Query 000861
Match_columns 1249
No_of_seqs 872 out of 4315
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:12:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000861.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_628-632//hhsearch_pdb/000861hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 1.0 1 1 357.0 37.1 372 788-1249 143-608 (611)
2 1nr0_A Actin interacting prote 1.0 1 1 352.9 30.5 398 799-1249 108-564 (611)
3 1vyh_C Platelet-activating fac 1.0 1 1 342.8 41.7 306 818-1249 91-408 (410)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 336.5 40.7 415 799-1249 803-1246(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 331.0 39.4 384 800-1249 186-577 (577)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 329.1 39.7 384 800-1249 145-536 (577)
7 3iz6_a 40S ribosomal protein R 1.0 1 1 328.4 36.4 319 817-1249 47-372 (380)
8 3gre_A Serine/threonine-protei 1.0 1 1 327.4 38.5 394 801-1249 34-437 (437)
9 1got_B GT-beta; complex (GTP-b 1.0 1 1 323.8 44.4 296 824-1249 44-340 (340)
10 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 322.1 36.3 404 799-1249 662-1155(1249)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=357.05 Aligned_cols=372 Identities=14% Similarity=0.124 Sum_probs=241.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 556655555898888989987-31233689998647-9994899913324755699993899879999789969999789
Q 000861 788 AKGSSINVEDASSPADLTGLP-SFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR 865 (1249)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~G~~-~~~~s~~~~~~~W~-p~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~ 865 (1249)
+.+|...+. .+.|++++.. +++.+.+....+|+ .+++++.++.+|.+.|++++|+|++++|++|+.|++|++||..
T Consensus 143 l~gh~~~v~--~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 143 LTGQARAMN--SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp CCCCSSCEE--EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ECCCCCCCE--EEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 547889836--999889998299999289809999799975766520025716999997999989999899919998899
Q ss_pred CCCCCCCCCEEEEEE-------CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCC--------------
Q ss_conf 876432100016864-------16973389999329999999958992999984445667896433--------------
Q 000861 866 KLEKDISFRSRLTYH-------LEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEK-------------- 924 (1249)
Q Consensus 866 ~~~~~~~~~~~~t~~-------~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~~~-------------- 924 (1249)
+++. ...+. +|.+.|.+++|+|++++|++++.|++|++|++.. .+....+..
T Consensus 221 ~g~~------~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 221 DGTK------TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp TCCE------EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEEC
T ss_pred CCCE------EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCEEEEECCCCCCCCEEEEEEEC
T ss_conf 9828------6651366432356678789999979999999990898099996888-70134404788766406899973
Q ss_pred -----------------CCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCC
Q ss_conf -----------------357421044038999679999814889884399999889949999857996320651379887
Q 000861 925 -----------------YSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEG 987 (1249)
Q Consensus 925 -----------------~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~ 987 (1249)
.......+.+.+|.+.|.+++ |+|+ ++.+++++.|+.|++||+.++.....+. ..|..
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~-~spd---g~~l~s~s~D~~v~~Wd~~~~~~~~~~~-~~h~~ 368 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS-SSAD---GKTLFSADAEGHINSWDISTGISNRVFP-DVHAT 368 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE-ECTT---SSEEEEEETTSCEEEEETTTCCEEECSS-CSCSS
T ss_pred CCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEE-EECC---CCEEEEEECCCCEEEEECCCCCEEEECC-CCCCC
T ss_conf 88799995899689996889974469837888889999-9189---9989999589849999788792563216-67765
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC---------------------------------C------CCCC
Q ss_conf 549999927999999994599199995999983100---------------------------------0------3578
Q 000861 988 YVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNS---------------------------------W------QYSQ 1028 (1249)
Q Consensus 988 ~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s---------------------------------~------~~~~ 1028 (1249)
.|.++++++++ .+++++.|+.+++|+......... | ...+
T Consensus 369 ~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 369 MITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp CEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred EEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEEC
T ss_conf 07899987899-69999848966895468854356521200148997079980799699999676399984894346406
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78856999975999976668899889999879909998879992459876134799987665555556998888998533
Q 000861 1029 VCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDL 1108 (1249)
Q Consensus 1029 ~~~I~~l~~~sp~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg 1108 (1249)
...+.+++| +|++. ++++++.|+.|++||+.++....... .. +...+..+.|+| ++
T Consensus 448 ~~~v~~va~-spdg~---------~lasgs~D~~v~lwd~~~~~~~~~~~--~~-h~~~v~~v~fsp-----------dg 503 (611)
T 1nr0_A 448 SYNSSCVAL-SNDKQ---------FVAVGGQDSKVHVYKLSGASVSEVKT--IV-HPAEITSVAFSN-----------NG 503 (611)
T ss_dssp SSCEEEEEE-CTTSC---------EEEEEETTSEEEEEEEETTEEEEEEE--EE-CSSCEEEEEECT-----------TS
T ss_pred CCCCEEEEE-ECCCC---------EEEEECCCCEEEEEECCCCCEEEEEC--CC-CCCCEEEEEECC-----------CC
T ss_conf 889549999-28998---------99996899739999945992224101--57-788607999989-----------99
Q ss_pred CCCCC----CCCCCCCCCC---------CCCCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCC
Q ss_conf 33346----5432345689---------99988990797115999-2999708982999939999860797099988888
Q 000861 1109 RRNVN----QKYRVDELNE---------PPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVG 1174 (1249)
Q Consensus 1109 ~~~~~----~~~~~~~~~~---------~~~~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~ 1174 (1249)
..++. ...++|+... ...|...|.+++|+||| +|++|+.|++|++|++..+.....
