Query 000867
Match_columns 1247
No_of_seqs 293 out of 4566
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 15:53:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000867.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_638-642//hhsearch_pdb/000867hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 639.8 45.3 771 1-899 446-1284(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 554.5 53.6 201 675-899 1028-1238(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 419.8 26.7 185 676-899 356-541 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 410.6 26.2 186 676-900 286-472 (538)
5 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 410.3 28.7 187 677-900 269-456 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 402.5 30.2 167 1-233 463-633 (986)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 396.4 29.0 198 1-233 46-296 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 390.7 22.9 172 704-900 361-538 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 317.7 13.3 199 675-899 413-621 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 308.7 31.1 182 703-899 597-876 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=639.79 Aligned_cols=771 Identities=19% Similarity=0.213 Sum_probs=363.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 989837999996898969829989998223699988946898764---31278765544668889989999999762389
Q 000867 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~LTVrEnL~f~a~l~~~ 77 (1247)
.++|+||||||||||+++|+|+++|. +|+|.+||.++++... |+.+|||+|++++++ .||||||.|+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---- 517 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKE---- 517 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCT----
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHCC----
T ss_conf 78998058985778888754565164---4861579965011259998504666587533207-861678864155----
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630225845998850899998646888885421001335699999980995445653368754336624331247988
Q 000867 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
+.+.+++.++|.... . ++. +-.||+++||.||++|. +||||||||++|||
T Consensus 518 ---------------------~~~~~~v~~a~~~a~-l-----~~~--i~~lp~G~~T~vGe~G~-~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 518 ---------------------GITREEMVAACKMAN-A-----EKF--IKTLPNGYNTLVGDRGT-QLSGGQKQRIAIAR 567 (1321)
T ss_dssp ---------------------TCCHHHHHHHHHHTT-C-----HHH--HHHSTTTTSSEESSSSC-CCCHHHHHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHCC-C-----HHH--HHCCCCCCCCEECCCCC-CCCHHHHHHHHHHH
T ss_conf ---------------------220999999998756-5-----468--87088888607558988-77777879999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 87359708666279856037999999999999978239889999538982599520137885699078764810289999
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv~~G~~~~l~~~f 237 (1247)
|++++|+|++||||||+||+.++..|.+.+.+.. .++|+++..| +.++...+|+|++|++|+++++|+++++.+.
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaH--rls~i~~aD~Iivl~~G~ive~Gth~eL~~~- 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAH--RLSTIRNADLIISCKNGQVVEVGDHRALMAQ- 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECS--CTTTTTTCSEEEEEETTEEEEEECHHHHHTT-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC--CHHHHHHCCEEEEEECCEEECCCCHHHHHHH-
T ss_conf 8725999899845544688789999999999984--7988999736--3878986898999639965136899999985-
Q ss_pred HHCCCCCCCCCCHHHHHHHHCC--CHHHHHH-HHCCCCCCCC---------CCHHHHHH---HHHHCHHHHHHHHHHCCC
Q ss_conf 8479999999992457864069--4012344-3104788765---------89879999---986313446678740487
Q 000867 238 ESMGFKCPERKGVADFLQEVTS--RKDQQQY-WVHKEMPYRF---------VTAQEFSE---AFQSFTVGQKLADELRTP 302 (1247)
Q Consensus 238 ~~~G~~~p~~~~~a~~l~~~~~--~~~~~~~-~~~~~~~~~~---------~~~~e~~~---~~~~~~~~~~~~~~~~~~ 302 (1247)
....++....... ..+.... ....+..... ....+..+ ..+...............
T Consensus 643 ---------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1321)
T 4f4c_A 643 ---------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDE 713 (1321)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHH
T ss_conf ---------32799999962212222332334433223211122222342222222110221110132124567740257
Q ss_pred CCCCCCCCCC-------C-CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHHHC----CCCC-
Q ss_conf 6667889853-------3-35665665999999999999999640738999999999999998--876533----3468-
Q 000867 303 FDKCKSHPAA-------L-TTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMALV--SMTLFF----RTKM- 367 (1247)
Q Consensus 303 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~--~~~l~~----~~~~- 367 (1247)
+........ . .......+.. +.+......+.............+.+ ...+++ ....
T Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 784 (1321)
T 4f4c_A 714 -KEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAG 784 (1321)
T ss_dssp ---CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSS
T ss_pred -HHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -7753154038999999997078631099--------9999987789999999999999999999999999999987517
Q ss_pred CCCCCCCCCCEEHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88876665310137799999--9999667999987402424677410588612368997999984199998999987765
Q 000867 368 HKDSVSDGGIYVGATFFAVM--MTMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTY 445 (1247)
Q Consensus 368 ~~~~~~~~~~~~g~~f~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~l~~~p~~~~~~~~~~~i~Y 445 (1247)
+.........+....+..+. ...+..+..............+ ....+...+...|+.|++.
