Query 000863
Match_columns 1247
No_of_seqs 377 out of 1745
Neff 6.2
Searched_HMMs 46136
Date Tue Apr 2 00:31:05 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 8E-176 2E-180 1612.8 61.9 1104 4-1230 279-1429(1598)
2 cd03334 Fab1_TCP TCP-1 like do 100.0 3.6E-49 7.8E-54 441.1 28.9 259 36-307 2-261 (261)
3 TIGR02344 chap_CCT_gamma T-com 100.0 5.8E-47 1.3E-51 463.0 29.0 297 3-313 91-414 (525)
4 TIGR02339 thermosome_arch ther 100.0 1.5E-44 3.2E-49 441.2 30.3 297 3-313 91-413 (519)
5 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.5E-44 1.6E-48 435.5 29.9 296 3-313 98-420 (526)
6 KOG0364 Chaperonin complex com 100.0 7E-45 1.5E-49 406.5 16.5 296 3-313 94-414 (527)
7 cd03343 cpn60 cpn60 chaperonin 100.0 1.6E-43 3.5E-48 432.3 29.2 296 3-313 90-410 (517)
8 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2E-42 4.4E-47 423.0 30.0 297 3-313 83-411 (527)
9 PTZ00212 T-complex protein 1 s 100.0 2.8E-42 6E-47 421.8 30.7 289 3-313 102-419 (533)
10 TIGR02343 chap_CCT_epsi T-comp 100.0 3E-42 6.4E-47 421.2 30.3 296 3-313 102-424 (532)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.3E-42 1.4E-46 418.5 30.4 291 3-313 91-412 (522)
12 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.4E-41 3E-46 414.6 31.9 289 3-313 90-407 (517)
13 TIGR02342 chap_CCT_delta T-com 100.0 1.3E-41 2.7E-46 414.9 30.3 295 3-313 84-410 (517)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 2.8E-41 6.1E-46 411.9 30.6 293 3-313 91-419 (531)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.3E-41 7.2E-46 411.6 30.5 295 3-313 83-409 (515)
16 TIGR02340 chap_CCT_alpha T-com 100.0 1E-40 2.3E-45 408.5 30.8 296 3-313 87-415 (536)
17 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.7E-41 5.9E-46 408.6 25.3 263 3-313 91-373 (480)
18 TIGR02345 chap_CCT_eta T-compl 100.0 1.7E-40 3.8E-45 405.3 29.7 292 3-313 92-413 (522)
19 KOG0361 Chaperonin complex com 100.0 8.2E-41 1.8E-45 368.0 20.2 290 3-313 95-416 (543)
20 TIGR02341 chap_CCT_beta T-comp 100.0 2.7E-39 5.9E-44 394.1 32.2 290 3-313 91-408 (519)
21 TIGR02346 chap_CCT_theta T-com 100.0 1.8E-37 3.9E-42 379.2 29.7 292 3-313 93-411 (531)
22 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 5.2E-38 1.1E-42 380.2 23.9 271 3-313 87-376 (484)
23 cd00309 chaperonin_type_I_II c 100.0 4.1E-37 8.9E-42 371.6 26.9 259 3-313 83-359 (464)
24 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-36 2.2E-41 369.7 26.8 288 4-312 65-377 (485)
25 KOG0358 Chaperonin complex com 100.0 3.2E-37 7E-42 339.2 18.6 297 3-314 101-428 (534)
26 KOG0359 Chaperonin complex com 100.0 1.8E-37 3.8E-42 347.0 16.7 293 3-313 92-410 (520)
27 cd03333 chaperonin_like chaper 100.0 2.5E-36 5.4E-41 327.7 24.2 207 40-299 3-209 (209)
28 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.8E-36 1.3E-40 361.5 25.8 262 3-313 83-363 (472)
29 KOG0360 Chaperonin complex com 100.0 1.9E-36 4E-41 342.2 18.4 295 3-312 94-420 (545)
30 KOG0363 Chaperonin complex com 100.0 1.1E-35 2.3E-40 325.9 18.9 288 3-312 95-411 (527)
31 COG0459 GroL Chaperonin GroEL 100.0 1.3E-34 2.8E-39 349.5 25.1 291 3-313 86-407 (524)
32 PRK12849 groEL chaperonin GroE 100.0 1.7E-30 3.7E-35 317.4 25.8 265 3-313 89-421 (542)
33 PRK00013 groEL chaperonin GroE 100.0 1.9E-30 4.2E-35 317.0 24.9 266 3-313 89-421 (542)
34 PRK12851 groEL chaperonin GroE 100.0 5.5E-30 1.2E-34 313.2 25.7 266 3-313 90-422 (541)
35 PTZ00114 Heat shock protein 60 100.0 6.1E-30 1.3E-34 313.9 26.2 265 3-313 101-434 (555)
36 cd03344 GroEL GroEL_like type 100.0 8.2E-30 1.8E-34 310.5 26.6 265 3-313 87-419 (520)
37 TIGR02348 GroEL chaperonin Gro 100.0 8E-30 1.7E-34 311.2 24.9 265 3-313 88-420 (524)
38 KOG0362 Chaperonin complex com 100.0 6.7E-29 1.5E-33 283.2 24.6 291 4-314 102-415 (537)
39 PRK12850 groEL chaperonin GroE 100.0 4.2E-29 9.1E-34 305.6 24.6 266 3-313 90-422 (544)
40 PRK12852 groEL chaperonin GroE 100.0 1.8E-28 3.8E-33 300.7 24.3 265 3-313 90-422 (545)
41 CHL00093 groEL chaperonin GroE 100.0 4.4E-28 9.5E-33 296.2 22.0 267 3-313 89-421 (529)
42 PLN03167 Chaperonin-60 beta su 100.0 1.5E-27 3.2E-32 293.6 19.7 275 3-313 145-476 (600)
43 PRK14104 chaperonin GroEL; Pro 100.0 5.7E-27 1.2E-31 286.8 24.8 265 3-313 90-422 (546)
44 COG5253 MSS4 Phosphatidylinosi 99.9 1.2E-27 2.6E-32 272.3 7.8 204 1014-1243 241-453 (612)
45 smart00330 PIPKc Phosphatidyli 99.9 4E-26 8.6E-31 263.0 13.5 128 1106-1243 15-145 (342)
46 cd00139 PIPKc Phosphatidylinos 99.9 5.6E-26 1.2E-30 258.6 13.0 118 1122-1243 52-173 (313)
47 KOG0229 Phosphatidylinositol-4 99.9 2E-24 4.4E-29 246.2 10.4 115 1125-1242 96-212 (420)
48 PLN03185 phosphatidylinositol 99.9 8.6E-24 1.9E-28 261.0 14.1 115 1125-1243 402-518 (765)
49 KOG0357 Chaperonin complex com 99.9 6.6E-23 1.4E-27 224.9 12.7 194 3-312 94-287 (400)
50 PF01504 PIP5K: Phosphatidylin 99.7 2.6E-17 5.5E-22 183.8 8.0 86 1154-1243 2-90 (252)
51 KOG0356 Mitochondrial chaperon 98.3 7.2E-06 1.6E-10 97.5 13.2 273 4-311 104-434 (550)
52 KOG0230 Phosphatidylinositol-4 95.2 0.016 3.4E-07 76.6 4.4 99 523-635 659-757 (1598)
53 cd01143 YvrC Periplasmic bindi 60.7 21 0.00045 37.9 6.7 51 162-212 53-110 (195)
54 PF02579 Nitro_FeMo-Co: Dinitr 59.1 27 0.00059 32.7 6.5 46 161-207 45-90 (94)
55 cd01144 BtuF Cobalamin binding 53.7 30 0.00065 38.3 6.7 52 162-213 50-108 (245)
56 TIGR03659 IsdE heme ABC transp 53.1 24 0.00052 40.5 6.0 52 162-213 84-141 (289)
57 PRK09534 btuF corrinoid ABC tr 52.8 28 0.0006 41.6 6.6 52 161-212 111-169 (359)
58 cd00851 MTH1175 This uncharact 51.0 36 0.00077 32.5 5.9 38 161-199 55-92 (103)
59 cd00562 NifX_NifB This CD repr 48.3 41 0.00088 32.0 5.8 38 161-199 53-90 (102)
60 PF06296 DUF1044: Protein of u 46.7 61 0.0013 32.9 6.8 77 1130-1206 2-106 (120)
61 cd01138 FeuA Periplasmic bindi 46.2 36 0.00078 37.8 5.8 50 162-212 59-112 (248)
62 COG1433 Uncharacterized conser 39.1 88 0.0019 31.8 6.6 51 161-212 57-107 (121)
63 cd01146 FhuD Fe3+-siderophore 38.2 68 0.0015 35.8 6.5 51 162-212 58-114 (256)
64 PF01497 Peripla_BP_2: Peripla 36.4 81 0.0018 34.4 6.6 52 162-213 53-112 (238)
65 PRK03379 vitamin B12-transport 35.7 66 0.0014 36.4 5.9 51 162-212 65-122 (260)
66 cd01141 TroA_d Periplasmic bin 32.4 51 0.0011 34.9 4.1 35 161-195 61-96 (186)
67 cd01139 TroA_f Periplasmic bin 31.9 78 0.0017 37.1 5.9 51 162-212 84-147 (342)
68 cd04743 NPD_PKS 2-Nitropropane 31.8 1.2E+02 0.0026 35.9 7.2 55 160-215 73-127 (320)
69 cd01147 HemV-2 Metal binding p 30.3 72 0.0016 35.6 5.0 51 162-212 67-126 (262)
70 COG1504 Uncharacterized conser 29.8 1.8E+02 0.0039 29.1 6.7 50 164-213 56-111 (121)
71 cd01140 FatB Siderophore bindi 29.4 1E+02 0.0022 34.7 6.1 51 162-212 65-122 (270)
72 cd00636 TroA-like Helical back 29.0 71 0.0015 31.2 4.2 34 162-195 54-87 (148)
73 PRK11411 fecB iron-dicitrate t 27.2 1.3E+02 0.0028 34.8 6.6 51 162-212 94-151 (303)
74 PF12226 Astro_capsid_p: Turke 26.0 33 0.00071 36.3 1.2 50 1128-1183 101-153 (230)
75 TIGR03151 enACPred_II putative 24.2 2.2E+02 0.0048 33.4 7.7 56 160-215 78-133 (307)
76 PF06677 Auto_anti-p27: Sjogre 23.4 46 0.001 27.4 1.3 26 507-532 4-29 (41)
77 COG0614 FepB ABC-type Fe3+-hyd 22.5 1.6E+02 0.0034 33.8 6.1 52 162-213 108-165 (319)
78 cd01149 HutB Hemin binding pro 21.7 1.8E+02 0.0038 32.1 6.1 51 162-212 51-109 (235)
79 TIGR03868 F420-O_ABCperi propo 21.6 94 0.002 35.4 4.0 51 162-212 71-143 (287)
80 cd01148 TroA_a Metal binding p 20.6 1.2E+02 0.0026 34.4 4.6 51 162-212 72-141 (284)
81 COG1779 C4-type Zn-finger prot 20.0 1E+02 0.0022 33.8 3.5 42 516-575 10-51 (201)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8e-176 Score=1612.77 Aligned_cols=1104 Identities=47% Similarity=0.724 Sum_probs=816.7
Q ss_pred cceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 000863 4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSM 83 (1247)
Q Consensus 4 ~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~~~~w~~~l~~l~~~A~~~V~~d~~~~~~~ 83 (1247)
+..+-+.+...+.....+....|+.+..+|+++++.||++.+.+++..+....+|.++++.|+|+|+++++|+.+.++.|
T Consensus 279 s~s~s~~~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~m 358 (1598)
T KOG0230|consen 279 SNSFSAPEYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLM 358 (1598)
T ss_pred cCccCCCCccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCc
Confidence 44444555555566667777899999999999999999999999998887778999999999999999999999999999
Q ss_pred CccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCCHHHHHHHHHHHHHHHHHHHH
Q 000863 84 DPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVIS 163 (1247)
Q Consensus 84 Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~ 163 (1247)
||++|||||||+||++.||++|+||||.|+++||+|++++++|||+|+.|+|||+|..+++.|++++++||++||+++|+
T Consensus 359 d~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~va 438 (1598)
T KOG0230|consen 359 DPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVA 438 (1598)
T ss_pred CcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCCCCceeeeEEEEEEecccccc
Q 000863 164 KIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 243 (1247)
Q Consensus 164 rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~ 243 (1247)
||.+.+||||||+|+|+++|+++|.+.||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++|
T Consensus 439 rI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h-- 516 (1598)
T KOG0230|consen 439 RIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH-- 516 (1598)
T ss_pred HHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccccccCC-CCcc
Q 000863 244 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHS-ISKP 322 (1247)
Q Consensus 244 ~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~~~~~~-~~~~ 322 (1247)
+..||||||+||++++||||+|||++.++|++||+|++++++++||+.+|++|++|.|+.+.......+ ...+
T Consensus 517 ------k~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~ 590 (1598)
T KOG0230|consen 517 ------KPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVET 590 (1598)
T ss_pred ------cchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceecc
Confidence 467999999999999999999999999999999999999999999999999999999999875444333 1111
Q ss_pred cccccccccccCCCccccccccccccCCCCCCCccccccccCcccchhhhccCCCccccccccCC--c----CCCCCCcc
Q 000863 323 ERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDH--R----YGDGPTDA 396 (1247)
Q Consensus 323 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~--~----~~~~~~~~ 396 (1247)
. ...++++++|+++..+.+.+.......+..+.+.....+.+ +.+|...++++... + +... ...
T Consensus 591 ~--~~~~~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~~~~~l-------s~sp~~~~~~~~~~i~P~~~~~e~~-~~~ 660 (1598)
T KOG0230|consen 591 S--IINRSISTSPGETDSTAEKAPVEALQVEPNRFNGALSSELL-------SSSPFLEFPLDLLEIAPGELVIETR-LSS 660 (1598)
T ss_pred c--ccccccccCCCCCcchhcccchhhhccchhhhhccccccee-------ecccccccCCCccccCCccceeecc-hhh
Confidence 2 34566778887766655544422222233333322111111 33454444444220 0 0000 000
Q ss_pred c-----CCCcccccccccccccccccccccc-cCCcchhhHHHHHHHhhhhhhhcc---cchhhc--ccccccccccccc
Q 000863 397 C-----NDNLEHDVGLDFRSFNECEDLKVSI-VNSFDALQQELQEIMGQEERQLGE---SHELMK--FEGVNEDEVSGEY 465 (1247)
Q Consensus 397 ~-----~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~ 465 (1247)
+ ...++....... +...... -+...+.......-...+...... ....+. ....++.. ..++
T Consensus 661 ~~~~~~~~~lv~~~es~~------~~~~~s~~~~~~~l~e~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~-~s~~ 733 (1598)
T KOG0230|consen 661 YSKGPKQNGLVPAHESVL------NDLHESTLSILSKLPETRSGTHEGNEDKGPGLEPELANNQNIQRPEETEEQ-SSKD 733 (1598)
T ss_pred hcCchhhccccccccccc------cccccccccccccccchhcccchhccccCccccccccccccccchhhhhhh-hccc
Confidence 0 011111100000 0000000 000000000000000000000000 000000 00011111 5567
Q ss_pred CCCCCCCceEEEEEEeeecCCCCccCCceEEEEeecCCCCcchHHHHHHhhcCCCCCCCCCchhhhcceeEEEecCcEEE
Q 000863 466 FSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLT 545 (1247)
Q Consensus 466 ~~~p~~HQsI~Vl~Ss~~~~~~~~C~~P~l~~i~fY~~~D~tLG~FLe~~c~~~~~~C~sC~~pm~~H~r~yvH~~g~l~ 545 (1247)
.++|.+||+|+||||++|.+++.+|++||+++|+|||++|++|||||+++||++.|.|++|++||++|+|+|||++||++
T Consensus 734 ~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~ 813 (1598)
T KOG0230|consen 734 ALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLT 813 (1598)
T ss_pred CCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceE
Confidence 78999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCcEEEEecCcccCCCCCCCCCCceEeccchhhcccHHHHHHhhccCccccCccCCCCCccccce
Q 000863 546 ISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDC 625 (1247)
Q Consensus 546 I~v~~l~~~~lpg~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mSd~tw~lSFgKfLEL~F~~~~~~~r~~~C~Hsl~rDh 625 (1247)
|.|+++++. +||+++|+|||||||++|++. ||+|++|+||++||++||||||||+||+|+++.|+++|||+|||||
T Consensus 814 I~v~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~ 889 (1598)
T KOG0230|consen 814 ISVKKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDC 889 (1598)
T ss_pred EEeeccccc-cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhh
Confidence 999999876 999999999999999999974 8899999999999999999999999999999999999999999999
Q ss_pred eeeceeCCeEEEEEeeeeeeeEEecCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCc
Q 000863 626 LRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDS 705 (1247)
Q Consensus 626 ~ryFg~~~~va~F~Ys~I~v~ev~lPp~~l~~~~~~~~~~~~~e~~~v~~k~~~~f~~v~~~L~~i~~~~~~~~~~~~~~ 705 (1247)
|||||||+|||+|+|++|++|+|.+||.+|+|+ +.+++|+++|.++|+.||+.+|++|.++|++|+++. +
T Consensus 890 L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~-~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~-------~-- 959 (1598)
T KOG0230|consen 890 LRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFN-HIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKD-------E-- 959 (1598)
T ss_pred hhhcccCCceeeeeeccceeEEEeCChhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c--
Confidence 999999999999999999999999999999999 877999999999999999999999999999999651 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccc
Q 000863 706 TDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQ 785 (1247)
Q Consensus 706 ~~~~~~i~eL~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~d~l~lN~l~r~L~~~~~~Wd~r~~~~~~~~~~~~~~~~~~ 785 (1247)
-...+.+|+.+|.+|+.+|++.|+.++++....++..+|+|.+|++||.|...++.||.|++.+..+.| ....+.+
T Consensus 960 --~~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k-~~~~~~~- 1035 (1598)
T KOG0230|consen 960 --NRPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLK-LESSKDT- 1035 (1598)
T ss_pred --ccchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhc-ccccccc-
Confidence 145688999999999999999999999977777889999999999999999999999999999877666 1100000
Q ss_pred CCchhhhhhhcccccccCCC---CCC--------CCCCCCccCCCCCCCCCccchhhhhhhcccCCCCCCCCCC-Ccccc
Q 000863 786 GNASYAQLKELRTDLFCKDS---KLD--------HDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSE-NSKLT 853 (1247)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 853 (1247)
..++...-+..+.. ++. .++++..+. .........+.+++. ++. ....+. ...++
T Consensus 1036 ------~~~~~~~~~~~~~~r~p~~~k~~~~~~~~~~~~s~~~---~~~~~~lp~~~~s~~--~d~--~~~~~~~~~~~~ 1102 (1598)
T KOG0230|consen 1036 ------KPKESETNSTAKRKRSPEPQKGVDEDSFLTDSSSDVS---SLEHLNLPLPEDSNS--TDT--GLSGPSEVLEDN 1102 (1598)
T ss_pred ------ccccccccCccccccCchhhccccccccccccccccC---ccccccCCCCCcccc--cch--hccCcccccccc
Confidence 00000000000000 000 000110000 000000000001100 000 000000 00000
Q ss_pred ccccc---cccccCCCcc-ccccchhhcccccCCCCccccccCCCCCCCCCcccccccCCCcccccccCCccccccchhh
Q 000863 854 SFLHN---REEDVHSDGE-ITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSAL 929 (1247)
Q Consensus 854 ~~~~e---~~~~~~s~~~-~~s~~s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p~~~~s~~~~~ 929 (1247)
.-+.+ .+....+.++ ....+.+.++++|.|....+...|-. ..