T Consensus 504 ~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~---------- 573 (611)
T 1nr0_A 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI---------- 573 (611)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE----------
T ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC----------
T ss_conf 9899994899899988577872232102640466425899899899799997997299997887555632----------
Q ss_pred CCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 986300025775399551545776520247789864102666774-332038874632997899981897089759
Q 000861 1175 NDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCH-RDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1175 ~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~H-~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
..+.+| .+.|++++ |+|++. |+|++.||+|++|+
T Consensus 574 ---------------------------------------~~~~~h~~~~v~~v~-fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 574 ---------------------------------------IIKGAHAMSSVNSVI-WLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp ---------------------------------------EETTSSTTSCEEEEE-EEETTE-EEEEETTSCEEEEE
T ss_pred ---------------------------------------HHHCCCCCCCEEEEE-ECCCCE-EEEECCCCCEEEEE
T ss_conf ---------------------------------------644467656711899-858997-99952887789984
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=352.88 Aligned_cols=398 Identities=13% Similarity=0.099 Sum_probs=221.5
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 888898998731233689----99864799948999133247556999938998-7999978996999978987643210
Q 000861 799 SSPADLTGLPSFVRTSSI----PDSGWRPRGILVAHLQEHCSAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISF 873 (1249)
Q Consensus 799 ~~~~~~~G~~~~~~s~~~----~~~~W~p~G~li~~L~~H~~~V~~ia~spdg~-~laTgs~Dg~VkIWD~~~~~~~~~~ 873 (1249)
.+.|+++|..+++.+.+. ...+|+ .|..+..+.+|.+.|++++|+|++. .+++|+.|++|++||...++
T Consensus 108 ~v~fs~dg~~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~----- 181 (611)
T 1nr0_A 108 DISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----- 181 (611)
T ss_dssp EEEECTTSCEEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEE-CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCE-----
T ss_conf 9998999997999989977366999963-8997632547889836999889998299999289809999799975-----
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE-------CCCCCCEEEEEE
Q ss_conf 0016864169733899993299999999589929999844456678964333574210440-------389996799998
Q 000861 874 RSRLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKK-------DTKEGAIVTLVN 946 (1249)
Q Consensus 874 ~~~~t~~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~-------~~h~~~V~~i~~ 946 (1249)
...++.+|...|.+++|+|++++|++++.|++|++|++. .++. +..+ .+|.+.|.+++
T Consensus 182 -~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-----~g~~--------~~~~~~~~~~~~~h~~~V~~v~- 246 (611)
T 1nr0_A 182 -FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-----DGTK--------TGVFEDDSLKNVAHSGSVFGLT- 246 (611)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCE--------EEECBCTTSSSCSSSSCEEEEE-
T ss_pred -EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC-----CCCE--------EEEECCCCCCCCCCCCCEEEEE-
T ss_conf -766520025716999997999989999899919998899-----9828--------6651366432356678789999-
Q ss_pred ECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 1488988439999988994999985799632065137-988754999992799999999459919999599998310003
Q 000861 947 YNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI-PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1025 (1249)
Q Consensus 947 fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~-~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~ 1025 (1249)
|+|+ +..+++++.|+.|++||+++++....+... .+.....++.| ++..+++++.||.+++||...+.+...+
T Consensus 247 ~spd---g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~- 320 (611)
T 1nr0_A 247 WSPD---GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVR- 320 (611)
T ss_dssp ECTT---SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEE-
T ss_pred ECCC---CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEE-
T ss_conf 9799---999999908980999968887013440478876640689997--3887999958996899968899744698-
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 5787885699997599997666889988999987990999887999245987613479998766555555699-------
Q 000861 1026 YSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARP------- 1098 (1249)
Q Consensus 1026 ~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~------- 1098 (1249)
.+|...|.+++| +|++. ++++++.|+.|++||+.++.+...+. ..+...+..+.|++...
T Consensus 321 ~gh~~~v~~l~~-spdg~---------~l~s~s~D~~v~~Wd~~~~~~~~~~~---~~h~~~v~~~~~s~~~~l~s~s~d 387 (611)
T 1nr0_A 321 YGHNKAITALSS-SADGK---------TLFSADAEGHINSWDISTGISNRVFP---DVHATMITGIKTTSKGDLFTVSWD 387 (611)
T ss_dssp CCCSSCEEEEEE-CTTSS---------EEEEEETTSCEEEEETTTCCEEECSS---CSCSSCEEEEEECTTSCEEEEETT
T ss_pred CCCCCCEEEEEE-ECCCC---------EEEEEECCCCEEEEECCCCCEEEECC---CCCCCEEEEEEECCCCCEEEEECC
T ss_conf 378888899999-18999---------89999589849999788792563216---677650789998789969999848
Q ss_pred --------------------------CCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCCCEEEEEECCCC-EEEEEE
Q ss_conf --------------------------888899853333346---543234568--999988990797115999-299970
Q 000861 1099 --------------------------SSRSNPKTDLRRNVN---QKYRVDELN--EPPPRLLGIRSLLPLPGG-DLLTGG 1146 (1249)
Q Consensus 1099 --------------------------~~~~~~s~dg~~~~~---~~~~~~~~~--~~~~~~~~V~sl~~spdg-~Litgs 1146 (1249)
.....+++++..... ...++++.. ....+...+.+++|+||| ++++|+
T Consensus 388 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs 467 (611)
T 1nr0_A 388 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG 467 (611)
T ss_dssp TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 96689546885435652120014899707998079969999967639998489434640688954999928998999968
Q ss_pred CCCCEEEEECCCCCCCEE-EECCCCCCCCCCCCEEECCCCCEEEEECCCCCCC-CCHHHHHHHHHHHCC---C--CCCCC
Q ss_conf 898299993999986079-7099988888986300025775399551545776-520247789864102---6--66774
Q 000861 1147 TDLKIRRWDHCSPGRSYC-ICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPL-TSKLTAKAVLAAAAT---D--SAGCH 1219 (1249)
Q Consensus 1147 ~Dg~IriWDl~~~~~~~~-i~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~-~~~~~~~~~~~~~~~---~--~~~~H 1219 (1249)
.|+.|++||+........ ..++. ..+..+.|++++...+. ..+.+.+.|...... . ...+|
T Consensus 468 ~D~~v~lwd~~~~~~~~~~~~~h~------------~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 468 QDSKVHVYKLSGASVSEVKTIVHP------------AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECS------------SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CCCEEEEEECCCCCEEEEECCCCC------------CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEEC
T ss_conf 997399999459922241015778------------86079999899998999948998999885778722321026404
Q ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 332038874632997899981897089759
Q 000861 1220 RDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1220 ~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
.+.|++++ |+|++++|+||+.||+|++|+
T Consensus 536 ~~~V~~v~-fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVS-WSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEE-ECTTSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEE-ECCCCCEEEEEECCCCEEEEE
T ss_conf 66425899-899899799997997299997
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=342.84 Aligned_cols=306 Identities=18% Similarity=0.277 Sum_probs=266.8
Q ss_pred CCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 98647999489991332475569999389987999978996999978987643210001686416973389999329999
Q 000861 818 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 897 (1249)
Q Consensus 818 ~~~W~p~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t~~~h~~~V~~i~fspdg~~ 897 (1249)
...|.|.......+.+|.++|++++|+|++.++++|+.||+|++||+.+++ ...++.+|.+.|.+++|+|++++
T Consensus 91 ~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~------~~~~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 91 PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD------FERTLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp -CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC------CCEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EEEEEECCCCCEEEEEECCCCCE
T ss_conf 011234897307661667768999996999989999389859999899993------77888166786878998599999
Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99995899299998444566789643335742104403899967999981488988439999988994999985799632
Q 000861 898 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 977 (1249)
Q Consensus 898 Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~ 977 (1249)
+++|+.||+|++|++. .+ ..++.+.+|.+.|.++. |+|+ +..+++++.|+.|++||++++.+.
