BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000867
(1247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 67.0 bits (162), Expect = 7e-11, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 692 EMKLQGILED--KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT- 746
E+KL+ I++ LN ++ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 747 GNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPP--EVDSETQKMF 804
++ P K R G QN P +TVY+++ + LR P E+D +
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK----- 113
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 862
+ E+ +++ ++ L L P + LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 114 VREVAKMLHIDKL---LNRYPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FTRISGYCEQN 771
G +TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG-- 829
+ S ++ E++ Y A P V +E + E + + Q + GE G
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 890 S 890
S
Sbjct: 543 S 543
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHI 193
+T+VG++ V +SGGQK+R+ ++ L +DE ++ LD+ + + ++ + +
Sbjct: 474 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---L 529
Query: 194 LNGTAVI 200
++G V+
Sbjct: 530 MDGRTVL 536
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 765 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
GY QN TV E + +S L + +SE +K I++++ELV L+ L +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELVGLSGLAAA--- 136
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
LS Q++RL IA L + + +DEP S LD + + + + + + G+ ++
Sbjct: 137 --DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 884 CTIHQ 888
H+
Sbjct: 195 LVTHE 199
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 13/181 (7%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FTRISGYCEQN 771
G +TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG-- 829
+ S ++ E++ Y A P V +E + E + + Q + GE G
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 890 S 890
S
Sbjct: 574 S 574
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHI 193
+T+VG++ V +SGGQK+R+ ++ L +DE ++ LD+ + + ++ + +
Sbjct: 505 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---L 560
Query: 194 LNGTAVI 200
++G V+
Sbjct: 561 MDGRTVL 567
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 758
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
R G QN P +TV+E++ + LR E +K +E +L+ N L
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 129 RK------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 18/204 (8%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGNITISGYPKK 757
K++ L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q P +T +E++ A+ ++ E + +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIH-- 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 874
L P E LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 132 -HVLNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 875 TVDTGRTVVCTIHQPSIDIFESFD 898
+ G T++ H P+ DIF D
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIAD 209
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 24/232 (10%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+L F + +S KE+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 737 AGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP 793
++ + G ++I G + I G Q + T+ E++ Y
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTM 493
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
E++ ++ + +++L +LVG G + LS Q++R+ IA LV NP I+ +
Sbjct: 494 DEIEKAVKEANAYDF--IMKLPHQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLL 550
Query: 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFESFDEGI 901
DE TS LD + A+V + + GRT + H+ S D+ FD G+
Sbjct: 551 DEATSALDTESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ E +L+ + ++ + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 825 P-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
P G+ G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 876 VDTGRTVVCTIHQPS 890
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 103 DVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGP 162
DV M +EAN D+ +K L DTLVG+ + +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRN 544
Query: 163 ALALFMDEISTGLDSST 179
L +DE ++ LD+ +
Sbjct: 545 PKILLLDEATSALDTES 561
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 24/232 (10%)
Query: 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 736
+L F + +S KE+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 737 AGRKTGGYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLP 793
++ + G ++I G + I G Q + T+ E++ Y
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTM 493
Query: 794 PEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 853
E++ ++ + +++L +LVG G + LS Q++R+ IA LV NP I+ +
Sbjct: 494 DEIEKAVKEANAYDF--IMKLPHQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLL 550
Query: 854 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFESFDEGI 901
DE TS LD + A+V + + GRT + H+ S D+ FD G+
Sbjct: 551 DEATSALDTESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
+ E +L+ + ++ + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 825 P-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
P G+ G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 876 VDTGRTVVCTIHQPS 890
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 103 DVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGP 162
DV M +EAN D+ +K L DTLVG+ + +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRN 544
Query: 163 ALALFMDEISTGLDSST 179
L +DE ++ LD+ +
Sbjct: 545 PKILLLDEATSALDTES 561
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 69
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ ++MR + + + GRTV+ H+ S
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS 199
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 185 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 71
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ ++MR + + + GRTV+ H+ S
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS 201
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ ++MR + + + GRTV+ H+ S
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS 205
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 18/204 (8%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGNITISGYPKK 757
K++ L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G Q P +T +E++ A+ ++ E + +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIH-- 131
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 874
L P E LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 132 -HVLNHFPRE--LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 875 TVDTGRTVVCTIHQPSIDIFESFD 898
+ G T++ H P+ DIF D
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIAD 209
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
R +SGGQ++RV +V L +DE + LD+ ++ +S R + + ++L
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTL 194
Query: 203 LQPAPETYDLF---DDIILLSDAQIVYQGPRELVLD 235
L + + D+F D + +L ++V G E + D