T Consensus 1103 ~s~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~g~r~~~~~~P~s--------------------------------~~- 1149 (1598)
T KOG0230|consen 1103 ESIDEMLGSVRNTYSLANKVRKILKQILDSATIGNRANPKSSPFS--------------------------------GQ- 1149 (1598)
T ss_pred cchhhcccccccccchhhHHHHHHHHhcccccccccccCCCCCCc--------------------------------hh-
Confidence 00111 1111122222 24456677777777765432222210 00
Q ss_pred hHHHhhhcCCCCccccccccccccCCC-cccccccCchhhHHH-HHhhhChhhHhhhhccccCCCccccc--cccccccc
Q 000863 930 RFQERIARGLPHSLLHLSSIRSFHASG-DYRSMVRDPVSNVMR-TYSQILPLEAQKLNLILSSTPSFISS--ASRMVEGA 1005 (1247)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-~~~~~~~~~~~k~~~i~~~~p~~~s~--~~~~~~~~ 1005 (1247)
+. .++++.. ....+..+ ++.+|++.||.+++. .+.+....+.++......+.|.+++. ....+.++
T Consensus 1150 --~~--~~~~~~~------~~~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~ 1219 (1598)
T KOG0230|consen 1150 --DH--STDLPLE------SNPIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPPKYPSSESESEPESSS 1219 (1598)
T ss_pred --hh--ccccccc------cCCccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCCcCccccccccccccc
Confidence 00 0011100 01112222 678899999999866 66555666667777778889998887 44458899
Q ss_pred eecccCCCCCCceEEeeCCCchhhhhhhcCChhHHHHHHhhccCCCCCCCccccccCCCccccccccccCCCCCcc-ccc
Q 000863 1006 RLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLD-YIH 1084 (1247)
Q Consensus 1006 ~l~lp~~g~~~~~v~v~e~epsSiIayaL~s~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~ 1084 (1247)
|+++| .|.+|.+++||||||+|+|||||++++|..+-.+. +.+.++..++. .+..+.. ...
T Consensus 1220 rLl~p-~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p---------------~~sis~~~S~~--~~~~s~~~e~~ 1281 (1598)
T KOG0230|consen 1220 RLLLP-LGLNDLVVPVYEDPPPSLIAYALSSKERINQESSP---------------GLSISFSLSNL--QGRLSKISEFD 1281 (1598)
T ss_pred ceecc-ccCCcccCCcccCCCchhhhhhhcchhhccCCCCC---------------Ccccccccccc--ccchhhhhhhh
Confidence 99999 88999999999999999999999998887654211 00101111101 0001100 000
Q ss_pred cCCCCCCCCC------CCCCcccCCC--CCCCceEEEEcCCCCCCCCcceEEEEEcCHHHHHHHHHHcCCChHHHHHhhc
Q 000863 1085 YGSYGSEDAS------SSVGTLFTDP--KKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLS 1156 (1247)
Q Consensus 1085 ~~s~~~~~~~------~~~~~~~~~~--~~~~h~~~~f~~~~~~~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~ 1156 (1247)
....++.+.+ ..+.+..+.. ....|++++|+++.. +|+|++|||++|++||+.||.+|++||+||+
T Consensus 1282 ~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~egk~------k~svk~~yAe~F~~LR~~c~~sEe~fIrSLs 1355 (1598)
T KOG0230|consen 1282 DTKSESLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSEGKA------KYSVKCYYAEQFRALRKICCPSEEDFIRSLS 1355 (1598)
T ss_pred hhhhccccccccchhhhcchhhccccccccccceeeeccCCce------EEEEEEEehhhHHHHHHhhCchHHHHHHHHh
Confidence 0011111111 0111111112 556899999987765 9999999999999999999999999999999
Q ss_pred cccccccCCCCcccceEEeccCceeeeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeeeeEEEEEEecCc
Q 000863 1157 RSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLH 1230 (1247)
Q Consensus 1157 ~~~~~~~~gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~ 1230 (1247)
||.+|.|+|||||++|+||.|||||||+|+++|+++|++|||+||+||+++++++.||+||||||+|||.+.+-
T Consensus 1356 Rc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~ 1429 (1598)
T KOG0230|consen 1356 RCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSP 1429 (1598)
T ss_pred cCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988743
No 2
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=3.6e-49 Score=441.10 Aligned_cols=259 Identities=58% Similarity=0.924 Sum_probs=242.7
Q ss_pred HHHHHHHHHhCCcCccCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccC
Q 000863 36 ALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIK 115 (1247)
Q Consensus 36 al~~qLl~~~~i~~~~k~~~~~w~~~l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~a 115 (1247)
+++.|||..+++. +.+.|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 6889999999998 46799999999999999999765333457999778999999999999999999999999999
Q ss_pred CCCCceeecCCcEEEeecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeE
Q 000863 116 HKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 195 (1247)
Q Consensus 116 hk~M~~~i~nprIlLl~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv 195 (1247)
|++||++++||||||++|+|||+++++++.+++.++++|++|++++|++|+++|||||||+|+|+++|++||.++||+++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v 156 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHHHhCCeEccCCC-CCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCC
Q 000863 196 LNVKRPLLERIARCTGALITPSID-NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGK 274 (1247)
Q Consensus 196 ~~Vk~~~LeRIar~TGA~Iissid-~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~ 274 (1247)
++|++.+|+|||+||||+|+++++ .++++.||+|+.|++++++++. ...++|+||+||+.+.+|||+|||+
T Consensus 157 ~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~--------~~~~~~~~~~~~~~~~~~TIlLRG~ 228 (261)
T cd03334 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCTILLRGG 228 (261)
T ss_pred EecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC--------CCceeEEEEecCCCCceeEEEEECC
Confidence 999999999999999999999954 8899999999999999998521 1347999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCC
Q 000863 275 CREELKKVKHVVQYAVFAAYHLSLETSFLADEG 307 (1247)
Q Consensus 275 s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggG 307 (1247)
+.++|+|+||+++||++++|++++|.+++.|.|
T Consensus 229 t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 229 DLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999998754
No 3
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.8e-47 Score=462.98 Aligned_cols=297 Identities=27% Similarity=0.439 Sum_probs=271.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC------------------CcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1247)
+++++|||+|+++|.++++.|+||..|++|+.+|+...+..... ..+++|. ...|.+.|+.
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~~ls~ 169 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKF-VSRWSDLMCD 169 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhcccc-chhHHHHHHH
Confidence 46899999999999999999999999999999998654433322 2333332 3579999999
Q ss_pred HHHHHHhhcCCCCC-CCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcC-
Q 000863 65 IAWQAANFVKPDTS-RGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN- 142 (1247)
Q Consensus 65 l~~~A~~~V~~d~~-~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~- 142 (1247)
|+++|+..|.++.. ....+|+.+||+|+|++||++.||++|+|++|+|+++|++||++++||||||++++|+|++++.
T Consensus 170 l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~ 249 (525)
T TIGR02344 170 LALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQ 249 (525)
T ss_pred HHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccccc
Confidence 99999999987642 2347899889999999999999999999999999999999999999999999999999998763
Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 143 ------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 143 ------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
.+.++++++++|++|+++++++|++.||+||+++|+|+++|+++|.++||++++++++.+|+|||++|||++++
T Consensus 250 ~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~ 329 (525)
T TIGR02344 250 TNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVN 329 (525)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcee-eeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000863 217 SIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1247)
Q Consensus 217 sid~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~ 295 (1247)
+++++++..||+ |+.|+++++++ ++|++|+||..+.+|||+|||++..+|+|+||+++||++++++
T Consensus 330 ~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 330 RPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred chhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999875 5899999999999999999999999999999999999999999
Q ss_pred hhhcCeEeeCCCcccccc
Q 000863 296 LSLETSFLADEGATLPKM 313 (1247)
Q Consensus 296 l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++.+||||||+|.++
T Consensus 397 ~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAV 414 (525)
T ss_pred HHhCCCcccCCCHHHHHH
Confidence 999999999999999754
No 4
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.5e-44 Score=441.24 Aligned_cols=297 Identities=23% Similarity=0.335 Sum_probs=268.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHH------------------HHhCCcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELL------------------RAEGIKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl------------------~~~~i~~~~k~~~~~w~~~l~~ 64 (1247)
+++++|||+|++++..+++.|+||..|+.|+.+|+...+. +.+.+++++|...+.|.+.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 4679999999999999999999999999999999764333 2333333333211468899999
Q ss_pred HHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc--
Q 000863 65 IAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~-~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
|+++|+..+.++...+ -.+|+ ++|+|+|++||++.||++++|++|++++.|++|+++++||||+|++++|||++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 249 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEID 249 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccc
Confidence 9999999997532222 25888 7899999999999999999999999999999999999999999999999999885
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
+++.++++++++|++|++++|++|++.||+||+++++|++.|+++|.++||++|+++++.+|+|||++|||++++
T Consensus 250 ~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~ 329 (519)
T TIGR02339 250 AKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVS 329 (519)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeC
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q 000863 217 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 296 (1247)
Q Consensus 217 sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l 296 (1247)
+++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 330 ~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 330 SIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred chhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 58999999999999999999999999999999999999999999
Q ss_pred hhcCeEeeCCCcccccc
Q 000863 297 SLETSFLADEGATLPKM 313 (1247)
Q Consensus 297 ~lE~~~l~ggGa~e~~~ 313 (1247)
+.++++|||||++|.++
T Consensus 397 ~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIEL 413 (519)
T ss_pred hcCCCEeeCCCHHHHHH
Confidence 99999999999999754
No 5
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.5e-44 Score=435.52 Aligned_cols=296 Identities=18% Similarity=0.267 Sum_probs=267.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC--------------------CcCccCCChhhHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG--------------------IKLGKEDSEEDWLGII 62 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~--------------------i~~~~k~~~~~w~~~l 62 (1247)
+++++|||+|++++..+++.|+||..|++|+.+|+...+..... +++++| -...|.+.|
T Consensus 98 tt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk-~~~~~~~~~ 176 (526)
T cd03339 98 TGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSK-IVSRCHRQF 176 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhccc-chhhHHHHH
Confidence 46799999999999999999999999999999988654433322 233332 235688999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc-
Q 000863 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1247)
Q Consensus 63 ~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~- 141 (1247)
+.++++|+..+... .+..+|+ ++|+|+|++||++.||++++|++|+++++|+.||+.++||||+|++++|||++.+
T Consensus 177 s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~ 253 (526)
T cd03339 177 AEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 253 (526)
T ss_pred HHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcccc
Confidence 99999999988642 2235677 7899999999999999999999999999999999999999999999999999764
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEc
Q 000863 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Ii 215 (1247)
+.+.++++++++|++|++.++++|++.|++||+++++|++.|+++|.++||++|+++++.+|+|||++|||+++
T Consensus 254 ~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii 333 (526)
T cd03339 254 KHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIV 333 (526)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEe
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000863 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1247)
Q Consensus 216 ssid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~ 295 (1247)
+++++++...||+|+.|+++.++.+ .++|+||+||+.+.+|||+|||+++.+|+|+||+++||++++++
T Consensus 334 ~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~ 402 (526)
T cd03339 334 PRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRN 402 (526)
T ss_pred cchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988741 36899999999999999999999999999999999999999999
Q ss_pred hhhcCeEeeCCCcccccc
Q 000863 296 LSLETSFLADEGATLPKM 313 (1247)
Q Consensus 296 l~lE~~~l~ggGa~e~~~ 313 (1247)
++.++++|||||++|.++
T Consensus 403 ~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 403 LIRDNRIVYGGGAAEISC 420 (526)
T ss_pred HhhCCCEEeCCCHHHHHH
Confidence 999999999999999754
No 6
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-45 Score=406.54 Aligned_cols=296 Identities=25% Similarity=0.429 Sum_probs=271.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC-----------------hhhHHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS-----------------EEDWLGIITTI 65 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~-----------------~~~w~~~l~~l 65 (1247)
+|+++||||+|..+....++++||..|+..+.+||-..+-...+++++-+.+ ...|.+.++.|
T Consensus 94 tsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~l 173 (527)
T KOG0364|consen 94 TSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNL 173 (527)
T ss_pred eeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhH
Confidence 5889999999999999999999999999999999976554444333222111 27999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCC--
Q 000863 66 AWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ-- 143 (1247)
Q Consensus 66 ~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~-- 143 (1247)
+++|+..|..+ .|..+|+.+|+|+.|||||.+.+|++++||.+.|.+.|.+|.+.|+||||.||++||||.+-+++
T Consensus 174 al~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtn 251 (527)
T KOG0364|consen 174 ALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTN 251 (527)
T ss_pred HHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccc
Confidence 99999999876 45589999999999999999999999999999999999999999999999999999999987643
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCC
Q 000863 144 -----LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSI 218 (1247)
Q Consensus 144 -----~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissi 218 (1247)
-.++..+++-|+||+..++..|+.++||||++||+|++.|++||.++||++++++++.|..||||+|||.|++..
T Consensus 252 ve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rp 331 (527)
T KOG0364|consen 252 VEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRP 331 (527)
T ss_pred eeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccCh
Confidence 467778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcee-eeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhh
Q 000863 219 DNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1247)
Q Consensus 219 d~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~ 297 (1247)
++|.+.+.|+ |+.|++++++++ .|.||..|..|+.|||+|||++.++|+|++|.++||+.++++.+
T Consensus 332 edl~e~dvGt~agLf~~kK~gde-------------yf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~i 398 (527)
T KOG0364|consen 332 EDLPERDVGTGAGLFEVKKIGDE-------------YFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVI 398 (527)
T ss_pred hhCchhccCcccceeeeeccCch-------------hhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhc
Confidence 9999999995 999999999984 79999999999999999999999999999999999999999999
Q ss_pred hcCeEeeCCCcccccc
Q 000863 298 LETSFLADEGATLPKM 313 (1247)
Q Consensus 298 lE~~~l~ggGa~e~~~ 313 (1247)
.+++++|||||+|..+
T Consensus 399 i~PklvPGGGAtEMAv 414 (527)
T KOG0364|consen 399 INPKLVPGGGATEMAV 414 (527)
T ss_pred cCCcccCCccHHHHHH
Confidence 9999999999999743
No 7
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-43 Score=432.31 Aligned_cols=296 Identities=22% Similarity=0.332 Sum_probs=268.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC------------------CcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1247)
+++++||++|++++..+++.|+||..|+.|+.+|+...+..... +++.+|. ...|.+.|++
T Consensus 90 tt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~-~~~~~~~l~~ 168 (517)
T cd03343 90 TTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKG-AEAAKDKLAD 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccc-hhhHHHHHHH
Confidence 46799999999999999999999999999999988654433332 2333332 2468899999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc---
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~--- 141 (1247)
|+++|+..+.++......+|+ ++|+|+|++||+++||++++|++|++++.|+.|++.++||||++++++|||++.+
T Consensus 169 l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~ 247 (517)
T cd03343 169 LVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247 (517)
T ss_pred HHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccce
Confidence 999999999754222236898 7899999999999999999999999999999999999999999999999999875
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccC
Q 000863 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1247)
Q Consensus 142 ----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iiss 217 (1247)
+...++++++++|++|++++|++|++.|++||+++++|++.|+++|.++||++|+++++.+|+|||++|||+++++
T Consensus 248 ~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~ 327 (517)
T cd03343 248 KIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTN 327 (517)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhh
Q 000863 218 IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1247)
Q Consensus 218 id~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~ 297 (1247)
++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||+++.+++|+||.++||++++++++
T Consensus 328 ~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~ 394 (517)
T cd03343 328 IDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADAL 394 (517)
T ss_pred hhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 489999999999999999999999999999999999999999999
Q ss_pred hcCeEeeCCCcccccc
Q 000863 298 LETSFLADEGATLPKM 313 (1247)
Q Consensus 298 lE~~~l~ggGa~e~~~ 313 (1247)
.+++||||||++|..+
T Consensus 395 ~~~~vvpGGG~~e~~l 410 (517)
T cd03343 395 EDGKVVAGGGAVEIEL 410 (517)
T ss_pred hCCCeeeCCCHHHHHH
Confidence 9999999999999753
No 8
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-42 Score=423.04 Aligned_cols=297 Identities=19% Similarity=0.223 Sum_probs=263.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC---CcCccCCC---------------hhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG---IKLGKEDS---------------EEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~---i~~~~k~~---------------~~~w~~~l~~ 64 (1247)
+++++|||+|++++..++++|+||..|+.|+.+|+...+..... +++...+. ...|.+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 46899999999999999999999999999999998765544432 23221110 1257789999
Q ss_pred HHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc--
Q 000863 65 IAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~-~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
|+++|+..++.....+ ..+|+ ++|+|++++||++.||++++|++|+++++|.+||++++|||||+++++|++.+.+
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 241 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG 241 (527)
T ss_pred HHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccc
Confidence 9999999996321122 24788 7899999999999999999999999999999999999999999999999998764
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
++..+++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||++|||++++
T Consensus 242 ~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~ 321 (527)
T cd03335 242 VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS 321 (527)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC------CCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 000863 217 SIDNIS------TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290 (1247)
Q Consensus 217 sid~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal 290 (1247)
+++.++ +..||+|+.|+++++++ ++|++|+||..+.+|||+|||+|+.+|+|+||.++||+
T Consensus 322 ~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal 388 (527)
T cd03335 322 TLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDFMLDEMERSLHDAL 388 (527)
T ss_pred ChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 987653 34899999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCcccccc
Q 000863 291 FAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 291 ~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++++.++++|||||++|.++
T Consensus 389 ~~~~~~~~~~~vvpGGGa~e~~l 411 (527)
T cd03335 389 CVVKRTLESNSVVPGGGAVETAL 411 (527)
T ss_pred HHHHHHhhCCCEeeCCCHHHHHH
Confidence 99999999999999999999753
No 9
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.8e-42 Score=421.83 Aligned_cols=289 Identities=20% Similarity=0.280 Sum_probs=263.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcC---------------------ccCCChhhHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL---------------------GKEDSEEDWLGI 61 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~---------------------~~k~~~~~w~~~ 61 (1247)
+++|+|||+|+++|..++++|+||..|+.|+.+|+...+.....++. ++|. ...|.+.