T Consensus 165 l~sgs~D~~i~iwd~~-----~~--------~~~~~~~~h~~~V~~v~-~~p~---~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQ-----GF--------ECIRTMHGHDHNVSSVS-IMPN---GDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp EEEEETTSCCCEEETT-----SS--------CEEECCCCCSSCEEEEE-ECSS---SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCCEEEEEECC-----CC--------CEEEEECCCCCCEEEEE-EECC---CCEEEEEECCCEEEEEECCCCCEE
T ss_conf 9999189819999589-----98--------26699828999778999-9679---999999968996999989999489
Q ss_pred EEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC-----------
Q ss_conf 065137988754999992799999999459919999599998310003578788569999759999766-----------
Q 000861 978 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAV----------- 1046 (1249)
Q Consensus 978 ~~l~~~~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~~~~~~~I~~l~~~sp~g~~~~----------- 1046 (1249)
..+. +|...|.++.+++++.++++|+.||.|++||++.+.+...+. +|...|.+++| +|++....
T Consensus 228 ~~~~--~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 228 KTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISW-APESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEE--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE-CCSCGGGGGGGCCSCC---
T ss_pred EEEE--CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEEE-CCCCCCCCHHHHCCCCCCC
T ss_conf 9992--788628999998999999999189909999898974366733-78745899998-5865543101212555556
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899889999879909998879992459876134799987665555556998888998533333465432345689999
Q 000861 1047 STTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPP 1126 (1249)
Q Consensus 1047 ~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~ 1126 (1249)
....+.++++++.|+.|++||+.++.+...+.++..
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-------------------------------------------- 339 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-------------------------------------------- 339 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------------------------------------
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--------------------------------------------
T ss_conf 678888999993898499998899966999977888--------------------------------------------
Q ss_pred CCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 88990797115999-29997089829999399998607970999888889863000257753995515457765202477
Q 000861 1127 RLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAK 1205 (1249)
Q Consensus 1127 ~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~ 1205 (1249)
.|++++|+|++ ++++|+.|+.|++||+.+++....+.
T Consensus 340 ---~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--------------------------------------- 377 (410)
T 1vyh_C 340 ---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------------------------------------- 377 (410)
T ss_dssp ---CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE---------------------------------------
T ss_pred ---CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC---------------------------------------
T ss_conf ---58999994998999999597929999899990689984---------------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 89864102666774332038874632997899981897089759
Q 000861 1206 AVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1206 ~~~~~~~~~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
+|.+.|++++ |+|++.+|+||+.||+|++|+
T Consensus 378 ------------~h~~~v~~l~-~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 378 ------------AHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ------------CCSSCEEEEE-ECSSSSCEEEEETTSEEEEEC
T ss_pred ------------CCCCCEEEEE-ECCCCCEEEEEECCCCEEEEE
T ss_conf ------------7778689999-828999999992799489973
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=336.49 Aligned_cols=415 Identities=12% Similarity=0.076 Sum_probs=305.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE
Q ss_conf 888898998731233689998647-9994899913-32475569999389987999978996999978987643210001
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQ-EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSR 876 (1249)
Q Consensus 799 ~~~~~~~G~~~~~~s~~~~~~~W~-p~G~li~~L~-~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~ 876 (1249)
...++++|..++..+ +....+|+ .++..+..+. +|.+.|.+++|+|++.++++++.||.|++||..++. ..
T Consensus 803 ~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~------~~ 875 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL------KV 875 (1249)
T ss_dssp CCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE------EE
T ss_pred EEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EE
T ss_conf 999978998899975-89599999568972357747877760799982788889999479869999867895------65
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC-C---------------CCCCCCCEE--------
Q ss_conf 6864169733899993299999999589929999844456678964-3---------------335742104--------
Q 000861 877 LTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV-E---------------KYSGISDIK-------- 932 (1249)
Q Consensus 877 ~t~~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~-~---------------~~~~~~~i~-------- 932 (1249)
..+.+|.+.|.+++|+|++..+++++.||.+++|++.......... . .......+.
T Consensus 876 ~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf 32278766568999989999899995897289887466520102113310368975998689981377624898447650
Q ss_pred EECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 40389996799998148898843999998899499998579963206513798875499999279999999945991999
Q 000861 933 KKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTL 1012 (1249)
Q Consensus 933 ~~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~si~~spdg~~Lvtgs~dG~I~i 1012 (1249)
....+...+.+++ |+|+ +..+++++.+|.|.+||+.+++....+ .+|.+.|++++|+|++.++++++.||.|++
T Consensus 956 ~~~~~~~~i~~~~-~sp~---g~~l~~g~~~g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A 956 IDYLPEAQVSCCC-LSPH---LEYVAFGDEDGAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029 (1249)
T ss_dssp EEEECCSCEEEEE-ECTT---SSEEEEEETTSCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEECSSSBEEE
T ss_pred EEECCCCCEEEEE-ECCC---CCEEEEECCCCCEEEEECCCCCEEEEC--CCCCCCEEEEEECCCCCEEEEECCCCEEEE
T ss_conf 8972567278999-9589---977999869998899975787234430--367771689999899998999869987999
Q ss_pred EECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 95999983100035787885699997599997666889988999987990999887999245987613479998766555
Q 000861 1013 WDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLP 1092 (1249)
Q Consensus 1013 WDlr~~~~i~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~ 1092 (1249)
||+.++...... .|...+.++.+ +|++ .+++++.|+.+++||+.++++...+..+. ..+..+.
