 ----------~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 247 ----------PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred ----------HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 334444332 334677666654444433333332 11111100 0000 00 0
Q ss_pred cccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHH-----Hhc-----CC----------CCCHHHHHHHH
Q 000861 325 VLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQE-----LVM-----GP----------KQTPSIRRALL 384 (1249)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----Ll~-----~~----------D~~~~Vr~all 384 (1249)
++. +.+.+...+..+ +.|-|-|.. +.. |. +.+...|+.-.
T Consensus 317 LL~--~~eeD~~vpDre------------------eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 317 LLK--NNEEDESVPDRE------------------EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred Hhc--CccccccCCchh------------------hhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 011 000000000000 122222221 000 00 12377999999
Q ss_pred HhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHH---hHHHHHHHHccCCcHHHHHHH
Q 000861 385 QDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEE---YLLPYIEQALSDATEAVIVNA 461 (1249)
Q Consensus 385 ~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~---~llPll~q~L~D~~e~V~~~~ 461 (1249)
..|.-|+.+||.+ .-++++|+|..-|-...|-+|.|=+-++..||.= +-+.+-. .|.|++++.|.|--..||--.
T Consensus 377 AaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 9999999999986 4567889998888889999999877777666621 1111112 479999999999999998765
Q ss_pred HHHHHHHHhc--CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhh
Q 000861 462 LDCLAILCKS--GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFL 529 (1249)
Q Consensus 462 l~~l~~l~~~--gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l 529 (1249)
--.|.....- ..-....+..++..++..+++.|.||.+|++...+++-+.-+.. |.|++.+.|
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-----LVp~l~~IL 519 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-----LVPYLEYIL 519 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-----hHHHHHHHH
Confidence 5555553332 11133455667788888889999999999999999998766544 555554444
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.37 E-value=3.9e-05 Score=81.49 Aligned_cols=201 Identities=9% Similarity=0.040 Sum_probs=135.5
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEE-EecCCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM-MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~-fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
..+||.|+.-|...+|.+.+.+.. ......|...|+-+. .+.....+..++.|.++++.+++ +..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h-----~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~------~~s--- 149 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGH-----LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS------GDS--- 149 (344)
T ss_pred ccEEEeccccceeeeecccCcccc-----eeeecccccchhhhhhhcccccceeeccCCcceeEEEEe------cCc---
Confidence 348999999999999999876531 112222322222111 11122346678899999999998 221
Q ss_pred cCccceeeecCCCC--cEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc-cceeeecCCCCCceEEEEEcCCCCEEE
Q 000861 926 SGISDIKKKDTKEG--AIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS-NTWTLKAIPEEGYVSSLVTGPCGNWFV 1002 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~--~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~-~~~~l~~~~h~~~I~sl~~spdg~~L~ 1002 (1249)
.+ ...|.. ...++. ++++ ++++++.+....|..|.+.... .+..+...+..+.-.+..|+.....+|
T Consensus 150 ~~------~~~h~~~~~~ns~~-~snd---~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 150 NK------FAVHNQNLTQNSLH-YSND---PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFA 219 (344)
T ss_pred cc------ceeeccccceeeeE-EcCC---CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEE
Confidence 00 011222 255666 8999 7799999999999999987532 222222233445556778999999999
Q ss_pred EEecCCcEEEEeCCCCCcc----cccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1003 SGSSRGVLTLWDLRFLVPV----NSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1003 sgs~dG~I~lWDlr~~~~l----~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
+++.||++.+||+|..... .+-+..|.+.++.+.| +|.|. -.+|+..-.-+.+.+-|++++...+.+.
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F-sl~g~-------lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF-SLYGL-------LDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe-cCCCc-------ceEEEEecCcceEEEEEcccCceeeEEe
Confidence 9999999999999964322 1223347889999999 88665 3466666667889999999998888776
Q ss_pred c
Q 000861 1079 T 1079 (1249)
Q Consensus 1079 ~ 1079 (1249)
.
T Consensus 292 i 292 (344)
T KOG4532|consen 292 I 292 (344)
T ss_pred c
Confidence 3
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=1.7e-06 Score=102.13 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=132.7
Q ss_pred ceeEEEEcCCC--C-EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 000861 837 AVNEIAISHDH--S-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 837 ~V~~la~spdg--~-~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg~I~vwdv 912 (1249)
.|-...|+|.. . .+++.+. ..-.+|++...... .....+.+|+..|+.+.|.|.. ..+++++.|-.++.||+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~---aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSN---AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred hhcceecccCCCCceeEEecCc-chhhhhhhhcCCcc---ceEEEEecCccceeccccCCCCCcceeeccccccceeeec
Confidence 34455666643 2 3444443 45568888754421 1345778899999999999955 68889999999999999
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecCCCCCceEE
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIPEEGYVSS 991 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~h~~~I~s 991 (1249)
.. ....+..+..-......+. |+... ..+++.+....|.+||.+.|.. +..++ +|-..|.+
T Consensus 145 rS------------p~~p~ys~~~w~s~asqVk-wnyk~---p~vlasshg~~i~vwd~r~gs~pl~s~K--~~vs~vn~ 206 (1081)
T KOG0309|consen 145 RS------------PHRPFYSTSSWRSAASQVK-WNYKD---PNVLASSHGNDIFVWDLRKGSTPLCSLK--GHVSSVNS 206 (1081)
T ss_pred cC------------CCcceeeeecccccCceee-ecccC---cchhhhccCCceEEEeccCCCcceEEec--ccceeeeh
Confidence 81 1123333333344455666 77663 3566667788999999998754 44554 37788888
Q ss_pred EEEcCC-CCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 992 LVTGPC-GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 992 l~~spd-g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+.|..- ...+.+.+.||+|+.||......-.........+|..-++ .|-|. +.++.-.-+++.+.+++.+
T Consensus 207 ~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~-~Pfg~-------g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 207 IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY-LPFGE-------GYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred HHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc-cccCc-------eeEeccccCCeeeeecccc
Confidence 888763 3578889999999999986544333323335567888888 88776 3334333444455555444
No 297
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.36 E-value=2.3e-05 Score=91.39 Aligned_cols=310 Identities=18% Similarity=0.206 Sum_probs=215.4
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcC---ChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccc---c
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFI---DDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVR---N 267 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~---~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~---~ 267 (1249)
.|++-++..+|+ +.+.+|..|+++...|+..+ +.+..+..+=-.+..-|....|+|--..+.++..+...+. -
T Consensus 604 ~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 604 MIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 478888999999 99999999999998887754 4555566665566788888899998887777776665443 2
Q ss_pred cCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 268 FPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 268 ~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
.||.+. |||.|.++.....+-| .|+.|.-+..++.+=-+
T Consensus 683 qpPi~~------ilP~ltPILrnkh~Kv---~~nti~lvg~I~~~~pe-------------------------------- 721 (975)
T COG5181 683 QPPISG------ILPSLTPILRNKHQKV---VANTIALVGTICMNSPE-------------------------------- 721 (975)
T ss_pred CCchhh------ccccccHhhhhhhHHH---hhhHHHHHHHHHhcCcc--------------------------------
Confidence 345543 7777777776665444 34444444444330000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhh
Q 000861 348 RLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIV 427 (1249)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~ 427 (1249)
+- ........-.. +.++| +.-+-++||++.+.++-+...+|++..- -.|..=|.-.+.+.|-.-.-.|.
T Consensus 722 -yi---~~rEWMRIcfe-Lvd~L--ks~nKeiRR~A~~tfG~Is~aiGPqdvL----~~LlnnLkvqeRq~RvctsvaI~ 790 (975)
T COG5181 722 -YI---GVREWMRICFE-LVDSL--KSWNKEIRRNATETFGCISRAIGPQDVL----DILLNNLKVQERQQRVCTSVAIS 790 (975)
T ss_pred -cC---CHHHHHHHHHH-HHHHH--HHhhHHHHHhhhhhhhhHHhhcCHHHHH----HHHHhcchHHHHHhhhhhhhhhh
Confidence 00 00111111112 22344 2346799999999999999999987533 33333334456677776667777
Q ss_pred hhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Q 000861 428 YVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS-GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIA 506 (1249)
Q Consensus 428 ~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~-gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~ 506 (1249)
-+|.+-|+-+ .||-++.--.-||..|..-+|++|.-+.|- |-..+..++.+.|-+..-+.+-..-.|+.+...|.
T Consensus 791 iVae~cgpfs----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 791 IVAEYCGPFS----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhHhhcCchh----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 7888888765 589999999999999999999999999887 88888889999998888889888889999999998
Q ss_pred HHh---hcCCccceeeEeeeccchhhhcCCCCcC-CHHHHHhccCCCCc-HHHHHHHHH
Q 000861 507 ASS---ESLGAVDSYVFLAPVIRPFLRRQPASLA-SVKALLSCLKPPVS-REVFYQVLE 560 (1249)
Q Consensus 507 ~~a---~~l~~~d~~~~l~P~l~~~l~~~v~~i~-~~~~ll~~l~~Pls-R~vf~~~~~ 560 (1249)
.++ .-.|.+|..-.|+-++.|=.-++.|.+. +..-=++++..-|. -.++.++..
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q 925 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ 925 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 887 4588999999999988888888877531 22222333333333 345555544
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=2.6e-05 Score=93.04 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=161.8
Q ss_pred ceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC------------CEEEEEeCC
Q 000861 837 AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS------------AQVVVGACD 904 (1249)
Q Consensus 837 ~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg------------~~Lasgs~D 904 (1249)
.-.++.|+|.| +||-||. ..|.+-|..+.+ ...++..|...|+.+.|.|.. -.||++...
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q------~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ------LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhh------hhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 35678899887 6777765 578888888776 355778888999999998732 146777778
Q ss_pred CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc-cEEEEEECCCeEEEEEcCCCccceeeecC
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS-HMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g-~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
|.|.+||... +. .+..+..+..++.+++ |-+...+. ..+++......|.+|+..+|+..|....
T Consensus 89 GrIil~d~~~-----~s--------~~~~l~~~~~~~qdl~-W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y- 153 (1062)
T KOG1912|consen 89 GRIILVDFVL-----AS--------VINWLSHSNDSVQDLC-WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY- 153 (1062)
T ss_pred CcEEEEEehh-----hh--------hhhhhcCCCcchhhee-eeeccCcchheeEEecCCcEEEEEEccCCceeecccc-
Confidence 9999999981 21 2344555677777777 54432223 5888888899999999999999998854
Q ss_pred CCCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCC-CC---ccccc--ccCCCC------------C-------------
Q 000861 984 PEEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRF-LV---PVNSW--QYSQVC------------P------------- 1031 (1249)
Q Consensus 984 ~h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~-~~---~l~s~--~~~~~~------------~------------- 1031 (1249)
.+....|+.++| |.+.+..-+..|.+-+-+.-- .+ +.+.+ ..+|.. .
T Consensus 154 -s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 154 -SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred -CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 456778899999 667777777888877776521 11 11111 111111 0
Q ss_pred eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccc
Q 000861 1032 IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRN 1111 (1249)
Q Consensus 1032 I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~ 1111 (1249)
.-.++| +|.-+ -++...-..++.++|++-..|+.+.....+
T Consensus 233 ~a~faf-~p~~r---------n~lfi~~prellv~dle~~~~l~vvpier~----------------------------- 273 (1062)
T KOG1912|consen 233 CAQFAF-SPHWR---------NILFITFPRELLVFDLEYECCLAVVPIERG----------------------------- 273 (1062)
T ss_pred HHhhhc-Chhhh---------ceEEEEeccceEEEcchhhceeEEEEeccC-----------------------------
Confidence 011233 44433 344455677899999987777766653222
Q ss_pred ccccccccccCCCCCCCCCeEEEeecCCC---eEEEEeCCCcEEEEeCCC
Q 000861 1112 VNQKYRVDELNEPPPRLLGIRSLLPLPGG---DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~V~sl~~spdg---~L~tgs~Dg~IriWDl~~ 1158 (1249)
++.-+.+-|++ .|+++-.||++.+|-.+.
T Consensus 274 ------------------~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 274 ------------------GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ------------------CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 33344555665 899999999999997654
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.33 E-value=4.9e-06 Score=93.20 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=109.3
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC---CeEEEEEcccc
Q 000861 839 NEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD---GIIHMFSVDHI 915 (1249)
Q Consensus 839 ~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D---g~I~vwdv~~~ 915 (1249)
..+..+++++++|.+..+....++++....+.. +....+.. ...-+++.|..+......+..- ..+.+|.+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~--kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA--KLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcc--eeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 344456666677766666666666655443211 11111211 1224455666555555554444 4444555440
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
+ ..+..-+|-.-+++++ ++|| +++++++..|..|++-.....-.+..+- -+|...|..+++-
T Consensus 142 ----~---------~~~~~lGhvSml~dVa-vS~D---~~~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~ 203 (390)
T KOG3914|consen 142 ----G---------RCEPILGHVSMLLDVA-VSPD---DQFIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLT 203 (390)
T ss_pred ----c---------Ccchhhhhhhhhheee-ecCC---CCEEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeec
Confidence 1 2334556888899998 9999 6899999999999998877665555554 4799999999998
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCcccccc
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~~~~l~s~~ 1025 (1249)
++. .|++|+.|++|++||+++|+.+.++.
T Consensus 204 ~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 DNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 765 58999999999999999999987654
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.32 E-value=7.6e-06 Score=86.49 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=90.8
Q ss_pred ccEEEEEECCCeEEEEEcCCCccc-eeeecCCCCCceEEEEEcCCCCEEEEEe-----cCCcEEEEeCCCCCcccccccC
Q 000861 954 SHMFMYSTQNCGIHLWDTRSNSNT-WTLKAIPEEGYVSSLVTGPCGNWFVSGS-----SRGVLTLWDLRFLVPVNSWQYS 1027 (1249)
Q Consensus 954 g~~L~sgs~dg~I~iwDlrt~~~~-~~l~~~~h~~~I~sl~~spdg~~L~sgs-----~dG~I~lWDlr~~~~l~s~~~~ 1027 (1249)
++-++++..||.+.+++.+.-..+ ..+ +.....-.+.++...++.+.++. .-+..+.|+++....+..-..
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i--~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~- 177 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRI--PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK- 177 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhc--ccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-
Confidence 347899999999999998752111 111 11111122223333444444432 124566777764333222111
Q ss_pred CCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcc
Q 000861 1028 QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTD 1107 (1249)
Q Consensus 1028 ~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~d 1107 (1249)
....|.+++- +|..+ ..+++|++||.+.+||.+.......+-
T Consensus 178 ~~~~v~~l~~-hp~qq--------~~v~cgt~dg~~~l~d~rn~~~p~S~l----------------------------- 219 (319)
T KOG4714|consen 178 ALDAVTALCS-HPAQQ--------HLVCCGTDDGIVGLWDARNVAMPVSLL----------------------------- 219 (319)
T ss_pred ccccchhhhC-Ccccc--------cEEEEecCCCeEEEEEcccccchHHHH-----------------------------
Confidence 2234888888 88876 578888889999999998662211110
Q ss_pred ccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCCC
Q 000861 1108 LRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1108 g~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~~ 1158 (1249)
..|...++.+-|+|.. .|+++++||.+..||..+
T Consensus 220 -----------------~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 -----------------KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----------------HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2233478888898876 899999999999999875
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=9e-06 Score=91.68 Aligned_cols=291 Identities=14% Similarity=0.035 Sum_probs=180.0
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-CCeEEEEEc
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-DGIIHMFSV 912 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-Dg~I~vwdv 912 (1249)
|++.|+.+..+ -.+++.+||.||.+|.|.-...+-.. -...+..|.+.|.+++.+-+|..+.+.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvE---fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVE---FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcccee---ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 78888887655 35699999999999999866532111 12345678888999999999999999777 999999999
Q ss_pred cccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 913 DHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 913 ~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
+...-.. -++ +.--.+.+..+ .++...-...-++.-.+|.|.++|-+...+...+.-.-|..+|.++
T Consensus 84 En~Dmin----------miK-L~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 84 ENFDMIN----------MIK-LVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred eccchhh----------hcc-cccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence 8321100 011 11112223222 2332111123333446799999998876543333224589999999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCC--CCccc--ccccC----------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRF--LVPVN--SWQYS----------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~--~~~l~--s~~~~----------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
.+.+-+..+++....|.|..|.... ..+-. .|... ......+++| +|++. .+.+-+
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef-sp~g~---------qistl~ 220 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF-SPDGA---------QISTLN 220 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE-ccccC---------cccccC
Confidence 9999999999999999999998752 11111 11111 2345678899 99998 788888
Q ss_pred CCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecC
Q 000861 1059 GCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLP 1138 (1249)
Q Consensus 1059 ~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~sp 1138 (1249)
.|..|++++..+|+..+.+....... .+.|..++...... -|+..+. ..++.. .+. ..-..+.|..
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~-------~~q~ks~y~l~~Ve-lgRRmav----erelek-~~~-~~~~~~~fde 286 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDA-------QYQPKSPYGLMHVE-LGRRMAV----ERELEK-HGS-TVGTNAVFDE 286 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhh-------hhccccccccceee-hhhhhhH----HhhHhh-hcC-cccceeEEcC
Confidence 99999999999999888876432211 11111111110000 0111100 001111 111 1234566777
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCCccEEEe
Q 000861 1139 GG-DLLTGGTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1139 dg-~L~tgs~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
.| +|+-|+.= -|++.++.+++.++++.
T Consensus 287 s~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 287 SGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred CCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 77 77776654 48999999988887764
No 302
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.00073 Score=75.56 Aligned_cols=217 Identities=11% Similarity=0.162 Sum_probs=135.6
Q ss_pred eccccCceeEEEEcCCCCEEEEEEC---CCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-CCe
Q 000861 831 LQEHCSAVNEIAISHDHSFFVSASD---DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-DGI 906 (1249)
Q Consensus 831 L~~H~~~V~~la~spdg~~laTgs~---DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-Dg~ 906 (1249)
+-++.+.++=++|+|++++|.++-. +|.|--|.+....-..++-......+ .+-+.++++++|++++++.. -|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~ 112 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGS 112 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCce
Confidence 3456778889999999988887754 57788777765311111111222222 23488999999999999876 488
Q ss_pred EEEEEccccccCCCcccc------ccCcc-ceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCCCccce
Q 000861 907 IHMFSVDHISRGLGNVEK------YSGIS-DIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRSNSNTW 978 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~------~~~~~-~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt~~~~~ 978 (1249)
|.++-+... |.+.. ..+.. ..+. ....+.... |.|+ ++++++..- .-.|.+|++..|....
T Consensus 113 v~v~p~~~d----G~l~~~v~~~~h~g~~p~~rQ---~~~h~H~a~-~tP~---~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 113 VSVYPLQAD----GSLQPVVQVVKHTGSGPHERQ---ESPHVHSAN-FTPD---GRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEcccC----CccccceeeeecCCCCCCccc---cCCccceee-eCCC---CCEEEEeecCCceEEEEEcccCcccc
Confidence 999998622 32200 00000 0010 011255555 8898 677777654 3579999999776532
Q ss_pred eeec-CCCCCceEEEEEcCCCCEEEEEec-CCcEEEEeCCCC-Cccccc------ccC--CCCCeeEEEEEcCCCCCccc
Q 000861 979 TLKA-IPEEGYVSSLVTGPCGNWFVSGSS-RGVLTLWDLRFL-VPVNSW------QYS--QVCPIEKMCLFVPPPNAAVS 1047 (1249)
Q Consensus 979 ~l~~-~~h~~~I~sl~~spdg~~L~sgs~-dG~I~lWDlr~~-~~l~s~------~~~--~~~~I~~l~~~sp~g~~~~~ 1047 (1249)
.-.. .......+-|.|+|++++..+.++ +++|.+|..... ..+..+ ... ...+.-.|.. +|+|+
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi-s~dGr---- 256 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI-SPDGR---- 256 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE-CCCCC----
Confidence 2211 123567889999999998887665 899999998763 222211 111 2335567777 89998
Q ss_pred CCCCCEEEEEEC-CCeEEEEECCC
Q 000861 1048 TTARPLIYVAAG-CNEVSLWNAEN 1070 (1249)
Q Consensus 1048 ~~~~~~l~t~s~-Dg~I~vWDl~t 1070 (1249)
+|+++.. .+.|.+|.+..
T Consensus 257 -----FLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 257 -----FLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred -----EEEEecCCCCeEEEEEEcC
Confidence 7877754 45688887654
No 303
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=0.0004 Score=79.10 Aligned_cols=166 Identities=12% Similarity=0.133 Sum_probs=125.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCC-eEEEEEccccccCCCcccc
Q 000861 846 DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDG-IIHMFSVDHISRGLGNVEK 924 (1249)
Q Consensus 846 dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg-~I~vwdv~~~~~~~g~~~~ 924 (1249)
+|.+++..|. |..-|.+...+-. .--+|.++|.-..+..++..++.|..|| .+-|+|.+ .+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~--------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-----~~---- 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS--------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-----GG---- 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee--------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecC-----Cc----
Confidence 5788888876 6777776655431 2234666788888888888999999999 89999998 22
Q ss_pred ccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE
Q 000861 925 YSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG 1004 (1249)
Q Consensus 925 ~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg 1004 (1249)
.++.+...-+.|.++. .+++ |+.++.+.....|.+.|+.++.....- ....+-|+.+.|+|+++|++-+
T Consensus 393 -----e~kr~e~~lg~I~av~-vs~d---GK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 393 -----EVKRIEKDLGNIEAVK-VSPD---GKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred -----eEEEeeCCccceEEEE-EcCC---CcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEe
Confidence 2455666778899998 8999 789999999999999999999764322 3367899999999999999988
Q ss_pred ecCC----cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 1005 SSRG----VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 1005 s~dG----~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
--+| .|+++|+..++...... + .+.=.+-+| .|+++
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT-~-ta~DfsPaF-D~d~r 501 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTT-P-TAYDFSPAF-DPDGR 501 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecC-C-cccccCccc-CCCCc
Confidence 7776 48999998776654422 1 112234567 78887
No 304
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5.7e-06 Score=97.36 Aligned_cols=285 Identities=18% Similarity=0.231 Sum_probs=188.5
Q ss_pred hHHHHHhhhccCC--CchhHHHHHHHH-HHHhhcCChH---HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccccc
Q 000861 195 IASLLCSCVRNVK--LPHYRRAAILLL-KSSSLFIDDE---DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268 (1249)
Q Consensus 195 ~l~~i~s~~r~~~--~~~~r~~a~~ll-~~l~~~~~de---~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~ 268 (1249)
+|+.++.++..-. ..+--..|+..+ ...++.++.| .-++-++|-|+.+.+.+.|..|..|+.++-+++..-+.-
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 6677777766522 222334444322 2334444432 345668999999999999999999999999887643321
Q ss_pred CCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAY-GFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 269 ~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~-rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
-..-.+..+-.+-.|++|+++.||.-+...+.-|-++-- |..-+
T Consensus 209 ----l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph------------------------------- 253 (885)
T KOG2023|consen 209 ----LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH------------------------------- 253 (885)
T ss_pred ----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-------------------------------
Confidence 011224455566678899999999988877777755421 00000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHh-----------------hh
Q 000861 348 RLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILP-----------------AF 410 (1249)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~-----------------t~ 410 (1249)
...|.+..++.. +|.+-+|-..+-+=...+|.- ..-.++|.||+- .+
T Consensus 254 -----------l~~IveyML~~t--qd~dE~VALEACEFwla~aeq---pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 254 -----------LDNIVEYMLQRT--QDVDENVALEACEFWLALAEQ---PICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred -----------hHHHHHHHHHHc--cCcchhHHHHHHHHHHHHhcC---cCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 022233333333 222223333222211111100 011111112111 12
Q ss_pred hc------------------------------------C----------CCHHHHHHHHhhhhhhhcccChhhHHHhHHH
Q 000861 411 LN------------------------------------D----------RDEQLRAVFYGQIVYVCFFVGERSVEEYLLP 444 (1249)
Q Consensus 411 ln------------------------------------D----------~~w~lR~a~~~~i~~la~~lG~~~~~~~llP 444 (1249)
|+ | .+|.||..=+..+--+|.+.|.+.+ ..++|
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~P 396 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLP 396 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHH
Confidence 22 1 2499999999999999999999976 79999
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEe
Q 000861 445 YIEQALSDATEAVIVNALDCLAILCKS---GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFL 521 (1249)
Q Consensus 445 ll~q~L~D~~e~V~~~~l~~l~~l~~~---gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l 521 (1249)
++.+.|.-++..|+++.+-.|..++|- |.. +.+-+|+|-.++++.+....||.-++=.+...++.+-....+.++
T Consensus 397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~--p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV--PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 999999999999999999999999986 444 345589999999999999999999999999999998888888999
Q ss_pred eeccchhhhcCC
Q 000861 522 APVIRPFLRRQP 533 (1249)
Q Consensus 522 ~P~l~~~l~~~v 533 (1249)
.|++.++++.-+
T Consensus 475 ~pvL~~ll~~ll 486 (885)
T KOG2023|consen 475 KPVLEGLLRRLL 486 (885)
T ss_pred HHHHHHHHHHHh
Confidence 999999988743
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.0004 Score=83.47 Aligned_cols=216 Identities=9% Similarity=-0.051 Sum_probs=128.7
Q ss_pred CCccC--CCCcEEEEeccccCceeEEEEcCCCCE-EEEEECC---CcEEEEECCCCccccccceeeEeeccCCceEEEEE
Q 000861 818 DSGWR--PRGILVAHLQEHCSAVNEIAISHDHSF-FVSASDD---STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMM 891 (1249)
Q Consensus 818 ~~~W~--~~G~lv~~L~~H~~~V~~la~spdg~~-laTgs~D---gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~f 891 (1249)
-.+|- .+|.-.+.+.... .+..-.|+|||+. ++..+.+ ..|.++|+.+++. . .+....+......|
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------~-~lt~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------E-KIASSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE------E-EEecCCCcEEeeEE
Confidence 34554 5666555555443 7888999999984 5544443 4688889988763 1 22223445667889
Q ss_pred ecCCCEEEEE-eCC--CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CC--e
Q 000861 892 LRHSAQVVVG-ACD--GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NC--G 965 (1249)
Q Consensus 892 spdg~~Lasg-s~D--g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg--~ 965 (1249)
+|||+.++.. +.+ ..|.++++. .+. .+.+..+.+...... |+|| |+.++..+. .| .
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~-----~g~---------~~~LT~~~~~d~~p~-~SPD---G~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTN-----TKT---------LTQITNYPGIDVNGN-FVED---DKRIVFVSDRLGYPN 302 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECC-----CCc---------EEEcccCCCccCccE-ECCC---CCEEEEEECCCCCce
Confidence 9999877653 334 456666665 122 222222222222344 9999 666666553 23 6
Q ss_pred EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC---------CcEEEEeCCCCCcccccccCCCCCeeEEE
Q 000861 966 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR---------GVLTLWDLRFLVPVNSWQYSQVCPIEKMC 1036 (1249)
Q Consensus 966 I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d---------G~I~lWDlr~~~~l~s~~~~~~~~I~~l~ 1036 (1249)
|.++|+.+++..... ..+. . ...|+|+|++++..+.. ..|.+.|+..+... .+..+ .......
T Consensus 303 Iy~~dl~~g~~~rlt-~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~ 374 (419)
T PRK04043 303 IFMKKLNSGSVEQVV-FHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPR 374 (419)
T ss_pred EEEEECCCCCeEeCc-cCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeE
Confidence 888899877653222 1111 1 24899999988876654 26888898777543 33322 2233578
Q ss_pred EEcCCCCCcccCCCCCEEEEEECC-C--eEEEEECCCCceeEEEe
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGC-N--EVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~D-g--~I~vWDl~tg~~~~~l~ 1078 (1249)
| +|+|+ .|+..+.+ + .+.+.++. |.....+.
T Consensus 375 ~-SPDG~---------~I~f~~~~~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 375 F-SSDGG---------SIMFIKYLGNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred E-CCCCC---------EEEEEEccCCcEEEEEEecC-CCeeEEee
Confidence 8 99998 56555543 2 36677775 44444443
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.27 E-value=0.00031 Score=76.29 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=91.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEee-ccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCC
Q 000861 841 IAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH-LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGL 919 (1249)
Q Consensus 841 la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~-~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~ 919 (1249)
++.++||++||.- .|..|.|-..++.-....- ..... .....-..++|+||+..||.+...|+|++||+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~--kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~------ 73 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIG--KCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM------ 73 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeE--EEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc------
Confidence 5667778776654 4566666655543221111 11111 112246789999999999999999999999997
Q ss_pred Ccc-ccccCccceeeecC-CCCcEEEEEEecCCCCCc---cEEEEEECCCeEEEEEcCCC-----ccceeeecCCC-CCc
Q 000861 920 GNV-EKYSGISDIKKKDT-KEGAIVTLVNYNTDNCAS---HMFMYSTQNCGIHLWDTRSN-----SNTWTLKAIPE-EGY 988 (1249)
Q Consensus 920 g~~-~~~~~~~~i~~l~~-h~~~V~~l~~fs~d~~~g---~~L~sgs~dg~I~iwDlrt~-----~~~~~l~~~~h-~~~ 988 (1249)
|.. ..... -....+ -...|..+. |.....+. ..|++.+..|.++-|-+..+ +..+++....| ...
T Consensus 74 g~~lf~I~p---~~~~~~d~~~Aiagl~-Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~G 149 (282)
T PF15492_consen 74 GSELFVIPP---AMSFPGDLSDAIAGLI-FLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHG 149 (282)
T ss_pred cceeEEcCc---ccccCCccccceeeeE-eeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCc
Confidence 321 10010 011111 234566665 44332111 25777888898888876432 23444444333 568
Q ss_pred eEEEEEcCCCCEEEEEecC
Q 000861 989 VSSLVTGPCGNWFVSGSSR 1007 (1249)
Q Consensus 989 I~sl~~spdg~~L~sgs~d 1007 (1249)
|.+++++|..+.|++|+..
T Consensus 150 i~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 150 INSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred eeEEEEcCCCCEEEEeccC
Confidence 9999999999988887754
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.26 E-value=0.00015 Score=83.57 Aligned_cols=195 Identities=8% Similarity=0.050 Sum_probs=119.7
Q ss_pred CccCCCCcEEEEecc-ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCE
Q 000861 819 SGWRPRGILVAHLQE-HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~-H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
..|++......+.-+ -.-++..+++||.|.+|++... ..|.+|+-....+ +....|. .|..+.|+|++++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~-------l~~~~~~-~V~~~~fSP~~kY 85 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAK-------LVRFRHP-DVKYLDFSPNEKY 85 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc-cceEEccccchhh-------eeeeecC-CceecccCcccce
Confidence 356644333333333 5568999999999999987765 4589998877653 2233344 4999999999999
Q ss_pred EEEEeCCC---------------eEEEEEccccccCCCccccccCccceeeecCCCCc--EEEEEEecCCCCCccEEEEE
Q 000861 898 VVVGACDG---------------IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGA--IVTLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 898 Lasgs~Dg---------------~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~--V~~l~~fs~d~~~g~~L~sg 960 (1249)
|.+-+..+ .+.+||+. .|.+ +..+.....+ .+-+..|+-+ ..+++..
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-----sg~i--------v~sf~~~~q~~~~Wp~~k~s~~---D~y~ARv 149 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIA-----SGMI--------VFSFNGISQPYLGWPVLKFSID---DKYVARV 149 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEecc-----Ccee--------EeeccccCCcccccceeeeeec---chhhhhh
Confidence 99876543 48888887 2333 2333322222 2322236665 3455544
Q ss_pred ECCCeEEEEEcCCCccc-eeeecCCCCCceEEEEEcCCC--CEEEE-----EecCCcEEEEeCCCCCcccccccCCCCCe
Q 000861 961 TQNCGIHLWDTRSNSNT-WTLKAIPEEGYVSSLVTGPCG--NWFVS-----GSSRGVLTLWDLRFLVPVNSWQYSQVCPI 1032 (1249)
Q Consensus 961 s~dg~I~iwDlrt~~~~-~~l~~~~h~~~I~sl~~spdg--~~L~s-----gs~dG~I~lWDlr~~~~l~s~~~~~~~~I 1032 (1249)
....++++++ ++... ..+.. .....|..+.|+|.+ ..|+. +...+.+++|.+..+..+.+-.. -...-
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~-lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~ 225 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKN-LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSG 225 (561)
T ss_pred -ccCeEEEEec-CCccccCchhh-ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-Eeecc
Confidence 4567999997 44322 11111 123678899999964 33443 45678899999987766654322 11223
Q ss_pred eEEEEEcCCCC
Q 000861 1033 EKMCLFVPPPN 1043 (1249)
Q Consensus 1033 ~~l~~~sp~g~ 1043 (1249)
..+.| ++.|.
T Consensus 226 ~qLkW-~~~g~ 235 (561)
T COG5354 226 VQLKW-QVLGK 235 (561)
T ss_pred cEEEE-ecCCc
Confidence 45777 77776
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=0.00015 Score=80.22 Aligned_cols=221 Identities=20% Similarity=0.222 Sum_probs=130.4
Q ss_pred CCCcEEEEECCCCccccccceeeEeecc--CCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCcccee
Q 000861 855 DDSTVKVWDSRKLEKDISFRSRLTYHLE--GSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIK 932 (1249)
Q Consensus 855 ~DgtVkIWD~~~~~~~~~~~~~~t~~~h--~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~ 932 (1249)
++|+|..||..+++... .+... .....+. ..+++..+++++.++.+..||.. +|++ +.
T Consensus 1 ~~g~l~~~d~~tG~~~W------~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~-----tG~~--------~W 60 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELW------SYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAK-----TGKV--------LW 60 (238)
T ss_dssp -TSEEEEEETTTTEEEE------EEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETT-----TSEE--------EE
T ss_pred CCCEEEEEECCCCCEEE------EEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECC-----CCCE--------EE
Confidence 36899999998887432 22221 1112221 33356678888899999999986 2443 21
Q ss_pred eecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceee-ecCC-CCCceEEEEEcCCCCEEEEEecCCcE
Q 000861 933 KKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTL-KAIP-EEGYVSSLVTGPCGNWFVSGSSRGVL 1010 (1249)
Q Consensus 933 ~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l-~~~~-h~~~I~sl~~spdg~~L~sgs~dG~I 1010 (1249)
............. .. +..+++++.++.|..+|..+|+..|.. .... .............+..+++++.+|.|
T Consensus 61 ~~~~~~~~~~~~~-~~-----~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 61 RFDLPGPISGAPV-VD-----GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL 134 (238)
T ss_dssp EEECSSCGGSGEE-EE-----TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE
T ss_pred Eeeccccccceee-ec-----ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcE
Confidence 2221111000011 22 337788888899999999999999984 3221 11122223333347789999999999
Q ss_pred EEEeCCCCCcccccccCCCC---Ce-------eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecc
Q 000861 1011 TLWDLRFLVPVNSWQYSQVC---PI-------EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTA 1080 (1249)
Q Consensus 1011 ~lWDlr~~~~l~s~~~~~~~---~I-------~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~ 1080 (1249)
..+|+++|+.+......... .+ ..+.+ .++ .+++++.++.+.-+|+.+++..- ...
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~v~~~~~~g~~~~~d~~tg~~~w--~~~ 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI--SDG----------RVYVSSGDGRVVAVDLATGEKLW--SKP 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC--CTT----------EEEEECCTSSEEEEETTTTEEEE--EEC
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEE--ECC----------EEEEEcCCCeEEEEECCCCCEEE--Eec
Confidence 99999999998776542211 11 12222 122 68888888864444999998542 211
Q ss_pred cCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCC
Q 000861 1081 NYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1081 ~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~ 1160 (1249)
.. .+..+....++.++.++.|+.|..||+.+++
T Consensus 201 ~~-----------------------------------------------~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 201 IS-----------------------------------------------GIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SS------------------------------------------------ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CC-----------------------------------------------CccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 00 1222122234477777799999999999987
Q ss_pred cc
Q 000861 1161 RS 1162 (1249)
Q Consensus 1161 ~~ 1162 (1249)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 309
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.24 E-value=0.0017 Score=75.37 Aligned_cols=101 Identities=7% Similarity=-0.023 Sum_probs=67.7
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC----------CCeEEEEEccccccCCCcccccc
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC----------DGIIHMFSVDHISRGLGNVEKYS 926 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~----------Dg~I~vwdv~~~~~~~g~~~~~~ 926 (1249)
++|.+.|..+++. ..++..... -..+ ++|||+.+.++.. +..|.+||.. + .+
T Consensus 27 ~~v~ViD~~~~~v------~g~i~~G~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t----~~----- 88 (352)
T TIGR02658 27 TQVYTIDGEAGRV------LGMTDGGFL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-T----HL----- 88 (352)
T ss_pred ceEEEEECCCCEE------EEEEEccCC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc-c----Cc-----
Confidence 8999999998763 233333222 2234 9999998887755 7899999998 2 22
Q ss_pred CccceeeecCCC------C-cEEEEEEecCCCCCccEEEEEE-C-CCeEEEEEcCCCccceeeec
Q 000861 927 GISDIKKKDTKE------G-AIVTLVNYNTDNCASHMFMYST-Q-NCGIHLWDTRSNSNTWTLKA 982 (1249)
Q Consensus 927 ~~~~i~~l~~h~------~-~V~~l~~fs~d~~~g~~L~sgs-~-dg~I~iwDlrt~~~~~~l~~ 982 (1249)
.++.+.... + ...... ++|+ |++++... . +..|.++|+.+++.+..+..
T Consensus 89 ---~~~~i~~p~~p~~~~~~~~~~~~-ls~d---gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 89 ---PIADIELPEGPRFLVGTYPWMTS-LTPD---NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred ---EEeEEccCCCchhhccCccceEE-ECCC---CCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 122222211 1 122344 8999 77787665 3 78999999999999888865
No 310
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=7.1e-05 Score=90.04 Aligned_cols=308 Identities=16% Similarity=0.189 Sum_probs=207.5
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHH---hhHHHHHHh-cC-CCChhHHHHHHHHHHHHhccccccC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQ---RVLPHVIAM-LS-DPAAIVRCAALETLCDILPLVRNFP 269 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~---~ilP~~~~l-l~-D~~~~VR~~A~~~l~~~l~~v~~~~ 269 (1249)
++..+.+++-+-.....|...|+-+..+++.++.|...+ .++--+++- .+ .++..||.+|+++|-..|...+..=
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 555666777775666789999999999999999985333 344433333 33 3688999999999999999887321
Q ss_pred CCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 270 PSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLV--HSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 270 ~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
-.+ .=-+||+-.+....+-++..||.+.=.||..|...-+.|.. |.+++.+.-. . ..
T Consensus 210 ~~E--~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl-~----am-------------- 268 (859)
T KOG1241|consen 210 NNE--MERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITL-A----AM-------------- 268 (859)
T ss_pred ccH--hhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HH--------------
Confidence 111 22368999999999999999999999999999999988876 3333321000 0 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH----HHhchhhhhhcCccccchhhhhhHhhhhcC-------CCH
Q 000861 348 RLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRAL----LQDIGNLCSFFGQRQSNDFLLPILPAFLND-------RDE 416 (1249)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~al----l~~i~~l~~f~G~~~~~d~lLp~l~t~lnD-------~~w 416 (1249)
++..++... .-.+.-.+.+ |++-++-... =+...+-|.+|-+. +-..++|.|..+|.. .+|
T Consensus 269 -ks~~deVal---QaiEFWstic---eEEiD~~~e~~e~~d~~~~p~~~~fa~~-a~~~v~P~Ll~~L~kqde~~d~DdW 340 (859)
T KOG1241|consen 269 -KSDNDEVAL---QAIEFWSTIC---EEEIDLAIEYGEAVDQGLPPSSKYFARQ-ALQDVVPVLLELLTKQDEDDDDDDW 340 (859)
T ss_pred -cCCcHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHhhcCCCchhhHHHHH-HHhHhhHHHHHHHHhCCCCcccccC
Confidence 000000000 0011111122 1222222111 12233455666554 344588888876642 489
Q ss_pred HHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHhcccccCCC
Q 000861 417 QLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSG--YLRKRILLEMIERAFPLLCYPS 494 (1249)
Q Consensus 417 ~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~g--l~~~~~~~~l~~~~~~ll~hpn 494 (1249)
..-.|---++.-+|..+|-+-+ ...+|++.|-+..|...=|+++.-.+-...+-. .--++..-+.+|.++.+..+|+
T Consensus 341 np~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred cHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 9999999999999999998877 599999999999999999999999998866531 1112345577888889999999
Q ss_pred HHHHHHHHHHHHHHhhcCCccceeeEe----eeccchhhhcC
Q 000861 495 QWVRRSVVTFIAASSESLGAVDSYVFL----APVIRPFLRRQ 532 (1249)
Q Consensus 495 ~wiR~~~~~~i~~~a~~l~~~d~~~~l----~P~l~~~l~~~ 532 (1249)
.|+|.++.-.+..++..+...-....+ ++.+...|.|.
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC
Confidence 999999999999999888754443333 34444555554
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=7.2e-06 Score=89.73 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=118.9
Q ss_pred EEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccc
Q 000861 851 VSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISD 930 (1249)
Q Consensus 851 aTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~ 930 (1249)
++.+.+..|-+-|+.++.. ..+. ..+.|.++.|...++.+..|+.+|.|..+|++...++.+. +
T Consensus 228 fs~G~sqqv~L~nvetg~~-------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~--------~ 291 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW--------C 291 (425)
T ss_pred ecccccceeEEEEeecccc-------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc--------c
Confidence 4555667788889988752 2333 4567999999998999999999999999999833222222 1
Q ss_pred eeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc---ceeeecCCCCCceEEEEEcCCCCEEEEEecC
Q 000861 931 IKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN---TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR 1007 (1249)
Q Consensus 931 i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~---~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d 1007 (1249)
...+ -|...|+++.....+ ++.|++.+.+|+|.+||.|.-++ +.+++.+.....-.-+-+++....+++++.|
T Consensus 292 a~rl-yh~Ssvtslq~Lq~s---~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRL-YHDSSVTSLQILQFS---QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEE-EcCcchhhhhhhccc---cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 2222 277888888744434 56999999999999999997666 5555432222333334556677788899999
Q ss_pred CcEEEEeCCCCCcccccccCCC---CCeeEEEE
Q 000861 1008 GVLTLWDLRFLVPVNSWQYSQV---CPIEKMCL 1037 (1249)
Q Consensus 1008 G~I~lWDlr~~~~l~s~~~~~~---~~I~~l~~ 1037 (1249)
...++|.++.+..+.++..+.. ..+.++++
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~ 400 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF 400 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceeh
Confidence 9999999999998888765432 24556666
No 312
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.18 E-value=0.00025 Score=80.64 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=111.0
Q ss_pred cccCceeEEEEcCCCCEEEEEECCC-cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDS-TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~Dg-tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++++.....+.+.|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 5777888888888888899999999 899999999872 34555567799999999999999998888888889
Q ss_pred ccccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEEECCC----eEEEEEcCCCccceeeecCCCC
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYSTQNC----GIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sgs~dg----~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
++ .|++ +..+ ...+-|+... |+|+ +++++++--+| .|+++|+.+++....-. ..
T Consensus 430 id-----ngnv---------~~idkS~~~lItdf~-~~~n---sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT---~t 488 (668)
T COG4946 430 ID-----NGNV---------RLIDKSEYGLITDFD-WHPN---SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT---PT 488 (668)
T ss_pred ec-----CCCe---------eEecccccceeEEEE-EcCC---ceeEEEecCcceeeeeEEEEecCCCeEEEecC---Cc
Confidence 88 2332 2222 2456688888 9999 78999876554 69999999887543322 23
Q ss_pred CceEEEEEcCCCCEEEEEec
Q 000861 987 GYVSSLVTGPCGNWFVSGSS 1006 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~sgs~ 1006 (1249)
+.=.+-+|+|++++|.--+.
T Consensus 489 a~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 489 AYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ccccCcccCCCCcEEEEEec
Confidence 33445689999988776543
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.4e-05 Score=87.16 Aligned_cols=242 Identities=15% Similarity=0.119 Sum_probs=155.3
Q ss_pred CCCCCccCCCC----cEEEEeccccCceeEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccceeeEeeccCCceEEE
Q 000861 815 SIPDSGWRPRG----ILVAHLQEHCSAVNEIAISHDHSFFVSASD-DSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCT 889 (1249)
Q Consensus 815 ~~~~~~W~~~G----~lv~~L~~H~~~V~~la~spdg~~laTgs~-DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl 889 (1249)
+...+-|.+.+ +.+.++..|-+.|.+++.+-+|.++.|++. |..+|++|+.+-....-.+ +.--.+.+ ++
T Consensus 29 DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK----L~~lPg~a-~w 103 (558)
T KOG0882|consen 29 DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK----LVDLPGFA-EW 103 (558)
T ss_pred chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc----cccCCCce-EE
Confidence 45677898654 577889999999999999999999999888 9999999998754321111 11111111 12
Q ss_pred EEecCC--CEEEE-EeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeE
Q 000861 890 MMLRHS--AQVVV-GACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGI 966 (1249)
Q Consensus 890 ~fspdg--~~Las-gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I 966 (1249)
..++.. ..+++ .-.+|.+.++|-. +.. ......-..|..+|.++. +.+. ++.+++....|.|
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~------~d~-----~q~~~fkklH~sPV~~i~-y~qa---~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGF------GDF-----CQDGYFKKLHFSPVKKIR-YNQA---GDSAVSIDISGMV 168 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCc------CCc-----CccceecccccCceEEEE-eecc---ccceeecccccee
Confidence 222221 13333 3456889998866 110 012233345888999998 8888 6789999999999
Q ss_pred EEEEcCC------Cccceeee-------cCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC------
Q 000861 967 HLWDTRS------NSNTWTLK-------AIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS------ 1027 (1249)
Q Consensus 967 ~iwDlrt------~~~~~~l~-------~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~------ 1027 (1249)
.-|.... .+..+.++ .....+..++++|+|++..+.+-..|..|++++.++|+.++.+...
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~ 248 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY 248 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh
Confidence 9998872 22222222 1234567899999999999999999999999999998876654320
Q ss_pred ---CCCCeeEEEEEcCC--------------CCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1028 ---QVCPIEKMCLFVPP--------------PNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1028 ---~~~~I~~l~~~sp~--------------g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
..-.+..+.| ... +..+..+..+.+++-++-=| |+|.++.++.+.+.+-
T Consensus 249 q~ks~y~l~~Vel-gRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 249 QPKSPYGLMHVEL-GRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccccccceeeh-hhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 0111222222 100 00011122334666665443 8999999999888764
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.14 E-value=0.00027 Score=76.72 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeec-cCCceEEEEEecCC------CEEEEEeCCCeEEEE
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL-EGSRALCTMMLRHS------AQVVVGACDGIIHMF 910 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~-h~~~V~sl~fspdg------~~Lasgs~Dg~I~vw 910 (1249)
=..++||||+.+||.+...|+|+++|+...+. ....+...+.+ -...|..+.|.+.. ..|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 35689999999999999999999999986442 11222212222 22467788887632 256666788888888
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCe-----------EEEEEcCCCcccee
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCG-----------IHLWDTRSNSNTWT 979 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~-----------I~iwDlrt~~~~~~ 979 (1249)
-+. . |...+|.......-.......|.++. |+|. .++|+.|+.... +..|-+-.+..-..
T Consensus 125 ~vs-~----gt~q~y~e~hsfsf~~~yp~Gi~~~v-y~p~---h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 125 LVS-V----GTNQGYQENHSFSFSSHYPHGINSAV-YHPK---HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEE-c----ccCCcceeeEEEEecccCCCceeEEE-EcCC---CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 775 1 21122222111222222456788888 9998 567777765322 22222222211111
Q ss_pred eecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 980 LKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 980 l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
. |+ .-+...-......|..++-.++ ....+......|..|.. +|+|. .|++...
T Consensus 196 ~--------v~----~~~~~~~~~~~~~~~~~~~~~~----~fs~~~~~~d~i~kmSl-SPdg~---------~La~ih~ 249 (282)
T PF15492_consen 196 Q--------VT----SSEDDITASSKRRGLLRIPSFK----FFSRQGQEQDGIFKMSL-SPDGS---------LLACIHF 249 (282)
T ss_pred E--------cc----ccCccccccccccceeecccee----eeeccccCCCceEEEEE-CCCCC---------EEEEEEc
Confidence 0 00 0011111111112222222111 11112234567999999 99999 9999999
Q ss_pred CCeEEEEECCCCceeEEEec
Q 000861 1060 CNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1060 Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
+|+|.+|++.+-+.......
T Consensus 250 sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 250 SGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCeEEEEecCcchhhcccch
Confidence 99999999998877666653
No 315
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.13 E-value=4e-05 Score=94.27 Aligned_cols=342 Identities=16% Similarity=0.162 Sum_probs=221.1
Q ss_pred HhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHHHHHHHHH
Q 000861 141 ISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRRAAILLLK 220 (1249)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~ 220 (1249)
+|+.|..++.+-+. ++.+.|-.+.+..++.+ -..-+..++..++.| ..+.+|.-||..+.
T Consensus 43 lf~~L~~~~~e~v~-~~~~iL~~~l~~~~~~~------------------l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~ 102 (503)
T PF10508_consen 43 LFDCLNTSNREQVE-LICDILKRLLSALSPDS------------------LLPQYQPFLQRGLTH-PSPKVRRLALKQLG 102 (503)
T ss_pred HHHHHhhcChHHHH-HHHHHHHHHHhccCHHH------------------HHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 88888877666663 44566666666552222 244577888899999 88999999999888
Q ss_pred HHhhcCChH---HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHH
Q 000861 221 SSSLFIDDE---DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRI 297 (1249)
Q Consensus 221 ~l~~~~~de---~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~ 297 (1249)
.++..-+.- ..-..++|.++.++.|++.+|...|++.|..+.+.- +.-..+|+..+++.|..+...++..||+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~----~~~~~l~~~~~~~~L~~l~~~~~~~vR~ 178 (503)
T PF10508_consen 103 RIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP----EGLEQLFDSNLLSKLKSLMSQSSDIVRC 178 (503)
T ss_pred HHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc----hhHHHHhCcchHHHHHHHHhccCHHHHH
Confidence 876544321 123568999999999999999999999999988742 2234477888899999998887888998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCH
Q 000861 298 CYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTP 377 (1249)
Q Consensus 298 ~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~ 377 (1249)
-+-+.+..++.....-.+... ...+++.+...| ++++.
T Consensus 179 Rv~el~v~i~~~S~~~~~~~~----------------------------------------~sgll~~ll~eL--~~dDi 216 (503)
T PF10508_consen 179 RVYELLVEIASHSPEAAEAVV----------------------------------------NSGLLDLLLKEL--DSDDI 216 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHH----------------------------------------hccHHHHHHHHh--cCccH
Confidence 888888777655442222211 023556666666 35788
Q ss_pred HHHHHHHHhchhhhhhc-Ccc-ccchhhhhhHhhhhcCC--CHHHHHHHH----hhhhhhhcccChhhH-H--HhHHHHH
Q 000861 378 SIRRALLQDIGNLCSFF-GQR-QSNDFLLPILPAFLNDR--DEQLRAVFY----GQIVYVCFFVGERSV-E--EYLLPYI 446 (1249)
Q Consensus 378 ~Vr~all~~i~~l~~f~-G~~-~~~d~lLp~l~t~lnD~--~w~lR~a~~----~~i~~la~~lG~~~~-~--~~llPll 446 (1249)
-||.+.++=+..|+..= |.+ ....-+++.|..++++. |++++.-++ .....+|.. .+..+ + ..++..+
T Consensus 217 Lvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l 295 (503)
T PF10508_consen 217 LVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERL 295 (503)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHH
Confidence 99999999998888721 222 23345788888887764 443333211 112223332 22222 1 3355566
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHhc--C--CC---chHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceee
Q 000861 447 EQALSDATEAVIVNALDCLAILCKS--G--YL---RKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYV 519 (1249)
Q Consensus 447 ~q~L~D~~e~V~~~~l~~l~~l~~~--g--l~---~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~ 519 (1249)
.+.+...+...+..|+..|..++.. | ++ ....+..++..+.........=+|..+++.+..+-..-.. .--.
T Consensus 296 ~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~-~~~~ 374 (503)
T PF10508_consen 296 FSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD-RQDN 374 (503)
T ss_pred HHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC-CchH
Confidence 7788889999999999999998865 3 12 1224456677777777777778999999999888543221 1111
Q ss_pred EeeeccchhhhcCCCCcCCHHHHHhccCCCCc
Q 000861 520 FLAPVIRPFLRRQPASLASVKALLSCLKPPVS 551 (1249)
Q Consensus 520 ~l~P~l~~~l~~~v~~i~~~~~ll~~l~~Pls 551 (1249)
.++-+.+.|+..-=..- ....+++.+|+|.+
T Consensus 375 ~i~~~~~~w~~~~~~~~-~~~~l~~~~~qPF~ 405 (503)
T PF10508_consen 375 DILSITESWYESLSGSP-LSNLLMSLLKQPFP 405 (503)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHhcCCch
Confidence 12223333332211110 11177888888866
No 316
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.12 E-value=5.2e-05 Score=92.63 Aligned_cols=395 Identities=18% Similarity=0.206 Sum_probs=261.0
Q ss_pred CCCCCCCCCCCccccccccccccccchhhHHHhHhh-------hhcCCcccccccccccchhhhccccCCCCCC----CC
Q 000861 110 VKPMPEDVPNSTFSQDLRNSSVESSGELLQSISDAF-------RKNGHPFLKKITMNNLSSLMSEYDSQSDTFG----MP 178 (1249)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 178 (1249)
++=-|||||++-+..+|... .+.+..+++++ -++.-..||....+..+++..---.-.+.+. |.
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e 418 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSR-----LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAME 418 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhh
Confidence 44459999999888887621 23333444444 4566677888888888777654411111110 00
Q ss_pred CCCCCCC-CCCcccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCC--CChhHHHH
Q 000861 179 FLPLPED-SMKCEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSD--PAAIVRCA 253 (1249)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D--~~~~VR~~ 253 (1249)
-=.+|++ ..-.+....|+..|---+|. ++..+|..|..+|.++...+.+- .-+.-++|-+..-|.| ..+..+..
