BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000864
(1247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K368|FANCI_MOUSE Fanconi anemia group I protein homolog OS=Mus musculus GN=Fanci
PE=1 SV=2
Length = 1330
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 264/537 (49%), Gaps = 63/537 (11%)
Query: 29 GGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLP 88
G +Y + D L W + +++L S+ +++ + + KV ++LQ++P
Sbjct: 153 GEEYKRQLIDTLCSVRWPQRYMIQLTSVFKDVCL-TPEEMNLVVAKVLTMFSKLNLQEIP 211
Query: 89 TLVYQLLVLASRGFNKREVIEGIVVFFG---------------SKMGSKVTSIVRQVEGT 133
LVYQLLVL+S+G ++R V++GI+ FF S++ + + VEGT
Sbjct: 212 PLVYQLLVLSSKG-SRRSVLDGIIAFFRELDKQHREEQSSDELSELITAPADELYHVEGT 270
Query: 134 VLLHVNFAVKQDPSLGQEVMGLVKLDL-----RAFNHFAVAVLLSVARIRKFSESAMGIL 188
V+LH+ FA+K D LG+E++ +K + F++A+LLS+ RI++F E +L
Sbjct: 271 VILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLL 330
Query: 189 KTALLTAYRDYKFSKDCMWLPNDSKDEFLQSV----KVVEKAVLRSVNESNYGREHVVPS 244
KT+++ +++D + L SK FLQ++ V +L V S + +HV
Sbjct: 331 KTSVVKSFKD-------LQLLQGSK--FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQG 381
Query: 245 IVQFGFILLES-----------VEEG-SLKEHCQSNGLLGIEKLGIQILKTLFEVHDMAR 292
+++FGFIL++S VE G SL + + KLG IL F++H+M R
Sbjct: 382 LIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHAC----KLGANILLETFKIHEMIR 437
Query: 293 SEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVAT 352
EI+EQ RV++ + L +++ P +L++ S++ E DY TF+ +
Sbjct: 438 QEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPL-ILQNCSKVTETFDYLTFLPLQTVQ 496
Query: 353 YLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLS 412
L+ A+ PL+ IS ++D ILV+RKAMF + R +A + L+ K K GSL
Sbjct: 497 GLLKAVQPLLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLL---KNFKVLGSLP 553
Query: 413 LQDSSSQASCSQQEIP-RSTHGGLFQELSAL-----LQRCLYQQAKVKEVMYQGLVKLVL 466
+ +Q + S + + E L L+R L QQA ++ ++Y G ++
Sbjct: 554 SSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVLR 613
Query: 467 VDPSAGGPIFDFLLPHFLRFFREDSDV--QLGVNLCIKVENGRAFIDEPLDCLLYCV 521
+ I L +F+ + D+ L + C+ + + F+ EPLD LL C+
Sbjct: 614 RNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGACVLTQGSQIFLQEPLDHLLSCI 670
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 154/325 (47%), Gaps = 40/325 (12%)
Query: 908 TWAEGFCKSNSITNANVVKSVVKLAICL----SSPPNDLFVAQSLAQELLKVTGSGSSD- 962
+W CK S +A+ KS++ L L SP L + L+Q++ G D
Sbjct: 1004 SWTSKICKEYSQEDASFCKSLMNLFFSLHVLYKSPVTLL---RDLSQDIHGQLGDIDQDV 1060
Query: 963 SLEVSELYPLINHSTST-TILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDED 1021
+E ++ + ++N T+ T+ +L E+V+ ++DW I K+K + Q+ + +
Sbjct: 1061 EIEKTDHFAVVNLRTAAPTVCLLVLSQAEKVLEEVDWLIAKIKGSA--NQETLSDKVTPE 1118
Query: 1022 HVSG------LGFEENLYSRTEALVKVLSSFVLMSLKDPQ-AEHFLRLATRLYKHLAQMS 1074
S L E+ + + LV V +L + L+ +++Y L
Sbjct: 1119 DASSQAVPPTLLIEKAIVMQLGTLVTFFHELVQTALPSGSCVDTLLKGLSKIYSTLTAFV 1178
Query: 1075 KLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQR--------GQLENASSKG 1126
K + + +P+ ++LV+L+ LT Y+F++ +Q + E A+
Sbjct: 1179 KYYLQVCQSSRGIPN-TVEKLVKLSGSHLTPVCYSFISYVQNKSSDAPKCSEKEKAAVST 1237
Query: 1127 ILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKI----LDTV- 1181
+ K+ RE K IP+L+F IE YEK+LIQLSK SK+NL++H K STSRDFKI LD V
Sbjct: 1238 TMAKVLRETKPIPNLVFAIEQYEKFLIQLSKKSKVNLMQHMKLSTSRDFKIKGSVLDMVL 1297
Query: 1182 --------GEGDASNNEANDNEAAE 1198
EG AS + D E A+
Sbjct: 1298 REDEEDENEEGTASAHTQQDREPAK 1322
>sp|Q9NVI1|FANCI_HUMAN Fanconi anemia group I protein OS=Homo sapiens GN=FANCI PE=1 SV=4
Length = 1328
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/514 (29%), Positives = 262/514 (50%), Gaps = 48/514 (9%)
Query: 45 WSKGLLLKLVSIVRELGFFDKRRCSEFLM-KVFEGMKIVDLQDLPTLVYQLLVLASRGFN 103
W + +++L S+ +++ + EF++ K ++LQ++P LVYQLLVL+S+G +
Sbjct: 169 WDQQYVIQLTSMFKDVPLTAEE--VEFVVEKALSMFSKMNLQEIPPLVYQLLVLSSKG-S 225