T Consensus 1030 wd~~~~~~~~~~--~~~~~v~~~~~-~~~~----------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~~~~ 1092 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQ--AHQETVKDFRL-LQDS----------RLLSWSFDGTVKVWNVITGRIERDFTCHQ----GTVLSCA 1092 (1249)
T ss_dssp EETTTTEEECCB--CCSSCEEEEEE-CSSS----------EEEEEESSSEEEEEETTTTCCCEEEECCS----SCCCCEE
T ss_pred EECCCCCEEEEE--CCCCCEEEEEE-CCCC----------CEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEE
T ss_conf 987999668985--27873899999-0899----------58999788968998889886558874668----8489999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCC
Q ss_conf 555699888899853333346543234568999988990797115999-2999708982999939999860797099988
Q 000861 1093 WAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLK 1171 (1249)
Q Consensus 1093 ~sp~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~ 1171 (1249)
|+|+.... ++++.|+.................+|...|++++|+|++ ++++|+.||.|++||+.+++....+......
T Consensus 1093 ~s~d~~~l-~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1093 ISSDATKF-SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECSSSSSC-EEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred ECCCCCEE-EEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 98999989-99849994899878985001255068776799999799998999828997999988999457885144444
Q ss_pred CCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 888986300025775399551545776520247789864102--666774332038874632997899981897089759
Q 000861 1172 GVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAAT--DSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1172 ~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
.........+..+.|++++....... +....|....+. ..+.+|.+.|++++ |++++++|++++.||.|++|+
T Consensus 1172 ---~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~~-~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1172 ---EGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIH-VSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp --------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCCE-ECSSSCCEEEECTTCCEEEEC
T ss_pred ---CCCCCCCCEEEEEEECCCCCEEEECC-CEEEEEECCCCCEEEEEECCCCCCCEEE-ECCCCCEEEEECCCCEEEEEE
T ss_conf ---21025674289999978999899779-8599989888950046400477532799-978987799966881799976
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=330.99 Aligned_cols=384 Identities=17% Similarity=0.258 Sum_probs=221.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 88898998731233689998647999489991332475569999389987999978996999978987643210001686
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY 879 (1249)
Q Consensus 800 ~~~~~~G~~~~~~s~~~~~~~W~p~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t~ 879 (1249)
..++++|..+++.+.+....+|+.+++++..+.+|.+.|.+++|+|+++++++++.|+.|++||.... ....+
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~-------~~~~~ 258 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTL 258 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-------EEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-------EEEEE
T ss_conf 54169977899985999899994999689999468898899999799999999918998999959997-------99998
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEE
Q ss_conf 41697338999932999999995899299998444566789643335742104403899967999981488988439999
Q 000861 880 HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 880 ~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~s 959 (1249)
.+|...|.+++|+|+++.+++++.|+.+++|+.. ++ .++.+.+|.+.+.+++ |+|+ +..+++
T Consensus 259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~------~~--------~~~~~~~h~~~v~~~~-~~~~---~~~l~t 320 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN------GQ--------LLQTLTGHSSSVWGVA-FSPD---GQTIAS 320 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT------SC--------EEEEECCCSSCEEEEE-ECTT---SSEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC------CC--------EEEEEECCCCCEEEEE-ECCC---CCEEEE
T ss_conf 0688987999996899999999599979999489------95--------8999706889769999-9999---999999
Q ss_pred EECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 98899499998579963206513798875499999279999999945991999959999831000357878856999975
Q 000861 960 STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFV 1039 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~~~~~~~I~~l~~~s 1039 (1249)
++.|+.|++||..... ...+ .+|...+.+++|+|++.++++|+.+|.+++||. .+..+..+. +|...|.+++| +
T Consensus 321 ~~~d~~i~~w~~~~~~-~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~-s 394 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQH-LQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAF-S 394 (577)
T ss_dssp EETTSCEEEEETTSCE-EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEE-C
T ss_pred EECCCEEEEEECCCCE-EEEE--ECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEC-CCCCCEEEEEE-C
T ss_conf 9699959999699972-5787--478897799999899999999969998999908-997899852-78897489999-8
Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997666889988999987990999887999245987613479998766555555699888899853333346543234
Q 000861 1040 PPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1040 p~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~~~~ 1119 (1249)
|++. ++++++.|+.|++||. +++....+..+. ..+..+.|+|+... .+....|+ .+++|
T Consensus 395 ~dg~---------~l~~~~~d~~v~~~~~-~~~~~~~~~~~~----~~v~~~~~s~d~~~-l~~~~~d~------~v~~w 453 (577)
T 2ymu_A 395 PDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHS----SSVWGVAFSPDDQT-IASASDDK------TVKLW 453 (577)
T ss_dssp TTSS---------CEEEEETTSEEEEECT-TCCEEEEEECCS----SCEEEEEECTTSSE-EEEEETTS------EEEEE
T ss_pred CCCC---------EEEEEECCCEEEEEEC-CCCEEEEECCCC----CCEEEEEECCCCCE-EEEECCCC------EEEEE
T ss_conf 9999---------9999949998999969-997898962889----97579999899999-99993999------89999
Q ss_pred CC-----CCCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECC
Q ss_conf 56-----8999988990797115999-29997089829999399998607970999888889863000257753995515
Q 000861 1120 EL-----NEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQER 1193 (1249)
Q Consensus 1120 ~~-----~~~~~~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e~ 1193 (1249)
+. ....+|...|++++|+|++ ++++++.|+.|++||. +++....+.++. ..+..+.|++++
T Consensus 454 ~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~------------~~v~~l~~s~dg 520 (577)
T 2ymu_A 454 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS------------SSVRGVAFSPDG 520 (577)
T ss_dssp ETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS------------SCEEEEEECTTS
T ss_pred ECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECCC------------CCEEEEEECCCC
T ss_conf 7999889997278997789999699999999919897999939-997899986799------------998999991899
Q ss_pred CCCCC-CCHHHHHHHHHHH-CCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45776-5202477898641-02666774332038874632997899981897089759
Q 000861 1194 KRQPL-TSKLTAKAVLAAA-ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1194 ~~~~~-~~~~~~~~~~~~~-~~~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
...+. ..+...+.|.... ....+.+|.+.|++++ |+|++++|+|++.||+|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~-fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEE-ECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEC
T ss_conf 999999896999999699978989718888878999-968999999990899999969