T Consensus 419 ~~g~~s~~~~L~~~~~~iVkai~~qlr~-ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~ 497 (1233)
T KOG1824|consen 419 QGGTPSDLSMLSDQVPLIVKAIQKQLRE-KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKID 497 (1233)
T ss_pred ccCCccchHHHHhhhHHHHHHHHHHHhh-ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHH
Confidence 0000000 01123334577777777887 89999999999999999888764 4567899999999999 46788888
Q ss_pred HHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccCCC
Q 000861 254 ALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAY-GFLVHSIRLSEAGVLDKLSAP 332 (1249)
Q Consensus 254 A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~-rf~~~~~~~~~~~~~~~~~~~ 332 (1249)
|+--+..++.... +..|..| ++.| .+.|-.++++...+++.-|. --+++.+.++.-. +
T Consensus 498 ~L~fl~~~L~s~~------p~~fhp~----~~~L----s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~-------~ 556 (1233)
T KOG1824|consen 498 ALVFLYSALISHP------PEVFHPH----LSAL----SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQ-------P 556 (1233)
T ss_pred HHHHHHHHHhcCC------hhhcccc----hhhh----hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccC-------C
Confidence 8888877775542 2244433 3332 34666777888877764443 3344555443200 0
Q ss_pred CCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccch--hhhhhHhhh
Q 000861 333 HKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSND--FLLPILPAF 410 (1249)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d--~lLp~l~t~ 410 (1249)
. ..++. ......+.....+.|+.+|.+.+||.+++.-++.+...||-..-++ ..||.|..=
T Consensus 557 ~-------------~~~d~----~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eR 619 (1233)
T KOG1824|consen 557 P-------------SSFDA----SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLER 619 (1233)
T ss_pred C-------------ccCCC----ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0 00111 1112455566667776689999999999999999888888433332 234444433
Q ss_pred hcCCCHHHHHHHHhhhhhhhcc---cChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Q 000861 411 LNDRDEQLRAVFYGQIVYVCFF---VGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS--GYLRKRILLEMIER 485 (1249)
Q Consensus 411 lnD~~w~lR~a~~~~i~~la~~---lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--gl~~~~~~~~l~~~ 485 (1249)
+. +..-|.+-+.+...||.- +.....-..++|-+.+.|.-..-..+.+.+..+..|++. +.+.+..+-.++..
T Consensus 620 l~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~e 697 (1233)
T KOG1824|consen 620 LG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVE 697 (1233)
T ss_pred Hh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33 777888888888887743 333334467999999999999999999999999999997 77788877888899
Q ss_pred hcccccCCCHHHHHHHHHHHHHHhhcCCccc--eeeEeeeccchhhhcC---------------------CCCcCCHHHH
Q 000861 486 AFPLLCYPSQWVRRSVVTFIAASSESLGAVD--SYVFLAPVIRPFLRRQ---------------------PASLASVKAL 542 (1249)
Q Consensus 486 ~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d--~~~~l~P~l~~~l~~~---------------------v~~i~~~~~l 542 (1249)
+.+|+......+-+-++.++..++..-+... +...+++-+..+++.+ -+++ .-..+
T Consensus 698 l~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l-~y~~l 776 (1233)
T KOG1824|consen 698 LPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL-DYISL 776 (1233)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc-cHHHH
Confidence 9999999999999999999999987765443 3334555555555554 3445 36777
Q ss_pred HhccCCCCc
Q 000861 543 LSCLKPPVS 551 (1249)
Q Consensus 543 l~~l~~Pls 551 (1249)
++++..|+.
T Consensus 777 ~s~lt~PV~ 785 (1233)
T KOG1824|consen 777 LSLLTAPVY 785 (1233)
T ss_pred HHHHcCCcc
Confidence 888888864
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=1.9e-06 Score=103.13 Aligned_cols=204 Identities=12% Similarity=0.152 Sum_probs=143.0
Q ss_pred cEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCC-
Q 000861 826 ILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACD- 904 (1249)
Q Consensus 826 ~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~D- 904 (1249)
+...+|+.|+...+|++|+-+.++++.|+..|.|+++++.+|.. ...+.+|.+.|+.+.-+.+|..+++.+.-
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------cccccccccccccccccCCcceeeeecccc
Confidence 45667899999999999999999999999999999999999874 45788999999999999999877665432
Q ss_pred -CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec-
Q 000861 905 -GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA- 982 (1249)
Q Consensus 905 -g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~- 982 (1249)
--..+|+.... +. ..+.+. ...++. |+.. ...-+.|+......+||+.|+....++-.
T Consensus 1166 ~PlsaLW~~~s~----~~--------~~Hsf~----ed~~vk-Fsn~---~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1166 SPLSALWDASST----GG--------PRHSFD----EDKAVK-FSNS---LQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred CchHHHhccccc----cC--------cccccc----ccceee-hhhh---HHHHHhcccccceEEEecccCcHHHHhcCc
Confidence 24678998721 11 122222 233555 7776 33455666667899999999988766421
Q ss_pred -CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCC
Q 000861 983 -IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCN 1061 (1249)
Q Consensus 983 -~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg 1061 (1249)
.+....-.+..|+|+...++ .||. +||+|....++.|.. ....+ .=.| ||.|. .++.-+
T Consensus 1226 ~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~-ft~~~-~G~F-HP~g~---------eVIINS--- 1285 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQ-FTDYG-GGGF-HPSGN---------EVIINS--- 1285 (1516)
T ss_pred chhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhh-heecc-cccc-cCCCc---------eEEeec---
Confidence 11122236778999887765 4554 899998887777642 11111 1235 89987 666655
Q ss_pred eEEEEECCCCceeEEE
Q 000861 1062 EVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1062 ~I~vWDl~tg~~~~~l 1077 (1249)
.|||+++.+.+...
T Consensus 1286 --EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSV 1299 (1516)
T ss_pred --hhhhhHHHHHHhcC
Confidence 48999987655443
No 318
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.11 E-value=0.00025 Score=75.59 Aligned_cols=206 Identities=10% Similarity=0.014 Sum_probs=128.5
Q ss_pred CCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 894 HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 894 dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
...+|+.|+..|...+|.... .+. .....+.+...|+-+..+.-. .--+..++.|.++++.++..
T Consensus 83 kc~~la~gG~~g~fd~~~~~t-----n~~-------h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNT-----NDG-------HLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred cccEEEeccccceeeeecccC-----ccc-------ceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEec
Confidence 445889999999999998871 111 122222233322222111111 12466677788888888776
Q ss_pred CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCC-Cc-ccccccCCCCCeeEEEEEcCCCCCcccCCCC
Q 000861 974 NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFL-VP-VNSWQYSQVCPIEKMCLFVPPPNAAVSTTAR 1051 (1249)
Q Consensus 974 ~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~-~~-l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~ 1051 (1249)
+......-. ..-.+.++.++++++|+++.+....|..|.+... +- ++....+....--+..| +....
T Consensus 148 ~s~~~~~h~--~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~-s~~~~-------- 216 (344)
T KOG4532|consen 148 DSNKFAVHN--QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF-SENDL-------- 216 (344)
T ss_pred Ccccceeec--cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee-ccCcc--------
Confidence 554433322 1123889999999999999999999999988532 22 22122222223344556 54444
Q ss_pred CEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCe
Q 000861 1052 PLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGI 1131 (1249)
Q Consensus 1052 ~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V 1131 (1249)
.++++..||.+.|||++........... ..+.|.+.+
T Consensus 217 -~FAv~~Qdg~~~I~DVR~~~tpm~~~ss------------------------------------------trp~hnGa~ 253 (344)
T KOG4532|consen 217 -QFAVVFQDGTCAIYDVRNMATPMAEISS------------------------------------------TRPHHNGAF 253 (344)
T ss_pred -eEEEEecCCcEEEEEecccccchhhhcc------------------------------------------cCCCCCCce
Confidence 7999999999999999865432222210 112355689
Q ss_pred EEEeecCCC---eEEEEeCCCcEEEEeCCCCCccEEEeCC
Q 000861 1132 RSLLPLPGG---DLLTGGTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1132 ~sl~~spdg---~L~tgs~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
+.+.|++.| .|+-.-.=+.+.+-|+.++.....+.-+
T Consensus 254 R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 254 RVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 999999877 4554445678999999999887776543
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.10 E-value=0.00099 Score=80.00 Aligned_cols=234 Identities=13% Similarity=0.079 Sum_probs=134.3
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcc-ccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV-EKY 925 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~-~~~ 925 (1249)
+..++.++.+|.+..+|..+++.....+ ... .+.+--.. .+..++.++.+|.+..+|.. +|+. -++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~------~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~-----tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTK------VAG-EALSRPVV-SDGLVLVHTSNGMLQALNES-----DGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCccccc------CCC-ceecCCEE-ECCEEEEECCCCEEEEEEcc-----CCCEeeee
Confidence 4456667889999999999988533222 111 12111111 23467777888999999987 3443 111
Q ss_pred cCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCC-----ceEEEEEcC--CC
Q 000861 926 SGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG-----YVSSLVTGP--CG 998 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~-----~I~sl~~sp--dg 998 (1249)
..............++ .. +..++.++.+|.+..+|..+|+..|........+ ....+..+| .+
T Consensus 187 ~~~~~~~~~~~~~sP~-----v~-----~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 187 NLDVPSLTLRGESAPA-----TA-----FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred cCCCCcccccCCCCCE-----EE-----CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC
Confidence 1000000000001111 11 1267778889999999999999988764321110 011111222 24
Q ss_pred CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 999 NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 999 ~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
..+++++.+|.+..+|..+|+.+.....+ ....+.. .+. .+++++.+|.+..+|..+|+.+-...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~---~~~---------~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV---DGG---------RIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE---ECC---------EEEEEcCCCeEEEEECCCCcEEEccc
Confidence 56777888999999999999876543321 1112222 222 68889999999999999986432211
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCC
Q 000861 1079 TANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCS 1158 (1249)
Q Consensus 1079 ~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~ 1158 (1249)
..... ...+... -+|.++.++.||.|...|..+
T Consensus 322 ~~~~~----------------------------------------------~~~sp~v-~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 322 DLLHR----------------------------------------------LLTAPVL-YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred ccCCC----------------------------------------------cccCCEE-ECCEEEEEeCCCEEEEEECCC
Confidence 00000 0001111 256788899999999999998
Q ss_pred CCccEEE
Q 000861 1159 PGRSYCI 1165 (1249)
Q Consensus 1159 ~~~~~~l 1165 (1249)
++.....
T Consensus 355 G~~~~~~ 361 (394)
T PRK11138 355 GRFVAQQ 361 (394)
T ss_pred CCEEEEE
Confidence 8764433
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.0021 Score=71.98 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=133.8
Q ss_pred eeEEEEcC-CCCEEEEEECCCc-EEEEECCCCcccccc--ceeeEeeccCCceEEEEEecCCCEEEEEeC-----CCeEE
Q 000861 838 VNEIAISH-DHSFFVSASDDST-VKVWDSRKLEKDISF--RSRLTYHLEGSRALCTMMLRHSAQVVVGAC-----DGIIH 908 (1249)
Q Consensus 838 V~~la~sp-dg~~laTgs~Dgt-VkIWD~~~~~~~~~~--~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-----Dg~I~ 908 (1249)
...++.+| +...++.+-.-|+ ..+||+.+++..... ..-..|.+| -+|++||++|++.-. .|.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence 45678888 4556777777765 678999988742211 111233344 579999999998744 48999
Q ss_pred EEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE------------------ECCCeEEEEE
Q 000861 909 MFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS------------------TQNCGIHLWD 970 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg------------------s~dg~I~iwD 970 (1249)
|||... +...+..+..+.-....+. +.|| ++.|+.+ +.+.++...|
T Consensus 81 Vyd~~~------------~~~ri~E~~s~GIGPHel~-l~pD---G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 81 VYDAAR------------GYRRIGEFPSHGIGPHELL-LMPD---GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred EEECcC------------CcEEEeEecCCCcChhhEE-EcCC---CCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence 999981 1223445555544455565 6777 4455544 2345677788
Q ss_pred cCCCccceeeec--CCCCCceEEEEEcCCCCEEEEEecCCc-------EEEEeCCCCCccccccc------CCCCCeeEE
Q 000861 971 TRSNSNTWTLKA--IPEEGYVSSLVTGPCGNWFVSGSSRGV-------LTLWDLRFLVPVNSWQY------SQVCPIEKM 1035 (1249)
Q Consensus 971 lrt~~~~~~l~~--~~h~~~I~sl~~spdg~~L~sgs~dG~-------I~lWDlr~~~~l~s~~~------~~~~~I~~l 1035 (1249)
.++|+.+..... ..|.-.|+-++++++|..++..-..|- |-+++.. ..+..+.. .....|-+|
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEE
Confidence 889988777555 447788999999999976665544432 4444432 22222211 234678999
Q ss_pred EEEcCCCCCcccCCCCCEEEEEE-CCCeEEEEECCCCceeEEEe
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
++ ++++. ++++.+ ..|.+.+||..+++.+....
T Consensus 223 a~-~~~g~---------~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 223 AA-DRDGR---------LIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EE-eCCCC---------EEEEECCCCCEEEEEECCCCCEeeccc
Confidence 99 88887 555544 46789999999998765543
No 321
>PTZ00429 beta-adaptin; Provisional
Probab=98.05 E-value=0.00021 Score=90.52 Aligned_cols=302 Identities=18% Similarity=0.109 Sum_probs=192.5
Q ss_pred cccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccccc
Q 000861 189 CEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268 (1249)
Q Consensus 189 ~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~ 268 (1249)
.|-+++.++.+..-+.+ ..+..|-.|+.-+.. +......+.+++.+...+.|..|-||..|+-++.++...-.
T Consensus 100 pelalLaINtl~KDl~d-~Np~IRaLALRtLs~----Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTN-SSPVVRALAVRTMMC----IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred hHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 33356666666655555 556666666654433 45566778999999999999999999999999999876432
Q ss_pred CCCCCcchh-hchhhhccCCCCCCchhHHHHHHHHHHHHHHHH--------HHHHHHHHHhhh---cccccccCCCCCCC
Q 000861 269 PPSDAKIFP-EYILPMLSMLPDDPEESVRICYASNIAKLALTA--------YGFLVHSIRLSE---AGVLDKLSAPHKSP 336 (1249)
Q Consensus 269 ~~~~~~if~-eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a--------~rf~~~~~~~~~---~~~~~~~~~~~~~~ 336 (1249)
.+++ +-+++.|..+..|++..|.......|..+.+.. ..+..+...+.+ .++.--
T Consensus 173 -----elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~I-------- 239 (746)
T PTZ00429 173 -----QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYI-------- 239 (746)
T ss_pred -----ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHH--------
Confidence 2322 236788888899999888766655555554321 111111111110 000000
Q ss_pred CCCCcchhhhhccch--hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchh---hhhhHhhhh
Q 000861 337 SSSNETSVQLQRLNA--DVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDF---LLPILPAFL 411 (1249)
Q Consensus 337 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~---lLp~l~t~l 411 (1249)
-+-...+.. +++. ..++..+...| +..++.|-.+.++-+..+......+...+. |-+-+++++
T Consensus 240 ------L~lL~~y~P~~~~e~----~~il~~l~~~L--q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ 307 (746)
T PTZ00429 240 ------LELLAAQRPSDKESA----ETLLTRVLPRM--SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS 307 (746)
T ss_pred ------HHHHHhcCCCCcHHH----HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh
Confidence 000001110 1122 34555566666 457899999999887776655433322221 225566765
Q ss_pred cCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhccccc
Q 000861 412 NDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLC 491 (1249)
Q Consensus 412 nD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~ 491 (1249)
..+..+|...++.|-.++..- +..|..+ +-.+.-..+|+.+ |+...|+.|..|+.. ..+.+++.++..+..
T Consensus 308 -ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane-----~Nv~~IL~EL~eYa~ 378 (746)
T PTZ00429 308 -RRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTP-----SVAPEILKELAEYAS 378 (746)
T ss_pred -CCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCc-----ccHHHHHHHHHHHhh
Confidence 467889999999998877644 5556555 5556666899997 899999999998763 344467777778888
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCC
Q 000861 492 YPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQP 533 (1249)
Q Consensus 492 hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v 533 (1249)
+.+.=+|..++..|..+|..+... ....+..+..++...+
T Consensus 379 d~D~ef~r~aIrAIg~lA~k~~~~--a~~cV~~Ll~ll~~~~ 418 (746)
T PTZ00429 379 GVDMVFVVEVVRAIASLAIKVDSV--APDCANLLLQIVDRRP 418 (746)
T ss_pred cCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCc
Confidence 888899999999999999887543 3334455556665543
No 322
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=98.05 E-value=4.5e-05 Score=91.75 Aligned_cols=259 Identities=19% Similarity=0.156 Sum_probs=177.6
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhh
Q 000861 199 LCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPE 278 (1249)
Q Consensus 199 i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~e 278 (1249)
.+..+|- ++..-|.+.-..|..-.+.+..|..+.+++|.++..+.=.+ ||-.-|+-++++...+. ..-|..
T Consensus 259 fLeel~l-ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld---~~eyq~ 329 (690)
T KOG1243|consen 259 FLEELRL-KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLD---EEEYQV 329 (690)
T ss_pred HHHhccc-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhcc---cccccc
Confidence 3444554 88899999999999989999999999999999888765322 33333444444443332 112778
Q ss_pred chhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHH
Q 000861 279 YILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQL 358 (1249)
Q Consensus 279 yilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1249)
+|.|.|-+|..-++..||+.+-..|........ -+.+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt-------------------------------------------~~~~ 366 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT-------------------------------------------KQIL 366 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC-------------------------------------------HHhh
Confidence 888888888877777788877666655543221 0122
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhH
Q 000861 359 RKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSV 438 (1249)
Q Consensus 359 ~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~ 438 (1249)
.+.|+|.|...+ .|.++.+|..-+..|..|+..+|....|-.+|-||-.+-+|.+-.+|.-=--++..+++++-...=
T Consensus 367 ~d~I~phv~~G~--~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R 444 (690)
T KOG1243|consen 367 NDQIFPHVALGF--LDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR 444 (690)
T ss_pred cchhHHHHHhhc--ccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh
Confidence 257777777776 377788888888888888888888777777888888887888888887777777777777765543
Q ss_pred HHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcC
Q 000861 439 EEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 439 ~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l 512 (1249)
...|.--+..+|.|+..--|.+.+..|...++. +.....-..++|.+.|+..+|+.-+|-.+...|-..-..+
T Consensus 445 ~~vL~~aftralkdpf~paR~a~v~~l~at~~~-~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 445 KRVLASAFTRALKDPFVPARKAGVLALAATQEY-FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ccccchhhhhhhcCCCCCchhhhhHHHhhcccc-cchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 233333455578888888888887777776663 1122233357778888888888888877776665554433
No 323
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00079 Score=78.22 Aligned_cols=176 Identities=9% Similarity=0.079 Sum_probs=111.8
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC-----------CCe
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC-----------DGI 906 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~-----------Dg~ 906 (1249)
=+-+.|||.|.||+|--..| |.+|--.+-.. ..-..|.+ |.-+.|+|+.++|++-+. ...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-------~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR-------IQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH-------HHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCce
Confidence 35678999999999987655 78896554432 12234655 899999999999998653 257
Q ss_pred EEEEEccccccCCCccccccCccceeeecC--CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC
Q 000861 907 IHMFSVDHISRGLGNVEKYSGISDIKKKDT--KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP 984 (1249)
Q Consensus 907 I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~--h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~ 984 (1249)
++|||+. +|.+ .+.+.. ....+.-+..|+.| +++++.-+. ..|.||+..+...+-.- ..
T Consensus 284 l~IWDI~-----tG~l--------krsF~~~~~~~~~WP~frWS~D---dKy~Arm~~-~sisIyEtpsf~lld~K--sl 344 (698)
T KOG2314|consen 284 LIIWDIA-----TGLL--------KRSFPVIKSPYLKWPIFRWSHD---DKYFARMTG-NSISIYETPSFMLLDKK--SL 344 (698)
T ss_pred EEEEEcc-----ccch--------hcceeccCCCccccceEEeccC---CceeEEecc-ceEEEEecCceeeeccc--cc
Confidence 8999999 3443 222222 23345556668888 677777665 67999998765433221 12
Q ss_pred CCCceEEEEEcCCCCEEEEEecC-----CcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 985 EEGYVSSLVTGPCGNWFVSGSSR-----GVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 985 h~~~I~sl~~spdg~~L~sgs~d-----G~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
.-..|..+.|+|.++.|+.=+.. ..+.+-.+.+++.+++-.. +.-.=..+.| ..+|.
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhW-Qk~gd 406 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHW-QKSGD 406 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc-eeeeccEEEe-ccCCc
Confidence 35678999999998887753321 3466666666666655332 2222234455 44444
No 324
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.04 E-value=6.2e-05 Score=83.03 Aligned_cols=192 Identities=18% Similarity=0.136 Sum_probs=122.5
Q ss_pred HHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchh---hhccCCCCCCchhHHHHHHHHHHHHHH
Q 000861 232 LQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYIL---PMLSMLPDDPEESVRICYASNIAKLAL 308 (1249)
Q Consensus 232 l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyil---P~l~~l~~D~~~~VR~~~A~~l~~LA~ 308 (1249)
++.+++.|-.--.+.+.+.|..|+..|-.++..- .+..+...|.+++- +.+...++|....|-.....++..||.
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~ 82 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLAR 82 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455555555457789999999999999888754 22233334444433 333344444433333344455555555
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhch
Q 000861 309 TAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 388 (1249)
Q Consensus 309 ~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~ 388 (1249)
..+. .++...+.++|.+...+. |....||.++..-|.
T Consensus 83 ~l~~-----------------------------------------~~~~~~~~~l~~Ll~~~~--~~~~~i~~~a~~~L~ 119 (228)
T PF12348_consen 83 QLGS-----------------------------------------HFEPYADILLPPLLKKLG--DSKKFIREAANNALD 119 (228)
T ss_dssp HHGG-----------------------------------------GGHHHHHHHHHHHHHGGG-----HHHHHHHHHHHH
T ss_pred HHhH-----------------------------------------hHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHH
Confidence 4431 123334678888888884 677899999999899
Q ss_pred hhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccC--hhhH-----HHhHHHHHHHHccCCcHHHHHHH
Q 000861 389 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVG--ERSV-----EEYLLPYIEQALSDATEAVIVNA 461 (1249)
Q Consensus 389 ~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG--~~~~-----~~~llPll~q~L~D~~e~V~~~~ 461 (1249)
.++...+ -....+++.+...++++++.+|...++.+..+....| ...+ -+.|.|.+..+|.|+...||..+
T Consensus 120 ~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 120 AIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp HHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 9998776 1234458999999999999999999999999988888 2221 25699999999999999999999
Q ss_pred HHHHHHHHh
Q 000861 462 LDCLAILCK 470 (1249)
Q Consensus 462 l~~l~~l~~ 470 (1249)
-+++..|.+
T Consensus 198 r~~~~~l~~ 206 (228)
T PF12348_consen 198 RECLWALYS 206 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999877
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=1.5e-05 Score=87.28 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=106.4
Q ss_pred EEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc--
Q 000861 899 VVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-- 976 (1249)
Q Consensus 899 asgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-- 976 (1249)
++.+.+-.|-+-+++ +|.. ..+. ..+.|.++. |... +++++.|..+|.|..+|+|.+..
T Consensus 228 fs~G~sqqv~L~nve-----tg~~---------qsf~-sksDVfAlQ-f~~s---~nLv~~GcRngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVE-----TGHQ---------QSFQ-SKSDVFALQ-FAGS---DNLVFNGCRNGEIFVIDLRCRNQGN 288 (425)
T ss_pred ecccccceeEEEEee-----cccc---------cccc-cchhHHHHH-hccc---CCeeEecccCCcEEEEEeeecccCC
Confidence 444556667777887 1211 1112 456677887 7776 56999999999999999997621
Q ss_pred ceeeecCCCCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCc---ccccccCCCCCeeEEEEEcCCCCCcccCCCCC
Q 000861 977 TWTLKAIPEEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVP---VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARP 1052 (1249)
Q Consensus 977 ~~~l~~~~h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~---l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~ 1052 (1249)
.|....--|.+.|+++..-. ++.+|++.+.+|.|++||+|.-++ +..+. +|.. ..++ .|-+ ...+..
T Consensus 289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN---~~a~-l~~~----v~~eeg 359 (425)
T KOG2695|consen 289 GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVN---LSAY-LPAH----VKEEEG 359 (425)
T ss_pred CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccc---cccc-cccc----cccccc
Confidence 22222223788999998777 788999999999999999998777 55544 3433 3232 2211 112234
Q ss_pred EEEEEECCCeEEEEECCCCceeEEEeccc
Q 000861 1053 LIYVAAGCNEVSLWNAENGSCHQVLRTAN 1081 (1249)
Q Consensus 1053 ~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~ 1081 (1249)
.|++++.|-..++|.+..|+...++....
T Consensus 360 ~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEccCeeEEEEEecccCceeeccCCCC
Confidence 78888888899999999999887776433
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.98 E-value=0.0015 Score=72.18 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=125.2
Q ss_pred CccCC-CCcEEEEeccccCceeEEE--EcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC
Q 000861 819 SGWRP-RGILVAHLQEHCSAVNEIA--ISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 819 ~~W~~-~G~lv~~L~~H~~~V~~la--~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg 895 (1249)
..|++ +|+.+-...- ...+.... ..+++..+++++.++.+..||..+++.. ..+... +.+...- ...+
T Consensus 6 ~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~------W~~~~~-~~~~~~~-~~~~ 76 (238)
T PF13360_consen 6 SALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVL------WRFDLP-GPISGAP-VVDG 76 (238)
T ss_dssp EEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEE------EEEECS-SCGGSGE-EEET
T ss_pred EEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEE------EEeecc-cccccee-eecc
Confidence 45664 7777766642 11122222 2335567777789999999999998742 233321 1111111 2245
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceee-ecCC---CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEc
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKK-KDTK---EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDT 971 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~-l~~h---~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDl 971 (1249)
..+++++.++.+..+|.. .|++ +.. .... ........ .... +..+++++.++.|..+|+
T Consensus 77 ~~v~v~~~~~~l~~~d~~-----tG~~--------~W~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAK-----TGKV--------LWSIYLTSSPPAGVRSSSS-PAVD---GDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp TEEEEEETTSEEEEEETT-----TSCE--------EEEEEE-SSCTCSTB--SE-EEEE---TTEEEEEETCSEEEEEET
T ss_pred cccccccceeeeEecccC-----Ccce--------eeeeccccccccccccccC-ceEe---cCEEEEEeccCcEEEEec
Confidence 567777788899999976 3443 111 0100 01111111 1112 348888888999999999
Q ss_pred CCCccceeeecCCCCC--------ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 972 RSNSNTWTLKAIPEEG--------YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 972 rt~~~~~~l~~~~h~~--------~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
++|+.++......... .+.+-.+..++ .++.++.+|.+..+|+.+++.+ |... ...+..+. ...+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~--w~~~-~~~~~~~~--~~~~~ 213 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL--WSKP-ISGIYSLP--SVDGG 213 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE--EEEC-SS-ECECE--ECCCT
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE--EEec-CCCccCCc--eeeCC
Confidence 9999999886632121 11222222344 7777777775444499999866 3322 22233322 34444
Q ss_pred CcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 1044 AAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1044 ~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
.+++++.++.+..||+.+|+..-
T Consensus 214 ---------~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 214 ---------TLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ---------EEEEEETTTEEEEEETTTTEEEE
T ss_pred ---------EEEEEeCCCEEEEEECCCCCEEe
Confidence 78888899999999999998653
No 327
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.008 Score=67.08 Aligned_cols=198 Identities=13% Similarity=0.111 Sum_probs=124.6
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEe-cCCCEEEEEeCCCeEEEEEcccccc
Q 000861 840 EIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML-RHSAQVVVGACDGIIHMFSVDHISR 917 (1249)
Q Consensus 840 ~la~sp-dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fs-pdg~~Lasgs~Dg~I~vwdv~~~~~ 917 (1249)
+++|.+ ++.++++--..+.|..|+..++.. ..+.... ...+++. ++ ..++.+..++ +.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~---- 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------EVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPD---- 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------EEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETT----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------EEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecC----
Confidence 578888 777888887889999999988752 1222222 6677787 56 4566666555 5566876
Q ss_pred CCCccccccCccceeeec--C-CCCcEEEEEEecCCCCCccEEEEEECC--------CeEEEEEcCCCccceeeecCCCC
Q 000861 918 GLGNVEKYSGISDIKKKD--T-KEGAIVTLVNYNTDNCASHMFMYSTQN--------CGIHLWDTRSNSNTWTLKAIPEE 986 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~--~-h~~~V~~l~~fs~d~~~g~~L~sgs~d--------g~I~iwDlrt~~~~~~l~~~~h~ 986 (1249)
.+++ ..+.... . ....+..++ +.++ |++.++.... |.|..++.. ++...... .-
T Consensus 69 -~g~~------~~~~~~~~~~~~~~~~ND~~-vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~ 133 (246)
T PF08450_consen 69 -TGKV------TVLADLPDGGVPFNRPNDVA-VDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GL 133 (246)
T ss_dssp -TTEE------EEEEEEETTCSCTEEEEEEE-E-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EE
T ss_pred -CCcE------EEEeeccCCCcccCCCceEE-EcCC---CCEEEEecCCCccccccccceEEECCC-CeEEEEec---Cc
Confidence 2332 1122221 1 234577787 8998 6666655443 568888887 54333332 24
Q ss_pred CceEEEEEcCCCCEEE-EEecCCcEEEEeCCCCCc-c---cccccCCC--CCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 987 GYVSSLVTGPCGNWFV-SGSSRGVLTLWDLRFLVP-V---NSWQYSQV--CPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 987 ~~I~sl~~spdg~~L~-sgs~dG~I~lWDlr~~~~-l---~s~~~~~~--~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
.....++|+|+++.|+ +-+..+.|..+|+..... + ..+..... +....+++ ..+|+ +.++...
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v-D~~G~---------l~va~~~ 203 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV-DSDGN---------LWVADWG 203 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE-BTTS----------EEEEEET
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE-cCCCC---------EEEEEcC
Confidence 5678999999998776 456678899998853222 1 11211111 23678888 88887 5555557
Q ss_pred CCeEEEEECCCCceeEEEe
Q 000861 1060 CNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1060 Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.+.|.++|.+ |+....+.
T Consensus 204 ~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 204 GGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp TTEEEEEETT-SCEEEEEE
T ss_pred CCEEEEECCC-ccEEEEEc
Confidence 8899999987 88877776
No 328
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.94 E-value=0.00029 Score=95.81 Aligned_cols=283 Identities=11% Similarity=0.033 Sum_probs=197.0
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHH--HH--HhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDED--RL--QRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPP 270 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~--~l--~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~ 270 (1249)
.++.+...+++ .....|..|+-.|..++.. +++. .. .-.+|.++.+|++..+++|..|+.+|..++..-+
T Consensus 489 aIP~LV~LL~s-~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d---- 562 (2102)
T PLN03200 489 GIPPLVQLLET-GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD---- 562 (2102)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----
Confidence 56667777776 6788899999988888874 2221 12 2468999999999999999999999998876432
Q ss_pred CCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccc
Q 000861 271 SDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLN 350 (1249)
Q Consensus 271 ~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1249)
... | |.+..|...++..++......|+.+...+...-...+.
T Consensus 563 --~~~----I-~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------------------------------- 604 (2102)
T PLN03200 563 --AAT----I-SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG------------------------------- 604 (2102)
T ss_pred --hhH----H-HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-------------------------------
Confidence 111 2 33333332233344444455555554433311000000
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccc-----cchhhhhhHhhhhcCCCHHHHHHHHhh
Q 000861 351 ADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQ-----SNDFLLPILPAFLNDRDEQLRAVFYGQ 425 (1249)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~-----~~d~lLp~l~t~lnD~~w~lR~a~~~~ 425 (1249)
......++.+.+||. ..+..+|.....-|..+|. |+.. ..+-.+|-++.+|...+..+|..-...
T Consensus 605 ------~~~~ggL~~Lv~LL~--sgs~~ikk~Aa~iLsnL~a--~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~A 674 (2102)
T PLN03200 605 ------SAANDALRTLIQLLS--SSKEETQEKAASVLADIFS--SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARA 674 (2102)
T ss_pred ------hhccccHHHHHHHHc--CCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence 000245677888884 5678999998888888876 4332 344578999999999999999999999
Q ss_pred hhhhhcccChh----hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHhcccccCCCHHHHHH
Q 000861 426 IVYVCFFVGER----SVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRI-LLEMIERAFPLLCYPSQWVRRS 500 (1249)
Q Consensus 426 i~~la~~lG~~----~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~-~~~l~~~~~~ll~hpn~wiR~~ 500 (1249)
+..++.-.-.. ..++-.+|.+.++|++....|+..++..|..+++.+--.... -.+.++....++..-+.+.|+.
T Consensus 675 L~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~ 754 (2102)
T PLN03200 675 LAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRN 754 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHH
Confidence 99888522211 234557888999999999999999999999999975433321 2356788888999999999999
Q ss_pred HHHHHHHHhhcCCccc------eeeEeeeccchhhhc
Q 000861 501 VVTFIAASSESLGAVD------SYVFLAPVIRPFLRR 531 (1249)
Q Consensus 501 ~~~~i~~~a~~l~~~d------~~~~l~P~l~~~l~~ 531 (1249)
+...+..+++..+.+| ..|..++-+..+|+-
T Consensus 755 Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 755 AARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 9999999999999888 456666666666654
No 329
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.93 E-value=0.00014 Score=78.50 Aligned_cols=228 Identities=13% Similarity=0.221 Sum_probs=141.9
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccC------------CceEEEEEecCC--CEEE
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEG------------SRALCTMMLRHS--AQVV 899 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~------------~~V~sl~fspdg--~~La 899 (1249)
..+.|+++.|...|.|++||...|.|.++.-.... ...++-...+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45689999999999999999999999999766543 11111112234443 368889998755 3566
Q ss_pred EEeCCCeEEEEEcccccc---------------CCCcc--------ccccC------ccceeee-cCCCCcEEEEEEecC
Q 000861 900 VGACDGIIHMFSVDHISR---------------GLGNV--------EKYSG------ISDIKKK-DTKEGAIVTLVNYNT 949 (1249)
Q Consensus 900 sgs~Dg~I~vwdv~~~~~---------------~~g~~--------~~~~~------~~~i~~l-~~h~~~V~~l~~fs~ 949 (1249)
..+.|.+|++|.+....- ..|.+ .+.+. ..+.+.+ ..|...+.++. |+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS-~Ns 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS-FNS 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee-ecC
Confidence 778899999999852100 00111 00000 0122222 44666677787 887
Q ss_pred CCCCccEEEEEECCCeEEEEEcCCCccceee-ecCCCC-----CceEEEEEcCCC-CEEEEEecCCcEEEEeCCCCCcc-
Q 000861 950 DNCASHMFMYSTQNCGIHLWDTRSNSNTWTL-KAIPEE-----GYVSSLVTGPCG-NWFVSGSSRGVLTLWDLRFLVPV- 1021 (1249)
Q Consensus 950 d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l-~~~~h~-----~~I~sl~~spdg-~~L~sgs~dG~I~lWDlr~~~~l- 1021 (1249)
| ...+++ ..|-.|.+|++.-......+ ...+|. ..|++..|+|.. +.+...++.|.|++-|+|.....
T Consensus 183 D---~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 D---KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred c---hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 7 445554 45788999998754433332 223332 358888999954 67777888999999999843211
Q ss_pred -----cccc---------cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCC-ceeEEEe
Q 000861 1022 -----NSWQ---------YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENG-SCHQVLR 1078 (1249)
Q Consensus 1022 -----~s~~---------~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg-~~~~~l~ 1078 (1249)
.... .+....|..+.| +++|+ +++ +-.-.++++||+... .++.++.
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kF-s~ngr---------yIl-sRdyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKF-SDNGR---------YIL-SRDYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEE-cCCCc---------EEE-EeccceEEEEecccccCCceeec
Confidence 1110 112346888899 99987 443 334468999999753 4555554
No 330
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00042 Score=83.66 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=180.2
Q ss_pred CcccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccc
Q 000861 188 KCEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRN 267 (1249)
Q Consensus 188 ~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~ 267 (1249)
+.+.+..+.+-+..++-. +..++|.-.--.|+..|+.-.|...| -+-+|..-|+|+.+.+|+.|++.|+.+=--+
T Consensus 65 ~G~dvS~~Fp~VVKNVas-kn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsIRvp~-- 139 (968)
T KOG1060|consen 65 KGKDVSLLFPAVVKNVAS-KNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRVLSSIRVPM-- 139 (968)
T ss_pred cCCcHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhcchhh--
Confidence 334466666777777777 88888887777788888887777654 3678999999999999999999998764221
Q ss_pred cCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHH---------------------------HHHHHHHH---
Q 000861 268 FPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALT---------------------------AYGFLVHS--- 317 (1249)
Q Consensus 268 ~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~---------------------------a~rf~~~~--- 317 (1249)
| .--+|=.++.++.|++++||-+.|..|++|... +..|-+.+
T Consensus 140 -------I-aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 140 -------I-APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred -------H-HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 1 112555678999999999999999999998221 11222211
Q ss_pred ------------HHhhh---cc--------------cccccCCCCCCCCCCCcc-----hhhhhc--cchhHHHHHHH--
Q 000861 318 ------------IRLSE---AG--------------VLDKLSAPHKSPSSSNET-----SVQLQR--LNADVQLSQLR-- 359 (1249)
Q Consensus 318 ------------~~~~~---~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~-- 359 (1249)
+-+.+ .| .+..-....++.+.++.. .....+ +..|.++..|.
T Consensus 212 ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 212 LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 11111 11 010000000000000000 000000 00011111111
Q ss_pred -----------------------------HHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhh------------hcCcc-
Q 000861 360 -----------------------------KSIAEVVQELVMGPKQTPSIRRALLQDIGNLCS------------FFGQR- 397 (1249)
Q Consensus 360 -----------------------------~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~------------f~G~~- 397 (1249)
..|.+.++.|| -+.++||--+|++|..+|. ||=+.
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLL---rs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLL---RSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHH---hcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 22444555566 3678899999998886653 22211
Q ss_pred -------------------ccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHH
Q 000861 398 -------------------QSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVI 458 (1249)
Q Consensus 398 -------------------~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~ 458 (1249)
.....||+-+.+|.++.|.++=++-+++|...|.-+|.-. ...|--+++.|+-.++.|+
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~--~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT--DTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh--hHHHHHHHHHHhcccchhH
Confidence 1224578999999999999999999999999999999654 6788899999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhcccc
Q 000861 459 VNALDCLAILCKSGYLRKRILLEMIERAFPLL 490 (1249)
Q Consensus 459 ~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll 490 (1249)
..+...++.|++..- ....+++...+.++
T Consensus 447 ~eaV~vIk~Llq~~p---~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDP---AEHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHHHHhhCh---HHHHHHHHHHHHHh
Confidence 999999999998532 33344555554444
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00019 Score=86.89 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=127.8
Q ss_pred cCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccc
Q 000861 835 CSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDH 914 (1249)
Q Consensus 835 ~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~ 914 (1249)
.+.+.|++++ +++|+-|+.+|.|++.+....- .+...|+.. ..+|.++++|+.||+|.|-.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~- 101 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLF- 101 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--------ccccccccc------ccCCceEEEecCCCcEEEeecc-
Confidence 5678888887 6799999999999999987542 122334332 5579999999999999998887
Q ss_pred cccCCCccccccCccceeeecCCCCcEEEEEEecCC--CCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEE
Q 000861 915 ISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD--NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 915 ~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d--~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl 992 (1249)
++ . ....++ ...++.+++ ++|+ .+..+.+++|+..| +.++.-+-.............|+|.++
T Consensus 102 ~~----~--------~~~~~d-f~rpiksia-l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 102 TD----D--------EITQYD-FKRPIKSIA-LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI 166 (846)
T ss_pred CC----c--------cceeEe-cCCcceeEE-eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE
Confidence 21 1 111122 235677777 8887 33356889999888 777754422222222234468999999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCC-----CeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVC-----PIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 993 ~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~-----~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
+|. |++++-++.+| |++||..+++.+..+..++.. --..+.| .++.+ ++.|+..+|+|..
T Consensus 167 ~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W-~~~~~-----------LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 167 KWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHW-QDEDR-----------LVIGWGDSVKICS 231 (846)
T ss_pred Eec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEe-cCCCe-----------EEEecCCeEEEEE
Confidence 996 66888877665 799999998888776655422 2345667 55544 4445666788888
Q ss_pred CC
Q 000861 1068 AE 1069 (1249)
Q Consensus 1068 l~ 1069 (1249)
++
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 87
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.0036 Score=75.15 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=111.1
Q ss_pred CEEEEEECCCcEEEEECCCCcccccccee---eEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCcc-c
Q 000861 848 SFFVSASDDSTVKVWDSRKLEKDISFRSR---LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV-E 923 (1249)
Q Consensus 848 ~~laTgs~DgtVkIWD~~~~~~~~~~~~~---~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~-~ 923 (1249)
..++.++.+|.+.-+|..+++....+... ....+...++ . .+..++.++.+|.+..+|.. .|+. -
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~-----~G~~~W 229 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLME-----QGQLIW 229 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEEEEEcc-----CChhhh
Confidence 35556778899999999998743222110 0000111111 1 12356677788988888877 2332 0
Q ss_pred ccc-----CccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCC
Q 000861 924 KYS-----GISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCG 998 (1249)
Q Consensus 924 ~~~-----~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg 998 (1249)
.+. +...+..+... ..... .. +..++.++.+|.+..+|..+|+.+|..... ....+.. .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~---~~sP~-v~-----~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~~--~~ 294 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDV---DTTPV-VV-----GGVVYALAYNGNLVALDLRSGQIVWKREYG----SVNDFAV--DG 294 (394)
T ss_pred eeccccCCCccchhccccc---CCCcE-EE-----CCEEEEEEcCCeEEEEECCCCCEEEeecCC----CccCcEE--EC
Confidence 000 00000000000 00111 11 236777888999999999999998877532 1112222 45
Q ss_pred CEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 999 NWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 999 ~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
..++.++.+|.+..+|..+++.+............+... . ++ .+++++.+|.+.++|..+|+.+....
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~-~g----------~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-Y-NG----------YLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-E-CC----------EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 678888899999999999987765432111111112222 1 22 68999999999999999998766655
No 333
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0073 Score=72.74 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=92.9
Q ss_pred ceEEEEEecCCCE-EEEEeCC---CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEE-
Q 000861 885 RALCTMMLRHSAQ-VVVGACD---GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY- 959 (1249)
Q Consensus 885 ~V~sl~fspdg~~-Lasgs~D---g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~s- 959 (1249)
.+....|+|+|+. ++..+.+ ..|.++|+. .|+ .+.+....+...... |+|| |+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-----tg~---------~~~lt~~~g~~~~~~-~SPD---G~~la~~ 250 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-----TGK---------KEKIASSQGMLVVSD-VSKD---GSKLLLT 250 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-----CCc---------EEEEecCCCcEEeeE-ECCC---CCEEEEE
Confidence 6778999999985 6544443 457777776 222 122222344455555 9999 555544
Q ss_pred EECC--CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-C--cEEEEeCCCCCcccccccCCCCCeeE
Q 000861 960 STQN--CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-G--VLTLWDLRFLVPVNSWQYSQVCPIEK 1034 (1249)
Q Consensus 960 gs~d--g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G--~I~lWDlr~~~~l~s~~~~~~~~I~~ 1034 (1249)
.+.+ ..|.++|+.+++.. .+.. +.+......|+|||+.++..+.. | .|.++|+..+...+....+. ..
T Consensus 251 ~~~~g~~~Iy~~dl~~g~~~-~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~ 323 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKTLT-QITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NN 323 (419)
T ss_pred EccCCCcEEEEEECCCCcEE-Eccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cC
Confidence 4333 57888898877643 3321 23333456899999888776643 3 58888887776543322221 12
Q ss_pred EEEEcCCCCCcccCCCCCEEEEEECC---------CeEEEEECCCCc
Q 000861 1035 MCLFVPPPNAAVSTTARPLIYVAAGC---------NEVSLWNAENGS 1072 (1249)
Q Consensus 1035 l~~~sp~g~~~~~~~~~~~l~t~s~D---------g~I~vWDl~tg~ 1072 (1249)
..| +|+|+ +++..+.. ..|.+.|+.++.
T Consensus 324 ~~~-SPDG~---------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 324 SSV-STYKN---------YIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred ceE-CCCCC---------EEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 478 99998 56555432 257777777665
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0018 Score=78.72 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=106.9
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCC
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC 964 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg 964 (1249)
.+.|++++ ++.|+-|+-+|.|++++.. |.. ++...|... ..+ |.++++|+.||
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~------~~~---------~~~~~~s~~-------~~~---Gey~asCS~DG 93 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ------GNP---------KTNFDHSSS-------ILE---GEYVASCSDDG 93 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC------Ccc---------ccccccccc-------ccC---CceEEEecCCC
Confidence 45566654 5789999999999999987 321 111112111 223 78999999999
Q ss_pred eEEEEEcCCCccceeeecCCCCCceEEEEEcCC-----CCEEEEEecCCcEEEEeCC-CCCcccccccCCCCCeeEEEEE
Q 000861 965 GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPC-----GNWFVSGSSRGVLTLWDLR-FLVPVNSWQYSQVCPIEKMCLF 1038 (1249)
Q Consensus 965 ~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spd-----g~~L~sgs~dG~I~lWDlr-~~~~l~s~~~~~~~~I~~l~~~ 1038 (1249)
+|.+-.+-+.+...++.. +.++.+++++|+ .+.+++|+..| +.++.-+ .|.......+...++|.++.|
T Consensus 94 kv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W- 168 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW- 168 (846)
T ss_pred cEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe-
Confidence 999999999888777765 678999999998 47899999999 8787644 222222223346789999999
Q ss_pred cCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1039 VPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1039 sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.|+ +++-+..+| |+|||..+++.+..+.
T Consensus 169 --~g~---------lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 169 --RGN---------LIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred --cCc---------EEEEecCCC-cEEEeccccceeeccC
Confidence 455 666665554 9999999887665554
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0014 Score=73.74 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=124.1
Q ss_pred EEEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC-CEEEEEeCCC
Q 000861 828 VAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS-AQVVVGACDG 905 (1249)
Q Consensus 828 v~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg-~~Lasgs~Dg 905 (1249)
+.-+.+|...|..++|||..+ ++..++-+.+|+|.|+++.. ...++..+ ..+++++|.-|. +++..|-.+|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccce------eeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 446778889999999999887 78889999999999999875 34566667 569999998855 6777888899
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCC--CCccEEEEEECCCeEEEEEcCCCccc--eeee
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN--CASHMFMYSTQNCGIHLWDTRSNSNT--WTLK 981 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~--~~g~~L~sgs~dg~I~iwDlrt~~~~--~~l~ 981 (1249)
.|.+||+.... +.+..+.+ +....+|..++...|+. +.+.+++.... ....|.+...... ..++
T Consensus 259 ~VlvyD~R~~~---~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 259 MVLVYDMRQPE---GPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEEEEccCCC---chHhhhhh-------hhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccc
Confidence 99999998322 21100110 01122333333222210 01224443333 2455665433222 2222
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEecC-C-------cEEEEeCCCCCcccccccCC-CCCeeEE-----EEEcCCCCCccc
Q 000861 982 AIPEEGYVSSLVTGPCGNWFVSGSSR-G-------VLTLWDLRFLVPVNSWQYSQ-VCPIEKM-----CLFVPPPNAAVS 1047 (1249)
Q Consensus 982 ~~~h~~~I~sl~~spdg~~L~sgs~d-G-------~I~lWDlr~~~~l~s~~~~~-~~~I~~l-----~~~sp~g~~~~~ 1047 (1249)
. +..|...++.+++..+.++..... . ++---|-++|.++..-+..+ +++-+.+ .+-.++.+
T Consensus 327 l-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn---- 401 (463)
T KOG1645|consen 327 L-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN---- 401 (463)
T ss_pred c-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc----
Confidence 2 235677788888755554443322 1 11112233444333222222 1111111 11022222
Q ss_pred CCCCCEEEE-EECCCeEEEEECCCCceeEEEe
Q 000861 1048 TTARPLIYV-AAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1048 ~~~~~~l~t-~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
+|+. +...+++.+||..+++..+.+.
T Consensus 402 -----~iv~~gd~tn~lil~D~~s~evvQ~l~ 428 (463)
T KOG1645|consen 402 -----YIVVVGDSTNELILQDPHSFEVVQTLA 428 (463)
T ss_pred -----EEEEecCCcceeEEeccchhheeeecc
Confidence 4443 3345789999999998888776
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.72 E-value=0.0001 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred eeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 875 SRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 875 ~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
+..++.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4668999999999999999999999999999999997
No 337
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.011 Score=65.94 Aligned_cols=198 Identities=14% Similarity=0.106 Sum_probs=119.0
Q ss_pred CccCCCCcEEEEeccccCceeEEEEc-CCCCEEEEEECCCcEEEEECCCCccccccceeeEee--c-cCCceEEEEEecC
Q 000861 819 SGWRPRGILVAHLQEHCSAVNEIAIS-HDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH--L-EGSRALCTMMLRH 894 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~H~~~V~~la~s-pdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~--~-h~~~V~sl~fspd 894 (1249)
..|++.+.....+.... ...+++. +++.++++ .. +.+.++|..+++.. ...... . .......+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~----~~~~~~~~~~~~~~~ND~~vd~~ 96 (246)
T PF08450_consen 25 YRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVT----VLADLPDGGVPFNRPNDVAVDPD 96 (246)
T ss_dssp EEEETTTTEEEEEESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEE----EEEEEETTCSCTEEEEEEEE-TT
T ss_pred EEEECCCCeEEEEecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEE----EEeeccCCCcccCCCceEEEcCC
Confidence 34556655554443322 6777787 67655554 44 44566698887531 122221 1 2347889999999
Q ss_pred CCEEEEEeCCCe------EEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEE-EEECCCeEE
Q 000861 895 SAQVVVGACDGI------IHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFM-YSTQNCGIH 967 (1249)
Q Consensus 895 g~~Lasgs~Dg~------I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~-sgs~dg~I~ 967 (1249)
|+..++...... =.+|.++ .. ++ +......-.....++ |+|+ ++.|+ +-+..+.|.
T Consensus 97 G~ly~t~~~~~~~~~~~~g~v~~~~-~~---~~---------~~~~~~~~~~pNGi~-~s~d---g~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 97 GNLYVTDSGGGGASGIDPGSVYRID-PD---GK---------VTVVADGLGFPNGIA-FSPD---GKTLYVADSFNGRIW 159 (246)
T ss_dssp S-EEEEEECCBCTTCGGSEEEEEEE-TT---SE---------EEEEEEEESSEEEEE-EETT---SSEEEEEETTTTEEE
T ss_pred CCEEEEecCCCccccccccceEEEC-CC---Ce---------EEEEecCcccccceE-ECCc---chheeecccccceeE
Confidence 997776554311 2344444 10 22 122222234567788 9999 55554 566788999
Q ss_pred EEEcCCCcc-c---ee-eecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCC
Q 000861 968 LWDTRSNSN-T---WT-LKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 968 iwDlrt~~~-~---~~-l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g 1042 (1249)
.+|+..... + .. .......+..-.++++.+|+..++....+.|.++|.+ |+.+..+..+ ...+++++|-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCC
Confidence 999974332 1 11 2222233468899999999988888889999999997 8888888776 34788999822444
Q ss_pred C
Q 000861 1043 N 1043 (1249)
Q Consensus 1043 ~ 1043 (1249)
.
T Consensus 238 ~ 238 (246)
T PF08450_consen 238 K 238 (246)
T ss_dssp S
T ss_pred C
Confidence 4
No 338
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.71 E-value=0.00086 Score=80.21 Aligned_cols=329 Identities=16% Similarity=0.168 Sum_probs=212.0
Q ss_pred hhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhc
Q 000861 146 RKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLF 225 (1249)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~ 225 (1249)
..+.-.+||--+..+..-+++.+ |+--+++++-+..+.=|||+.|..++.+...++..
T Consensus 485 idn~deYVRnttarafavvasal----------------------gip~llpfLkavc~SkkSwqaRhTgIkivqqIail 542 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASAL----------------------GIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL 542 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHHhccccchhhhchhhHHHHHHHHH
Confidence 44555678888887777777777 66678999999999977999999999999999998
Q ss_pred CChHH--HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHH
Q 000861 226 IDDED--RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNI 303 (1249)
Q Consensus 226 ~~de~--~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l 303 (1249)
++-.. -+.-++-.+-+.|+|..-.||..++.+|+.+.+.+. |-....|.+-+-|.-+...+... .+-.+|-..+
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~---Pygie~fDsVlkpLwkgir~hrg-k~laafLkAi 618 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT---PYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAI 618 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 88664 455566677888999999999999999999888764 33555777666666555444333 3335555555
Q ss_pred HHH-----HHHHHHHHH--HHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCC-
Q 000861 304 AKL-----ALTAYGFLV--HSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQ- 375 (1249)
Q Consensus 304 ~~L-----A~~a~rf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~- 375 (1249)
+.| ++-|.-|-. |-.-.++- -..|++. .+.++..|.+.+. +|.
T Consensus 619 gyliplmd~eya~yyTrevmlil~rEf-------------------------~sPDeem---kkivLKVv~qcc~-t~Gv 669 (1172)
T KOG0213|consen 619 GYLIPLMDAEYASYYTREVMLILIREF-------------------------GSPDEEM---KKIVLKVVKQCCA-TDGV 669 (1172)
T ss_pred hhccccccHHHHHHhHHHHHHHHHHhh-------------------------CCChHHH---HHHHHHHHHHHhc-ccCC
Confidence 555 233332220 11111100 0013333 2455666666553 222
Q ss_pred ---------------CHHHHHHHH---------HhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhc
Q 000861 376 ---------------TPSIRRALL---------QDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCF 431 (1249)
Q Consensus 376 ---------------~~~Vr~all---------~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~ 431 (1249)
.+..|+.++ .--..+|.-.|. +-++.-++.=+.|..++.|.-..+.+-.+-.
