BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000863
(1247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 149/312 (47%), Gaps = 25/312 (8%)
Query: 58 WLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK 117
W + IA A V+ + + +D Y +V+ I G +S ++GV+ K++ H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 118 RMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQENDHLKMVISKIEALRP 170
RM +NPR+++L +LEY++ +Q F +LQ E ++++ + I L+P
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 171 NVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGH-C 229
+V++ EK +S AQ L+ I+ + V++ RIAR GA I + + +G
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGA 335
Query: 230 ELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289
L +++K+ +E+ T + C C +LLRG +E L +V+ +Q A
Sbjct: 336 GLLEIKKIGDEYFT-------------FITECKDPKACTILLRGASKEILSEVERNLQDA 382
Query: 290 VFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADD 349
+ ++ L+ + GA+ +M + H++++ + M + P VA + +
Sbjct: 383 MQVCRNVLLDPQLVPGGGAS--EMAVAHALTEKSKAM--TGVEQWPYRAVAQALEVIPRT 438
Query: 350 STRDDGSVSLRL 361
++ G+ ++RL
Sbjct: 439 LIQNCGASTIRL 450
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 83 MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN 142
+D YV+V+ I G +S +KGV+ K++ H +M+ NPR+++L LEY++ +
Sbjct: 198 IDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Query: 143 QL-------ASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 195
Q +N +LQ E + ++++ +I A+RP +++ EK VS AQ LL S++
Sbjct: 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVL 317
Query: 196 LNVKRPLLERIARCTGALITPSIDNISTTRLG-HCELFKLEKVSEEH 241
VK+ RIAR TGA I ++++ + +G +C LFK+E + +E+
Sbjct: 318 RRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEY 364
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 196
P+QL SF L+QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVR 314
Query: 197 NVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLM 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ ++
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------MI 361
Query: 257 YFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 311
+ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 196
P+QL SF L+QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVR 314
Query: 197 NVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLM 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ ++
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------MI 361
Query: 257 YFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 311
+ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 196
P+QL SF L+QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVR 314
Query: 197 NVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLM 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ ++
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------MI 361
Query: 257 YFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 311
+ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 26/238 (10%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV-------- 140
+KV GS N++ FI G+V K H +M +N ++ ++ ALE ++
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 141 --PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 198
P+++ F L QE + K ++ KI+ NV+L +K + AQ L + I V V
Sbjct: 257 SDPSKIQDF---LNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRV 313
Query: 199 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYF 258
K+ +E++A+ TGA I +D+++ + LG E + K+ ++ T +
Sbjct: 314 KKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMT-------------FV 360
Query: 259 EGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLK 316
GC +L+RG + +V+ + A+ + FL GA ++ ++
Sbjct: 361 MGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMR 418
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +++ A GS N++ + G+V K + H M + N ++ ++ +LE ++
Sbjct: 205 DNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEI 264
Query: 141 ----PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 196
P Q+ F L +E + +K + KI A NV++ +K + AQ L K + V
Sbjct: 265 RINDPTQMQKF---LDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVR 321
Query: 197 NVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLM 256
K+ LE++AR TG + +ID IS LG+ L + KV E+ + K P +
Sbjct: 322 RAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISI 381
Query: 257 YFEGCPRRL 265
G RL
Sbjct: 382 LIRGGLERL 390
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 101 ESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQ 153
+S ++GV+ K++ H RM +NPR+++L +LEY++ +Q F +LQ
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 154 ENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213
E +++ + I L+P+V++ EK +S AQ L+ ++ + V++ RIAR GA
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 214 ITPSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLR 272
I + + +G L +++K+ +E+ T + C C +LLR
Sbjct: 123 IVSRPEELREDDVGTGAGLLEIKKIGDEYFT-------------FITDCKDPKACTILLR 169
Query: 273 G 273
G
Sbjct: 170 G 170
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 28/201 (13%)
Query: 87 DYVKVKCIAK--GSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV---- 140
D+ ++ + K G+ +++ I G++ K H M ++ ++ +L LE ++
Sbjct: 194 DFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253
Query: 141 ------PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 194
P+ + F L QE + L+ ++ KI+++ NV++ +K + AQ L I
Sbjct: 254 NLRIEDPSMIQKF---LAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYA 310
Query: 195 VLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKT 254
V VK+ ++++A+ TGA I +ID IS++ LG E + KV E++ T
Sbjct: 311 VRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMT----------- 359
Query: 255 LMYFEGCPRRLGCMVLLRGKC 275
+ GC +L+RG+
Sbjct: 360 --FVTGCKNPKAVSILVRGET 378