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ Q+ P +TVYE++ + ++ P+ + + + + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P + LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 137 RYPAQ--LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFT 762
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ Q+ P +TVYE++ + ++ P+ + + + + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P + LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 138 RYPAQ--LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 71
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ ++MR + + + GRTV+ H+ S
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS 201
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIHQPS 890
+ ++MR + + + GRTV+ H+ S
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS 205
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L D+ ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALD----YESEHVIMRNMHK 190
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+ T R G+ Q P +T E++ + + E ++ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 875 -TVDTGRTVVCTIHQPSIDIF 894
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---- 757
++ +L G+S + PG AL+G SG GK+T++ +L + + G I I G K
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 758 QETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-- 815
+ T ++I+ ++ + ++ E+++Y L P + Q +EE L ++
Sbjct: 1149 EHTRSQIAIVSQEPTLFD--CSIAENIIYG----LDPSSVTMAQ---VEEAARLANIHNF 1199
Query: 816 --PLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
L + G+ G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1200 IAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 872 VRNTVDTGRTVVCTIHQ 888
+ + GRT + H+
Sbjct: 1260 L-DRAREGRTCIVIAHR 1275
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L G++ G AL+G SG GK+T++ +L + + G ITI G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG----------- 479
Query: 765 SGYCEQNDIHSPF------VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ DI+ F V E L++ + + + + EE++ ++
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIE--ENISLGKEGITREEMVAACKMANAE 534
Query: 819 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ + LP G+ G LS Q++R+ IA LV NP I+ +DE TS LDA + IV
Sbjct: 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 870 RTVRNTVDTGRTVVCTIHQPS 890
+ + + GRT + H+ S
Sbjct: 595 QAL-DKAAKGRTTIIIAHRLS 614
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
+TLVGD + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 179
+T VGD + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 28/198 (14%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 761
+L ++ + G A +G+SG GK+TL++++ + +G I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
G +Q++I TV E++L L P D EE++E ++ +
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENIL----LGRPTATD--------EEVVEAAKMANAHDFI 460
Query: 822 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ LP GE G LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
Query: 873 RNTVDTGRTVVCTIHQPS 890
+ + RT + H+ S
Sbjct: 521 -DVLSKDRTTLIVAHRLS 537
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 108 AAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALF 167
A E EA + + + ++ L DT VG+ V+ +SGGQK+R++ + + L
Sbjct: 442 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILI 500
Query: 168 MDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQ 227
+DE ++ LD + + I++ + +L+ ++ T D I+++ + IV
Sbjct: 501 LDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556
Query: 228 GP-RELV 233
G REL+
Sbjct: 557 GTHRELI 563
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 756
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+ T R G+ Q P +T E++ + + E ++ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 875 -TVDTGRTVVCTIHQPSIDIF 894
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 38/200 (19%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 69
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 864 AAAIVMRTVRNTVDTGRTVV 883
+ ++MR + + + GRTV+
Sbjct: 174 SEHVIMRNM-HKICKGRTVI 192
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 185 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 38/200 (19%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 755
D ++L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 756 KKQETFTRISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETQKM 803
R G Q+++ +P ++V E ++Y+A L + SE ++
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 804 FIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 864 AAAIVMRTVRNTVDTGRTVV 883
+ ++MR + + + GRTV+
Sbjct: 180 SEHVIMRNM-HKICKGRTVI 198
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIH- 192
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + I +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 193 ILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESM 240
I G VI ++ T D II++ +IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQE 759
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 760 TFTRISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
G Q P +TV ++ L +R P +E + M EL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM------ELLDKVGLK 129
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 130 DKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 187
Query: 879 GRTVVCTIHQ 888
G T+V H+
Sbjct: 188 GMTMVVVTHE 197
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 758
+D +L +S +P + A G SG GK+T+ +L + G ITI G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 759 --ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
E + G+ Q D T+ E+L Y E D E++ ++++L
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYGL------EGDYTD-----EDLWQVLDLAF 117
Query: 817 LRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 867
R + +P GE G +S QR+RL IA + NP I+ +DE T+ LD+ + ++
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 868 VMRTVRNTVDTGRTVVCTIHQPS 890
V + + +++ GRT + H+ S
Sbjct: 178 VQKAL-DSLMKGRTTLVIAHRLS 199
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQE 759
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 760 TFTRISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
G Q P +TV ++ L +R P +E + M EL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM------ELLDKVGLK 150
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 878
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 151 DKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208
Query: 879 GRTVVCTIHQ 888
G T+V H+
Sbjct: 209 GMTMVVVTHE 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFT 762
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
R G QN +TVY+++ + + P+ + + + + EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 881
P E LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFPHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 882 VVCTIH 887
V H
Sbjct: 199 SVFVTH 204
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGGQ++RV + L DE +D+ ++ +RQ +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 205 PAPETYDLFDDIILLSDAQI--------VYQGPRELVLDFF 237
E ++ D +++L + + VY+ P L + F
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASF 245