T Consensus 670 ~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~----~~~v~R~v~~lkde~e~yrkm~~etv~ri~~ 745 (1172)
T KOG0213|consen 670 EPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS----DPIVSRVVLDLKDEPEQYRKMVAETVSRIVG 745 (1172)
T ss_pred CHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc----hHHHHHHhhhhccccHHHHHHHHHHHHHHHh
Confidence 123344333 112345555554 4466777777889999999999999999998
Q ss_pred ccChhhHHHhHHHHHHHHc------cCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHH
Q 000861 432 FVGERSVEEYLLPYIEQAL------SDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFI 505 (1249)
Q Consensus 432 ~lG~~~~~~~llPll~q~L------~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i 505 (1249)
.+|...+.+.+.-.++.++ .|.+..|....+..... +.|-=-|+.+-.|+..++-.|.||..-+|+-++.+|
T Consensus 746 ~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~--~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadli 823 (1172)
T KOG0213|consen 746 RLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN--ALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLI 823 (1172)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH--HHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 8887666555544444332 24455555544443332 112323567778999999999999999999999999
Q ss_pred HHHhhcCCc---cceeeEeeeccchhhhcCCCC
Q 000861 506 AASSESLGA---VDSYVFLAPVIRPFLRRQPAS 535 (1249)
Q Consensus 506 ~~~a~~l~~---~d~~~~l~P~l~~~l~~~v~~ 535 (1249)
..+|..|.. .....++=-++-.||-.+-|.
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylgeeypE 856 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPE 856 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCcccHH
Confidence 999977643 223333334455555555444
No 339
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=97.69 E-value=0.00049 Score=83.45 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=133.1
Q ss_pred cccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccccc
Q 000861 189 CEGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268 (1249)
Q Consensus 189 ~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~ 268 (1249)
.+-...+++.|...++....-+..+--++.+-.|.+.+.+|..++.|+|.+..-++|.+..++..+++.++.+++.++
T Consensus 344 ~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 344 NEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-- 421 (700)
T ss_pred hhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--
Confidence 444556788888777765666667777788888999999999999999999999999999999999999999999985
Q ss_pred CCCCCcchhhchhhhccCCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 269 PPSDAKIFPEYILPMLSMLP-DDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 269 ~~~~~~if~eyilP~l~~l~-~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
....-+.|||.|..+. ......||..++.|++.|++...++..+
T Consensus 422 ----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~------------------------------- 466 (700)
T KOG2137|consen 422 ----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVL------------------------------- 466 (700)
T ss_pred ----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhH-------------------------------
Confidence 3466788999999987 4567899999999999999777666655
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhh--hhhcCccccchhhhhhHhhhhc
Q 000861 348 RLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNL--CSFFGQRQSNDFLLPILPAFLN 412 (1249)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l--~~f~G~~~~~d~lLp~l~t~ln 412 (1249)
+.+.+++...= -.+|++...++.=...+ -..-|.+-+.+.+||.++-++-
T Consensus 467 ------------d~~lpi~~~~~---~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 467 ------------DELLPILKCIK---TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred ------------HHHHHHHHHhc---CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 56666666642 24677777776643333 3333457777888888877664
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0019 Score=72.77 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=71.1
Q ss_pred EEEEECCCCccccccceeeEeeccCCceEEEEEecCCC-EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCC
Q 000861 859 VKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSA-QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK 937 (1249)
Q Consensus 859 VkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~-~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h 937 (1249)
|++.+..+.. +...+.+|+..|.+++|+|..+ .+..++.+..|+|.|++. .. .+..+..+
T Consensus 175 v~~l~~~~fk------ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-----~~--------~vssy~a~ 235 (463)
T KOG1645|consen 175 VQKLESHDFK------SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-----SC--------VVSSYIAY 235 (463)
T ss_pred eEEeccCCcc------hhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-----ce--------eeeheecc
Confidence 5555555444 2335667788899999999776 788899999999999981 11 23444444
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~ 976 (1249)
..+++++ |.-+. .++++.|..+|.|.+||+|..+-
T Consensus 236 -~~~wSC~-wDlde--~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 236 -NQIWSCC-WDLDE--RHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred -CCceeee-eccCC--cceeEEeccCceEEEEEccCCCc
Confidence 6788998 98885 56888888999999999997653
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.68 E-value=0.00022 Score=87.00 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=124.5
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
.++.|+....+..+|+++.+....... ..+.|+-++ .+++.+.+|...|+|.+-|.++.+.++++. .|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDf 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDF 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeec--cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccceeee
Confidence 788888888999999999887766643 233455444 567899999999999999999999999987 488888887
Q ss_pred EEEcCCCCCcccCCCCCEEEEEEC---------CCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAG---------CNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKT 1106 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~---------Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~ 1106 (1249)
.. .|+ .+++||. |.-|+|||++..+.+.-+..+.+
T Consensus 224 Dv---~GN---------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------------------------ 267 (1118)
T KOG1275|consen 224 DV---QGN---------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------------------------ 267 (1118)
T ss_pred ec---cCC---------eEEEeecccccccccccchhhhhhhhhhhccCCcccccC------------------------
Confidence 66 455 7888775 44589999886654332221111
Q ss_pred cccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEEeCCCcEEEEeCC---CCCccEEEeCCCCCCCCCCcceee
Q 000861 1107 DLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTGGTDLKIRRWDHC---SPGRSYCICGPNLKGVGNDEFYET 1181 (1249)
Q Consensus 1107 dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tgs~Dg~IriWDl~---~~~~~~~l~g~~~~~~~~~~~y~~ 1181 (1249)
-.-+.|.|.- .++.++..|...+-|.. ++.......
T Consensus 268 ------------------------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v--------------- 308 (1118)
T KOG1275|consen 268 ------------------------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV--------------- 308 (1118)
T ss_pred ------------------------chhhhhcccccceEEEEecccceeeccccccCCCccceeEE---------------
Confidence 1123344443 67778888888888843 221111110
Q ss_pred ccCCceEEeeccccCCccchhhHHHHHhhhcccccCCcccceeEEEeeecCCCEEEEEeCCCeEEEcC
Q 000861 1182 RSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1182 ~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~H~d~I~~la~~s~dg~~LaSgs~DG~IkVWd 1249 (1249)
. .-...|..++ +++++..|+-|+.+|.|.+|-
T Consensus 309 --------~---------------------------p~~s~i~~fD-iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 --------N---------------------------PNGSGISAFD-ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --------c---------------------------cCCCcceeEE-ecCCCceEEEecccCcEeeec
Confidence 0 1123488888 899999999999999999993
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.68 E-value=0.0057 Score=72.55 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=128.5
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCC---------------------Ccc----ccc-----cCccceeee
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGL---------------------GNV----EKY-----SGISDIKKK 934 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~---------------------g~~----~~~-----~~~~~i~~l 934 (1249)
.|+++.|.++..-|++|...|.|.+|......... +.+ .+. .+..+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999999886321111 111 000 122344455
Q ss_pred cCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCC------CCCceEEEEEcC-----CC---CE
Q 000861 935 DTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIP------EEGYVSSLVTGP-----CG---NW 1000 (1249)
Q Consensus 935 ~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~------h~~~I~sl~~sp-----dg---~~ 1000 (1249)
+...++|++++ .+.-| +++.|..+|.+.+.|+|....++.-.... ....|+++.|.- |+ -.
T Consensus 83 ~~~~g~vtal~-~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALK-NSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEE-E-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEe-cCCCc----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66689999998 55443 99999999999999999988776643322 345688888863 33 47
Q ss_pred EEEEecCCcEEEEeCCC---CCc---ccccccCCCCCeeEEEEEcCC-CCCcc----------cCCCCCEEEEEECCCeE
Q 000861 1001 FVSGSSRGVLTLWDLRF---LVP---VNSWQYSQVCPIEKMCLFVPP-PNAAV----------STTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 1001 L~sgs~dG~I~lWDlr~---~~~---l~s~~~~~~~~I~~l~~~sp~-g~~~~----------~~~~~~~l~t~s~Dg~I 1063 (1249)
+++|+..|.+.+|.+-- +.- .......+.++|..+..+..+ |.... ....-+.+++...+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 88999999999998741 110 011111355677777753332 22100 11122345666678889
Q ss_pred EEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEee-----cC
Q 000861 1064 SLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLP-----LP 1138 (1249)
Q Consensus 1064 ~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~-----sp 1138 (1249)
+++...+.++...... .+. ....+.+ ..
T Consensus 238 rv~~~~~~k~~~K~~~--~~~---------------------------------------------~~~~~~vv~~~~~~ 270 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFD--DPF---------------------------------------------LCSSASVVPTISRN 270 (395)
T ss_dssp EEE-TT---EEEEE-S--S-E---------------------------------------------EEEEEEEEEEE-EE
T ss_pred EEEeCCCCcccceeec--ccc---------------------------------------------ccceEEEEeecccC
Confidence 9999887776554431 000 1122222 12
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCCccEEEeC
Q 000861 1139 GG-DLLTGGTDLKIRRWDHCSPGRSYCICG 1167 (1249)
Q Consensus 1139 dg-~L~tgs~Dg~IriWDl~~~~~~~~l~g 1167 (1249)
.+ .|++-..+|.|+++.+...+.+..+.-
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 34 788888999999999998877766653
No 343
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.66 E-value=0.0067 Score=68.10 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=122.6
Q ss_pred EEEEecCCCCCccEEEEEECCCe-EEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEe-----cCCcEEEEeCC
Q 000861 943 TLVNYNTDNCASHMFMYSTQNCG-IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGS-----SRGVLTLWDLR 1016 (1249)
Q Consensus 943 ~l~~fs~d~~~g~~L~sgs~dg~-I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs-----~dG~I~lWDlr 1016 (1249)
.++ .+|.. ...++.+-.-|. ..+||.++++....+..+...-.-=--+|++||++|++.- ..|.|-+||.+
T Consensus 9 ~~a-~~p~~--~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVA-AHPTR--PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cee-eCCCC--CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 444 67753 446777776664 7789999999887775432222222358999999999853 45899999998
Q ss_pred -CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC------------------CCeEEEEECCCCceeEEE
Q 000861 1017 -FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG------------------CNEVSLWNAENGSCHQVL 1077 (1249)
Q Consensus 1017 -~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~------------------Dg~I~vWDl~tg~~~~~l 1077 (1249)
....+..|.. +.-.-..+.+ .|+|. .|+++-+ +..+...|..+|+.+...
T Consensus 86 ~~~~ri~E~~s-~GIGPHel~l-~pDG~---------tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 86 RGYRRIGEFPS-HGIGPHELLL-MPDGE---------TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CCcEEEeEecC-CCcChhhEEE-cCCCC---------EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 5566777764 4444567788 89986 4555532 235677788888877775
Q ss_pred ecccCCCCCCcccccccccCCCCCCCCCcccccccccccc------------------ccccCCC----CCCCCCeEEEe
Q 000861 1078 RTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYR------------------VDELNEP----PPRLLGIRSLL 1135 (1249)
Q Consensus 1078 ~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~------------------~~~~~~~----~~~~~~V~sl~ 1135 (1249)
......+..++.-+++.. +|.......+. +..+..+ ..-...+-+++
T Consensus 155 ~Lp~~~~~lSiRHLa~~~-----------~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDG-----------DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred ecCccccccceeeEEecC-----------CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEE
Confidence 543333333344444333 22222111110 0001110 11225788999
Q ss_pred ecCCC--eEEEEeCCCcEEEEeCCCCCccEEEe
Q 000861 1136 PLPGG--DLLTGGTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1136 ~spdg--~L~tgs~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
++++| ..+|+-..+++.+||..+++.+....
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 99998 44666678899999999988755543
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0026 Score=77.87 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=101.3
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCC----
Q 000861 889 TMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC---- 964 (1249)
Q Consensus 889 l~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg---- 964 (1249)
-+|++++..++.|+.+|.|.+++-. ...++.++.+...+.... +.-+. ..+|++.+.|+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------------~~~~~~fqa~~~siv~~L-~~~~~--~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------------FQLIRGFQAYEQSIVQFL-YILNK--QNFLFSVGEDEQGNP 91 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------------ceeeehheecchhhhhHh-hcccC--ceEEEEEeecCCCCc
Confidence 3567888899999999988777654 112345555555533332 34332 24777766654
Q ss_pred -eEEEEEcCCC------ccc-----eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeC---CCCCcccccccCCC
Q 000861 965 -GIHLWDTRSN------SNT-----WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDL---RFLVPVNSWQYSQV 1029 (1249)
Q Consensus 965 -~I~iwDlrt~------~~~-----~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDl---r~~~~l~s~~~~~~ 1029 (1249)
.|++||+..- .+. .+++++....++++++++.+-..+|+|-.+|.|.++.- |.......+.+...
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 5999998642 222 11233334678999999999999999999999999953 23333334455567
Q ss_pred CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1030 CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1030 ~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
.+|+.+.+ ..++. ..++++ ....|.+|.+.
T Consensus 172 ~pITgL~~-~~d~~--------s~lFv~-Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 172 EPITGLAL-RSDGK--------SVLFVA-TTEQVMLYSLS 201 (933)
T ss_pred CCceeeEE-ecCCc--------eeEEEE-ecceeEEEEec
Confidence 89999999 66665 124444 34568888887
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.64 E-value=0.00082 Score=82.28 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=129.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 846 DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 846 dg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
++..++-|+-...+...|..+.... .......+.|+-+ ..+++.+.+|...|+|.+-|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~------r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~------------ 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET------RTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPN------------ 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceee------eeeeccCCceEEE--EecCcEEEeecccceEEeecCC------------
Confidence 3456777888888888999887632 2222233334444 3478899999999999999987
Q ss_pred cCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC---------CeEEEEEcCCCccceeeecCCCCCceEEEEEcC
Q 000861 926 SGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN---------CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGP 996 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d---------g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~sp 996 (1249)
..+.+++++.|.+.+.++. .. |+.|++++.. .-|++||+|.++.+..+.. +.++ .-+.|+|
T Consensus 206 -s~~~iht~~aHs~siSDfD-v~-----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P-~flrf~P 275 (1118)
T KOG1275|consen 206 -SFETIHTFDAHSGSISDFD-VQ-----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGP-QFLRFHP 275 (1118)
T ss_pred -cCceeeeeeccccceeeee-cc-----CCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCc-hhhhhcc
Confidence 2345888999999888765 33 5588888864 4589999999988766654 2222 4456777
Q ss_pred CC-CEEEEEecCCcEEEEeCC---CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 997 CG-NWFVSGSSRGVLTLWDLR---FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 997 dg-~~L~sgs~dG~I~lWDlr---~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
.- ..+++++..|...+-|.. ....-.....+.+..+..+++ ++++. .++.+..+|.|.+|-
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi-Ssn~~---------alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI-SSNGD---------ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe-cCCCc---------eEEEecccCcEeeec
Confidence 53 678888999999999943 221111122334556889999 99888 899999999999996
No 346
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00037 Score=82.70 Aligned_cols=244 Identities=16% Similarity=0.063 Sum_probs=157.5
Q ss_pred CCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccc--ccCCCCCcchhhchhhhc
Q 000861 207 KLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVR--NFPPSDAKIFPEYILPML 284 (1249)
Q Consensus 207 ~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~--~~~~~~~~if~eyilP~l 284 (1249)
.-.++|-.|++-+++|++-+.=. +-+..-.+.+++|+...||.+|++-+.-...... .....+..-..+-.|-.+
T Consensus 210 ~D~~Vrt~A~eglL~L~eg~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~v 286 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSEGFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSV 286 (823)
T ss_pred CCcchHHHHHHHHHhhccccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHH
Confidence 66788999999999999833221 1223344788999999999999998876666552 111112333445567778
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHh----hh---ccc---ccccCCCCCCCCCCCcchhhhhccchh
Q 000861 285 SMLPDDPEESVRICYASNIAKLALTAYGFLVHS--IRL----SE---AGV---LDKLSAPHKSPSSSNETSVQLQRLNAD 352 (1249)
Q Consensus 285 ~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~--~~~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1249)
...+.|.++.||+..|..|+.+-+....|+... +.+ +. .+. ..-++..- +++ .....--..
T Consensus 287 C~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew-----SsG--k~~~advps 359 (823)
T KOG2259|consen 287 CRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW-----SSG--KEWNADVPS 359 (823)
T ss_pred HHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc-----ccC--ccccccCch
Confidence 888999999999999999999988888776543 111 10 000 00000000 000 000000000
Q ss_pred HHHHHHHHHHHH-----HHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhh
Q 000861 353 VQLSQLRKSIAE-----VVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIV 427 (1249)
Q Consensus 353 ~~~~~~~~~l~~-----~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~ 427 (1249)
++.+.--+.|.| .|..=| .|+.-+||+|++.++..|+. .+..+-+.=|-+|..++||...-||.--+-++.
T Consensus 360 ee~d~~~~siI~sGACGA~VhGl--EDEf~EVR~AAV~Sl~~La~--ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~ 435 (823)
T KOG2259|consen 360 EEDDEEEESIIPSGACGALVHGL--EDEFYEVRRAAVASLCSLAT--SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALT 435 (823)
T ss_pred hhccccccccccccccceeeeec--hHHHHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111110112211 122222 38889999999999988874 344556667788999999999999998888888
Q ss_pred hhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 000861 428 YVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAI 467 (1249)
Q Consensus 428 ~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~ 467 (1249)
.|+..+- ..+..|+.+...|.|..+.||+++.+-|+.
T Consensus 436 ~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 436 MISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888733 346778999999999999999987776654
No 347
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.0012 Score=77.30 Aligned_cols=242 Identities=21% Similarity=0.165 Sum_probs=145.6
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCC
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDA 273 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~ 273 (1249)
..+..+...+.+ ..+..|..|...+..+. ..+.+|.+..++.|.++.||..|+..|..+-.
T Consensus 43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------- 103 (335)
T COG1413 43 EAADELLKLLED-EDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD---------- 103 (335)
T ss_pred hhHHHHHHHHcC-CCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence 345556666677 57888999887755443 36789999999999999999999996554332
Q ss_pred cchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhH
Q 000861 274 KIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADV 353 (1249)
Q Consensus 274 ~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1249)
++.+-|.+..+.+|++..||...|..|+.+-.... ...+-..+.+ .
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a-~~~l~~~l~~------------------------------~ 149 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGDERA-LDPLLEALQD------------------------------E 149 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh-hHHHHHHhcc------------------------------c
Confidence 22233333344448999999999999888743322 0001000000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhccc
Q 000861 354 QLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFV 433 (1249)
Q Consensus 354 ~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~l 433 (1249)
.... ....+ .+....||.+++..+..+.. ....+.++.++.|.+..+|.+.+..+..+....
T Consensus 150 ~~~~-------a~~~~---~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 150 DSGS-------AAAAL---DAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhh-------hhhhc---cchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 0000 00000 01122577777776665442 224577777888888888888887777666544
Q ss_pred ChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-----------CCCc-----------hHHHHHHHHHhccccc
Q 000861 434 GERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS-----------GYLR-----------KRILLEMIERAFPLLC 491 (1249)
Q Consensus 434 G~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~-----------gl~~-----------~~~~~~l~~~~~~ll~ 491 (1249)
.++.+.+.+.+.|+...||.+++..|..+-.. ..-+ +...........-.+.
T Consensus 212 ------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (335)
T COG1413 212 ------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLI 285 (335)
T ss_pred ------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhh
Confidence 46778888888888888888877766652110 0000 0001122334455566
Q ss_pred CCCHHHHHHHHHHHHHHhhcC
Q 000861 492 YPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 492 hpn~wiR~~~~~~i~~~a~~l 512 (1249)
|.++++|..+...+..+....
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 286 DEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred cchhhHHHHHHHHHHhhcccc
Confidence 778888888777777666543
No 348
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.61 E-value=0.00063 Score=73.70 Aligned_cols=231 Identities=13% Similarity=0.142 Sum_probs=134.9
Q ss_pred CCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCC-cc-ccccCccc----eeeecCCCCcEEEEEEecCCCCCccE
Q 000861 883 GSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLG-NV-EKYSGISD----IKKKDTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 883 ~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g-~~-~~~~~~~~----i~~l~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
...|+++.|...|.++++|...|.|.+|.-+ ...+.. +. ..|.+... ++.++ -...|..+.+|.+.+ ...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~-~s~~ceykf~teFQshe~EFDYLkSle-ieEKin~I~w~~~t~--r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFERE-KSYGCEYKFFTEFQSHELEFDYLKSLE-IEEKINAIEWFDDTG--RNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecc-cccccchhhhhhhcccccchhhhhhcc-HHHHhhheeeecCCC--cce
Confidence 3569999999999999999999999999876 221100 00 11111111 11111 123477777666665 347
Q ss_pred EEEEECCCeEEEEEcCCCcc-------------------c---ee-------------------eecCCCCCceEEEEEc
Q 000861 957 FMYSTQNCGIHLWDTRSNSN-------------------T---WT-------------------LKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~-------------------~---~~-------------------l~~~~h~~~I~sl~~s 995 (1249)
++..+.|.+|++|-+..... + .. +....|..-|.++.+.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 88889999999998864310 0 00 0112355568889999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCcc---cccccCCC-----CCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEE
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRFLVPV---NSWQYSQV-----CPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWN 1067 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~~~~l---~s~~~~~~-----~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWD 1067 (1249)
.|...++++ .|=.|.+|++.-.... ..+. +|. .-|++..| +|... ..+.-.+..|+|++-|
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeF-hp~~c--------n~fmYSsSkG~Ikl~D 250 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEF-HPEMC--------NVFMYSSSKGEIKLND 250 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhccc-CHhHc--------ceEEEecCCCcEEehh
Confidence 988887765 4667999988532111 1111 121 24677788 88654 3556667789999999
Q ss_pred CCCCcee-EEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEe
Q 000861 1068 AENGSCH-QVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGG 1146 (1249)
Q Consensus 1068 l~tg~~~-~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs 1146 (1249)
++..... ..-....... |+ .+.....+....|..+.|+++|.++.+-
T Consensus 251 lRq~alcdn~~klfe~~~----------------------D~----------v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 251 LRQSALCDNSKKLFELTI----------------------DG----------VDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred hhhhhhccCchhhhhhcc----------------------Cc----------ccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 9843211 0000000000 00 0000011222378889999999444444
Q ss_pred CCCcEEEEeCCCCC
Q 000861 1147 TDLKIRRWDHCSPG 1160 (1249)
Q Consensus 1147 ~Dg~IriWDl~~~~ 1160 (1249)
.=-+|++||+...+
T Consensus 299 dyltvkiwDvnm~k 312 (460)
T COG5170 299 DYLTVKIWDVNMAK 312 (460)
T ss_pred ccceEEEEeccccc
Confidence 55799999997644
No 349
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=97.60 E-value=0.00049 Score=83.42 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHH
Q 000861 361 SIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEE 440 (1249)
Q Consensus 361 ~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~ 440 (1249)
++.|.+..++... ..-.+...+++++.-|..-.-++...+.|||.|..-++|.+-++-..+++.++-++.++-..++.+
T Consensus 349 ~~~p~l~pi~~~~-~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~ 427 (700)
T KOG2137|consen 349 KMLPALKPIYSAS-DPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ 427 (700)
T ss_pred hhhHHHHHHhccC-CcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH
Confidence 4445555544311 235677788889988888889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH-ccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhc--CCccce
Q 000861 441 YLLPYIEQA-LSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSES--LGAVDS 517 (1249)
Q Consensus 441 ~llPll~q~-L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~--l~~~d~ 517 (1249)
.|+|.+.+. +.-+.-.|+.+++-|+..|++ -+.+..+.+.+..++.-..-+..-|-+..+.++..++-. .|.+-+
T Consensus 428 ~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~ 505 (700)
T KOG2137|consen 428 AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM 505 (700)
T ss_pred HHHHHhhcchhcccchHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee
Confidence 999999876 666788999999999999986 555665444444333333333445666777766666533 334677
Q ss_pred eeEeeeccchhhhcCCCCc
Q 000861 518 YVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 518 ~~~l~P~l~~~l~~~v~~i 536 (1249)
...++|++.++...+.-++
T Consensus 506 ~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 506 AENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred hhhhhhhhhhhhhcccccH
Confidence 7789999999888776443
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0008 Score=81.19 Aligned_cols=92 Identities=7% Similarity=-0.006 Sum_probs=72.7
Q ss_pred CCCCCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecC
Q 000861 815 SIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRH 894 (1249)
Q Consensus 815 ~~~~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspd 894 (1249)
+++..++-.+|.+-....- .-.+++++|+|..-.|+.|-.-|.+.+|...+.+. ......|..+|..+.|+++
T Consensus 40 ~GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~------htv~~th~a~i~~l~wS~~ 112 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET------HTVVETHPAPIQGLDWSHD 112 (1416)
T ss_pred CceEEEEecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee------eeeccCCCCCceeEEecCC
Confidence 3456677777765544331 22356799999988899999999999999988762 2234458889999999999
Q ss_pred CCEEEEEeCCCeEEEEEcc
Q 000861 895 SAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 895 g~~Lasgs~Dg~I~vwdv~ 913 (1249)
|..++++..-|.+++|+.+
T Consensus 113 G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 113 GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCeEEEcCCCceeEEEEee
Confidence 9999999999999999988
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.076 Score=57.05 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=113.1
Q ss_pred EcCCC-CEEEEEECCCcEEEEECCCCccccccceeeEeec-cCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCC
Q 000861 843 ISHDH-SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL-EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLG 920 (1249)
Q Consensus 843 ~spdg-~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~-h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g 920 (1249)
+.+|. .+++.||..|.++--|..++... +.. -+.+|-+-+.. -|++++.|+..|.+++.++. +|
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~--------We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~-----tG 83 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLI--------WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVK-----TG 83 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEE--------eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEec-----ch
Confidence 34444 46777888888888888887531 111 22344444333 46789999999999999998 33
Q ss_pred ccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCE
Q 000861 921 NVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNW 1000 (1249)
Q Consensus 921 ~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~ 1000 (1249)
.. +..+.. .+.|-+-+...++ +..+..|+.|++.+..|.++..+++..+.. .+.-.+-++.|-...
T Consensus 84 s~--------~w~f~~-~~~vk~~a~~d~~---~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 84 SQ--------IWNFVI-LETVKVRAQCDFD---GGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGS 149 (354)
T ss_pred hh--------eeeeee-hhhhccceEEcCC---CceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCCce
Confidence 21 111111 1222222224566 569999999999999999999999887652 233344566663334
Q ss_pred EEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeE
Q 000861 1001 FVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1001 L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~ 1075 (1249)
|..++..|.+.--.......-.-|.....+||.+ +|--- ++.+..++-||.+.-+| +.|+.+.
T Consensus 150 ly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~----splcv-------~~sv~i~~VdG~l~~f~-~sG~qvw 212 (354)
T KOG4649|consen 150 LYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFA----SPLCV-------GSSVIITTVDGVLTSFD-ESGRQVW 212 (354)
T ss_pred EEEEeccceEEEEccCCCCcceehhhhcCCcccc----Cceec-------cceEEEEEeccEEEEEc-CCCcEEE
Confidence 5555555655544444432222233223344432 11110 12567777888888888 5665444
No 352
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.57 E-value=0.0021 Score=79.22 Aligned_cols=266 Identities=17% Similarity=0.207 Sum_probs=176.5
Q ss_pred HHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcc
Q 000861 196 ASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKI 275 (1249)
Q Consensus 196 l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~i 275 (1249)
..+++.|+.+ .....=-.+|++|..+............+.|++...|..+.+.||..|++.|..++..-.... ..+
T Consensus 40 ~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~---~~~ 115 (503)
T PF10508_consen 40 EPVLFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA---QLL 115 (503)
T ss_pred HHHHHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH---HHh
Confidence 3447788877 344444677788888888888777789999999999999999999999999887764322100 001
Q ss_pred hhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHH
Q 000861 276 FPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQL 355 (1249)
Q Consensus 276 f~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1249)
-..-++|.+-.+..|++..|-...+..|..|+..-. .+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~------------------------------------------~~ 153 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE------------------------------------------GL 153 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch------------------------------------------hH
Confidence 223378888888899998898887777777764322 11
Q ss_pred HHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCcc----ccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhh
Q 000861 356 SQL-RKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQR----QSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVC 430 (1249)
Q Consensus 356 ~~~-~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~----~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la 430 (1249)
+.+ ...+...+..++. .++..||..+++=+..++.. ..+ -.+.-+|+.++..+.+.|--||...++.+..+|
T Consensus 154 ~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELA 230 (503)
T ss_pred HHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 111 1223555666663 23668888777655554432 111 122238999999999999999999999999999
Q ss_pred cc-cChhhHHHh-HHHHHHHHccCCcHH------HHHHHHHHHHHHHhcCCCchHHH----HHHHHHhcccccCCCHHHH
Q 000861 431 FF-VGERSVEEY-LLPYIEQALSDATEA------VIVNALDCLAILCKSGYLRKRIL----LEMIERAFPLLCYPSQWVR 498 (1249)
Q Consensus 431 ~~-lG~~~~~~~-llPll~q~L~D~~e~------V~~~~l~~l~~l~~~gl~~~~~~----~~l~~~~~~ll~hpn~wiR 498 (1249)
.. -|.+.+++. +++.+...|.+.++. .+...+..+..|+.. +...+ -.++..+..++...+.-+|
T Consensus 231 ~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 231 ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred cChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 62 233333333 666666666555333 445555556555553 22222 3455566666677788899
Q ss_pred HHHHHHHHHHhhcCC
Q 000861 499 RSVVTFIAASSESLG 513 (1249)
Q Consensus 499 ~~~~~~i~~~a~~l~ 513 (1249)
..|++.+..++....
T Consensus 308 ~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHHhCCHH
Confidence 999999999986543
No 353
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.0013 Score=78.80 Aligned_cols=203 Identities=22% Similarity=0.216 Sum_probs=134.2
Q ss_pred hhHHHHHhhhccC--CCchhHHHHHHHHHHHhh--cCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccC
Q 000861 194 LIASLLCSCVRNV--KLPHYRRAAILLLKSSSL--FIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFP 269 (1249)
Q Consensus 194 ~~l~~i~s~~r~~--~~~~~r~~a~~ll~~l~~--~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~ 269 (1249)
++-.++.+.+|.+ +.-.+|+++|.+|..+.. ..-||...+-+.--+..=+.|.+|.||..|+.+|+.+-..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d----- 156 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD----- 156 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-----
Confidence 6666667777765 456678999999988887 4446777788887778888899999999999888866531
Q ss_pred CCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhcc
Q 000861 270 PSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRL 349 (1249)
Q Consensus 270 ~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1249)
..|++..|+-+
T Consensus 157 ------------------~~dee~~v~n~--------------------------------------------------- 167 (892)
T KOG2025|consen 157 ------------------PKDEECPVVNL--------------------------------------------------- 167 (892)
T ss_pred ------------------CCCCcccHHHH---------------------------------------------------
Confidence 13333333322
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhh
Q 000861 350 NADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYV 429 (1249)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~l 429 (1249)
+..|+. -|++++|||++|.+|..=. .=||.+..=+.|-+--.|.-+++.+..=
T Consensus 168 ----------------l~~liq-nDpS~EVRRaaLsnI~vdn----------sTlp~IveRarDV~~anRrlvY~r~lpk 220 (892)
T KOG2025|consen 168 ----------------LKDLIQ-NDPSDEVRRAALSNISVDN----------STLPCIVERARDVSGANRRLVYERCLPK 220 (892)
T ss_pred ----------------HHHHHh-cCCcHHHHHHHHHhhccCc----------ccchhHHHHhhhhhHHHHHHHHHHhhhh
Confidence 122221 3889999999999987633 3578899999999998888888776443
Q ss_pred hcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHhcccccCCCH-HHHHHHHHHHH
Q 000861 430 CFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKR--ILLEMIERAFPLLCYPSQ-WVRRSVVTFIA 506 (1249)
Q Consensus 430 a~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~--~~~~l~~~~~~ll~hpn~-wiR~~~~~~i~ 506 (1249)
- -+-..+.+ .-.-|++++|.|.++.|+.++...+.. |.+... .+.|++.++ --.|+ .++..+++.+-
T Consensus 221 i-d~r~lsi~-krv~LlewgLnDRe~sVk~A~~d~il~----~Wl~~~dgni~ElL~~l----dvsnss~vavk~lealf 290 (892)
T KOG2025|consen 221 I-DLRSLSID-KRVLLLEWGLNDREFSVKGALVDAILS----GWLRFSDGNILELLERL----DVSNSSEVAVKALEALF 290 (892)
T ss_pred h-hhhhhhHH-HHHHHHHHhhhhhhhHHHHHHHHHHHH----HHhhhccccHHHHHHHh----ccccchHHHHHHHHHHH
Confidence 3 22233333 445578888999999999887765543 222211 344555443 22344 67777777665
Q ss_pred H
Q 000861 507 A 507 (1249)
Q Consensus 507 ~ 507 (1249)
.
T Consensus 291 ~ 291 (892)
T KOG2025|consen 291 S 291 (892)
T ss_pred H
Confidence 5
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0039 Score=76.39 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=124.2
Q ss_pred CCCccC-CC-CcEEEEeccccCc-eeEEEEcCCCCEEEEEECCC-----cEEEEECCCCcccccccee---eEee----c
Q 000861 817 PDSGWR-PR-GILVAHLQEHCSA-VNEIAISHDHSFFVSASDDS-----TVKVWDSRKLEKDISFRSR---LTYH----L 881 (1249)
Q Consensus 817 ~~~~W~-~~-G~lv~~L~~H~~~-V~~la~spdg~~laTgs~Dg-----tVkIWD~~~~~~~~~~~~~---~t~~----~ 881 (1249)
..++|- .+ -++++-++.|... |.-+....+..+|++-+.|+ .++|||++..++..+..+. ..+. .
T Consensus 44 ~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~ 123 (933)
T KOG2114|consen 44 DGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPT 123 (933)
T ss_pred cccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCC
Confidence 345666 33 3556888888877 55555555557888877665 4999999877544322222 1111 1
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE
Q 000861 882 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST 961 (1249)
Q Consensus 882 h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs 961 (1249)
...++.+++.+.+-+.+|+|-.||.|..+.-+ ..+. .+. .........++|+.+. |..++. ..+++++
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD-i~RD-------rgs-r~~~~~~~~~pITgL~-~~~d~~--s~lFv~T 191 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGD-ILRD-------RGS-RQDYSHRGKEPITGLA-LRSDGK--SVLFVAT 191 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCc-chhc-------ccc-ceeeeccCCCCceeeE-EecCCc--eeEEEEe
Confidence 24578899999999999999999999888654 2211 121 1222233467899998 877732 1344444
Q ss_pred CCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCC
Q 000861 962 QNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQV 1029 (1249)
Q Consensus 962 ~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~ 1029 (1249)
...|.+|.+....+... ....|...+.|..+++....+++++ +..+.+||.....+...+..++.
T Consensus 192 -t~~V~~y~l~gr~p~~~-~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 192 -TEQVMLYSLSGRTPSLK-VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred -cceeEEEEecCCCccee-eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 46799999874442211 2345777889988888666455554 34799999876555555544443
No 355
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.49 E-value=0.002 Score=88.06 Aligned_cols=286 Identities=16% Similarity=0.104 Sum_probs=197.6
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHH----HHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDR----LQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPP 270 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~----l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~ 270 (1249)
.++.+...+++ .+...+..|+..|..++..- ++.+ -.-.+|+|+.||+.+.+.+|..|+.+|..+...-...
T Consensus 447 gIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi-- 522 (2102)
T PLN03200 447 GVQLLISLLGL-SSEQQQEYAVALLAILTDEV-DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI-- 522 (2102)
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH--
Confidence 56777778887 67888999999998887633 3332 2457999999999999999999999999887521110
Q ss_pred CCCcch-hhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhcc
Q 000861 271 SDAKIF-PEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRL 349 (1249)
Q Consensus 271 ~~~~if-~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1249)
..++ ..-.+|.|-.+.++.+..++...|..|..|+....
T Consensus 523 --r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-------------------------------------- 562 (2102)
T PLN03200 523 --RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-------------------------------------- 562 (2102)
T ss_pred --HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--------------------------------------
Confidence 1112 12356666666666777777666666666543211
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccc------cchhhhhhHhhhhcCCCHHHHHHHH
Q 000861 350 NADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQ------SNDFLLPILPAFLNDRDEQLRAVFY 423 (1249)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~------~~d~lLp~l~t~lnD~~w~lR~a~~ 423 (1249)
....+.+..||. .+++.++...+.-|..+...-..+. ...--||+|..++...+.+.+..-+
T Consensus 563 ----------~~~I~~Lv~LLl--sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 563 ----------AATISQLTALLL--GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred ----------hhHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence 111133455664 3457777777776655544333221 1224789999999999999998888
Q ss_pred hhhhhhhcc---cChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCch-HHHH--HHHHHhcccccCCCHHH
Q 000861 424 GQIVYVCFF---VGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRK-RILL--EMIERAFPLLCYPSQWV 497 (1249)
Q Consensus 424 ~~i~~la~~---lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~-~~~~--~l~~~~~~ll~hpn~wi 497 (1249)
..|..++.. +.......-.+|.++..|+..++.|+..+..+|..|...+--.. ..+. ..++..+.++.+++.-+
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 777777752 12233456678999999999999999999999999997433222 2222 35778888999999999
Q ss_pred HHHHHHHHHHHhhcCCccc--eeeEeeeccchhhhcCCCCc
Q 000861 498 RRSVVTFIAASSESLGAVD--SYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 498 R~~~~~~i~~~a~~l~~~d--~~~~l~P~l~~~l~~~v~~i 536 (1249)
+..++..+..+++.=.... .....+|.+-.+|+..-+..
T Consensus 711 ~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 711 AEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 9999999999987653221 33556788888998876654
No 356
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.49 E-value=0.00023 Score=75.22 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=94.9
Q ss_pred CHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCC
Q 000861 415 DEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPS 494 (1249)
Q Consensus 415 ~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn 494 (1249)
|+.+|...+-.+..+|...+.- -+..+|.+...|.|+++.||..|+..|+.|...|.+.-+. .++..++..+.++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~--ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL--VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHHHHHcCCC
Confidence 5788999999999999888643 3678999999999999999999999999999998886664 45577778889999
Q ss_pred HHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhc
Q 000861 495 QWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRR 531 (1249)
Q Consensus 495 ~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~ 531 (1249)
..||..|..++..++...++.-++..+.+++..+-..
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 9999999999999999988887877777666655443
No 357
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0012 Score=77.26 Aligned_cols=373 Identities=14% Similarity=0.178 Sum_probs=210.7
Q ss_pred CCCCCCccccccccccccccchhhHHHhHhh----hhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcc
Q 000861 115 EDVPNSTFSQDLRNSSVESSGELLQSISDAF----RKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCE 190 (1249)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1249)
||||+-.+.+.+++.-....-+.|-.+.+.+ ..-.+.--|+=..=.|+|.+-.+ ..++
T Consensus 17 RKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaL------------------g~~~ 78 (675)
T KOG0212|consen 17 RKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIAL------------------GIKD 78 (675)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHh------------------cccc
Confidence 7888888888888666555555555555544 33333333442222333333334 2222
Q ss_pred c--chhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHH--HHHhhHHHHHHhcCCCChhHHHHHH---H-------
Q 000861 191 G--IVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDED--RLQRVLPHVIAMLSDPAAIVRCAAL---E------- 256 (1249)
Q Consensus 191 ~--~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~--~l~~ilP~~~~ll~D~~~~VR~~A~---~------- 256 (1249)
+ .--++.-+..|.-+ .-.+.|+.|||-+..++..+..+. ..+.|.-.++.+..|.+..||-+|= +
T Consensus 79 ~~Y~~~iv~Pv~~cf~D-~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSD-QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHHhhHHHHHhccC-ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcc
Confidence 2 22378888999999 999999999999999999887764 4566666778888888888886551 0
Q ss_pred ------HHHHHhc----------------------cccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHH
Q 000861 257 ------TLCDILP----------------------LVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLAL 308 (1249)
Q Consensus 257 ------~l~~~l~----------------------~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~ 308 (1249)
.|..+.. .+..+|+.+---|...++|.|-....|++..||...-.++..+
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f-- 235 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF-- 235 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH--
Confidence 0111111 1122232222223334677777777889888986655555443
Q ss_pred HHHHHHHHHHHhhhcc-cccccCCCCCCCCCCCcchhhhhccchhHHHHH----------------HHHHHHHHHHHHhc
Q 000861 309 TAYGFLVHSIRLSEAG-VLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQ----------------LRKSIAEVVQELVM 371 (1249)
Q Consensus 309 ~a~rf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~Ll~ 371 (1249)
+.-.+. +..+ .++.... .-.....+. +++++. +.-.+..++..+|.
T Consensus 236 -----L~eI~s-~P~s~d~~~~i~---------vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 236 -----LAEIRS-SPSSMDYDDMIN---------VLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILP 298 (675)
T ss_pred -----HHHHhc-CccccCcccchh---------hccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence 211110 0000 0000000 000000111 112221 01112222222221
Q ss_pred C-CCCCH-HHHHHHHH-h--chhhhhh--cCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhH--HHhH
Q 000861 372 G-PKQTP-SIRRALLQ-D--IGNLCSF--FGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSV--EEYL 442 (1249)
Q Consensus 372 ~-~D~~~-~Vr~all~-~--i~~l~~f--~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~--~~~l 442 (1249)
- .|.++ ..|-.... | +..+|.- .|.+..-..|+.-+..|+.|....-|.+..+-|..+-.-.+.+-+ ...|
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i 378 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI 378 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH
Confidence 0 14443 23333222 2 4444322 233322237888889999999999999999999999888877644 3568
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEee
Q 000861 443 LPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLA 522 (1249)
Q Consensus 443 lPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~ 522 (1249)
.+-++..|+|+...|+..++.-+..+|...- ......++...+.+....+...+.-...+|-.++-.|+++-+|-.+-
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~--~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASICSSSN--SPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhcCcc--cccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 8999999999999999999999999998611 11223344444555454555555555556666677777776666555
Q ss_pred eccch
Q 000861 523 PVIRP 527 (1249)
Q Consensus 523 P~l~~ 527 (1249)
-++..
T Consensus 457 ~ILe~ 461 (675)
T KOG0212|consen 457 DILER 461 (675)
T ss_pred HHHhc
Confidence 55544
No 358
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0039 Score=80.60 Aligned_cols=337 Identities=17% Similarity=0.123 Sum_probs=202.5
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCC--hH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHH--------
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFID--DE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDI-------- 261 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~--de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~-------- 261 (1249)
+|+..+.+.+-+ ..++.|.++|--|+.+-++++ .| ..+..|.--|+++|.|+..-++-.|.+.|.-+
T Consensus 818 ~~~~~l~~~~~s-~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTS-PNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 577778777777 889999999999999999998 23 36678889999999999888888887665311
Q ss_pred --------hccccccC------CCCCcchhhchhhhccCCCCCCc-----hh-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000861 262 --------LPLVRNFP------PSDAKIFPEYILPMLSMLPDDPE-----ES-VRICYASNIAKLALTAYGFLVHSIRLS 321 (1249)
Q Consensus 262 --------l~~v~~~~------~~~~~if~eyilP~l~~l~~D~~-----~~-VR~~~A~~l~~LA~~a~rf~~~~~~~~ 321 (1249)
+..+..-. ..|..+|-+=.|- ..|. .+ =-+.+|+-+++=+ ..+||..++..-+
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg------~Tp~Gg~isTYKELc~LASdl~qPd-LVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLG------KTPDGGKISTYKELCNLASDLGQPD-LVYKFMQLANHNA 969 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCC------CCCCCCcchHHHHHHHHHhhcCChH-HHHHHHHHhhhhc
Confidence 11111000 0022333322211 1111 00 1123333332211 3577888765322
Q ss_pred hcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHh---chhhhhh
Q 000861 322 EAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVM----GP-KQTPSIRRALLQD---IGNLCSF 393 (1249)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~----~~-D~~~~Vr~all~~---i~~l~~f 393 (1249)
.. +... -..|........-.+.+.|.+-+|.- .+ |+++.|+.|+..= |..=-+-
T Consensus 970 ~w---nSk~---------------GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~ 1031 (1702)
T KOG0915|consen 970 TW---NSKK---------------GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKK 1031 (1702)
T ss_pred hh---hccc---------------chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHH
Confidence 10 0000 01122223333344556666555541 11 8899999988752 1110000
Q ss_pred cCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHc---cCCcHHHHHHHHHHHHHHHh
Q 000861 394 FGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQAL---SDATEAVIVNALDCLAILCK 470 (1249)
Q Consensus 394 ~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L---~D~~e~V~~~~l~~l~~l~~ 470 (1249)
.=.+-.|+ ||--|.--+.++.||||.|-.-++-.+-.--..+-+.+.+.-+.++++ -|--|.||+++-...+.|.+
T Consensus 1032 ~vd~y~ne-Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1032 VVDEYLNE-ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112233 666666677889999999988877777655555566677888877775 47789999988777666655
Q ss_pred c-----CCCchHHHHHHHHHhcccccCC-----CHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCcCCHH
Q 000861 471 S-----GYLRKRILLEMIERAFPLLCYP-----SQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASLASVK 540 (1249)
Q Consensus 471 ~-----gl~~~~~~~~l~~~~~~ll~hp-----n~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~~ 540 (1249)
+ .......-.+++..++|++.++ -.=||..++..+..+++.-|. .|+||+-+=||.
T Consensus 1111 l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~---------~lkP~~~~LIp~----- 1176 (1702)
T KOG0915|consen 1111 LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK---------ELKPHFPKLIPL----- 1176 (1702)
T ss_pred HHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh---------hhcchhhHHHHH-----
Confidence 3 1112223347888899998876 567999999999999999887 566666555553
Q ss_pred HHHhccCCCCcHHHHHHHHHhhcch--hHHHHHhh
Q 000861 541 ALLSCLKPPVSREVFYQVLENARSS--DMLERQRK 573 (1249)
Q Consensus 541 ~ll~~l~~PlsR~vf~~~~~~~~~~--~~l~~~~~ 573 (1249)
|-.+-.++.-+|.+++...+... +.++.+|.
T Consensus 1177 --ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1177 --LLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred --HHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33345667777777765545332 23566663
No 359
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.47 E-value=0.0024 Score=70.34 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccc--cchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhH
Q 000861 361 SIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQ--SNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSV 438 (1249)
Q Consensus 361 ~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~--~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~ 438 (1249)
.+...+...+ .|..+.|-+..+.-+..|+..+|... ..+.++|.|+..+.|++..+|.+--+.+-.++..++. .
T Consensus 53 ~~~~~i~~~l--~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~ 128 (228)
T PF12348_consen 53 QLLDAIIKQL--SDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--S 128 (228)
T ss_dssp ---HHHHH-S---HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---
T ss_pred HhHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--H
Confidence 3334555555 25556677777777888888888763 4578999999999999999999999999999999882 1
Q ss_pred HHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-C----CCchH-HHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcC
Q 000861 439 EEYLLPYIEQALSDATEAVIVNALDCLAILCKS-G----YLRKR-ILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 439 ~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~-g----l~~~~-~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l 512 (1249)
...+++++.+++.+....||..+++.|..+++. + .+.+. .+-.+++.+..++.+++.-||.++-..+..+.+..
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 245699999999999999999999999999886 4 12222 24578899999999999999999999999998887
Q ss_pred Cc--cceeeEeeeccchhh
Q 000861 513 GA--VDSYVFLAPVIRPFL 529 (1249)
Q Consensus 513 ~~--~d~~~~l~P~l~~~l 529 (1249)
|. ..++..|-|-++.+|
T Consensus 209 ~~~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 209 PERAESILSMLDPNIQKYL 227 (228)
T ss_dssp -HHH---------------
T ss_pred CHhhccchhcchhcccccC
Confidence 64 334444555555443
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0016 Score=78.78 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=81.8
Q ss_pred EEEEEEecCCCCCccEEEEEE----CCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC
Q 000861 941 IVTLVNYNTDNCASHMFMYST----QNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR 1016 (1249)
Q Consensus 941 V~~l~~fs~d~~~g~~L~sgs----~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr 1016 (1249)
+..+..|+|. ..++++++ ..|.|.|| ..+|++......+ -.++++||+|..-.|+.|-..|.+.+|...
T Consensus 17 vsti~SWHPs---ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPS---EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCC---CceeEEEEecCCCCceEEEE-ecCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecC
Confidence 4444446666 44666554 35778877 3566654444332 236789999999899999999999999986
Q ss_pred CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1017 FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1017 ~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+.+. .+....|..+|..+.| +++|. .++++..-|.+.+|...
T Consensus 90 ~~e~-htv~~th~a~i~~l~w-S~~G~---------~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTET-HTVVETHPAPIQGLDW-SHDGT---------VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Ccee-eeeccCCCCCceeEEe-cCCCC---------eEEEcCCCceeEEEEee
Confidence 5443 3445568999999999 99998 88888888999999876
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.051 Score=58.33 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=135.8
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE-EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 847 HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL-CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 847 g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~-sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
|.+++.|...|.+.+-+..+++.... +..... |. .....+++..+..|+.|++.+..|.... +
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~------f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~----~----- 126 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWN------FVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY----G----- 126 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheee------eeehhh-hccceEEcCCCceEEEecCCCcEEEeccccc----c-----
Confidence 67899999999999999999975322 222111 22 2234568889999999999999988711 1
Q ss_pred cCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC--ccceeeecCCCCCceEE--EEEcCCCCEE
Q 000861 926 SGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN--SNTWTLKAIPEEGYVSS--LVTGPCGNWF 1001 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~--~~~~~l~~~~h~~~I~s--l~~spdg~~L 1001 (1249)
.+.+.+...+...+-+ ..+. ...|+.++..|.+..-...+. ...|.... .++|.+ ++. +..+
T Consensus 127 ----cVykskcgG~~f~sP~-i~~g---~~sly~a~t~G~vlavt~~~~~~~~~w~~~~---~~PiF~splcv---~~sv 192 (354)
T KOG4649|consen 127 ----CVYKSKCGGGTFVSPV-IAPG---DGSLYAAITAGAVLAVTKNPYSSTEFWAATR---FGPIFASPLCV---GSSV 192 (354)
T ss_pred ----eEEecccCCceeccce-ecCC---CceEEEEeccceEEEEccCCCCcceehhhhc---CCccccCceec---cceE
Confidence 2222222222222222 4453 225667777787777766655 33333321 233322 122 3456
Q ss_pred EEEecCCcEEEEeCCCCCcccccccCCCCCeeEE-EEEcCCCCCcccCCCCCEEEEEECC--------CeEEEEECCCCc
Q 000861 1002 VSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM-CLFVPPPNAAVSTTARPLIYVAAGC--------NEVSLWNAENGS 1072 (1249)
Q Consensus 1002 ~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l-~~~sp~g~~~~~~~~~~~l~t~s~D--------g~I~vWDl~tg~ 1072 (1249)
..++-||.+.-+| .+|+.+..+ ...++|..= +..+|..+ .++.+..+ ..--+|..++|.
T Consensus 193 ~i~~VdG~l~~f~-~sG~qvwr~--~t~GpIf~~Pc~s~Ps~q---------~i~~~~~~Cf~~~~p~~ghL~w~~~~g~ 260 (354)
T KOG4649|consen 193 IITTVDGVLTSFD-ESGRQVWRP--ATKGPIFMEPCESRPSCQ---------QISLENENCFCAPLPIAGHLLWATQSGT 260 (354)
T ss_pred EEEEeccEEEEEc-CCCcEEEee--cCCCceecccccCCCcce---------EEEEecCCeEEEeccccceEEEEecCCc
Confidence 6677788877777 466555432 234443221 00012211 22222222 234577777776
Q ss_pred eeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccc-ccccccccCCCCCCCCCeEEEeec------C---CCeE
Q 000861 1073 CHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN-QKYRVDELNEPPPRLLGIRSLLPL------P---GGDL 1142 (1249)
Q Consensus 1073 ~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~V~sl~~s------p---dg~L 1142 (1249)
...++...+-+-+..-...+ .+......+.||+.... ..-.+-+.....+....+.++-.+ | +|.|
T Consensus 261 t~~vy~~p~l~F~~h~~~~S----~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl 336 (354)
T KOG4649|consen 261 TLHVYLSPKLRFDLHSPGIS----YPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRL 336 (354)
T ss_pred EEEEEeCcccceeccCCCCc----chhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEEccEE
Confidence 55555432111100000000 01112233445554433 111122223333333445444322 2 4688
Q ss_pred EEEeCCCcEEEEeCCCC
Q 000861 1143 LTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1143 ~tgs~Dg~IriWDl~~~ 1159 (1249)
+.|+.|..++.||+.+.
T Consensus 337 ~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 337 LIGCRDDYVRCLDLDTW 353 (354)
T ss_pred EEEEccCeEEEEecccc
Confidence 99999999999999764
No 362
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.43 E-value=0.0028 Score=75.24 Aligned_cols=151 Identities=16% Similarity=0.087 Sum_probs=104.5
Q ss_pred hhHHHHHHhc-CCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 000861 234 RVLPHVIAML-SDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYG 312 (1249)
Q Consensus 234 ~ilP~~~~ll-~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~r 312 (1249)
..++.++..| .|+.++|+++|+..+-..-. .-.+..|.....|+.+.||.+.|+.|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--------------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--------------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----
Confidence 3467777777 57889999988776642211 0124555566678888899999988865411
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhh
Q 000861 313 FLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCS 392 (1249)
Q Consensus 313 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~ 392 (1249)
....+.+..+| +|.+|.||.+.+.-+..
T Consensus 116 -----------------------------------------------~~a~~~L~~~L--~~~~p~vR~aal~al~~--- 143 (410)
T TIGR02270 116 -----------------------------------------------RQAEPWLEPLL--AASEPPGRAIGLAALGA--- 143 (410)
T ss_pred -----------------------------------------------hHHHHHHHHHh--cCCChHHHHHHHHHHHh---
Confidence 23334566677 47789999888844333
Q ss_pred hcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000861 393 FFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAIL 468 (1249)
Q Consensus 393 f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l 468 (1249)
.+. + -.+.++++|+|.+..||.+-+..+..+. . ...+|.+..+|.|.++.||..++..|..+
T Consensus 144 -r~~----~-~~~~L~~~L~d~d~~Vra~A~raLG~l~----~----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 -HRH----D-PGPALEAALTHEDALVRAAALRALGELP----R----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -hcc----C-hHHHHHHHhcCCCHHHHHHHHHHHHhhc----c----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 332 2 3467888889999999998888776554 2 24566677889999999999999888554
No 363
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.43 E-value=0.0016 Score=76.25 Aligned_cols=187 Identities=21% Similarity=0.230 Sum_probs=140.2
Q ss_pred hhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 000861 234 RVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGF 313 (1249)
Q Consensus 234 ~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf 313 (1249)
..++++..++.|++..||..|...+..+-. +..+|.+..+..|.++.||-..+.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------------EEAVPLLRELLSDEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----
Confidence 467888999999999999999998554432 3478999999999999999988886554421
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh
Q 000861 314 LVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF 393 (1249)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f 393 (1249)
+.-.+.+..++. .|.+..||.+....|..+-..