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 26/212 (12%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV-------- 140
+K++ A GS ++S I G+V K H M + N ++L+L +E+++
Sbjct: 151 IKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKI 210
Query: 141 --PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 198
P Q+ F L QE ++ + K+ A NV+ +K + AQ + I V V
Sbjct: 211 TSPGQMQLF---LDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRV 267
Query: 199 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYF 258
K+ L+R+++ TGA I +D I+T +G L EE E + Y
Sbjct: 268 KKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLV------EEKEVRG-------GKMTYV 314
Query: 259 EGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
GC VLL G + + H + A+
Sbjct: 315 TGCQNSKAVTVLLHGGTEHVVDSLDHALNDAL 346
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 41/286 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRV----------PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQ 184
+E + P +L F ++QE LK ++++I+A NVL +K + AQ
Sbjct: 233 IEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 289
Query: 185 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 244
L + I VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 290 HYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS------ 343
Query: 245 NQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
++++ E C +L+RG +++V V AV
Sbjct: 344 -------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 41/286 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238
Query: 135 LEYQRV----------PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQ 184
+E + P +L F ++QE LK ++++I+A NVL +K + AQ
Sbjct: 239 IEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 295
Query: 185 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 244
L + I VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 296 HYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS------ 349
Query: 245 NQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
++++ E C +L+RG +++V V AV
Sbjct: 350 -------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 41/286 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRV----------PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQ 184
+E + P +L F ++QE LK ++++I+A NVL +K + AQ
Sbjct: 233 IEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 289
Query: 185 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 244
L + I VK+ +E++A+ TGA + +I +S LG L + K+S
Sbjct: 290 HYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS------ 343
Query: 245 NQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
++++ E C +L+RG +++V V AV
Sbjct: 344 -------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 41/286 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238
Query: 135 LEYQRV----------PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQ 184
+E + P +L F ++QE LK ++++I+A NVL +K + AQ
Sbjct: 239 IEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 295
Query: 185 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 244
L + I VK+ +E++A+ TGA + +I +S LG L + K+S
Sbjct: 296 HYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS------ 349
Query: 245 NQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
++++ E C +L+RG +++V V AV
Sbjct: 350 -------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 105 IKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----------PNQLASFNTLLQQE 154
+ G+V K H +M +N ++ ++ ALE ++ P+++ F L QE
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDF---LNQE 57
Query: 155 NDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 214
+ K ++ KI+ NV+L +K + AQ L + I V VK+ +E++A+ TGA I
Sbjct: 58 TNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117
Query: 215 TPSIDNISTTRLGHCELFKLEKVSEEHET 243
+D+++ + LG E + K+ ++ T
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDRMT 146
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 105 IKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----------PNQLASFNTLLQQE 154
+ G++ K H M ++ ++ +L LE ++ P+ + F L QE
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKF---LAQE 57
Query: 155 NDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 214
+ L+ ++ KI+++ NV++ +K + AQ L I V VK+ ++++A+ TGA I
Sbjct: 58 ENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASI 117
Query: 215 TPSIDNISTTRLGHCELFKLEKVSEEHET 243
+ID IS++ LG E + KV E++ T
Sbjct: 118 VSTIDEISSSDLGTAERVEQVKVGEDYMT 146
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 194
+E + ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 233 IE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVA 277
Query: 195 VLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKT 254
VK+ +E++A+ TGA + +I ++S LG L + K+S +
Sbjct: 278 ARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GDS 324
Query: 255 LMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
+++ E C +L+RG +++V V AV
Sbjct: 325 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAV 360
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238
Query: 135 LEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 194
+E + ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 239 IE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVA 283
Query: 195 VLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKT 254
VK+ +E++A+ TGA + +I ++S LG L + K+S +
Sbjct: 284 ARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GDS 330
Query: 255 LMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
+++ E C +L+RG +++V V AV
Sbjct: 331 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 366
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 194
+E + ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 233 IE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVA 277
Query: 195 VLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKT 254
VK+ +E++A+ TGA + +I ++S LG L + K+S +