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 758
D L G++ + G +TA++G +G GK+TL G + + G I + Y +K
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 759 ETFTRIS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPE-----VDSETQKMFIEEIME 810
R S G Q+ + F +VY+ + + A ++LP + VD+ ++ IE + +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD 138
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 139 ----KPTH----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 871 -TVRNTVDTGRTVVCTIHQPSIDI 893
V + G T++ H IDI
Sbjct: 185 LLVEMQKELGITIIIATH--DIDI 206
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 121 DYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 180
D LK G+E + D+ +S GQKKRV ++V L +DE + GLD
Sbjct: 125 DNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 181 FQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDAQIVYQG-PREL 232
+I+ + + L T +I+ T+D+ D++ ++ + +++ QG P+E+
Sbjct: 180 SEIMKLLVEMQKELGITIIIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 699 LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNITIS 752
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 753 GYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF-IEEIM-E 810
P+ + + Q + P V+ + L +A + ET F +++M E
Sbjct: 70 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 871 TVRNTVDTGRTVVCTIHQPSI 891
V + D R+ + H I
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRI 207
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L+ VS + G AL+G SG+GK+T+ ++ + +G+I + G+ + T +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 766 GY---CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
+ QN +H T+ ++ Y+A E + + ME +E P Q L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ--AHAMEFIENMP--QGLD 471
Query: 823 GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 880
+ GE+G LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 881 TVVCTIHQPSIDIFESFDE 899
TV+ H+ S E DE
Sbjct: 531 TVLVIAHRLS--TIEQADE 547
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHI 193
DT++G+ +SGGQ++RV ++ A L +DE ++ LD+ + +I+ +
Sbjct: 471 DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE----RAIQAALDE 525
Query: 194 LNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQG 228
L + ++ T + D+I+++ + +I+ +G
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 699 LEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNITIS 752
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 753 GYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF-IEEIM-E 810
P+ + + Q + P V+ + L +A + ET F +++M E
Sbjct: 89 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 145
Query: 811 LVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 870
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 871 TVRNTVDTGRTVVCTIH 887
V + D R+ + H
Sbjct: 206 GVNSLRDGKRSFIIVTH 222
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYCEQND 772
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
P ++V E++ + L E + ++ E+++L L LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 887
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D + +SGGQ++RV G +V +DE + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
+I + E L D I++L ++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYCEQND 772
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
P ++V E++ + L E + ++ E+++L L LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 887
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D + +SGGQ++RV G +V +DE + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
+I + E L D I++L ++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFTRISGYC 768
+ G L+G SG GKTT + ++AG + G I + P+K R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPP--EVDSETQKMFIEEIMELVELNPLRQSLVGLPG 826
Q+ P +TVY+++ + LR P E+D + + E+ EL L + L P
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEID--------QRVREVAELLGLTELLNRKPR 138
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
E LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 139 E--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQ 189
R +SGGQ++RV G +V MDE + LD+ ++ +++
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGY------PKKQ 758
+S + G L+G SG GKTT + +AG T G YI N+ PK++
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ Y P TVY+++ + LR P+ + + + + E + L EL
Sbjct: 85 DVAXVFQSYALY-----PHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL---- 135
Query: 819 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
L P E LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 136 --LNRKPRE--LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 761
+LN +S + PG + ++G SG GKTTL+ LAG + +G I++SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 762 TRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R GY Q + P +TVY ++ Y + + ++ IE ++EL ++ L
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGISELAG 133
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 863
P E LS Q++R +A L +P +I +DEP S LD +
Sbjct: 134 R---YPHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 701 DKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG------Y 754
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 755 PKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
P ++ + Q + P VT+ L + +L EV +++ +EL++
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ +S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 132 D---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 110 ATEGQEANVLTDYYLKV---LGLEVCDDTLVGDEMVRGISGGQKKRVTTGEMMVGPALAL 166
A G+E V +++ KV L L D++ + + G SGG+KKR +++V
Sbjct: 107 AKLGREVGV-AEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165
Query: 167 FMDEISTGLDSSTTFQI---VNSIR----QNIHILNGTAVISLLQPAPETYDLFDDIILL 219
+DE +GLD + VN++R + I + +++ +QP D + ++
Sbjct: 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVM 217
Query: 220 SDAQIVYQGPRELVLDFFESMGFKCPERK 248
D ++V G EL L+ E+ G++ + K
Sbjct: 218 MDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 661 AIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTA 720
AI+ + LP S++F+ V + E+ +L+GV+ + +PG L A
Sbjct: 325 AIEEADNALALPNVEGSVSFENVEFRY-----------FENTDPVLSGVNFSVKPGSLVA 373
Query: 721 LMGVSGAGKTTLMDV---LAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPF 777
++G +G+GK+TLM++ L + G + + K ++ IS ++ + S
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLRGHISAVPQETVLFSG- 431
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLP---------GES 828
T+ E+L W R D EI+E ++ + ++ LP G
Sbjct: 432 -TIKENL---KWGREDATDD---------EIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISL 202
R SGGQK+R++ +V L +D+ ++ +D T +I++ +++ G +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFII 534
Query: 203 LQPAPETYDLFDDIILLSDAQIVYQGPRELVLD 235
Q P T L D I++L + ++ G + +L+
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFTRISGYCEQND 772
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
P ++V E++ + L E + ++ E+++L L LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 887
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D + +SGGQ++RV G +V +D+ + LD++ Q+ I + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQG-PREL 232