T Consensus 104 ----------------------------------------------~~a~~~li~~l~-~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 104 ----------------------------------------------PEAVPPLVELLE-NDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred ----------------------------------------------hhHHHHHHHHHH-cCCcHhHHHHHHHHHHhcCch
Confidence 223334455553 278899999998887765433
Q ss_pred cCccccchhhhhhHhhhhcCCC------------HHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHH
Q 000861 394 FGQRQSNDFLLPILPAFLNDRD------------EQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNA 461 (1249)
Q Consensus 394 ~G~~~~~d~lLp~l~t~lnD~~------------w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~ 461 (1249)
- . +.-++..++|.. |.+|.+..+.+..+. ++...|.+.+.|.|++..||.++
T Consensus 137 ~----a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--------~~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 137 R----A----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG--------DPEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred h----h----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC--------ChhhhHHHHHHHhCchHHHHHHH
Confidence 2 2 445566666644 577887777766554 35667889999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHh
Q 000861 462 LDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASS 509 (1249)
Q Consensus 462 l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a 509 (1249)
...|..+.... .++.+.+..++.++++-+|..++..+..+.
T Consensus 201 a~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 201 ASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 99999987743 357788899999999999999988765544
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.42 E-value=0.032 Score=68.94 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=115.1
Q ss_pred CEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE--EEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccc
Q 000861 848 SFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL--CTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKY 925 (1249)
Q Consensus 848 ~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~--sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~ 925 (1249)
..+..++.++.|.-.|..+++..-.++.......+...+. .+... ++..++.++.+|.|..+|.+ +|+.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~-----TG~~--- 132 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE-----TGKQ--- 132 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC-----CCCE---
Confidence 3455677789999999988875433221110000000010 11111 22578888889999999987 3443
Q ss_pred cCccceeeecCCCC-----cEEE-EEEecCCCCCccEEEEEE---------CCCeEEEEEcCCCccceeeecCCCC----
Q 000861 926 SGISDIKKKDTKEG-----AIVT-LVNYNTDNCASHMFMYST---------QNCGIHLWDTRSNSNTWTLKAIPEE---- 986 (1249)
Q Consensus 926 ~~~~~i~~l~~h~~-----~V~~-l~~fs~d~~~g~~L~sgs---------~dg~I~iwDlrt~~~~~~l~~~~h~---- 986 (1249)
+-..+.... .+.+ .. +.. ..++.++ .+|.+..+|..+|+..|..+.....
T Consensus 133 -----~W~~~~~~~~~~~~~i~ssP~-v~~-----~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~ 201 (488)
T cd00216 133 -----VWKFGNNDQVPPGYTMTGAPT-IVK-----KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF 201 (488)
T ss_pred -----eeeecCCCCcCcceEecCCCE-EEC-----CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence 111111000 0111 11 111 2455543 3688999999999999988652111
Q ss_pred --------------Cce-EEEEEcCCCCEEEEEecCC------------------cEEEEeCCCCCcccccccCCCC-C-
Q 000861 987 --------------GYV-SSLVTGPCGNWFVSGSSRG------------------VLTLWDLRFLVPVNSWQYSQVC-P- 1031 (1249)
Q Consensus 987 --------------~~I-~sl~~spdg~~L~sgs~dG------------------~I~lWDlr~~~~l~s~~~~~~~-~- 1031 (1249)
+.+ .+.++++.+..++.++.++ .|.-+|..+++.+..++..+.. .
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcc
Confidence 001 1345666677888888776 6999999999988776532211 0
Q ss_pred --e-eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1032 --I-EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1032 --I-~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
. ....+ .+... ........+++++.+|.+...|.++|+.+-...
T Consensus 282 ~~~~s~p~~-~~~~~--~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 282 YDGPNQPSL-ADIKP--KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred cccCCCCeE-Eeccc--cCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 0 00111 10000 000012367888889999999999998766554
No 365
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.39 E-value=0.00054 Score=66.67 Aligned_cols=109 Identities=21% Similarity=0.126 Sum_probs=90.1
Q ss_pred hhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcc---cChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchH
Q 000861 401 DFLLPILPAFLNDRDEQLRAVFYGQIVYVCFF---VGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKR 477 (1249)
Q Consensus 401 d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~---lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~ 477 (1249)
.-++|++++++.|.+|.+|...+..+..++.. .-...++.-++|.+.+.|.|+.+.|+..++.+|..|++.+--...
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34889999999999999999999999999864 333444458999999999999999999999999999986432222
Q ss_pred HHH--HHHHHhcccccCCCHHHHHHHHHHHHHHh
Q 000861 478 ILL--EMIERAFPLLCYPSQWVRRSVVTFIAASS 509 (1249)
Q Consensus 478 ~~~--~l~~~~~~ll~hpn~wiR~~~~~~i~~~a 509 (1249)
.+. .+++.++.++.+++..+|..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 36888889999999999999999998775
No 366
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0038 Score=77.73 Aligned_cols=243 Identities=18% Similarity=0.125 Sum_probs=157.9
Q ss_pred chhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCC
Q 000861 192 IVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPS 271 (1249)
Q Consensus 192 ~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~ 271 (1249)
+-.+.+=|..++- .+-.+.|+-+=.-+..+++.=+++.+ ..++.+++=++|+.+.+|+.|+|+++.+=
T Consensus 53 mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~kDl~d~N~~iR~~AlR~ls~l~--------- 120 (757)
T COG5096 53 MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQKDLQDPNEEIRGFALRTLSLLR--------- 120 (757)
T ss_pred hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHhhccCCCHHHHHHHHHHHHhcC---------
Confidence 4445555555555 37777777766666666666665554 56888999999999999999999988543
Q ss_pred CCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccch
Q 000861 272 DAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNA 351 (1249)
Q Consensus 272 ~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1249)
..-+.++++|.++.+.+|++.+||-..|-|+..|-..-.+ +
T Consensus 121 -~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l----------------------------------- 161 (757)
T COG5096 121 -VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---L----------------------------------- 161 (757)
T ss_pred -hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---h-----------------------------------
Confidence 2356688999999999999999999999999888543221 1
Q ss_pred hHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhh
Q 000861 352 DVQLSQLRKS-IAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVC 430 (1249)
Q Consensus 352 ~~~~~~~~~~-l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la 430 (1249)
.++. +..+...|+ .|++|.|.++++..+..++.- ...+ .+..++..|+.+-
T Consensus 162 ------~~~~g~~~~l~~l~--~D~dP~Vi~nAl~sl~~i~~e--------~a~~------------~~~~~~~~i~~l~ 213 (757)
T COG5096 162 ------YHELGLIDILKELV--ADSDPIVIANALASLAEIDPE--------LAHG------------YSLEVILRIPQLD 213 (757)
T ss_pred ------hhcccHHHHHHHHh--hCCCchHHHHHHHHHHHhchh--------hhhh------------HHHHHHHHhhhcc
Confidence 1122 333445566 489999999999988877743 1111 1222333333332
Q ss_pred cccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhh
Q 000861 431 FFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 431 ~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~ 510 (1249)
...+..+ .+.++...++.|......-.- ....+...+.+...|+|.-+=..++..|..+..
T Consensus 214 ~~~~~~~----------------~~~~~~~~le~L~~~~~~~~~---s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~ 274 (757)
T COG5096 214 LLSLSVS----------------TEWLLLIILEVLTERVPTTPD---SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLV 274 (757)
T ss_pred chhhhhh----------------HHHHHHHHHHHHHccCCCCCC---cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhh
Confidence 2222111 234444444444443332111 223566777788888888888888888888887
Q ss_pred cCCccceeeEeeeccchhhhcC
Q 000861 511 SLGAVDSYVFLAPVIRPFLRRQ 532 (1249)
Q Consensus 511 ~l~~~d~~~~l~P~l~~~l~~~ 532 (1249)
.+...-.+.++.|.+..++..+
T Consensus 275 ~~~~~~~~~~~~~~l~~Ll~~~ 296 (757)
T COG5096 275 FLPSNNLFLISSPPLVTLLAKP 296 (757)
T ss_pred hhccccHHHhhccHHHHHHcCC
Confidence 7776666666667666666655
No 367
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00015 Score=87.46 Aligned_cols=199 Identities=11% Similarity=0.080 Sum_probs=126.3
Q ss_pred cceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC
Q 000861 929 SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG 1008 (1249)
Q Consensus 929 ~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG 1008 (1249)
...+.+..+....+|++ |+.+ .++|+.|+..|.|++|++.+|...... ..|.+.|+-+.-+.+|..+++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~a-fs~~---~~hL~vG~~~Geik~~nv~sG~~e~s~--ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIA-FSGG---TNHLAVGSHAGEIKIFNVSSGSMEESV--NCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEE-eecC---CceEEeeeccceEEEEEccCccccccc--cccccccccccccCCcceeeeecccc
Confidence 34556666777788888 9988 679999999999999999999887666 45999999999999998777665433
Q ss_pred --cEEEEeCC-CCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCC
Q 000861 1009 --VLTLWDLR-FLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGD 1085 (1249)
Q Consensus 1009 --~I~lWDlr-~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~ 1085 (1249)
-..+|++. .+.+..++.. -.++.| +.... .-+.|+......+||++++....++-.......
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e-----d~~vkF-sn~~q---------~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE-----DKAVKF-SNSLQ---------FRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred CchHHHhccccccCccccccc-----cceeeh-hhhHH---------HHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 47899986 4556666543 235666 44333 335555567799999999988777543222122
Q ss_pred CCcccccccccCCCCCCCCCccccccccccccccccCCCCC-----CCCCeEEEeecCCC-eEEEEeCCCcEEEEeCCCC
Q 000861 1086 TEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPP-----RLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSP 1159 (1249)
Q Consensus 1086 ~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~-----~~~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~ 1159 (1249)
..-+.. .|+++..++ .++..+|+...+.. ...--..-.|+|.| .++.-+ -|||+.+.
T Consensus 1231 y~~n~a-----------~FsP~D~LI-lndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1231 YSNNLA-----------HFSPCDTLI-LNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred hhcccc-----------ccCCCcceE-eeCceeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHH
Confidence 122233 334444433 23334454433311 00111223577888 554443 48998876
Q ss_pred CccEEE
Q 000861 1160 GRSYCI 1165 (1249)
Q Consensus 1160 ~~~~~l 1165 (1249)
...+.+
T Consensus 1294 ~lLh~V 1299 (1516)
T KOG1832|consen 1294 KLLHSV 1299 (1516)
T ss_pred HHHhcC
Confidence 665544
No 368
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.022 Score=68.83 Aligned_cols=123 Identities=11% Similarity=0.157 Sum_probs=88.8
Q ss_pred ccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 834 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 834 H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
|...|.=-+++..+++++.|+.-|.+.+|+-..++.. .....+..+.+...+.+++..++|.|+..|.|.++-+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-----~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-----KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-----cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 3344555566677889999999999999998887631 22333344556677788888888889999999999887
Q ss_pred ccccCCCccccccCccceeeec-CCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 914 HISRGLGNVEKYSGISDIKKKD-TKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~-~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
. .. .+.. . .+...+ .|...|++++ |+++ +..+++|...|+|..-.+.+
T Consensus 107 ~-~~-p~~~-~-----~~t~~d~~~~~rVTal~-Ws~~---~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 K-EL-PRDL-D-----YVTPCDKSHKCRVTALE-WSKN---GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred c-cC-CCcc-e-----eeccccccCCceEEEEE-eccc---ccEEeecCCCceEEEEEech
Confidence 2 21 1111 1 111122 2678899998 9999 88999999999999988776
No 369
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.025 Score=72.14 Aligned_cols=198 Identities=9% Similarity=0.072 Sum_probs=112.6
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
+.|.++.|..++.-++.+..+|.|.+-|..+... .....-..+|.+++|+||+..++..+.++++.+-+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-- 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-- 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--
Confidence 5799999999999888899999999998887652 1222234579999999999999999998888775543
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
-.+ -....+..-....+....+. |-... .-+-| ..|.....+....+.. +......+.=++++|-
T Consensus 140 ----f~~---i~E~~L~~d~~~~sk~v~VG-wGrke----Tqfrg-s~gr~~~~~~~~~ek~--~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 140 ----FEP---IAEKPLDADDERKSKFVNVG-WGRKE----TQFRG-SEGRQAARQKIEKEKA--LEQIEQDDHKTSISWR 204 (1265)
T ss_pred ----ccc---hhccccccccccccccceec-ccccc----eeeec-chhhhccccccccccc--ccchhhccCCceEEEc
Confidence 000 00000000000112222333 32220 11111 1122222221111110 0000122334678999
Q ss_pred CCCCEEEE-----EecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC---CCeEEEEE
Q 000861 996 PCGNWFVS-----GSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG---CNEVSLWN 1067 (1249)
Q Consensus 996 pdg~~L~s-----gs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~---Dg~I~vWD 1067 (1249)
-||.++++ .+....+++||-. | .+.+...+..+--.+++| -|.|. ++++... |+.|.+|.
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsW-kPsgs---------~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSW-KPSGS---------LIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceee-cCCCC---------eEeeeeecCCCCcEEEEe
Confidence 99999988 3333789999976 2 333333333444568999 99887 6665543 55688887
Q ss_pred CC
Q 000861 1068 AE 1069 (1249)
Q Consensus 1068 l~ 1069 (1249)
-.
T Consensus 273 rN 274 (1265)
T KOG1920|consen 273 RN 274 (1265)
T ss_pred cC
Confidence 43
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.05 Score=65.41 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=111.5
Q ss_pred CCccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeE---eeccCCceEEEEEecC
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT---YHLEGSRALCTMMLRH 894 (1249)
Q Consensus 818 ~~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t---~~~h~~~V~sl~fspd 894 (1249)
..+++..|+++.++.-..+.|.++.|+.+. .|+.-..||+++++|+.... .+..... .......+.+..+..+
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCC
Confidence 667889999999987666999999999865 45566789999999986332 1110001 1111222333344445
Q ss_pred CCEEEEEeCCCeEEEEEccccccCCCccccccCc-cceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC
Q 000861 895 SAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGI-SDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS 973 (1249)
Q Consensus 895 g~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~-~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt 973 (1249)
| ++.-..++.+.+ +...... -...+.... .......... ....+..+..+ ....+....++.+.+.|-..
T Consensus 139 G--ivvLt~~~~~~~--v~n~~~~-~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~~---~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 139 G--IVVLTGNNRFYV--VNNIDEP-VKLRRLPEIPGLWTKFHWWP-SWTVIPLLSSD---RVVEILLANGETIYIIDENS 209 (410)
T ss_pred C--EEEECCCCeEEE--EeCcccc-chhhccccCCCccccccccc-ccccceEeecC---cceEEEEecCCEEEEEEccc
Confidence 5 222233444433 3311100 000000000 0000000011 11111113344 33455555666777555433
Q ss_pred CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 974 NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 974 ~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
.+. +. ..+.+..+++||+|++++.-+.+|.+.+.+..+.+.+..+..+.......+.|
T Consensus 210 ~~~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W 267 (410)
T PF04841_consen 210 FKQ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW 267 (410)
T ss_pred ccc---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence 211 21 25789999999999999999999999999988887776666554456677777
No 371
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.23 E-value=0.00071 Score=63.38 Aligned_cols=84 Identities=27% Similarity=0.434 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCC
Q 000861 211 YRRAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLP 288 (1249)
Q Consensus 211 ~r~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~ 288 (1249)
.|..++--|.+++..++.. ..++.|+|.++..+.|++++||.+|+++|..+.+..... .-.+-+-|++.|.+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4677777788887777765 578999999999999999999999999999999876531 1012234888999999
Q ss_pred CCCchhHHHH
Q 000861 289 DDPEESVRIC 298 (1249)
Q Consensus 289 ~D~~~~VR~~ 298 (1249)
.|+++.||.+
T Consensus 78 ~D~d~~Vr~~ 87 (97)
T PF12755_consen 78 ADPDENVRSA 87 (97)
T ss_pred cCCchhHHHH
Confidence 9999999976
No 372
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.22 E-value=0.0027 Score=74.80 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=163.1
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHh-cCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhc
Q 000861 201 SCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAM-LSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEY 279 (1249)
Q Consensus 201 s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~l-l~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~ey 279 (1249)
--++| --.+.|..++.+|..=+...+.+...++++|.++.. |+|.+ |-.-++.|-.+|.-+... ..-|...
T Consensus 175 LkvKN-G~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl----~~pyvhk 246 (975)
T COG5181 175 LKVKN-GGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDL----KVPYVHK 246 (975)
T ss_pred hhccc-CCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhcccc----cccceee
Confidence 34667 678899999999999999999999999999999987 56654 444555566666655543 2245667
Q ss_pred hhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHH
Q 000861 280 ILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLR 359 (1249)
Q Consensus 280 ilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1249)
||=.+..|.-|++..+|++=-+.|..|+..++ |-.+...+
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~G-l~~~vs~m--------------------------------------- 286 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCG-LGFSVSSM--------------------------------------- 286 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhc-cceeeeec---------------------------------------
Confidence 88888999999999999998888888888877 11110000
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCC-CHHHHHHHHhhhhhhhcccChhhH
Q 000861 360 KSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDR-DEQLRAVFYGQIVYVCFFVGERSV 438 (1249)
Q Consensus 360 ~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~-~w~lR~a~~~~i~~la~~lG~~~~ 438 (1249)
.|-+ ...++-||-..-.-.+-++..||.+ .+||+|..+...+ .|+-|-.-+..+-.||.++|..-+
T Consensus 287 ---rpDi------~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l 353 (975)
T COG5181 287 ---RPDI------TSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRL 353 (975)
T ss_pred ---cCCc------ccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHH
Confidence 0000 0234567766666677888888875 4889999999987 999999999999999999997655
Q ss_pred H--HhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CCCchH
Q 000861 439 E--EYLLPYIEQALSDATEAVIVNALDCLAILCKS-GYLRKR 477 (1249)
Q Consensus 439 ~--~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~-gl~~~~ 477 (1249)
. .-|+-|+-.+|.|...+||.-+.++|..|+|. |-..-.
T Consensus 354 ~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie 395 (975)
T COG5181 354 SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE 395 (975)
T ss_pred hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH
Confidence 2 23555677889999999999999999999997 444433
No 373
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.0024 Score=67.53 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=91.9
Q ss_pred CHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcH
Q 000861 376 TPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATE 455 (1249)
Q Consensus 376 ~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e 455 (1249)
+|.||.+++-.++.||..++ ...|-.+|++...|+|+++.||..-+..+..+.. -|...+...++.-+...|.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~-~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL-EDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCceeehhhhhHHHHHHHcCCCH
Confidence 47999999999999999996 4668889999999999999999988888877764 35556667787888899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCC
Q 000861 456 AVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYP 493 (1249)
Q Consensus 456 ~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hp 493 (1249)
.|+..|..++.++.... .+..+++.++.++.-+.++
T Consensus 78 ~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKR--NPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhCc
Confidence 99999999999987742 3455666666666555443
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.19 E-value=0.00023 Score=83.95 Aligned_cols=202 Identities=14% Similarity=0.236 Sum_probs=126.1
Q ss_pred eeEEEEcCC--CCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEe----CCCeEEEE
Q 000861 838 VNEIAISHD--HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGA----CDGIIHMF 910 (1249)
Q Consensus 838 V~~la~spd--g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs----~Dg~I~vw 910 (1249)
+.|+++.-+ ...++.|..+|.|-+-........ +.....+|....++++|.+ |.+.||+|- .|..+.||
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 445554433 346788889999988877665421 2345566778899999998 566777763 36789999
Q ss_pred EccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcc-ceeeecCCCCCce
Q 000861 911 SVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIPEEGYV 989 (1249)
Q Consensus 911 dv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~h~~~I 989 (1249)
|+...-....+-..+.+ +......+++ |..+ .+.+++|.....++++|+|.... ...+ ....+
T Consensus 135 di~s~ltvPke~~~fs~--------~~l~gqns~c-wlrd---~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~v 198 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS--------STLDGQNSVC-WLRD---TKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYV 198 (783)
T ss_pred ecccccCCCcccccccc--------ccccCccccc-cccC---cchhhcccccchhhhhhhhhhhhhhhhh----hhhhc
Confidence 99821000000011111 0112233555 6665 67888999999999999994322 2222 23456
Q ss_pred EEEEEcC-CCCEEEEEecCCcEEEEe-CCC-CCcccccccC---CCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCe
Q 000861 990 SSLVTGP-CGNWFVSGSSRGVLTLWD-LRF-LVPVNSWQYS---QVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNE 1062 (1249)
Q Consensus 990 ~sl~~sp-dg~~L~sgs~dG~I~lWD-lr~-~~~l~s~~~~---~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~ 1062 (1249)
..+.++| .++++++-. ||.|.+|| .+. ..++..+... ....+..++| .|... ..+++... .++
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay-cPtrt--------glla~l~RdS~t 268 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY-CPTRT--------GLLAVLSRDSIT 268 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe-ccCCc--------chhhhhccCcce
Confidence 6778889 677777655 99999999 443 3344443321 1224889999 77654 24566655 468
Q ss_pred EEEEECC
Q 000861 1063 VSLWNAE 1069 (1249)
Q Consensus 1063 I~vWDl~ 1069 (1249)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999985
No 375
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.003 Score=77.53 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhh-hhcCCCH---HHHHHHHhhhhhhhcccCh
Q 000861 360 KSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPA-FLNDRDE---QLRAVFYGQIVYVCFFVGE 435 (1249)
Q Consensus 360 ~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t-~lnD~~w---~lR~a~~~~i~~la~~lG~ 435 (1249)
+.++.++.+.| +|.++-|=.+.++.+..||.. -++.|||-+.+ |+|.++. .-|+-+=|+|..++.-.|.
T Consensus 767 ekvl~i~ld~L--kdedsyvyLnaI~gv~~Lcev-----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge 839 (982)
T KOG4653|consen 767 EKVLAIALDTL--KDEDSYVYLNAIRGVVSLCEV-----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE 839 (982)
T ss_pred HHHHHHHHHHh--cccCceeeHHHHHHHHHHHHh-----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc
Confidence 67888999999 588999999999999999988 46779999998 7776422 2344445999999999997
Q ss_pred hhHH--HhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHhh
Q 000861 436 RSVE--EYLLPYIEQALSDATEAVIVNALDCLAILCKS--GYLRKRILLEMIERAFPLLC-YPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 436 ~~~~--~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--gl~~~~~~~~l~~~~~~ll~-hpn~wiR~~~~~~i~~~a~ 510 (1249)
-++. +-|+-+|+.+..||+..-|...+.+|..||+. +..+. .+-|.+..++.+.. +-...+|.||+.+|..+-.
T Consensus 840 l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 840 LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 7653 34788899999999999999999999999997 33333 55566666666544 5578899999999999998
Q ss_pred cCCccceeeEeeeccchhhhc
Q 000861 511 SLGAVDSYVFLAPVIRPFLRR 531 (1249)
Q Consensus 511 ~l~~~d~~~~l~P~l~~~l~~ 531 (1249)
.+| ..++|+++-++.|
T Consensus 919 ~tg-----~dlLpilr~~l~D 934 (982)
T KOG4653|consen 919 GTG-----EDLLPILRLLLID 934 (982)
T ss_pred ccc-----hhhHHHHHHHHHH
Confidence 888 4567777776655
No 376
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.16 E-value=0.0013 Score=60.41 Aligned_cols=85 Identities=26% Similarity=0.275 Sum_probs=65.7
Q ss_pred hhhHhhhh-cCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 000861 404 LPILPAFL-NDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEM 482 (1249)
Q Consensus 404 Lp~l~t~l-nD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l 482 (1249)
||.|+..+ +|++|.+|...++.+.. +| .+..+|++.++|.|+++.||.+++..|..+- .+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~----~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~---~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE----LG----DPEAIPALIELLKDEDPMVRRAAARALGRIG------DP---EA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC----CT----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HH---HT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH----cC----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CH---HH
Confidence 57788888 99999999988887773 33 3467999999999999999999999999762 23 46
Q ss_pred HHHhcccccCCCHH-HHHHHHHHH
Q 000861 483 IERAFPLLCYPSQW-VRRSVVTFI 505 (1249)
Q Consensus 483 ~~~~~~ll~hpn~w-iR~~~~~~i 505 (1249)
++.+..++.+++.+ +|.+++..+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhc
Confidence 66667777776544 699888765
No 377
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.15 E-value=0.0089 Score=71.09 Aligned_cols=209 Identities=13% Similarity=0.068 Sum_probs=128.7
Q ss_pred HHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcc
Q 000861 196 ASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKI 275 (1249)
Q Consensus 196 l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~i 275 (1249)
+..++.++.+ ....+|..+++-|.. .......+.++.+|+|.+|.||.+++..+..... +
T Consensus 88 ~~~L~~~L~d-~~~~vr~aaa~ALg~--------i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------~--- 147 (410)
T TIGR02270 88 LRSVLAVLQA-GPEGLCAGIQAALGW--------LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------D--- 147 (410)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhc--------CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------C---
Confidence 5566666666 555567776665553 2234556777788888888888888866664111 1
Q ss_pred hhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHH
Q 000861 276 FPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQL 355 (1249)
Q Consensus 276 f~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1249)
-.|.+..+++|++..||..-+.+++.|...
T Consensus 148 ----~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------------------------------------------- 177 (410)
T TIGR02270 148 ----PGPALEAALTHEDALVRAAALRALGELPRR---------------------------------------------- 177 (410)
T ss_pred ----hHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------------------------------------------
Confidence 123344444588888888888888776321
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccCh
Q 000861 356 SQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGE 435 (1249)
Q Consensus 356 ~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~ 435 (1249)
...+.+...+ .|.+++||++.+..+..+ |.+.. +..++.+..+..+-.|.+....+-.. |.
T Consensus 178 -----~a~~~L~~al--~d~~~~VR~aA~~al~~l----G~~~A----~~~l~~~~~~~g~~~~~~l~~~lal~----~~ 238 (410)
T TIGR02270 178 -----LSESTLRLYL--RDSDPEVRFAALEAGLLA----GSRLA----WGVCRRFQVLEGGPHRQRLLVLLAVA----GG 238 (410)
T ss_pred -----cchHHHHHHH--cCCCHHHHHHHHHHHHHc----CCHhH----HHHHHHHHhccCccHHHHHHHHHHhC----Cc
Confidence 1122233445 478899999999887443 44333 34555555565554444333322111 33
Q ss_pred hhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhh
Q 000861 436 RSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 436 ~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~ 510 (1249)
. ..++.|++.+.|+. |+..++..|-.+-. . ..++.++..+.++- +|..+-+.+..|..
T Consensus 239 ~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------p---~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 239 P----DAQAWLRELLQAAA--TRREALRAVGLVGD------V---EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred h----hHHHHHHHHhcChh--hHHHHHHHHHHcCC------c---chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 3 67888899999966 99999888876533 2 24555555665554 67777777777664
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.00095 Score=49.13 Aligned_cols=39 Identities=44% Similarity=0.755 Sum_probs=36.2
Q ss_pred CcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEE
Q 000861 825 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 863 (1249)
Q Consensus 825 G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD 863 (1249)
++++..+..|...|+++.|++++.++++++.||.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567888999999999999999999999999999999996
No 379
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.12 E-value=0.00037 Score=84.16 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhH
Q 000861 359 RKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSV 438 (1249)
Q Consensus 359 ~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~ 438 (1249)
...+.|.+.+|.. -.+..||.-||++|..+...+-.+..+|.|+||+..-++|.|.-||.-=+.+|..+|+.+|...+
T Consensus 328 q~~i~p~l~kLF~--~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 328 QVRIIPVLLKLFK--SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccchhhhHHHHhc--CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3678899999995 45689999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH-hcccccCCCHHHHHHHHHHHHHHhhcCCccce
Q 000861 439 EEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIER-AFPLLCYPSQWVRRSVVTFIAASSESLGAVDS 517 (1249)
Q Consensus 439 ~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~-~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~ 517 (1249)
.-.|+-+|-..=.|....+|.+..-||-+... .+....--.++.. -..-+.+|-.-=|.|.+-.+.+..+.+...++
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~--~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~v 483 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAP--HLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEV 483 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeeccccc--ccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhh
Confidence 88999999988889999999999988887665 3322211112221 12235567666799999999999999999999
Q ss_pred eeEeeeccchhhhcCCCCc
Q 000861 518 YVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 518 ~~~l~P~l~~~l~~~v~~i 536 (1249)
-.+|+|.+-|+..|+=..+
T Consensus 484 a~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred hhhccccccccccCcccch
Confidence 9999999999998865554
No 380
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.09 E-value=0.0034 Score=57.70 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHH
Q 000861 365 VVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLP 444 (1249)
Q Consensus 365 ~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llP 444 (1249)
.+.++|. .|.++.||..++.-|..+. ....+|.|+.+++|++|.||.+.+..+..+. .+...|
T Consensus 3 ~L~~~l~-~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~ 65 (88)
T PF13646_consen 3 ALLQLLQ-NDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP 65 (88)
T ss_dssp HHHHHHH-TSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence 3444442 3789999999988887442 2357999999999999999999999998773 345778
Q ss_pred HHHHHccCC-cHHHHHHHHHHHH
Q 000861 445 YIEQALSDA-TEAVIVNALDCLA 466 (1249)
Q Consensus 445 ll~q~L~D~-~e~V~~~~l~~l~ 466 (1249)
.+.++|.|+ +..||..++.+|.
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 888888775 5667999988873
No 381
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.09 E-value=0.0017 Score=77.11 Aligned_cols=73 Identities=18% Similarity=0.124 Sum_probs=62.8
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEc
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSV 912 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv 912 (1249)
.....|.|++++|+...++.|+.||.|.+||..++.. ++....-..+.++|+|+|..+++|+..|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4678999999999999999999999999999987642 12223345789999999999999999999999999
Q ss_pred c
Q 000861 913 D 913 (1249)
Q Consensus 913 ~ 913 (1249)
.
T Consensus 329 A 329 (545)
T PF11768_consen 329 A 329 (545)
T ss_pred e
Confidence 8
No 382
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.06 E-value=0.00071 Score=49.09 Aligned_cols=30 Identities=40% Similarity=0.543 Sum_probs=26.9
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000861 235 VLPHVIAMLSDPAAIVRCAALETLCDILPL 264 (1249)
Q Consensus 235 ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~ 264 (1249)
|+|+++++++|++++||.+|+++|..+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998764
No 383
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0098 Score=71.01 Aligned_cols=281 Identities=17% Similarity=0.164 Sum_probs=179.3
Q ss_pred chhHHHHHHHHHHHhhcCC----hHHHHHhhHHHHHHhcC-CCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhh
Q 000861 209 PHYRRAAILLLKSSSLFID----DEDRLQRVLPHVIAMLS-DPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPM 283 (1249)
Q Consensus 209 ~~~r~~a~~ll~~l~~~~~----de~~l~~ilP~~~~ll~-D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~ 283 (1249)
...++.|..-+..+...-. ++....-++|-++.+|+ +..+.+|..|+-+|+.+..--...+.. +...--+|.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~---vv~agavp~ 156 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV---VVDAGAVPI 156 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc---cccCCchHH
Confidence 3346666666655543322 45566789999999996 888999999999999998743332211 223336788
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHH
Q 000861 284 LSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIA 363 (1249)
Q Consensus 284 l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 363 (1249)
|-.|...++..||--.+-.|+.+|--.-.+-+..- .-.++
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl----------------------------------------~~g~l 196 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL----------------------------------------SCGAL 196 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH----------------------------------------hhcch
Confidence 99999999999998877777777643332222211 11233
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCcc-----ccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcc---cCh
Q 000861 364 EVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQR-----QSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFF---VGE 435 (1249)
Q Consensus 364 ~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~-----~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~---lG~ 435 (1249)
+.+..++...+. -...|++.=-|+.||. |++ .....+||.|..++.+.|..|..--.-+|..++.- .=.
T Consensus 197 ~pLl~~l~~~~~-~~~lRn~tW~LsNlcr--gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 197 DPLLRLLNKSDK-LSMLRNATWTLSNLCR--GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred HHHHHHhccccc-hHHHHHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 334444431222 1334444444566664 332 45677999999999999999985444444444311 111
Q ss_pred hhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHhhc
Q 000861 436 RSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLR---KRILLEMIERAFPLLC-YPSQWVRRSVVTFIAASSES 511 (1249)
Q Consensus 436 ~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~---~~~~~~l~~~~~~ll~-hpn~wiR~~~~~~i~~~a~~ 511 (1249)
...+.-+.|.++..|.-++.-|+..+|+.+-.++. |.-. .-.-..+++.+..++. ||..-||..|+-+|+.|+.-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt-G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT-GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceee-ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 23345578999999999999999999998888443 2111 1122346778888888 99999999999999998751
Q ss_pred CC---ccceeeEeeeccchhhhcCCCCc
Q 000861 512 LG---AVDSYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 512 l~---~~d~~~~l~P~l~~~l~~~v~~i 536 (1249)
-- .+-+..-|+|.|...|...=..+
T Consensus 353 ~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 353 NQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred CHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 11 12344467777777766543333
No 384
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.04 E-value=0.015 Score=70.68 Aligned_cols=275 Identities=16% Similarity=0.174 Sum_probs=145.4
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhh
Q 000861 199 LCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPE 278 (1249)
Q Consensus 199 i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~e 278 (1249)
|+...+. +...|.-|+.+|..+..+..+=. ++.+-.++.|++|++..||..|++.|+.+++--. -+..
T Consensus 28 il~~~kg--~~k~K~Laaq~I~kffk~FP~l~--~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--------~~v~ 95 (556)
T PF05918_consen 28 ILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQ--EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--------EHVS 95 (556)
T ss_dssp HHHGGGS---HHHHHHHHHHHHHHHCC-GGGH--HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----------T-HH
T ss_pred HHHHccC--CHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--------HHHh
Confidence 3344443 57789999999999999987643 5667788999999999999999999999887421 2222
Q ss_pred chhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHH
Q 000861 279 YILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQL 358 (1249)
Q Consensus 279 yilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1249)
.|--.|..|.+..+...+.++=.+|..|...=- .
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~----------------------------------------k------ 129 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP----------------------------------------K------ 129 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H----------------------------------------H------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc----------------------------------------H------
Confidence 333444444444444444455455544422100 0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhc----hhhhhhcCc--cccchhhhhhHhhhhcC-CCHHHHHHHHhhhhhhhc
Q 000861 359 RKSIAEVVQELVMGPKQTPSIRRALLQDI----GNLCSFFGQ--RQSNDFLLPILPAFLND-RDEQLRAVFYGQIVYVCF 431 (1249)
Q Consensus 359 ~~~l~~~~~~Ll~~~D~~~~Vr~all~~i----~~l~~f~G~--~~~~d~lLp~l~t~lnD-~~w~lR~a~~~~i~~la~ 431 (1249)
..|..+|.+++..+..+..||.-+|+=| ..|-.-+=. +.+.++|+-.+...|.| ......+. ++.+-.+-.
T Consensus 130 -~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~-m~lL~~lk~ 207 (556)
T PF05918_consen 130 -GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELF-MSLLKSLKI 207 (556)
T ss_dssp -HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHH-HHHHHTSGG
T ss_pred -HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHhCcc
Confidence 1223333443311112346676666433 222221111 33557777888888888 22332221 122222222
Q ss_pred ccCh--hhHHHhHHHHHH-HHccC-----CcHHHHHHHHHHHHH---HHhcCCCchHHHHHHHHHhcccccCCCHHHHHH
Q 000861 432 FVGE--RSVEEYLLPYIE-QALSD-----ATEAVIVNALDCLAI---LCKSGYLRKRILLEMIERAFPLLCYPSQWVRRS 500 (1249)
Q Consensus 432 ~lG~--~~~~~~llPll~-q~L~D-----~~e~V~~~~l~~l~~---l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~ 500 (1249)
|-|. ..-.+.|+.++. |+--| .+...+.+.+.|+.. +...|.-..+.+--++..++|-+.+-..=.|.-
T Consensus 208 ~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~ 287 (556)
T PF05918_consen 208 YGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLD 287 (556)
T ss_dssp ---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHH
T ss_pred ccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHH
Confidence 2122 222355777766 44122 245788889998888 333355445555556678888877767778889
Q ss_pred HHHHHHHHhhcCCccceeeEeeeccchhhhcCCC
Q 000861 501 VVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPA 534 (1249)
Q Consensus 501 ~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~ 534 (1249)
.+..++.++...+..| -..++|.|-..|..-+|
T Consensus 288 lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 288 LLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence 9999999999999888 44445666555555444
No 385
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.037 Score=67.57 Aligned_cols=293 Identities=16% Similarity=0.267 Sum_probs=198.6
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHH---------------HhhHHHHHHhcCCCChhHHHHHHHHH
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRL---------------QRVLPHVIAMLSDPAAIVRCAALETL 258 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l---------------~~ilP~~~~ll~D~~~~VR~~A~~~l 258 (1249)
-|+.++.--+.|.++...-++++.|.++=+-.-.|+.+. +.|--+++.-|.-++|.++..|.+++
T Consensus 35 ~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~v 114 (859)
T KOG1241|consen 35 QFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCV 114 (859)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHH
Confidence 355555555666666666666666666544444444322 44556777778889999999999999
Q ss_pred HHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 000861 259 CDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSS 338 (1249)
Q Consensus 259 ~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1249)
+++... ++| .+..|+.|--.+.+..+.+...||-+.-+.|+.+.+-+..-...
T Consensus 115 a~IA~~--ElP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~---------------------- 167 (859)
T KOG1241|consen 115 AAIACI--ELP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE---------------------- 167 (859)
T ss_pred HHHHHh--hCc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH----------------------
Confidence 888753 233 23666655555555555555679998888888887655422111
Q ss_pred CCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh----cCccccchhhhhhHhhhhcCC
Q 000861 339 SNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF----FGQRQSNDFLLPILPAFLNDR 414 (1249)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f----~G~~~~~d~lLp~l~t~lnD~ 414 (1249)
+...+-+..++.-... ...+..||.|.+.-|..--.| |..|.--.+|+....+--+-+
T Consensus 168 -----------------~~sN~iLtaIv~gmrk-~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 168 -----------------QQSNDILTAIVQGMRK-EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP 229 (859)
T ss_pred -----------------HHHhHHHHHHHhhccc-cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC
Confidence 1111334444454443 255789999988766544444 556667788899998888999
Q ss_pred CHHHHHHHHhhhhhhhcccC---hhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--------------CCC---
Q 000861 415 DEQLRAVFYGQIVYVCFFVG---ERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS--------------GYL--- 474 (1249)
Q Consensus 415 ~w~lR~a~~~~i~~la~~lG---~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--------------gl~--- 474 (1249)
|.++|.|-|++++.|....= ....++-|+++-+++..-+.+.|-..+++--..+|+. |+-
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 99999999999999885432 1233344556666678889999999999988877763 222
Q ss_pred ---chHHHHHHHHHhcccccCC-------CHHHHHHHHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCc
Q 000861 475 ---RKRILLEMIERAFPLLCYP-------SQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 475 ---~~~~~~~l~~~~~~ll~hp-------n~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i 536 (1249)
.+..+-.++|.++.++.|. .|-+-+|+--.+.-+|+..+.. ++|++.||.+..+.+=
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-----Iv~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-----IVPHVLPFIEENIQNP 376 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-----chhhhHHHHHHhcCCc
Confidence 2334567888888888872 5669999988888888877654 6678888888776653
No 386
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.01 E-value=0.0097 Score=70.01 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=121.9
Q ss_pred CCcccchhhHHHHHhhhccCCC--chhHHHHHHHHHHHhhcCCh--HHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHh
Q 000861 187 MKCEGIVLIASLLCSCVRNVKL--PHYRRAAILLLKSSSLFIDD--EDRLQRVLPHVIAMLSDPAAIVRCAALETLCDIL 262 (1249)
Q Consensus 187 ~~~~~~~~~l~~i~s~~r~~~~--~~~r~~a~~ll~~l~~~~~d--e~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l 262 (1249)
...||.-++-..+.+.+|.+.+ -.+|+++|.+|..+...+.. |....-++--+..-+-|.++.||..|+.+|+.+-
T Consensus 81 ~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 81 DDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred CChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5567788888999999998755 46799999999999999875 7777777777777777999999999998888665
Q ss_pred ccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcc
Q 000861 263 PLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNET 342 (1249)
Q Consensus 263 ~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1249)
.+ ..|++..+|-
T Consensus 161 e~-----------------------~~neen~~~n--------------------------------------------- 172 (885)
T COG5218 161 EM-----------------------ELNEENRIVN--------------------------------------------- 172 (885)
T ss_pred hc-----------------------cCChHHHHHH---------------------------------------------
Confidence 32 1222222221
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHH
Q 000861 343 SVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVF 422 (1249)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~ 422 (1249)
++..++. -|++.+||+++|-||..= ..-+|.+.+=+.|-+---|..+
T Consensus 173 ----------------------~l~~~vq-nDPS~EVRr~allni~vd----------nsT~p~IlERarDv~~anRr~v 219 (885)
T COG5218 173 ----------------------LLKDIVQ-NDPSDEVRRLALLNISVD----------NSTYPCILERARDVSGANRRMV 219 (885)
T ss_pred ----------------------HHHHHHh-cCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhhhhHHHHHHH
Confidence 1112221 277888888888887532 2346888888888877777776
Q ss_pred Hhhhh-hhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 000861 423 YGQIV-YVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAI 467 (1249)
Q Consensus 423 ~~~i~-~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~ 467 (1249)
++.+. .++. +-..+.+..|+ ++.-+|.|.|+.|+-++...+..
T Consensus 220 Y~r~Lp~iGd-~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 220 YERCLPRIGD-LKSLSIDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred HHHHhhhhcc-hhhccccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 66543 3321 12233345566 77777888888888887766554
No 387
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0048 Score=68.69 Aligned_cols=251 Identities=16% Similarity=0.178 Sum_probs=153.8
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHH----HhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRL----QRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPP 270 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l----~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~ 270 (1249)
-++++.+.+.. .-+.+++.|+.-+..++----.--++ -+++|-++.|++|+.+.|++.|--+|..+.+--++.-+
T Consensus 209 ~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 209 GLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred Cchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence 35666777776 77888999887776665311000111 24899999999999999999998887766543221111
Q ss_pred C-CCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhcc
Q 000861 271 S-DAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRL 349 (1249)
Q Consensus 271 ~-~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1249)
. .+. =+|.+-.|.+++.--.=.+-..||-.|+-.- +++
T Consensus 288 iv~ag-----~lP~lv~Llqs~~~plilasVaCIrnisihp---------------lNe--------------------- 326 (550)
T KOG4224|consen 288 IVEAG-----SLPLLVELLQSPMGPLILASVACIRNISIHP---------------LNE--------------------- 326 (550)
T ss_pred HHhcC-----CchHHHHHHhCcchhHHHHHHHHHhhccccc---------------Ccc---------------------
Confidence 0 111 2445555666654222222233443332100 000
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhh--------hcCccccchhhhhhHhhhhcCCCHHHHHH
Q 000861 350 NADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCS--------FFGQRQSNDFLLPILPAFLNDRDEQLRAV 421 (1249)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~--------f~G~~~~~d~lLp~l~t~lnD~~w~lR~a 421 (1249)
.+-.- .-++..++.||..+|+ -+.+.++..-+-.|+. |+|. --+|.++.++-|.--.+|..
T Consensus 327 ----~lI~d-agfl~pLVrlL~~~dn-EeiqchAvstLrnLAasse~n~~~i~es-----gAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 327 ----VLIAD-AGFLRPLVRLLRAGDN-EEIQCHAVSTLRNLAASSEHNVSVIRES-----GAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred ----cceec-ccchhHHHHHHhcCCc-hhhhhhHHHHHHHHhhhhhhhhHHHhhc-----CchHHHHHHHhcCChhHHHH
Confidence 00000 2233445566654443 4567766666655554 3333 23689999999998888887
Q ss_pred HHhhhhhhhc--ccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHH
Q 000861 422 FYGQIVYVCF--FVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRR 499 (1249)
Q Consensus 422 ~~~~i~~la~--~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~ 499 (1249)
+--+|..+|- .--...++.-|+|.++.|+.|..++|+-++...|..|++. . +=-.++..-.-||+.-||-
T Consensus 396 isac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~-----v---~~YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 396 ISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD-----V---EHYARVIEAWDHPVQGIQG 467 (550)
T ss_pred HHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh-----h---HHHHHHHHHhcCcchhHHH
Confidence 7777766663 2223345566899999999999999999999999999873 1 2334556667899987777
Q ss_pred HHHHHHH
Q 000861 500 SVVTFIA 506 (1249)
Q Consensus 500 ~~~~~i~ 506 (1249)
-.+.|+.
T Consensus 468 ~L~Rfl~ 474 (550)
T KOG4224|consen 468 RLARFLA 474 (550)
T ss_pred HHHHHHh
Confidence 6666654
No 388
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.96 E-value=0.041 Score=65.78 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=60.6
Q ss_pred CCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC
Q 000861 937 KEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR 1016 (1249)
Q Consensus 937 h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr 1016 (1249)
....+.+++ ++|+ .+.++.|+.||.|.+||...+..... + ..-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca-~sp~---E~kLvlGC~DgSiiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCA-RSPS---EDKLVLGCEDGSIILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEe-cCcc---cceEEEEecCCeEEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 456788888 9998 77999999999999999987643322 2 24567899999999999999999999999985
Q ss_pred C
Q 000861 1017 F 1017 (1249)
Q Consensus 1017 ~ 1017 (1249)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.94 E-value=0.14 Score=58.32 Aligned_cols=262 Identities=12% Similarity=0.064 Sum_probs=143.9
Q ss_pred CCCcEEEEeccccCceeEEEEcCCCCEEEEEE----------CCCcEEEEECCCCccccccceeeEeecc-----CCceE
Q 000861 823 PRGILVAHLQEHCSAVNEIAISHDHSFFVSAS----------DDSTVKVWDSRKLEKDISFRSRLTYHLE-----GSRAL 887 (1249)
Q Consensus 823 ~~G~lv~~L~~H~~~V~~la~spdg~~laTgs----------~DgtVkIWD~~~~~~~~~~~~~~t~~~h-----~~~V~ 887 (1249)
.+|+++..+..- -.-.+..+||++.+.+++ ..-.|.+||..+....... .+... .....
T Consensus 25 d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI----~iP~k~R~~~~~~~~ 98 (342)
T PF06433_consen 25 DSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI----EIPPKPRAQVVPYKN 98 (342)
T ss_dssp TTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE----EETTS-B--BS--GG
T ss_pred CCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE----ecCCcchheeccccc
Confidence 456777776632 233466899999887653 2346999999998632211 11110 11223
Q ss_pred EEEEecCCCEEEEE--eCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCe
Q 000861 888 CTMMLRHSAQVVVG--ACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCG 965 (1249)
Q Consensus 888 sl~fspdg~~Lasg--s~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~ 965 (1249)
...++.+|+++.+. +-..+|.|-|+. .++ .+..+.. ..|..+- |.+ ..-+.+.+.||.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~-----~~k--------vv~ei~~--PGC~~iy---P~~--~~~F~~lC~DGs 158 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLA-----AKK--------VVGEIDT--PGCWLIY---PSG--NRGFSMLCGDGS 158 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETT-----TTE--------EEEEEEG--TSEEEEE---EEE--TTEEEEEETTSC
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECC-----CCc--------eeeeecC--CCEEEEE---ecC--CCceEEEecCCc
Confidence 45677788776654 334567777776 122 2333322 1222222 222 236778888999
Q ss_pred EEEEEcC-CCccceeee--cCCCCCce-EEEEEcCCCCEEEEEecCCcEEEEeCCCCCc--ccccccC---------CCC
Q 000861 966 IHLWDTR-SNSNTWTLK--AIPEEGYV-SSLVTGPCGNWFVSGSSRGVLTLWDLRFLVP--VNSWQYS---------QVC 1030 (1249)
Q Consensus 966 I~iwDlr-t~~~~~~l~--~~~h~~~I-~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~--l~s~~~~---------~~~ 1030 (1249)
+.-..+. .|+...+.. +.....++ ..-++...+.+++--+.+|.|+--|+..... ...|... ..+
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9888887 444432211 11222222 2334555566666688899998888854432 1222110 011
Q ss_pred CeeEEEEEcCCCCCcccCCCCCEEEEEEC---C-------CeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCC
Q 000861 1031 PIEKMCLFVPPPNAAVSTTARPLIYVAAG---C-------NEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSS 1100 (1249)
Q Consensus 1031 ~I~~l~~~sp~g~~~~~~~~~~~l~t~s~---D-------g~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~ 1100 (1249)
.-.-+++ ++..+ .+++.-. + .+|.++|+.+++++..+....
T Consensus 239 G~Q~~A~-~~~~~---------rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~------------------- 289 (342)
T PF06433_consen 239 GWQLIAY-HAASG---------RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH------------------- 289 (342)
T ss_dssp SSS-EEE-ETTTT---------EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-------------------
T ss_pred ceeeeee-ccccC---------eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-------------------
Confidence 2234556 65544 4444322 1 158888999999888776311
Q ss_pred CCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC--eEEEE-eCCCcEEEEeCCCCCccEEEeCC
Q 000861 1101 RSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG--DLLTG-GTDLKIRRWDHCSPGRSYCICGP 1168 (1249)
Q Consensus 1101 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg--~L~tg-s~Dg~IriWDl~~~~~~~~l~g~ 1168 (1249)
.+.++..+.|. .|++. ..++.|.+||..+++....+.+.
T Consensus 290 -----------------------------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 290 -----------------------------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp -----------------------------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred -----------------------------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 45677888777 66554 56899999999999998887643
No 390
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.94 E-value=0.0025 Score=61.97 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhc---CccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChh
Q 000861 360 KSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFF---GQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGER 436 (1249)
Q Consensus 360 ~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~---G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~ 436 (1249)
..+.+.+.+++. |.++.+|...+.-|..+|.-. -......-++|.++.+++|+++++|...+..+..++..-...
T Consensus 6 ~~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 6 AGGLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred cCChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 346777888884 667999999999888888642 122233478999999999999999999999999998754321
Q ss_pred ---hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Q 000861 437 ---SVEEYLLPYIEQALSDATEAVIVNALDCLAILCK 470 (1249)
Q Consensus 437 ---~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~ 470 (1249)
....-++|.+.+.|.+.+..|+..++..|..|++
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 1223479999999999999999999999999875
No 391
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.93 E-value=0.18 Score=55.84 Aligned_cols=218 Identities=14% Similarity=0.160 Sum_probs=115.1
Q ss_pred ccCCCCcE---EEEeccccCceeEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCC
Q 000861 820 GWRPRGIL---VAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 820 ~W~~~G~l---v~~L~~H~~~V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg 895 (1249)
+|-|.-+. -..+.+-...+..|+|+|+.. ++++....+.|...+.. ++.. ....+.+. +..-.+++..++
T Consensus 3 ~~~~~y~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl----r~i~l~g~-~D~EgI~y~g~~ 76 (248)
T PF06977_consen 3 LWLPDYRVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL----RRIPLDGF-GDYEGITYLGNG 76 (248)
T ss_dssp ---TT-EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE----EEEE-SS--SSEEEEEE-STT
T ss_pred cccCCcEEEEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE----EEEeCCCC-CCceeEEEECCC
Confidence 46554332 235666666799999999865 56666667777777754 4421 12233443 347889998888
Q ss_pred CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeec-----CCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEE
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKD-----TKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWD 970 (1249)
Q Consensus 896 ~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~-----~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwD 970 (1249)
.++++.-.++.+.+++++...+ .+ .......+. .+...+-.++ |++. ++.++.+-...-..+|.
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~N~G~EGla-~D~~---~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTT---SL----DRADVQKISLGFPNKGNKGFEGLA-YDPK---TNRLFVAKERKPKRLYE 145 (248)
T ss_dssp EEEEEETTTTEEEEEEE----T---T------EEEEEEEE---S---SS--EEEE-EETT---TTEEEEEEESSSEEEEE
T ss_pred EEEEEEcCCCcEEEEEEecccc---cc----chhhceEEecccccCCCcceEEEE-EcCC---CCEEEEEeCCCChhhEE
Confidence 7777766789999999962111 11 001111111 2334477888 9998 45666666665566666
Q ss_pred cCC---Cccceeee------cCCCCCceEEEEEcCC-CCEEEEEecCCcEEEEeCCCCCcccccccCC--------CCCe
Q 000861 971 TRS---NSNTWTLK------AIPEEGYVSSLVTGPC-GNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQ--------VCPI 1032 (1249)
Q Consensus 971 lrt---~~~~~~l~------~~~h~~~I~sl~~spd-g~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~--------~~~I 1032 (1249)
+.. ........ .......+.+++++|. +++++....+..|..+| +.|+++..+.... -...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SE
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCc
Confidence 553 21111111 1123345889999995 56777777888899999 5777665543321 1246
Q ss_pred eEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 1033 EKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 1033 ~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
..|++ .++|+ |++.++-+..++|
T Consensus 225 EGIa~-d~~G~----------LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAF-DPDGN----------LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE--TT------------EEEEETTTEEEEE
T ss_pred cEEEE-CCCCC----------EEEEcCCceEEEe
Confidence 78999 88887 7888887776665
No 392
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.92 E-value=0.065 Score=68.58 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeC
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDL 1015 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDl 1015 (1249)
.+.|.++. |..+ +..++.++..|.|.+-|..++.....- .-.+.|.+++|+||+.+++..+.++++.+-+-
T Consensus 68 d~~i~s~~-fl~d---~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQ-FLAD---TNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEE-Eecc---cceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 36799998 8877 568899999999999998877543211 23678999999999999999999888877554
No 393
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.91 E-value=0.0031 Score=59.14 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=68.0
Q ss_pred HHHHHHhchhhhhhcCcc--ccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHH--HhHHHHHHHHccCCcH
Q 000861 380 RRALLQDIGNLCSFFGQR--QSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVE--EYLLPYIEQALSDATE 455 (1249)
Q Consensus 380 r~all~~i~~l~~f~G~~--~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~--~~llPll~q~L~D~~e 455 (1249)
|..-|-.|..++..+|.+ +--+.|+|.++..++|.||+||.+-+|++..++...+.+.+. ..|.+.+-..+.|+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 445555566666666644 344678999999999999999999999999999888877654 3477778889999999
Q ss_pred HHHHHHHHHHHHHH
Q 000861 456 AVIVNALDCLAILC 469 (1249)
Q Consensus 456 ~V~~~~l~~l~~l~ 469 (1249)
.|+..+ +-|..|.