T Consensus 785 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~---------lr~~l~~~il~~~~~ffd~-------- 847 (1321)
T 4f4c_A 785 NPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRD---------LRNKLFRNVLSQHIGFFDS-------- 847 (1321)
T ss_dssp CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHTSCSSSTTS--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCCCCHHHCC--------
T ss_conf 93455667899999999999999999999999999999999999---------9999988873499333216--------
Q ss_pred HCCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--
Q ss_conf 4045456667899999999-------------9999999999999988248878899989999999987503200678--
Q 000867 446 YVIGFDPNIGRLFKQFLLL-------------LLVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSRD-- 510 (1247)
Q Consensus 446 ~l~gl~~~~~~~~~~~l~~-------------~l~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~-- 510 (1247)
-+...|++.+++... .+...+...++.++.....+..++..+.. .++++++..++....
T Consensus 848 ----~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~--~~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 848 ----PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIA--ILPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp ----GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHTSCCS
T ss_pred ----CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf ----788848888502505999999999999999998653777702213786899999999--88899999999999999
Q ss_pred --CCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH---CCCCCCCCCHHHHHHHHHHHH-HHH
Q ss_conf --96431013362489999999999855189964434688874425788630---686667742146799999999-999
Q 000867 511 --DIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSNETLGVQVLKS---RGFFPHAYWYWLGLGATIGFV-LLF 584 (1247)
Q Consensus 511 --~i~~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~l~~---~~~~~~~~~~w~~~~~li~~~-~~~ 584 (1247)
.....-..........-..+++...+.++..-... .. -...++. ..+.. ..+.+........+. +..
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~-~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 994 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFY-EN-----FCEKLDIPHKEAIKE-AFIQGLSYGCASSVLYLLN 994 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHH-HH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998889889999996279888614148899-99-----999999999999999-9999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 9999999860466788-8511104875553477678875445688999888788754-3111110122100000012566
Q 000867 585 NIGFTLSLTFLNQFEK-PRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESE-DITVKDSFSQLLSQREVTVGAI 662 (1247)
Q Consensus 585 ~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 662 (1247)
.+.+.+.......... ...... ................. ........ .....+........ . ...
T Consensus 995 ~~~~~~g~~lv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~a~~ri~~~l~~-~---~~~ 1061 (1321)
T 4f4c_A 995 TCAYRMGLALIITDPPTMQPMRV-LRVMYAITISTSTLGFA--------TSYFPEYAKATFAGGIIFGMLRK-I---SKI 1061 (1321)
T ss_dssp HHHHHHHHHTTSSSSCSSCHHHH-HHHHHHHHTTTSSTTGG--------GGHHHHHHHHHHHHHHHHHHHHC-C---CSS
T ss_pred HHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHC-C---CCC
T ss_conf 99998757887537654214789-99999998778899999--------99999999999999989998607-6---657
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 76777876688780899996999991670122104555642101141789957729999959999789999988689999
Q 000867 663 QPKKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 742 (1247)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~ 742 (1247)
+........+.....++|+|++++|+.. ...++|+|+|+.++|||++||+||||||||||+++|.|..++
T Consensus 1062 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1062 DSLSLAGEKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CTTCCCSBCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 7766778788888818999879857999----------988212451699889899999899998199999999568638
Q ss_pred CEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 7289999994811784---33343389962689889981799999997660699999999999999999998199754--
Q 000867 743 GYITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-- 817 (1247)
Q Consensus 743 ~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-- 817 (1247)
.+|+|.+||.|+.. ..+|+.++||+|++.++. .|++||+.|+. .|.+.+. +.++++++..++.+.
T Consensus 1132 --~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~ 1201 (1321)
T 4f4c_A 1132 --LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIA 1201 (1321)
T ss_dssp --SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHH
T ss_pred --CCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHHH
T ss_conf --99789999998654999999854599878997327-23999974549---9999999----99999999829849997
Q ss_pred -----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf -----334346888888898887999999998519958899599999999999999999999873898899994169968
Q 000867 818 -----RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 892 (1247)
Q Consensus 818 -----~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~ 892 (1247)
-|+.+|.. ..+||||||||+||||||+++|+||+||||||+||+.|+..|++.|++.. +++|+|+++|+.+.