Sbjct: 278 ARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GDS 324
Query: 255 LMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
+++ E C +L+RG +++V V AV
Sbjct: 325 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 30/228 (13%)
Query: 98 SPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQEND- 156
SP ++TFIKG+V +H M ++ +N +LIL +LEY++ F + Q +
Sbjct: 203 SPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKL 262
Query: 157 ----------HLKMVI---SKIEALRPN---VLLVEKSVSSYAQDLLLAKEISLVLNVKR 200
LK +I +++ + P+ V++ +K + + D+ I + KR
Sbjct: 263 AASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKR 322
Query: 201 PLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG 260
+ER+ TG S++++S LG L E + EE T N P
Sbjct: 323 RNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPK-------- 374
Query: 261 CPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGA 308
C +L++G L + K V+ + A ++ + + + GA
Sbjct: 375 -----SCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGA 417
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 43/276 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 194
+E + ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 233 IE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVA 277
Query: 195 VLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKT 254
VK+ +E++A+ TGA + +I +S LG L + K+S +
Sbjct: 278 ARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS-------------GDS 324
Query: 255 LMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290
+++ E C +L+RG +++V V AV
Sbjct: 325 MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 29/253 (11%)
Query: 72 FVKPDTSRGGSMDPGDY----VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQ---YR 124
FVK S+D D + +K I G+ ES FI GV K + Q +
Sbjct: 178 FVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFN 237
Query: 125 NPRLLILGGALEYQ--------RVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVE 176
NP++L L LE + RV + + ++ E + + ++E N++L +
Sbjct: 238 NPKILSLNVELELKAEKDNAEVRV-EHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296
Query: 177 KSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEK 236
+ A + I V + R+ + G I + +I LG C LF+ +
Sbjct: 297 LPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQ 356
Query: 237 VSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 296
+ E ++N F+GCP+ C +LLRG + + +V+ + A+
Sbjct: 357 IGSE-----RYN--------LFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRA 403
Query: 297 SLETSFLADEGAT 309
+A GAT
Sbjct: 404 LQNKLIVAGGGAT 416
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 18/229 (7%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ--- 143
+ +KV+ G ++ IKGV+ K+ H +M Q + ++ IL E + +
Sbjct: 185 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 144 ----LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199
+ F L + E + + +I +I+ N+ + + A LLL ++ V V
Sbjct: 245 DVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVG 304
Query: 200 RPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE 259
P +E IA TG I P ++ +LG L K E S F K ++ E
Sbjct: 305 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK--------EIS--FGTTKDK-MLVIE 353
Query: 260 GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGA 308
C + +RG + +++ K + A+ +L + + GA
Sbjct: 354 QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 402
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 25/231 (10%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQ---YRNPRLLILGGALEYQ------- 138
+ +K + G+ ES + GV K + Q Y NP + +L LE +
Sbjct: 186 IGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAE 245
Query: 139 -RVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN 197
RV + + + ++ E + L + KI V+L + + A +++
Sbjct: 246 IRV-HTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGR 304
Query: 198 VKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMY 257
V L+R G I S++ +S+ LG C++F+ ++ E ++N +
Sbjct: 305 VPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE-----RYN--------F 351
Query: 258 FEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGA 308
F GCP+ C ++LRG + +++ + + A+ S +A GA
Sbjct: 352 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGA 402
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 22/222 (9%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP----- 141
+++++ I G ++S +G + K + + + N ++LI L+ +V
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 142 ---NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 198
+ A L + E + +K I+KI N + + + Y + L I+ + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHA 309
Query: 199 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYF 258
+ER+A TG + + D S +LG C++ +E++ ++P + F
Sbjct: 310 DFEGVERLALVTGGEVVSTFDEPSKCKLGECDV--IEEI--------MLGEQP---FLKF 356
Query: 259 EGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 300
GC C ++LRG + L + + + A+ + ET
Sbjct: 357 SGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKET 398
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 13/156 (8%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM------TSQYRNPRLLILGGALEYQRV 140
D +K++ GS ++S I GV+ K+ H +M +L IL E +
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP 281
Query: 141 PNQ-------LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 193
+ + + L E D K +I ++ +V++ + A LLL ++
Sbjct: 282 KTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLP 341
Query: 194 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHC 229
V V LE IA T I P ++S +LG C
Sbjct: 342 AVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTC 377
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 1127 FSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQG-GKSNVFFAKSLDERFIIKQV 1185
F Y F +LR++ DF SL+RS +S F S D+R+IIK +
Sbjct: 77 FKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTI 136
Query: 1186 KKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQV 1225