T Consensus 83 ~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 83 NVRSAA-ELLDRLL 95 (97)
T ss_pred hHHHHH-HHHHHHh
Confidence 999887 5555443
No 394
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.91 E-value=0.023 Score=72.22 Aligned_cols=211 Identities=16% Similarity=0.169 Sum_probs=159.0
Q ss_pred hcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHH
Q 000861 224 LFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNI 303 (1249)
Q Consensus 224 ~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l 303 (1249)
..+..+..++.+-|-|..-+.|....=|..|++.+-++++.-. .. -...+-+-+...++....|.+..|=+.-|.||
T Consensus 243 d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~--~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l 319 (815)
T KOG1820|consen 243 DLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KE--IVKGYTGLLGILLKIRLKDANINVVMLAAQIL 319 (815)
T ss_pred ccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cc--cccCcchHHHHHHHHhccCcchhHHHHHHHHH
Confidence 3456677888899999999999999999999999999998765 11 12245566888889999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000861 304 AKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRAL 383 (1249)
Q Consensus 304 ~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~al 383 (1249)
..||...+ +. ...+...+.|.|.+=+ +|.-+++|-++
T Consensus 320 ~~ia~~lr-~~----------------------------------------~~~~~~~v~p~lld~l--kekk~~l~d~l 356 (815)
T KOG1820|consen 320 ELIAKKLR-PL----------------------------------------FRKYAKNVFPSLLDRL--KEKKSELRDAL 356 (815)
T ss_pred HHHHHhcc-hh----------------------------------------hHHHHHhhcchHHHHh--hhccHHHHHHH
Confidence 88886544 22 1112256667777766 46778999999
Q ss_pred HHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccC----hhhHHHhHHHHHHHHccCCcHHHHH
Q 000861 384 LQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVG----ERSVEEYLLPYIEQALSDATEAVIV 459 (1249)
Q Consensus 384 l~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG----~~~~~~~llPll~q~L~D~~e~V~~ 459 (1249)
+.-+...|. ---.+.+.+.+++++.+++++.|.-+....-..-..+| ....-..+.|.+...-.|..+.||.
T Consensus 357 ~~~~d~~~n----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~ 432 (815)
T KOG1820|consen 357 LKALDAILN----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRK 432 (815)
T ss_pred HHHHHHHHh----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHH
Confidence 988877776 33456688999999999999999986666555555555 2233467999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHh
Q 000861 460 NALDCLAILCKSGYLRKRILLEMIERA 486 (1249)
Q Consensus 460 ~~l~~l~~l~~~gl~~~~~~~~l~~~~ 486 (1249)
++++++..+.+ .+....+.-++..+
T Consensus 433 Aa~e~~~~v~k--~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 433 AALEAVAAVMK--VHGEEVFKKLLKDL 457 (815)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHhh
Confidence 99999999888 44445444444444
No 395
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.88 E-value=0.064 Score=65.69 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=69.4
Q ss_pred CCCCEEEEEecCCcEEEEeCCC-----CCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEEEECC
Q 000861 996 PCGNWFVSGSSRGVLTLWDLRF-----LVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAE 1069 (1249)
Q Consensus 996 pdg~~L~sgs~dG~I~lWDlr~-----~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~ 1069 (1249)
++|++...+ ++.|.+.|.++ ...+..+. -....+.+.+ +|+|+ ++++++. ++++.|.|+.
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~v-SPDGk---------ylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNT-SPDGK---------YFIANGKLSPTVTVIDVR 351 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEE--CCCCccceEE-CCCCC---------EEEEeCCCCCcEEEEECh
Confidence 456665553 56799999987 33444443 3446778899 99998 7777765 8899999998
Q ss_pred CCceeEEEecccCCCCCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCC-eEEEEeCC
Q 000861 1070 NGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTD 1148 (1249)
Q Consensus 1070 tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L~tgs~D 1148 (1249)
+.+.. +.. .-+ | . ... ..++.. ..+-...+|.++| ...|-.-|
T Consensus 352 k~k~~--~~~---~~~---------~---~--------~~v-------vaevev----GlGPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 352 KLDDL--FDG---KIK---------P---R--------DAV-------VAEPEL----GLGPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred hhhhh--hhc---cCC---------c---c--------ceE-------EEeecc----CCCcceEEECCCCCEEEeEeec
Confidence 65421 110 000 0 0 000 000000 0133456788888 66677789
Q ss_pred CcEEEEeCCC
Q 000861 1149 LKIRRWDHCS 1158 (1249)
Q Consensus 1149 g~IriWDl~~ 1158 (1249)
..|-.||+..
T Consensus 396 sqv~kwn~~~ 405 (635)
T PRK02888 396 SQIVKWNIEA 405 (635)
T ss_pred ceeEEEehHH
Confidence 9999999976
No 396
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.86 E-value=0.0016 Score=54.19 Aligned_cols=53 Identities=32% Similarity=0.347 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000861 209 PHYRRAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDI 261 (1249)
Q Consensus 209 ~~~r~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~ 261 (1249)
|++|..|+..|..+++...+. .....++|.++.+|+|+++.||.+|+.+|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 788999999999888777654 47889999999999999999999999999764
No 397
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.027 Score=67.74 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=102.4
Q ss_pred HHHHhhhccCCCchhHHHHHHHHHHHhhcCChHH---HHHhhH----HHHHHhcCCCChhHHHHHHHHHHHHhccccccC
Q 000861 197 SLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDED---RLQRVL----PHVIAMLSDPAAIVRCAALETLCDILPLVRNFP 269 (1249)
Q Consensus 197 ~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~---~l~~il----P~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~ 269 (1249)
+.|.-++.. .-..+|..|+.+|..+.+-.+.+. -.|+++ -|++.||+|+.|+||..|+..++++....=.+-
T Consensus 177 p~l~R~L~a-~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKA-RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhcc-CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 344444444 566779999999999999887654 345554 589999999999999999999988876543221
Q ss_pred CCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhcc
Q 000861 270 PSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRL 349 (1249)
Q Consensus 270 ~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1249)
|. ++..+.+--.+-.++.|....||++.-++|+.++..- .+
T Consensus 256 P~--~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-----~s-------------------------------- 296 (1005)
T KOG1949|consen 256 PP--TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-----LS-------------------------------- 296 (1005)
T ss_pred CH--HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc-----cc--------------------------------
Confidence 21 2444433344567888998999999999999886321 10
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchh
Q 000861 350 NADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGN 389 (1249)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~ 389 (1249)
--+.+.++|.+--+| .|+...||.|+..=|.+
T Consensus 297 ------h~~le~~Lpal~~~l--~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 297 ------HPLLEQLLPALRYSL--HDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred ------hhHHHHHHHhcchhh--hccchhHHHHHHHHHHH
Confidence 112367777777777 58999999998876553
No 398
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.049 Score=65.25 Aligned_cols=342 Identities=18% Similarity=0.183 Sum_probs=211.2
Q ss_pred HhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhccCCCchhHHHHHHHHH
Q 000861 141 ISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVRNVKLPHYRRAAILLLK 220 (1249)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~ 220 (1249)
+-+-+.+++.+.+++-+.-.|.-|+..--.|. +...+.|++.+ +..++.. .+...+-.|.=-|.
T Consensus 114 lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T------------~~vv~agavp~---fi~Ll~s-~~~~v~eQavWALg 177 (514)
T KOG0166|consen 114 LVEFLSRDDNPTLQFEAAWALTNIASGTSEQT------------KVVVDAGAVPI---FIQLLSS-PSADVREQAVWALG 177 (514)
T ss_pred HHHHHccCCChhHHHHHHHHHHHHhcCchhhc------------cccccCCchHH---HHHHhcC-CcHHHHHHHHHHHh
Confidence 33444567778888888888888877652221 22334454433 4444555 66677777766665
Q ss_pred HHhh---cCChHHHHHhhHHHHHHhcCCCCh-hHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHH
Q 000861 221 SSSL---FIDDEDRLQRVLPHVIAMLSDPAA-IVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVR 296 (1249)
Q Consensus 221 ~l~~---~~~de~~l~~ilP~~~~ll~D~~~-~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR 296 (1249)
.++. .+-|-+.---+++-++.++..+.+ ....-|.-+|..++.--..-||-+ .+ .-|||.|..|+...+..|.
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~-~v--~~iLp~L~~ll~~~D~~Vl 254 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD-VV--APILPALLRLLHSTDEEVL 254 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH-HH--HHHHHHHHHHHhcCCHHHH
Confidence 5544 333445555567888888887665 445556777888887655333322 23 4599999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHH-HHHHHHHHHHHHhcCCCC
Q 000861 297 ICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQ-LRKSIAEVVQELVMGPKQ 375 (1249)
Q Consensus 297 ~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~Ll~~~D~ 375 (1249)
.-.+-.|..|+.-.. +..+. +-..+.|.+..||. ..
T Consensus 255 ~Da~WAlsyLsdg~n-----------------------------------------e~iq~vi~~gvv~~LV~lL~--~~ 291 (514)
T KOG0166|consen 255 TDACWALSYLTDGSN-----------------------------------------EKIQMVIDAGVVPRLVDLLG--HS 291 (514)
T ss_pred HHHHHHHHHHhcCCh-----------------------------------------HHHHHHHHccchHHHHHHHc--CC
Confidence 555555555432111 01111 12357788889994 67
Q ss_pred CHHHHHHHHHhchhhhhhcCccc-----cchhhhhhHhhhhc-CCCHHHHHHHHhhhhhhhcccChh-----hHHHhHHH
Q 000861 376 TPSIRRALLQDIGNLCSFFGQRQ-----SNDFLLPILPAFLN-DRDEQLRAVFYGQIVYVCFFVGER-----SVEEYLLP 444 (1249)
Q Consensus 376 ~~~Vr~all~~i~~l~~f~G~~~-----~~d~lLp~l~t~ln-D~~w~lR~a~~~~i~~la~~lG~~-----~~~~~llP 444 (1249)
++.|+...|.-++. ...|.+. .+--+||+|..++. -+...+|....=.|..|+. |.+ -.+.-|+|
T Consensus 292 ~~~v~~PaLRaiGN--IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p 367 (514)
T KOG0166|consen 292 SPKVVTPALRAIGN--IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIP 367 (514)
T ss_pred CcccccHHHhhccc--eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHH
Confidence 78899888888777 4456553 44556999999998 6677799988888888886 644 23456899
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHH-----HHHHhcccccCCCHHHHHHHH---HHHHHHhhcCCccc
Q 000861 445 YIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLE-----MIERAFPLLCYPSQWVRRSVV---TFIAASSESLGAVD 516 (1249)
Q Consensus 445 ll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~-----l~~~~~~ll~hpn~wiR~~~~---~~i~~~a~~l~~~d 516 (1249)
.++..|...|+..+..|.-.++.++..|. ...+.- +++....+|.-++..+=+.++ +.|-.+++..+.-+
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~ 445 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG 445 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999988876 222222 333444455555555533333 34444444443211
Q ss_pred eeeEeeeccchhhhcCCCCcCCHHHHHhccCCCCcHHHHHHHHH
Q 000861 517 SYVFLAPVIRPFLRRQPASLASVKALLSCLKPPVSREVFYQVLE 560 (1249)
Q Consensus 517 ~~~~l~P~l~~~l~~~v~~i~~~~~ll~~l~~PlsR~vf~~~~~ 560 (1249)
- .++ ..-|... .--.-++.|+.+=...+|+.+.+
T Consensus 446 ~--------n~~-~~~IEe~-ggldkiE~LQ~hen~~Iy~~A~~ 479 (514)
T KOG0166|consen 446 T--------NPL-AIMIEEA-GGLDKIENLQSHENEEIYKKAYK 479 (514)
T ss_pred c--------cHH-HHHHHHc-cChhHHHHhhccccHHHHHHHHH
Confidence 1 000 0001111 11122455677777777777765
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.75 E-value=0.16 Score=62.81 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred eEEEEEcCCCccceeeecCCCCCc----eEEEEEc----CCCC---EEEEEecCCcEEEEeCCCCCcccccccCCCCCee
Q 000861 965 GIHLWDTRSNSNTWTLKAIPEEGY----VSSLVTG----PCGN---WFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE 1033 (1249)
Q Consensus 965 ~I~iwDlrt~~~~~~l~~~~h~~~----I~sl~~s----pdg~---~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~ 1033 (1249)
.|..+|..+|+..|..+...+... .....+. -++. .+++++.+|.+...|.++|+.+....... .
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~ 332 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----Q 332 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----c
Confidence 799999999999999865433211 1111111 1332 67889999999999999999887654210 1
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEE------------------ECCCeEEEEECCCCceeEEEecccCCCCCCcccccccc
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVA------------------AGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAF 1095 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~------------------s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp 1095 (1249)
.+.. .| + .++++ ..+|.+.-.|..+|+.+-..........
T Consensus 333 ~~~~-~~-~----------~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~---------- 390 (488)
T cd00216 333 PMAY-DP-G----------LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS---------- 390 (488)
T ss_pred cccc-CC-c----------eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc----------
Confidence 1222 22 1 23332 2356788888888875444432100000
Q ss_pred cCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeCCCCCccEEEe
Q 000861 1096 ARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCIC 1166 (1249)
Q Consensus 1096 ~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl~~~~~~~~l~ 1166 (1249)
+... ... ....++. .++.++.|+.||.|+.+|..+++..-...
T Consensus 391 -----------------------~~~g--~~~--~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 391 -----------------------WNIG--FPH--WGGSLAT-AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred -----------------------cccC--Ccc--cCcceEe-cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 0000 000 0011111 23478888899999999999998876654
No 400
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.73 E-value=0.37 Score=56.92 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=112.0
Q ss_pred ccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeecc----------------C
Q 000861 820 GWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLE----------------G 883 (1249)
Q Consensus 820 ~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h----------------~ 883 (1249)
+++.....+..+......+....|||+|+.+|-.. ++.|.+++..+++. ..++..+. -
T Consensus 27 i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-----~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 27 IYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-----TQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-----EESES--TTTEEESB--HHHHHHTS
T ss_pred EEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe-----EEeccccceeEEcCccceecccccc
Confidence 44533344455554577899999999999988876 47899998876642 12333331 1
Q ss_pred CceEEEEEecCCCEEEEEeC-CCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC
Q 000861 884 SRALCTMMLRHSAQVVVGAC-DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ 962 (1249)
Q Consensus 884 ~~V~sl~fspdg~~Lasgs~-Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~ 962 (1249)
+.-..+-|+|||++|+.... +..|..+.+.......+ ..-.+..+. +-.- |....
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------------~yp~~~~~~-YPk~---G~~np---- 156 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------------QYPEVESIR-YPKA---GDPNP---- 156 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------------SS-EEEEEE---BT---TS-------
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------------cCCcccccc-cCCC---CCcCC----
Confidence 12357889999999987644 34455554431110000 001233333 3222 11111
Q ss_pred CCeEEEEEcCCCccceee-e--cCCCCCceEEEEEcCCCCEEEEEecC-----CcEEEEeCCCCCcccccccCCCCCe--
Q 000861 963 NCGIHLWDTRSNSNTWTL-K--AIPEEGYVSSLVTGPCGNWFVSGSSR-----GVLTLWDLRFLVPVNSWQYSQVCPI-- 1032 (1249)
Q Consensus 963 dg~I~iwDlrt~~~~~~l-~--~~~h~~~I~sl~~spdg~~L~sgs~d-----G~I~lWDlr~~~~l~s~~~~~~~~I-- 1032 (1249)
.-.+.++|+.+++....- . .......+..+.|.+++..++..-.+ ..+.++|..++...........+.|
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 124777899888764211 1 12346789999999999844443222 2377778877655433332233332
Q ss_pred -eEEEEEc-CCCCCcccCCCCCEEEEEECCCe--EEEEECCCCc
Q 000861 1033 -EKMCLFV-PPPNAAVSTTARPLIYVAAGCNE--VSLWNAENGS 1072 (1249)
Q Consensus 1033 -~~l~~~s-p~g~~~~~~~~~~~l~t~s~Dg~--I~vWDl~tg~ 1072 (1249)
....+ . +++. .+++....+|- |.+++...+.
T Consensus 237 ~~~~~~-~~~~~~--------~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 237 YDPPHF-LGPDGN--------EFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp SSEEEE--TTTSS--------EEEEEEETTSSEEEEEEETTSSE
T ss_pred eccccc-ccCCCC--------EEEEEEEcCCCcEEEEEcccccc
Confidence 24444 3 4444 35666666664 5556665554
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.049 Score=51.76 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=70.8
Q ss_pred eEEEEEec-CC---CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE
Q 000861 886 ALCTMMLR-HS---AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST 961 (1249)
Q Consensus 886 V~sl~fsp-dg---~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs 961 (1249)
|++++++. ++ +.|++||.|..|++|+-+ ..+..+. ..+.|++++.+.+. .++++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------------e~~~Ei~-e~~~v~~L~~~~~~-----~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------------EIVAEIT-ETDKVTSLCSLGGG-----RFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------------cEEEEEe-cccceEEEEEcCCC-----EEEEEe
Confidence 66777766 22 689999999999999876 1233333 34668888744443 899999
Q ss_pred CCCeEEEEEcCCCccceeeecCCCCCceEEEEEcC-C--C-CEEEEEecCCcEEE
Q 000861 962 QNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGP-C--G-NWFVSGSSRGVLTL 1012 (1249)
Q Consensus 962 ~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~sp-d--g-~~L~sgs~dG~I~l 1012 (1249)
.+|+|-+|+- ....|..+. ...++++++.. + | .-|++|-++|.|.+
T Consensus 61 ~NGTVGvY~~--~~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 61 ANGTVGVYDR--SQRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCEEEEEeC--cceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 9999999975 556777764 33466665433 3 3 57999999998753
No 402
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.69 E-value=0.079 Score=63.01 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=108.1
Q ss_pred EEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccc--cceeeEeeccCCceEEEEEec-----CC---C
Q 000861 827 LVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDIS--FRSRLTYHLEGSRALCTMMLR-----HS---A 896 (1249)
Q Consensus 827 lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~--~~~~~t~~~h~~~V~sl~fsp-----dg---~ 896 (1249)
+..-++...++|++++.|.-| |+|.|..+|.+.|-|++....... .+....-......|+++.|.- |+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 455666678999999998555 999999999999999976542211 000000011234688888873 33 3
Q ss_pred EEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCC-----------------CccEEEE
Q 000861 897 QVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNC-----------------ASHMFMY 959 (1249)
Q Consensus 897 ~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~-----------------~g~~L~s 959 (1249)
++++|+..|.+.+|.+..... +. |.- ........+.+.+..+..|+.+.. .-+.++.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~--g~---f~v-~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSN--GR---FSV-QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GG--G----EEE-EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEEEEeCCCCEEEEEEecCCC--Cc---eEE-EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 788999999999999862111 11 110 111112345667777665643310 0123455
Q ss_pred EECCCeEEEEEcCCCccceeeecCCCCCceEEEEE-----cCCCCEEEEEecCCcEEEEeCCCCCcccccccCCC---CC
Q 000861 960 STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-----GPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQV---CP 1031 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~-----spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~---~~ 1031 (1249)
...+..|+++...+.+...... ...-....+++ ...+..|++-..+|.+++|.+-.-+.+.....+.. ..
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRR 308 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred EEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccc
Confidence 5567899999998877655442 12223333444 23567888899999999999988777766554211 12
Q ss_pred eeEEEEEcCCCC
Q 000861 1032 IEKMCLFVPPPN 1043 (1249)
Q Consensus 1032 I~~l~~~sp~g~ 1043 (1249)
+....+ .++|.
T Consensus 309 ~~~ssi-s~~Gd 319 (395)
T PF08596_consen 309 LSSSSI-SRNGD 319 (395)
T ss_dssp HTT-EE--TTS-
T ss_pred ccccEE-CCCCC
Confidence 334455 66665
No 403
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.68 E-value=0.045 Score=69.36 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=95.6
Q ss_pred CEEEEE-eCCCeEEEEEccccccCCCccccccCccceeeecCCCCc-EEEEEEecCCCC----CccEEEEEECCCeEEEE
Q 000861 896 AQVVVG-ACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGA-IVTLVNYNTDNC----ASHMFMYSTQNCGIHLW 969 (1249)
Q Consensus 896 ~~Lasg-s~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~-V~~l~~fs~d~~----~g~~L~sgs~dg~I~iw 969 (1249)
+.|+.- .....|+-.|++ .|++ +..|+.+... |..++ |+.. +....+.|-.+..+..|
T Consensus 494 ~mil~~~~~~~~ly~mDLe-----~GKV--------V~eW~~~~~~~v~~~~---p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLE-----RGKV--------VEEWKVHDDIPVVDIA---PDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ceEeecCCCCCceEEEecC-----CCcE--------EEEeecCCCcceeEec---ccccccccCCCceEEEECCCceEEe
Confidence 344443 334667777777 3554 7777776643 55443 3210 12356778889999999
Q ss_pred EcCCCc--ccee-eecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcc
Q 000861 970 DTRSNS--NTWT-LKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAV 1046 (1249)
Q Consensus 970 Dlrt~~--~~~~-l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~ 1046 (1249)
|+|-.. .++. ..........+|++-+.+| ++|+|+.+|.|++|| +.+..-++.-.+-+.+|..|.. +.+|+
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDv-t~DGk--- 631 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDV-TADGK--- 631 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEe-cCCCc---
Confidence 999643 2211 1111234467788888777 889999999999999 4565555544456789999999 99998
Q ss_pred cCCCCCEEEEEECCCeEEEEECC
Q 000861 1047 STTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1047 ~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
||+ |+.+..+.+++..
T Consensus 632 ------wil-aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 632 ------WIL-ATCKTYLLLIDTL 647 (794)
T ss_pred ------EEE-EeecceEEEEEEe
Confidence 554 4556678888753
No 404
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.64 E-value=0.097 Score=49.79 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=69.3
Q ss_pred ccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCee
Q 000861 954 SHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE 1033 (1249)
Q Consensus 954 g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~ 1033 (1249)
.+.|++|+.|..|++|+-. +.+..+. ..+.|++++-... ..++.|..+|+|-+|+- ..+.|+......+.
T Consensus 15 ~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~----~~RlWRiKSK~~~~ 84 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDR----SQRLWRIKSKNQVT 84 (111)
T ss_pred cceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeC----cceeeeeccCCCeE
Confidence 4589999999999999744 4555554 3678888887766 57899999999999986 33344444555678
Q ss_pred EEEEEcCCCCCcccCCCCCEEEEEECCCeEE
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVS 1064 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~ 1064 (1249)
++.++..++. ..+.|++|-.+|.|-
T Consensus 85 ~~~~~D~~gd------G~~eLI~GwsnGkve 109 (111)
T PF14783_consen 85 SMAFYDINGD------GVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEcCCCC------CceEEEEEecCCeEE
Confidence 8887665554 345688888888764
No 405
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.62 E-value=0.023 Score=72.25 Aligned_cols=199 Identities=17% Similarity=0.116 Sum_probs=150.8
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcC---ChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCC
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFI---DDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPP 270 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~---~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~ 270 (1249)
-+-..+...+-+ +-|.-|..|++-+....+.- ..+.....+..++-..+.|.+-.|-..|+.+|..+...+...
T Consensus 253 ki~~~l~t~~~s-~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-- 329 (815)
T KOG1820|consen 253 KITKNLETEMLS-KKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-- 329 (815)
T ss_pred hcChHHHHhhhc-cchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--
Confidence 355566677778 99999999998777665433 355677788888888999999999999999999999887642
Q ss_pred CCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccc
Q 000861 271 SDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLN 350 (1249)
Q Consensus 271 ~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1249)
..-|..-++|.|-.-..|.-..+|-++-.|+-....+..
T Consensus 330 --~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------------------------------------- 368 (815)
T KOG1820|consen 330 --FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------------------------------------- 368 (815)
T ss_pred --hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------------------------------------
Confidence 334445577888887888888899888777766554211
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcC----ccccchhhhhhHhhhhcCCCHHHHHHHHhhh
Q 000861 351 ADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFG----QRQSNDFLLPILPAFLNDRDEQLRAVFYGQI 426 (1249)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G----~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i 426 (1249)
...+.+.+.+.+ ++-.|.+|.-...=+.+.-.-.| ...+.+.+.||++.-.||++.-||.|-++.+
T Consensus 369 --------l~~~~~~I~e~l--k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 369 --------LSKMSEAILEAL--KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred --------HHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 034555666777 45678888775544444444444 3467888999999999999999999999999
Q ss_pred hhhhcccChhhHHHhHHHHH
Q 000861 427 VYVCFFVGERSVEEYLLPYI 446 (1249)
Q Consensus 427 ~~la~~lG~~~~~~~llPll 446 (1249)
..+-..+|.+.++++|-++-
T Consensus 439 ~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 439 AAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHhhHHHHHHHHHhhc
Confidence 99999999999877766544
No 406
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.023 Score=67.00 Aligned_cols=261 Identities=18% Similarity=0.148 Sum_probs=162.5
Q ss_pred CCchhHHHHHHHHHHHhhcC---ChHHHHHhhHH-HHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhh
Q 000861 207 KLPHYRRAAILLLKSSSLFI---DDEDRLQRVLP-HVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILP 282 (1249)
Q Consensus 207 ~~~~~r~~a~~ll~~l~~~~---~de~~l~~ilP-~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP 282 (1249)
|.-+-|-.|+--+..+-.-+ +|-.+++.++. ..-.+..-+.+.-|..++-.++.+.-.+. ..++. +.+.|+|
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg---~~~~~-Y~~~iv~ 87 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG---IKDAG-YLEKIVP 87 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc---cccHH-HHHHhhH
Confidence 33333444443444444433 44556666665 22333344566666676666665533332 23443 8888999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHH
Q 000861 283 MLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSI 362 (1249)
Q Consensus 283 ~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 362 (1249)
.+-...+|+...||.-..+.+-.+|+.++. +.-...+.|
T Consensus 88 Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-----------------------------------------~v~~~Fn~i 126 (675)
T KOG0212|consen 88 PVLNCFSDQDSQVRYYACESLYNIAKVAKG-----------------------------------------EVLVYFNEI 126 (675)
T ss_pred HHHHhccCccceeeeHhHHHHHHHHHHhcc-----------------------------------------CcccchHHH
Confidence 999999999999999999999999888760 001112344
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccch----hhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhH
Q 000861 363 AEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSND----FLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSV 438 (1249)
Q Consensus 363 ~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d----~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~ 438 (1249)
...+-.|.. |++..||-+. +-+.+|-+-+-.+.... .++|.+..=+++.++..|..+.+-|--+-..=+-+.+
T Consensus 127 FdvL~klsa--Dsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 127 FDVLCKLSA--DSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHhc--CCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 445555553 6677777542 22333333333333333 4445555555556999999999887766555454433
Q ss_pred --HHhHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCCCchH-HHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCc
Q 000861 439 --EEYLLPYIEQALSDATEAVIVNALDCLAILC-KSGYLRKR-ILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGA 514 (1249)
Q Consensus 439 --~~~llPll~q~L~D~~e~V~~~~l~~l~~l~-~~gl~~~~-~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~ 514 (1249)
-..+++-+.++|+|+.++||.-+=.+|.++. |+.--... ..-+.++..++-+..|+.-|+.-++.-|..+-+.-|.
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 3568999999999999999966555555533 22111001 1225777788888999999999999999888876665
Q ss_pred c
Q 000861 515 V 515 (1249)
Q Consensus 515 ~ 515 (1249)
+
T Consensus 284 ~ 284 (675)
T KOG0212|consen 284 D 284 (675)
T ss_pred c
Confidence 4
No 407
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.12 Score=61.17 Aligned_cols=294 Identities=15% Similarity=0.155 Sum_probs=184.1
Q ss_pred CCchhHHHHHHHHHHHhhcCChHHHHHh---h-HHHHHHhcC-CCChhHHHHHHHHHHHHhccccccCCCCCcchhhchh
Q 000861 207 KLPHYRRAAILLLKSSSLFIDDEDRLQR---V-LPHVIAMLS-DPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYIL 281 (1249)
Q Consensus 207 ~~~~~r~~a~~ll~~l~~~~~de~~l~~---i-lP~~~~ll~-D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyil 281 (1249)
+-...|+.++..+...++..++|...+. + .-.++.-++ .+...||.+|+.+|..-|..|+..=--+. =-.|++
T Consensus 146 qp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~--erNy~m 223 (858)
T COG5215 146 QPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEE--ERNYFM 223 (858)
T ss_pred CchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchh--hhchhh
Confidence 4455688888888888888888654332 2 222333344 46889999999999998887764311111 136888
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHH
Q 000861 282 PMLSMLPDDPEESVRICYASNIAKLALTAYGFLV--HSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLR 359 (1249)
Q Consensus 282 P~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1249)
..+....+-++..+-.+.=-|+.+|-..-++|.. |-++|.+ +... -+.+-| |+..-...
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~a---lt~~---------------~mks~n-d~va~qav 284 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAA---LTGR---------------FMKSQN-DEVAIQAV 284 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---------------HhcCcc-hHHHHHHH
Confidence 8888888888888999988999999888887754 2222221 0000 000000 11111101
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcC-------CCHHHHHHHHhhhhhhhcc
Q 000861 360 KSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLND-------RDEQLRAVFYGQIVYVCFF 432 (1249)
Q Consensus 360 ~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD-------~~w~lR~a~~~~i~~la~~ 432 (1249)
+.-.-++++=. | -+.-.+-+...+-=..=|-+.-..| +||-|..+|.. .||.+-+|-..++-..|..
T Consensus 285 EfWsticeEei---d--~~~e~~~~pe~p~qn~~fa~aav~d-vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~ 358 (858)
T COG5215 285 EFWSTICEEEI---D--GEMEDKYLPEVPAQNHGFARAAVAD-VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL 358 (858)
T ss_pred HHHHHHHHHHh---h--hHHHHhhcccCchhhcchHHHHHHH-HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH
Confidence 11111121100 0 0000001111111111122222222 77888877753 4999999999999899999
Q ss_pred cChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhh
Q 000861 433 VGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYL--RKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 433 lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~--~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~ 510 (1249)
.|..-++ -.+-+++|-+.-+...=|+++...+....+-.-. ..+..-+.+|.+..+..+|..|+...+...+..+|.
T Consensus 359 ~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 359 KGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred hhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH
Confidence 9987764 5899999999999999999999998886553111 112344677888888889999999999999999998
Q ss_pred cCCccceeeE-eeeccchh
Q 000861 511 SLGAVDSYVF-LAPVIRPF 528 (1249)
Q Consensus 511 ~l~~~d~~~~-l~P~l~~~ 528 (1249)
.+...---|. |.|.+...
T Consensus 438 ~va~~i~p~~Hl~~~vsa~ 456 (858)
T COG5215 438 HVAMIISPCGHLVLEVSAS 456 (858)
T ss_pred HHHHhcCccccccHHHHHH
Confidence 8876655555 44444433
No 408
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.53 E-value=0.83 Score=55.03 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=98.3
Q ss_pred cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCC
Q 000861 858 TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK 937 (1249)
Q Consensus 858 tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h 937 (1249)
.|.||+..... ..++.-..+.|.++.|..+. .|++-..||.+++||+. |+. .|.-...+......
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~------G~~-~fsl~~~i~~~~v~ 126 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF------GEF-QFSLGEEIEEEKVL 126 (410)
T ss_pred EEEEECCCCCE-------eEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC------Cce-eechhhhccccCcc
Confidence 48888876543 22222223789999998865 56666789999999986 332 22222223222222
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc-cceee-ecCC-------CCCceEEEEEcCCCCEEEEEecCC
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS-NTWTL-KAIP-------EEGYVSSLVTGPCGNWFVSGSSRG 1008 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~-~~~~l-~~~~-------h~~~I~sl~~spdg~~L~sgs~dG 1008 (1249)
+..+.... +..+ | ++.-+.++.+.+..--... ....+ ..+. +.....-..++.+....+....++
T Consensus 127 e~~i~~~~-~~~~---G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~ 200 (410)
T PF04841_consen 127 ECRIFAIW-FYKN---G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE 200 (410)
T ss_pred cccccccc-cCCC---C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC
Confidence 33333333 3223 2 3333445555544322211 11111 1010 111100123455555666666666
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.+.+.+-..... . ...+++..|++ +|+++ +++.-..+|.+.+.+..-.++...+.
T Consensus 201 ~i~~i~~~~~~~---i--~~~~~i~~iav-Spng~---------~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 201 TIYIIDENSFKQ---I--DSDGPIIKIAV-SPNGK---------FIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred EEEEEEcccccc---c--cCCCCeEEEEE-CCCCC---------EEEEEECCCCEEEEECcccceeEEee
Confidence 666444322212 1 23458999999 99998 88888999999888765454444443
No 409
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.52 E-value=0.0039 Score=45.19 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=23.3
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHh
Q 000861 442 LLPYIEQALSDATEAVIVNALDCLAILCK 470 (1249)
Q Consensus 442 llPll~q~L~D~~e~V~~~~l~~l~~l~~ 470 (1249)
|+|.+.++|.|+++.||.+|+.+|..+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 67888888888888888888888888776
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.47 E-value=1.4 Score=49.89 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCc--c
Q 000861 845 HDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGN--V 922 (1249)
Q Consensus 845 pdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~--~ 922 (1249)
..++.++.|.++| +.+++...... . .-..+...|..+...++-+.+++-+ |+.+++++++........ .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~-----~--~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK-----P--TRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc-----c--eeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence 4577899999999 88998832221 1 1112223499999999887777654 599999998722111100 0
Q ss_pred ccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCC-----ccceeeecCCCCCceEEEEEcCC
Q 000861 923 EKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSN-----SNTWTLKAIPEEGYVSSLVTGPC 997 (1249)
Q Consensus 923 ~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~-----~~~~~l~~~~h~~~I~sl~~spd 997 (1249)
...........+. ....+...+.-.... +...+.......|.+|..... .....+.. ...+.+++|.
T Consensus 76 ~~~~~~~~~~~~~-~~~~v~~f~~~~~~~--~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~-- 147 (275)
T PF00780_consen 76 AFPKSRSLPTKLP-ETKGVSFFAVNGGHE--GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL-- 147 (275)
T ss_pred ccccccccccccc-ccCCeeEEeeccccc--cceEEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--
Confidence 0000000000111 111222221001111 334444445569999888764 23334443 5788999998
Q ss_pred CCEEEEEecCCcEEEEeCCCCCccc
Q 000861 998 GNWFVSGSSRGVLTLWDLRFLVPVN 1022 (1249)
Q Consensus 998 g~~L~sgs~dG~I~lWDlr~~~~l~ 1022 (1249)
++.++.|..++ ..+.|+.++....
T Consensus 148 ~~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 148 GNKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred CCEEEEEeCCc-eEEEecCCCCceE
Confidence 56788887654 6788988665543
No 411
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.17 Score=66.37 Aligned_cols=264 Identities=20% Similarity=0.131 Sum_probs=168.2
Q ss_pred hhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhc---CCCChhHHHHH---HHHHHHHhc-cc
Q 000861 193 VLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAML---SDPAAIVRCAA---LETLCDILP-LV 265 (1249)
Q Consensus 193 ~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll---~D~~~~VR~~A---~~~l~~~l~-~v 265 (1249)
.-|+-=++-++-+ +-||+|-++|--|..|-+.=+-+...+.+..|+..++ +|--..||.|| ++.|++++- .+
T Consensus 1038 neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1038 NEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344445555666 9999999999999998887776767777777777775 46677899887 455555553 33
Q ss_pred cccCCCCCcchhhchhhhcc--CCCCCCchhHHHHHHHHHHHHHHHHHHHHH-----HHHHh-----------------h
Q 000861 266 RNFPPSDAKIFPEYILPMLS--MLPDDPEESVRICYASNIAKLALTAYGFLV-----HSIRL-----------------S 321 (1249)
Q Consensus 266 ~~~~~~~~~if~eyilP~l~--~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~-----~~~~~-----------------~ 321 (1249)
+...+..++-+.+-|||.|- ... ..-..||..--.-+.+|+..+++.+- +.-.+ +
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHh
Confidence 34455578889999999983 334 34467998888888899888776431 10000 0
Q ss_pred hcc----ccccc--CCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcC
Q 000861 322 EAG----VLDKL--SAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFG 395 (1249)
Q Consensus 322 ~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G 395 (1249)
..+ .+|.. +.+.+++ -.++-+.-.. | .-....+++.|.+.+|+.+ --.-.-|.....=|.-|..-+|
T Consensus 1196 ~~~~e~ealDt~R~s~akssp--mmeTi~~ci~--~--iD~~vLeelip~l~el~R~-sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1196 LINIETEALDTLRASAAKSSP--MMETINKCIN--Y--IDISVLEELIPRLTELVRG-SVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred hhhhHHHHHHHHHHhhhcCCc--HHHHHHHHHH--h--hhHHHHHHHHHHHHHHHhc-cCCCCcchhHHHHHHHHHHHhc
Confidence 000 00000 0000000 0000000011 1 1112345677777777742 1122334444444555555577
Q ss_pred cccc--chhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcH--HHHHHHHHHH
Q 000861 396 QRQS--NDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATE--AVIVNALDCL 465 (1249)
Q Consensus 396 ~~~~--~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e--~V~~~~l~~l 465 (1249)
.|.+ .+.+|..+.+-+.|++..+|.+|..++..++.+=-...++.+|--++.-.+.+.+. .++.+.+-.+
T Consensus 1269 ~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~I 1342 (1702)
T KOG0915|consen 1269 SEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNI 1342 (1702)
T ss_pred cccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHH
Confidence 7654 57799999999999999999999999999999999988888888777777777766 7777766643
No 412
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.012 Score=70.22 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=74.9
Q ss_pred cEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCce-EEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q 000861 940 AIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYV-SSLVTGPCGNWFVSGSSRGVLTLWDLRFL 1018 (1249)
Q Consensus 940 ~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I-~sl~~spdg~~L~sgs~dG~I~lWDlr~~ 1018 (1249)
.+.-+. |+|. -..+|+++.+|.|.+..+. .+.+|++..+ ...+ +++||.|||+.+++|-.||+|++-|...+
T Consensus 22 ~i~~~e-wnP~---~dLiA~~t~~gelli~R~n-~qRlwtip~p--~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 22 NIKRIE-WNPK---MDLIATRTEKGELLIHRLN-WQRLWTIPIP--GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ceEEEE-EcCc---cchhheeccCCcEEEEEec-cceeEeccCC--CCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 355566 9998 6799999999999999887 7788888653 3344 49999999999999999999999999999
Q ss_pred CcccccccCCCCCeeEEEE
Q 000861 1019 VPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 1019 ~~l~s~~~~~~~~I~~l~~ 1037 (1249)
..+.........+|.++.|
T Consensus 95 ~~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIW 113 (665)
T ss_pred Cceeccccccccchheeec
Confidence 8888754445567777777
No 413
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.30 E-value=0.0021 Score=76.13 Aligned_cols=155 Identities=15% Similarity=0.279 Sum_probs=100.5
Q ss_pred ceEEEEEecCC--CEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE-
Q 000861 885 RALCTMMLRHS--AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST- 961 (1249)
Q Consensus 885 ~V~sl~fspdg--~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs- 961 (1249)
.+.|+++.-+. ..+++|..+|.|-+-.+...- .. .-....++...+++++ |++-. ..+|++|-
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---------dS--s~E~tp~~ar~Ct~lA-wneLD--tn~LAagld 123 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---------DS--SAEVTPGYARPCTSLA-WNELD--TNHLAAGLD 123 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcc---------cc--cceecccccccccccc-ccccc--HHHHHhhhh
Confidence 35666665533 367788889999998887211 10 1122344667888998 87762 44777663
Q ss_pred ---CCCeEEEEEcCCC--c--cceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCC-cccccccCCCCCee
Q 000861 962 ---QNCGIHLWDTRSN--S--NTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLV-PVNSWQYSQVCPIE 1033 (1249)
Q Consensus 962 ---~dg~I~iwDlrt~--~--~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~-~l~s~~~~~~~~I~ 1033 (1249)
.|..+.|||+.++ . ..+.+.. +......++||..+.+.+++|.....+.++|+|... ....+ ....+.
T Consensus 124 khrnds~~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vq 199 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQ 199 (783)
T ss_pred hhcccCCccceecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcc
Confidence 3678999999876 2 2222322 234456689999999999999999999999998332 22222 222455
Q ss_pred EEEEEcC-CCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 1034 KMCLFVP-PPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 1034 ~l~~~sp-~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
.+.+ .| .+. ++ +...||.|.+||.
T Consensus 200 G~tV-dp~~~n---------Y~-cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 200 GITV-DPFSPN---------YF-CSNSDGDIAIWDT 224 (783)
T ss_pred ccee-cCCCCC---------ce-eccccCceeeccc
Confidence 6666 77 443 44 4455999999994
No 414
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.29 E-value=0.3 Score=60.06 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=105.6
Q ss_pred EcCCCCEEE-EEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCC----eEEEEEcccccc
Q 000861 843 ISHDHSFFV-SASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDG----IIHMFSVDHISR 917 (1249)
Q Consensus 843 ~spdg~~la-Tgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg----~I~vwdv~~~~~ 917 (1249)
++|||+.+. +.-..+.+.+.|..+.+. ..++... +....+.++++|+++++++.+. ++..-+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV------~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~---- 268 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEV------AWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA---- 268 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceE------EEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccc----
Confidence 456776443 333456777778877652 2222222 2346678899999988876432 12111111
Q ss_pred CCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC-----CccceeeecCCCCCceEEE
Q 000861 918 GLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS-----NSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 918 ~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt-----~~~~~~l~~~~h~~~I~sl 992 (1249)
.. ..+..+.... +..+.++ |++... .++.|.++|.++ .+....+.. ......+
T Consensus 269 ---e~------d~~vvfni~~-----iea~vkd---GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV 326 (635)
T PRK02888 269 ---ER------DWVVVFNIAR-----IEEAVKA---GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGV 326 (635)
T ss_pred ---cC------ceEEEEchHH-----HHHhhhC---CCEEEE--CCCEEEEEECCccccCCcceEEEEEC---CCCccce
Confidence 00 0000010000 0013344 555554 367899999998 344444433 5567789
Q ss_pred EEcCCCCEEEEEe-cCCcEEEEeCCCCCc------------ccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 993 VTGPCGNWFVSGS-SRGVLTLWDLRFLVP------------VNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 993 ~~spdg~~L~sgs-~dG~I~lWDlr~~~~------------l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
.++|||+++++++ .+++|.+.|+...+. +..... ...-...+| .++|. ...+.--
T Consensus 327 ~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaF-Dg~G~---------aytslf~ 394 (635)
T PRK02888 327 NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAF-DGRGN---------AYTTLFL 394 (635)
T ss_pred EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEE-CCCCC---------EEEeEee
Confidence 9999999877655 589999999987543 222222 122335567 66665 5555667
Q ss_pred CCeEEEEECCC
Q 000861 1060 CNEVSLWNAEN 1070 (1249)
Q Consensus 1060 Dg~I~vWDl~t 1070 (1249)
|..|..||+.+
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 89999999975
No 415
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.27 E-value=0.087 Score=63.60 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=126.5
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhc-CCCChhHHHHHHHHHHHHhccc-cccCCCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAML-SDPAAIVRCAALETLCDILPLV-RNFPPSD 272 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll-~D~~~~VR~~A~~~l~~~l~~v-~~~~~~~ 272 (1249)
++.-+.....+...+..|..+++++..+.....++..++.++..+..-+ ....+.-|..+++.+.=+.+-+ -...|
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~-- 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP-- 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc--
Confidence 4444555555556678888999999888888877777778877777766 5567777777777765554422 11111
Q ss_pred CcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchh
Q 000861 273 AKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNAD 352 (1249)
Q Consensus 273 ~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1249)
. -..++..|-.+..|+ .+....|..+.-|..-
T Consensus 268 --~-~~~~~~~L~~lL~~~--~~g~~aA~~f~il~~d------------------------------------------- 299 (415)
T PF12460_consen 268 --L-ATELLDKLLELLSSP--ELGQQAAKAFGILLSD------------------------------------------- 299 (415)
T ss_pred --h-HHHHHHHHHHHhCCh--hhHHHHHHHHhhHhcC-------------------------------------------
Confidence 1 112333333333331 2333333333222110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcc
Q 000861 353 VQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFF 432 (1249)
Q Consensus 353 ~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~ 432 (1249)
...+++ +.....|| .+=+++.=..++|.|+....+.+-..|..+..++..|...
T Consensus 300 -------------~~~~l~-~~~~a~vk------------lLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~ 353 (415)
T PF12460_consen 300 -------------SDDVLN-KENHANVK------------LLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKN 353 (415)
T ss_pred -------------cHHhcC-ccccchhh------------hHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh
Confidence 001111 12223333 2234455566788888888877777888888888888888
Q ss_pred cChhhHH---HhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC
Q 000861 433 VGERSVE---EYLLPYIEQALSDATEAVIVNALDCLAILCKSG 472 (1249)
Q Consensus 433 lG~~~~~---~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~g 472 (1249)
+..+.+. ..|+|+++|+|.=++..|+.++|+.|..+++..
T Consensus 354 vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 354 VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8877655 459999999999899999999999999998863
No 416
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.26 E-value=1.1 Score=55.73 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=44.2
Q ss_pred eEEEEEcCCCccceeeecCCCCCc-------eEEEEEcCCCC---EEEEEecCCcEEEEeCCCCCccc
Q 000861 965 GIHLWDTRSNSNTWTLKAIPEEGY-------VSSLVTGPCGN---WFVSGSSRGVLTLWDLRFLVPVN 1022 (1249)
Q Consensus 965 ~I~iwDlrt~~~~~~l~~~~h~~~-------I~sl~~spdg~---~L~sgs~dG~I~lWDlr~~~~l~ 1022 (1249)
.|...|++||+..|.++...|... ..-+.+..+|+ .++.++.+|.+.+.|-++|+++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 789999999999999987655321 12222334665 78899999999999999998873
No 417
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.22 E-value=1.1 Score=49.75 Aligned_cols=173 Identities=11% Similarity=0.086 Sum_probs=93.2
Q ss_pred eeccCCceEEEEEecCCCE-EEEEeCCCeEEEEEccccccCCCccccccCccceeeecCC-CCcEEEEEEecCCCCCccE
Q 000861 879 YHLEGSRALCTMMLRHSAQ-VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK-EGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 879 ~~~h~~~V~sl~fspdg~~-Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h-~~~V~~l~~fs~d~~~g~~ 956 (1249)
+.+-...+..++|.|+++. +++....+.|..++.+ |++ ++.+... .+..-.+. +..+ +.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~------G~v--------lr~i~l~g~~D~EgI~-y~g~---~~~ 78 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD------GKV--------LRRIPLDGFGDYEGIT-YLGN---GRY 78 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------E--------EEEEE-SS-SSEEEEE-E-ST---TEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC------CCE--------EEEEeCCCCCCceeEE-EECC---CEE
Confidence 3343446999999997664 4555666777666655 544 4444332 34566777 6555 445
Q ss_pred EEEEECCCeEEEEEcCCCcc------ceeee--cC-CCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC---CCccc--
Q 000861 957 FMYSTQNCGIHLWDTRSNSN------TWTLK--AI-PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF---LVPVN-- 1022 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~------~~~l~--~~-~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~---~~~l~-- 1022 (1249)
+++.-.++.+.++++..... ...+. .. .+...+-.++|++.++.|+++....-..+|.++. ...+.
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 55555689999999843221 11222 22 2345689999999988888888877666666543 11111
Q ss_pred ---ccc--cCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1023 ---SWQ--YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1023 ---s~~--~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
.+. ......+..+.+ +|... .+++....+..+..+| .+|+.+..+.-
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~-~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L 210 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSY-DPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSL 210 (248)
T ss_dssp E-HHHH-HT--SS---EEEE-ETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-
T ss_pred cccccccccceeccccceEE-cCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEe
Confidence 111 112335778888 87754 3566666678899999 56887766653
No 418
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.18 E-value=0.27 Score=59.31 Aligned_cols=142 Identities=12% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC
Q 000861 883 GSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ 962 (1249)
Q Consensus 883 ~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~ 962 (1249)
......+.++|+|+.+++ +.||.-.++... + .+.. ..+.....+ |.+. + .+++-..
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~------~----------~r~k--~~G~g~~~v-w~~~---n-~yAv~~~ 87 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTAL------A----------WRNK--AFGSGLSFV-WSSR---N-RYAVLES 87 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETT------T----------TEEE--EEEE-SEEE-E-TS---S-EEEEE-T
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEcc------C----------Cccc--ccCceeEEE-EecC---c-cEEEEEC
Confidence 345789999999999988 557878888743 1 0110 123344555 7765 2 5777777
Q ss_pred CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCC
Q 000861 963 NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 963 dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g 1042 (1249)
++.|.++.--..+....++.+ ..+..+.. |..|...+.+ .|.+||..+++.+..+.. .+|..+.| +++|
T Consensus 88 ~~~I~I~kn~~~~~~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~W-s~~g 156 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIW-SDDG 156 (443)
T ss_dssp TS-EEEEETTEE-TT-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE--TTS
T ss_pred CCeEEEEEcCccccceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEE-ECCC
Confidence 889999633233333344432 23444433 7777766544 899999999999998763 24899999 9998
Q ss_pred CCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 1043 NAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1043 ~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
. +++..+ +..+.+++..
T Consensus 157 ~---------~val~t-~~~i~il~~~ 173 (443)
T PF04053_consen 157 E---------LVALVT-KDSIYILKYN 173 (443)
T ss_dssp S---------EEEEE--S-SEEEEEE-
T ss_pred C---------EEEEEe-CCeEEEEEec
Confidence 8 666665 4577787754
No 419
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.17 E-value=0.14 Score=64.06 Aligned_cols=304 Identities=16% Similarity=0.169 Sum_probs=187.1
Q ss_pred hHHHHHhhhccCCCchh--HHHHHHHHHHHhhcCChHH---HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccC
Q 000861 195 IASLLCSCVRNVKLPHY--RRAAILLLKSSSLFIDDED---RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFP 269 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~--r~~a~~ll~~l~~~~~de~---~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~ 269 (1249)
+++-|.-.+-+ ++..+ |..++-.+..+-.-.+.+. .+.-+.|.++....|+-..|-+.|+....++++.+....
T Consensus 477 lvpgI~~~l~D-kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~ 555 (1233)
T KOG1824|consen 477 LVPGIIYSLND-KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQ 555 (1233)
T ss_pred cchhhhhhcCC-ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccC
Confidence 55556666666 55554 6666665555544455543 567788999999999999999999999999999998776
Q ss_pred C---CCCcchhhchhhh-ccCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchh
Q 000861 270 P---SDAKIFPEYILPM-LSML-PDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSV 344 (1249)
Q Consensus 270 ~---~~~~if~eyilP~-l~~l-~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1249)
| .|++-|...++-. ++.| ++|.++.||-..-.|++.+-...+.|+..
T Consensus 556 ~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~---------------------------- 607 (1233)
T KOG1824|consen 556 PPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN---------------------------- 607 (1233)
T ss_pred CCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh----------------------------
Confidence 6 4544443333333 2333 47888999999999999886665533322
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh---cCccccchhhhhhHhhhhcCCCHHHHHH
Q 000861 345 QLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF---FGQRQSNDFLLPILPAFLNDRDEQLRAV 421 (1249)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f---~G~~~~~d~lLp~l~t~lnD~~w~lR~a 421 (1249)
.....++++.+=+ .+-.-|.+.++-+..++.- |...-.-+.++|++.+|+.-.+..+|.+
T Consensus 608 -------------eL~~~L~il~eRl----~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~ 670 (1233)
T KOG1824|consen 608 -------------ELPRTLPILLERL----GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLA 670 (1233)
T ss_pred -------------hhHHHHHHHHHHH----hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445555544 1234455555443322211 1112234679999999999999999999
Q ss_pred HHhhhhhhhcccC---hhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhcccccCCCH--
Q 000861 422 FYGQIVYVCFFVG---ERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRK-RILLEMIERAFPLLCYPSQ-- 495 (1249)
Q Consensus 422 ~~~~i~~la~~lG---~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~-~~~~~l~~~~~~ll~hpn~-- 495 (1249)
+...+-.+....| +...-+.+|--+-..+++++-.|-..++.+|+.+.....-.- ..--.+++.++.++..|=.
T Consensus 671 ~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg 750 (1233)
T KOG1824|consen 671 TLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQG 750 (1233)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccc
Confidence 9988887775554 233345566666677888899999999999999877521100 1112466777777776611
Q ss_pred HHHHHHHHHH-HHHhhcCCccceeeEeeeccchhhhcCCCCcCCHHHHHhccCCCCcHHHHHHH
Q 000861 496 WVRRSVVTFI-AASSESLGAVDSYVFLAPVIRPFLRRQPASLASVKALLSCLKPPVSREVFYQV 558 (1249)
Q Consensus 496 wiR~~~~~~i-~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i~~~~~ll~~l~~PlsR~vf~~~ 558 (1249)
-.=.+++.|. +.+-...+.-+ |-.+...+..||+.- ...-++|+.|...