T Consensus 102 TtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~-~~~~~~~ 180 (533)
T PTZ00212 102 TSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKL-LTVEKDH 180 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccc-cchhHHH
Confidence 46799999999999999999999999999999998765544443332 2221 2468899
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc
Q 000863 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1247)
Q Consensus 62 l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~ 141 (1247)
|++|+++|+..+.. .+|+ ++|+|+|++||++.||++++|+|+++++.| .||++++||||||++++|||++.+
T Consensus 181 l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~ 252 (533)
T PTZ00212 181 FAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIK 252 (533)
T ss_pred HHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCccc
Confidence 99999999999864 3566 779999999999999999999999999987 589999999999999999999886
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCe
Q 000863 142 --------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1247)
Q Consensus 142 --------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~ 213 (1247)
+++.++..+.++|++++++++.+|++.++++|+++++|++.|+++|.++||++|+++++.+|+|||++|||+
T Consensus 253 ~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~ 332 (533)
T PTZ00212 253 IYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAE 332 (533)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCE
Confidence 568889889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 000863 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1247)
Q Consensus 214 Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~ 293 (1247)
++++++++++.+||+|+.|+++.++. ++|++|+||+.+.+|||+|||+++.+|+|+||.++||++++
T Consensus 333 iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv 399 (533)
T PTZ00212 333 IVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVL 399 (533)
T ss_pred EeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887764 58999999999999999999999999999999999999999
Q ss_pred HHhhhcCeEeeCCCcccccc
Q 000863 294 YHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 294 ~~l~lE~~~l~ggGa~e~~~ 313 (1247)
++++.++++||||||+|..+
T Consensus 400 ~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 400 SQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred HHHhhCCCEeeCCCHHHHHH
Confidence 99999999999999999754
No 10
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-42 Score=421.24 Aligned_cols=296 Identities=20% Similarity=0.275 Sum_probs=266.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCC--------------------cCccCCChhhHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGI--------------------KLGKEDSEEDWLGII 62 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i--------------------~~~~k~~~~~w~~~l 62 (1247)
+++++|||+|+++|.++++.|+||..|++|+..|+...+...... ++++| -...|.+.|
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK-~~~~~~~~l 180 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSK-IVSKCHRRF 180 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccc-hhhHHHHHH
Confidence 468999999999999999999999999999999976543333222 22222 124688999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc-
Q 000863 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1247)
Q Consensus 63 ~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~- 141 (1247)
+.++++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|..||+.++||||+|++++||+++.+
T Consensus 181 s~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~ 257 (532)
T TIGR02343 181 AEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 257 (532)
T ss_pred HHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecccccccc
Confidence 99999999988531 2236888 7899999999999999999999999999999999999999999999999999874
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEc
Q 000863 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Ii 215 (1247)
+.+.+++.++++|+++++.++++|++.|++||+++++|++.|+++|.++||.+|+++++.+|+|||++|||.++
T Consensus 258 ~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i 337 (532)
T TIGR02343 258 KHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIV 337 (532)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEe
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000863 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1247)
Q Consensus 216 ssid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~ 295 (1247)
++++++++..||+|+.|+++.++.+ .+++++|+||+.+..|||+|||+|+.+++|+||+++||++++++
T Consensus 338 ~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~ 406 (532)
T TIGR02343 338 PRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRN 406 (532)
T ss_pred cccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752 24899999999999999999999999999999999999999999
Q ss_pred hhhcCeEeeCCCcccccc
Q 000863 296 LSLETSFLADEGATLPKM 313 (1247)
Q Consensus 296 l~lE~~~l~ggGa~e~~~ 313 (1247)
++.++++|||||++|.++
T Consensus 407 ~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 407 LIKNSRIVYGGGAAEISC 424 (532)
T ss_pred HHhCCCEEeCcCHHHHHH
Confidence 999999999999999854
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-42 Score=418.45 Aligned_cols=291 Identities=21% Similarity=0.337 Sum_probs=262.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------------------hhhHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------------------EEDWLGI 61 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------------------~~~w~~~ 61 (1247)
+++++|||+|++++..+++.|+||..|++|+.+|+...+.....++++.... ...+.+.
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 4679999999999999999999999999999999876554444433221110 1347889
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCC---CCceeecCCcEEEeecccccc
Q 000863 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEYQ 138 (1247)
Q Consensus 62 l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk---~M~~~i~nprIlLl~~~Ley~ 138 (1247)
|++|+++|+..+.+ ..|+ ++|+|+|++||++.||++++|++|++++++. .||++++|||||+++++||+.
T Consensus 171 l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 171 FAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred HHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 99999999999965 3466 7899999999999999999999999999865 469999999999999999999
Q ss_pred cCc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhC
Q 000863 139 RVP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1247)
Q Consensus 139 r~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TG 211 (1247)
+.+ +.+..++.++++|++++.+++++|++.|++||+++++|++.|++||.++||+++.+|++.+|+|||++||
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG 323 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 763 4577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHH
Q 000863 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVF 291 (1247)
Q Consensus 212 A~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~ 291 (1247)
|+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||++..+++|+||+++||++
T Consensus 324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~ 390 (522)
T cd03340 324 GSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIM 390 (522)
T ss_pred CEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988864 589999999999999999999999999999999999999
Q ss_pred HHHHhhhcCeEeeCCCcccccc
Q 000863 292 AAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 292 ~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
++++++.+++||||||++|.++
T Consensus 391 ~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 391 IVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred HHHHHhcCCCEEECcCHHHHHH
Confidence 9999999999999999999754
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-41 Score=414.57 Aligned_cols=289 Identities=18% Similarity=0.226 Sum_probs=262.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcC---------------------ccCCChhhHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL---------------------GKEDSEEDWLGI 61 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~---------------------~~k~~~~~w~~~ 61 (1247)
+++++|||+|+++|..++++|+||..|+.|+.+|+...+......++ ++|. ...|.+.
T Consensus 90 TtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~-~~~~~~~ 168 (517)
T cd03336 90 TSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI-LTQDKEH 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc-cchhHHH
Confidence 46899999999999999999999999999999998654443333332 2221 1348899
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc
Q 000863 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1247)
Q Consensus 62 l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~ 141 (1247)
|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++++.+ .||++++||||+|++++|||++++
T Consensus 169 l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~ 240 (517)
T cd03336 169 FAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIK 240 (517)
T ss_pred HHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCccccc
Confidence 99999999999853 4567 789999999999999999999999999876 589999999999999999999886
Q ss_pred C--------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCe
Q 000863 142 N--------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1247)
Q Consensus 142 ~--------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~ 213 (1247)
. .+.+++.+.++|++++++++.+|++.|+++|+++++|++.|++||.++||++|+++++.+|+|||++|||+
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ 320 (517)
T cd03336 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGE 320 (517)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 3 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 000863 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1247)
Q Consensus 214 Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~ 293 (1247)
++++++++++.+||+|+.|++..+++ ++|++|+||+.+.+|||+|||+++.+|+|+||.++||++++
T Consensus 321 ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~ 387 (517)
T cd03336 321 IASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVL 387 (517)
T ss_pred EecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887764 58999999999999999999999999999999999999999
Q ss_pred HHhhhcCeEeeCCCcccccc
Q 000863 294 YHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 294 ~~l~lE~~~l~ggGa~e~~~ 313 (1247)
++++.++++||||||+|.++
T Consensus 388 ~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 388 AQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred HHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999754
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-41 Score=414.90 Aligned_cols=295 Identities=18% Similarity=0.231 Sum_probs=266.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC------------------CcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1247)
+++++|||+|+++|..++++|+||..|++|+.+|+...+..... +++.+| ....|.+.|+.
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK-~~~~~~~~ls~ 162 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSK-VVSQYSSLLAP 162 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccc-cchhHHHHHHH
Confidence 46799999999999999999999999999999998754433333 333333 23578999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCC-CCCceeecCCcEEEeecccccccCc--
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKH-KRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ah-k~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.| ++||++++||||++++|+|++.+.+
T Consensus 163 l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 163 LAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 9999999997532 2347888 789999999999999999999999999999 5999999999999999999998763
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----CHHHHHHHHHcCceeEecCChHHHHHHHHHhC
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~V-----s~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TG 211 (1247)
..+.+++.++++|+++++.++++|++.|++||+++++| ++.|+++|.++||++|+++++.+|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 46888999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCC-ceEEEEecCCCHHHHHHHHHHHHHHH
Q 000863 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR-LGCMVLLRGKCREELKKVKHVVQYAV 290 (1247)
Q Consensus 212 A~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~-~gcTIlLRG~s~~~L~evKr~l~dal 290 (1247)
|+++++++++++.+||+|+.|+++++++ ++|++|+||+.. ..|||+|||+++.+++|+||.++||+
T Consensus 321 a~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl 387 (517)
T TIGR02342 321 CKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDAL 387 (517)
T ss_pred CEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887764 489999999884 89999999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCcccccc
Q 000863 291 FAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 291 ~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++++.++++||||||+|.+.
T Consensus 388 ~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 388 CVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred HHHHHHhhCCCEEECcCHHHHHH
Confidence 99999999999999999999754
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-41 Score=411.94 Aligned_cols=293 Identities=20% Similarity=0.275 Sum_probs=264.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCc-------------------cCCChhhHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLG-------------------KEDSEEDWLGIIT 63 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~-------------------~k~~~~~w~~~l~ 63 (1247)
+++++|||+|+++|..++++|+||..|+.|+.+|+...+.....++.. +|. ...|.+.|+
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~ls 169 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKL-PIDLADQLT 169 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 367999999999999999999999999999999987655444444322 111 136788999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc--
Q 000863 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 64 ~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
+|+++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|++++.|+.||++++||||||++++|++.+++
T Consensus 170 ~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~ 245 (531)
T TIGR02347 170 EIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVN 245 (531)
T ss_pred HHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccC
Confidence 9999999999763 235787 6799999999999999999999999999999999999999999999999999754
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC---EEEecCCCCHHHHHHHHHcCceeEecCChHHHHHH
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALR-------PN---VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERI 206 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~-------pn---VVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRI 206 (1247)
....+++.++.+|++|++.++++|+.++ |+ ||+++++|++.|++||.++||++++++++.+|+||
T Consensus 246 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~i 325 (531)
T TIGR02347 246 SGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERL 325 (531)
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHH
Confidence 4578899999999999999999999977 36 99999999999999999999999999999999999
Q ss_pred HHHhCCeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHH
Q 000863 207 ARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVV 286 (1247)
Q Consensus 207 ar~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l 286 (1247)
|++|||+++++++++++..||+|+.|+++.++. ++|++|+||..+..|||+|||+|+.+|+|+||.+
T Consensus 326 a~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l 392 (531)
T TIGR02347 326 TLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAV 392 (531)
T ss_pred HHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999999999999998875 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 287 QYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 287 ~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+||++++++++.++++||||||+|.++
T Consensus 393 ~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 393 RDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred HHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 999999999999999999999999754
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-41 Score=411.63 Aligned_cols=295 Identities=17% Similarity=0.229 Sum_probs=266.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCcc------------------CCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGK------------------EDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~------------------k~~~~~w~~~l~~ 64 (1247)
.++++||++|++++..+++.|+||..|+.|+.+|+...+.....++.+- |. ...|.+.|+.
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~-~~~~~~~ls~ 161 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKV-VSQYSSLLAP 161 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHHH
Confidence 4679999999999999999999999999999999876554444333222 21 1358899999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCC-CceeecCCcEEEeecccccccCc--
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-MTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~-M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
|+++|+..|.++. .++.+|+ ++|+|.+++||++.||++++|++|+++++|+. ||+.++||||++++|+|||.+.+
T Consensus 162 li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~ 239 (515)
T cd03338 162 IAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMD 239 (515)
T ss_pred HHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccC
Confidence 9999999998642 2247898 78999999999999999999999999999986 59999999999999999998764
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----CHHHHHHHHHcCceeEecCChHHHHHHHHHhC
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~V-----s~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TG 211 (1247)
+.+.+++.++++|+++++.++++|++.|++|||++++| ++.|+++|.++||++|+++++.+|+|||++||
T Consensus 240 ~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tG 319 (515)
T cd03338 240 NNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIG 319 (515)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHC
Confidence 45779999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHH
Q 000863 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAV 290 (1247)
Q Consensus 212 A~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~-~~gcTIlLRG~s~~~L~evKr~l~dal 290 (1247)
|++++++++++...||+|+.|+++++++ ++|++|+||+. +.+|||+|||+++.+++|+||.++||+
T Consensus 320 a~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal 386 (515)
T cd03338 320 CKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDAL 386 (515)
T ss_pred CEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 48999999997 699999999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCcccccc
Q 000863 291 FAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 291 ~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++++.++++|||||++|.+.
T Consensus 387 ~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 387 CVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred HHHHHHhhCCCEEECCCHHHHHH
Confidence 99999999999999999999854
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-40 Score=408.49 Aligned_cols=296 Identities=18% Similarity=0.207 Sum_probs=262.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHh---CCcCc----------------cCCChhhHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE---GIKLG----------------KEDSEEDWLGIIT 63 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~---~i~~~----------------~k~~~~~w~~~l~ 63 (1247)
+++++|||+|+++|.++++.|+||..|+.|+..|+...+.... .+++. +|. ...|.+.|+
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ls 165 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKI-IGLDSDFFS 165 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 4679999999999999999999999999999999865444333 22332 111 124788999
Q ss_pred HHHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc-
Q 000863 64 TIAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1247)
Q Consensus 64 ~l~~~A~~~V~~d~~~~-~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~- 141 (1247)
+|+++|+..++.+...| ..+|+ ++|+|+|++||+..||++++|++|++++.|.+||++++||||+|++++|++.+.+
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~ 244 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMAL 244 (536)
T ss_pred HHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccC
Confidence 99999999996321122 25788 7899999999999999999999999999999999999999999999999999764
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEc
Q 000863 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Ii 215 (1247)
++...++.+.++|++++.+.+++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||+++
T Consensus 245 ~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii 324 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLV 324 (536)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------CCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHH
Q 000863 216 PSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289 (1247)
Q Consensus 216 ssid~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~da 289 (1247)
++++.+ ++..||+|+.|++++++. ++|++|+||..+.+|||+|||+|+.+++|+||.++||
T Consensus 325 ~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DA 391 (536)
T TIGR02340 325 STLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDFMLDEMERSLHDA 391 (536)
T ss_pred cchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 998655 345699999999999876 4799999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCeEeeCCCcccccc
Q 000863 290 VFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 290 l~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
++++++++.++++|||||++|.+.