T Consensus 1202 ~Lp~GldT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT- 1278 (1321)
T 4f4c_A 1202 ELPEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT- 1278 (1321)
T ss_dssp TSTTTTCSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-
T ss_pred CCCCCCCCEECCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH-
T ss_conf 1767899982388-91569999999999999971799899968111578999999999999973-99989996068999-
Q ss_pred HHHHHHC
Q ss_conf 9984104
Q 000867 893 IFESFDE 899 (1247)
Q Consensus 893 i~~~fD~ 899 (1247)
...+|+
T Consensus 1279 -i~~aD~ 1284 (1321)
T 4f4c_A 1279 -VMNADC 1284 (1321)
T ss_dssp -TTTCSE
T ss_pred -HHHCCE
T ss_conf -996999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=554.52 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=157.2
Q ss_pred CCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 80899996999991670122104555642101141789957729999959999789999988689999728999999481
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~ 754 (1247)
...++++|++++++.. ....+|+|+|+.++|||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSS
T ss_pred CCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE
T ss_conf 7857999989977999----------987002030599769988999889999789999999468678--9977989999
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 1784---3334338996268988998179999999766069999999999999999999819975-------43343468
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-------LRQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~ 824 (1247)
++.. ..+++.++||+|+..++ ..|++|++.+.... ...+.++ +.+.++..++.+ -.|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred ECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 800078999970268987787406-66699997466877---8999999----999999839599997270424561178
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 888888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
. ...||||||||++|||+|+++|+||+|||||+|||..++..+++.+++. .+|+|+|+++|+++. + ...|+
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCE
T ss_conf 8-8933899999999999997499999986875557999999999999986-799989999558799-9-80998
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=419.78 Aligned_cols=185 Identities=23% Similarity=0.288 Sum_probs=148.1
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999916701221045556421011417899577299999599997899999886899997289999994811
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
..++++|++..+. ...|+++++.+++||.++|+||||||||||+++|+|...+ .+|+|.+
T Consensus 356 ~~l~~~~l~~~~~--------------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG--------------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS--------------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----
T ss_pred EEEEEECEEEEEC--------------CEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----
T ss_conf 2899913098744--------------3489935153279989999999998999999999669888--8628999----
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78433343389962689889981799999997660699999999999999999998199754334346888888898887
Q 000867 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 756 ~~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
.+.++|++|+....+.+||.|.+....... ....+.++++++.+++.+..+..++ .||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHH
T ss_conf ------027999805766778984999997531258-------7789999999987699337549922-----3799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999999851995889959999999999999999999987-38988999941699689984104
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~-~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
||++||++|+.+|++|+|||||+|||..+...+.+.|++++ ..|.|||+++|+.. .+....|+
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adr 541 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 541 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 99999999974899899968744789999999999999999747989999909899-99986999
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=410.58 Aligned_cols=186 Identities=24% Similarity=0.292 Sum_probs=147.4
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999916701221045556421011417899577299999599997899999886899997289999994811
Q 000867 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1247)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1247)
..++++|+++.+. ...|+++++.+++||.++|+||||||||||+++|+|...+ .+|+|.+
T Consensus 286 ~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----
T ss_pred EEEEEEEEEEEEC--------------CEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----
T ss_conf 1899930799989--------------9899907441289989999889999999999999679989--9718998----
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78433343389962689889981799999997660699999999999999999998199754334346888888898887
Q 000867 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1247)
Q Consensus 756 ~~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 835 (1247)
...++|++|+....+.+||.|.+......... ..+.++++++.+++.+..+..++ .||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHH
T ss_pred ------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHH
T ss_conf ------74699982677678888599999864036887-------89999999997499156539944-----4899999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 99999999851995889959999999999999999999987-389889999416996899841048
Q 000867 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~-~~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
||++||++|+.+|++|+|||||+|||..+...+.+.|++++ +.|.|||+++|+.. ++....|+.
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv 472 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRL 472 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 99999999972899899939801089999999999999999867989999939899-999968999
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=410.34 Aligned_cols=187 Identities=24% Similarity=0.255 Sum_probs=149.1
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699999167012210455564210114178995772999995999978999998868999972899999948117
Q 000867 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1247)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1247)
.+++++++..+. ...|+.+++.+++||.++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 84333433899626898899817999999976606999999999999999999981997543343468888888988879
Q 000867 757 KQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRK 836 (1247)
Q Consensus 757 ~~~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrk 836 (1247)
.++|++|+.......||+|++.+....... . ....++++++.+++.+..+..++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDALS--T----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTTC--T----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCCC--H----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf -------567614000345477799999875531121--1----69999999987599778628932-----27999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 99999998519958899599999999999999999999873-89889999416996899841048
Q 000867 837 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 837 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
|++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|+.. ++..+.|+.