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=329.09 Aligned_cols=384 Identities=17% Similarity=0.244 Sum_probs=288.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 88898998731233689998647999489991332475569999389987999978996999978987643210001686
Q 000861 800 SPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY 879 (1249)
Q Consensus 800 ~~~~~~G~~~~~~s~~~~~~~W~p~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t~ 879 (1249)
..+++++........+....+|...+........|...|.++.++|++.++++++.||.|++||... + ....+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~-~------~~~~~ 217 (577)
T 2ymu_A 145 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q------LLQTL 217 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-C------EEEEE
T ss_pred EEEECCCCCCEECCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC-C------EEEEE
T ss_conf 5420377632002555310000000000000268776356654169977899985999899994999-6------89999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEE
Q ss_conf 41697338999932999999995899299998444566789643335742104403899967999981488988439999
Q 000861 880 HLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMY 959 (1249)
Q Consensus 880 ~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~s 959 (1249)
.+|...|.+++|+|++..+++++.|+.|++|+.. ++ .+..+..|...+.++. |+|+ +..+++
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~------~~--------~~~~~~~~~~~v~~v~-~~~d---~~~l~~ 279 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQ--------LLQTLTGHSSSVNGVA-FRPD---GQTIAS 279 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT------SC--------EEEEECCCSSCEEEEE-ECTT---SSEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC------CC--------EEEEEECCCCCEEEEE-ECCC---CCEEEE
T ss_conf 4688988999997999999999189989999599------97--------9999806889879999-9689---999999
Q ss_pred EECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 98899499998579963206513798875499999279999999945991999959999831000357878856999975
Q 000861 960 STQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFV 1039 (1249)
Q Consensus 960 gs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~~~~~~~I~~l~~~s 1039 (1249)
++.++.|++||.. ++....+ .+|.+.|.+++|+|++..+++++.||.+++||... ..+..+. +|...+.++++ +
T Consensus 280 ~~~d~~i~~w~~~-~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~-~~~~~v~~~~~-s 353 (577)
T 2ymu_A 280 ASDDKTVKLWNRN-GQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLT-GHSSSVWGVAF-S 353 (577)
T ss_dssp EETTSCEEEEETT-SCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEE-C
T ss_pred EECCCEEEEEECC-CCEEEEE--ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEE-CCCCCEEEEEE-C
T ss_conf 9599979999489-9589997--06889769999999999999996999599996999-7257874-78897799999-8
Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997666889988999987990999887999245987613479998766555555699888899853333346543234
Q 000861 1040 PPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVD 1119 (1249)
Q Consensus 1040 p~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~~~~ 1119 (1249)
|++. ++++++.|+.+++||. ++++...+..+ ...+..+.|+|+... .+....++ .+++|
T Consensus 354 ~~g~---------~l~~~~~dg~v~~~~~-~~~~~~~~~~~----~~~v~~~~~s~dg~~-l~~~~~d~------~v~~~ 412 (577)
T 2ymu_A 354 PDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGH----SSSVRGVAFSPDGQT-IASASDDK------TVKLW 412 (577)
T ss_dssp TTSS---------EEEEEETTSEEEEEET-TCCEEEEEECC----SSCEEEEEECTTSSC-EEEEETTS------EEEEE
T ss_pred CCCC---------EEEEEECCCEEEEECC-CCCEEEEECCC----CCCEEEEEECCCCCE-EEEEECCC------EEEEE
T ss_conf 9999---------9999969998999908-99789985278----897489999899999-99994999------89999
Q ss_pred CC-----CCCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECC
Q ss_conf 56-----8999988990797115999-29997089829999399998607970999888889863000257753995515
Q 000861 1120 EL-----NEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQER 1193 (1249)
Q Consensus 1120 ~~-----~~~~~~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e~ 1193 (1249)
+. ....+|...|.+++|+|++ ++++++.|+.|++||. +++....+.++. ..+..+.|++++
T Consensus 413 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~------------~~v~~~~~spd~ 479 (577)
T 2ymu_A 413 NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS------------SSVRGVAFSPDG 479 (577)
T ss_dssp CTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS------------SCEEEEEECTTS
T ss_pred ECCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCC------------CCEEEEEECCCC
T ss_conf 6999789896288997579999899999999939998999979-998899972789------------977899996999
Q ss_pred CCCCC-CCHHHHHHHHHHH-CCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45776-5202477898641-02666774332038874632997899981897089759
Q 000861 1194 KRQPL-TSKLTAKAVLAAA-ATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1194 ~~~~~-~~~~~~~~~~~~~-~~~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
...+. ..+...+.|.... ....+.+|.+.|++++ |+|++++|++++.||.|++||
T Consensus 480 ~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE-ECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCEEEEECCCCCEEEEEECCCCCEEEEE-ECCCCCEEEEEECCCEEEEEE
T ss_conf 999999198979999399978999867999989999-918999999998969999996
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=328.42 Aligned_cols=319 Identities=19% Similarity=0.272 Sum_probs=264.6
Q ss_pred CCCCCCC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 9986479-994899913324755699993899879999789969999789876432100016864169733899993299
Q 000861 817 PDSGWRP-RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 895 (1249)
Q Consensus 817 ~~~~W~p-~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t~~~h~~~V~~i~fspdg 895 (1249)
....|++ +..+..+|.+|.+.|++++|+|++++|+||+.||+|++||..+++ ...++..|...|.+++|+|++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ------KTHAIKLHCPWVMECAFAPNG 120 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE------EEEEEECCCTTCCCCEECTTS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC------CCEEEECCCCCEEEEEECCCC
T ss_conf 56555652139820000453477899996899989999189809998788886------014885599878999998999
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 99999958992999984445667896433357421044038999679999814889884399999889949999857996
Q 000861 896 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNS 975 (1249)
Q Consensus 896 ~~Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~ 975 (1249)
+++++|+.|+.+++|++.......+ .....+.+.+|.+.+.++. |.|+. +..+++++.|+.|++||+++++
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~------~~~~~~~~~gh~~~v~~~~-~~~~~--~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDG------NMPVSRVLTGHKGYASSCQ-YVPDQ--ETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCC------SSTTCCBCCCCSSCCCCCB-CCSSS--SSCEEEECTTSCEEEECTTTCC
T ss_pred CEEEEEECCCCEEEEECCCCCCCCC------CCCCEEECCCCCCCEEEEE-EECCC--CCEEEEECCCCCEEEEECCCCC
T ss_conf 9899954798589998977755567------7331264068975468999-96489--9789997799819999867795
Q ss_pred CCEEEEC---CCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCC-CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 3206513---79887549999927-999999994599199995999-983100035787885699997599997666889
Q 000861 976 NTWTLKA---IPEEGYVSSLVTGP-CGNWFVSGSSRGVLTLWDLRF-LVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTA 1050 (1249)
Q Consensus 976 ~~~~l~~---~~h~~~I~si~~sp-dg~~Lvtgs~dG~I~iWDlr~-~~~i~s~~~~~~~~I~~l~~~sp~g~~~~~~~~ 1050 (1249)
....+.. .+|...|.++++++ +++++++|+.||.|++||++. ...+..+. +|...|.+++| +|++.