+I + E L D I++L ++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 17/191 (8%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----YPKKQET 760
+L G+S + + G +++G SG+GK+TL+ +L G + + G Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 761 F---TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL 817
R G+ Q P +T E+++ P+ +++ + ++ L EL L
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-L 130
Query: 818 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 877
L P E LS +++R+ IA L P ++F DEPT LD+ VM +
Sbjct: 131 GDKLSRKPYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 878 TGRTVVCTIHQ 888
G ++V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 114 QEANVLTDYYLKVLGLEVCDDTLVGDEMVRG---ISGGQKKRVTTGEMMVGPALALFMDE 170
+EA +Y L LGL GD++ R +SGG+++RV + + LF DE
Sbjct: 115 KEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 171 ISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV 225
+ LDS+ T ++++ + I G I ++ E +L + + D ++V
Sbjct: 167 PTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 700 EDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 756
E+ + L V+ + G ++ G SG+GK+T ++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 757 KQETFTRIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL 814
+ T R G+ Q P +T E++ + E ++ E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 815 NPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 874
+ + LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 875 -TVDTGRTVVCTIHQPSIDIF 894
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 27/203 (13%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 759
+ +L G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 760 TFTRISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + +H+ V E LL+ R T+ +EEI + +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 819 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ G P GE+G LS QR+ + +A L+ P ++ +D+ TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 870 RTVRNTVD-TGRTVVCTIHQPSI 891
R + + + RTV+ HQ S+
Sbjct: 197 RLLYESPEWASRTVLLITHQLSL 219
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 760
+++L G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQYE 85
Query: 761 ----FTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP 816
+++ ++ + ++ E++ Y TQK +EEI +
Sbjct: 86 HRYLHRQVAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKSG 132
Query: 817 LRQSLVGLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 864
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 95 GIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVT 154
G+ P ++ AA G + + GL DT V DE +SGGQ++ V
Sbjct: 114 GLTQKPTMEEITAAAVKSGAHSFIS--------GLPQGYDTEV-DEAGSQLSGGQRQAVA 164
Query: 155 TGEMMVGPALALFMDEISTGLDSSTTFQI 183
++ L +D+ ++ LD+++ Q+
Sbjct: 165 LARALIRKPCVLILDDATSALDANSQLQV 193
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQETFTR 763
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 76
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
++ Q + + S + LP E+D+ + + EL+ SLVG
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL-------SLVG 129
Query: 824 LPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 877
L + S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 130 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 878 TGRTVVCTIHQPSIDIFESFDEGIPGVEN 906
G T++ H+ +D+ + + + + N
Sbjct: 190 LGLTILLITHE--MDVVKRICDCVAVISN 216
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D +SGGQK+RV + L DE ++ LD +TT I+ ++ +I+ G
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLT 193
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQ 227
++ + + D + ++S+ +++ Q
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFTRISGY 767
+ G + ++G +G GK+T + +LAG+ N + G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVEL-NPLRQSLVGLPG 826
+ + +V + + + L + D ET K+ EE+++ +EL N L + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLEREI----- 156
Query: 827 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 887 HQPSI 891
H ++
Sbjct: 216 HDLAV 220
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 711 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYC 768
G + G + ++G +G GKTT + LAG T G I ++T++ P+ Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YI 356
Query: 769 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGES 828
+ + YE +Y ++ + + E+++ + + L V +
Sbjct: 357 KAD---------YEGTVYELLSKI--DASKLNSNFYKTELLKPLGIIDLYDREV-----N 400
Query: 829 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 889 PSIDIFESFD-----EGIPG 903
+ I D EG PG
Sbjct: 461 DVLXIDYVSDRLXVFEGEPG 480
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQ 758
K +L G+S G + L+G +GAGKTT + +++ +G +T+ G +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPH 84
Query: 759 ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
E IS E+ Y ++ +LR + + EI E+VE R
Sbjct: 85 EVRKLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSS----SEIEEMVE----R 129
Query: 819 QSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
+ + GE S S ++L IA L+ NP + +DEPTSGLD A V + +
Sbjct: 130 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189
Query: 873 RNTVDTGRTVVCTIH 887
+ G T++ + H
Sbjct: 190 KQASQEGLTILVSSH 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 9/189 (4%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQETFTR 763
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
++ Q + S + LP E+D+ + + EL+ L L
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 824 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 882
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T+
Sbjct: 160 YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 883 VCTIHQPSI 891
+ H+ +
Sbjct: 218 LLITHEXDV 226
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D +SGGQK+RV + L D+ ++ LD +TT I+ ++ +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQ 227
++ + + D + ++S+ +++ Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFTRISGYCEQND 772
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 773 IHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLST 832
I P +TVYE+L A+ R D E K +E I L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 833 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 883
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 26/204 (12%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+LQ + E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 753 GYPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
G P + + T+++ Y Q PF T W L +T+ + ++
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 810 ELVEL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 863
+ L + L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIH 887
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 41/192 (21%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 759
L+ +S G ++G +GAGKT ++++AG +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 760 TFTRISGYCEQNDIHSPFVTVYESLLYSAWLRL---PPEVDSETQKMFIEEIMELVELNP 816