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri 456 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRI 456 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=402.49 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=127.0
Q ss_pred CEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 989837999996898969829-98999822369998894689876431278765544-6688899899999997623898
Q 000867 1 MTLLLGPPCSGKTTLLLALAG-KLDSKLKFSGRVTYNGHGMDEFVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQGVG 78 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G-~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d-~l~~~LTVrEnL~f~a~l~~~~ 78 (1247)
+++|+||||||||||+++|+| .. +|.+... ...++|++|+. ...+.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i------------~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~-- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV------------DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG-- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS------------TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC--
T ss_conf 899999999879999999948986------------7976635---41699973564324557809999998--6127--
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 7630225845998850899998646888885421001335699999980995-445653368754336624331247988
Q 000867 79 SRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLE-VCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~l~L~-~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1247)
. ...++.+++.+||. +..+..++ .||||||||++||+
T Consensus 524 --------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 524 --------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALAR 561 (986)
T ss_dssp --------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHH
T ss_pred --------H-----------------------------HHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHH
T ss_conf --------9-----------------------------99999999986998446439802-----07999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEE-EECCCCHH
Q ss_conf 87359708666279856037999999999999978239889999538982599520137885699078-76481028
Q 000867 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIV-YQGPRELV 233 (1247)
Q Consensus 158 al~~~~~IllLDEpTSgLDs~s~~~I~~~L~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~iL~~G~vv-~~G~~~~l 233 (1247)
+++.+|++++|||||+|||+.++..+++.+++ .+.++++ ++|...++...+|+|++|.+|+++ +.|+.++.
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCEEECCCCCHHHH
T ss_conf 99649999999797667999999999999986----7998999-979889999868999999799442677999999
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=396.45 Aligned_cols=198 Identities=19% Similarity=0.240 Sum_probs=131.4
Q ss_pred CEEEECCCCCCHHHHH---------------------HHHHCCCCCCC-C---EEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9898379999968989---------------------69829989998-2---236999889468987643127876554
Q 000867 1 MTLLLGPPCSGKTTLL---------------------LALAGKLDSKL-K---FSGRVTYNGHGMDEFVPQRTAAYISQH 55 (1247)
Q Consensus 1 lt~IlGpsGSGKSTLL---------------------~~L~G~~~~~~-~---~sG~V~i~G~~~~~~~~~~~i~yv~Q~ 55 (1247)
+++|+||||||||||+ +.+.|...|+. . ..|.+.++|.+... ..++.++|++|.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~-~~~~~ig~v~q~ 124 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR-NPRSTVGTVTEI 124 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTC
T ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHHHC-CCHHCEEEEECH
T ss_conf 9999899999988871510123211100011002445553034567756321356415744720102-550000465112
Q ss_pred CCC-------------------CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 466-------------------8889989999999762389876302258459988508999986468888854210013
Q 000867 56 DVH-------------------IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEA 116 (1247)
Q Consensus 56 d~l-------------------~~~LTVrEnL~f~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1247)
..+ ++.+||+||+.+...+.. ...... .... ..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~-----------~~~~~~-----------~~~~---~~~~~ 179 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLEL-----------TEKEAQ-----------IARL---ILREI 179 (670)
T ss_dssp C-------------------------CC---------------------------------------------------C
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-----------CHHHHH-----------HHHH---HHHHH
T ss_conf 5667777753111123444333457859999997520364-----------314567-----------7888---89999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE--EEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3569999998099544-56533687543366243312479888735970--86662798560379999999999999782
Q 000867 117 NVLTDYYLKVLGLEVC-DDTLVGDEMVRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNSIRQNIHI 193 (1247)
Q Consensus 117 ~~~~d~~l~~l~L~~~-~~T~VG~~~~~~LSGGQKrRlsIA~al~~~~~--IllLDEpTSgLDs~s~~~I~~~L~~~~~~ 193 (1247)
.. ...+++.+||.+. .+..+ ..|||||||||+||||++.+|+ +++|||||+|||+.++.++++.+++...