T Consensus 751 ~al~~~l~~f~alV~t~~~~l~-----y~~l~s~lt~PV~~~---------~~~~l~kqa~~si 800 (1233)
T KOG1824|consen 751 GALSALLLFFQALVITKEPDLD-----YISLLSLLTAPVYEQ---------VTDGLHKQAYYSI 800 (1233)
T ss_pred hHHHHHHHHHHHHHhcCCCCcc-----HHHHHHHHcCCcccc---------cccchhHHHHHHH
Confidence 1112222222 22222222222 444555667777653 1225667776543
No 420
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.067 Score=64.29 Aligned_cols=237 Identities=15% Similarity=0.045 Sum_probs=156.4
Q ss_pred cCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhh
Q 000861 268 FPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQ 347 (1249)
Q Consensus 268 ~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1249)
++++-..--.+|++-.+-.+..|....||...++.+-.|.+-
T Consensus 187 ~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-------------------------------------- 228 (823)
T KOG2259|consen 187 VSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-------------------------------------- 228 (823)
T ss_pred cCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--------------------------------------
Confidence 333333344566666666677777777777766666555441
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhc--------CccccchhhhhhHhhhhcCCCHHHH
Q 000861 348 RLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFF--------GQRQSNDFLLPILPAFLNDRDEQLR 419 (1249)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~--------G~~~~~d~lLp~l~t~lnD~~w~lR 419 (1249)
-.|.+.+...-.+++ .|++..||.++++=+.-+.+.. ...+..|..+.-+....+|..|.||
T Consensus 229 --------~kL~~~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VR 298 (823)
T KOG2259|consen 229 --------FKLSKACYSRAVKHL--SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVR 298 (823)
T ss_pred --------ccccHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeee
Confidence 112245555566777 4888999999987654433333 2335667788999999999999999
Q ss_pred HHHHhhhhhhhcccChh----hHHHhHHH--------------------------------------------------H
Q 000861 420 AVFYGQIVYVCFFVGER----SVEEYLLP--------------------------------------------------Y 445 (1249)
Q Consensus 420 ~a~~~~i~~la~~lG~~----~~~~~llP--------------------------------------------------l 445 (1249)
-.-++.+.++- .+..+ ++++.++- -
T Consensus 299 V~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA 377 (823)
T KOG2259|consen 299 VEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGA 377 (823)
T ss_pred ehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccce
Confidence 88887776654 22223 33333333 1
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeecc
Q 000861 446 IEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVI 525 (1249)
Q Consensus 446 l~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l 525 (1249)
++-+|.|+..+||.+|+.+|..|+....--.. .-+.-++-++.+.-.=||.-++..+..|+..+ .+....++.+
T Consensus 378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~---~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---~i~eeql~~i 451 (823)
T KOG2259|consen 378 LVHGLEDEFYEVRRAAVASLCSLATSSPGFAV---RALDFLVDMFNDEIEVVRLKAIFALTMISVHL---AIREEQLRQI 451 (823)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---eecHHHHHHH
Confidence 33358899999999999999999885322222 23444566777888889999999999999884 3445567788
Q ss_pred chhhhcCCCCcCCHHH-HHhccCCCCcHHHHHHHHH
Q 000861 526 RPFLRRQPASLASVKA-LLSCLKPPVSREVFYQVLE 560 (1249)
Q Consensus 526 ~~~l~~~v~~i~~~~~-ll~~l~~PlsR~vf~~~~~ 560 (1249)
..-|.|.-+++ +++. .|-++-+=.....+++++.
T Consensus 452 l~~L~D~s~dv-Re~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 452 LESLEDRSVDV-REALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHhcCHHH-HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 88888887777 4433 2333333444667777765
No 421
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.10 E-value=0.15 Score=61.51 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=87.9
Q ss_pred hhhHhhhhcCCCHHHHHHHHhhhhhhhcccChh--hH------HHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--C
Q 000861 404 LPILPAFLNDRDEQLRAVFYGQIVYVCFFVGER--SV------EEYLLPYIEQALSDATEAVIVNALDCLAILCKSG--Y 473 (1249)
Q Consensus 404 Lp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~--~~------~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~g--l 473 (1249)
+-|++++|+.....+|++|+|.+..+..-.-.+ .. -+-|.-++..-|.|..+.+|.+||+-+.++++.. .
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 578899999999999999999988776433222 22 2568899999999999999999999999999984 4
Q ss_pred CchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcC
Q 000861 474 LRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 474 ~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l 512 (1249)
..++. +++..+..-+++-.--||..++.+.+.+--.-
T Consensus 381 ~~~r~--ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRH--EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHH--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 44444 88888999999999999999999988775433
No 422
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.09 E-value=0.46 Score=54.38 Aligned_cols=210 Identities=15% Similarity=0.220 Sum_probs=120.6
Q ss_pred eEEEEcCCCCEEEEE--ECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEec-CCCEEEEEeCCCeEEEEEcccc
Q 000861 839 NEIAISHDHSFFVSA--SDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR-HSAQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 839 ~~la~spdg~~laTg--s~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp-dg~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
+..+++.||+++... +--..|.|-|+...+. ...+... + |.-..| ..+.|.+-|.||++.-..++..
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv------v~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKV------VGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE------EEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCce------eeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 446778888876654 3445688888877652 1222221 1 222233 2356888899999998888822
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCcccee--eecCC--------C
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWT--LKAIP--------E 985 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~--l~~~~--------h 985 (1249)
|+.. .. .-..+.....++..-..+... +..++..+.+|.|+--|+........ +.... .
T Consensus 168 ----Gk~~--~~--~t~~F~~~~dp~f~~~~~~~~---~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 168 ----GKEA--QK--STKVFDPDDDPLFEHPAYSRD---GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp ----SSEE--EE--EEEESSTTTS-B-S--EEETT---TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred ----CCEe--Ee--eccccCCCCcccccccceECC---CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence 3321 00 112333334444432224444 34677789999999999876543221 11100 1
Q ss_pred CCceEEEEEcCCCCEEEEEecC---C-------cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 986 EGYVSSLVTGPCGNWFVSGSSR---G-------VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 986 ~~~I~sl~~spdg~~L~sgs~d---G-------~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
.+.-.-+++++..+.|++--.. | .|-++|+.+++.+..+..+ .++.+|.. +.+.+ ++|+
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~V-sqd~~--------P~L~ 305 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAV-SQDDK--------PLLY 305 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEE-ESSSS---------EEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEE-ccCCC--------cEEE
Confidence 1233446788766555553221 1 3778899999999988753 36788998 66654 6787
Q ss_pred EEE-CCCeEEEEECCCCceeEEEecc
Q 000861 1056 VAA-GCNEVSLWNAENGSCHQVLRTA 1080 (1249)
Q Consensus 1056 t~s-~Dg~I~vWDl~tg~~~~~l~~~ 1080 (1249)
+.+ +++.+.+||..+|+.+..+...
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE---
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 665 5789999999999998888743
No 423
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.05 E-value=1.9 Score=50.18 Aligned_cols=181 Identities=12% Similarity=0.125 Sum_probs=103.6
Q ss_pred CcEEEEECCCCccccccceeeEeeccCCceEEEEEec---C----CCEEEEEeC----------CCeEEEEEccccccCC
Q 000861 857 STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLR---H----SAQVVVGAC----------DGIIHMFSVDHISRGL 919 (1249)
Q Consensus 857 gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fsp---d----g~~Lasgs~----------Dg~I~vwdv~~~~~~~ 919 (1249)
+.|++.|..+.+... ...+.. ...+++++... + ..++++|+. .|.|.++++.......
T Consensus 2 s~i~l~d~~~~~~~~----~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD----SFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTTSSEEE----EEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred cEEEEEeCCCCeEEE----EEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 357888888776321 222332 23455555443 2 467777753 2889999998210000
Q ss_pred CccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCc-cceeeecCCCCCceEEEEEcCCC
Q 000861 920 GNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS-NTWTLKAIPEEGYVSSLVTGPCG 998 (1249)
Q Consensus 920 g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~-~~~~l~~~~h~~~I~sl~~spdg 998 (1249)
.+ ...+...+ ..++|++++.| . + .++++. ++.|.+|++...+ ....-.. .....++++... +
T Consensus 77 ~~------l~~i~~~~-~~g~V~ai~~~--~---~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 77 FK------LKLIHSTE-VKGPVTAICSF--N---G-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVF--K 139 (321)
T ss_dssp -E------EEEEEEEE-ESS-EEEEEEE--T---T-EEEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--T
T ss_pred eE------EEEEEEEe-ecCcceEhhhh--C---C-EEEEee-cCEEEEEEccCcccchhhhee-cceEEEEEEecc--c
Confidence 01 12222222 46889999866 2 2 444443 5899999999887 3322222 223366666655 5
Q ss_pred CEEEEEecCCcEEEEeCCC-CCccccc-ccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECC
Q 000861 999 NWFVSGSSRGVLTLWDLRF-LVPVNSW-QYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 999 ~~L~sgs~dG~I~lWDlr~-~~~l~s~-~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+++++|+....+.++..+. ...+..+ .......+.++.+ .++++ .++++..+|.+.++...
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~-l~d~~---------~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEF-LVDED---------TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEE-E-SSS---------EEEEEETTSEEEEEEE-
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEE-ecCCc---------EEEEEcCCCeEEEEEEC
Confidence 6999999988888775432 2212221 2223446788888 65555 78999999999998775
No 424
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.035 Score=67.17 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEE
Q 000861 882 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYST 961 (1249)
Q Consensus 882 h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs 961 (1249)
+...|.--++...+++++.|+.-|.+++|+-. .|.. ......+..+ +++....+++ ..+++.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-----~~~~-------~~~~~~~~~~-~~~~~~vs~~---e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-----TGEM-------RKLKNEGATG-ITCVRSVSSV---EYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC-----chhh-------hcccccCccc-eEEEEEecch---hHhhhhhc
Confidence 33456666677788999999999999999876 2222 1111222233 3333337777 67889999
Q ss_pred CCCeEEEEEcCCCccceee----ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q 000861 962 QNCGIHLWDTRSNSNTWTL----KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF 1017 (1249)
Q Consensus 962 ~dg~I~iwDlrt~~~~~~l----~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~ 1017 (1249)
..|.|.++-+..+...... ....|...|++++|++++..+++|...|.|.+-.+..
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999999988764332111 1123678899999999999999999999998887765
No 425
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=1.8 Score=47.59 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCCCcEEEEeccccCceeEEEEcCCCC-EEEEEECCCc-EEEEECCCCccccccc--eeeEeeccCCceEEEEEecCCCE
Q 000861 822 RPRGILVAHLQEHCSAVNEIAISHDHS-FFVSASDDST-VKVWDSRKLEKDISFR--SRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 822 ~~~G~lv~~L~~H~~~V~~la~spdg~-~laTgs~Dgt-VkIWD~~~~~~~~~~~--~~~t~~~h~~~V~sl~fspdg~~ 897 (1249)
+..|+++..+. -...-..|+|+|... -++.+-.-|+ ..++|........+.. ....|-+|+ .|+|||.+
T Consensus 55 ~eaGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~ 127 (366)
T COG3490 55 SEAGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRL 127 (366)
T ss_pred ccCCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcE
Confidence 34555554433 122334577777543 4555555555 4678888766432211 112344454 58999999
Q ss_pred EEEEeCC-----CeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC----------
Q 000861 898 VVVGACD-----GIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ---------- 962 (1249)
Q Consensus 898 Lasgs~D-----g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~---------- 962 (1249)
|...-.| |.|-|||.+. +...+-.+..|.-....+. +.+| |+.++.+..
T Consensus 128 LYATEndfd~~rGViGvYd~r~------------~fqrvgE~~t~GiGpHev~-lm~D---GrtlvvanGGIethpdfgR 191 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDARE------------GFQRVGEFSTHGIGPHEVT-LMAD---GRTLVVANGGIETHPDFGR 191 (366)
T ss_pred EEeecCCCCCCCceEEEEeccc------------ccceecccccCCcCcceeE-EecC---CcEEEEeCCceecccccCc
Confidence 9876443 7899999881 2223445555655556666 7788 566665532
Q ss_pred --------CCeEEEEEcCCCccceeeecC--CCCCceEEEEEcCCCCEEEEEecCCc-----EEEEeCCCCCcccccccC
Q 000861 963 --------NCGIHLWDTRSNSNTWTLKAI--PEEGYVSSLVTGPCGNWFVSGSSRGV-----LTLWDLRFLVPVNSWQYS 1027 (1249)
Q Consensus 963 --------dg~I~iwDlrt~~~~~~l~~~--~h~~~I~sl~~spdg~~L~sgs~dG~-----I~lWDlr~~~~l~s~~~~ 1027 (1249)
.-++.+.|..+|..+.+...+ .+.-.|..++..+||...+-+-..|- --+=-.+.+++++-+..+
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p 271 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP 271 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC
Confidence 134566676777766555444 46677899999999876554433332 111111234444333222
Q ss_pred ------CCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-CCCeEEEEECCCCceeE
Q 000861 1028 ------QVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1028 ------~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl~tg~~~~ 1075 (1249)
....|-+++. +.+.. ++...+ ..+...+||..+|..+.
T Consensus 272 ee~~~~~anYigsiA~-n~~~g---------lV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 272 EEQTAAFANYIGSIAA-NRRDG---------LVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred HHHHHHHHhhhhheee-cccCC---------eEEEecCCCCeEEEEEcCCCcEEe
Confidence 1234666766 43333 444444 45678999999997644
No 426
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.22 Score=59.82 Aligned_cols=176 Identities=17% Similarity=0.122 Sum_probs=105.3
Q ss_pred CccC--CCCcEEEEeccccCceeEEEEcCCCCEEEEEE---CC-CcEEEEECCCCccccccceeeEeeccCCceEEEEEe
Q 000861 819 SGWR--PRGILVAHLQEHCSAVNEIAISHDHSFFVSAS---DD-STVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML 892 (1249)
Q Consensus 819 ~~W~--~~G~lv~~L~~H~~~V~~la~spdg~~laTgs---~D-gtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fs 892 (1249)
.+|- .+|.-...+.--...+..-+|+|+++.++..+ .. ..+.++|+.++... ....+.++. ..-.|+
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~----~i~~~~g~~---~~P~fs 246 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP----VILNFNGNN---GAPAFS 246 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc----eeeccCCcc---CCccCC
Confidence 4454 34666666766667788888999988655432 22 35889999988742 123344443 467899
Q ss_pred cCCCEEEE-EeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECC-C--eEEE
Q 000861 893 RHSAQVVV-GACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQN-C--GIHL 968 (1249)
Q Consensus 893 pdg~~Las-gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~d-g--~I~i 968 (1249)
|||+.|+. ...||...+|-++..++ . ...+....+.-..- .|+|+ |+.++..+.. | .|.+
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~---~---------~~~Lt~~~gi~~~P-s~spd---G~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGK---N---------LPRLTNGFGINTSP-SWSPD---GSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCC---c---------ceecccCCccccCc-cCCCC---CCEEEEEeCCCCCcceEE
Confidence 99987765 45678777766552111 1 11122222222233 39999 6677766543 3 4777
Q ss_pred EEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-Cc--EEEEeCCCCCc
Q 000861 969 WDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-GV--LTLWDLRFLVP 1020 (1249)
Q Consensus 969 wDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G~--I~lWDlr~~~~ 1020 (1249)
+|+..+.. ..+... .+.-..-.|+|||++++..+.. |. |.+.|+..+..
T Consensus 311 ~~~~g~~~-~riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 311 YDLEGSQV-TRLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred ECCCCCce-eEeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 77776654 233221 2222267899999998887753 44 66666655553
No 427
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.86 E-value=1 Score=54.32 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=69.1
Q ss_pred cEEEEEEecCCCCCccEEEEE---ECC-CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEE-ecCCc--EEE
Q 000861 940 AIVTLVNYNTDNCASHMFMYS---TQN-CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSG-SSRGV--LTL 1012 (1249)
Q Consensus 940 ~V~~l~~fs~d~~~g~~L~sg---s~d-g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sg-s~dG~--I~l 1012 (1249)
.+..-. |+++ +..+++. ... ..+.++|+.+++........+ .-..-.|+|||+.++.. ..||. |.+
T Consensus 194 ~~~~p~-ws~~---~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 194 LILTPA-WSPD---GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ceeccc-cCcC---CCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 344444 8888 4444443 223 469999999998776665433 33445899999777654 45665 666
Q ss_pred EeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCe--EEEEECCCCce
Q 000861 1013 WDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNE--VSLWNAENGSC 1073 (1249)
Q Consensus 1013 WDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~--I~vWDl~tg~~ 1073 (1249)
.|+..+...+ +... .+.-..-.| +|+|+ ..+++.+..|. |.+.|.+.+..
T Consensus 267 ~dl~~~~~~~-Lt~~-~gi~~~Ps~-spdG~--------~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 267 MDLDGKNLPR-LTNG-FGINTSPSW-SPDGS--------KIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred EcCCCCccee-cccC-CccccCccC-CCCCC--------EEEEEeCCCCCcceEEECCCCCce
Confidence 7887666333 3321 111224456 89998 33444444554 66667765554
No 428
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.22 Score=60.73 Aligned_cols=262 Identities=21% Similarity=0.244 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchh---hhccCCCC
Q 000861 213 RAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYIL---PMLSMLPD 289 (1249)
Q Consensus 213 ~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyil---P~l~~l~~ 289 (1249)
+.+=--|.-|+.+++.+.- ..+-+=++.||.-.-|-||.-|+.-+-++.. -+||-|= |.|..-..
T Consensus 124 ye~giAL~GLS~fvTpdLA-RDLa~Dv~tLL~sskpYvRKkAIl~lykvFL-----------kYPeAlr~~FprL~EkLe 191 (877)
T KOG1059|consen 124 YEVGLALSGLSCIVTPDLA-RDLADDVFTLLNSSKPYVRKKAILLLYKVFL-----------KYPEALRPCFPRLVEKLE 191 (877)
T ss_pred chhhheecccccccCchhh-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-----------hhhHhHhhhHHHHHHhcc
Confidence 3333335566777766644 4566777999999999999999988877664 3455554 45556678
Q ss_pred CCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhc----cchhHHH-HHHHHHHH
Q 000861 290 DPEESVRICYASNIAKLALTAY-GFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQR----LNADVQL-SQLRKSIA 363 (1249)
Q Consensus 290 D~~~~VR~~~A~~l~~LA~~a~-rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~l~ 363 (1249)
||++.|-.+..+.|..||.-.- -|+.++--+.. .+..+ +.+ .-... |..-..+ -.|.+.+.
T Consensus 192 DpDp~V~SAAV~VICELArKnPknyL~LAP~ffk--llttS-------sNN----WmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 192 DPDPSVVSAAVSVICELARKNPQNYLQLAPLFYK--LLVTS-------SNN----WVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred CCCchHHHHHHHHHHHHHhhCCcccccccHHHHH--HHhcc-------CCC----eehHHHHHHHhhccccCchhhhhhh
Confidence 9999999999999999986521 12222211110 00000 000 00000 0000000 12345555
Q ss_pred HHHHHHhcCCCCCHHHHHHHH-Hhchhhhhh---cCc---cccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChh
Q 000861 364 EVVQELVMGPKQTPSIRRALL-QDIGNLCSF---FGQ---RQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGER 436 (1249)
Q Consensus 364 ~~~~~Ll~~~D~~~~Vr~all-~~i~~l~~f---~G~---~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~ 436 (1249)
+.+.+|. ++.|-..|| +-|..+... -|- ..+.+-=+.-|-.|+.|.|+.||--=.-++..|+.-=. .
T Consensus 259 eplt~li-----~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp-~ 332 (877)
T KOG1059|consen 259 EPITELM-----ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP-K 332 (877)
T ss_pred hHHHHHH-----HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH-H
Confidence 5556555 234444444 222221111 121 12233335667789999999998755555555554322 2
Q ss_pred hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHhhc
Q 000861 437 SVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYP-SQWVRRSVVTFIAASSES 511 (1249)
Q Consensus 437 ~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hp-n~wiR~~~~~~i~~~a~~ 511 (1249)
++ +--.-+++++|.|.++.||.+||.-|-.|+. +..+.+++.+.+..+... -.-+|-..+.-|..++..
T Consensus 333 ~V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs-----kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 333 AV-QAHKDLILRCLDDKDESIRLRALDLLYGMVS-----KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HH-HHhHHHHHHHhccCCchhHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 22 4456788999999999999999998887655 666667777666544433 235677777666666543
No 429
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.84 E-value=5.3 Score=46.78 Aligned_cols=223 Identities=11% Similarity=0.118 Sum_probs=95.1
Q ss_pred CccC--CCCcEEEEeccccCceeEE-----EEcCCCCEEEE-EECCCcE--EEEECCCCccccccceeeEeeccCCceEE
Q 000861 819 SGWR--PRGILVAHLQEHCSAVNEI-----AISHDHSFFVS-ASDDSTV--KVWDSRKLEKDISFRSRLTYHLEGSRALC 888 (1249)
Q Consensus 819 ~~W~--~~G~lv~~L~~H~~~V~~l-----a~spdg~~laT-gs~DgtV--kIWD~~~~~~~~~~~~~~t~~~h~~~V~s 888 (1249)
+-|. .+|..|..|..+.+.-..+ +|.+||+.|+- +..||.- .+-|+.+++. ..+|...+ .....
T Consensus 12 ~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~QLTdg~g-~~~~g 85 (386)
T PF14583_consen 12 KTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----TQLTDGPG-DNTFG 85 (386)
T ss_dssp EEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----EE---SS--B-TTT
T ss_pred eEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-----EECccCCC-CCccc
Confidence 3455 4788888888655544333 55678865554 4456654 4457777762 12222111 22334
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEe--cCCCCCccEEEEEE-----
Q 000861 889 TMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNY--NTDNCASHMFMYST----- 961 (1249)
Q Consensus 889 l~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~f--s~d~~~g~~L~sgs----- 961 (1249)
..++++++.++-...+..|+-.|++. .+ .-..+...++.+-... | +.+ +..++..-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T-----~e--------~~~vy~~p~~~~g~gt-~v~n~d---~t~~~g~e~~~~d 148 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDT-----LE--------ERVVYEVPDDWKGYGT-WVANSD---CTKLVGIEISRED 148 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT---------------EEEEEE--TTEEEEEE-EEE-TT---SSEEEEEEEEGGG
T ss_pred eEEecCCCeEEEEECCCeEEEEECCc-----Cc--------EEEEEECCcccccccc-eeeCCC---ccEEEEEEEeehh
Confidence 66678888876655556676667661 11 1122222333332222 3 222 33333221
Q ss_pred -----------------CCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC----c-EEEEeCCC-C
Q 000861 962 -----------------QNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG----V-LTLWDLRF-L 1018 (1249)
Q Consensus 962 -----------------~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG----~-I~lWDlr~-~ 1018 (1249)
-.+.|.-.|+.+|+....+. ....+.-+.|+|....+++=+..| . -++|=+++ +
T Consensus 149 ~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 149 WKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp -----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred ccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 12567778888887654444 356778889999665555444333 2 36776543 2
Q ss_pred CcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEE-C---CCeEEEEECCCCceeE
Q 000861 1019 VPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAA-G---CNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1019 ~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s-~---Dg~I~vWDl~tg~~~~ 1075 (1249)
...+.+.......+..=.|+.|+|. .+.+.+. . +..|.-+|..+++...
T Consensus 226 ~~~~~v~~~~~~e~~gHEfw~~DG~--------~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 226 SNVKKVHRRMEGESVGHEFWVPDGS--------TIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp ---EESS---TTEEEEEEEE-TTSS---------EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CcceeeecCCCCcccccccccCCCC--------EEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 2222222112223333344488887 2333332 1 2246666777766543
No 430
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.05 Score=65.58 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh----cCccccchhhhhhH-hhhhcCCCHHHHHHHHhhhhh
Q 000861 354 QLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF----FGQRQSNDFLLPIL-PAFLNDRDEQLRAVFYGQIVY 428 (1249)
Q Consensus 354 ~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f----~G~~~~~d~lLp~l-~t~lnD~~w~lR~a~~~~i~~ 428 (1249)
+.+.+.+.=...+..|| .|+-|+||...+..+.+.-.. +.+....+ +|-.+ =+++-|..-.||++.|+.++.
T Consensus 213 ~mD~i~~kQf~~l~~LL--~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~-ll~kI~d~~a~dt~s~VR~svf~gl~~ 289 (1005)
T KOG1949|consen 213 EMDSIIQKQFEELYSLL--EDPYPMVRSTAILGVCKITSKFWEMIPPTILID-LLKKITDELAFDTSSDVRCSVFKGLPM 289 (1005)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHhhhccchheehhHhcCcHH
Confidence 44444444444566788 478999999998776554433 33333333 44444 377888888999999999999
Q ss_pred hhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCC
Q 000861 429 VCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGY 473 (1249)
Q Consensus 429 la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl 473 (1249)
++..=-....-+++||-+--.|.|..|.||+++..-|-.+-....
T Consensus 290 ~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra 334 (1005)
T KOG1949|consen 290 ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA 334 (1005)
T ss_pred HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhh
Confidence 997666666668999999999999999999999998887766443
No 431
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.11 Score=63.88 Aligned_cols=276 Identities=19% Similarity=0.197 Sum_probs=177.6
Q ss_pred chhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCC
Q 000861 192 IVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPS 271 (1249)
Q Consensus 192 ~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~ 271 (1249)
...+..++=+|+|| |.--+-+.|+..+..|....+.+.. .-+-.+.-+|+-+.+-.|-+|+++|-++........ .
T Consensus 243 ~s~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-~ 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-T 318 (865)
T ss_pred hhhHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-c
Confidence 44688889999999 9999999999999988887776642 356666777888899999999999998886543211 1
Q ss_pred CCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccch
Q 000861 272 DAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNA 351 (1249)
Q Consensus 272 ~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1249)
..| +-|..|++|.+-. |+.+|-+.. +++ ..
T Consensus 319 ~cN-------~elE~lItd~Nrs--------Iat~AITtL--------LKT---------------------------G~ 348 (865)
T KOG1078|consen 319 VCN-------LDLESLITDSNRS--------IATLAITTL--------LKT---------------------------GT 348 (865)
T ss_pred ccc-------hhHHhhhcccccc--------hhHHHHHHH--------HHh---------------------------cc
Confidence 111 3466777887733 334443322 111 00
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcC-CCHHHHHHHHhhhhhhh
Q 000861 352 DVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLND-RDEQLRAVFYGQIVYVC 430 (1249)
Q Consensus 352 ~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD-~~w~lR~a~~~~i~~la 430 (1249)
++..+.|.+.|...+-++- | +-|.-.+..|..||.-|.+.++. ++++|...|-+ --..-..++++.|..++
T Consensus 349 e~sv~rLm~qI~~fv~dis---D---eFKivvvdai~sLc~~fp~k~~~--~m~FL~~~Lr~eGg~e~K~aivd~Ii~ii 420 (865)
T KOG1078|consen 349 ESSVDRLMKQISSFVSDIS---D---EFKIVVVDAIRSLCLKFPRKHTV--MMNFLSNMLREEGGFEFKRAIVDAIIDII 420 (865)
T ss_pred hhHHHHHHHHHHHHHHhcc---c---cceEEeHHHHHHHHhhccHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 2344555555555555432 4 56677777888899999887654 78888877765 46788899999999998
Q ss_pred cccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhh
Q 000861 431 FFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSE 510 (1249)
Q Consensus 431 ~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~ 510 (1249)
...-..- +-.|--+.....|.|...+ +.+.|.-|-+.|...+. --..+..+.....=-|.-||-+++..++.++
T Consensus 421 e~~pdsK--e~~L~~LCefIEDce~~~i--~~rILhlLG~EgP~a~~-Pskyir~iyNRviLEn~ivRaaAv~alaKfg- 494 (865)
T KOG1078|consen 421 EENPDSK--ERGLEHLCEFIEDCEFTQI--AVRILHLLGKEGPKAPN-PSKYIRFIYNRVILENAIVRAAAVSALAKFG- 494 (865)
T ss_pred HhCcchh--hHHHHHHHHHHHhccchHH--HHHHHHHHhccCCCCCC-cchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-
Confidence 7655332 3334444445556665443 44555555555544322 0012223333333448889999999999999
Q ss_pred cCCccceeeEeeeccchhhhcCCCCc
Q 000861 511 SLGAVDSYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 511 ~l~~~d~~~~l~P~l~~~l~~~v~~i 536 (1249)
++....+..+.-+++.++.|..-.+
T Consensus 495 -~~~~~l~~sI~vllkRc~~D~Ddev 519 (865)
T KOG1078|consen 495 -AQDVVLLPSILVLLKRCLNDSDDEV 519 (865)
T ss_pred -cCCCCccccHHHHHHHHhcCchHHH
Confidence 6666666666666677776665555
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.80 E-value=0.78 Score=55.49 Aligned_cols=145 Identities=8% Similarity=0.096 Sum_probs=80.9
Q ss_pred eccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEE
Q 000861 831 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMF 910 (1249)
Q Consensus 831 L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vw 910 (1249)
+....-....+.++|+|++++. +.||.-.|+...... . ... +.-...+|.+.+ .+|+-..+++|.++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r------~--k~~---G~g~~~vw~~~n-~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------N--KAF---GSGLSFVWSSRN-RYAVLESSSTIKIY 94 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE------E--EEE---EE-SEEEE-TSS-EEEEE-TTS-EEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc------c--ccc---CceeEEEEecCc-cEEEEECCCeEEEE
Confidence 3334445789999999998888 556888888743322 1 112 234578898844 57777778889996
Q ss_pred E-ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCce
Q 000861 911 S-VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYV 989 (1249)
Q Consensus 911 d-v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I 989 (1249)
. .+ . . ..+.+.. ...+..+. . |..|...+ ++.|.+||+.+++.+..+.. ..|
T Consensus 95 kn~~--~----~--------~~k~i~~-~~~~~~If--~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v----~~v 147 (443)
T PF04053_consen 95 KNFK--N----E--------VVKSIKL-PFSVEKIF--G-----GNLLGVKS-SDFICFYDWETGKLIRRIDV----SAV 147 (443)
T ss_dssp ETTE--E-------------TT------SS-EEEEE--------SSSEEEEE-TTEEEEE-TTT--EEEEESS-----E-
T ss_pred EcCc--c----c--------cceEEcC-CcccceEE--c-----CcEEEEEC-CCCEEEEEhhHcceeeEEec----CCC
Confidence 3 33 1 0 0111221 12344453 2 23555554 45899999999999988854 248
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEeCC
Q 000861 990 SSLVTGPCGNWFVSGSSRGVLTLWDLR 1016 (1249)
Q Consensus 990 ~sl~~spdg~~L~sgs~dG~I~lWDlr 1016 (1249)
..+.|+++|.+++..+.+ .+.+++..
T Consensus 148 k~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred cEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 999999999999998866 66777653
No 433
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.62 E-value=0.84 Score=54.35 Aligned_cols=354 Identities=16% Similarity=0.120 Sum_probs=190.3
Q ss_pred hhhhcCCcccccccccccchhhhc-cccCCCCCCCCCCCCCCCCCCcccch---h--hHHHHHhhhcc------CCCchh
Q 000861 144 AFRKNGHPFLKKITMNNLSSLMSE-YDSQSDTFGMPFLPLPEDSMKCEGIV---L--IASLLCSCVRN------VKLPHY 211 (1249)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~l~~i~s~~r~------~~~~~~ 211 (1249)
++.++..|-|++-+||=-.-+-++ .|.. +-..+.|+.+..+.|.. + +++.+++.+.+ =.-|..
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~-----~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGE-----MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhH-----HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 347788888999888876444332 2111 11111122222222211 2 55555555543 136888
Q ss_pred HHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCC
Q 000861 212 RRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDP 291 (1249)
Q Consensus 212 r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~ 291 (1249)
-.+|...|.-+++.++|... .-++.|+-+-++.+...=|-+|+-++..++.-=... --+-+....||.+..+..|+
T Consensus 345 smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~---~lT~~V~qalp~i~n~m~D~ 420 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED---CLTKIVPQALPGIENEMSDS 420 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH---HHHhhHHhhhHHHHHhcccc
Confidence 88888888889999988765 458889999999999999999999988777521100 00122334788899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhh------hcccccccCCCCCCC-------CCCCcchhhhhccchhHHHHHH
Q 000861 292 EESVRICYASNIAKLALTAYGFLVHSIRLS------EAGVLDKLSAPHKSP-------SSSNETSVQLQRLNADVQLSQL 358 (1249)
Q Consensus 292 ~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 358 (1249)
.-.|+-+-|.|++.||...---..-++.+. -.|.+|......+-. ..-.+......++ +...
T Consensus 421 ~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~-----l~~f 495 (858)
T COG5215 421 CLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESF-----LAKF 495 (858)
T ss_pred eeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccch-----hHHH
Confidence 999999999999999876432221111110 011111100000000 0000000000000 0011
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCC---------------CH----HHH
Q 000861 359 RKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDR---------------DE----QLR 419 (1249)
Q Consensus 359 ~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~---------------~w----~lR 419 (1249)
-..|+..+..-....+++...|.++.+.|+.|..|-. +-..+ ++--+.+|.-|| |. .|-
T Consensus 496 Y~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~-d~V~~-~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elq 573 (858)
T COG5215 496 YLAILNALVKGTELALNESNLRVSLFSALGTLILICP-DAVSD-ILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQ 573 (858)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc-hhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 1111111111001137889999999998888876532 22222 112222332221 22 233
Q ss_pred HHHHhhhhhhhcccCh--hhHHHhHHHHHHHHccCCcHHH----HHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCC
Q 000861 420 AVFYGQIVYVCFFVGE--RSVEEYLLPYIEQALSDATEAV----IVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYP 493 (1249)
Q Consensus 420 ~a~~~~i~~la~~lG~--~~~~~~llPll~q~L~D~~e~V----~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hp 493 (1249)
.-++..+-.|..--|+ +.++..|+.|+++.|.-....+ +.-++.+|..=.+.|.- ...-.++|....-+...
T Consensus 574 SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe--~y~~~fiPyl~~aln~~ 651 (858)
T COG5215 574 SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFE--QYASKFIPYLTRALNCT 651 (858)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHhcch
Confidence 3333344444445565 7788899999999998773333 33344444443332221 11123344333334455
Q ss_pred CHHHHHHHHHHHHHHhhcCCcc
Q 000861 494 SQWVRRSVVTFIAASSESLGAV 515 (1249)
Q Consensus 494 n~wiR~~~~~~i~~~a~~l~~~ 515 (1249)
.+-+--.++.+|..+|..|+..
T Consensus 652 d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhh
Confidence 7788899999999999999865
No 434
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.58 E-value=1.5 Score=51.10 Aligned_cols=206 Identities=11% Similarity=0.121 Sum_probs=110.3
Q ss_pred ceeEEEEcCC----CCEEEEEEC----------CCcEEEEECCCC-ccccccceeeEeeccCCceEEEEEecCCCEEEEE
Q 000861 837 AVNEIAISHD----HSFFVSASD----------DSTVKVWDSRKL-EKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVG 901 (1249)
Q Consensus 837 ~V~~la~spd----g~~laTgs~----------DgtVkIWD~~~~-~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasg 901 (1249)
.+..+.+..+ ..+|+.|.. .|.|.++++... .....++..... ...++|++++-. ++ +|++|
T Consensus 28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~ 104 (321)
T PF03178_consen 28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVA 104 (321)
T ss_dssp EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEE
T ss_pred EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEe
Confidence 3444444443 467887753 288999999884 211222222222 245779999877 44 45544
Q ss_pred eCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC-Cccceee
Q 000861 902 ACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS-NSNTWTL 980 (1249)
Q Consensus 902 s~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt-~~~~~~l 980 (1249)
. ++.|.+|++. ..+ .+ .....++. ...++++. ... ++++.|+....+.++..+. +.....+
T Consensus 105 ~-g~~l~v~~l~-~~~---~l------~~~~~~~~-~~~i~sl~-~~~-----~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 105 V-GNKLYVYDLD-NSK---TL------LKKAFYDS-PFYITSLS-VFK-----NYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp E-TTEEEEEEEE-TTS---SE------EEEEEE-B-SSSEEEEE-EET-----TEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred e-cCEEEEEEcc-Ccc---cc------hhhheecc-eEEEEEEe-ccc-----cEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 4 4789999998 111 11 11222222 23677776 333 3999999988888875543 2223233
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCC-------CC-cccc-cccCCCCCeeEE---EEEcCC-CCCccc
Q 000861 981 KAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRF-------LV-PVNS-WQYSQVCPIEKM---CLFVPP-PNAAVS 1047 (1249)
Q Consensus 981 ~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~-------~~-~l~s-~~~~~~~~I~~l---~~~sp~-g~~~~~ 1047 (1249)
........++++.+-++++.++++..+|.+.++.... +. .+.. -....+..|+++ .+ .|. +. ..
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l-~~~~~~--~~ 243 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL-IPRSGS--SE 243 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S-S--SSS--S-
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe-eecCCC--Cc
Confidence 2233455688888886667999999999999998752 11 1111 111234467777 33 342 11 00
Q ss_pred CCCCCEEEEEECCCeEEEE
Q 000861 1048 TTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 1048 ~~~~~~l~t~s~Dg~I~vW 1066 (1249)
....+.++.++.+|.|.+.
T Consensus 244 ~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 244 SPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTEEEEEEEEETTS-EEEE
T ss_pred ccccceEEEEecCCEEEEE
Confidence 0012458888889887743
No 435
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.47 E-value=0.23 Score=58.81 Aligned_cols=314 Identities=15% Similarity=0.175 Sum_probs=176.9
Q ss_pred ccchhhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCCh-HHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhcccccc
Q 000861 190 EGIVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDD-EDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 268 (1249)
Q Consensus 190 ~~~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~d-e~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~ 268 (1249)
......+.++-+...+. +....++...++....+.+.. ...++.+.|++-.-++|.-.+|...|++.++.+...= +
T Consensus 220 ~dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v 296 (898)
T COG5240 220 TDKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--V 296 (898)
T ss_pred ccHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--c
Confidence 33455566666666663 555666666666666666653 3566778888888888888888888888888765321 1
Q ss_pred CCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcccccccCCCCCCCCCCCc
Q 000861 269 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAY-------GFLVHSIRLSEAGVLDKLSAPHKSPSSSNE 341 (1249)
Q Consensus 269 ~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~-------rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1249)
..-|.+.....|+.+...+....|.+.-..|..||.+.- +-.|- | .+ +.+++-+. .
T Consensus 297 ----~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs---L-----Is---d~Nr~Ist--y 359 (898)
T COG5240 297 ----GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES---L-----IS---DENRTIST--Y 359 (898)
T ss_pred ----CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH---H-----hh---cccccchH--H
Confidence 123444455666677777777777777777777775521 11110 0 00 00000000 0
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhh-cCCCHHHHH
Q 000861 342 TSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFL-NDRDEQLRA 420 (1249)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~l-nD~~w~lR~ 420 (1249)
.-.....-..++..+.|...|-..+.++ .-.-|+.++..+..||..|.+.+. .+|-+|..-| +.--...+.
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~------SD~FKiI~ida~rsLsl~Fp~k~~--s~l~FL~~~L~~eGg~eFK~ 431 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDM------SDGFKIIAIDALRSLSLLFPSKKL--SYLDFLGSSLLQEGGLEFKK 431 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhh------ccCceEEeHHHHHHHHhhCcHHHH--HHHHHHHHHHHhcccchHHH
Confidence 0000000111334444444444433332 335667777778888988887653 4667776444 445778888
Q ss_pred HHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHH
Q 000861 421 VFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRS 500 (1249)
Q Consensus 421 a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~ 500 (1249)
+..++|..+-.++... .|-.|.-+-..+.|.|+-=+ +++.|.-|=+.|--.+. ---.+..+..-+.-.|..||.|
T Consensus 432 ~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~~I--~vrIL~iLG~EgP~a~~-P~~yvrhIyNR~iLEN~ivRsa 506 (898)
T COG5240 432 YMVDAISDAMENDPDS--KERALEVLCTFIEDCEYHQI--TVRILGILGREGPRAKT-PGKYVRHIYNRLILENNIVRSA 506 (898)
T ss_pred HHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchhHH--HHHHHHHhcccCCCCCC-cchHHHHHHHHHHHhhhHHHHH
Confidence 8888888888777533 23444444456667665322 22233333333222111 0012222222234458899999
Q ss_pred HHHHHHHHhhcCCccceeeEeeeccchhhhcCCCCc
Q 000861 501 VVTFIAASSESLGAVDSYVFLAPVIRPFLRRQPASL 536 (1249)
Q Consensus 501 ~~~~i~~~a~~l~~~d~~~~l~P~l~~~l~~~v~~i 536 (1249)
|+..++.+|-+.+...++..+.-+++..|.|.=-.+
T Consensus 507 Av~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeV 542 (898)
T COG5240 507 AVQALSKFALNISDVVSPQSVENALKRCLNDQDDEV 542 (898)
T ss_pred HHHHHHHhccCccccccHHHHHHHHHHHhhcccHHH
Confidence 999999999877776666666667777766643333
No 436
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.44 E-value=0.033 Score=40.45 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=32.1
Q ss_pred eeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 876 ~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
...+..|...|.++.|.+++..+++++.||.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999996
No 437
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=3.3 Score=49.44 Aligned_cols=206 Identities=13% Similarity=0.110 Sum_probs=130.4
Q ss_pred eeEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeC---CCeEEEEEcc
Q 000861 838 VNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC---DGIIHMFSVD 913 (1249)
Q Consensus 838 V~~la~spdg~-~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~---Dg~I~vwdv~ 913 (1249)
-..+++++++. .+++...++.|.+.|..+... ..... -+.....+++.++++.+.++.. ++++.+.|-.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccce------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 34667788776 556666678999999665442 11111 1225678999999987777655 5666666655
Q ss_pred ccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEE-ECCCeEEEEEcCCCccce-eee-cCCCCCceE
Q 000861 914 HISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYS-TQNCGIHLWDTRSNSNTW-TLK-AIPEEGYVS 990 (1249)
Q Consensus 914 ~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sg-s~dg~I~iwDlrt~~~~~-~l~-~~~h~~~I~ 990 (1249)
.+.+ +........+ ..++ +.|+ |..++.+ ..++.|.+.|..+..... .-. .........
T Consensus 149 -----t~~~--------~~~~~vG~~P-~~~a-~~p~---g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 149 -----TNKV--------TATIPVGNTP-TGVA-VDPD---GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred -----CCeE--------EEEEecCCCc-ceEE-ECCC---CCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 1221 2222222223 6676 8999 5544444 478999999977665442 100 112234567
Q ss_pred EEEEcCCCCEEEEEecC---CcEEEEeCCCCCcccc-cccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC-CCeEEE
Q 000861 991 SLVTGPCGNWFVSGSSR---GVLTLWDLRFLVPVNS-WQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG-CNEVSL 1065 (1249)
Q Consensus 991 sl~~spdg~~L~sgs~d---G~I~lWDlr~~~~l~s-~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~-Dg~I~v 1065 (1249)
.+.++++|..+.+.... +.+...|..++..... ...+.. ....+.. +|+|. .+++... .+.+.+
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~-~p~g~---------~~yv~~~~~~~V~v 279 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAV-DPAGK---------AAYVANSQGGTVSV 279 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeE-CCCCC---------EEEEEecCCCeEEE
Confidence 78999999866665443 5899999988776654 222222 3455677 89998 7777744 478999
Q ss_pred EECCCCceeEEEec
Q 000861 1066 WNAENGSCHQVLRT 1079 (1249)
Q Consensus 1066 WDl~tg~~~~~l~~ 1079 (1249)
.|..+......+..
T Consensus 280 id~~~~~v~~~~~~ 293 (381)
T COG3391 280 IDGATDRVVKTGPT 293 (381)
T ss_pred EeCCCCceeeeecc
Confidence 99888776665553
No 438
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.058 Score=68.11 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEE
Q 000861 997 CGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQV 1076 (1249)
Q Consensus 997 dg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~ 1076 (1249)
.+.+++.|++.|.+-..|++.......+.....++|++++| +.+|. .++.|-.+|.|.+||+.+++..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvaf-n~dg~---------~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAF-NQDGS---------LLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEe-cCCCc---------eeccccCCCcEEEEEccCCcceee
Confidence 45689999999999999997654323334445679999999 88887 888888999999999999988887
Q ss_pred Eeccc
Q 000861 1077 LRTAN 1081 (1249)
Q Consensus 1077 l~~~~ 1081 (1249)
+..+.
T Consensus 168 i~e~~ 172 (1206)
T KOG2079|consen 168 ITEHG 172 (1206)
T ss_pred eeecC
Confidence 76443
No 439
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.41 E-value=8.1 Score=46.60 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=100.0
Q ss_pred ceeEEEEcCCCCEEEEE-ECCC----cEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCC------
Q 000861 837 AVNEIAISHDHSFFVSA-SDDS----TVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDG------ 905 (1249)
Q Consensus 837 ~V~~la~spdg~~laTg-s~Dg----tVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg------ 905 (1249)
.+....+||||+++|-+ +..| +++++|+.+++.. ...+.. .....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-----~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-----PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-----EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-----CCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 34567899999988754 3334 4999999998631 111221 1223499999988877665433
Q ss_pred -----eEEEEEccccccCCCccccccCccceeeecCCCCc--EEEEEEecCCCCCccEEEEE-ECC---CeEEEEEcCCC
Q 000861 906 -----IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGA--IVTLVNYNTDNCASHMFMYS-TQN---CGIHLWDTRSN 974 (1249)
Q Consensus 906 -----~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~--V~~l~~fs~d~~~g~~L~sg-s~d---g~I~iwDlrt~ 974 (1249)
.|+.|++. +. . ......+...... ...+. .+++ +++++.. ... ..+.+.|+..+
T Consensus 198 ~~~~~~v~~~~~g-t~----~------~~d~lvfe~~~~~~~~~~~~-~s~d---~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 198 SGYPRQVYRHKLG-TP----Q------SEDELVFEEPDEPFWFVSVS-RSKD---GRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CGCCEEEEEEETT-S-----G------GG-EEEEC-TTCTTSEEEEE-E-TT---SSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCCcEEEEEECC-CC----h------HhCeeEEeecCCCcEEEEEE-ecCc---ccEEEEEEEccccCCeEEEEecccc
Confidence 25666665 11 0 0112233333333 45565 7887 5665543 332 45888888875
Q ss_pred ---ccceeeecCCCCCceEEEEEcCCCCEEEEEec---CCcEEEEeCCCCCcc--cccccCCCC--CeeEEEEEcCCCCC
Q 000861 975 ---SNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS---RGVLTLWDLRFLVPV--NSWQYSQVC--PIEKMCLFVPPPNA 1044 (1249)
Q Consensus 975 ---~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~---dG~I~lWDlr~~~~l--~s~~~~~~~--~I~~l~~~sp~g~~ 1044 (1249)
...+..-.....+....+... ++.+++.... ++.|.-.++...... ...-.++.. .+..+.. .+.
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~- 337 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL---FKD- 337 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE---ETT-
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE---ECC-
Confidence 222222112223333333333 4434443322 356777777665531 111112332 3444444 232
Q ss_pred cccCCCCCEEEEEECCC--eEEEEECCCCc
Q 000861 1045 AVSTTARPLIYVAAGCN--EVSLWNAENGS 1072 (1249)
Q Consensus 1045 ~~~~~~~~~l~t~s~Dg--~I~vWDl~tg~ 1072 (1249)
.+++..-.++ .|++||+..+.
T Consensus 338 -------~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 338 -------YLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp -------EEEEEEEETTEEEEEEEETT-TE
T ss_pred -------EEEEEEEECCccEEEEEECCCCc
Confidence 1344444444 58888887333
No 440
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.59 Score=60.40 Aligned_cols=264 Identities=16% Similarity=0.099 Sum_probs=168.7
Q ss_pred chhHHHHHHHHHHHhhcCChHH--HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccC
Q 000861 209 PHYRRAAILLLKSSSLFIDDED--RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSM 286 (1249)
Q Consensus 209 ~~~r~~a~~ll~~l~~~~~de~--~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~ 286 (1249)
..-.+..++++..++++.+.+. .+..+.|+ ..+-..+-||.-|-+-|..++..-.-..+ ..-+.++|.-.|..
T Consensus 630 ~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~---~e~~~~~~vQkK~yrlL~~l~~~~s~~~~--~~q~i~~I~n~L~d 704 (1176)
T KOG1248|consen 630 SFKTLSLLDLLIALAPVQTESQVSKLFTVDPE---FENSSSTKVQKKAYRLLEELSSSPSGEGL--VEQRIDDIFNSLLD 704 (1176)
T ss_pred hHHHHHHHHHHHhhhccccchhHHHHHHhhHH---hhccccHHHHHHHHHHHHHHhcCCchhhH--HHHHHHHHHHHHHH
Confidence 3346777888999999887764 33333333 33445889999999888888876111101 11345667777777
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHH
Q 000861 287 LPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVV 366 (1249)
Q Consensus 287 l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (1249)
-+++.+..+|...=.|+-.|-+... .+ ..+..-+.|-+++
T Consensus 705 s~qs~~~~~~~~rl~~L~~L~~~~~--~e--------------------------------------~~~~i~k~I~EvI 744 (1176)
T KOG1248|consen 705 SFQSSSSPAQASRLKCLKRLLKLLS--AE--------------------------------------HCDLIPKLIPEVI 744 (1176)
T ss_pred HHhccchHHHHHHHHHHHHHHHhcc--HH--------------------------------------HHHHHHHHHHHHH
Confidence 7777777888777777766655443 11 1111223344444
Q ss_pred HHHhcCCCCCHHHHHHHHH---hch--hhhhhcCccc---cchhhhhhHhhhhcCCCHHHHHH-HHhh---hhhhhcccC
Q 000861 367 QELVMGPKQTPSIRRALLQ---DIG--NLCSFFGQRQ---SNDFLLPILPAFLNDRDEQLRAV-FYGQ---IVYVCFFVG 434 (1249)
Q Consensus 367 ~~Ll~~~D~~~~Vr~all~---~i~--~l~~f~G~~~---~~d~lLp~l~t~lnD~~w~lR~a-~~~~---i~~la~~lG 434 (1249)
+.+ ++.+..-|+...+ .|. ..-.-+|.++ .....|+.|..-+--...+++++ ++.. ...-..+++
T Consensus 745 L~~---Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 745 LSL---KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred Hhc---ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 433 4666666665554 444 3334568666 33335566665544445566655 2222 222224455
Q ss_pred hhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcC
Q 000861 435 ERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS--GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 435 ~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l 512 (1249)
.+.+ +.++-.+.-+|.-.-..|+.+|+..++.++.. -..-....-+|++.++.++.+-+.-+|..+-.++..+.+.+
T Consensus 822 ~~~l-~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 822 DETL-EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 5554 67788888899999999999999999999985 22223344468888888887779999999999999999999
Q ss_pred CccceeeEe
Q 000861 513 GAVDSYVFL 521 (1249)
Q Consensus 513 ~~~d~~~~l 521 (1249)
|.+++..++
T Consensus 901 g~~eLe~~~ 909 (1176)
T KOG1248|consen 901 GAEELESFL 909 (1176)
T ss_pred CHHHHHhhC
Confidence 988765443
No 441
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.063 Score=66.10 Aligned_cols=200 Identities=22% Similarity=0.213 Sum_probs=123.3
Q ss_pred hhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 000861 234 RVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGF 313 (1249)
Q Consensus 234 ~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf 313 (1249)
..++.++.=++|+.|++|+.|++++.-+ .| .-+.+|+.-.+....+|...+||.+.|-|++.|-..-.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l--~v--------~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-- 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL--RV--------DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-- 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE--ee--------hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--
Confidence 5677888888899999999999976521 12 25679999999999999999999999999877633211
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhh
Q 000861 314 LVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSF 393 (1249)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f 393 (1249)
++ .+. .-+.+.+.+|+ .|++|.|-.+.+..+..+..-
T Consensus 154 -~~--------------------------------~~~--------~gl~~~L~~ll--~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 154 -DL--------------------------------VED--------SGLVDALKDLL--SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred -hh--------------------------------ccc--------cchhHHHHHHh--cCCCchHHHHHHHHHHHHHHh
Confidence 00 000 34566677788 488999999988877665532
Q ss_pred cCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCC
Q 000861 394 FGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGY 473 (1249)
Q Consensus 394 ~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl 473 (1249)
= .+ .+.-.+...++--++..|..-+|.=+..++++|..-.-...
T Consensus 191 ~-----~~-------------------------------~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 191 H-----PS-------------------------------VNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred C-----CC-------------------------------CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 1 11 11111112233334444444455555555555554322211
Q ss_pred CchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCc--cceeeEeeeccch
Q 000861 474 LRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGA--VDSYVFLAPVIRP 527 (1249)
Q Consensus 474 ~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~--~d~~~~l~P~l~~ 527 (1249)
....+++.++.|.+.|-|-.+=.+++.+|-...+.+.. ..++.++-|-+-.
T Consensus 235 ---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~t 287 (734)
T KOG1061|consen 235 ---REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVT 287 (734)
T ss_pred ---hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 12345777777777777777777777777666666554 3444444443333
No 442
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.32 Score=61.16 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHh-HHHHHHHHcc
Q 000861 373 PKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEY-LLPYIEQALS 451 (1249)
Q Consensus 373 ~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~-llPll~q~L~ 451 (1249)
+|.++.+|..+|+-++.+ +.....+.+++-+...++|++.+||..-+-+|..+- .++++-+.+- +.-++..++.
T Consensus 102 ~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~g~~~~l~~l~~ 176 (757)
T COG5096 102 QDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHELGLIDILKELVA 176 (757)
T ss_pred cCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcccHHHHHHHHhh
Confidence 589999999999877653 455677789999999999999999998887777664 3677777666 7777788888
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccc---cCCC-HHHHHHHHHHHHHHh
Q 000861 452 DATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLL---CYPS-QWVRRSVVTFIAASS 509 (1249)
Q Consensus 452 D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll---~hpn-~wiR~~~~~~i~~~a 509 (1249)
|+++.|+.+|+.+|..+.+. ..+....++...+-.+. ..-+ .|.+...++.+..-.