++ +Y +Y+ + T L + LG+Y++
Sbjct: 137 TSEDVAEMHNILKKYHQYIVE---CHGITLLPQFLGMYRL 173
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 144/329 (43%), Gaps = 48/329 (14%)
Query: 76 DTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLI---LG 132
D + S+D D VK + G+ ++ ++G+V T+ + + +T + LI L
Sbjct: 175 DPATATSVDLRDIKIVKKLG-GTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLS 233
Query: 133 GA---LEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQ 184
++ Q V + + +L++E ++ ++ +I+ NVLL++KS+ S A
Sbjct: 234 APKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLAL 293
Query: 185 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 244
L +I +V +++R +E I + G +D + LG EL +
Sbjct: 294 HFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAEL------------A 341
Query: 245 NQFNKKPSKTLMYFEGC--PRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSF 302
+ + S L+ GC P + +++RG + +++ + + A+ L + +
Sbjct: 342 EEVSLNGSGKLIKITGCASPGK-TVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRAL 400
Query: 303 LADEGATLPKMRLKHSISKPERMMAD----------NAISAIPSSKVAAN--------YQ 344
+A GA P++ L +++ R ++ +A+ IPS+ +A N
Sbjct: 401 IAGGGA--PEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPST-LAENAGLNPISTVT 457
Query: 345 EVADDSTRDDGSVSLRLEHGGLESLSEQL 373
E+ + + + + + + GG+ ++ E+L
Sbjct: 458 ELRNRHAQGEKTTGINVRKGGISNILEEL 486
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 102/258 (39%), Gaps = 44/258 (17%)
Query: 98 SPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASF-------NTL 150
S +++ I+G+V +H M + + +L +LEY++ F L
Sbjct: 192 SETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKL 251
Query: 151 LQQENDHLKMVISKIEALRPNV---------LLVEKSVSSYAQDLLLAKEISLVLNVKRP 201
++ E ++ + KI L+ V ++ +K + ++ D L + I + KR
Sbjct: 252 VKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRR 311
Query: 202 LLERIARCTGALITPSIDNIS-TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG 260
+ER+ G + S+D+++ LGH +++ + EE T + E
Sbjct: 312 NMERLTLACGGIALNSLDDLNPDCLLGHAGVYEY-TLGEEKFT-------------FIEK 357
Query: 261 CPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSIS 320
C +L++G + L ++K ++ + A + D+G +P
Sbjct: 358 CNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKN-------AIDDGCVVP------GAG 404
Query: 321 KPERMMADNAISAIPSSK 338
E MA+ + PS K
Sbjct: 405 AVEVAMAEALVKYKPSVK 422
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 1126 KFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQG-GKSNVFFAKSLDERFIIKQ 1184
+F Y F +LR++ D+ S++RS ++ G+ F + D RF+IK
Sbjct: 92 RFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKT 151
Query: 1185 VKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQV 1225
V ++ +Y +++ + + T L + LG+Y++
Sbjct: 152 VSSEDVAEMHNILKKYHQFIVECHGN---TLLPQFLGMYRL 189
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 171 NVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCE 230
N + + + +Y + L A + + + +ER+A TG I + D+ +LG C+
Sbjct: 275 NCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCK 334
Query: 231 LFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREEL 279
L + + E+ L++F G C ++LRG ++ L
Sbjct: 335 LIEEVMIGEDK-------------LIHFSGVALGEACTIVLRGATQQIL 370
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 26/189 (13%)
Query: 98 SPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALE-------YQRVPNQLASFNTL 150
S ES I G + + M + N ++ L +L+ Q V + +
Sbjct: 198 SQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQI 257
Query: 151 LQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCT 210
Q+E+D K I KI A NV+L + + V V + L+RIA+ +
Sbjct: 258 RQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS 317
Query: 211 GALITPSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR 264
GA + ++ N+ + LG E E++ ++ L+ + R
Sbjct: 318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE-------------LILIKNTKAR 364
Query: 265 LGCMVLLRG 273
V+LRG
Sbjct: 365 TSASVILRG 373
>pdb|2FJC|A Chain A, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|B Chain B, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|C Chain C, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|D Chain D, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|E Chain E, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|F Chain F, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|G Chain G, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|H Chain H, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|I Chain I, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|J Chain J, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|K Chain K, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|L Chain L, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|M Chain M, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|N Chain N, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|O Chain O, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|P Chain P, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
Length = 156
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 403 HDVGLDFRSFNEC-EDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEV 461
H G++F+ +E E+ VS+ +FD + + L ++ Q + E L E E+
Sbjct: 38 HIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEI 97
Query: 462 S-----------GEYFSAADTNQSILVSFSSRCVLKGTVCERSRLL 496
+ EY S + +L + S V G + + R L
Sbjct: 98 TIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,810,439
Number of Sequences: 62578
Number of extensions: 1483150
Number of successful extensions: 3771
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3703
Number of HSP's gapped (non-prelim): 43
length of query: 1247
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1137
effective length of database: 8,089,757
effective search space: 9198053709
effective search space used: 9198053709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)