T Consensus 392 l~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 392 LCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred HHHHHHHhcCCCEEECCCHHHHHH
Confidence 999999999999999999999754
No 17
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-41 Score=408.56 Aligned_cols=263 Identities=25% Similarity=0.412 Sum_probs=237.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc------------------CccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK------------------LGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~------------------~~~k~~~~~w~~~l~~ 64 (1247)
+++++|||+|+++|..++++|+||..|++|+.+|+...+.....++ +++|. .+.|.+.|++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~-~~~~~~~ls~ 169 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKF-VSRWSDLMCN 169 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCc-chhHHHHHHH
Confidence 4789999999999999999999999999999999876444333332 32332 2579999999
Q ss_pred HHHHHHhhcCCCCCC-CCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCC
Q 000863 65 IAWQAANFVKPDTSR-GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~-~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~ 143 (1247)
|+++|+..+.++... +..+|+++||+|+|++||++.||++++|+||+|+++|++||++++||||||++|+|||
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~------ 243 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY------ 243 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce------
Confidence 999999999876432 2368998899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCC
Q 000863 144 LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIST 223 (1247)
Q Consensus 144 ~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~ 223 (1247)
||+++++|++.|+++|.++||++|+++++.+|+|||++|||+++++++++++
T Consensus 244 ----------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~ 295 (480)
T cd03337 244 ----------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTE 295 (480)
T ss_pred ----------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcee-eeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeE
Q 000863 224 TRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSF 302 (1247)
Q Consensus 224 ~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~ 302 (1247)
+.||+ |+.|+++++++ ++|+||+||+.+.+|||+|||++..+|+|+||+++||++++++++.++++
T Consensus 296 ~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~ 362 (480)
T cd03337 296 SDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKL 362 (480)
T ss_pred HHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999 67777777664 58999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcccccc
Q 000863 303 LADEGATLPKM 313 (1247)
Q Consensus 303 l~ggGa~e~~~ 313 (1247)
|||||++|.++
T Consensus 363 vpGGGa~E~~l 373 (480)
T cd03337 363 VPGGGATEMAV 373 (480)
T ss_pred EeCCCHHHHHH
Confidence 99999999754
No 18
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-40 Score=405.34 Aligned_cols=292 Identities=18% Similarity=0.307 Sum_probs=263.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCC----C----------------hhhHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKED----S----------------EEDWLGII 62 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~----~----------------~~~w~~~l 62 (1247)
+++|+|||+|++++..+++.|+||..|++|+.+|+...+.....++.+-+. + ...+.+.|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 468999999999999999999999999999999987655444333322210 0 13467889
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCC---CCceeecCCcEEEeeccccccc
Q 000863 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEYQR 139 (1247)
Q Consensus 63 ~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk---~M~~~i~nprIlLl~~~Ley~r 139 (1247)
++|+++|+..+.++ .+|+ ++|+|+|++||++.||++++|++|++++++. .||++++||||||++++||+.+
T Consensus 172 ~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 245 (522)
T TIGR02345 172 SKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKA 245 (522)
T ss_pred HHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCc
Confidence 99999999999752 4777 7899999999999999999999999998865 4699999999999999999987
Q ss_pred Cc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCC
Q 000863 140 VP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 212 (1247)
Q Consensus 140 ~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA 212 (1247)
.+ +.+..++.+++.|++++++++++|++.|++||+|+++|++.+++||.++||++++++++.+|+|||++|||
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga 325 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGG 325 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 64 45888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000863 213 LITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFA 292 (1247)
Q Consensus 213 ~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~ 292 (1247)
+|+++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+++|+||.++||+++
T Consensus 326 ~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~ 392 (522)
T TIGR02345 326 SIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMI 392 (522)
T ss_pred eEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888765 5899999999999999999999999999999999999999
Q ss_pred HHHhhhcCeEeeCCCcccccc
Q 000863 293 AYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 293 ~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++.++.+|||||++|...
T Consensus 393 ~~~~~~~~~vvpGGG~~e~~l 413 (522)
T TIGR02345 393 VRRALKARKIVAGGGAIEMEL 413 (522)
T ss_pred HHHHhcCCCEEeCCCHHHHHH
Confidence 999999999999999999753
No 19
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-41 Score=368.02 Aligned_cols=290 Identities=19% Similarity=0.310 Sum_probs=262.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHh----------------------CCcCccCCChhhHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE----------------------GIKLGKEDSEEDWLG 60 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~----------------------~i~~~~k~~~~~w~~ 60 (1247)
+|+|+||+|+|++++.+++.|+|+.-|+.++++|.-..+.+.+ .+.+++|. .....+
T Consensus 95 TSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl-I~~ek~ 173 (543)
T KOG0361|consen 95 TSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL-IRQEKE 173 (543)
T ss_pred eeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh-hhhhHH
Confidence 5899999999999999999999999999999998765444444 44444443 245678
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCC---CCceeecCCcEEEeeccccc
Q 000863 61 IITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEY 137 (1247)
Q Consensus 61 ~l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk---~M~~~i~nprIlLl~~~Ley 137 (1247)
+|++++++|+..+.. ..|. ++|-|||++||++.||.+|+||.|.|.+... +.|+++.|||||+|+..||.
T Consensus 174 fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELEl 246 (543)
T KOG0361|consen 174 FFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELEL 246 (543)
T ss_pred HHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeee
Confidence 999999999998863 3445 8899999999999999999999999998865 46899999999999999998
Q ss_pred ccCc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHh
Q 000863 138 QRVP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCT 210 (1247)
Q Consensus 138 ~r~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~T 210 (1247)
.-.. ...+.++.++..|+..|...+++|...|.||||..-.|.++|.+||++++|.+..||..++|.|+..++
T Consensus 247 KaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~ac 326 (543)
T KOG0361|consen 247 KAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQAC 326 (543)
T ss_pred cccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhc
Confidence 6321 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 000863 211 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290 (1247)
Q Consensus 211 GA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal 290 (1247)
|+.|.++..++.+..||+|+.|++++++. .+|-+|+|||....||++|||+-++.++|++|.++||+
T Consensus 327 GGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAI 393 (543)
T KOG0361|consen 327 GGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAI 393 (543)
T ss_pred CcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHH
Confidence 99999999999999999999999998875 37999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCcccccc
Q 000863 291 FAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 291 ~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++++++++.++|+||||+|+++
T Consensus 394 mIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 394 MIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred HHHHHHhccCcEeeCCceeeehH
Confidence 99999999999999999999875
No 20
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-39 Score=394.12 Aligned_cols=290 Identities=19% Similarity=0.241 Sum_probs=260.5
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCC--------------------ChhhHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKED--------------------SEEDWLGII 62 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~--------------------~~~~w~~~l 62 (1247)
+++|+|||+|+++|..+++.|+||..|++|+.+|+...+.....++++... -...|.+.|
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~ 170 (519)
T TIGR02341 91 TSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHF 170 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 467999999999999999999999999999999987655444333322211 124688999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcC
Q 000863 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN 142 (1247)
Q Consensus 63 ~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~ 142 (1247)
+.++++|+..++. ..|+ +.|+|.|++||+++||++++|+|+++.+.| .||++++||||++++++||+.+++.
T Consensus 171 s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~ 242 (519)
T TIGR02341 171 AQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKV 242 (519)
T ss_pred HHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCcccc
Confidence 9999999999853 1256 569999999999999999999999999877 6899999999999999999987653
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeE
Q 000863 143 --------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 214 (1247)
Q Consensus 143 --------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~I 214 (1247)
++..+..+.+.|++++++++++|++.|+++|+++++|++.|+++|.++||+++++++..+|+|||++|||.+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~i 322 (519)
T TIGR02341 243 FGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEI 322 (519)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 466788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 000863 215 TPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 294 (1247)
Q Consensus 215 issid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~ 294 (1247)
+++++.+++.+||+|+.|+++.++. ++|++|+||+.+..|||+|||+|+.+|+|+||.++||+++++
T Consensus 323 i~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~ 389 (519)
T TIGR02341 323 VSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLS 389 (519)
T ss_pred ecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877764 589999999999999999999999999999999999999999
Q ss_pred HhhhcCeEeeCCCcccccc
Q 000863 295 HLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 295 ~l~lE~~~l~ggGa~e~~~ 313 (1247)
+++.++.+||||||+|.+.
T Consensus 390 ~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 390 QTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred HHHhCCCEEeCCCHHHHHH
Confidence 9999999999999999854
No 21
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-37 Score=379.17 Aligned_cols=292 Identities=15% Similarity=0.210 Sum_probs=259.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcC-c--cCCCh----------------hhHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL-G--KEDSE----------------EDWLGIIT 63 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~-~--~k~~~----------------~~w~~~l~ 63 (1247)
+++|+|||+|++++..+++.|+||..|++|+.+|+...+.....++. . ...+. .. .+.|+
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~ls 171 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGN-EDFLA 171 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCch-HHHHH
Confidence 46899999999999999999999999999999998765544444332 1 11110 12 67899
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc--
Q 000863 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 64 ~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
+|+++|+..+.++. .+.+|+ +.|+|+|++||+.+||++++|++|+++.. .||+.++||||+|+++||++.+.+
T Consensus 172 ~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~ 246 (531)
T TIGR02346 172 QLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETK 246 (531)
T ss_pred HHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCc
Confidence 99999999997642 236788 67999999999999999999999999954 589999999999999999999765
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
+....+..+...|+++++.++++|++.|++||+++++|++.|+++|.++||.+|++++..+|+|||++|||++++
T Consensus 247 ~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~ 326 (531)
T TIGR02346 247 GTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLA 326 (531)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEec
Confidence 357778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000863 217 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP-RRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1247)
Q Consensus 217 sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~-~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~ 295 (1247)
++++++..+||+|+.|++++++. +.|.+|++|. .+..|||+|||+++.+++|+||.++||++++++
T Consensus 327 ~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ 393 (531)
T TIGR02346 327 RLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKA 393 (531)
T ss_pred ccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 3699999998 478999999999999999999999999999999
Q ss_pred hhhcCeEeeCCCcccccc
Q 000863 296 LSLETSFLADEGATLPKM 313 (1247)
Q Consensus 296 l~lE~~~l~ggGa~e~~~ 313 (1247)
++.++.+|||||++|.++
T Consensus 394 ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 394 LVKDNRFLPGAGATEIEL 411 (531)
T ss_pred HhcCCCEEECcCHHHHHH
Confidence 999999999999999754
No 22
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.2e-38 Score=380.19 Aligned_cols=271 Identities=19% Similarity=0.270 Sum_probs=241.0
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcC-------------------ccCCChhhHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL-------------------GKEDSEEDWLGIIT 63 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~-------------------~~k~~~~~w~~~l~ 63 (1247)
.++++||++|+++|.++++.|+||..|+.||.+|+...+......+. ++|. ...|.+.|+
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~-~~~~~~~l~ 165 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKL-HADLADQLT 165 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCccc-chhHHHHHH
Confidence 46799999999999999999999999999999998665444433322 2221 246889999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCC
Q 000863 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1247)
Q Consensus 64 ~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~ 143 (1247)
+|+++|+..+.++ ++.+|+ +.|+|+|++||+..||++++|++|+++++|+.||++++||||+|++++|++.+.+..
T Consensus 166 ~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~ 241 (484)
T cd03342 166 EIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 241 (484)
T ss_pred HHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccC
Confidence 9999999999863 347888 789999999999999999999999999999999999999999999999999877532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCC
Q 000863 144 LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIST 223 (1247)
Q Consensus 144 ~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~ 223 (1247)
.. +. .+||+++++|++.|+++|.++||++|+++++.+|+|||++|||+++++++++++
T Consensus 242 ~~-~~---------------------~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~ 299 (484)
T cd03342 242 SG-FF---------------------YSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSP 299 (484)
T ss_pred cE-EE---------------------EEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCCh
Confidence 11 10 139999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEe
Q 000863 224 TRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFL 303 (1247)
Q Consensus 224 ~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l 303 (1247)
..||+|+.|+++.++. ++|+||+||..+..|||+|||+|+.+|+|+||+++||++++++++.++++|
T Consensus 300 ~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 300 ECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred hhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 9999999999988865 479999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 000863 304 ADEGATLPKM 313 (1247)
Q Consensus 304 ~ggGa~e~~~ 313 (1247)
|||||+|.++
T Consensus 367 pGGGa~e~~l 376 (484)
T cd03342 367 PGAGAFEVAL 376 (484)
T ss_pred eCCCHHHHHH
Confidence 9999999854
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.1e-37 Score=371.57 Aligned_cols=259 Identities=22% Similarity=0.297 Sum_probs=236.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC------------------CcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1247)
+++++||++|++++..++++|+||..|++|+.+|+...+..... +++.+|. ...|.+.|++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKL-VSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccc-cccchHHHHH
Confidence 36799999999999999999999999999999988654443333 3333332 2459999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCCH
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL 144 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~~ 144 (1247)
++++|+..+.++.. .+|. ++|+|++++||++.||++++|++|+|++.|+.|++.++||||+|++++|++
T Consensus 162 l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------- 230 (464)
T ss_pred HHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------
Confidence 99999999987542 4555 889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCCC
Q 000863 145 ASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTT 224 (1247)
Q Consensus 145 ~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~~ 224 (1247)
||+++++|++.|+++|.++||++|+++++.+|+|||++|||++++++++++..
T Consensus 231 ---------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~ 283 (464)
T cd00309 231 ---------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPE 283 (464)
T ss_pred ---------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEee
Q 000863 225 RLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLA 304 (1247)
Q Consensus 225 ~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ 304 (1247)
.||+|+.|++.+++. ++|++|+||+...+|||+|||++..+|+|+||+++||++++++++.+++|||
T Consensus 284 ~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vp 350 (464)
T cd00309 284 DLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVP 350 (464)
T ss_pred cCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999875 5899999999899999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 000863 305 DEGATLPKM 313 (1247)
Q Consensus 305 ggGa~e~~~ 313 (1247)
|||++|...
T Consensus 351 GGGa~E~~l 359 (464)
T cd00309 351 GGGAAEIEL 359 (464)
T ss_pred CCcHHHHHH
Confidence 999999753
No 24
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-36 Score=369.74 Aligned_cols=288 Identities=26% Similarity=0.378 Sum_probs=260.2
Q ss_pred cceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHh-----------------CCcCccCCChhhHHHHHHHHH
Q 000863 4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE-----------------GIKLGKEDSEEDWLGIITTIA 66 (1247)
Q Consensus 4 ~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~-----------------~i~~~~k~~~~~w~~~l~~l~ 66 (1247)
++++||++|++++..++++|+||..|+.|+..++...+.... .+.++++ -...|.+.|++++
T Consensus 65 s~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k-~~~~~~~~l~~li 143 (485)
T PF00118_consen 65 SVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSK-ISSSWSDHLSKLI 143 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTS-CGGGCHHHHHHHH
T ss_pred eeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhccccccc-ccccchhhhhhhH
Confidence 578999999999999999999999999999998864333333 2333333 1368999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccC------
Q 000863 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140 (1247)
Q Consensus 67 ~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~------ 140 (1247)
++|+..+..+ +|+ +.++|+++.||+.+||++++|++|++++++..||++++||||++++++|++.+.
T Consensus 144 ~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~~ 216 (485)
T PF00118_consen 144 VDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEIR 216 (485)
T ss_dssp HHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEEE
T ss_pred HHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccccccccc
Confidence 9999555432 667 459999999999999999999999999999999999999999999999999976
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCC
Q 000863 141 PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDN 220 (1247)
Q Consensus 141 ~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~ 220 (1247)
.+....++.+.++|+++++.++++|.+.|++|||++++|++.|+++|.++||.++.+|++.+|+|||++|||.+++++++
T Consensus 217 ~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~ 296 (485)
T PF00118_consen 217 ITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDD 296 (485)
T ss_dssp ESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGG
T ss_pred hhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEeccccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEE--cCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 000863 221 ISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE--GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSL 298 (1247)
Q Consensus 221 L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fe--gc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~l 298 (1247)
+++..+|+|+.+++..+++ ++|++|+ +|.....|||+|||++..+++++||.+++|++++++++.
T Consensus 297 l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~ 363 (485)
T PF00118_consen 297 LSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALK 363 (485)
T ss_dssp STGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 9988899999999888875 5899999 699999999999999999999999999999999999999
Q ss_pred cCeEeeCCCccccc
Q 000863 299 ETSFLADEGATLPK 312 (1247)
Q Consensus 299 E~~~l~ggGa~e~~ 312 (1247)
++.+|||||++|..
T Consensus 364 ~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 364 DGGVVPGGGATELH 377 (485)
T ss_dssp SSEEEETTTHHHHH
T ss_pred CCceeecCcchhhh
Confidence 99999999999974
No 25
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=339.24 Aligned_cols=297 Identities=18% Similarity=0.247 Sum_probs=264.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH------------------HHHHHhCCcCccCCChhhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS------------------ELLRAEGIKLGKEDSEEDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~------------------qLl~~~~i~~~~k~~~~~w~~~l~~ 64 (1247)
.|+|++||.||..+..++++|+||..|+..+..|... +|++.+.+++++|. .+++...|++
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKv-vSq~s~llap 179 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKV-VSQYSSLLAP 179 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHH-HHhhccccch
Confidence 5889999999999999999999999999999988653 46677777777765 2466667999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc---
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~--- 141 (1247)
++++|+..|... ....+.|+ +.|||.|..||.++|+++|+|+||++......-|++++++||.+++|-|..+|+.
T Consensus 180 mAVdAV~kv~dp-~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen 257 (534)
T KOG0358|consen 180 MAVDAVLKVIDP-ENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMEN 257 (534)
T ss_pred HHHHHHHhccCc-ccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCccc
Confidence 999999987532 23456888 6799999999999999999999999998766689999999999999999999873
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----CHHHHHHHHHcCceeEecCChHHHHHHHHHhCC
Q 000863 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 212 (1247)
Q Consensus 142 ----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~V-----s~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA 212 (1247)
+.+..+|.+++.|+.||.+++.+|++.|+||+|+||+| +++|++||.+.+|+||..+.++++|.|++.+|+
T Consensus 258 ~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c 337 (534)
T KOG0358|consen 258 QIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGC 337 (534)
T ss_pred ceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCC
Confidence 67999999999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred eEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHH
Q 000863 213 LITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAVF 291 (1247)
Q Consensus 213 ~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~-~~gcTIlLRG~s~~~L~evKr~l~dal~ 291 (1247)
.++.++|.+++.+||+++.+++..-. |+ .+++.+.|+.+ ..+|||++||++.-+|+|.+|.++||+|
T Consensus 338 ~Pia~id~f~~d~Lg~adlveE~~~~------G~------gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALC 405 (534)
T KOG0358|consen 338 KPIADIDHFTADKLGSADLVEETDSS------GE------GKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALC 405 (534)
T ss_pred eecchhhhcChhhcCcchhhhhcccC------CC------ccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhH
Confidence 99999999999999999988754221 21 27899999987 6899999999999999999999999999
Q ss_pred HHHHhhhcCeEeeCCCccccccc
Q 000863 292 AAYHLSLETSFLADEGATLPKMR 314 (1247)
Q Consensus 292 ~~~~l~lE~~~l~ggGa~e~~~~ 314 (1247)
+++++.+...+++|||+.|++..