T Consensus 177 D~dP~Vi~nAl~sl~~i~~e--~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~ 236 (757)
T COG5096 177 DSDPIVIANALASLAEIDPE--LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERV 236 (757)
T ss_pred CCCchHHHHHHHHHHHhchh--hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccC
Confidence 99999999999999999886 22222223333333322 2222 788887777655443
No 443
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.21 E-value=0.12 Score=58.88 Aligned_cols=59 Identities=19% Similarity=0.386 Sum_probs=44.7
Q ss_pred HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccC-----CCC-CcchhhchhhhccCCC
Q 000861 230 DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFP-----PSD-AKIFPEYILPMLSMLP 288 (1249)
Q Consensus 230 ~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~-----~~~-~~if~eyilP~l~~l~ 288 (1249)
..+..++|.++.+++|.++.+|..+++.|..++..+..-. ..+ ..+|-+-+.|.+..|.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP 179 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLP 179 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999999999999998765321 000 4456666777766655
No 444
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.20 E-value=0.29 Score=62.39 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=70.1
Q ss_pred ecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCC
Q 000861 1005 SSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDG 1084 (1249)
Q Consensus 1005 s~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~ 1084 (1249)
.....|+-.|+..|+.+..|......+|..+ .|+.+.+-.. ....++|-.++.+..||.+-... ..... ..+.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~---~p~~K~aqlt--~e~tflGls~n~lfriDpR~~~~-k~v~~-~~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI---APDSKFAQLT--NEQTFLGLSDNSLFRIDPRLSGN-KLVDS-QSKQ 573 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEe---cccccccccC--CCceEEEECCCceEEeccCCCCC-ceeec-cccc
Confidence 4567899999999999999997655555554 4554311111 12467888899999999884321 11110 0000
Q ss_pred CCCcccccccccCCCCCCCCCccccccccccccccccCCCCCCCCCeEEEeecCCCeEEEEeCCCcEEEEeC
Q 000861 1085 DTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDH 1156 (1249)
Q Consensus 1085 ~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg~L~tgs~Dg~IriWDl 1156 (1249)
........|++-+.+|+||.|+.+|.||+||-
T Consensus 574 ----------------------------------------Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 574 ----------------------------------------YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR 605 (794)
T ss_pred ----------------------------------------cccCCCceEEEecCCceEEEEeCCCcEEeecc
Confidence 01112577889899999999999999999993
No 445
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.09 E-value=0.29 Score=54.51 Aligned_cols=217 Identities=16% Similarity=0.207 Sum_probs=142.9
Q ss_pred HHHHHhcCC-CChhHHHHHHHHHHHHhccccccCCCCCcchhh-chhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 000861 237 PHVIAMLSD-PAAIVRCAALETLCDILPLVRNFPPSDAKIFPE-YILPMLSMLPDDPEESVRICYASNIAKLALTAYGFL 314 (1249)
Q Consensus 237 P~~~~ll~D-~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~e-yilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~ 314 (1249)
..++.+|+. ..|.++..|+-+++.... +|. +-.++-+ =.+|.+..+..++++.||.....++..||....
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aa----f~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--- 86 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAA----FPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--- 86 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc----Chh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh---
Confidence 455667765 578888888888876543 221 1222222 378899999999999999766666665544322
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhc
Q 000861 315 VHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFF 394 (1249)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~ 394 (1249)
........+-.++..++++ .-+++|..+.|+-|..|+...
T Consensus 87 ---------------------------------------n~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~ 126 (254)
T PF04826_consen 87 ---------------------------------------NQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTN 126 (254)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCc
Confidence 1112223444444444442 346889999888888887666
Q ss_pred CccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhc--ccChhhHHHhHHHHHHHHccCC-cHHHHHHHHHHHHHHHhc
Q 000861 395 GQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCF--FVGERSVEEYLLPYIEQALSDA-TEAVIVNALDCLAILCKS 471 (1249)
Q Consensus 395 G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~--~lG~~~~~~~llPll~q~L~D~-~e~V~~~~l~~l~~l~~~ 471 (1249)
.....--.-+|++..+|...+..+|.-....++.++. ....+-+....++-++.++... ..++...+|.-+..+.+.
T Consensus 127 ~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 127 DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 5444445578999999999999999999999999883 3345555555666777777775 588888888888887652
Q ss_pred ---C--CC-----chHHH-------HHHHHHhcccccCCCHHHHHHH
Q 000861 472 ---G--YL-----RKRIL-------LEMIERAFPLLCYPSQWVRRSV 501 (1249)
Q Consensus 472 ---g--l~-----~~~~~-------~~l~~~~~~ll~hpn~wiR~~~ 501 (1249)
+ .+ .+..+ -.+..++..+..||..=||.-+
T Consensus 207 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 207 IKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 1 11 11111 1366677788889888777643
No 446
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.09 E-value=0.051 Score=45.11 Aligned_cols=53 Identities=21% Similarity=0.064 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhhhhhcccChh--hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000861 416 EQLRAVFYGQIVYVCFFVGER--SVEEYLLPYIEQALSDATEAVIVNALDCLAIL 468 (1249)
Q Consensus 416 w~lR~a~~~~i~~la~~lG~~--~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l 468 (1249)
|+||.+-+..|..++...+.. .+...++|.++..|.|+++.||.++..+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 889999888887766444433 24468999999999999999999999988764
No 447
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=1.1 Score=54.81 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=82.6
Q ss_pred hhhcCCCHHHHHHHHhhhhhhhcccCh-hhHHHhHHHHHHHHcc-CCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Q 000861 409 AFLNDRDEQLRAVFYGQIVYVCFFVGE-RSVEEYLLPYIEQALS-DATEAVIVNALDCLAILCKSGYLRKRILLEMIERA 486 (1249)
Q Consensus 409 t~lnD~~w~lR~a~~~~i~~la~~lG~-~~~~~~llPll~q~L~-D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~ 486 (1249)
+|+.++...+|---+|+++.+|..=-. +.+..+ .-.++..|+ +.+-.||.+|+.-|-.||..+- .+ .++...
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N--ak---~IV~el 409 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN--AK---QIVAEL 409 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh--HH---HHHHHH
Confidence 344667777888889999999977333 344334 778888888 9999999999999999999432 23 688899
Q ss_pred cccccCCCHHHHHHHHHHHHHHhhcCCcccee
Q 000861 487 FPLLCYPSQWVRRSVVTFIAASSESLGAVDSY 518 (1249)
Q Consensus 487 ~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~ 518 (1249)
+.++.|-.+-||+..+-=++.+|+..-.+..|
T Consensus 410 LqYL~tAd~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 410 LQYLETADYSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999887766443
No 448
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.88 E-value=6.8 Score=44.20 Aligned_cols=208 Identities=12% Similarity=0.115 Sum_probs=112.7
Q ss_pred ceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceee--------EeeccCCceEEEE--EecCC-CEEEEEeCCC
Q 000861 837 AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL--------TYHLEGSRALCTM--MLRHS-AQVVVGACDG 905 (1249)
Q Consensus 837 ~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~--------t~~~h~~~V~sl~--fspdg-~~Lasgs~Dg 905 (1249)
.|..+...++-+.++.-+ ||.+.++++............. ..-.....+...+ -...+ ..|+++ ...
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk 114 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKK 114 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECC
Confidence 499999999877666654 4999999998766432110000 0011112343333 11233 345544 445
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
.|.+|.... ... .+. ...+.+... +.+.++. |..+ .++.|.. ....+.|+.++.....+.....
T Consensus 115 ~i~i~~~~~-~~~-----~f~--~~~ke~~lp-~~~~~i~-~~~~-----~i~v~~~-~~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 115 KILIYEWND-PRN-----SFS--KLLKEISLP-DPPSSIA-FLGN-----KICVGTS-KGFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred EEEEEEEEC-Ccc-----ccc--ceeEEEEcC-CCcEEEE-EeCC-----EEEEEeC-CceEEEecCCCCceEEeCccCC
Confidence 899999871 100 110 234444433 6678887 6655 7777774 4588899997765443321111
Q ss_pred ----------CCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEE
Q 000861 986 ----------EGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIY 1055 (1249)
Q Consensus 986 ----------~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~ 1055 (1249)
..++..+.++ ++.+|++. +..-.+.|. .|.+.+.....-......+.+ . .++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~-~-----------~pyli 242 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY-S-----------SPYLI 242 (275)
T ss_pred cchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE-E-----------CCEEE
Confidence 1233333443 34555543 223333343 454443111111224455665 2 23666
Q ss_pred EEECCCeEEEEECCCCceeEEEec
Q 000861 1056 VAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1056 t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
+.+. +.|.||++.+++.++++..
T Consensus 243 ~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 243 AFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EECC-CEEEEEECcCCcEEEEEEC
Confidence 6555 5699999999999998874
No 449
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.83 E-value=10 Score=45.34 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCC------cc-cCC--CCCEEEEEE
Q 000861 988 YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA------AV-STT--ARPLIYVAA 1058 (1249)
Q Consensus 988 ~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~------~~-~~~--~~~~l~t~s 1058 (1249)
.+.+++.+|++++.++...=|.|.++|+..+..++.|+.-....+.-+.. ...+.. .. ... .-.+++-+-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~-~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEV-PEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEe-ecccccccccccccCCCCcceEEEEEEec
Confidence 47889999999999998888999999999999999997533332222222 111110 00 000 111233344
Q ss_pred CCCeEEEEECCCCceeEEEec
Q 000861 1059 GCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1059 ~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
.-|.|.||.+++|.++..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 578999999999999888875
No 450
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.11 Score=62.28 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=61.1
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceE-EEEEecCCCEEEEEeCCCeEEEEEcc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL-CTMMLRHSAQVVVGACDGIIHMFSVD 913 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~-sl~fspdg~~Lasgs~Dg~I~vwdv~ 913 (1249)
-.|..+.|+|.-.++|++..+|.|-+.... .+ ...+++.|+..++ +++|.|||+.||+|-.||+|++.|++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cc------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 357788999999999999999999888877 33 2556776777677 99999999999999999999999999
No 451
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=1 Score=56.31 Aligned_cols=198 Identities=19% Similarity=0.177 Sum_probs=135.5
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhh--cCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSL--FIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSD 272 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~--~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~ 272 (1249)
-++-..+.+.+ .....|-.|+..+..+.+ .-.+-...+.++-.+..+++|.++-|=-.|++.++.++.
T Consensus 728 ~~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--------- 797 (982)
T KOG4653|consen 728 PLQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--------- 797 (982)
T ss_pred HHHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH---------
Confidence 37778888888 888899999999999998 444556778899999999999999999999998887776
Q ss_pred CcchhhchhhhccCCC-C---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhc
Q 000861 273 AKIFPEYILPMLSMLP-D---DPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQR 348 (1249)
Q Consensus 273 ~~if~eyilP~l~~l~-~---D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1249)
++||-|||-+...- + -+..--|+-+.+.|..++...+ ++.+
T Consensus 798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---el~~------------------------------ 842 (982)
T KOG4653|consen 798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---ELVF------------------------------ 842 (982)
T ss_pred --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc---cHHH------------------------------
Confidence 35667788775421 1 1123456667788877765444 3322
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCc---cccchhhhhhHhhhhcCCCHHHHHHHHhh
Q 000861 349 LNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQ---RQSNDFLLPILPAFLNDRDEQLRAVFYGQ 425 (1249)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~---~~~~d~lLp~l~t~lnD~~w~lR~a~~~~ 425 (1249)
..++.|...|..-+. |++.+-|..-+.+++.||...-. +-.-+++--.+.-.--|....+|.|-+..
T Consensus 843 --------~y~~~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~l 912 (982)
T KOG4653|consen 843 --------KYKAVLINTFLSGVR--EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHL 912 (982)
T ss_pred --------HHHHHHHHHHHHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHH
Confidence 223456666666663 55667799999999999987543 22222221122222238999999999999
Q ss_pred hhhhhcccChhhHHHhHHHHHHHHccC
Q 000861 426 IVYVCFFVGERSVEEYLLPYIEQALSD 452 (1249)
Q Consensus 426 i~~la~~lG~~~~~~~llPll~q~L~D 452 (1249)
|..+-.-.| +.+||++-..|.|
T Consensus 913 i~~lL~~tg-----~dlLpilr~~l~D 934 (982)
T KOG4653|consen 913 LAELLNGTG-----EDLLPILRLLLID 934 (982)
T ss_pred HHHHHhccc-----hhhHHHHHHHHHH
Confidence 988877666 4566655333333
No 452
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.51 E-value=15 Score=47.15 Aligned_cols=211 Identities=12% Similarity=0.122 Sum_probs=108.7
Q ss_pred CceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEcccc
Q 000861 836 SAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHI 915 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~ 915 (1249)
..|.-..|-.|..+|.++..||.+.-+.+....... ...........++.--.|+..++.-+.|..|.-..+|.-.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l--sd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-- 659 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL--SDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-- 659 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceE--ccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC--
Confidence 455556666678899999999999877554332111 1111112223456666676655544445556666666655
Q ss_pred ccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEc
Q 000861 916 SRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTG 995 (1249)
Q Consensus 916 ~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~s 995 (1249)
+++ .|+ ...-..+..++.|+.+.. ...+++++ .+.+.+.-+..-+.+..-+ -+-......+++.
T Consensus 660 ----~kL-v~s--------pls~kev~~~c~f~s~a~-~d~l~~~~-~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q 723 (1096)
T KOG1897|consen 660 ----GKL-VYS--------PLSLKEVNHMCPFNSDAY-PDSLASAN-GGALTIGTIDEIQKLHIRT-VPLGESPRRICYQ 723 (1096)
T ss_pred ----CcE-EEe--------ccchHHhhhhcccccccC-CceEEEec-CCceEEEEecchhhcceee-ecCCCChhheEec
Confidence 332 011 011122334444555431 23555554 4556665554333322222 2235667778887
Q ss_pred CCCCEEEEEecC--------------CcEEEEeCCCCCcccccccCCCCCe---eEEEEEcCCCCCcccCCCCCEEEEEE
Q 000861 996 PCGNWFVSGSSR--------------GVLTLWDLRFLVPVNSWQYSQVCPI---EKMCLFVPPPNAAVSTTARPLIYVAA 1058 (1249)
Q Consensus 996 pdg~~L~sgs~d--------------G~I~lWDlr~~~~l~s~~~~~~~~I---~~l~~~sp~g~~~~~~~~~~~l~t~s 1058 (1249)
+....+.+.+.. ..++++|-.+-+.+...+......+ .+..| ..+.+ .++++|+
T Consensus 724 ~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~-~~d~~--------t~~vVGT 794 (1096)
T KOG1897|consen 724 ESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF-TDDPN--------TYYVVGT 794 (1096)
T ss_pred ccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee-cCCCc--------eEEEEEE
Confidence 755455444332 1377788777666655443333333 34446 44422 3677776
Q ss_pred C----------CCeEEEEECCCCceeE
Q 000861 1059 G----------CNEVSLWNAENGSCHQ 1075 (1249)
Q Consensus 1059 ~----------Dg~I~vWDl~tg~~~~ 1075 (1249)
+ .|.|.+|.+..+..++
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~~~L~ 821 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEELNSLE 821 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecCCcee
Confidence 4 3667777776633333
No 453
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.45 E-value=2.6 Score=49.87 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=92.2
Q ss_pred CHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhc----C--CCHHHHHHHHhhhhhhhcccC---------------
Q 000861 376 TPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLN----D--RDEQLRAVFYGQIVYVCFFVG--------------- 434 (1249)
Q Consensus 376 ~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~ln----D--~~w~lR~a~~~~i~~la~~lG--------------- 434 (1249)
....|+|+..=+..||..++.+ ....+..++..+++ + .||+-+-+-+-.+..+|....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 3566667666688999998764 33445566666666 3 599999888888888875552
Q ss_pred hhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHH
Q 000861 435 ERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFI 505 (1249)
Q Consensus 435 ~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i 505 (1249)
.+++.++++|-+. .=....+.++..|++.+...-. .+.+..+.+++|.++.++.++++=|+.-|...|
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~--~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRN--QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGG--GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 4567888999888 4456778899999999999888 688999999999999999999999988776544
No 454
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=0.11 Score=65.69 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=73.4
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEE
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l 1035 (1249)
.++.|+..|.|...|++..-. +-.......++|++++|+.+|..++.|-.+|.|.+||+..+..++.+.. +..+...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccceE
Confidence 789999999999999876522 1223334578999999999999999999999999999999888887764 55555555
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
-+..-.++ ...++++...|. +|..
T Consensus 179 i~v~~t~~-------nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQ-------NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCC-------CcEEEEccCCCc--eEEE
Confidence 44111111 225666666664 5654
No 455
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.37 E-value=1.5 Score=50.62 Aligned_cols=120 Identities=24% Similarity=0.297 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000861 236 LPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLV 315 (1249)
Q Consensus 236 lP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~ 315 (1249)
|-.++..+.|.....|.+|++.+.+++..-- .+....-..+-|+..+.+.++-....=+...+..++-|+-+.+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg---- 118 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG---- 118 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC----
Confidence 3344667788889999999999998885310 0000001112234444443332222122223344444443322
Q ss_pred HHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcC
Q 000861 316 HSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFG 395 (1249)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G 395 (1249)
...+.+.+.+.+.|.+...++|....+.+|.+.+.-|. +|.|+|
T Consensus 119 -----------------------------------~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLa-i~~fv~ 162 (309)
T PF05004_consen 119 -----------------------------------AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALA-ICTFVG 162 (309)
T ss_pred -----------------------------------CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH-HHHHhh
Confidence 01133445578888888888754445677777766555 444554
Q ss_pred cc
Q 000861 396 QR 397 (1249)
Q Consensus 396 ~~ 397 (1249)
-.
T Consensus 163 ~~ 164 (309)
T PF05004_consen 163 GS 164 (309)
T ss_pred cC
Confidence 43
No 456
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.36 E-value=1.2 Score=51.25 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=117.9
Q ss_pred HHhhhccCCCchhHHHHHHHHHH-HhhcCChHH---HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCc
Q 000861 199 LCSCVRNVKLPHYRRAAILLLKS-SSLFIDDED---RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAK 274 (1249)
Q Consensus 199 i~s~~r~~~~~~~r~~a~~ll~~-l~~~~~de~---~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~ 274 (1249)
..-.+.+ |+...|..|++-|.. |..++-.+. +...++.-+...++-...+=++.|++.++-++-.+... .+..
T Consensus 48 ~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g--~~~~ 124 (309)
T PF05004_consen 48 AIDLLTE-KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG--EDSE 124 (309)
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC--ccHH
Confidence 3455566 789999999986665 444444443 35567888888888766677788888777655443311 2344
Q ss_pred chhhchhhhccCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchh
Q 000861 275 IFPEYILPMLSMLPDDPE--ESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNAD 352 (1249)
Q Consensus 275 if~eyilP~l~~l~~D~~--~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1249)
.+-+.+.|.|+..+.|.+ ..+|.+++.||+-++-.+.. ..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~--------------------------------------d~ 166 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS--------------------------------------DE 166 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC--------------------------------------Ch
Confidence 556679999999998876 45777777777766544330 01
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHhchhhhhhcCcccc---chhhhhhHhhhhcCCCHHHHH
Q 000861 353 VQLSQLRKSIAEVVQELVMGPKQ---------TPSIRRALLQDIGNLCSFFGQRQS---NDFLLPILPAFLNDRDEQLRA 420 (1249)
Q Consensus 353 ~~~~~~~~~l~~~~~~Ll~~~D~---------~~~Vr~all~~i~~l~~f~G~~~~---~d~lLp~l~t~lnD~~w~lR~ 420 (1249)
++...+.+.+.-+|.......|. ++.|..|+|+.-.-|.-.....+. .+..+|.|.++|...|-.||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22222223333233322110122 356788888775555555444322 233578888888888888888
Q ss_pred HHHhhhhhhhccc
Q 000861 421 VFYGQIVYVCFFV 433 (1249)
Q Consensus 421 a~~~~i~~la~~l 433 (1249)
|--++|-.+....
T Consensus 247 AAGEaiAll~E~~ 259 (309)
T PF05004_consen 247 AAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHHh
Confidence 8877776654333
No 457
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=3.3 Score=47.68 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=101.5
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeec-cCCceEEEEEecCCCEEEEEeCC---------CeE
Q 000861 838 VNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL-EGSRALCTMMLRHSAQVVVGACD---------GII 907 (1249)
Q Consensus 838 V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~-h~~~V~sl~fspdg~~Lasgs~D---------g~I 907 (1249)
+.++..-.++..|+++. .-+.+++..++.....+ .....+ ...........|+|.+.++.... ..=
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~--~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLL--AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEe--ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 34444433444555443 34566776554421000 001111 11355677888888766553330 011
Q ss_pred EEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEEC-CCeEEEEEcCC--Ccc---ceeee
Q 000861 908 HMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQ-NCGIHLWDTRS--NSN---TWTLK 981 (1249)
Q Consensus 908 ~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~-dg~I~iwDlrt--~~~---~~~l~ 981 (1249)
.+|.++. ....++.+..+-.....++ |+|| ++.++.+.. .+.|+.|++.. +.. .....
T Consensus 144 ~lyr~~p------------~g~~~~l~~~~~~~~NGla-~SpD---g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 144 SLYRVDP------------DGGVVRLLDDDLTIPNGLA-FSPD---GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred eEEEEcC------------CCCEEEeecCcEEecCceE-ECCC---CCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence 3444430 1112333333333445677 9999 556665544 58899988752 211 11122
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEecCC-cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 982 AIPEEGYVSSLVTGPCGNWFVSGSSRG-VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 982 ~~~h~~~I~sl~~spdg~~L~sgs~dG-~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
.....+..-.++.+.+|++-+++..+| .|..|+.. ++.+..+..+. ..+.+++|-.|+.+
T Consensus 208 ~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~ 268 (307)
T COG3386 208 FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLN 268 (307)
T ss_pred ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcC
Confidence 223567888899999998776555554 89999997 99988887654 56778888344444
No 458
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.24 E-value=12 Score=45.23 Aligned_cols=245 Identities=12% Similarity=0.101 Sum_probs=122.2
Q ss_pred CCCCCCCCCcccccc-CC----CCCccC-CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCC-----------cEEEE
Q 000861 800 SPADLTGLPSFVRTS-SI----PDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDS-----------TVKVW 862 (1249)
Q Consensus 800 ~~~s~~G~~~~~~s~-~~----~~~~W~-~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~Dg-----------tVkIW 862 (1249)
..++|+|..++..-. ++ ...+.+ .+|+.+..--.... -..+.|.+|++.|+....+. .|+.|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 346788887654321 11 245666 57876653222222 22399999988665554332 37788
Q ss_pred ECCCCccccccceeeEeeccCCc--eEEEEEecCCCEEEEEeCC----CeEEEEEccccccCCCccccccCccceeeecC
Q 000861 863 DSRKLEKDISFRSRLTYHLEGSR--ALCTMMLRHSAQVVVGACD----GIIHMFSVDHISRGLGNVEKYSGISDIKKKDT 936 (1249)
Q Consensus 863 D~~~~~~~~~~~~~~t~~~h~~~--V~sl~fspdg~~Lasgs~D----g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~ 936 (1249)
++.+.... ....+...... ...+..++++++++..+.. ..+.+.+..... ......+.+..
T Consensus 208 ~~gt~~~~----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~---------~~~~~~~~l~~ 274 (414)
T PF02897_consen 208 KLGTPQSE----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG---------SPDAKPKLLSP 274 (414)
T ss_dssp ETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT---------TSS-SEEEEEE
T ss_pred ECCCChHh----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC---------CCcCCcEEEeC
Confidence 88776531 23456554443 5678889999987764332 235555655100 00112223322
Q ss_pred CC-CcEEEEEEecCCCCCccEEEEEE---CCCeEEEEEcCCCcc-ceeeecCCCCC--ceEEEEEcCCCCEEEE-EecCC
Q 000861 937 KE-GAIVTLVNYNTDNCASHMFMYST---QNCGIHLWDTRSNSN-TWTLKAIPEEG--YVSSLVTGPCGNWFVS-GSSRG 1008 (1249)
Q Consensus 937 h~-~~V~~l~~fs~d~~~g~~L~sgs---~dg~I~iwDlrt~~~-~~~l~~~~h~~--~I~sl~~spdg~~L~s-gs~dG 1008 (1249)
.. +....+. .. . +.+++... ..+.|...++..... .+......+.. .+..+.. .+.+|+. ...++
T Consensus 275 ~~~~~~~~v~-~~-~---~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 275 REDGVEYYVD-HH-G---DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENG 347 (414)
T ss_dssp SSSS-EEEEE-EE-T---TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETT
T ss_pred CCCceEEEEE-cc-C---CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECC
Confidence 33 3333343 22 2 22333332 246788888887764 12212223333 4555554 3445554 44444
Q ss_pred --cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEEC---CCeEEEEECCCCcee
Q 000861 1009 --VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAG---CNEVSLWNAENGSCH 1074 (1249)
Q Consensus 1009 --~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~---Dg~I~vWDl~tg~~~ 1074 (1249)
.|++||+..+........+..+.|..+.. .+++. .+.+..++ -+++..||+.+++..
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~-~~~~~--------~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEAGSVSGVSG-DFDSD--------ELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSSSEEEEEES--TT-S--------EEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ccEEEEEECCCCcEEeeecCCcceEEeccCC-CCCCC--------EEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 48899997344444444444445555544 44443 23333333 257899999988754
No 459
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.67 Score=54.80 Aligned_cols=147 Identities=13% Similarity=0.135 Sum_probs=91.9
Q ss_pred CCEEE-EEeCCCeEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCc----cEEEEEECCCeEEEE
Q 000861 895 SAQVV-VGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCAS----HMFMYSTQNCGIHLW 969 (1249)
Q Consensus 895 g~~La-sgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g----~~L~sgs~dg~I~iw 969 (1249)
.+.++ ++.....++-.|++ .|++ +..|+.+.. |.-+. +.|+.... ..-+.|-.+..|+-|
T Consensus 345 snlil~~~~~~~~l~klDIE-----~GKI--------VeEWk~~~d-i~mv~-~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIE-----RGKI--------VEEWKFEDD-INMVD-ITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred cceEeeCCCCcCcceeeecc-----ccee--------eeEeeccCC-cceee-ccCCcchhcccccccEEeecCCceEEe
Confidence 33443 34444556667777 3544 666666655 33333 55653211 123456778999999
Q ss_pred EcCCCcc--ceeee--cCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCc
Q 000861 970 DTRSNSN--TWTLK--AIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAA 1045 (1249)
Q Consensus 970 Dlrt~~~--~~~l~--~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~ 1045 (1249)
|+|-... +..-+ .........|++-..+| ++++|+.+|.|++||- .+..-++.-.+-+.+|..+.. +.+|.
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdv-tadGK-- 484 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDV-TADGK-- 484 (644)
T ss_pred cccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEe-eccCc--
Confidence 9995433 11111 11122345566666666 8999999999999997 676666655667889999999 88987
Q ss_pred ccCCCCCEEEEEECCCeEEEEECC
Q 000861 1046 VSTTARPLIYVAAGCNEVSLWNAE 1069 (1249)
Q Consensus 1046 ~~~~~~~~l~t~s~Dg~I~vWDl~ 1069 (1249)
+ +.|+.+..+.+.+..
T Consensus 485 -------w-il~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 -------W-ILATCKTYLLLIDTL 500 (644)
T ss_pred -------E-EEEecccEEEEEEEe
Confidence 4 445566677777653
No 460
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=2.4 Score=52.53 Aligned_cols=200 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred CccCCCCcEEEEeccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEE
Q 000861 819 SGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQV 898 (1249)
Q Consensus 819 ~~W~~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~L 898 (1249)
.+++..|+++.++.-..+.+..+.|+.+.. |+.-..||++.||++...... .+ ..-+......|..+.|..+|-.+
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie-~~--svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIE-SN--SVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhc-cc--ccccccccCceeEEEEecCceEE
Confidence 445578999998887777899999998765 555688999999998754321 00 01112233345555555565333
Q ss_pred EEEeCCCeEEE-EEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccc
Q 000861 899 VVGACDGIIHM-FSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 899 asgs~Dg~I~v-wdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
.+ .+|.+.+ -++.. ....++. ......-+..|...+.|+... ..++-....-...++...+...
T Consensus 143 lt--~~g~v~~i~~~~~-----~~~~~~~------diP~~~~~~~~Wt~~~~~~~~-~~ll~v~~~v~~~~~q~~~~~~- 207 (829)
T KOG2280|consen 143 LT--VSGQVILINGVEE-----PKLRKMP------DIPYNELPKSCWTVFQPHRQS-TILLDVDVAVGLHICQVEESRV- 207 (829)
T ss_pred Ee--cCCcEEEEcCCCc-----chhhhCC------CCCCccCCCcceeEecCCCcc-eeEEeechhhhhcccceecccc-
Confidence 33 3343332 22220 0000000 001111122333324443111 1221111000111122221111
Q ss_pred eeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCCeeEEEE
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1037 (1249)
Q Consensus 978 ~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~I~~l~~ 1037 (1249)
.........+.+..+.+||++++|+.-+.+|.|.+-+....+....+..+...+-..++|
T Consensus 208 q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~W 267 (829)
T KOG2280|consen 208 QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAW 267 (829)
T ss_pred cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhcee
Confidence 111111124667888999999999999999999999988887777766544444446666
No 461
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.95 E-value=1.6 Score=56.54 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHhchhhhhhc----Ccc-----------ccchhhhhhHh---hhhcCCCHHHHHHHHhhhhhhh-cccC
Q 000861 374 KQTPSIRRALLQDIGNLCSFF----GQR-----------QSNDFLLPILP---AFLNDRDEQLRAVFYGQIVYVC-FFVG 434 (1249)
Q Consensus 374 D~~~~Vr~all~~i~~l~~f~----G~~-----------~~~d~lLp~l~---t~lnD~~w~lR~a~~~~i~~la-~~lG 434 (1249)
-+.+.+-..++++|...+.+- |.. ..--.++++|. ++++-....+|.|+.+.+..+. ..+-
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345666666777766655554 111 11122344444 4455679999999999987754 3333
Q ss_pred hh-------hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHH
Q 000861 435 ER-------SVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAA 507 (1249)
Q Consensus 435 ~~-------~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~ 507 (1249)
.+ .+...++-++++-|.|....||.+|++-+..|++...+.-...-+++..++.=+.+-+-.||..|++++..
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~ 425 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSS 425 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 11 22234888999999999999999999999999999777667777999999999999999999999999887
Q ss_pred Hhh
Q 000861 508 SSE 510 (1249)
Q Consensus 508 ~a~ 510 (1249)
+-.
T Consensus 426 ~L~ 428 (1251)
T KOG0414|consen 426 LLD 428 (1251)
T ss_pred HHh
Confidence 653
No 462
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.90 E-value=1.7 Score=48.16 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=106.8
Q ss_pred HHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcc
Q 000861 196 ASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKI 275 (1249)
Q Consensus 196 l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~i 275 (1249)
|+++....+....++.....++.|..++.+=. ....-++-.+..|.+.+..+++..+++-++.+.+. +...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-------~~r~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-------NDRH 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-------CchH
Confidence 45566656666999999999999999987664 33456667777788888888899999988877764 2334
Q ss_pred hhhchhhhccC---------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhh
Q 000861 276 FPEYILPMLSM---------LPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQL 346 (1249)
Q Consensus 276 f~eyilP~l~~---------l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1249)
|+ +|-+.+.. .-.+..+.+.++.|.++..+...-.. .
T Consensus 73 f~-~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~------------------------------ 118 (234)
T PF12530_consen 73 FP-FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---H------------------------------ 118 (234)
T ss_pred HH-HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---h------------------------------
Confidence 52 34444433 11344566777767777666543221 0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhh--hhcCccccchhhhhhHhhhhcCCCHHH
Q 000861 347 QRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLC--SFFGQRQSNDFLLPILPAFLNDRDEQL 418 (1249)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~--~f~G~~~~~d~lLp~l~t~lnD~~w~l 418 (1249)
-..+++.+...|. +++++.++...++.|..|| .+++...+=.+|.|++ -.|..+.|
T Consensus 119 ------------g~~ll~~ls~~L~-~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l---~~~~rp~v 176 (234)
T PF12530_consen 119 ------------GVDLLPLLSGCLN-QSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL---SLDYRPLV 176 (234)
T ss_pred ------------HHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc---CCccchHH
Confidence 1355556666663 3567788888889999999 4455555666677766 34444443
No 463
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.85 E-value=0.52 Score=55.97 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=52.6
Q ss_pred chhhHHHHHhhhccCCCchhHHHHHHHHHHHhhc-CChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000861 192 IVLIASLLCSCVRNVKLPHYRRAAILLLKSSSLF-IDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILP 263 (1249)
Q Consensus 192 ~~~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~-~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~ 263 (1249)
..++-+++-+-+.+ |.-.+-+.++..+.+|++. ++++. ++..+..+..+|+-+....|-+|+|.|.++..
T Consensus 262 ~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 262 LLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 45567777777777 8888888888888888764 46554 46777777888888888888888888887765
No 464
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.72 E-value=1.5 Score=47.90 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=108.6
Q ss_pred HhhHHHHHHhcCC--CChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 000861 233 QRVLPHVIAMLSD--PAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTA 310 (1249)
Q Consensus 233 ~~ilP~~~~ll~D--~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a 310 (1249)
.+-+|.++..+.| .+|+||-.|.++|..+... -+++.++++.+||-..||-+....|..|-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~~--------------~~~~~l~k~~~dp~~~v~ETc~lAi~rle--- 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP--------------ESLEILTKYIKDPCKEVRETCELAIKRLE--- 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcch--------------hhHHHHHHHhcCCccccchHHHHHHHHHH---
Confidence 4567888888887 6999999999999987721 27888888889999999987444443331
Q ss_pred HHHHHHHHHhhh---cccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHH----HHHHHHH-----hcCCCCCHH
Q 000861 311 YGFLVHSIRLSE---AGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSI----AEVVQEL-----VMGPKQTPS 378 (1249)
Q Consensus 311 ~rf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~L-----l~~~D~~~~ 378 (1249)
--+.+.. ...+.+..+.. ... ...+..++..| .+.|..- |.. -..-+
T Consensus 129 -----~~~~~~~~~~~~p~~SvdPa~------------p~~---~ssv~~lr~~lld~t~~l~~Ry~amF~LRn-~g~Ee 187 (289)
T KOG0567|consen 129 -----WKDIIDKIANSSPYISVDPAP------------PAN---LSSVHELRAELLDETKPLFERYRAMFYLRN-IGTEE 187 (289)
T ss_pred -----HhhccccccccCccccCCCCC------------ccc---cccHHHHHHHHHhcchhHHHHHhhhhHhhc-cCcHH
Confidence 1111110 00111111100 000 00111111111 1111110 000 00111
Q ss_pred HHHHHHHhch--------hhhhhcCccccchhhhhhHhhhhcCC--CHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHH
Q 000861 379 IRRALLQDIG--------NLCSFFGQRQSNDFLLPILPAFLNDR--DEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 448 (1249)
Q Consensus 379 Vr~all~~i~--------~l~~f~G~~~~~d~lLp~l~t~lnD~--~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q 448 (1249)
--.+++..+. ..+-+||.=+... =+|.++.-|-|. +++||...++++..+| .+.-++.+.+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~-ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~~~~vL~e 258 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPA-AIPSLIKVLLDETEHPMVRHEAAEALGAIA--------DEDCVEVLKE 258 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchh-hhHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHHHHHHHHH
Confidence 1122222221 2455566544333 468888888874 8999999999888777 3566889999
Q ss_pred HccCCcHHHHHHHHHHHHHH
Q 000861 449 ALSDATEAVIVNALDCLAIL 468 (1249)
Q Consensus 449 ~L~D~~e~V~~~~l~~l~~l 468 (1249)
.+.|++..|++.+.-.|..+
T Consensus 259 ~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDML 278 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 99999999999988877654
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.70 E-value=9.2 Score=49.58 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=49.3
Q ss_pred ccEEEEEECCCeEEEEEcCCCccceeeecCCCC------Cce----EEEEEcC--CCCEEEEEec----------CCcEE
Q 000861 954 SHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEE------GYV----SSLVTGP--CGNWFVSGSS----------RGVLT 1011 (1249)
Q Consensus 954 g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~------~~I----~sl~~sp--dg~~L~sgs~----------dG~I~ 1011 (1249)
+..++.++.|+.+...|.++|+.++.+...+.- +.. ..+.-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 348888999999999999999999877431110 000 0111122 1346666653 68999
Q ss_pred EEeCCCCCccccccc
Q 000861 1012 LWDLRFLVPVNSWQY 1026 (1249)
Q Consensus 1012 lWDlr~~~~l~s~~~ 1026 (1249)
-+|.++|+.+..+..
T Consensus 340 A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 340 AFDVNTGALVWAWDP 354 (764)
T ss_pred EEECCCCcEeeEEec
Confidence 999999999887653
No 466
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.68 E-value=13 Score=41.38 Aligned_cols=160 Identities=11% Similarity=0.085 Sum_probs=95.8
Q ss_pred ceEEEEEecCCCEEEEEeCCC--eEEEEEccccccCCCccccccCccceeeecCCCC-cEEEEEEecCCCCCccEEEEEE
Q 000861 885 RALCTMMLRHSAQVVVGACDG--IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEG-AIVTLVNYNTDNCASHMFMYST 961 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg--~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~-~V~~l~~fs~d~~~g~~L~sgs 961 (1249)
-...+.|..+|..+-+.+.-| .|+.+|+. +|++ .+....... ---.+. ...+ +...-.-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-----tg~~--------~~~~~l~~~~FgEGit-~~~d----~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-----TGKV--------LQSVPLPPRYFGEGIT-ILGD----KLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETT-----TSSE--------EEEEE-TTT--EEEEE-EETT----EEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECC-----CCcE--------EEEEECCccccceeEE-EECC----EEEEEEe
Confidence 456788888888888888766 57777777 2332 112221111 111233 2222 2333444
Q ss_pred CCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCC-C---CCeeEEEE
Q 000861 962 QNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQ-V---CPIEKMCL 1037 (1249)
Q Consensus 962 ~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~-~---~~I~~l~~ 1037 (1249)
.++...+||..+-+.+.++..+ +.=..++ .++..|+.......|..+|..+.+....+.... . ..++-+.|
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 5789999999999888888764 3444555 456677777777789999998777666654321 1 24566777
Q ss_pred EcCCCCCcccCCCCCEEEEEEC-CCeEEEEECCCCceeEEEec
Q 000861 1038 FVPPPNAAVSTTARPLIYVAAG-CNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1038 ~sp~g~~~~~~~~~~~l~t~s~-Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
. +| .|++--. ...|...|..+|++...+..
T Consensus 183 -i-~G----------~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 183 -I-NG----------KIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp -E-TT----------EEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred -E-cC----------EEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 3 44 4665554 56799999999999887763
No 467
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=6.4 Score=48.78 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=173.7
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCC
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDA 273 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~ 273 (1249)
++++.+.-..|+ ++.--|-+||+.+-.+.+-..|...+-.+..-.+.+++++.--|+..|+-++.-++..-+ + +
T Consensus 460 fiv~hv~P~f~s-~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~---h- 533 (970)
T COG5656 460 FIVNHVIPAFRS-NYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-S---H- 533 (970)
T ss_pred HHHHHhhHhhcC-cccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-h---h-
Confidence 577888888888 899999999999999999999999999999999999999988999998888877665432 1 1
Q ss_pred cchhhchhhhccCC---CC----CCchhHHHHH----HHHHHH----HHHHH-HHHHHHHHHhhhcccccccCCCCCCCC
Q 000861 274 KIFPEYILPMLSML---PD----DPEESVRICY----ASNIAK----LALTA-YGFLVHSIRLSEAGVLDKLSAPHKSPS 337 (1249)
Q Consensus 274 ~if~eyilP~l~~l---~~----D~~~~VR~~~----A~~l~~----LA~~a-~rf~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1249)
..|.+.+-|.+++| ++ |+=..|--.+ ++.|.. ||... ..|+.++|++-+..
T Consensus 534 ~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens------------- 600 (970)
T COG5656 534 EKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENS------------- 600 (970)
T ss_pred HHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 14555555554443 33 3323333333 334433 34333 45888888774311
Q ss_pred CCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHH
Q 000861 338 SSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQ 417 (1249)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~ 417 (1249)
.+..+...|++.++ .-++....+++..-++.|+|-+.+..++.++..|+=.....|+. --.
T Consensus 601 ------~d~~s~vDDKqmaa--sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy-~Ea---------- 661 (970)
T COG5656 601 ------SDTSSVVDDKQMAA--SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFY-QEA---------- 661 (970)
T ss_pred ------ccccccccHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHH-HHH----------
Confidence 00111112445444 45566666655545889999999999999999997443333321 111
Q ss_pred HHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcH-HHHHHHHHHHHHHHhcC---CCchHHHHHHHHHhcccccC-
Q 000861 418 LRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATE-AVIVNALDCLAILCKSG---YLRKRILLEMIERAFPLLCY- 492 (1249)
Q Consensus 418 lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e-~V~~~~l~~l~~l~~~g---l~~~~~~~~l~~~~~~ll~h- 492 (1249)
+-|++....+..-+-+... -|.-++...|.|+.- .-.+.+.-.|...+--| +.+......++-.+......
T Consensus 662 --~dildg~tf~skeI~pimw--gi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~s 737 (970)
T COG5656 662 --LDILDGYTFMSKEIEPIMW--GIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCS 737 (970)
T ss_pred --HHHHhhhhHHHHHhhhhhh--HHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcc
Confidence 2234444444444443332 466677777877774 34556666677766665 55555444444444433221
Q ss_pred -CC-HHHHHHHHHHHHHHhhcCCcc
Q 000861 493 -PS-QWVRRSVVTFIAASSESLGAV 515 (1249)
Q Consensus 493 -pn-~wiR~~~~~~i~~~a~~l~~~ 515 (1249)
-| .-=|..+++++..++-+++.+
T Consensus 738 E~n~l~D~~~vc~i~e~l~Ln~rd~ 762 (970)
T COG5656 738 EENFLEDFIGVCRIIESLILNIRDE 762 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccch
Confidence 12 234677888888888777654
No 468
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.32 E-value=1.3 Score=51.93 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhchhhhhhcCccccc--hhhhhhHhhhhcCC-CHHHHHHHHhhhhhhhc
Q 000861 356 SQLRKSIAEVVQELVMGPK-QTPSIRRALLQDIGNLCSFFGQRQSN--DFLLPILPAFLNDR-DEQLRAVFYGQIVYVCF 431 (1249)
Q Consensus 356 ~~~~~~l~~~~~~Ll~~~D-~~~~Vr~all~~i~~l~~f~G~~~~~--d~lLp~l~t~lnD~-~w~lR~a~~~~i~~la~ 431 (1249)
++....|+..+.+.|. | .+...|.-.|.-|.++|.-=.....+ +.-+--++.-.+|. +.-+|.|-=++..-++.
T Consensus 324 eq~f~~iL~~l~EvL~--d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLS--DSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 3444566666667674 5 34556666667788888643222212 22233445567776 55677777677777778
Q ss_pred ccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhccccc----CCCHHHHHHHHHHHHH
Q 000861 432 FVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILLEMIERAFPLLC----YPSQWVRRSVVTFIAA 507 (1249)
Q Consensus 432 ~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~~l~~~~~~ll~----hpn~wiR~~~~~~i~~ 507 (1249)
+.+-+.+ ..|-|+++. .++-.-..+|+.+++|+| -+.+..+..+++.++|-+. .+.--||.+++..+.+
T Consensus 402 ~~P~~~I-~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e--~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 402 HLPLQCI-VNISPLILT----ADEPRAVAVIKMLTKLFE--RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred hCchhHH-HHHhhHHhc----CcchHHHHHHHHHHHHHh--hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 8887765 688888876 667777889999999999 6777777777777776654 5688899999999999
Q ss_pred HhhcCCcccee
Q 000861 508 SSESLGAVDSY 518 (1249)
Q Consensus 508 ~a~~l~~~d~~ 518 (1249)
+-..+|..++.
T Consensus 475 mv~~vG~~~me 485 (516)
T KOG2956|consen 475 MVNRVGMEEME 485 (516)
T ss_pred HHHHHhHHhhh
Confidence 99999976543
No 469
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.30 E-value=14 Score=42.52 Aligned_cols=102 Identities=14% Similarity=0.011 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecC-CcEEEEeCCC--CCccc----ccccCCCCCeeEEE
Q 000861 964 CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSR-GVLTLWDLRF--LVPVN----SWQYSQVCPIEKMC 1036 (1249)
Q Consensus 964 g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~d-G~I~lWDlr~--~~~l~----s~~~~~~~~I~~l~ 1036 (1249)
|.|+.+|. .+.....+ ..+-..-+.++||||++.|+..... +.|.-|++.. +..-. .......+..-.++
T Consensus 143 G~lyr~~p-~g~~~~l~--~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 143 GSLYRVDP-DGGVVRLL--DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred ceEEEEcC-CCCEEEee--cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence 44555554 33333222 2234556789999999888777654 7788887752 11111 00101223333444
Q ss_pred EEcCCCCCcccCCCCCEEEEEECCC-eEEEEECCCCceeEEEec
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGCN-EVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~t~s~Dg-~I~vWDl~tg~~~~~l~~ 1079 (1249)
. ..+|. +.+++..+| .|.+|+.. |+....+..
T Consensus 220 v-DadG~---------lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 220 V-DADGN---------LWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred E-eCCCC---------EEEecccCCceEEEECCC-CcEEEEEEC
Confidence 4 44444 333444443 89999988 888877773
No 470
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.30 E-value=7.6 Score=48.45 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCC--ceEE-EEEcCCCCEEEEEec------CCcEEEEeCCCCCcccccc
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG--YVSS-LVTGPCGNWFVSGSS------RGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~--~I~s-l~~spdg~~L~sgs~------dG~I~lWDlr~~~~l~s~~ 1025 (1249)
.++.++.++.+...|.++|+.+|......+.. .+++ -.+. ++ .+++++. +|.|..+|.++|+.+..+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 78888999999999999999999876432211 1111 1111 33 4555543 6899999999998876654
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.25 E-value=0.092 Score=64.95 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=103.2
Q ss_pred eccccCceeEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccceeeEee-ccCCceEEEEEec---CCCEEEEEeCCC
Q 000861 831 LQEHCSAVNEIAISHD-HSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH-LEGSRALCTMMLR---HSAQVVVGACDG 905 (1249)
Q Consensus 831 L~~H~~~V~~la~spd-g~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~-~h~~~V~sl~fsp---dg~~Lasgs~Dg 905 (1249)
++|-.+.|-.+.|... ...+. -.-|..-|||+.-.+..+......+.. .-+..+.-+.|+| +.-++..+-.+|
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 3455666777777431 11111 223678899887543221111111111 1223445566665 556777788889
Q ss_pred eEEEEEccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeecCCC
Q 000861 906 IIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPE 985 (1249)
Q Consensus 906 ~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h 985 (1249)
+|++..++... ...+..|...++.++.|..+ ++...+
T Consensus 206 ~i~lL~~~ra~--------------~~l~rsHs~~~~d~a~~~~g-----~~~l~~------------------------ 242 (1283)
T KOG1916|consen 206 EIRLLNINRAL--------------RSLFRSHSQRVTDMAFFAEG-----VLKLAS------------------------ 242 (1283)
T ss_pred ceeEeeechHH--------------HHHHHhcCCCcccHHHHhhc-----hhhhee------------------------
Confidence 99988877211 12234477777777733222 222111
Q ss_pred CCceEEEEEcCCCCEEEEEecCCcEEEEeCC-----CCCcccccccCCC-CCeeEEEEEcCCCCCcccCCCCCEEEEEEC
Q 000861 986 EGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR-----FLVPVNSWQYSQV-CPIEKMCLFVPPPNAAVSTTARPLIYVAAG 1059 (1249)
Q Consensus 986 ~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr-----~~~~l~s~~~~~~-~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~ 1059 (1249)
++|||..++.++.||.++.|.+. ...++..|+. |. .+-.|..| +......+.-....++++++.
T Consensus 243 --------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp-hd~~p~vC~lc-~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 243 --------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP-HDKHPRVCWLC-HKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred --------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC-CCCCCceeeee-ccccccCCccceeEEEEeccc
Confidence 67888889999999988777653 3456666763 44 33222223 333221222223334555554
Q ss_pred -CCeEEEEECCCCcee
Q 000861 1060 -CNEVSLWNAENGSCH 1074 (1249)
Q Consensus 1060 -Dg~I~vWDl~tg~~~ 1074 (1249)
+..+++|.-...+|.
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 457999998888887
No 472
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.24 E-value=0.27 Score=52.39 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred EEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC-CCCcccccccCCCCCeeEE
Q 000861 957 FMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR-FLVPVNSWQYSQVCPIEKM 1035 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr-~~~~l~s~~~~~~~~I~~l 1035 (1249)
+.+.+.+|.|.-++++..+....-......+ +..-.-+..+++|+.+|.|.+|... ++........+...-...+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Q ss_pred EEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEecccCCCCCCcccccccccCCCCCCCCCcccccccccc
Q 000861 1036 CLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQK 1115 (1249)
Q Consensus 1036 ~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~~~~~~~~~i~~l~~sp~~p~~~~~~s~dg~~~~~~~ 1115 (1249)
.. ..++. +.++++.+|.|+.|++.-++.......+....
T Consensus 109 p~-~~~~~---------~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~------------------------------- 147 (238)
T KOG2444|consen 109 PN-GRDSS---------LGCVGAQDGRIRACNIKPNKVLGYVGQHNFES------------------------------- 147 (238)
T ss_pred cc-ccccc---------eeEEeccCCceeeeccccCceeeeeccccCCC-------------------------------
Q ss_pred ccccccCCCCCCCCCeEEEeecCCCeEEEE--eCCCcEEEEeCC
Q 000861 1116 YRVDELNEPPPRLLGIRSLLPLPGGDLLTG--GTDLKIRRWDHC 1157 (1249)
Q Consensus 1116 ~~~~~~~~~~~~~~~V~sl~~spdg~L~tg--s~Dg~IriWDl~ 1157 (1249)
....+....++++..+ |.|..++.|++.
T Consensus 148 --------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --------------GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred --------------cceeEEecCCceEEeeccccchhhhhcchh
No 473
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.23 E-value=22 Score=45.90 Aligned_cols=90 Identities=8% Similarity=0.051 Sum_probs=56.9
Q ss_pred ceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeee--------cCCCCcEEEEEEecCCCCCccE
Q 000861 885 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKK--------DTKEGAIVTLVNYNTDNCASHM 956 (1249)
Q Consensus 885 ~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l--------~~h~~~V~~l~~fs~d~~~g~~ 956 (1249)
.|..+.++++|+.++..|..| |.|..+.......+....-......+.+ ......|..+. |+|.+.++..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~-WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR-WHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE-EcCCCCCCCe
Confidence 688999999999999988866 5555553110000111000000012222 12344677887 9999766789
Q ss_pred EEEEECCCeEEEEEcCCCcc
Q 000861 957 FMYSTQNCGIHLWDTRSNSN 976 (1249)
Q Consensus 957 L~sgs~dg~I~iwDlrt~~~ 976 (1249)
|+.-+.|+.+++||+...+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 99999999999999975443
No 474
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=0.44 Score=59.05 Aligned_cols=304 Identities=17% Similarity=0.220 Sum_probs=172.7
Q ss_pred hHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccchhhHHHHHhhhc----c-CCCchhHHHHH
Q 000861 142 SDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGIVLIASLLCSCVR----N-VKLPHYRRAAI 216 (1249)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~s~~r----~-~~~~~~r~~a~ 216 (1249)
=+-+..-|.|..|-+..|=+--+.+.|+.|. .-++...+-..+. | -.-|..|-.|+
T Consensus 367 RRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v-------------------t~v~~~~v~~~l~~y~~nPS~nWk~kd~ai 427 (960)
T KOG1992|consen 367 RRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV-------------------TGVFSSEVQRLLDQYSKNPSGNWKKKDRAI 427 (960)
T ss_pred HHhcccCCcchhHHHHHHHHHHHHHHhcchh-------------------HHHHHHHHHHHHHHhccCCCccccccchhh
Confidence 3445677888889988888888888884443 2233333333333 1 25688888888
Q ss_pred HHHHHHhhcCC---------------hHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchh
Q 000861 217 LLLKSSSLFID---------------DEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYIL 281 (1249)
Q Consensus 217 ~ll~~l~~~~~---------------de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyil 281 (1249)
.|+.+++-... .+-....++|++.+-=--+.|++|+.|++-+..+=..+.. -+.=-++
T Consensus 428 yL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~-------~~lm~~~ 500 (960)
T KOG1992|consen 428 YLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGK-------EHLMALL 500 (960)
T ss_pred hhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCCh-------HHHHHHH
Confidence 88888876521 2334566677744322257889999998755433333211 1122256
Q ss_pred hhccCCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHH-HH
Q 000861 282 PMLSMLPDDPEESVRICYA-SNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQ-LR 359 (1249)
Q Consensus 282 P~l~~l~~D~~~~VR~~~A-~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 359 (1249)
|.+-...+-++..| ..|| .++.+| +.+...- ...-|.. +.+.- ..
T Consensus 501 p~li~~L~a~s~vv-hsYAA~aiEki-------l~vre~~------------------------~~~if~~-~~iap~~~ 547 (960)
T KOG1992|consen 501 PRLIRFLEAESRVV-HSYAAIAIEKL-------LTVRENS------------------------NAKIFGA-EDIAPFVE 547 (960)
T ss_pred HHHHHhccCcchHH-HHHHHHHHHhc-------cccccCc------------------------cccccch-hhcchHHH
Confidence 77666666555444 4444 344333 3331110 0000000 01100 01
Q ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhc-----CCCHHHHHHHHhhhhhhhccc
Q 000861 360 KSIAEVVQELVMG-PKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLN-----DRDEQLRAVFYGQIVYVCFFV 433 (1249)
Q Consensus 360 ~~l~~~~~~Ll~~-~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~ln-----D~~w~lR~a~~~~i~~la~~l 433 (1249)
..+...|..+-.+ +-++.-+-++++..|.-+-.-. ...-..+|++|..++. =.+++.-.-+||.|.-+-...