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~-~p~~~------- 262 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKF-FPDGQ------- 262 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEE-CTTSS-------
T ss_pred EEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEC-CCCCCEEEEEE-ECCCC-------
T ss_conf 7899605667887567699992069999899997898699997888973469988-74887579999-16999-------
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899998799099988799924598761347999876655555569988889985333334654323456899998899
Q 000861 1051 RPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLG 1130 (1249)
Q Consensus 1051 ~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~ 1130 (1249)
++++++.|+.|++||++++.+...+....... ..+...
T Consensus 263 --~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~ 300 (380)
T 3iz6_a 263 --RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN----------------------------------------DNELPI 300 (380)
T ss_dssp --EEEEECSSSCEEEEETTTTEEEEEECCCCSSS----------------------------------------CCSSCS
T ss_pred --EEEEECCCCEEEEEECCCCCEEEEECCCCCCC----------------------------------------CCCCCC
T ss_conf --69998389969999888996889861565556----------------------------------------655686
Q ss_pred EEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 0797115999-299970898299993999986079709998888898630002577539955154577652024778986
Q 000861 1131 IRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLA 1209 (1249)
Q Consensus 1131 V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~ 1209 (1249)
+.+++|+|+| ++++|+.||.|++||+..++....+...
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----------------------------------------- 339 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----------------------------------------- 339 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-----------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC-----------------------------------------
T ss_conf 389998899998999979997999988778157897023-----------------------------------------
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 4102666774332038874632997899981897089759
Q 000861 1210 AAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1210 ~~~~~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
..+|.+.|++++ |+|++.+|+||+.||.|++|+
T Consensus 340 ------~~~h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 340 ------QNSHEGRISCLG-LSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp ------CSSCCCCCCEEE-ECSSSSEEEEECTTSCEEEEE
T ss_pred ------CCCCCCCEEEEE-ECCCCCEEEEEECCCCEEEEE
T ss_conf ------677778457999-899999899960899889995
No 8
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=327.36 Aligned_cols=394 Identities=19% Similarity=0.271 Sum_probs=283.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEE
Q ss_conf 8898998731233689998647999489991-33247556999938-998799997899699997898764321000168
Q 000861 801 PADLTGLPSFVRTSSIPDSGWRPRGILVAHL-QEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLT 878 (1249)
Q Consensus 801 ~~~~~G~~~~~~s~~~~~~~W~p~G~li~~L-~~H~~~V~~ia~sp-dg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t 878 (1249)
+|+++|...+. ...|+++|+++.++ .+|.+.|++++|+| ++++|++|+.||+|++||+.+.+....++....
T Consensus 34 ~f~~~~~~~~~------~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 34 EFGPIQEIVRS------PNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GGCCCCCCCCC------CCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred HCCCCCCCCCC------CCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 12875323566------654356444875523679985279998789998899966996399968765445752131343
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEC--C--CCCCEEEEEE-ECCCCCC
Q ss_conf 641697338999932999999995899299998444566789643335742104403--8--9996799998-1488988
Q 000861 879 YHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKD--T--KEGAIVTLVN-YNTDNCA 953 (1249)
Q Consensus 879 ~~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~--~--h~~~V~~i~~-fs~d~~~ 953 (1249)
+ .|.+.|.+++|+|+++.+++++.||.|++|+++... .++..+......++.+. . +...+.++.. ++++
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--- 181 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ--QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE--- 181 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE--ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS---
T ss_pred C-CCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCC--CCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCC---
T ss_conf 0-689977899995899889999089979999923455--7721431353406789746766566716889997599---
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf 43999998899499998579963206513798875499999279999999945991999959999831000357878856
Q 000861 954 SHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE 1033 (1249)
Q Consensus 954 g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~~~~~~~I~ 1033 (1249)
+..+++++.||.|++||+++++....+....|.+.|++++|+|++.++++|+.||.|++||++++.++..+..+|..+|.
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEE
T ss_conf 98899995898499996778826479745887895489998899889999868984999976776378888518998667
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997599997666889988999987990999887999245987613479998766555555699888899853333346
Q 000861 1034 KMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVN 1113 (1249)
Q Consensus 1034 ~l~~~sp~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~ 1113 (1249)
++++ +|... ..+.++++++.|+.|++||++++++...+..+.. .+....|+| ++..+..
T Consensus 262 ~~~~-~~~~s-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-----------~~~~l~~ 320 (437)
T 3gre_A 262 HVEV-CQFYG-----KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE----QPSMEHFLP-----------IEKGLEE 320 (437)
T ss_dssp EEEE-CTTTC-----TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS----CCCGGGGSC-----------BCSSGGG
T ss_pred EEEE-CCCCC-----CCCCEEEEECCCCCEEEEECCCCCEEEEEECCCC----CCCCCEECC-----------CCCCCCC
T ss_conf 8886-13558-----8854999974898189998478808899985888----975110041-----------2044310
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEEC
Q ss_conf 543234568999988990797115999-2999708982999939999860797099988888986300025775399551
Q 000861 1114 QKYRVDELNEPPPRLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQE 1192 (1249)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~V~sl~~spdg-~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e 1192 (1249)
.. .....|...|++++|+ ++ ++++|+.|+.|++||+.+++....+.++... ...+..........+...