+ QN P + V ++L + ++ P V + + IE L++ NP
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 817 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 876
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 877 DTGRTVVCTIHQ 888
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGG+++RV +V L +DE + LD T + + +H N V+ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-ENAREMLSVLHKKNKLTVLHITH 186
Query: 205 PAPETYDLFDDIILLSDAQIVYQG-PRELVLDFFESMGFKCPERKGVADFL 254
E + D I ++ D +++ G P E+ F+ P VA F+
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQETFTR 763
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 764 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVG 823
++ Q + + S + LP E+D+ + + EL+ SLVG
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL-------SLVG 152
Query: 824 LPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 877
L + S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 878 TGRTVVCTIHQPSIDIFESFDEGIPGVEN 906
G T++ H+ +D+ + + + + N
Sbjct: 213 LGLTILLITHE--MDVVKRICDCVAVISN 239
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 144 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLL 203
+SGGQK+RV + L D+ ++ LD +TT I+ ++ +I+ G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLIT 221
Query: 204 QPAPETYDLFDDIILLSDAQIVYQ 227
+ D + ++S+ +++ Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQ 245
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 693 MKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 752
M+LQ + E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 753 GYPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
G P + + T+++ Y Q PF T W L +T+ + ++
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 810 ELVEL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 863
+ L + L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 864 AAAIVMRTVRNTVDTGRTVVCTIH 887
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 746
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 747 GNITISGYPKKQETFTRISGYC--EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
G + P+ + T + E N SP SL Y W+ P+ + +K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 746
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 747 GNITISGYPKKQETFTRISGYC--EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMF 804
G + P+ + T + E N SP SL Y W+ P+ + +K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
+I+E ++L+ L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)
Query: 721 LMGVSGAGKTTLMDVLAG--RKTGGYITGN-ITISGYPKKQETFTRISGYCEQNDIHSPF 777
L+G +GAGK+ ++++AG + G + N I+ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 778 VTVYESLLYSAWLRLPPEVDSETQKMFIEE---IMELVELNPLRQSLVGLPGESGLSTEQ 834
++VY ++ Y LR V+ + + + E I L++ P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 873
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753
+LQ + E L +SG R G + L+G +GAGK+TL+ AG +G G+I +G
Sbjct: 6 QLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 754 YPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
P + + T+++ Y Q PF T W L +T+ + ++
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 811 LVEL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 864
+ L + L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 865 AAIVMRTVRNTVDTGRTVVCTIH 887
+ + + + G +V + H
Sbjct: 169 QSALDKILSALCQQGLAIVXSSH 191
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQ---- 758
L+GVS + G +T ++G +G+GK+TL++V+ G G N I+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 759 ---ETFTRISGYCEQNDIHS-------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEI 808
TF E + + P + SL Y W+ P+ + +K F +I
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF--KI 137
Query: 809 MELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 860
+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 138 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 44/238 (18%)
Query: 671 LPFEPHSLTFDEVTY----------SVDMPKEMKLQGILED----KLMLLNGVSGAFRPG 716
LP E + DE+ + S D+ +MK I++ +L++ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 717 VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQETFTRISGYCEQNDIH 774
+ ++G +G GKTT +L G T G +T I Y K Q F G +Q +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLEN 353
Query: 775 SPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQ 834
+ ++L S+W F EE+ + + L+ L +S V + LS +
Sbjct: 354 AS----KDALSTSSW--------------FFEEVTKRLNLHRLLESNV-----NDLSGGE 390
Query: 835 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 891
++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISG---YCEQ 770
+ + ++G +G GKTT++ +LAG + N + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 771 NDIHSPFVTVYESLLY----SAWLR-----LPPEVDSETQKMFIEEIMELVELNPLRQSL 821
+++S + + + Y S +L+ + ++D +K +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 881
+ GL +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 882 VVC 884
+V
Sbjct: 191 IVV 193
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 694 KLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 753
+LQ + E L +SG R G + L+G +GAGK+TL+ AG +G G+I +G
Sbjct: 6 QLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 754 YPKKQETFTRIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIME 810
P + + T+++ Y Q PF T W L +T+ + ++
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 811 LVEL-NPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 864
+ L + L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 865 AAIVMRTVRNTVDTGRTVVCTIH 887
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVXSSH 191
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTR-----ISGYCEQ 770
G AL+G +G+GK+T+ +L G+I I G K + R I G Q
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--KNVNKYNRNSIRSIIGIVPQ 100
Query: 771 NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR-QSLVGLPGESG 829
+ I T+ ++LY EV T+ ++ + +E P + ++VG G
Sbjct: 101 DTILFN-ETIKYNILYGKLDATDEEVIKATKS---AQLYDFIEALPKKWDTIVGNKGMK- 155
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRL 214
Query: 890 S 890
S
Sbjct: 215 S 215
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF---QIVNSIRQN 190
DT+VG++ ++ +SGG+++R+ ++ + DE ++ LDS T + + V +R+N
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 191 IHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
++ +S + A + IILL+ +IV +G + +L
Sbjct: 205 RTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLL 241
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 759
+ +L G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 760 TFTRISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + +H+ V E LL+ R T+ +EEI + +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 819 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ G P GE+G LS QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 870 RTVRNTVD-TGRTVVCTIHQPSI 891
R + + + RTV+ Q S+
Sbjct: 197 RLLYESPEWASRTVLLITQQLSL 219
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCE--QNDI 773
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG--LS 831
H TV ++ Y+ E E +M M+ + N + L + GE+G LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYA--MDFI--NKMDNGLDTIIGENGVLLS 482