T Consensus 406 VirCLvk~r~li~GGGapEieia 428 (534)
T KOG0358|consen 406 VIRCLVKKRALIAGGGAPEIEIA 428 (534)
T ss_pred HHHhhhhccceecCCCCcchHHH
Confidence 99999999999999999988643
No 26
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=346.96 Aligned_cols=293 Identities=17% Similarity=0.253 Sum_probs=270.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHH---------------HHHhCCcCccCCChhhHHHHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSEL---------------LRAEGIKLGKEDSEEDWLGIITTIAW 67 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qL---------------l~~~~i~~~~k~~~~~w~~~l~~l~~ 67 (1247)
+|+|+|.||++++|...+..|+||..|..|+..|....| +..+..++.+|.+ ..-.+.++++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~-~~la~~lt~~vv 170 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVH-AELADVLTPIVV 170 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCccc-HHHHhHhHHHHH
Confidence 688999999999999999999999999999999876543 4445556666654 567899999999
Q ss_pred HHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc------
Q 000863 68 QAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP------ 141 (1247)
Q Consensus 68 ~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~------ 141 (1247)
+|+..+++ ..+.+|+ .+|+|.+..-++..|+.+|+|+|++++..|..||++++|+-||+++.+|||+|++
T Consensus 171 ~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsgff 246 (520)
T KOG0359|consen 171 DSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFF 246 (520)
T ss_pred hhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchh
Confidence 99999983 3567999 8999999999999999999999999999999999999999999999999999986
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----EEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 142 -NQLASFNTLLQQENDHLKMVISKIEALRPN----VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 142 -~~~~sle~ii~qE~e~L~~~V~rI~~~~pn----VVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
+...+-+.+...|++|+.+.|.+|+.++-. ||+.||+|++..++.|++.||.+++|.|+..|||+..+||+..++
T Consensus 247 Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~n 326 (520)
T KOG0359|consen 247 YSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVN 326 (520)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceec
Confidence 246677889999999999999999998765 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q 000863 217 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 296 (1247)
Q Consensus 217 sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l 296 (1247)
|+|+|++..||+|+.+++.++|+| .|+|+|+|+++..||||++|++.+.+..+|.+++|++.++++.
T Consensus 327 svddLtp~~LG~aglVye~tlGEE-------------kfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~nt 393 (520)
T KOG0359|consen 327 SVDDLTPDYLGYAGLVYEYTLGEE-------------KFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNT 393 (520)
T ss_pred ccccCChhhccccceeEEeeccce-------------eeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999985 7999999999999999999999999999999999999999999
Q ss_pred hhcCeEeeCCCcccccc
Q 000863 297 SLETSFLADEGATLPKM 313 (1247)
Q Consensus 297 ~lE~~~l~ggGa~e~~~ 313 (1247)
+.+..+++|+|+.+.+.
T Consensus 394 l~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 394 LEDKCGIPGAGAFEVAL 410 (520)
T ss_pred hhhcccccCchHHHHHH
Confidence 99999999999998753
No 27
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=2.5e-36 Score=327.75 Aligned_cols=207 Identities=33% Similarity=0.469 Sum_probs=193.0
Q ss_pred HHHHHhCCcCccCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCC
Q 000863 40 ELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM 119 (1247)
Q Consensus 40 qLl~~~~i~~~~k~~~~~w~~~l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M 119 (1247)
.|++.+.+++.+|. ..|.+.|++++++|+..+.++.. ++..+||+|++++||++.||++++|++|+|+++|+.|
T Consensus 3 ~l~~ia~ts~~sk~--~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 3 LLLQVATTSLNSKL--SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred HHHHHHHHHhccch--hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 35556666777775 78999999999999999987432 5556899999999999999999999999999999999
Q ss_pred ceeecCCcEEEeecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC
Q 000863 120 TSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1247)
Q Consensus 120 ~~~i~nprIlLl~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk 199 (1247)
|++++||||||++++||| |||++++|++.|+++|.++||++|++++
T Consensus 77 ~~~~~n~~Ill~~~~le~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~ 122 (209)
T cd03333 77 PKRLENAKILLLDCPLEY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVK 122 (209)
T ss_pred CeEcCCCcEEEEeCCeeE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCC
Confidence 999999999999999998 9999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCeEccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHH
Q 000863 200 RPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREEL 279 (1247)
Q Consensus 200 ~~~LeRIar~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L 279 (1247)
+.+|+|||++|||++++++++++.+.||+|+.|+++++++ ++|++|+||..+.+|||+|||++..+|
T Consensus 123 ~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l 189 (209)
T cd03333 123 KEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVEL 189 (209)
T ss_pred HHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHH
Confidence 9999999999999999999999999999999999998875 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 000863 280 KKVKHVVQYAVFAAYHLSLE 299 (1247)
Q Consensus 280 ~evKr~l~dal~~~~~l~lE 299 (1247)
+|+||+++||++++++++++
T Consensus 190 ~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 190 DEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999864
No 28
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.8e-36 Score=361.51 Aligned_cols=262 Identities=17% Similarity=0.235 Sum_probs=233.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCc---cCCCh---------------hhHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLG---KEDSE---------------EDWLGIITT 64 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~---~k~~~---------------~~w~~~l~~ 64 (1247)
+++++|||+|++++..+++.|+||..|++|+.+|+...+.....+... ...+. ..|.+.|++
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~ 162 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHH
Confidence 467999999999999999999999999999999987655444443321 11110 137889999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCCH
Q 000863 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL 144 (1247)
Q Consensus 65 l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~~ 144 (1247)
|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|+++.. .|+++++||||+|++++|++
T Consensus 163 l~~~a~~~~~~~~--~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~------- 230 (472)
T cd03341 163 LVAEACISVLPEN--IGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI------- 230 (472)
T ss_pred HHHHHHHHHhhcc--CCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-------
Confidence 9999999998642 247888 78999999999999999999999988765 45699999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCCC
Q 000863 145 ASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTT 224 (1247)
Q Consensus 145 ~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~~ 224 (1247)
|++||+++++|++.|+++|.++||++++++++.+|+|||++|||++++++++++..
T Consensus 231 ------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~ 286 (472)
T cd03341 231 ------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPE 286 (472)
T ss_pred ------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHh
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEe
Q 000863 225 RLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFL 303 (1247)
Q Consensus 225 ~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~-~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l 303 (1247)
.||+|+.|+++++++ +.|++|+||.. ..+|||+|||+++.+++|+||.++||++++++++.++++|
T Consensus 287 ~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vV 353 (472)
T cd03341 287 EIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFV 353 (472)
T ss_pred HCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999998864 58999999987 8999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 000863 304 ADEGATLPKM 313 (1247)
Q Consensus 304 ~ggGa~e~~~ 313 (1247)
||||++|...
T Consensus 354 pGGG~~e~~l 363 (472)
T cd03341 354 PGAGATEIEL 363 (472)
T ss_pred eCcCHHHHHH
Confidence 9999999753
No 29
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=342.21 Aligned_cols=295 Identities=19% Similarity=0.199 Sum_probs=266.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH-------------------HHHHHhCCcCccCCChhhHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS-------------------ELLRAEGIKLGKEDSEEDWLGIIT 63 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~-------------------qLl~~~~i~~~~k~~~~~w~~~l~ 63 (1247)
.|++++|+||+++|.++...++||..++.||+.|+.. .|+..+..++++|.- ..-.++++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i-~~ds~~f~ 172 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKII-GMDSDFFT 172 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceec-ccchHHHH
Confidence 4789999999999999999999999999999999875 355556666666642 34468999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc--
Q 000863 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1247)
Q Consensus 64 ~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~-- 141 (1247)
.++++|+..++.-..+|....+-+-|.|.|-+|++..||.++.|+.+...++...||.+++|+||++++|.|.-.+..
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 999999998876444566777778899999999999999999999999999999999999999999999999877653
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEcc
Q 000863 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1247)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iis 216 (1247)
..+..++.+.+.|.+..+..+++|++.|+||||++|+|++.+++||.++|+++|+|+++.+|+|||++|||++++
T Consensus 253 v~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~s 332 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLS 332 (545)
T ss_pred ceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeee
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------CCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 000863 217 SIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290 (1247)
Q Consensus 217 sid~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal 290 (1247)
|+.++ .+..+|+|+.|.+++|++ +.++.+.|.+.. .|+|+|||++...++|++|.++|++
T Consensus 333 Sla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL 398 (545)
T KOG0360|consen 333 SLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASIILRGANDFMLDEMERSLHDAL 398 (545)
T ss_pred hhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHH
Confidence 99865 467899999999998887 589999997776 9999999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCccccc
Q 000863 291 FAAYHLSLETSFLADEGATLPK 312 (1247)
Q Consensus 291 ~~~~~l~lE~~~l~ggGa~e~~ 312 (1247)
++++..+.++++|+||||+|..
T Consensus 399 ~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 399 CVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred HHHHHHhccCccccCccHHHHH
Confidence 9999999999999999999964
No 30
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=325.91 Aligned_cols=288 Identities=19% Similarity=0.263 Sum_probs=258.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH---------------------HHHHHhCCcCccCCChhhHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS---------------------ELLRAEGIKLGKEDSEEDWLGI 61 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~---------------------qLl~~~~i~~~~k~~~~~w~~~ 61 (1247)
+|+++||+||+++|++++..++||..|+.||++|... .|++.+.+.+++|. -..-.++
T Consensus 95 TSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKi-Lsq~keh 173 (527)
T KOG0363|consen 95 TSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKI-LSQDKEH 173 (527)
T ss_pred eehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence 5889999999999999999999999999999998754 34555555555553 1355789
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCc
Q 000863 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1247)
Q Consensus 62 l~~l~~~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~ 141 (1247)
|+.|+++|+..++- .-|+ +.|+|.|+.||++.||++=+|++++|.+- -..|++++||||||-+.+++..|+.
T Consensus 174 FaelavdAV~rLkG------s~nL-~~IqIIK~~Gg~l~dSfLDeGFlL~K~ig-v~qpkriena~iLIANT~mDtDKvK 245 (527)
T KOG0363|consen 174 FAELAVDAVLRLKG------STNL-EAIQIIKKLGGKLEDSFLDEGFLLDKKIG-VNQPKRIENAKILIANTPMDTDKVK 245 (527)
T ss_pred HHHHHHHHHHHhcC------CCCc-cceeeehhcCCccccccccccceeccccC-CCCcccccccceEEecCCCccccee
Confidence 99999999998874 3345 56999999999999999999999999975 3679999999999999999998763
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCe
Q 000863 142 --------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1247)
Q Consensus 142 --------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~ 213 (1247)
+....+.++-..|++-++..|+||...|+|+.+...-|-++-.++|..+||+.|.+..-+-+||++.+||+.
T Consensus 246 vfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGe 325 (527)
T KOG0363|consen 246 VFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGE 325 (527)
T ss_pred eecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccce
Confidence 446667777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 000863 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1247)
Q Consensus 214 Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~ 293 (1247)
|++.+|+....++|+|+.++..-+++ ++++.|.||.-.-.|||+|||++.++|+|.+|+++||+++.
T Consensus 326 I~STFd~p~~~klG~C~~IeeimiGe-------------d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVL 392 (527)
T KOG0363|consen 326 IVSTFDNPELVKLGECDLIEEIMIGE-------------DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVL 392 (527)
T ss_pred eeeccCCcchhccccchhhHHHhcCc-------------cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777776 48999999998889999999999999999999999999999
Q ss_pred HHhhhcCeEeeCCCccccc
Q 000863 294 YHLSLETSFLADEGATLPK 312 (1247)
Q Consensus 294 ~~l~lE~~~l~ggGa~e~~ 312 (1247)
-....|++++.|||+.|+-
T Consensus 393 aqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 393 AQTVKESRVVLGGGCSEML 411 (527)
T ss_pred HHHhccceeeecCCcHHHH
Confidence 9999999999999999863
No 31
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=349.51 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=260.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------------hhhHHHHHHHHHH
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------------EEDWLGIITTIAW 67 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------------~~~w~~~l~~l~~ 67 (1247)
.++++||++|+++|..+++.|+||..|+.|+.+|....+.....++.+...+ ...+ +.|+.|++
T Consensus 86 TtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~-~~i~~lv~ 164 (524)
T COG0459 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSD-EEIGELVV 164 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccCh-HHHHHHHH
Confidence 4689999999999999999999999999999999876544443332222111 1345 89999999
Q ss_pred HHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEee-ccCCCCCc-eeecCCcEEEeecccccccCc----
Q 000863 68 QAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTK-NIKHKRMT-SQYRNPRLLILGGALEYQRVP---- 141 (1247)
Q Consensus 68 ~A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~K-n~ahk~M~-~~i~nprIlLl~~~Ley~r~~---- 141 (1247)
+|+..|..... |+ +.|++.|..||...|+++++|++|+| .+.|..|| +.++||+|||++++|++.++.
T Consensus 165 ~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e 238 (524)
T COG0459 165 EAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLE 238 (524)
T ss_pred HHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcce
Confidence 99999986421 67 78999999999999999999999999 78999999 899999999999999999874
Q ss_pred ---CCHHHHHHHHHHHH-HHHHHHHHHHHhcCCC-EEEecCCCCHHHHHHHHHcCceeEecCChHHH-HHHHHHhCCeEc
Q 000863 142 ---NQLASFNTLLQQEN-DHLKMVISKIEALRPN-VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLL-ERIARCTGALIT 215 (1247)
Q Consensus 142 ---~~~~sle~ii~qE~-e~L~~~V~rI~~~~pn-VVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~L-eRIar~TGA~Ii 215 (1247)
+....|..|.++|+ ++|..+|.+|++.+.| |++++++|++.+++||.+.+|+++++|++++| +||+++|||.++
T Consensus 239 ~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v 318 (524)
T COG0459 239 IVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIV 318 (524)
T ss_pred eEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEE
Confidence 34568888899999 9999999999999999 99999999999999999999999999999999 899999999999
Q ss_pred cCCCCCCCCCcee--eeEEEEEEeccccccccccCCCCcceEEEEEcCCC--CceEEEEecCCCHHHHHHHHHHHHHHHH
Q 000863 216 PSIDNISTTRLGH--CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR--RLGCMVLLRGKCREELKKVKHVVQYAVF 291 (1247)
Q Consensus 216 ssid~L~~~~LG~--C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~--~~gcTIlLRG~s~~~L~evKr~l~dal~ 291 (1247)
+.++++++..+|. |+.|+..+++++ .+.+|++|.. +..|||+|||+++.+++|.||.++|||+
T Consensus 319 ~~~~d~t~~~~G~~~~~~ve~~~~~~~-------------~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~ 385 (524)
T COG0459 319 SVLKDLTTIVLGEGAAGLVEETKTGDY-------------DMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALN 385 (524)
T ss_pred eecccCceeecCccccceEEEeeccch-------------hhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHH
Confidence 9999999999999 999999888763 6889999985 7899999999999999999999999999
Q ss_pred HHHHhhhcCeEeeCCCcccccc
Q 000863 292 AAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 292 ~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
++++++.++.+|+|||++|.+.
T Consensus 386 ~~~~ave~g~iV~GGGa~e~~~ 407 (524)
T COG0459 386 VVRAAVEEGKIVPGGGAAEIEA 407 (524)
T ss_pred HHHHHHhcCCeEeCCCHHHHHH
Confidence 9999999999999999999753
No 32
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=1.7e-30 Score=317.40 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=224.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||||+++|..+++.|+||..|+.|+.+|+...+...+.++.+.+.. ...+.+.|++|+++|+..+
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v 168 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKV 168 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999977665555544332210 1246788999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCc-ceeEeeEEEeeccCCCC-------CceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~d-S~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ +. +.|+ .||...| +++++|++|++++.|.. |++.++||+||++++.|+- ..
T Consensus 169 ~~~----g~------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~------~~ 230 (542)
T PRK12849 169 GKD----GV------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISS------LQ 230 (542)
T ss_pred ccC----Cc------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCC------HH
Confidence 642 12 3343 6999887 79999999999999874 6899999999999996631 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHc------CceeEecCC-----hHHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~------gI~vv~~Vk-----~~~LeRIar~TGA~I 214 (1247)
+ +..++++|.+.+++||+++++|++.|+++|.++ ||++|++++ +.+|+|||++|||.+
T Consensus 231 ~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~ 299 (542)
T PRK12849 231 D-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 299 (542)
T ss_pred H-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEE
Confidence 2 334689999999999999999999999999999 999999887 556999999999999
Q ss_pred cc-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCC-------------------------
Q 000863 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1247)
Q Consensus 215 is-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~------------------------- 264 (1247)
++ ++++++...||+|+.|++.+ +++++|+||..+
T Consensus 300 v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~ 363 (542)
T PRK12849 300 ISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREK 363 (542)
T ss_pred ecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 99 68999989999999998753 368889999775
Q ss_pred ----------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
..|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 364 l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~l 421 (542)
T PRK12849 364 LQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHH
Confidence 489999999999999999999999999999999996 999999999753
No 33
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=1.9e-30 Score=316.95 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=229.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|++++..+++.|+||..|+.|+.+|+...+.....++.+-++. ...+.+.|++++++|+..+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v 168 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKV 168 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999987666555554432211 1236788999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCC-------CceeecCCcEEEeecccccccCcCCHHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
.++ + .|.|++.+| ...|+++++|++|++++.|.. |++.++||+||++++.|. .+.+
T Consensus 169 ~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~------~~~~ 231 (542)
T PRK00013 169 GKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS------NIQD 231 (542)
T ss_pred CcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC------CHHH
Confidence 652 1 388999887 888999999999999999885 489999999999999663 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcC------ceeEecCC-----hHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLNVK-----RPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~g------I~vv~~Vk-----~~~LeRIar~TGA~Ii 215 (1247)
+..++++|.+.|++|||++++|++.|+++|..++ |++|++++ +.+|+|||++|||.++
T Consensus 232 -----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i 300 (542)
T PRK00013 232 -----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVI 300 (542)
T ss_pred -----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEe
Confidence 3366889999999999999999999999999997 99999886 8899999999999999
Q ss_pred c-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCc-------------------------
Q 000863 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1247)
Q Consensus 216 s-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~------------------------- 265 (1247)
+ ++++++...||+|+.|++.. +++++|+||..+.