T Consensus 548 ~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i--~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 548 ILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAI--IPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT 625 (960)
T ss_pred HHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhh--hhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 1122222222221 1122333333333221110000 0012235555555542 357888888999999998888
Q ss_pred Chhh------HHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHhcccccCCCHHHHHH----H
Q 000861 434 GERS------VEEYLLPYIEQALSDATEAVIVNALDCLAILCKS--GYLRKRILLEMIERAFPLLCYPSQWVRRS----V 501 (1249)
Q Consensus 434 G~~~------~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~--gl~~~~~~~~l~~~~~~ll~hpn~wiR~~----~ 501 (1249)
+... +++.|+|.++.-|....++.+--+++-|..|++. |-+ -+-...++|.+..||.|=|.+ +
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~i-----p~~~~~l~~~lLsp~lW~r~gNipal 700 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTI-----PDSYSPLFPPLLSPNLWKRSGNIPAL 700 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHhcCHHHHhhcCCcHHH
Confidence 8777 9999999999999999999999999999999997 422 234556678889999999975 4
Q ss_pred HHHHHHHhhc
Q 000861 502 VTFIAASSES 511 (1249)
Q Consensus 502 ~~~i~~~a~~ 511 (1249)
+.++.++-+.
T Consensus 701 vrLl~aflk~ 710 (960)
T KOG1992|consen 701 VRLLQAFLKT 710 (960)
T ss_pred HHHHHHHHhc
Confidence 5555555443
No 475
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=4.2 Score=50.88 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=71.0
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCc
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAK 274 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~ 274 (1249)
++.+|++++.+=-..+.++..+--|-+|+.-++.|.. ..+.|-+..|++-..+-||..|+-+...+...+..
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~Ema-rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------- 175 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMA-RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------- 175 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHh-HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-------
Confidence 4556777777655566778888888899999988875 56889999999999999999999999988876542
Q ss_pred chhhchhhhccCCCCCCchhH
Q 000861 275 IFPEYILPMLSMLPDDPEESV 295 (1249)
Q Consensus 275 if~eyilP~l~~l~~D~~~~V 295 (1249)
..|.++|....+..|.+.=|
T Consensus 176 -l~e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 176 -LVEHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred -HHHHhhHHHHHHHhhcCCce
Confidence 23556777777777665333
No 476
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.91 E-value=19 Score=40.25 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=79.7
Q ss_pred eeeecCCCCcEEEEEEecCCCCCccEEEEEECCC--eEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCC
Q 000861 931 IKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNC--GIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG 1008 (1249)
Q Consensus 931 i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg--~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG 1008 (1249)
++.+.......+.-..|..+ +.++-+.+..| .|+.+|+.+++.......+. .-.--.++...+ +.....=.+|
T Consensus 36 v~~ypHd~~aFTQGL~~~~~---g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d-~l~qLTWk~~ 110 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDD---GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD-KLYQLTWKEG 110 (264)
T ss_dssp EEEEE--TT-EEEEEEEEET---TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT-EEEEEESSSS
T ss_pred EEECCCCCcccCccEEecCC---CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC-EEEEEEecCC
Confidence 44444334444443337555 45666776666 79999999998876666533 223344454433 2333445688
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRT 1079 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~~ 1079 (1249)
...+||..+.+.+.++.... .=..++. ++. .++.+.+...++++|..+.+....+..
T Consensus 111 ~~f~yd~~tl~~~~~~~y~~--EGWGLt~---dg~---------~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYPG--EGWGLTS---DGK---------RLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEEEETTTTEEEEEEE-SS--S--EEEE---CSS---------CEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred eEEEEccccceEEEEEecCC--cceEEEc---CCC---------EEEEECCccceEEECCcccceEEEEEE
Confidence 99999999888888876543 3356665 454 688888899999999999888777764
No 477
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=3.1 Score=52.18 Aligned_cols=113 Identities=14% Similarity=0.054 Sum_probs=69.6
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCc
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAK 274 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~ 274 (1249)
.++.++.-+-.+.+..+--.+++-|..+++.=+..+...--|-.++.+|+=-.-.++..|+-..+.+|+.+.. |+-
T Consensus 255 aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s----d~f 330 (1051)
T KOG0168|consen 255 AIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS----DEF 330 (1051)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ccc
Confidence 5566666666666666666666666677766555543222222223333323567888888888888877643 333
Q ss_pred chhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 000861 275 IFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAY 311 (1249)
Q Consensus 275 if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~ 311 (1249)
-|.---||.|..|.+-...-+=-..+-|+..+|..+.
T Consensus 331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 4444578999998865443444566778888877654
No 478
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=12 Score=41.93 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=107.1
Q ss_pred ccccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEE
Q 000861 832 QEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFS 911 (1249)
Q Consensus 832 ~~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwd 911 (1249)
.|-...|.++.|+|+.+.|.+..+...-.||=...|+...+ ..+.+-. ..-.+.+..+|++.++--.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt----iPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT----IPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE----ecccccC-ChhHeEEecCCEEEEEehhcceEEEEE
Confidence 34445599999999999888888888888886666663321 1223322 245688888898888888899999999
Q ss_pred ccccccCCCccccccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCCCccceeeec-CC------
Q 000861 912 VDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA-IP------ 984 (1249)
Q Consensus 912 v~~~~~~~g~~~~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~-~~------ 984 (1249)
++ .....-....+ .-.+..........-.++ |.+. .+.++.+-...-+.+|.+......-.... ..
T Consensus 157 vd-~~t~~~~~~~~--~i~L~~~~k~N~GfEGlA-~d~~---~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 157 VD-ADTTVISAKVQ--KIPLGTTNKKNKGFEGLA-WDPV---DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred Ec-CCccEEeccce--EEeccccCCCCcCceeee-cCCC---CceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 88 22110000000 001111111133455677 8888 56777777777777776653321111100 00
Q ss_pred -CCCceEEEEEcC-CCCEEEEEecCCcEEEEeCCCCCcc
Q 000861 985 -EEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRFLVPV 1021 (1249)
Q Consensus 985 -h~~~I~sl~~sp-dg~~L~sgs~dG~I~lWDlr~~~~l 1021 (1249)
.-..|.++.|++ .++.|+.+.+++.+.-.|.. |.++
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~ 267 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVI 267 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecC-CCee
Confidence 123477888887 45777888888888888874 4433
No 479
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.67 E-value=2.6 Score=53.01 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=101.5
Q ss_pred CCCCCCCCCCcccccc------CCCCCccC--CCCcEEEEeccccCceeEEEEcCCCCEEEEEECCC-cEEEE-------
Q 000861 799 SSPADLTGLPSFVRTS------SIPDSGWR--PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDS-TVKVW------- 862 (1249)
Q Consensus 799 ~~~~s~~G~~~~~~s~------~~~~~~W~--~~G~lv~~L~~H~~~V~~la~spdg~~laTgs~Dg-tVkIW------- 862 (1249)
....+++|..++.... +....+|- ..|.....+.+. ..++-.|+|||..+++.++.. .+++.
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 3456788876654331 22346776 334432223333 388899999998887775431 12222
Q ss_pred ----ECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCeEEEEEccccccCCCccccccCccceeeecCC-
Q 000861 863 ----DSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK- 937 (1249)
Q Consensus 863 ----D~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~h- 937 (1249)
++..++. .. ...+.|..+.|+|||..++... +|.|.+=-+.... .|.. ... ..+.+...
T Consensus 432 l~~~~vd~ge~------~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~--~G~~-~l~---~~~~l~~~l 495 (591)
T PRK13616 432 LARTPVDASAV------AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE--DGQY-ALT---NPREVGPGL 495 (591)
T ss_pred EEEEeccCchh------hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC--CCce-eec---ccEEeeccc
Confidence 3333321 11 2245699999999999988766 5777775444211 1221 111 12223222
Q ss_pred CCcEEEEEEecCCCCCccEEEEEECCCeEEEEEcCC-CccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEE
Q 000861 938 EGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRS-NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTL 1012 (1249)
Q Consensus 938 ~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~iwDlrt-~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~l 1012 (1249)
.+.+.++. |..+ +. |+.++.++.-.+|.+.- |.....+........+.+++-+++ .++.++.+|.+.+
T Consensus 496 ~~~~~~l~-W~~~---~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 496 GDTAVSLD-WRTG---DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred CCccccce-EecC---CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 23357777 8887 44 55666665555565442 222211122223566777777763 5666677775444
No 480
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.64 E-value=26 Score=41.25 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=92.6
Q ss_pred CCCCCCCC-ccccccCCCCCccC--CCCcEEEEeccccC-ceeEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccee
Q 000861 801 PADLTGLP-SFVRTSSIPDSGWR--PRGILVAHLQEHCS-AVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 801 ~~s~~G~~-~~~~s~~~~~~~W~--~~G~lv~~L~~H~~-~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~~~ 876 (1249)
.|..+|.. +|.+..+....+|. .....+.+|+.+.+ ......++|+++.++-......|+--|+.+++. .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~------~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE------R 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E------E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE------E
Confidence 46677854 44333344445555 45566777887653 234567788888776666667888889999873 4
Q ss_pred eEeeccCCceEEEEEec--CCCEEEEEeCCCeEEEEEccccccCCCcc----cccc--CccceeeecCC----------C
Q 000861 877 LTYHLEGSRALCTMMLR--HSAQVVVGACDGIIHMFSVDHISRGLGNV----EKYS--GISDIKKKDTK----------E 938 (1249)
Q Consensus 877 ~t~~~h~~~V~sl~fsp--dg~~Lasgs~Dg~I~vwdv~~~~~~~g~~----~~~~--~~~~i~~l~~h----------~ 938 (1249)
..|......+-...|.. ++..++-.- +-+.+ .....+- ..+. ....+..++.. .
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e------~~~~d--~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIE------ISRED--WKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEE------EEGGG-------SHHHHHHHHHC---EEEEEEETTT--EEEEEEES
T ss_pred EEEECCcccccccceeeCCCccEEEEEE------Eeehh--ccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC
Confidence 56666666665566653 344433221 10111 0000000 0000 00112222222 3
Q ss_pred CcEEEEEEecCCCCCccEEEEEECC---C-eEEEEEcCC-CccceeeecCCCCCceEEEEEcCCCCEEEEEe--c---CC
Q 000861 939 GAIVTLVNYNTDNCASHMFMYSTQN---C-GIHLWDTRS-NSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGS--S---RG 1008 (1249)
Q Consensus 939 ~~V~~l~~fs~d~~~g~~L~sgs~d---g-~I~iwDlrt-~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs--~---dG 1008 (1249)
..+..+. |+|.. ...|+.|-.. . .-++|-+++ +...+.+........+.-=-|.|||..+.--+ . +.
T Consensus 188 ~wlgH~~-fsP~d--p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 188 DWLGHVQ-FSPTD--PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp S-EEEEE-EETTE--EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred ccccCcc-cCCCC--CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 3445555 78874 3366666432 1 124454443 33333332222233444456899997665422 2 33
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeEEEEEcCCCC
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~l~~~sp~g~ 1043 (1249)
.|.-+|+.++........ .+...+.. +++|+
T Consensus 265 ~i~~~d~~t~~~~~~~~~---p~~~H~~s-s~Dg~ 295 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEM---PWCSHFMS-SPDGK 295 (386)
T ss_dssp EEEEE-TTT--EEEEEEE----SEEEEEE--TTSS
T ss_pred EEEeeCCCCCCceEEEeC---CceeeeEE-cCCCC
Confidence 577788887765332111 12223333 68887
No 481
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.59 E-value=1.1 Score=47.29 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccc-hhHHHHHHHHH
Q 000861 283 MLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLN-ADVQLSQLRKS 361 (1249)
Q Consensus 283 ~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 361 (1249)
.+.-+..||+..||++.|..+..|-+-...|+.++...+. ...+|. ....+......
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~----------------------~~~sFtslS~tLa~~i~~ 101 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKG----------------------PSGSFTSLSSTLASMIME 101 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCC----------------------CCCCcccHHHHHHHHHHH
Confidence 3455668999999999999999999999999999764321 001111 12233333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhh----HhhhhcCCCHHHHHHHHhhhhhhh
Q 000861 362 IAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPI----LPAFLNDRDEQLRAVFYGQIVYVC 430 (1249)
Q Consensus 362 l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~----l~t~lnD~~w~lR~a~~~~i~~la 430 (1249)
+...+...|. ...++.+-..+++-+.-|+.-.-=.+...-||+- +..++.++|..+|.+.+-.+-.+.
T Consensus 102 lH~~Ll~~L~-~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 102 LHRGLLLALQ-AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHh-cccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3334444442 2456777778888887777766655555444443 345666677777766655544443
No 482
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.59 E-value=1.7 Score=49.93 Aligned_cols=154 Identities=18% Similarity=0.302 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHH-----------HhH
Q 000861 374 KQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVE-----------EYL 442 (1249)
Q Consensus 374 D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~-----------~~l 442 (1249)
..++.||...++.++-.| .+.++.+.+. ++.+...++..+..||..-++.|..+....|.+.++ ..+
T Consensus 38 ~~~~~vR~~al~cLGl~~-Lld~~~a~~~-l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l 115 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCC-LLDKELAKEH-LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSL 115 (298)
T ss_pred CCCHHHHHHHHHHHHHHH-HhChHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHH
Confidence 357899999999987655 5566666665 555655555559999999999999999988866553 357
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhcccccCC----CHHHHHHHHHHHHHHhhcCC--cc
Q 000861 443 LPYIEQALSDATEAVIVNALDCLAILCKSGYLRK-RILLEMIERAFPLLCYP----SQWVRRSVVTFIAASSESLG--AV 515 (1249)
Q Consensus 443 lPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~-~~~~~l~~~~~~ll~hp----n~wiR~~~~~~i~~~a~~l~--~~ 515 (1249)
+.++...|.+..+.|+..+.+.+.+|.=.|.+.. + +++...+-+..+| |..+||..--|++..+..=. ..
T Consensus 116 ~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~---~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~ 192 (298)
T PF12719_consen 116 LKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPP---KVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE 192 (298)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999999999999988888877 5 4666666666666 78999999999999885332 22
Q ss_pred ceeeEeeeccchhhhcC
Q 000861 516 DSYVFLAPVIRPFLRRQ 532 (1249)
Q Consensus 516 d~~~~l~P~l~~~l~~~ 532 (1249)
-+.....|.++.+.+.+
T Consensus 193 ~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 193 RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 22233345555554443
No 483
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=3.4 Score=53.79 Aligned_cols=200 Identities=19% Similarity=0.155 Sum_probs=122.7
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChH--HHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhc--cccccC
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDE--DRLQRVLPHVIAMLSDPAAIVRCAALETLCDILP--LVRNFP 269 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de--~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~--~v~~~~ 269 (1249)
.|-+.+...++.+. -..|..++..+..+.+-++.| ...-..||=++-+++|....-|..|..+|--++. ....
T Consensus 697 ~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d-- 773 (1176)
T KOG1248|consen 697 DIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD-- 773 (1176)
T ss_pred HHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc--
Confidence 36677777777743 334445555555555555533 3455667766666699999999999999888873 2221
Q ss_pred CCCCc---chhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhh
Q 000861 270 PSDAK---IFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQL 346 (1249)
Q Consensus 270 ~~~~~---if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1249)
..+.. +..+||.-.-..++.|. .+++++ . |..+..++..|-.+.
T Consensus 774 ~g~e~~~~~lnefl~~Isagl~gd~-~~~~as--~-Ivai~~il~e~~~~l----------------------------- 820 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLSIISAGLVGDS-TRVVAS--D-IVAITHILQEFKNIL----------------------------- 820 (1176)
T ss_pred ccccchHHHHHHHHHHHHhhhcccH-HHHHHH--H-HHHHHHHHHHHhccc-----------------------------
Confidence 11211 44444433333444543 333322 2 666666665444441
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCcccc---chhhhhhHhhhhcCCCHHHHHHHH
Q 000861 347 QRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQS---NDFLLPILPAFLNDRDEQLRAVFY 423 (1249)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~---~d~lLp~l~t~lnD~~w~lR~a~~ 423 (1249)
.++- ...++..+.-.|. -+.++|+++++.-|..+|.-|..... .+.|||-+..++.|..-.+|.++-
T Consensus 821 ----d~~~----l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 821 ----DDET----LEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred ----cHHH----HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0111 2344455555553 47899999999999999998877643 344677777778887778887777
Q ss_pred hhhhhhhcccChhhHH
Q 000861 424 GQIVYVCFFVGERSVE 439 (1249)
Q Consensus 424 ~~i~~la~~lG~~~~~ 439 (1249)
..+-.+..-.|.+.++
T Consensus 891 ~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 891 LLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHhCHHHHH
Confidence 7777777777766653
No 484
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.47 E-value=6.1 Score=46.74 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=97.8
Q ss_pred CCCEEEEEe-CCCeEEEEEccccccCCCccccccCccceeeecC---CC----CcEEEEEEecCCCCCccEEEEEE----
Q 000861 894 HSAQVVVGA-CDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDT---KE----GAIVTLVNYNTDNCASHMFMYST---- 961 (1249)
Q Consensus 894 dg~~Lasgs-~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~~---h~----~~V~~l~~fs~d~~~g~~L~sgs---- 961 (1249)
+.++|+..+ ..+.|+|+|+.. .....+ ..+.++. +. ....... .-|+ |.+++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~-dPr~P~--------l~KvIe~~ev~~k~g~s~PHT~H-clp~---G~imIS~lGd~~ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKT-DPRKPR--------LHKVIEPEEVFEKTGLSRPHTVH-CLPD---GRIMISALGDAD 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S--TTS-E--------EEEEE-HHHHHHHH-EEEEEEEE-E-SS-----EEEEEEEETT
T ss_pred cCCcEEeeeeccCcEEEEECCC-CCCCCc--------eEeeeCHHHHHhhcCCCCCceee-ecCC---ccEEEEeccCCC
Confidence 346777766 678899999982 211111 2222221 11 1111222 3455 66777642
Q ss_pred --CCCeEEEEEcCCCccceeeecCC-CCCceEEEEEcCCCCEEEEEec--------------------CCcEEEEeCCCC
Q 000861 962 --QNCGIHLWDTRSNSNTWTLKAIP-EEGYVSSLVTGPCGNWFVSGSS--------------------RGVLTLWDLRFL 1018 (1249)
Q Consensus 962 --~dg~I~iwDlrt~~~~~~l~~~~-h~~~I~sl~~spdg~~L~sgs~--------------------dG~I~lWDlr~~ 1018 (1249)
.-|.+.++|-.+.+.....+... ....-+.+-|.|..+.+++... ...+.+||+...
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred CCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 23678889988777665554321 2345677888888888887632 346999999999
Q ss_pred CcccccccCCCCC-eeEEEEEcCCCCCcccCCCCCEEEEEE-CCCeEEEEEC-CCCcee--EEEecccCCCCCCcccccc
Q 000861 1019 VPVNSWQYSQVCP-IEKMCLFVPPPNAAVSTTARPLIYVAA-GCNEVSLWNA-ENGSCH--QVLRTANYDGDTEMSDLPW 1093 (1249)
Q Consensus 1019 ~~l~s~~~~~~~~-I~~l~~~sp~g~~~~~~~~~~~l~t~s-~Dg~I~vWDl-~tg~~~--~~l~~~~~~~~~~i~~l~~ 1093 (1249)
+.++++..+..+. ...+.| ..+.. ..+=++++ -.+.|..|-- +.++-. +++.......+.. .++
T Consensus 233 ~~~Q~idLg~~g~~pLEvRf-lH~P~-------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~--~lp- 301 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRF-LHDPD-------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW--ILP- 301 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE--SSTT---------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS------
T ss_pred cEeeEEecCCCCCceEEEEe-cCCCC-------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc--ccc-
Confidence 9999988775543 456777 43332 12333333 3455555533 334321 1222111000000 000
Q ss_pred cccCCCCCCCCCcccccccccccccccc-CCCCCCCCCeEEEeecCCC-e-EEEEeCCCcEEEEeCCCCCccEEE
Q 000861 1094 AFARPSSRSNPKTDLRRNVNQKYRVDEL-NEPPPRLLGIRSLLPLPGG-D-LLTGGTDLKIRRWDHCSPGRSYCI 1165 (1249)
Q Consensus 1094 sp~~p~~~~~~s~dg~~~~~~~~~~~~~-~~~~~~~~~V~sl~~spdg-~-L~tgs~Dg~IriWDl~~~~~~~~l 1165 (1249)
++ ........-|+.+..|.|. + .++.=.+|.||.||+.++...+.+
T Consensus 302 --------------------------~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 302 --------------------------EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp --------------------------GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred --------------------------ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 00 0000111257888899988 4 455667999999999998876644
No 485
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.43 E-value=28 Score=44.85 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=108.0
Q ss_pred cccCceeEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc-eeeEeeccCCceEEEEEecC----CCEEEEEe---CC
Q 000861 833 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFR-SRLTYHLEGSRALCTMMLRH----SAQVVVGA---CD 904 (1249)
Q Consensus 833 ~H~~~V~~la~spdg~~laTgs~DgtVkIWD~~~~~~~~~~~-~~~t~~~h~~~V~sl~fspd----g~~Lasgs---~D 904 (1249)
|-..-..|+.+-++| ++..||.-|.=.+-.+.+.....++- ...++. .-++|.+++.... ...+++++ .|
T Consensus 304 ge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kd 381 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKD 381 (1096)
T ss_pred CCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCC
Confidence 334445566666666 67778877766666665543221111 111222 2347888877652 24666654 48
Q ss_pred CeEEEEEccccccCCCccccccCccceeeec----CCCCc------------------EE--EEEEecCCCCCccEEEEE
Q 000861 905 GIIHMFSVDHISRGLGNVEKYSGISDIKKKD----TKEGA------------------IV--TLVNYNTDNCASHMFMYS 960 (1249)
Q Consensus 905 g~I~vwdv~~~~~~~g~~~~~~~~~~i~~l~----~h~~~------------------V~--~l~~fs~d~~~g~~L~sg 960 (1249)
|++++.+-...-...+. ....|.+-+..++ ..... +- ....|+.+ .+.++++
T Consensus 382 gSLRiiRngi~I~e~A~-i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~---~~Tif~S 457 (1096)
T KOG1897|consen 382 GSLRIIRNGIGIDELAS-IDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTD---EQTIFCS 457 (1096)
T ss_pred CcEEEEecccccceeeE-eecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEecccccccc---CceEEEE
Confidence 99999875411000000 1112211111111 00000 00 00013333 2234433
Q ss_pred ECC---------CeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccCCCCC
Q 000861 961 TQN---------CGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCP 1031 (1249)
Q Consensus 961 s~d---------g~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~~~~~ 1031 (1249)
+.. ..|+++|-.. ....+. ..+.++....+-+...++.++.++.+...++..+......+......
T Consensus 458 ~i~g~~lvQvTs~~iRl~ss~~--~~~~W~---~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~e 532 (1096)
T KOG1897|consen 458 TINGNQLVQVTSNSIRLVSSAG--LRSEWR---PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYE 532 (1096)
T ss_pred ccCCceEEEEecccEEEEcchh--hhhccc---CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecce
Confidence 332 2355555431 111222 13445555555666678888888888888876655333323334567
Q ss_pred eeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEE
Q 000861 1032 IEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLW 1066 (1249)
Q Consensus 1032 I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vW 1066 (1249)
|.|+.+ +|-|. ......++++|.++..+.+.
T Consensus 533 vaCLDi-sp~~d---~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 533 VACLDI-SPLGD---APNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred eEEEec-ccCCC---CCCcceEEEEEeecceEEEE
Confidence 899999 88765 11234578888877665443
No 486
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=6.2 Score=48.70 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=95.4
Q ss_pred cccchhhHHHhHhhhhcCCcccccccccccchhhhccccCCCCCCCCCCCCCCCCCCcccc-hhhHHHHHhhhccCCCch
Q 000861 132 ESSGELLQSISDAFRKNGHPFLKKITMNNLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGI-VLIASLLCSCVRNVKLPH 210 (1249)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~i~s~~r~~~~~~ 210 (1249)
....+.+.++|.++.+.--.--+..-...|.-|+...|.- ...+|.. ..+.--+..-+.+ +-+.
T Consensus 77 d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~--------------~eidd~vfn~l~e~l~~Rl~D-rep~ 141 (892)
T KOG2025|consen 77 DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN--------------AEIDDDVFNKLNEKLLIRLKD-REPN 141 (892)
T ss_pred CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc--------------cccCHHHHHHHHHHHHHHHhc-cCch
Confidence 3345588888988855544433444445565565555311 1334443 3466667788889 9999
Q ss_pred hHHHHHHHHHHHhh-cCChHHHHHhhHHHHHHhc-CCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCC
Q 000861 211 YRRAAILLLKSSSL-FIDDEDRLQRVLPHVIAML-SDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLP 288 (1249)
Q Consensus 211 ~r~~a~~ll~~l~~-~~~de~~l~~ilP~~~~ll-~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~ 288 (1249)
+|+.|+-.|-.+-. -.++++. ++-.+..++ .|++++||.+|+.++. + ++. -+|++-.-+
T Consensus 142 VRiqAv~aLsrlQ~d~~dee~~---v~n~l~~liqnDpS~EVRRaaLsnI~-----v-----dns------Tlp~IveRa 202 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDPKDEECP---VVNLLKDLIQNDPSDEVRRAALSNIS-----V-----DNS------TLPCIVERA 202 (892)
T ss_pred HHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCCcHHHHHHHHHhhc-----c-----Ccc------cchhHHHHh
Confidence 99999988777764 3334443 344445555 4899999999988765 1 111 467777778
Q ss_pred CCCch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 000861 289 DDPEE-SVRICYASNIAKLALTAYGFLVHS 317 (1249)
Q Consensus 289 ~D~~~-~VR~~~A~~l~~LA~~a~rf~~~~ 317 (1249)
.|-+. .=|++|+.|++.+ =.||+.+.
T Consensus 203 rDV~~anRrlvY~r~lpki---d~r~lsi~ 229 (892)
T KOG2025|consen 203 RDVSGANRRLVYERCLPKI---DLRSLSID 229 (892)
T ss_pred hhhhHHHHHHHHHHhhhhh---hhhhhhHH
Confidence 88764 4467889999988 33455443
No 487
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.21 E-value=1.5 Score=55.82 Aligned_cols=285 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCC--hHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFID--DEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSD 272 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~--de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~ 272 (1249)
++++++.++.. ......+.++..|.+|+-+-. ++..-.-++|-+..|++-+...++-.|++ +|-.++-.+..-
T Consensus 291 iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLr----lL~NLSfd~~~R 365 (708)
T PF05804_consen 291 IVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALR----LLFNLSFDPELR 365 (708)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH----HHHHhCcCHHHH
Q ss_pred CcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchh
Q 000861 273 AKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNAD 352 (1249)
Q Consensus 273 ~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1249)
..+...=++|.|..|..|++ .|...-..|..|+..-..-...+.
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~---------------------------------- 409 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY---------------------------------- 409 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHH---HHHHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhh
Q 000861 353 VQLSQLRKSIAEVVQELVMGPKQTPSIRR---ALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYV 429 (1249)
Q Consensus 353 ~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~---all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~l 429 (1249)
..-.|.+.+++. .-+++.|.. +++-|+..--..- ........|+.|+..+....-.+=+.++..|..-
T Consensus 410 -------TdcIp~L~~~Ll-~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h 480 (708)
T PF05804_consen 410 -------TDCIPQLMQMLL-ENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQH 480 (708)
T ss_pred -------cchHHHHHHHHH-hCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhc
Q ss_pred hcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHH--HHHHHHhcccccCC--CHHHHHHHHHHH
Q 000861 430 CFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRIL--LEMIERAFPLLCYP--SQWVRRSVVTFI 505 (1249)
Q Consensus 430 a~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~--~~l~~~~~~ll~hp--n~wiR~~~~~~i 505 (1249)
-. --+..|.+||-|+.-..-...++.....++..|.+|.-.++-|...+ +.++|.+..++.-. .-=+-..++.++
T Consensus 481 ~~-~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 481 DG-PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred Cc-hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Q ss_pred HHHhhcCCccceee--Eeeeccchhhh
Q 000861 506 AASSESLGAVDSYV--FLAPVIRPFLR 530 (1249)
Q Consensus 506 ~~~a~~l~~~d~~~--~l~P~l~~~l~ 530 (1249)
.+++..-..+-.-+ .+++.+-..|+
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~ 586 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLN 586 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHH
No 488
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.17 E-value=17 Score=40.34 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=58.5
Q ss_pred ecCCCCCccEEEEEEC-----CCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCCEEEEEec---------------
Q 000861 947 YNTDNCASHMFMYSTQ-----NCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS--------------- 1006 (1249)
Q Consensus 947 fs~d~~~g~~L~sgs~-----dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~~L~sgs~--------------- 1006 (1249)
|++| |.+|+..-+ .|.|-+||.+.+ ....-+.+.|.-....+.|.+||+.++.+..
T Consensus 121 fs~d---G~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 121 FSPD---GRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred cCCC---CcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 8999 666655433 378999999843 2222233456666778899999999887632
Q ss_pred ---CCcEEEEeCCCCCcccccccC---CCCCeeEEEEEcCCCC
Q 000861 1007 ---RGVLTLWDLRFLVPVNSWQYS---QVCPIEKMCLFVPPPN 1043 (1249)
Q Consensus 1007 ---dG~I~lWDlr~~~~l~s~~~~---~~~~I~~l~~~sp~g~ 1043 (1249)
.-.+.+.|-.+|..+.+...+ +...|..+.. .++|.
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~-g~dgt 238 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI-GRDGT 238 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeee-CCCCc
Confidence 123555665666666554433 3346777777 66665
No 489
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.14 E-value=8.4 Score=48.58 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=86.8
Q ss_pred CceeEEEEcCCCCEEEEEE------CCCcEEEEECCCCccccccceeeEeeccCCceEEEEEecCCCEEEEEeCCCe-EE
Q 000861 836 SAVNEIAISHDHSFFVSAS------DDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGACDGI-IH 908 (1249)
Q Consensus 836 ~~V~~la~spdg~~laTgs------~DgtVkIWD~~~~~~~~~~~~~~t~~~h~~~V~sl~fspdg~~Lasgs~Dg~-I~ 908 (1249)
..+.+.+++|||+.++..- .|+.-.||=...+.. ......+ ...+.-.|+|+|+.+++.+.... ++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----ceeeecC--CCCCCceECCCCCceEEEecCcceEE
Confidence 4678999999999776654 344445554332221 1111222 23788999999888887754322 22
Q ss_pred EEEccccccCCCccc--cccCccceeeecCCCCcEEEEEEecCCCCCccEEEEEECCCeEEE---EEcCCCccceee---
Q 000861 909 MFSVDHISRGLGNVE--KYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHL---WDTRSNSNTWTL--- 980 (1249)
Q Consensus 909 vwdv~~~~~~~g~~~--~~~~~~~i~~l~~h~~~V~~l~~fs~d~~~g~~L~sgs~dg~I~i---wDlrt~~~~~~l--- 980 (1249)
+.+-. ..+++. ...+. ..+. ...+.|..+. |+|| |..++... +|.|++ -....|. ..+
T Consensus 423 v~~~~----~~gql~~~~vd~g-e~~~--~~~g~Issl~-wSpD---G~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~ 488 (591)
T PRK13616 423 VIRDP----ATGQLARTPVDAS-AVAS--RVPGPISELQ-LSRD---GVRAAMII-GGKVYLAVVEQTEDGQ--YALTNP 488 (591)
T ss_pred EeccC----CCceEEEEeccCc-hhhh--ccCCCcCeEE-ECCC---CCEEEEEE-CCEEEEEEEEeCCCCc--eeeccc
Confidence 22211 011110 00010 0111 2345689998 9999 66777665 577777 4433443 122
Q ss_pred -ec-CCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCC
Q 000861 981 -KA-IPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLR 1016 (1249)
Q Consensus 981 -~~-~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr 1016 (1249)
.. ..-...+.++.|..++.. ++++.++...+|.+.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred EEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 11 122334688999999874 566666655566543
No 490
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=2.3 Score=48.16 Aligned_cols=232 Identities=15% Similarity=0.140 Sum_probs=146.1
Q ss_pred hHHHHHhhhccCCCchhHHHHHHHHHHHhhcCC--hHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCC
Q 000861 195 IASLLCSCVRNVKLPHYRRAAILLLKSSSLFID--DEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSD 272 (1249)
Q Consensus 195 ~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~--de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~ 272 (1249)
+++-+...+++ -++.+|+.|.--|..++..-. -|+...--+|.++.|++|+..-.-.+.+-++-.+- +.|.|
T Consensus 252 lv~~Lv~Lmd~-~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis-----ihplN 325 (550)
T KOG4224|consen 252 LVPALVDLMDD-GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS-----IHPLN 325 (550)
T ss_pred hHHHHHHHHhC-CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc-----cccCc
Confidence 67778888999 889999988877777764221 23333445899999999886655555555543221 33444
Q ss_pred Ccchhhc--hhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccc
Q 000861 273 AKIFPEY--ILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLN 350 (1249)
Q Consensus 273 ~~if~ey--ilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1249)
+..+.|. +-|.+.-|---.++...+.....|-.||....+-... ++.
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~---i~e---------------------------- 374 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV---IRE---------------------------- 374 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH---Hhh----------------------------
Confidence 4444443 5566666655555667777777777777654422111 000
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhch--hhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhh
Q 000861 351 ADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG--NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVY 428 (1249)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~--~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~ 428 (1249)
..-.|.+.+|+ .|..-+|+..+-.-+. .+...+.....+--|+|.||.++-|.+..||.--++.+..
T Consensus 375 ---------sgAi~kl~eL~--lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 375 ---------SGAIPKLIELL--LDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred ---------cCchHHHHHHH--hcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 11234455555 3777788877665544 4455555556677799999999999999999877777766
Q ss_pred hhcccCh--------hhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCC
Q 000861 429 VCFFVGE--------RSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYL 474 (1249)
Q Consensus 429 la~~lG~--------~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~ 474 (1249)
++.-+.. ..-.+-|--.+...|.-.+-.++.-+.-.+.+|.+.+-+
T Consensus 444 lss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 444 LSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred hhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 6643321 111144555666677777777777777777777765444
No 491
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=8.3 Score=49.91 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=93.6
Q ss_pred hhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCCCchHHH
Q 000861 401 DFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDAT-EAVIVNALDCLAILCKSGYLRKRIL 479 (1249)
Q Consensus 401 d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~-e~V~~~~l~~l~~l~~~gl~~~~~~ 479 (1249)
+.++-|+..-++|+|-.||=+++..+..|+.-+.++-.++.|-..+. .+.=-| +.+-..+.-.|.+|+..|++-...+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 47889999999999999999999999999999998887777777766 443333 5666688899999999999988866
Q ss_pred HHHHHHhcccccCC--------CHHHHHHHHHHHHHHhhcCCccceee
Q 000861 480 LEMIERAFPLLCYP--------SQWVRRSVVTFIAASSESLGAVDSYV 519 (1249)
Q Consensus 480 ~~l~~~~~~ll~hp--------n~wiR~~~~~~i~~~a~~l~~~d~~~ 519 (1249)
-+++|-++.-+... ..-||.|+..++-++++..++.++.-
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p 466 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP 466 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH
Confidence 66666555222211 44599999999999999998886543
No 492
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.04 E-value=2.2 Score=49.04 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=110.5
Q ss_pred cCChHHHHHhhHHHHH-HhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHH
Q 000861 225 FIDDEDRLQRVLPHVI-AMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNI 303 (1249)
Q Consensus 225 ~~~de~~l~~ilP~~~-~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l 303 (1249)
.+++...+..++.-++ -.++-+++.||..|+++|.-++-.= ...-.++ ++.+...++.....||.....+|
T Consensus 17 ~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-------~~~a~~~-l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 17 SLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-------KELAKEH-LPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred cCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-------hHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444444444333 4566778899999999998766532 2233444 34444333444889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000861 304 AKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRAL 383 (1249)
Q Consensus 304 ~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~al 383 (1249)
-+|...-+ .... +.... . .-......+..++...+. +.+++|+..+
T Consensus 89 ~Dll~~~g-~~~~----------~~~~~------------~---------~~~~~~~~l~~~l~~~l~--~~~~~~~~~a 134 (298)
T PF12719_consen 89 FDLLLTHG-IDIF----------DSESD------------N---------DESVDSKSLLKILTKFLD--SENPELQAIA 134 (298)
T ss_pred HHHHHHcC-chhc----------cchhc------------c---------CccchHhHHHHHHHHHHh--cCCHHHHHHH
Confidence 88876533 0000 00000 0 000112567777888774 5588999999
Q ss_pred HHhchhhhhhcCccccchhhhhhH-hhhhcC---CCHHHHHHHHhhhhhhhcccC--hhhHHHhHHHHHHHHccCCcH
Q 000861 384 LQDIGNLCSFFGQRQSNDFLLPIL-PAFLND---RDEQLRAVFYGQIVYVCFFVG--ERSVEEYLLPYIEQALSDATE 455 (1249)
Q Consensus 384 l~~i~~l~~f~G~~~~~d~lLp~l-~t~lnD---~~w~lR~a~~~~i~~la~~lG--~~~~~~~llPll~q~L~D~~e 455 (1249)
++.+.+|--. |+-.....+|..| ..|.|- .+.++|..+-=.++-.|..-- ++.+++-.+|.+..+..-+++
T Consensus 135 ~EGl~KLlL~-~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 135 VEGLCKLLLS-GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHHHHhc-CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8877665422 3322213566555 455553 478999876666665553222 467778888888887666543
No 493
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=3 Score=49.68 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=64.9
Q ss_pred EEEEEECCCeEEEEEcCCCccceeeecCCCCCceEEEEEcCCCC-------EEEEEecCCcEEEEeCCCCCc-ccccccC
Q 000861 956 MFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGN-------WFVSGSSRGVLTLWDLRFLVP-VNSWQYS 1027 (1249)
Q Consensus 956 ~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~sl~~spdg~-------~L~sgs~dG~I~lWDlr~~~~-l~s~~~~ 1027 (1249)
++..+.....++-.|+..|+.+...+. +.. |+-+.+.|+.. .-++|-++..|.-||.|-... .-.|..+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 445566667899999999999887765 222 66667777542 234577888999999983322 2222222
Q ss_pred C----CCCeeEEEEEcCCCCCcccCCCCCEEEEEECCCeEEEEEC
Q 000861 1028 Q----VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNA 1068 (1249)
Q Consensus 1028 ~----~~~I~~l~~~sp~g~~~~~~~~~~~l~t~s~Dg~I~vWDl 1068 (1249)
| .....|.+- ..+| +|++|+.+|.|++||-
T Consensus 425 kqy~~k~nFsc~aT-T~sG----------~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 425 KQYSTKNNFSCFAT-TESG----------YIVVGSLKGDIRLYDR 458 (644)
T ss_pred cccccccccceeee-cCCc----------eEEEeecCCcEEeehh
Confidence 2 122334333 3333 7999999999999996
No 494
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.86 E-value=35 Score=40.96 Aligned_cols=41 Identities=12% Similarity=-0.141 Sum_probs=33.9
Q ss_pred CCeEEEeecCCC-eEEEEeCCCcEEEEeCCCCCccEEEeCCC
Q 000861 1129 LGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPN 1169 (1249)
Q Consensus 1129 ~~V~sl~~spdg-~L~tgs~Dg~IriWDl~~~~~~~~l~g~~ 1169 (1249)
..+.+++.+|++ +.++...=|+|.++|+.++..++...|..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 367889999999 66666667999999999999888887654
No 495
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.78 E-value=14 Score=47.94 Aligned_cols=109 Identities=10% Similarity=0.018 Sum_probs=67.8
Q ss_pred CCeEEEEEcCCCccceeeecCC-------CCC--------ce-EEEEEcCCCCEEEEEec------------------CC
Q 000861 963 NCGIHLWDTRSNSNTWTLKAIP-------EEG--------YV-SSLVTGPCGNWFVSGSS------------------RG 1008 (1249)
Q Consensus 963 dg~I~iwDlrt~~~~~~l~~~~-------h~~--------~I-~sl~~spdg~~L~sgs~------------------dG 1008 (1249)
+|.|+.+|.++|+..|.+.... ..+ .+ ..++++++...++.++. .+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 6899999999999999885310 011 11 34566666555555432 24
Q ss_pred cEEEEeCCCCCcccccccCCCCCeeE---------EEEEc-CCCCCcccCCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 000861 1009 VLTLWDLRFLVPVNSWQYSQVCPIEK---------MCLFV-PPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLR 1078 (1249)
Q Consensus 1009 ~I~lWDlr~~~~l~s~~~~~~~~I~~---------l~~~s-p~g~~~~~~~~~~~l~t~s~Dg~I~vWDl~tg~~~~~l~ 1078 (1249)
.|.-.|.++|+....++.-|. .+.. +.+ . .+|+ ..+.++.++.+|.+.++|.++|+.+...+
T Consensus 415 slvALD~~TGk~~W~~Q~~~h-D~WD~D~~~~p~L~d~-~~~~G~------~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHH-DLWDMDVPAQPSLVDL-PDADGT------TVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCceEEEecccCC-ccccccccCCceEEee-ecCCCc------EeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 566677778887766654221 1111 111 1 1221 23578999999999999999999876654
Q ss_pred c
Q 000861 1079 T 1079 (1249)
Q Consensus 1079 ~ 1079 (1249)
.
T Consensus 487 e 487 (764)
T TIGR03074 487 E 487 (764)
T ss_pred e
Confidence 3
No 496
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=2.3 Score=54.73 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=88.1
Q ss_pred EeeccCC-ceEEEEEecCCCEEEE--EeCCCeEEEEEccccccCCCccccccCcccee---eecCCCCcEEEEEEecCCC
Q 000861 878 TYHLEGS-RALCTMMLRHSAQVVV--GACDGIIHMFSVDHISRGLGNVEKYSGISDIK---KKDTKEGAIVTLVNYNTDN 951 (1249)
Q Consensus 878 t~~~h~~-~V~sl~fspdg~~Las--gs~Dg~I~vwdv~~~~~~~g~~~~~~~~~~i~---~l~~h~~~V~~l~~fs~d~ 951 (1249)
++..|.. .|..+...+|+...++ .+.+-.|..||+..... ..|....+++ ..........++. |+|.-
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~-----s~~~~~~pl~~s~ts~ek~vf~~~~~-wnP~v 167 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSE-----SRYETTVPLKNSATSFEKPVFQLKNV-WNPLV 167 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhh-----hhhhhccccccccchhcccccccccc-ccCCc
Confidence 4444433 4555555566654433 33444788899873221 1111111111 1111233455666 88875
Q ss_pred CCccEEEEEECCCeEEEEEcCCCcc-ceeeecCCCCCceEEEEEcCCCCEEEEEecCCcEEEEeCCCCCcccccccC---
Q 000861 952 CASHMFMYSTQNCGIHLWDTRSNSN-TWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYS--- 1027 (1249)
Q Consensus 952 ~~g~~L~sgs~dg~I~iwDlrt~~~-~~~l~~~~h~~~I~sl~~spdg~~L~sgs~dG~I~lWDlr~~~~l~s~~~~--- 1027 (1249)
+. ..+.+..|+.|.+.-+..... ...+ +-....+|++|+|.|..++.|-..|++.-|-.. .+....+..+
T Consensus 168 p~--n~av~l~dlsl~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 168 PL--NSAVDLSDLSLRVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE 241 (1405)
T ss_pred cc--hhhhhccccchhhhhhhhhhhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC
Confidence 44 677778888888877653322 2222 235678999999999999999999999998763 3322222211
Q ss_pred CCCCeeEEEEEcCCC
Q 000861 1028 QVCPIEKMCLFVPPP 1042 (1249)
Q Consensus 1028 ~~~~I~~l~~~sp~g 1042 (1249)
....|.+++| ....
T Consensus 242 e~yrvl~v~W-l~t~ 255 (1405)
T KOG3630|consen 242 ENYRVLSVTW-LSTQ 255 (1405)
T ss_pred CCcceeEEEE-ecce
Confidence 2357899999 4433
No 497
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.37 E-value=5.1 Score=42.62 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=59.7
Q ss_pred HHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 000861 231 RLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTA 310 (1249)
Q Consensus 231 ~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~a 310 (1249)
..+|.++.++.++-++++.||.+|++-+..++.. .-+-|-.-+|.|-.|..|++..+|...-..+..|.+--
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--------GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQ--------GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--------CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999988863 22455668999999999999999987767766665443
Q ss_pred H
Q 000861 311 Y 311 (1249)
Q Consensus 311 ~ 311 (1249)
.
T Consensus 77 ~ 77 (187)
T PF12830_consen 77 E 77 (187)
T ss_pred H
Confidence 3
No 498
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=2.9 Score=51.92 Aligned_cols=217 Identities=13% Similarity=0.187 Sum_probs=141.9
Q ss_pred hcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCCcchhhchhhhccCCCCCCchhHHHHHHHHH
Q 000861 224 LFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNI 303 (1249)
Q Consensus 224 ~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~~if~eyilP~l~~l~~D~~~~VR~~~A~~l 303 (1249)
.+.+|+.+-+.+ ..||+-..+.-++-|++.|..++..=.+ ..-+||.+-+.+.-.+..||-.+=-.|
T Consensus 29 ~f~sd~~~~~dL----~~lLdSnkd~~KleAmKRIia~iA~G~d---------vS~~Fp~VVKNVaskn~EVKkLVyvYL 95 (968)
T KOG1060|consen 29 TFLSDNIRHDDL----KQLLDSNKDSLKLEAMKRIIALIAKGKD---------VSLLFPAVVKNVASKNIEVKKLVYVYL 95 (968)
T ss_pred eeecCCCChHHH----HHHHhccccHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 345555554444 4567777777777888777666554322 123566665555444444554332222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000861 304 AKLALTAYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRAL 383 (1249)
Q Consensus 304 ~~LA~~a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~al 383 (1249)
. ||.|-.+.+ ..-+ ...|+.-| +|.++.+|..+
T Consensus 96 l-------rYAEeqpdL------------------------ALLS--------------IntfQk~L--~DpN~LiRasA 128 (968)
T KOG1060|consen 96 L-------RYAEEQPDL------------------------ALLS--------------INTFQKAL--KDPNQLIRASA 128 (968)
T ss_pred H-------HHhhcCCCc------------------------eeee--------------HHHHHhhh--cCCcHHHHHHH
Confidence 2 233321110 0001 12355556 58999999999
Q ss_pred HHhchhhhhhcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHH
Q 000861 384 LQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALD 463 (1249)
Q Consensus 384 l~~i~~l~~f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~ 463 (1249)
|.-++.+=. ...+-++|=.+.....|...+||..-+-+|+.+-. ++++.- ..|+-++..+|.|....|+-.|+-
T Consensus 129 LRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e~I~~LLaD~splVvgsAv~ 202 (968)
T KOG1060|consen 129 LRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEEVIKKLLADRSPLVVGSAVM 202 (968)
T ss_pred HHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHHHHHHHhcCCCCcchhHHHH
Confidence 987654321 12344566677789999999999999999999875 565543 489999999999999999999999
Q ss_pred HHHHHHhc--CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhc
Q 000861 464 CLAILCKS--GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSES 511 (1249)
Q Consensus 464 ~l~~l~~~--gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~ 511 (1249)
.+...|-. .|+.|.. .++..++.+-+.|=..-+|..+..-|+.
T Consensus 203 AF~evCPerldLIHkny-----rklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 203 AFEEVCPERLDLIHKNY-----RKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred HHHHhchhHHHHhhHHH-----HHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 99999875 5555542 2444555555999888888888877754
No 499
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.23 E-value=15 Score=49.39 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhchhhhhhcCccccchhhhhhHhhhhcC---------------------C-
Q 000861 357 QLRKSIAEVVQELVMGPKQTPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLND---------------------R- 414 (1249)
Q Consensus 357 ~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~~l~~f~G~~~~~d~lLp~l~t~lnD---------------------~- 414 (1249)
.+.+.+..++.-++ ++..-++|+-++.+++.+|.-=..=.+...++-.+.+-++| .
T Consensus 1221 ~~~e~v~~lL~~f~--k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1221 TLKEKVLILLMYFS--KDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred hHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 44556665555555 35568999999999999996432222333333333333333 1
Q ss_pred --------CHHHH--HHHHhhhhhhhcccChh----hHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCCCchHHHH
Q 000861 415 --------DEQLR--AVFYGQIVYVCFFVGER----SVEEYLLPYIEQALSDATEAVIVNALDCLAILCKSGYLRKRILL 480 (1249)
Q Consensus 415 --------~w~lR--~a~~~~i~~la~~lG~~----~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~gl~~~~~~~ 480 (1249)
+|..= ..-..-+.+++.-.|.. .+.+..++.+++..-|.+-.||..|++-++.....||..+..
T Consensus 1299 ~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~-- 1376 (1692)
T KOG1020|consen 1299 KKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVH-- 1376 (1692)
T ss_pred HHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccc--
Confidence 22110 01122233444444433 467888999999999999999999999999999999999984
Q ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHhhcC
Q 000861 481 EMIERAFPLLCYPSQWVRRSVVTFIAASSESL 512 (1249)
Q Consensus 481 ~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l 512 (1249)
-+|.++.|-.+|..-+|.-|..++..+-+..
T Consensus 1377 -cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY 1407 (1692)
T KOG1020|consen 1377 -CVPTLIALETDPSQAIRHVADELLKEIDEKY 1407 (1692)
T ss_pred -hhhhheeecCChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998887653
No 500
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=3.6 Score=51.39 Aligned_cols=336 Identities=16% Similarity=0.183 Sum_probs=176.6
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHHHhhcCChHHHHHhhHHHHHHhcCCCChhHHHHHHHHHHHHhccccccCCCCC
Q 000861 194 LIASLLCSCVRNVKLPHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNFPPSDA 273 (1249)
Q Consensus 194 ~~l~~i~s~~r~~~~~~~r~~a~~ll~~l~~~~~de~~l~~ilP~~~~ll~D~~~~VR~~A~~~l~~~l~~v~~~~~~~~ 273 (1249)
.+..-+..|+++ ..+-+|..|+-....+...=.+-..-.-+++-+..|+.|+.|.|-+.|+.+|..+.+.=......+
T Consensus 121 y~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~- 198 (734)
T KOG1061|consen 121 YLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE- 198 (734)
T ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc-
Confidence 467778999999 999999999988888766555555556678888999999999999999999998876543211111
Q ss_pred cchhhchhhhccCCCCCCchhHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhcccccccCCCCCCCCCCCcchhhh
Q 000861 274 KIFPEYILPMLSMLPDDPEESVRICYASNIAKLALT-------AYGFLVHSIRLSEAGVLDKLSAPHKSPSSSNETSVQL 346 (1249)
Q Consensus 274 ~if~eyilP~l~~l~~D~~~~VR~~~A~~l~~LA~~-------a~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1249)
+-++.+--.+..+..=.+| =++.+ +..|+.. |..+.+..... +..++++- -=+...--+
T Consensus 199 -l~~~~~~~lL~al~ec~EW-~qi~I---L~~l~~y~p~d~~ea~~i~~r~~p~-----Lqh~n~av----vlsavKv~l 264 (734)
T KOG1061|consen 199 -LNPQLINKLLEALNECTEW-GQIFI---LDCLAEYVPKDSREAEDICERLTPR-----LQHANSAV----VLSAVKVIL 264 (734)
T ss_pred -ccHHHHHHHHHHHHHhhhh-hHHHH---HHHHHhcCCCCchhHHHHHHHhhhh-----hccCCcce----EeehHHHHH
Confidence 1111111111111111111 11111 1111111 11111111100 00000000 000000000
Q ss_pred hccch-hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhch---------------------------------hhhh
Q 000861 347 QRLNA-DVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG---------------------------------NLCS 392 (1249)
Q Consensus 347 ~~~~~-~~~~~~~~~~l~~~~~~Ll~~~D~~~~Vr~all~~i~---------------------------------~l~~ 392 (1249)
....+ ....+.+.+.+.+.+.+|+ |..+++--..|.||. -++.
T Consensus 265 ~~~~~~~~~~~~~~~K~~~pl~tll---s~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~ 341 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFKKVAPPLVTLL---SSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIE 341 (734)
T ss_pred HHHHHHHHHHHHHHHHhcccceeee---cccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence 00111 0111233344444444444 334444444444432 1222
Q ss_pred hcCccccchhhhhhHhhhhcCCCHHHHHHHHhhhhhhhcccChhhHHHhHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-
Q 000861 393 FFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQALSDATEAVIVNALDCLAILCKS- 471 (1249)
Q Consensus 393 f~G~~~~~d~lLp~l~t~lnD~~w~lR~a~~~~i~~la~~lG~~~~~~~llPll~q~L~D~~e~V~~~~l~~l~~l~~~- 471 (1249)
.--.+.+.+ +|+-+..|+.+.|...=..-+.+|..+|..+-.. +-++..|+++|.=.+.-|+..++.-+..+...
T Consensus 342 la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 342 LANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred HhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 222222333 7777888888887765555678899998887766 56788888888878888888888877776553
Q ss_pred -CCCchHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHhhcCCccceeeEeeeccchh---hhcCCCCcCCHHHHHhc--
Q 000861 472 -GYLRKRILLEMIERAFPLLCYPSQWVRRSVVTFIAASSESLGAVDSYVFLAPVIRPF---LRRQPASLASVKALLSC-- 545 (1249)
Q Consensus 472 -gl~~~~~~~~l~~~~~~ll~hpn~wiR~~~~~~i~~~a~~l~~~d~~~~l~P~l~~~---l~~~v~~i~~~~~ll~~-- 545 (1249)
+-. ..+...+....+-+..|- .|.+.+=++..-+..++.++ -+++.| ++++...| ..+.|-..
T Consensus 418 P~~~--~~vv~~l~~~~~sl~epe--ak~amiWilg~y~~~i~~a~------elL~~f~en~~dE~~~V-ql~LLta~ik 486 (734)
T KOG1061|consen 418 PNKY--ESVVAILCENLDSLQEPE--AKAALIWILGEYAERIENAL------ELLESFLENFKDETAEV-QLELLTAAIK 486 (734)
T ss_pred CCch--hhhhhhhcccccccCChH--HHHHHHHHHhhhhhccCcHH------HHHHHHHhhcccchHHH-HHHHHHHHHH
Confidence 221 223334444444455453 78888777777777776653 223333 23344444 33322222
Q ss_pred --cCCC-CcHHHHHHHHHhhc
Q 000861 546 --LKPP-VSREVFYQVLENAR 563 (1249)
Q Consensus 546 --l~~P-lsR~vf~~~~~~~~ 563 (1249)
++.| -.......++.||.
T Consensus 487 ~Fl~~p~~tq~~l~~vL~~~~ 507 (734)
T KOG1061|consen 487 LFLKKPTETQELLQGVLPLAT 507 (734)
T ss_pred HHhcCCccHHHHHHHHHhhhh
Confidence 3344 55666667777763
Done!