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 892 DIFESFDE 899
E DE
Sbjct: 541 -TIEQADE 547
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHI 193
DT++G+ V +SGGQ++R+ ++ + L +DE ++ LD+ + +I+ +
Sbjct: 471 DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDE 525
Query: 194 LNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
L ++ T + D+I+++ D IV +G +L
Sbjct: 526 LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCE--QNDI 773
G AL+G SG+GK+T+ ++ + G I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESG--LS 831
H TV ++ Y+ + E E +M M+ + N + L + GE+G LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAYA--MDFI--NKMDNGLDTVIGENGVLLS 482
Query: 832 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 892 DIFESFDE 899
E DE
Sbjct: 541 -TIEKADE 547
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 134 DTLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHI 193
DT++G+ V +SGGQ++R+ ++ + L +DE ++ LD+ + +I+ +
Sbjct: 471 DTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDE 525
Query: 194 LNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMG 241
L ++ T + D+I+++ D IV +G D E G
Sbjct: 526 LQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHN---DLLEHRG 570
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 702 KLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 759
+ +L G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 760 TFTRISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLR 818
+ + +H+ V E LL+ R T+ +EEI + +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 819 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 869
+ G P GE+G L+ QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 870 RTVRNTVD-TGRTVVCTIHQPSI 891
R + + + RTV+ Q S+
Sbjct: 197 RLLYESPEWASRTVLLITQQLSL 219
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 766 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEVDSETQKMFIEEIMELV--ELNPLRQSLV 822
G Q F V++ + + A P+ D +++ ME V + + + +
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 138
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 139 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 193
Query: 883 VCTIHQ 888
+ H
Sbjct: 194 ILISHD 199
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 205 PAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
+ D +++L + V+ G R ++F E
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS 765
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 766 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEVDSETQKMFIEEIMELV--ELNPLRQSLV 822
G Q F V++ + + A P+ D +++ ME V + + + +
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 136
Query: 823 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 882
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 137 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191
Query: 883 VCTIHQ 888
+ H
Sbjct: 192 ILISHD 197
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 205 PAPETYDLFDDIILLSDAQIVYQGPRELVLDFFES 239
+ D +++L + V+ G R ++F E
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 228
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 30/197 (15%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQETF 761
+L ++ +PG AL+G +G+GKTT++++L + G I + G K+ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
G Q+ I TV E+L Y P D EEI E +L +
Sbjct: 428 RSSIGIVLQDTILFS-TTVKENLKYGN----PGATD--------EEIKEAAKLTHSDHFI 474
Query: 822 VGLP----------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 871
LP GE LS QR+ L I +ANP I+ +DE TS +D + +
Sbjct: 475 KHLPEGYETVLTDNGED-LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533
Query: 872 VRNTVDTGRTVVCTIHQ 888
+ ++ G+T + H+
Sbjct: 534 MWKLME-GKTSIIIAHR 549
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKK----QE 759
+L +S G L G++GAGKTTL+++L + +G + + G P K E
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 760 TFTRISGYCEQNDIH--SPFVTVYESLLYSAW--LRLPPEVDSETQKMFIEEIMELVELN 815
T + G+ + + V + ++ A+ + + ++D E + ++++LV +
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXS 152
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
Q +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 153 AKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%)
Query: 145 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 204
+S G+K+RV + G L +DE + GLD +++ + A I +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 205 PAPETYDLFDDIILLSDAQIVYQGPRELVL 234
E F I+LL D Q + QG E +L
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 716 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDI 773
G + A++G +G GK+TL+D+L G R G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQF-F 75
Query: 774 HSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTE 833
SPF S+L + +++ + + + + L+ L + + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 890
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 40/243 (16%)
Query: 673 FEPHSLTFDEVTYSVDMPKEMKLQ--GILED-KLMLLNGVSGAFRPGVLTALMGVSGAGK 729
F P+ + F +++ VD+ +E ++ +++D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 730 TTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYS 787
TT + +LAG T G + ++T++ P Q G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 438
Query: 788 AWLRLPPEVDSE--TQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
++DS + E+++ + + L V LS + +R+ IA L+
Sbjct: 439 ------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLL 487
Query: 846 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD-----EG 900
+ I +DEP++ LD V R +R+ ++ + + I D EG
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
Query: 901 IPG 903
PG
Sbjct: 548 EPG 550
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFTRISGY 767
+ G++ ++G +G GKTT + +LAG+ N + + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
+ + +V + + L +VD + F E + EL N L + L
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------ 226
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Query: 888 QPSI 891
++
Sbjct: 287 DLAV 290
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D + +SGG+ +RV ++ A F DE S+ LD ++ IR+ + N
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR---LANEGK 279
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFKCPERKGVADFLQ 255
+ +++ D D+I +VY P + F + G R G+ +FLQ
Sbjct: 280 AVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-FSKPKG----TRNGINEFLQ 326
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 40/243 (16%)
Query: 673 FEPHSLTFDEVTYSVDMPKEMKLQ--GILED-KLMLLNGVSGAFRPGVLTALMGVSGAGK 729
F P+ + F +++ VD+ +E ++ +++D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 730 TTLMDVLAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYS 787
TT + +LAG T G + ++T++ P Q G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 424
Query: 788 AWLRLPPEVDSE--TQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELV 845
++DS + E+++ + + L V LS + +R+ IA L+
Sbjct: 425 ------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLL 473
Query: 846 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD-----EG 900