T Consensus 301 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 364 (542)
T PRK00013 301 SEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKL 364 (542)
T ss_pred cccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 9 79999999999999998763 3789999998765
Q ss_pred ----------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
.|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 365 ~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 365 QERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 78999999999999999999999999999999995 999999999753
No 34
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=5.5e-30 Score=313.18 Aligned_cols=266 Identities=16% Similarity=0.205 Sum_probs=227.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|++++..+++.|+||..|+.|+.+|+...+...+.++...+.. ...+.+.|++++++|+..+
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~v 169 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKV 169 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999877665555444332211 1246788999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCC-------CceeecCCcEEEeecccccccCcCCHHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
.++ ..|.|++.. |...++++++|++|++++.|.. |+++++||+||+++++|+. +.+
T Consensus 170 g~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~------~~~ 232 (541)
T PRK12851 170 GNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISN------LQD 232 (541)
T ss_pred ccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCc------HHH
Confidence 642 135677766 6778899999999999999884 9999999999999998641 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCc------eeEec-----CChHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI------~vv~~-----Vk~~~LeRIar~TGA~Ii 215 (1247)
+..++++|.+.|++||+++++|++.|+++|.++|| ++|++ +++.+|+|||++|||.++
T Consensus 233 -----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i 301 (541)
T PRK12851 233 -----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI 301 (541)
T ss_pred -----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEe
Confidence 55678999999999999999999999999999997 78885 999999999999999999
Q ss_pred c-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCc-------------------------
Q 000863 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1247)
Q Consensus 216 s-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~------------------------- 265 (1247)
+ ++++++...||+|+.|++++ +++++|+||..+.
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 365 (541)
T PRK12851 302 SEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKL 365 (541)
T ss_pred ccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9 68888888999999998865 2688999987653
Q ss_pred ----------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
.|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 366 ~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 366 QERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 78999999999999999999999999999999996 999999999753
No 35
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.97 E-value=6.1e-30 Score=313.86 Aligned_cols=265 Identities=14% Similarity=0.158 Sum_probs=225.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++|+|||+|++++..+++.|+||..|+.|+.+|+...+.....++..-+.. ...+.+.|++++++|+..+
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~v 180 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKV 180 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999877665555544332210 0134577999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcc-eeEeeEEEeeccCCCC-------CceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~dS-~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ + .|.++.||+..|| ++++|++|++++.|.. |+..++||+||+++++|+. +.
T Consensus 181 g~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~------~~ 242 (555)
T PTZ00114 181 GKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS------IQ 242 (555)
T ss_pred CcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC------HH
Confidence 642 1 2889999999999 8999999999998875 5899999999999999983 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcC------ceeEec-----CChHHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLN-----VKRPLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~g------I~vv~~-----Vk~~~LeRIar~TGA~I 214 (1247)
+ +..++++|++.|.+||+++++|++.|+++|..++ |++|++ +++.+|+|||++|||.+
T Consensus 243 ~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~ 311 (555)
T PTZ00114 243 S-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATV 311 (555)
T ss_pred H-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEE
Confidence 2 4566889999999999999999999999999986 999976 78899999999999999
Q ss_pred ccCC------CCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCC--------------------------
Q 000863 215 TPSI------DNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP-------------------------- 262 (1247)
Q Consensus 215 issi------d~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~-------------------------- 262 (1247)
+++. +++++..||+|+.|++.+ . .+++|+||.
T Consensus 312 i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~ 375 (555)
T PTZ00114 312 VSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLRSQIERTTSEYDKE 375 (555)
T ss_pred ecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9998 778888899999999886 2 345666665
Q ss_pred ---------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 263 ---------RRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 263 ---------~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
.+..|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 376 ~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~ 434 (555)
T PTZ00114 376 KLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRA 434 (555)
T ss_pred HHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHH
Confidence 56799999999999999999999999999999999976 999999999753
No 36
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=8.2e-30 Score=310.54 Aligned_cols=265 Identities=15% Similarity=0.193 Sum_probs=223.4
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCCh---------hhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSE---------EDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~~---------~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|++++..+++.|+||..|+.|++.|+...+...+.++..-++.. ..-.+.|++++++|+..+
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 166 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKV 166 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999998776555544433222100 011577999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCc-ceeEeeEEEeeccCCCCC-------ceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~d-S~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ + .|.| .+||+..| +++++|++|++++.|..| +.+++||+||+++++|+. ..
T Consensus 167 ~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~------~~ 228 (520)
T cd03344 167 GKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISS------IQ 228 (520)
T ss_pred ccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCC------HH
Confidence 642 1 2333 68999999 799999999999887764 478999999999999743 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCc------eeEecC-----ChHHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLNV-----KRPLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI------~vv~~V-----k~~~LeRIar~TGA~I 214 (1247)
+ +..++++|.+.|++|||++++|++.|+++|.++|| ++|+++ ++++|+|||++|||.+
T Consensus 229 ~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~ 297 (520)
T cd03344 229 E-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTV 297 (520)
T ss_pred H-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEE
Confidence 2 34468999999999999999999999999999999 887755 8999999999999999
Q ss_pred cc-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCC-------------------------
Q 000863 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1247)
Q Consensus 215 is-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~------------------------- 264 (1247)
++ +++.++...||+|+.|++.+ .++++|+||..+
T Consensus 298 ~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 361 (520)
T cd03344 298 ISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEK 361 (520)
T ss_pred ecccccCCcccCCHHHCCcceEEEEee----------------ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99 88889888999999999764 268899999765
Q ss_pred ----------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
..|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 362 l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~ 419 (520)
T cd03344 362 LQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRA 419 (520)
T ss_pred HHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHH
Confidence 599999999999999999999999999999999996 999999999753
No 37
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.97 E-value=8e-30 Score=311.16 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=224.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|++++..++++|+||..|+.|+.+|+...+...+.++.+-++. ...+.+.|++++++|+..+
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 167 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKV 167 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999987766665554433211 1245678999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEeeEEEeeccCCCCC-------ceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~-~dS~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ + .|.|++ ||.. .++++++|++|++++.|..| ++.++||+||++++.|+- ..
T Consensus 168 ~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~------~~ 229 (524)
T TIGR02348 168 GKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN------IK 229 (524)
T ss_pred CcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC------HH
Confidence 653 1 234443 6666 66999999999999998865 899999999999997642 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHc------CceeEecCCh-----HHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVKR-----PLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~------gI~vv~~Vk~-----~~LeRIar~TGA~I 214 (1247)
+ +..++++|++.|++||+++++|++.|+++|..+ ||++|++++. .+|+|||++|||.+
T Consensus 230 ~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~ 298 (524)
T TIGR02348 230 D-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQV 298 (524)
T ss_pred H-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEE
Confidence 2 466789999999999999999999999999987 8999987754 89999999999999
Q ss_pred cc-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCc------------------------
Q 000863 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------ 265 (1247)
Q Consensus 215 is-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~------------------------ 265 (1247)
++ ++++++...||+|+.|++.. +++++++||..+.
T Consensus 299 i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~ 362 (524)
T TIGR02348 299 ISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREK 362 (524)
T ss_pred ecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99 89999999999999998763 3788999987654
Q ss_pred -----------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 266 -----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 266 -----------gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
.+||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 363 l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~ 420 (524)
T TIGR02348 363 LQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRA 420 (524)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 68899999999999999999999999999999996 999999999753
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-29 Score=283.22 Aligned_cols=291 Identities=16% Similarity=0.184 Sum_probs=253.5
Q ss_pred cceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCcc---CCChh------------hHHHHHHHHHHH
Q 000863 4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGK---EDSEE------------DWLGIITTIAWQ 68 (1247)
Q Consensus 4 ~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~---k~~~~------------~w~~~l~~l~~~ 68 (1247)
.+|+||||||.+|+.++.+|.+|..|+.||.+|....+.....+...+ ..+.+ .-.|+++.++.+
T Consensus 102 fvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ 181 (537)
T KOG0362|consen 102 FVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAK 181 (537)
T ss_pred EeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 468999999999999999999999999999999876554333322211 11211 125889999999
Q ss_pred HHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcC------
Q 000863 69 AANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN------ 142 (1247)
Q Consensus 69 A~~~V~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~------ 142 (1247)
|+..+.|. ..|++ +.|+|.||.||.+.+|+++.|+||++.+. +-+++-+..||++.+||++..+++.
T Consensus 182 ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi 254 (537)
T KOG0362|consen 182 ACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLL 254 (537)
T ss_pred HHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCcccccCcceeee
Confidence 99999985 23888 78999999999999999999999998876 4447889999999999999988763
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCC
Q 000863 143 -QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNI 221 (1247)
Q Consensus 143 -~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L 221 (1247)
+...+..+-+.|...+...|+.|...|++||++.+.|++.+++||.+.+|+|++--++-+|.|++|..||.+.+.+-..
T Consensus 255 ~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P 334 (537)
T KOG0362|consen 255 KNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPP 334 (537)
T ss_pred cCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCC
Confidence 4667777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeEEEEEEeccccccccccCCCCcceEEEEE-cCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcC
Q 000863 222 STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE-GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 300 (1247)
Q Consensus 222 ~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fe-gc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~ 300 (1247)
..+.||+|+++..+.+++ .+++.|. +|......||+|||++...||.+||++++++++.+.+..++
T Consensus 335 ~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~ 401 (537)
T KOG0362|consen 335 APEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDS 401 (537)
T ss_pred CCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCC
Confidence 999999999999998876 2566665 45567889999999999999999999999999999999999
Q ss_pred eEeeCCCccccccc
Q 000863 301 SFLADEGATLPKMR 314 (1247)
Q Consensus 301 ~~l~ggGa~e~~~~ 314 (1247)
++++|.|++|.++.
T Consensus 402 rLlpGagatEieLa 415 (537)
T KOG0362|consen 402 RLLPGAGATEIELA 415 (537)
T ss_pred ccccCCchhHHHHH
Confidence 99999999998653
No 39
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=4.2e-29 Score=305.59 Aligned_cols=266 Identities=15% Similarity=0.186 Sum_probs=222.0
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|+++|..++++|+||..|+.|+++|+...+.....++...++. ...-.+.|++++++|+..+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~v 169 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKV 169 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999876555554443322110 0112467999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCC-------ceeecCCcEEEeecccccccCcCCHHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
.++ +.+|+. ..+..| .++++++|++|++.+.|..| ++.++||+||++++.|+- +.
T Consensus 170 g~~----g~i~v~----~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~------~~- 231 (544)
T PRK12850 170 GKE----GVITVE----EAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISN------LQ- 231 (544)
T ss_pred ccc----CceeeE----EccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCC------HH-
Confidence 642 234442 122444 68899999999999998764 899999999999996531 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCc------eeEec-----CChHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI------~vv~~-----Vk~~~LeRIar~TGA~Ii 215 (1247)
.+..++++|++.|++||+++++|++.|+++|.++|| ++|++ +++.+|+|||++|||.++
T Consensus 232 ----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i 301 (544)
T PRK12850 232 ----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVI 301 (544)
T ss_pred ----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEe
Confidence 266779999999999999999999999999999999 89887 999999999999999999
Q ss_pred c-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCCc-------------------------
Q 000863 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1247)
Q Consensus 216 s-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~~------------------------- 265 (1247)
+ ++++++...||+|+.|++.. +++++|+||..+.
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 365 (544)
T PRK12850 302 SEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKL 365 (544)
T ss_pred ccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9 78888888999999998764 2688999997753
Q ss_pred ----------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
.|||+|||+|+.+++|+||.++||++++++++.+ .|||||||+|.+.
T Consensus 366 ~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~VpGGGa~e~~~ 422 (544)
T PRK12850 366 QERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRA 422 (544)
T ss_pred HHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHH
Confidence 8999999999999999999999999999999999 4999999999753
No 40
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=1.8e-28 Score=300.69 Aligned_cols=265 Identities=17% Similarity=0.194 Sum_probs=222.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCCh--------h-hHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSE--------E-DWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~~--------~-~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|+++|..+++.|+||..|+.|+.+|+...+.....++.+.+... . .-.+.|++|+++|+..|
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~v 169 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKV 169 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999876655554443322110 0 11467999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEeeEEEeeccCCCC-------CceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~-~dS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ + .|.|.. ||.. .++++++|++|++++.+.. |+..++||+|||+++.|.. +
T Consensus 170 g~~----g------~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~------~- 230 (545)
T PRK12852 170 GNE----G------VITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSG------L- 230 (545)
T ss_pred ccC----C------ceeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCC------H-
Confidence 753 1 233442 7775 7999999999999998874 9999999999999886532 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHc------CceeEecCC-----hHHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~------gI~vv~~Vk-----~~~LeRIar~TGA~I 214 (1247)
+++..++++|.+.+++|||++++|++.|+++|..+ +|++|++.+ +.+|+|||++|||.+
T Consensus 231 ----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~ 300 (545)
T PRK12852 231 ----------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQL 300 (545)
T ss_pred ----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEE
Confidence 25666789999999999999999999999999986 799999655 999999999999999
Q ss_pred cc-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCC-------------------------
Q 000863 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1247)
Q Consensus 215 is-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~------------------------- 264 (1247)
++ ++++++...||+|+.|++.+ +.+++|+||..+
T Consensus 301 i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (545)
T PRK12852 301 ISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREK 364 (545)
T ss_pred EecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99 78889888999999998875 257888888753
Q ss_pred ----------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
..|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 365 l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~ 422 (545)
T PRK12852 365 LQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRA 422 (545)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHH
Confidence 679999999999999999999999999999999995 999999999753
No 41
>CHL00093 groEL chaperonin GroEL
Probab=99.96 E-value=4.4e-28 Score=296.25 Aligned_cols=267 Identities=17% Similarity=0.184 Sum_probs=217.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++++|||+|+++|..++++|+||..|+.|+.+|+...+.....++.+.++. ...+.+.|++|+++|+..|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~v 168 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKV 168 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999876655554444332211 1246788999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCC---c----eeecCCcEEEeecccccccCcCCHHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM---T----SQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M---~----~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
.++ +.+|+ + -.+|...++++++|++|+++..|..| + ..++||+||+++++|++.+
T Consensus 169 g~~----g~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------- 230 (529)
T CHL00093 169 GRE----GVISL------E-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------- 230 (529)
T ss_pred ccC----Cceee------c-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH-------
Confidence 652 13333 1 12345667799999999999887754 3 3599999999999999752
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHH--HH----cCceeEecC-----ChHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLL--LA----KEISLVLNV-----KRPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L--~~----~gI~vv~~V-----k~~~LeRIar~TGA~Ii 215 (1247)
..+..++++|...+.++|+++++|++.|+.+| .+ +||++|+++ ++.+|+|||++|||.++
T Consensus 231 ---------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i 301 (529)
T CHL00093 231 ---------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301 (529)
T ss_pred ---------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEe
Confidence 23667889999999999999999999777766 66 599999988 45889999999999999
Q ss_pred c-----CCCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEc---------CCCC-----------------
Q 000863 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG---------CPRR----------------- 264 (1247)
Q Consensus 216 s-----sid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~feg---------c~~~----------------- 264 (1247)
+ +++++++.+||+|+.+++.+ +++++|++ |+..
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 365 (529)
T CHL00093 302 TEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQ 365 (529)
T ss_pred cccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 9 78999989999999999763 25677775 3221
Q ss_pred --------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 265 --------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 265 --------~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
..|||+|||+|+.+++|.||.++||++++++++.++ +|||||++|...
T Consensus 366 eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~ 421 (529)
T CHL00093 366 ERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHL 421 (529)
T ss_pred HHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHH
Confidence 378899999999999999999999999999999996 999999999753
No 42
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=293.63 Aligned_cols=275 Identities=17% Similarity=0.175 Sum_probs=222.3
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC--------hhhHHHHHHHHHHHHHhhcC
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS--------EEDWLGIITTIAWQAANFVK 74 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~--------~~~w~~~l~~l~~~A~~~V~ 74 (1247)
+++++||++|++++..+++.|+||..|+.|+.+|+...+..+..++...++. ...+.+.|++|+++|+..|.
T Consensus 145 TTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg 224 (600)
T PLN03167 145 TTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVG 224 (600)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999876655554443322110 01234679999999999986
Q ss_pred CCCCCCCCCCccCceEEEEccCCCCCcc-eeEeeEEEeeccCCC-------CCceeecCCcEEEeecccccccCcCCHHH
Q 000863 75 PDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHK-------RMTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 75 ~d~~~~~~~Di~~yVkIkkI~GG~~~dS-~lI~GvV~~Kn~ahk-------~M~~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
++ + .++ ...||+..|+ ++++|++|+++..|. +|+++++||+|||+++.|+. ..+
T Consensus 225 ~~---g-~i~--------v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~------~~~ 286 (600)
T PLN03167 225 RK---G-VVT--------LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITN------ARD 286 (600)
T ss_pred cC---C-cEE--------eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCC------HHH
Confidence 42 1 222 2369999998 999999999999988 89999999999999986532 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH------HcCceeEecCC-----hHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLL------AKEISLVLNVK-----RPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~------~~gI~vv~~Vk-----~~~LeRIar~TGA~Ii 215 (1247)
+.+ ++++|...++++|++.++|++.|+++|. ..+|.+|++.+ +++|+|||++|||.++
T Consensus 287 l~~-----------~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i 355 (600)
T PLN03167 287 LIG-----------ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVI 355 (600)
T ss_pred HHH-----------HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEe
Confidence 433 3457888999999999999999999999 78899999885 8999999999999999
Q ss_pred c-----CCCCCCCCCceeeeEEEEEE-----eccccccccccC-CCCcceEEEEEcCC------------C------Cce
Q 000863 216 P-----SIDNISTTRLGHCELFKLEK-----VSEEHETSNQFN-KKPSKTLMYFEGCP------------R------RLG 266 (1247)
Q Consensus 216 s-----sid~L~~~~LG~C~~f~v~~-----~~~e~~~~~~~~-~~~~Ktl~~fegc~------------~------~~g 266 (1247)
+ ++++++...||+|+.|++++ ++++ +. ....+++.+|++|. . ..+
T Consensus 356 ~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~------~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~ 429 (600)
T PLN03167 356 REEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG------STQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGG 429 (600)
T ss_pred cccccCCcccCCHHHCceeeEEEEecccceeeCCC------ccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCc
Confidence 9 78888889999999999987 4331 00 01224677777764 1 126
Q ss_pred EEEE-ecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 267 CMVL-LRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 267 cTIl-LRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
+||+ |||+|+.+++|+||.++||++++++++.++ +|+|||++|...