T Consensus 321 ~~------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 390 (437)
T 3gre_A 321 LN------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRF---SDVFIPTQVTANLTMLLR 390 (437)
T ss_dssp CC------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--C---CCEEEEEEEETTEEEEEE
T ss_pred CE------ECCCCCCCCEEEEEEC-CCEEEEECCCCCEEEEEECCCCCCCEEEECCCCC---CCEEEEEEEECCEEEEEE
T ss_conf 00------0244467833799987-9669996389974999979995105698446656---760788776054589997
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC--CCEEEEEECCCEEEECC
Q ss_conf 5457765202477898641026667743320388746329--97899981897089759
Q 000861 1193 RKRQPLTSKLTAKAVLAAAATDSAGCHRDSILSLGSVKLN--QRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~d~I~sla~~s~d--g~~LvSgs~DG~IkIWd 1249 (1249)
. .+... .........|.+.|++++ |.++ +.+|+||+.||.|+||+
T Consensus 391 ~------~~~~~-----~~~~~~~~~h~~~I~~i~-~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K------MKRTS-----THSVDDSLYHHDIINSIS-TCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E------CC------------------CCCEEEEE-EEESSSSEEEEEEETTSCEEEEC
T ss_pred E------CCCCC-----CCCCCCCCCCCCCEEEEE-EECCCCCEEEEEECCCCEEEEEC
T ss_conf 4------55354-----465676556653046672-30158825999984786688729
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=323.81 Aligned_cols=296 Identities=21% Similarity=0.321 Sum_probs=257.3
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 99489991332475569999389987999978996999978987643210001686416973389999329999999958
Q 000861 824 RGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQVVVGAC 903 (1249)
Q Consensus 824 ~G~li~~L~~H~~~V~~ia~spdg~~laTgs~Dg~VkIWD~~~~~~~~~~~~~~t~~~h~~~V~~i~fspdg~~Lasas~ 903 (1249)
..+...+|.+|.+.|++++|+|+++++++|+.||+|++||..++. ....+..|...|.+++|+|+++++++++.
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN------KVHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC------EEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC------CCEEEECCCCCEEEEEECCCCCEEEEEEC
T ss_conf 121100104877836899988999999998188968999899987------43376038861889999999999999808
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECC
Q ss_conf 99299998444566789643335742104403899967999981488988439999988994999985799632065137
Q 000861 904 DGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI 983 (1249)
Q Consensus 904 Dg~I~iwdi~~~~~~~g~~~~~~~~~~i~~~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~ 983 (1249)
|+.+++|++.. . . ......+.+.+|.+.+.++. |.++ + .+++++.|+.|++||+++++....+ .
T Consensus 118 d~~v~iw~~~~-~----~----~~~~~~~~~~~h~~~v~~~~-~~~~---~-~l~s~s~d~~i~~wd~~~~~~~~~~--~ 181 (340)
T 1got_B 118 DNICSIYNLKT-R----E----GNVRVSRELAGHTGYLSCCR-FLDD---N-QIVTSSGDTTCALWDIETGQQTTTF--T 181 (340)
T ss_dssp TCEEEEEETTT-C----S----BSCEEEEEEECCSSCEEEEE-EEET---T-EEEEEETTSCEEEEETTTTEEEEEE--C
T ss_pred CCEEEEEECCC-C----C----CCCEEEEEECCCCCCEEEEE-ECCC---C-CEEEEECCCCEEEEECCCCCEEEEE--C
T ss_conf 98199997966-8----8----86136778448776389999-8799---9-6999989992999989999188997--6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf 98875499999279999999945991999959999831000357878856999975999976668899889999879909
Q 000861 984 PEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEV 1063 (1249)
Q Consensus 984 ~h~~~I~si~~spdg~~Lvtgs~dG~I~iWDlr~~~~i~s~~~~~~~~I~~l~~~sp~g~~~~~~~~~~~l~~as~dg~I 1063 (1249)
+|.+.|.+++|+|++.++++|+.||.|++||++.+.++..+. +|...|.+++| +|++. ++++++.|+.|
T Consensus 182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~-~p~~~---------~l~s~s~d~~v 250 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICF-FPNGN---------AFATGSDDATC 250 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEE-CTTSS---------EEEEEETTSCE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEE-CCCCC---------EEEEECCCCCE
T ss_conf 999866899998999999999389939997789981678974-87687799999-49999---------89997489819
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-EE
Q ss_conf 99887999245987613479998766555555699888899853333346543234568999988990797115999-29
Q 000861 1064 SLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPPRLLGIRSLLPLPGG-DL 1142 (1249)
Q Consensus 1064 ~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~V~sl~~spdg-~L 1142 (1249)
++||+++++....+... .+...+.+++|+|++ ++
T Consensus 251 ~iwd~~~~~~~~~~~~~---------------------------------------------~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 251 RLFDLRADQELMTYSHD---------------------------------------------NIICGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEETTTTEEEEEECCT---------------------------------------------TCCSCEEEEEECTTSSEE
T ss_pred EEEECCCCCEEEEECCC---------------------------------------------CCCCCEEEEEECCCCCEE
T ss_conf 99988999189997268---------------------------------------------852416999998999999
Q ss_pred EEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99708982999939999860797099988888986300025775399551545776520247789864102666774332
Q 000861 1143 LTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVLAAAATDSAGCHRDS 1222 (1249)
Q Consensus 1143 itgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~H~d~ 1222 (1249)
++|+.|+.|++||+.+++....+. +|.+.