+ I +DEP++ LD V R +R+ ++ + + I D EG
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
Query: 901 IPG 903
PG
Sbjct: 534 EPG 536
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFTRISGY 767
+ G++ ++G +G GKTT + +LAG+ N + + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 160
Query: 768 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGE 827
+ + +V + + L +VD + F E + EL N L + L
Sbjct: 161 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------ 212
Query: 828 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 887
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
Query: 888 QPSI 891
++
Sbjct: 273 DLAV 276
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 139 DEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTA 198
D + +SGG+ +RV ++ A F DE S+ LD ++ IR+ + N
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR---LANEGK 265
Query: 199 VISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFFESMGFKCPERKGVADFLQ 255
+ +++ D D+I +VY P + F + G R G+ +FLQ
Sbjct: 266 AVLVVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-FSKPKG----TRNGINEFLQ 312
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETFT 762
LNG++ + G L A++G G GK++L+ L + G++ I G Y +Q
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 763 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLV 822
QND ++ E++L+ L P + I+ L +L L
Sbjct: 78 -------QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDR 118
Query: 823 GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
GE G LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 34/229 (14%)
Query: 671 LPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKT 730
L F+ + F+ V +S +E L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYADGRET------------LQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 731 TLMDVLAGRKTGGYITGNITISGYPKKQETFTRIS---GYCEQ-----NDIHSPFVTVYE 782
T++ +L + +G I I G Q T + G Q ND T+ +
Sbjct: 95 TILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND------TIAD 146
Query: 783 SLLYSAWLRLPPEVDSETQKMFIEE-IMELVELNPLRQSLVGLPGESGLSTEQRKRLTIA 841
++ Y EV++ Q I + IM E + GL LS +++R+ IA
Sbjct: 147 NIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK----LSGGEKQRVAIA 202
Query: 842 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 890
++ P II +DE TS LD + ++ V RT + H+ S
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLS 250
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 135 TLVGDEMVRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHIL 194
T VG+ ++ +SGG+K+RV ++ + +DE ++ LD+S I S+ +
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV--CA 238
Query: 195 NGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVL 234
N T ++ + + T D I+++ D IV +G E +L
Sbjct: 239 NRTTIVVAHRLS--TVVNADQILVIKDGCIVERGRHEALL 276
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 31/196 (15%)
Query: 714 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQN-- 771
RPG + L+G +G GK+T + +LAG++ G P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GR--FDDPPEWQEIIKYFRGSELQNYF 156
Query: 772 ------DIHSPFVTVYESLLYSA----------WLRLPPEVDSETQKMFIEEIMELVELN 815
DI + Y + A L+L E E K +I +I++L N
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI-KILQLE--N 213
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
L++ + LS + +R I + V + DEP+S LD + + +R+
Sbjct: 214 VLKRDI------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 876 VDTGRTVVCTIHQPSI 891
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 39/203 (19%)
Query: 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 735
L D + + P K QG +LN G F + +MG +G GKTTL+ +
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDF-----VLNVEEGEFSDSEILVMMGENGTGKTTLIKL 397
Query: 736 LAG--RKTGGYITGNITISGYPKKQETFTRISGYCEQ---NDIHSPFVTVYESLLYSAWL 790
LAG + G + +S P Q+ + G Q I F+ L
Sbjct: 398 LAGALKPDEGQDIPKLNVSMKP--QKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455
Query: 791 RLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 850
R+ +D E Q LS + +R+ I + L I
Sbjct: 456 RIDDIIDQEVQH---------------------------LSGGELQRVAIVLALGIPADI 488
Query: 851 IFMDEPTSGLDARAAAIVMRTVR 873
+DEP++ LD+ I + +R
Sbjct: 489 YLIDEPSAYLDSEQRIICSKVIR 511
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 648 FSQLLSQREVTVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLN 707
+ +LL ++ GA + + +P + SVD +++ + G E L
Sbjct: 612 YDELLRNKDSITGAYLSGRESIEIP---------AIRRSVDPRRQLTVVGAREHNL---R 659
Query: 708 GVSGAFRPGVLTALMGVSGAGKTTLMD-----VLAGRKTG 742
G+ +F GVLT++ GVSG+GK+TL++ VLA R G
Sbjct: 660 GIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNG 699
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 798 SETQKMFIEEIMELVE----LNPLRQSLV---------GLPGESGLSTEQRKRLTIAVEL 844
SE M IEE E E ++ ++LV G P + LS + +R+ +A EL
Sbjct: 820 SEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPT-LSGGEAQRVKLASEL 878
Query: 845 VANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 898
+ + +DEPT+GL ++ + VD G TV+ H ++D+ ++ D
Sbjct: 879 QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEH--NLDVIKTSD 933
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISGYPKKQET 760
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 761 FTRISGYCEQ-NDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQ 819
R Q +++ PF +V E + R P + Q + +++M + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVIQMG---RAPYGGSQDRQAL--QQVMAQTDCLALAQ 136
Query: 820 SLVGLPGESGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 873
+ LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 RDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 874 N-TVDTGRTVVCTIH 887
T V C +H
Sbjct: 192 QLTRQEPLAVCCVLH 206
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 761
+L +S + PG L+G +G+GK+TL+ G I I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 762 TRISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPEV---DSETQKMFIE-EIMELVELN 815
+ G Q + ++S R L P D E K+ E + ++E
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 816 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 875
P + V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 876 VDTGRTVVC 884
++C
Sbjct: 202 FADCTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 42/190 (22%)
Query: 721 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFTRISGYCEQ--------N 771
++G +G+GKTTL+ ++G +GNI I+G +K + R S + N
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVN 91
Query: 772 DIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP--LRQSLVGLPGESG 829
DI V +YE E+ + +F+E +++ ++L LR+ L L +G
Sbjct: 92 DI----VYLYE------------ELKGLDRDLFLE-MLKALKLGEEILRRKLYKL--SAG 132
Query: 830 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 889
S R L +A + P I+ +DEP +DA ++ R ++ + G+ + H+
Sbjct: 133 QSVLVRTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE- 184
Query: 890 SIDIFESFDE 899
+D+ + E
Sbjct: 185 -LDMLNLYKE 193
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 807 EIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 866
E + +V LNP L P + LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 135 EKLRMVRLNP-EAVLNSYPLQ--LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