T Consensus 430 ~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 430 VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 7777 999999999999999999999999999999 999999999754
No 43
>PRK14104 chaperonin GroEL; Provisional
Probab=99.95 E-value=5.7e-27 Score=286.79 Aligned_cols=265 Identities=15% Similarity=0.159 Sum_probs=217.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCC---------hhhHHHHHHHHHHHHHhhc
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~---------~~~w~~~l~~l~~~A~~~V 73 (1247)
+++|+|||+|++++..+++.|+||..|+.|+.+|+...+......+.+-+.. .....+.|++++++|+..|
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~v 169 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKV 169 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999876544443332222111 0123356999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEeeEEEeeccCCCCC-------ceeecCCcEEEeecccccccCcCCHH
Q 000863 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1247)
Q Consensus 74 ~~d~~~~~~~Di~~yVkIkkI~GG~~-~dS~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLl~~~Ley~r~~~~~~ 145 (1247)
.++ + .|.|..+ +.. .++++++|++|++++.|..| +..++||+||+++..|.
T Consensus 170 g~~----g------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~--------- 228 (546)
T PRK14104 170 GNE----G------VITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLS--------- 228 (546)
T ss_pred ccC----C------ceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhc---------
Confidence 642 1 3455544 445 58999999999999998855 78899999999984332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH------cCceeEecCC-----hHHHHHHHHHhCCeE
Q 000863 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLA------KEISLVLNVK-----RPLLERIARCTGALI 214 (1247)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~------~gI~vv~~Vk-----~~~LeRIar~TGA~I 214 (1247)
++ +.+..++++|.+.|++||+++++|++.|+++|.. .||.+|++++ +.+|+|||++|||.+
T Consensus 229 ~~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~ 300 (546)
T PRK14104 229 SL--------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQA 300 (546)
T ss_pred CH--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEE
Confidence 22 2256779999999999999999999999999985 5799997776 899999999999999
Q ss_pred ccC-----CCCCCCCCceeeeEEEEEEeccccccccccCCCCcceEEEEEcCCCC-------------------------
Q 000863 215 TPS-----IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1247)
Q Consensus 215 iss-----id~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Ktl~~fegc~~~------------------------- 264 (1247)
+++ +++++...||+|+.+++ +. +.+++++||..+
T Consensus 301 i~~~~~~~l~~~~~~~LG~a~~v~~---~~-------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (546)
T PRK14104 301 ISEDLGIKLENVTLQMLGRAKKVMI---DK-------------ENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREK 364 (546)
T ss_pred EecCCCCCcCcCCHHHCCceeEEEE---cC-------------CEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999 88999899999999885 22 368889999875
Q ss_pred ----------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccc
Q 000863 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1247)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~ 313 (1247)
..|||+|||+|+.+++|+||.++||++++++++.++ ||||||++|.+.
T Consensus 365 l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~ 422 (546)
T PRK14104 365 LQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRA 422 (546)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHH
Confidence 789999999999999999999999999999999996 999999999753
No 44
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-27 Score=272.25 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=145.3
Q ss_pred CCCceEEeeCCCchhhhhhhcCChhHHHHHHhhccCCCCCCCccccccCCCccccccccccCCCCCccccccCCCCCCC-
Q 000863 1014 DNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSED- 1092 (1247)
Q Consensus 1014 ~~~~~v~v~e~epsSiIayaL~s~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~- 1092 (1247)
+.+..++++|+||||.||++|++.+|+.+.........+ +... .........+... ..++..-.
T Consensus 241 ~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~~----------De~~---l~~~~le~gh~n~--~~synmltg 305 (612)
T COG5253 241 FSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETM----------DERL---LNGMPLEGGHRNP--QESYNMLTG 305 (612)
T ss_pred cCccccccccCCcchhhhccccchhHHHHHHhhhhhhcc----------hhhh---ccccccccccccc--hhhhhhhhh
Confidence 467889999999999999999999999987543222100 0000 0000000000000 00000000
Q ss_pred --CCCCCCcccCCCCCCCceEEEEcCCCCCCCCcceEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccccccCCCCccc
Q 000863 1093 --ASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNV 1170 (1247)
Q Consensus 1093 --~~~~~~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~~~~~~~~~gGKSgs 1170 (1247)
..-++.+-.|+.....|..++|..+.. .|+|++|||++|+.||++||.++. |++++++|..|...||||||
T Consensus 306 irvtlsr~e~iM~~~tdth~~e~~~eg~~------~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~~~GKSGS 378 (612)
T COG5253 306 IRVTLSRIEEIMIKKTDTHLNEQFEEGLY------EFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWESNGGKSGS 378 (612)
T ss_pred hHHHHHHHHHHhcCCcCccchhhccccce------eeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheeccCCCcccc
Confidence 000111223667889999999987765 999999999999999999998664 99999999999999999999
Q ss_pred ceEEeccCceeeeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeeeeEEEEEEecCc------eeEecccccceeE
Q 000863 1171 FFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLH------FCLLCPCTHNMWW 1243 (1247)
Q Consensus 1171 ~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~------~~~~~~~~~~~~~ 1243 (1247)
+||+|.|.|||||||++.|. +.|+|.||+|+...++ |+.|+||||||+|+|++..+ .-...-+|-|+|+
T Consensus 379 ff~~trD~kfIiKti~hsE~---~~~r~~~~eY~~~V~~-np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiVMeNlf~ 453 (612)
T COG5253 379 FFLFTRDYKFIIKTISHSEH---ICFRPMIFEYYVHVLF-NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIVMENLFY 453 (612)
T ss_pred eEEEeccchhhhhhhhhhhH---HHHHHHHHHHHHHHHc-CchHHHHHHhceeEEeccccccccccceeEEEEecccCC
Confidence 99999999999999999998 6667777777776544 56699999999999999875 3344555666554
No 45
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=99.93 E-value=4e-26 Score=262.98 Aligned_cols=128 Identities=32% Similarity=0.522 Sum_probs=117.3
Q ss_pred CCCceEEEEcCCCCCCCCcceEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccc-cccCCCCcccceEEeccCceeeec
Q 000863 1106 KSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK-WSAQGGKSNVFFAKSLDERFIIKQ 1184 (1247)
Q Consensus 1106 ~~~h~~~~f~~~~~~~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~~~~~-~~~~gGKSgs~F~~T~D~rfiiK~ 1184 (1247)
...|.++.|.+... +|+|++|+|.+|++||+++|+++++|++||++|.. |.++|||||++||+|.|+||||||
T Consensus 15 ~~~~~~~~~~~~~~------~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKt 88 (342)
T smart00330 15 TPGHLELTPSHGSA------DFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKT 88 (342)
T ss_pred CCCcccccCCCCCc------cEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEe
Confidence 34567777766655 89999999999999999999999999999999996 999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeeeeEEEEEEecCc--eeEecccccceeE
Q 000863 1185 VKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLH--FCLLCPCTHNMWW 1243 (1247)
Q Consensus 1185 i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~--~~~~~~~~~~~~~ 1243 (1247)
|++.|++.|+++||+||+||.+ |++|||+||||+|+|++.++ ..+..-||.|+|+
T Consensus 89 i~~~E~~~l~~~lp~Y~~~~~~----n~~SlL~ki~Gly~i~~~~~~~~~~~fiVM~NlF~ 145 (342)
T smart00330 89 VSKSEIKSLLPMLPNYYEHIVQ----NPNTLLPKFFGLYRVKVKGGTEKKIYFLVMENLFY 145 (342)
T ss_pred cCHHHHHHHHHHHHHHHHHHHh----CCCcchhhhcEEEEEEECCCcceeEEEEEEecCCC
Confidence 9999999999999999999987 58999999999999999877 5777888888776
No 46
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=99.93 E-value=5.6e-26 Score=258.64 Aligned_cols=118 Identities=36% Similarity=0.627 Sum_probs=108.4
Q ss_pred CCcceEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccccccC-CCCcccceEEeccCceeeeccCHHHHHHHHHHHHHH
Q 000863 1122 GGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQ-GGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEY 1200 (1247)
Q Consensus 1122 ~~~~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~~~~~~~~~-gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Y 1200 (1247)
..+.+|+|++|+|.+|++||++||+++++|++||+++..|..+ ||||||+||+|+|+|||||||++.|++.|+++||+|
T Consensus 52 ~~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y 131 (313)
T cd00139 52 HLSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNY 131 (313)
T ss_pred CCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC-CceeeeeeEEEEEEec--CceeEecccccceeE
Q 000863 1201 FKYLTDSLNSRS-PTCLAKILGIYQVRSL--LHFCLLCPCTHNMWW 1243 (1247)
Q Consensus 1201 f~y~~~~~~~~~-~TlL~ki~G~y~v~~~--~~~~~~~~~~~~~~~ 1243 (1247)
|+||.+ |+ +|||+||||+|+|++. .+.-+..-||.|+|+
T Consensus 132 ~~~~~~----n~~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~ 173 (313)
T cd00139 132 YEYITQ----NPQNTLLPKFFGLYRVKVKSGTGKKVDFLVMENLFY 173 (313)
T ss_pred HHHHHh----CCCCcchhhheEEEEEEEcCCCCceEEEEEEecCCC
Confidence 999998 47 8999999999999998 455677778888764
No 47
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=99.90 E-value=2e-24 Score=246.20 Aligned_cols=115 Identities=28% Similarity=0.465 Sum_probs=108.4
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccccc--cCCCCcccceEEeccCceeeeccCHHHHHHHHHHHHHHHH
Q 000863 1125 VKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWS--AQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFK 1202 (1247)
Q Consensus 1125 ~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~~~~~~~--~~gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~ 1202 (1247)
.+|.||.|||.+||.||++||+++.||+.|||+..... .++|||||+||.|+|+|||||||.+.|++.++++||.||+
T Consensus 96 ~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~ 175 (420)
T KOG0229|consen 96 SDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQ 175 (420)
T ss_pred cccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988765 7789999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCceeeeeeEEEEEEecCceeEeccccccee
Q 000863 1203 YLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMW 1242 (1247)
Q Consensus 1203 y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~~~~~~~~~~~ 1242 (1247)
|+.++ ++.|||+||||+|+|+..+|.-++..||+||+
T Consensus 176 ~v~~~---~~~TLl~kf~Gly~vk~~gg~k~yfvVM~Nlf 212 (420)
T KOG0229|consen 176 HVVEQ---NNRTLLPKFFGLYRVKPDGGKKIYFVVMNNLF 212 (420)
T ss_pred HHHcc---CCceeehhhceeEEEeeCCCceEEEEEecccC
Confidence 99985 45599999999999999999999999999997
No 48
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.90 E-value=8.6e-24 Score=260.97 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=107.5
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccc--ccCCCCcccceEEeccCceeeeccCHHHHHHHHHHHHHHHH
Q 000863 1125 VKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKW--SAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFK 1202 (1247)
Q Consensus 1125 ~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~~~~~~--~~~gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~ 1202 (1247)
..|+|+.|+|.+|++||++|||++.+|+.||+.+..+ .+++|||||+||+|+|+|||||||++.|++.|+++||+||+
T Consensus 402 ~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~~ 481 (765)
T PLN03185 402 EDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYHH 481 (765)
T ss_pred CceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999977654 58999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCceeeeeeEEEEEEecCceeEecccccceeE
Q 000863 1203 YLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWW 1243 (1247)
Q Consensus 1203 y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~~~~~~~~~~~~ 1243 (1247)
||.. +++|||+||||+|+|++.++.-+...||.|+|+
T Consensus 482 hv~~----n~~TLL~kf~Gl~~i~~~~g~k~~fvVM~NlF~ 518 (765)
T PLN03185 482 HVKT----YENTLITKFFGLHRIKPSSGQKFRFVVMGNMFC 518 (765)
T ss_pred HHhh----CCCcchhhheEEEEEEeCCCcEEEEEEEecCCC
Confidence 9987 589999999999999998887888899999875
No 49
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.6e-23 Score=224.85 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=177.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCChhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000863 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGS 82 (1247)
Q Consensus 3 ~~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~~~~w~~~l~~l~~~A~~~V~~d~~~~~~ 82 (1247)
+.+++|||-++.+++.++.+++||-.|.+||.++...++..+..+.- . +
T Consensus 94 TgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~-----~------~-------------------- 142 (400)
T KOG0357|consen 94 TGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISD-----P------F-------------------- 142 (400)
T ss_pred cccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcc-----c------c--------------------
Confidence 46799999999999999999999999999999998776655544430 0 0
Q ss_pred CCccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCCHHHHHHHHHHHHHHHHHHH
Q 000863 83 MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVI 162 (1247)
Q Consensus 83 ~Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V 162 (1247)
. +..++
T Consensus 143 -e-------------------------------------------------------------------------f~emi 148 (400)
T KOG0357|consen 143 -E-------------------------------------------------------------------------FEEMI 148 (400)
T ss_pred -c-------------------------------------------------------------------------HHHHH
Confidence 0 34568
Q ss_pred HHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCCCCceeeeEEEEEEeccccc
Q 000863 163 SKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHE 242 (1247)
Q Consensus 163 ~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~ 242 (1247)
+.|+..|+++++||++.++.|.++|.+++..+|++|.-.+||-||.+||+.|++.+.+|++.+||+|+.+++..|+..
T Consensus 149 ~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgtt-- 226 (400)
T KOG0357|consen 149 QQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTT-- 226 (400)
T ss_pred HHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccc--
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCccccc
Q 000863 243 TSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPK 312 (1247)
Q Consensus 243 ~~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~ 312 (1247)
.++++.+|.|++.+..||.+||+|.-+++|.||+++||+|+++|++.+.++|.|||+.|..
T Consensus 227 ---------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 227 ---------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ---------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 3689999999999999999999999999999999999999999999999999999999873
No 50
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=99.69 E-value=2.6e-17 Score=183.83 Aligned_cols=86 Identities=26% Similarity=0.477 Sum_probs=64.3
Q ss_pred hhccc--cccccCCCCcccceEEeccCceeeeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeeeeEEEEEEecCc-
Q 000863 1154 SLSRS--RKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLH- 1230 (1247)
Q Consensus 1154 SL~~~--~~~~~~gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~- 1230 (1247)
|||.+ ..|..+||||||+||+|.|+|||||||++.|++.|+++||+||+||.+ ++.|||+||||+|+|+..++
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~~~~ 77 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKSNGK 77 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EETT-
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheecccCCc
Confidence 67654 568899999999999999999999999999999999999999999998 47899999999999977776
Q ss_pred eeEecccccceeE
Q 000863 1231 FCLLCPCTHNMWW 1243 (1247)
Q Consensus 1231 ~~~~~~~~~~~~~ 1243 (1247)
..+...||.|+|+
T Consensus 78 ~~~~fvVM~N~f~ 90 (252)
T PF01504_consen 78 EKIYFVVMENLFY 90 (252)
T ss_dssp EEEEEEEEE-SS-
T ss_pred eeEEEEEECCCcc
Confidence 8888999999885
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=7.2e-06 Score=97.48 Aligned_cols=273 Identities=16% Similarity=0.164 Sum_probs=180.1
Q ss_pred cceeeechhhHHHHHhhhCCCChHHHHHHHHHHHH--HHHHHHhCCcCccCCChh-------hHHHHHHHHHHHHHhhcC
Q 000863 4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALV--SELLRAEGIKLGKEDSEE-------DWLGIITTIAWQAANFVK 74 (1247)
Q Consensus 4 ~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~--~qLl~~~~i~~~~k~~~~-------~w~~~l~~l~~~A~~~V~ 74 (1247)
..++||..+..+....+..|..|..+-.|-..+.. ...|+....++.+..+.. .--..+..+.-+|...|.
T Consensus 104 tatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG 183 (550)
T KOG0356|consen 104 TATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVG 183 (550)
T ss_pred hHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhC
Confidence 35788889999988899999999999888777653 233444444443221100 000223445667777776
Q ss_pred CCCCCCCCCCccCceEEEEccCCCCCcc-eeEeeEEEeeccCCC-------CCceeecCCcEEEeecccccccCcCCHHH
Q 000863 75 PDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHK-------RMTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1247)
Q Consensus 75 ~d~~~~~~~Di~~yVkIkkI~GG~~~dS-~lI~GvV~~Kn~ahk-------~M~~~i~nprIlLl~~~Ley~r~~~~~~s 146 (1247)
++ .-|.| .-|....|. +++.|+=|++...++ .+..+++||.+||..-.+. +..+
T Consensus 184 ~~----------GVItv--~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~------~v~~ 245 (550)
T KOG0356|consen 184 RK----------GVITV--KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKIS------SVQS 245 (550)
T ss_pred cC----------CeEEe--ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhh------HHHH
Confidence 42 11222 234555554 889999999997653 4556788888888764432 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHcC------ceeE-----ecCChHHHHHHHHHhCCeEc
Q 000863 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLV-----LNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~g------I~vv-----~~Vk~~~LeRIar~TGA~Ii 215 (1247)
+-+. ++.=.+..-.+|++...|+..|+..|.=++ +.+| .+-+...|.+||-+|||.++
T Consensus 246 ivp~-----------LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~ 314 (550)
T KOG0356|consen 246 IVPA-----------LELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVF 314 (550)
T ss_pred HhHH-----------HHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhh
Confidence 3332 233334455688888999999999988653 2222 45577889999999999988
Q ss_pred cC------CCCCCCCCceeeeEEEEEEeccccccccccCC------------------------CCcceEEEEEcCCCCc
Q 000863 216 PS------IDNISTTRLGHCELFKLEKVSEEHETSNQFNK------------------------KPSKTLMYFEGCPRRL 265 (1247)
Q Consensus 216 ss------id~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~------------------------~~~Ktl~~fegc~~~~ 265 (1247)
.. ++.....+||.|..+.+.+-.. ..+.+.+++ +..+++-.|.| .