T Consensus 180 ~~-~~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 180 RD-RLGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HH-HHHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HH-HHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf 99-9989997598434414970-----0189999999999999962899878999798568999999999999999997-
Q ss_pred CCCEEEEEECCCCHHHHHHCCCEEEE------CCCCEEEECCCCHH
Q ss_conf 39889999538982599520137885------69907876481028
Q 000867 194 LNGTAVISLLQPAPETYDLFDDIILL------SDAQIVYQGPRELV 233 (1247)
Q Consensus 194 ~~~t~ii~i~q~~~e~~~lfD~I~iL------~~G~vv~~G~~~~l 233 (1247)
.+.|+++ ++|.... ...+|+|++| .+|++++.|+.+++
T Consensus 253 ~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 253 LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf 4998999-9578799-962998999446665669889974089998
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=390.71 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=135.5
Q ss_pred CEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 1011417899577-----29999959999789999988689999728999999481178433343389962689889981
Q 000867 704 MLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778 (1247)
Q Consensus 704 ~iL~~vs~~~~~G-----~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~d~~~~~l 778 (1247)
.+++++++.+.+| |.++|+||||||||||+++|+|...+. +|+ +.. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--885------866----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 79999999766069999999999999999999819975433434688888889888799999999851995889959999
Q 000867 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1247)
Q Consensus 779 tv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTs 858 (1247)
||+|.+... .+.. ... ...++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~~-~~~----~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ-FLN----PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST-TTS----HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHCC-CCC----HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--5303-246----8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 999999999999999987-389889999416996899841048
Q 000867 859 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEG 900 (1247)
Q Consensus 859 gLD~~~~~~i~~~l~~~~-~~~~tvi~~~Hqp~~~i~~~fD~~ 900 (1247)
|||..+...+.+.|+++. +.|.|||+++|+.. ++..+.|+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrv 538 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKV 538 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 899999999999999999757998999968899-999868999
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=317.69 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=162.9
Q ss_pred CCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 80899996999991670122104555642101141789957729999959999789999988689999728999999481
Q 000867 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1247)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll~~l~g~~~~~~~~G~i~~~g~ 754 (1247)
...++|+|++++++.. +.+.+|+|+|+.++||+++||+||||||||||+++|.|..+ +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 1784---333433899626898899817999999976606999999999999999999981997-------543343468
Q 000867 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQSLVGL 824 (1247)
Q Consensus 755 ~~~~---~~~~~~~~~v~q~d~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~ 824 (1247)
++.. ..+++.++||+|++.++ ..|++||+.|+. ++.+.+ .+.++++..++. +-.||.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 888888988879999999985199588995999999999999999999998738988999941699689984104
Q 000867 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 825 ~~~~~lSgGqrkr~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
.+ ..||||||||++||||++++|+|++||||||+||+.++..+++.|+++. +|+|+|+++|+++ .....|+
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~ 621 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADL 621 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCE
T ss_conf 98-8777778799999998725999899845544688789999999999984-7988999736387--8986898
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=308.74 Aligned_cols=182 Identities=26% Similarity=0.380 Sum_probs=126.5
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCC--CCC--EEE------EEEEECCCCCCCCCC--
Q ss_conf 2101141789957729999959999789999---------9886899--997--289------999994811784333--
Q 000867 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRK--TGG--YIT------GNITISGYPKKQETF-- 761 (1247)
Q Consensus 703 ~~iL~~vs~~~~~G~~~ai~G~sGsGKSTll---------~~l~g~~--~~~--~~~------G~i~~~g~~~~~~~~-- 761 (1247)
...|+|+|+.+++|++++|+|+||||||||+ +.+.+.. .++ ... +.+.++..++.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 44336531287189599999258888154577777789998740344566653333551011425763156556655556
Q ss_pred ------------------------------------------CCEEEEECCCCCCCC-----------------------
Q ss_conf ------------------------------------------433899626898899-----------------------
Q 000867 762 ------------------------------------------TRISGYCEQNDIHSP----------------------- 776 (1247)
Q Consensus 762 ------------------------------------------~~~~~~v~q~d~~~~----------------------- 776 (1247)
.+-.|++.++...+|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 43022367889998612668775045554311114666443236763487741016761563220146435666554301
Q ss_pred ---------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---------81799999997660699999999999999999998199754334346888888898887999999998519
Q 000867 777 ---------FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847 (1247)
Q Consensus 777 ---------~ltv~e~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrkr~~ia~~l~~~ 847 (1247)
.+|+.|++.|.... . ....+.++++.+||.... .|.+ ...||||||||+.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~-------~--~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI-------P--SIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHCCHHHHHHHHHCC-------H--HHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHC
T ss_conf 56777877407799999987515-------0--589999999981886333---1687-157999999999999999628
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9---588995999999999999999999998738988999941699689984104
Q 000867 848 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 899 (1247)
Q Consensus 848 p---~il~lDEpTsgLD~~~~~~i~~~l~~~~~~~~tvi~~~Hqp~~~i~~~fD~ 899 (1247)
| ++++|||||+|||..+...+++.|+++.+.|.|||+++|++. .....|+
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADr 876 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADH 876 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCE
T ss_conf 7889789997988899999999999999999966998999937999--9972999
Done!