Query: 867 IVMR 870
+++
Sbjct: 192 HIIQ 195
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 830 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 887 HQPSIDIFESFDEGIP-GVENIKD-GYNPATWMLEVTAKS 924
H ++D+ ++ D I G E K+ GY AT E AK+
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 834 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 891
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 830 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 887 HQPSIDIFESFD 898
H ++D+ ++ D
Sbjct: 906 H--NLDVIKTAD 915
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 750 TISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
T GY K+E+ + G ++ + ++V E+L + L L E +++ ++ + EI
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLELT-EKEAQIARLILREIR 482
Query: 810 ELVE-LNPLRQSLVGLPGESG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 865
+ + L + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 866 AIVMRTVRNTVDTGRTVVCTIH 887
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSMRDLGNTLIVVEH 564
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 830 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 887 HQPSIDIFESFD 898
H ++D+ ++ D
Sbjct: 604 H--NLDVIKTAD 613
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 830 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 886
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 887 HQPSIDIFESFD 898
H ++D+ ++ D
Sbjct: 906 H--NLDVIKTAD 915
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 750 TISGYPKKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIM 809
T GY K+E+ + G ++ + VT E+L + L L E +++ ++ + EI
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELT-EKEAQIARLILREIR 482
Query: 810 ELVE-LNPLRQSLVGLPGESG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 865
+ + L + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 866 AIVMRTVRNTVDTGRTVVCTIH 887
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSXRDLGNTLIVVEH 564
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 799 ETQKMFIEEIMELVELNPLRQS-----LVGLPGESGLSTEQRKRLTIAVELVANP---SI 850
E F +E L+ LR+ +G P LS + +R+ +A EL + ++
Sbjct: 696 EAHDFFADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTV 754
Query: 851 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 888
+DEPT+GL + R + VD G TV+ H+
Sbjct: 755 YVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L ++ G + G +G GKTTL+ ++ + G I +G P T++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 765 SG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSL 821
G + + I ++V + L A L + K I + +E VE+ L++ L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL 131
Query: 822 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 872
GE LS +R+ +A L+ N I +D+P +D + V++++
Sbjct: 132 ----GE--LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 742
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2YOO|A Chain A, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|B Chain B, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|C Chain C, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|D Chain D, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|3ZBY|A Chain A, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|B Chain B, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|C Chain C, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|D Chain D, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|E Chain E, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|F Chain F, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
Length = 407
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 173 TGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA-PETYDLFDDIILLSDAQIVYQGPRE 231
GL ++TT+Q V +N + + T I QP P D+ D LL + R+
Sbjct: 41 NGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRK 100
Query: 232 LVLDFFESMGFKCPE------RKGVADFLQEVTS 259
V+D +S+G C +G DF++++ +
Sbjct: 101 RVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAA 134
>pdb|2WVY|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 737
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 875 TVDTGRTVVCTIHQPSIDIFESFDEGIPGVENI-KDGYNPATWMLEVTAKSQELTLEIDF 933
TVD + + IHQ E G G E K GY P + E TAK TLE +
Sbjct: 398 TVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAK----TLEYAY 453
Query: 934 TD--IYKGSELYRRNKALIEELSRPAPGSKDLYFPTH 968
D I + +E + + + ++ + AP ++LY+P H
Sbjct: 454 ADWCIARFAESLGK-QDIADQYYQKAPNYRNLYYPEH 489
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
S +C QN P T+ E+++ ++ D + I+ +++ + +
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY-------DEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 825 PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
GE G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 705 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRI 764
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 765 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGL 824
S +C QN P T+ E+++ ++ D + I+ +++ + +
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY-------DEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 825 PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
GE G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 706 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 742
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 39 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 805 IEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 861
IEE ++ L+P +V GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|3CVZ|A Chain A, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|B Chain B, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|C Chain C, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|D Chain D, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
Length = 273
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 641 DITVKDSFSQLLSQREV---TVGAIQPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQG 697
DI KD+F + ++ V A + K V F S ++ Y V+M G
Sbjct: 117 DIATKDTFGMVSKTQDSEGKNVAATKALKVKDVATFGLKSGGSEDTGYVVEMKA-----G 171
Query: 698 ILEDKLMLLNGVSGAFRPGVLTAL--MGVSGAGKTTLMD---VLAGRKTGGYITGNITIS 752
+EDK G G G+ L G+ AGK T +D L TGG + +S
Sbjct: 172 AVEDKY----GKVGDSTAGIAINLPSTGLEYAGKGTTIDFNKTLKVDVTGGSTPSAVAVS 227
Query: 753 GYPKKQETFTRISG 766
G+ K +T SG
Sbjct: 228 GFVTKDDTDLAKSG 241
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 709 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 740
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,814,051
Number of Sequences: 62578
Number of extensions: 1358276
Number of successful extensions: 3108
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2815
Number of HSP's gapped (non-prelim): 263
length of query: 1247
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1137
effective length of database: 8,089,757
effective search space: 9198053709
effective search space used: 9198053709
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)