T Consensus 315 ~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~----g 389 (550)
T KOG0356|consen 315 GEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSG----G 389 (550)
T ss_pred ccchhhcccccCchhhcCcceeEEEecCcc-eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcC----C
Confidence 64 3455678999999988765432 222221111 11222223333 4
Q ss_pred eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccc
Q 000863 266 GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 311 (1247)
Q Consensus 266 gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~ 311 (1247)
.++|-+.|.++.++++-|..+.||+++.+++..|+ ++||||+.+.
T Consensus 390 vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all 434 (550)
T KOG0356|consen 390 VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALL 434 (550)
T ss_pred eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHH
Confidence 68899999999999999999999999999987766 9999999875
No 52
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.23 E-value=0.016 Score=76.56 Aligned_cols=99 Identities=7% Similarity=-0.174 Sum_probs=75.0
Q ss_pred CCCCchhhhcceeEEEecCcEEEEEEEeccCcCCCCCCCCcEEEEecCcccCCCCCCCCCCceEeccchhhcccHHHHHH
Q 000863 523 CRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLE 602 (1247)
Q Consensus 523 C~sC~~pm~~H~r~yvH~~g~l~I~v~~l~~~~lpg~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mSd~tw~lSFgKfLE 602 (1247)
|..|+.||..|++.++|+.- .+. -+.. .+.+++..+ +|-||++|..|+.. +-+ +|...+|.+.+|+++|
T Consensus 659 ~~~~~~~~~~~lv~~~es~~-~~~-~~s~-~~~~~~l~e-~~~~~~~~~~~k~~------~~~-~~~~~~~~~~~~~~~e 727 (1598)
T KOG0230|consen 659 SSYSKGPKQNGLVPAHESVL-NDL-HEST-LSILSKLPE-TRSGTHEGNEDKGP------GLE-PELANNQNIQRPEETE 727 (1598)
T ss_pred hhhcCchhhccccccccccc-ccc-cccc-ccccccccc-hhcccchhccccCc------ccc-ccccccccccchhhhh
Confidence 33589999999999999887 222 2222 134666554 89999999999973 666 9999999999999999
Q ss_pred hhccCccccCccCCCCCccccceeeeceeCCeE
Q 000863 603 LSFSNHATANRIASCGHSLQRDCLRYYGFGSMI 635 (1247)
Q Consensus 603 L~F~~~~~~~r~~~C~Hsl~rDh~ryFg~~~~v 635 (1247)
-. +.....+...|+|.+---|.|+| +.++|
T Consensus 728 ~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 728 EQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 88 44455566778888888888888 76664
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=60.69 E-value=21 Score=37.90 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=36.8
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCcee-EecCC--h----HHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL-VLNVK--R----PLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~v-v~~Vk--~----~~LeRIar~TGA 212 (1247)
+++|++++|||||..........+.|.+.||.+ +.... . +.++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 677899999999997666665778899999954 43332 1 356677777765
No 54
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=59.08 E-value=27 Score=32.68 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHH
Q 000863 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIA 207 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIa 207 (1247)
+++.|...++++|+| ++|.+.+...|.++||.++.....+.=+-|.
T Consensus 45 ~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~ 90 (94)
T PF02579_consen 45 IAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALE 90 (94)
T ss_dssp HHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHH
T ss_pred HHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHH
Confidence 355666789999999 5689999999999999999985544444443
No 55
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=53.75 E-value=30 Score=38.34 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHHHHhcCCCEEEecCCCCHHH-HHHHHHcCceeEecC--C----hHHHHHHHHHhCCe
Q 000863 162 ISKIEALRPNVLLVEKSVSSYA-QDLLLAKEISLVLNV--K----RPLLERIARCTGAL 213 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~A-l~~L~~~gI~vv~~V--k----~~~LeRIar~TGA~ 213 (1247)
+++|++++|||||....-.... .+.|.+.||.++.-- . .+.++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 7788999999999976555544 888999999876532 1 34578888888774
No 56
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=53.13 E-value=24 Score=40.52 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEe-cC-----ChHHHHHHHHHhCCe
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL-NV-----KRPLLERIARCTGAL 213 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~-~V-----k~~~LeRIar~TGA~ 213 (1247)
+++|++++|||||+....++...+.|.+.||.++. .. -...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 78899999999999988888888999999998763 22 124577888888753
No 57
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=52.82 E-value=28 Score=41.62 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC-------hHHHHHHHHHhCC
Q 000863 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK-------RPLLERIARCTGA 212 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk-------~~~LeRIar~TGA 212 (1247)
-+++|++++|||||....-.....+.|.+.||.++.--. .+.++.|++.+|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 478899999999999765556678889999999865321 1445666777665
No 58
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.04 E-value=36 Score=32.49 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC
Q 000863 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk 199 (1247)
+++.|...++++|+|. ++.+-+++.|.++||.++.-..
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 5666777999999995 6999999999999999997766
No 59
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=48.28 E-value=41 Score=31.98 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC
Q 000863 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk 199 (1247)
..+.+...++++|+|.+ |.+-++..|.++||.++.-..
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 45556678999999975 999999999999999997766
No 60
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.66 E-value=61 Score=32.86 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=56.9
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHhhcc---------------ccccc-cCCCCccc----ceEEeccCceee-------
Q 000863 1130 TSYFAKQFDSLRKKCCPSGVDFVRSLSR---------------SRKWS-AQGGKSNV----FFAKSLDERFII------- 1182 (1247)
Q Consensus 1130 ~~y~~~~F~~lR~~~~~~~~~f~~SL~~---------------~~~~~-~~gGKSgs----~F~~T~D~rfii------- 1182 (1247)
++|--..|..+-+.++++++++...+.. -.+|. ...||||. .||+..|.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 5677789999999999998887665542 12343 45789985 366665655555
Q ss_pred -eccCHHHHHHHHHHHHHHHHHHHh
Q 000863 1183 -KQVKKTELESFEEFAPEYFKYLTD 1206 (1247)
Q Consensus 1183 -K~i~~~E~~~f~~~~p~Yf~y~~~ 1206 (1247)
-.|+..|++.|.+++..|+.+-..
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988665
No 61
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=46.18 E-value=36 Score=37.82 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=36.6
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC----hHHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK----RPLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk----~~~LeRIar~TGA 212 (1247)
+++|++++||+||+.....+ ..+.|.+.|.+++.... .+.++++++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 67889999999999877666 77778888866654431 3566777777664
No 62
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.13 E-value=88 Score=31.80 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCC
Q 000863 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 212 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA 212 (1247)
+.+.|++.|+|+|+| ..|.+-|...|.++||-++.-....+=+-|-....+
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 466788999999999 689999999999999999887775544445444433
No 63
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=38.21 E-value=68 Score=35.83 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=37.2
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC--hH----HHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK--RP----LLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk--~~----~LeRIar~TGA 212 (1247)
+++|++++||+||+.........+.|.+.+..++.... .. .++.+++.+|.
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~ 114 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGK 114 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCc
Confidence 67889999999999988877666777777666655543 23 46667777765
No 64
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=36.43 E-value=81 Score=34.44 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=39.2
Q ss_pred HHHHHhcCCCEEEecCCC-CHHHHHHHHHcCceeEecCC-------hHHHHHHHHHhCCe
Q 000863 162 ISKIEALRPNVLLVEKSV-SSYAQDLLLAKEISLVLNVK-------RPLLERIARCTGAL 213 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~V-s~~Al~~L~~~gI~vv~~Vk-------~~~LeRIar~TGA~ 213 (1247)
+++|++++||+||..... .......+.+.||.++.--. .+.++.|++++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 478899999999999998 77788888999998874222 35677888888763
No 65
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=35.72 E-value=66 Score=36.44 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHhcCCCEEEecCC-CCHHHHHHHHHcCceeEec-C-C----hHHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKS-VSSYAQDLLLAKEISLVLN-V-K----RPLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~-Vs~~Al~~L~~~gI~vv~~-V-k----~~~LeRIar~TGA 212 (1247)
+++|++++|||||+..+ -.....+.|.+.||.++.- . . ...++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 67889999999998654 3455668899999988753 1 1 1335555555553
No 66
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.44 E-value=51 Score=34.94 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCEEEecCCCCHH-HHHHHHHcCceeE
Q 000863 161 VISKIEALRPNVLLVEKSVSSY-AQDLLLAKEISLV 195 (1247)
Q Consensus 161 ~V~rI~~~~pnVVLvek~Vs~~-Al~~L~~~gI~vv 195 (1247)
-+++|++++|||||........ ..+.|.+.||.++
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred CHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 3788999999999987665553 7788999998553
No 67
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.87 E-value=78 Score=37.11 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHhcCCCEEEecCCC-----CHHHHHHHHHcCceeEec------C--ChHHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLN------V--KRPLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~V-----s~~Al~~L~~~gI~vv~~------V--k~~~LeRIar~TGA 212 (1247)
+++|++++|||||..... ...+.+.|.+.||.++.- + -...++.+++.+|.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 678899999999987554 245777899999887641 1 13457788888775
No 68
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.78 E-value=1.2e+02 Score=35.94 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEc
Q 000863 160 MVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 160 ~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Ii 215 (1247)
..++.|+..+|.+|+...+.... .+.|.++||.++..|..-.+-+.+.-.|++.+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 45777788999999999888776 47799999999999987666677777888766
No 69
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.33 E-value=72 Score=35.60 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHhcCCCEEEecCCCCH-HHHHHHHH-cCceeEecCC-------hHHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSS-YAQDLLLA-KEISLVLNVK-------RPLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~-~Al~~L~~-~gI~vv~~Vk-------~~~LeRIar~TGA 212 (1247)
+++|++++|||||....... ...+.|.+ +||.++.--. .+.++.+++.+|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 67889999999999876654 23444554 8888764221 2346666666664
No 70
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=29.84 E-value=1.8e+02 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHhcCCCEEEecCCC------CHHHHHHHHHcCceeEecCChHHHHHHHHHhCCe
Q 000863 164 KIEALRPNVLLVEKSV------SSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1247)
Q Consensus 164 rI~~~~pnVVLvek~V------s~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~ 213 (1247)
.|...+|.+|+|+-++ ++.|.++|.+.|+-|+.---+..|+|.-..-|+.
T Consensus 56 ~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 56 ELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 3445799999999876 7899999999999999999999999998888763
No 71
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.38 E-value=1e+02 Score=34.67 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC-------hHHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK-------RPLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk-------~~~LeRIar~TGA 212 (1247)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 122 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGK 122 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCc
Confidence 67789999999998765555555556666766554211 2346777777765
No 72
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=28.99 E-value=71 Score=31.19 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=27.2
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeE
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 195 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv 195 (1247)
++.|++++|||||+..+......+.|.+.||.++
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~ 87 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVV 87 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEE
Confidence 5667888999999998877667777888886554
No 73
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=27.24 E-value=1.3e+02 Score=34.79 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCC---h----HHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK---R----PLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk---~----~~LeRIar~TGA 212 (1247)
+++|++++||+||+...-.....+.|.+.+-+++...+ - ..++.+++.+|-
T Consensus 94 ~E~I~al~PDLIi~~~~~~~~~~~~L~~~~pv~~~~~~~~~~~~~~~~i~~lg~i~g~ 151 (303)
T PRK11411 94 LEAIAALKPDLIIADSSRHAGVYIALQKIAPTLLLKSRNETYQENLQSAAIIGEVLGK 151 (303)
T ss_pred HHHHHhCCCCEEEecccccHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899999999999766566667777777433333221 1 235678888885
No 74
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=26.05 E-value=33 Score=36.28 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=27.8
Q ss_pred EEEEcCHHHH---HHHHHHcCCChHHHHHhhccccccccCCCCcccceEEeccCceeee
Q 000863 1128 SVTSYFAKQF---DSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIK 1183 (1247)
Q Consensus 1128 ~~~~y~~~~F---~~lR~~~~~~~~~f~~SL~~~~~~~~~gGKSgs~F~~T~D~rfiiK 1183 (1247)
.|+-|||.-= ..|..+....|-+=+. ...-..|+-++.||+|.|+||||=
T Consensus 101 avkkYyP~TTnld~~lK~RlnL~EgDPVi------S~GDt~GRRaALFYRtSdEr~ill 153 (230)
T PF12226_consen 101 AVKKYYPGTTNLDQQLKDRLNLTEGDPVI------SMGDTTGRRAALFYRTSDERYILL 153 (230)
T ss_dssp TEEEB-GGG--S-HHHHHHHT--TT-EEE------EEEETT--EEEEEEETTTTEEEEE
T ss_pred hhhhcCCCCccHHHHHHHhhccccCCcee------eecCCCCceEEEEEeccCceEEEE
Confidence 4667777432 2444444443332222 234567899999999999999974
No 75
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.21 E-value=2.2e+02 Score=33.42 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEc
Q 000863 160 MVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1247)
Q Consensus 160 ~~V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Ii 215 (1247)
..++.+++.+|++|.+..+......+.|.++|+.++-.|..-..-+.+.-.|+++|
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 45666778899999998887777888899999999888876555555656677665
No 76
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.43 E-value=46 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.8
Q ss_pred chHHHHHHhhcCCCCCCCCCchhhhc
Q 000863 507 PLGRYLHGDLFNQTSCCRSCNESAEA 532 (1247)
Q Consensus 507 tLG~FLe~~c~~~~~~C~sC~~pm~~ 532 (1247)
-+|++|.+=---.+..||.|+.|++.
T Consensus 4 ~m~~~LL~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 4 KMGEYLLQGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HHHHHHHHhHhHhcCccCCCCCeeEE
Confidence 36888887666667889999999975
No 77
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.51 E-value=1.6e+02 Score=33.81 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHHcCceeEec------CChHHHHHHHHHhCCe
Q 000863 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN------VKRPLLERIARCTGAL 213 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~------Vk~~~LeRIar~TGA~ 213 (1247)
+++|++++|||||....-.......+.+.|+.+|.- --.+.++.+++.+|-.
T Consensus 108 ~E~i~~lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~~~~~~~~~i~~lg~~~g~e 165 (319)
T COG0614 108 LEKIVALKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYGSLDDIKEQIRLLGKALGKE 165 (319)
T ss_pred HHHhhhcCCCEEEEecccchhHHHHHHhcCCCEEEECCcchhhHHHHHHHHHHHhCcH
Confidence 789999999999999985555566688899888642 2356788888887764
No 78
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.74 E-value=1.8e+02 Score=32.09 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHHHHhcCCCEEEecCC-CCHHHHHHHHHcCceeEe-c-C-Ch----HHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKS-VSSYAQDLLLAKEISLVL-N-V-KR----PLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~-Vs~~Al~~L~~~gI~vv~-~-V-k~----~~LeRIar~TGA 212 (1247)
+++|++++|||||+... .+....+.|.+.||.++. . . .. +.++.+++.+|-
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~ 109 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGV 109 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 57889999999999664 455677889999998764 2 1 22 334455555554
No 79
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=21.56 E-value=94 Score=35.36 Aligned_cols=51 Identities=4% Similarity=0.001 Sum_probs=35.1
Q ss_pred HHHHHhcCCCEEEecCCC-----CHHHHHHHHHcCceeEec----------C---Ch----HHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLN----------V---KR----PLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~V-----s~~Al~~L~~~gI~vv~~----------V---k~----~~LeRIar~TGA 212 (1247)
+++|++++||+||+..+- .....+.|.+.||.|+.- . .. +.++.+++.+|.
T Consensus 71 ~E~i~~l~PDlvi~~~~~~~~~~~~~~~~~l~~~gipv~~~p~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 143 (287)
T TIGR03868 71 PEAVLETEPDLVYAGWESNLTAEGAGERADLASLGVNTYVAPSACKEDGYQPDPLTFDDVFAEITEVGTIFDV 143 (287)
T ss_pred HhHhhcCCCCEEEeccccccCCCCCCCHHHHHHCCCeEEECccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 788999999999984321 123457789999999852 0 11 236777888875
No 80
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.60 E-value=1.2e+02 Score=34.41 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHHhcCCCEEEecCCCCH-----HHHHHHHHcCceeEecC----------Ch----HHHHHHHHHhCC
Q 000863 162 ISKIEALRPNVLLVEKSVSS-----YAQDLLLAKEISLVLNV----------KR----PLLERIARCTGA 212 (1247)
Q Consensus 162 V~rI~~~~pnVVLvek~Vs~-----~Al~~L~~~gI~vv~~V----------k~----~~LeRIar~TGA 212 (1247)
+++|++++|||||+...... ...+.|.+.||.++.-- .- +.++.+++.+|.
T Consensus 72 ~E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~ 141 (284)
T cd01148 72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILPESCGQRRGEATLDDVYNDIRNLGKIFDV 141 (284)
T ss_pred HHHHhcCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECchhccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899999999999754322 23577899999887642 11 247788888877
No 81
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=20.02 E-value=1e+02 Score=33.77 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=28.4
Q ss_pred hcCCCCCCCCCchhhhcceeEEEecCcEEEEEEEeccCcCCCCCCCCcEEEEecCcccCC
Q 000863 516 LFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAH 575 (1247)
Q Consensus 516 c~~~~~~C~sC~~pm~~H~r~yvH~~g~l~I~v~~l~~~~lpg~~~~~I~mWs~C~~C~~ 575 (1247)
-|...-.||.|+.-|..|.+.| .+|=.. .-+.|--.|.+|+.
T Consensus 10 ~~~~~~~CPvCg~~l~~~~~~~-----------------~IPyFG-~V~i~t~~C~~CgY 51 (201)
T COG1779 10 EFETRIDCPVCGGTLKAHMYLY-----------------DIPYFG-EVLISTGVCERCGY 51 (201)
T ss_pred eeeeeecCCcccceeeEEEeee-----------------cCCccc-eEEEEEEEccccCC
Confidence 3455678999999777776543 233222 25677788999986
Done!