Query: 104 KREVIEGIVVFFGS--------KMGSKVTSIV-------RQVEGTVLLHVNFAVKQDPSL 148
++ V+EGI+ FF + + G ++ +V R VEGT++LH+ FA+K D L
Sbjct: 226 RKSVLEGIIAFFSALDKQHNEEQSGDELLDVVTVPSGELRHVEGTIILHIVFAIKLDYEL 285
Query: 149 GQEVMGLVKLDLRA-----FNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSK 203
G+E++ +K+ + + F++A+LLSV RI++F + + +LKT+++ +++D + +
Sbjct: 286 GRELVKHLKVGQQGDSNNNLSPFSIALLLSVTRIQRFQDQVLDLLKTSVVKSFKDLQLLQ 345
Query: 204 DCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLES-----VEE 258
+L N + V +L V S + +HV +V+ GFIL++S V +
Sbjct: 346 GSKFLQN-----LVPHRSYVSTMILEVVKNSVHSWDHVTQGLVELGFILMDSYGPKKVLD 400
Query: 259 GSLKEHCQSNGLLGIE---KLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVI 315
G E S + + KLG IL F++H+M R EI+EQ RV++ +
Sbjct: 401 GKTIETSPSLSRMPNQHACKLGANILLETFKIHEMIRQEILEQVLNRVVTRASSPISHFL 460
Query: 316 RLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILV 375
L+ N+V P + S++ E DY +F+ + L+ A+ PL+ +S ++D ILV
Sbjct: 461 DLLSNIVMYAPLVLQSCSSKVTEAFDYLSFLPLQTVQRLLKAVQPLLKVSMSMRDCLILV 520
Query: 376 VRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLSLQDSSSQASCSQQEIPRSTHGG- 434
+RKAMF + R +A + L+ K K GSLS S S SQ + +H
Sbjct: 521 LRKAMFANQLDARKSAVAGFLLLL---KNFKVLGSLSSSQCSQSLSVSQVHVDVHSHYNS 577
Query: 435 -----LFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFRE 489
E+ L+RCL QQA V+ ++Y+G ++ + + LL +F+
Sbjct: 578 VANETFCLEIMDSLRRCLSQQADVRLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEP 637
Query: 490 DSDV--QLGVNLCIKVENGRAFIDEPLDCLLYCV 521
D+ L + CI + + + EPLD LL C+
Sbjct: 638 KPDLLPPLKLEACILTQGDKISLQEPLDYLLCCI 671
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 139/285 (48%), Gaps = 18/285 (6%)
Query: 908 TWAEGFCKSNSITNANVVKSVVKLAICLS-SPPNDLFVAQSLAQELLKVTGSGSSD-SLE 965
+W CK NS +A KS++ L L S + + + + L+Q++ G D +E
Sbjct: 1008 SWTSKICKENSREDALFCKSLMNLLFSLHVSYKSPVILLRDLSQDIHGHLGDIDQDVEVE 1067
Query: 966 VSELYPLINHSTST-TILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVN-HDEDHV 1023
+ + ++N T+ T+ +L E+V+ ++DW I K+K V+Q+ + + +
Sbjct: 1068 KTNHFAIVNLRTAAPTVCLLVLSQAEKVLEEVDWLITKLK--GQVSQETLSEEASSQATL 1125
Query: 1024 SGLGFEENLYSRTEALVKVLSSFVLMSLKDPQ-AEHFLRLATRLYKHLAQMSKLRIAPKG 1082
E+ + + L+ V +L + L+ ++Y L + + +
Sbjct: 1126 PNQPVEKAIIMQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTTLTALVRYYLQVCQ 1185
Query: 1083 CKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQ----------RGQLENASSKGILNKIK 1132
+P ++LV+L+ LT Y+F++ +Q + + A+ + ++
Sbjct: 1186 SSGGIPK-NMEKLVKLSGSHLTPLCYSFISYVQNKSKSLNYTGEKKEKPAAVATAMARVL 1244
Query: 1133 RENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKI 1177
RE K IP+LIF IE YEK+LI LSK SK+NL++H K STSRDFKI
Sbjct: 1245 RETKPIPNLIFAIEQYEKFLIHLSKKSKVNLMQHMKLSTSRDFKI 1289
>sp|P30002|TEGU_HHV6G Large tegument protein OS=Human herpesvirus 6A (strain GS) GN=U31
PE=3 SV=1
Length = 2077
Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 385 DAVRHAATNAIIDLIMAEKQS-KTDGSLSL--QDSSSQASCSQQEIPRSTHG--GLFQ-E 438
+ + ++ ID IM E T G+L+L +S SQ EIP+ H G+ Q E
Sbjct: 37 NGINNSLNAGTIDAIMEEGYHLDTAGTLALMLNNSDSQDYRLPTEIPKRIHSRYGVTQHE 96
Query: 439 LSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIF 476
LS L Q K+ +Y GL+ L+L S GP F
Sbjct: 97 LSRPFNGTLDTQ-KIDNEVYLGLIDLILYGKSKNGPTF 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,024,180
Number of Sequences: 539616
Number of extensions: 16929091
Number of successful extensions: 53312
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 53232
Number of HSP's gapped (non-prelim): 85
length of query: 1247
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1118
effective length of database: 121,958,995
effective search space: 136350156410
effective search space used: 136350156410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)