T Consensus 286 ~~g~~d~~i~vwd~~~~~~~~~~~---------------------------------------------------~h~~~ 314 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADRAGVLA---------------------------------------------------GHDNR 314 (340)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEE---------------------------------------------------CCSSC
T ss_pred EEECCCCEEEEEECCCCCEEEEEE---------------------------------------------------CCCCC
T ss_conf 997799909998841383865850---------------------------------------------------57784
Q ss_pred EEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 038874632997899981897089759
Q 000861 1223 ILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1223 I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
|++++ |++++.+|+||+.||.|++||
T Consensus 315 v~~~~-~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLG-VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEE-ECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEE-ECCCCCEEEEECCCCCEEECC
T ss_conf 88999-829999899972886189559
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=322.14 Aligned_cols=404 Identities=13% Similarity=0.188 Sum_probs=274.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCCCCCCCE
Q ss_conf 888898998731233689998647-99948999133247556999938--998799997899699997898764321000
Q 000861 799 SSPADLTGLPSFVRTSSIPDSGWR-PRGILVAHLQEHCSAVNEIAISH--DHSFFVSASDDSTVKVWDSRKLEKDISFRS 875 (1249)
Q Consensus 799 ~~~~~~~G~~~~~~s~~~~~~~W~-p~G~li~~L~~H~~~V~~ia~sp--dg~~laTgs~Dg~VkIWD~~~~~~~~~~~~ 875 (1249)
.+.++++|..+++.+.+....+|+ .+|+++..+.+|.+.|++++|+| ++.++++|+.||.|++||+.++. .
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~------~ 735 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE------C 735 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS------E
T ss_pred EEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCC------H
T ss_conf 9999269998999818995999877999368999589973799998408996599998089709999899963------4
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC----------------------CCC--------
Q ss_conf 16864169733899993299999999589929999844456678964----------------------333--------
Q 000861 876 RLTYHLEGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNV----------------------EKY-------- 925 (1249)
Q Consensus 876 ~~t~~~h~~~V~~i~fspdg~~Lasas~Dg~I~iwdi~~~~~~~g~~----------------------~~~-------- 925 (1249)
..++.+|.+.|.+++|+|+++.+++++.||.|++|++... ...... ..+
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred HHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-CCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf 2201277797889999259998999978985999968888-655302023210246776445650179999978998899
Q ss_pred ------------CCCCCEEE-ECCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCCEEEE
Q ss_conf ------------57421044-03899967999981488988439999988994999985799632065137988754999
Q 000861 926 ------------SGISDIKK-KDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSL 992 (1249)
Q Consensus 926 ------------~~~~~i~~-~~~h~~~V~~i~~fs~d~~~g~~L~sgs~dg~I~iwDlrt~~~~~~l~~~~h~~~I~si 992 (1249)
.....+.. ...|.+.+.++. |+|+ +..+++++.+|.|++||+.++.....+ .+|.+.|+++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~-~sp~---~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~h~~~v~~v 888 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD-FSPY---DHLAVIALSQYCVELWNIDSRLKVADC--RGHLSWVHGV 888 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEE-ECSS---TTEEEEECSSSCEEEEETTTTEEEEEE--CCCSSCEEEE
T ss_pred EECCCCEEEEEECCCCCEEEECCCCCCCEEEEE-ECCC---CCEEEEEECCCEEEEEECCCCCEEEEC--CCCCCCEEEE
T ss_conf 975895999995689723577478777607999-8278---888999947986999986789565322--7876656899
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCC-----------------------------C-------CCCCCCCCCEEEEE
Q ss_conf 99279999999945991999959999831-----------------------------0-------00357878856999
Q 000861 993 VTGPCGNWFVSGSSRGVLTLWDLRFLVPV-----------------------------N-------SWQYSQVCPIEKMC 1036 (1249)
Q Consensus 993 ~~spdg~~Lvtgs~dG~I~iWDlr~~~~i-----------------------------~-------s~~~~~~~~I~~l~ 1036 (1249)
+|+|++.++++++.||.+++||++..... . .........+.+++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEE
T ss_conf 99899998999958972898874665201021133103689759986899813776248984476508972567278999
Q ss_pred EECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97599997666889988999987990999887999245987613479998766555555699888899853333346543
Q 000861 1037 LFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKY 1116 (1249)
Q Consensus 1037 ~~sp~g~~~~~~~~~~~l~~as~dg~I~iWDi~tg~~~~~l~~~~~~~~~~i~~i~~sp~~~~~~~~~s~dg~~~~~~~~ 1116 (1249)
+ +|++. ++++++.+|.|.+||+.++.....+..+ ...+..+.|+|..... ++++.|+ .+
T Consensus 969 ~-sp~g~---------~l~~g~~~g~i~i~d~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l-~s~~~dg------~i 1027 (1249)
T 3sfz_A 969 L-SPHLE---------YVAFGDEDGAIKIIELPNNRVFSSGVGH----KKAVRHIQFTADGKTL-ISSSEDS------VI 1027 (1249)
T ss_dssp E-CTTSS---------EEEEEETTSCCEEEETTTTSCEEECCCC----SSCCCCEEECSSSSCE-EEECSSS------BE
T ss_pred E-CCCCC---------EEEEECCCCCEEEEECCCCCEEEECCCC----CCCEEEEEECCCCCEE-EEECCCC------EE
T ss_conf 9-58997---------7999869998899975787234430367----7716899998999989-9986998------79
Q ss_pred CCCCCCC-----CCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEE
Q ss_conf 2345689-----99988990797115999299970898299993999986079709998888898630002577539955
Q 000861 1117 RVDELNE-----PPPRLLGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQ 1191 (1249)
Q Consensus 1117 ~~~~~~~-----~~~~~~~V~sl~~spdg~Litgs~Dg~IriWDl~~~~~~~~i~g~~~~~~~~~~~y~~~~~~~v~~~~ 1191 (1249)
++|+... ...|...+.++.+++++.+++++.|+.|++||+.+++....+.++. ..+..+.+++
T Consensus 1028 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~------------~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ------------GTVLSCAISS 1095 (1249)
T ss_dssp EEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCS------------SCCCCEEECS
T ss_pred EEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCC------------CCEEEEEECC
T ss_conf 9998799966898527873899999089958999788968998889886558874668------------8489999989
Q ss_pred CCCCCCC-CCHHHHHHHHHHHC--CCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 1545776-52024778986410--2666774332038874632997899981897089759
Q 000861 1192 ERKRQPL-TSKLTAKAVLAAAA--TDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1249 (1249)
Q Consensus 1192 e~~~~~~-~~~~~~~~~~~~~~--~~~~~~H~d~I~sla~~s~dg~~LvSgs~DG~IkIWd 1249 (1249)
++..... +.+...+.|..... ...+.+|.+.|++++ |+|++++|++|+.||.|++|+
T Consensus 1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~-~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA-FSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEE-ECSSSSEEEEEETTSCCCEEE
T ss_pred CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEE
T ss_conf 999899984999489987898500125506877679999-979999899982899799998
Done!