Query 000868
Match_columns 1247
No_of_seqs 218 out of 278
Neff 6.9
Searched_HMMs 46136
Date Tue Apr 2 00:39:49 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1931 Putative transmembrane 100.0 2E-129 5E-134 1166.1 50.3 1049 9-1247 1-1155(1156)
2 KOG4386 Uncharacterized conser 100.0 5.7E-40 1.2E-44 369.1 1.4 611 559-1239 113-803 (809)
3 PF07919 Gryzun: Gryzun, putat 99.9 3.5E-23 7.6E-28 257.7 44.7 453 699-1215 23-553 (554)
4 PF12584 TRAPPC10: Trafficking 99.7 3.5E-17 7.5E-22 168.1 11.6 104 1130-1235 25-147 (147)
5 PF11817 Foie-gras_1: Foie gra 99.4 1.1E-12 2.4E-17 146.7 12.2 99 551-649 148-246 (247)
6 PF12742 Gryzun-like: Gryzun, 98.3 1.8E-06 3.9E-11 72.1 6.6 52 1160-1214 6-57 (57)
7 PF06159 DUF974: Protein of un 97.1 0.05 1.1E-06 61.3 20.9 114 966-1079 104-235 (249)
8 PF08626 TRAPPC9-Trs120: Trans 96.7 0.25 5.4E-06 67.7 26.4 281 565-855 449-823 (1185)
9 PF14938 SNAP: Soluble NSF att 95.6 0.057 1.2E-06 62.0 10.4 88 561-648 94-182 (282)
10 KOG2625 Uncharacterized conser 95.5 0.023 5E-07 60.4 5.7 210 969-1215 100-329 (348)
11 PF13424 TPR_12: Tetratricopep 93.2 0.47 1E-05 42.9 8.4 65 582-646 6-74 (78)
12 PRK10803 tol-pal system protei 91.3 1 2.2E-05 51.4 9.8 73 577-652 176-248 (263)
13 KOG1953 Targeting complex (TRA 89.1 58 0.0013 42.8 22.9 155 616-777 557-762 (1235)
14 PF12688 TPR_5: Tetratrico pep 88.3 2.6 5.6E-05 42.2 8.9 65 582-649 39-103 (120)
15 KOG1586 Protein required for f 87.7 1.5 3.4E-05 48.1 7.3 61 562-622 94-155 (288)
16 PF13424 TPR_12: Tetratricopep 87.7 1.3 2.8E-05 40.0 5.9 51 562-612 26-77 (78)
17 PF13176 TPR_7: Tetratricopept 85.9 1.4 3.1E-05 33.9 4.4 28 585-612 3-30 (36)
18 PF14938 SNAP: Soluble NSF att 85.6 7.4 0.00016 44.7 12.1 111 562-673 136-247 (282)
19 PF13432 TPR_16: Tetratricopep 85.2 2.7 5.9E-05 36.4 6.5 58 586-649 2-59 (65)
20 TIGR02795 tol_pal_ybgF tol-pal 85.0 6 0.00013 37.9 9.5 67 582-651 40-106 (119)
21 PF14559 TPR_19: Tetratricopep 84.6 0.9 2E-05 39.7 3.1 56 564-619 7-64 (68)
22 PF13174 TPR_6: Tetratricopept 82.0 1.9 4.1E-05 31.8 3.6 30 584-613 3-32 (33)
23 PF13414 TPR_11: TPR repeat; P 81.9 3.1 6.8E-05 36.4 5.5 59 583-647 5-64 (69)
24 KOG1931 Putative transmembrane 81.3 0.37 8.1E-06 62.0 -0.9 233 542-783 408-653 (1156)
25 PF12895 Apc3: Anaphase-promot 81.2 2.2 4.7E-05 39.2 4.4 55 583-644 27-81 (84)
26 COG1729 Uncharacterized protei 81.1 9.1 0.0002 43.3 9.9 75 576-653 173-247 (262)
27 cd00189 TPR Tetratricopeptide 80.4 6.7 0.00015 34.3 7.3 55 582-642 35-89 (100)
28 COG2956 Predicted N-acetylgluc 80.1 11 0.00024 43.5 10.2 85 552-648 192-276 (389)
29 PF07719 TPR_2: Tetratricopept 79.9 3 6.5E-05 30.9 4.0 29 584-612 4-32 (34)
30 PF13374 TPR_10: Tetratricopep 79.1 3.7 8E-05 31.8 4.5 31 583-613 4-34 (42)
31 PF00515 TPR_1: Tetratricopept 75.3 5.7 0.00012 29.7 4.4 29 583-611 3-31 (34)
32 PF12862 Apc5: Anaphase-promot 73.6 19 0.00041 34.2 8.5 52 581-632 41-92 (94)
33 cd00189 TPR Tetratricopeptide 70.8 12 0.00026 32.6 6.3 59 584-648 3-61 (100)
34 PF12735 Trs65: TRAPP traffick 70.0 18 0.00039 42.2 9.0 50 1180-1229 246-302 (306)
35 PF13181 TPR_8: Tetratricopept 69.8 9.5 0.0002 28.3 4.5 30 583-612 3-32 (34)
36 PF13432 TPR_16: Tetratricopep 68.7 13 0.00029 32.0 5.8 48 564-611 13-61 (65)
37 COG1470 Predicted membrane pro 65.3 3.3E+02 0.0072 33.4 18.5 135 701-862 282-428 (513)
38 PF13371 TPR_9: Tetratricopept 64.4 17 0.00036 32.0 5.7 58 587-650 1-58 (73)
39 PF13525 YfiO: Outer membrane 63.9 10 0.00022 41.2 5.1 52 584-638 144-195 (203)
40 KOG2002 TPR-containing nuclear 63.6 51 0.0011 43.3 11.5 75 561-637 433-512 (1018)
41 TIGR02552 LcrH_SycD type III s 61.7 52 0.0011 32.5 9.4 61 582-648 52-112 (135)
42 smart00028 TPR Tetratricopepti 60.9 11 0.00025 25.8 3.4 27 584-610 4-30 (34)
43 TIGR03302 OM_YfiO outer membra 59.6 25 0.00055 38.6 7.4 59 585-646 170-228 (235)
44 PF13525 YfiO: Outer membrane 58.7 1.1E+02 0.0023 33.3 12.0 56 576-634 37-92 (203)
45 PF13371 TPR_9: Tetratricopept 57.3 18 0.0004 31.8 4.7 30 582-611 30-59 (73)
46 KOG1840 Kinesin light chain [C 57.0 95 0.0021 38.8 12.2 105 544-649 287-398 (508)
47 PF07919 Gryzun: Gryzun, putat 56.0 5.1E+02 0.011 32.6 19.4 64 992-1055 28-105 (554)
48 PF14559 TPR_19: Tetratricopep 55.4 20 0.00043 31.0 4.6 53 592-650 2-54 (68)
49 PF12739 TRAPPC-Trs85: ER-Golg 55.3 31 0.00066 42.1 7.6 62 576-637 203-264 (414)
50 PF13414 TPR_11: TPR repeat; P 54.7 21 0.00045 31.1 4.6 47 564-610 19-67 (69)
51 PF09976 TPR_21: Tetratricopep 54.4 75 0.0016 32.3 9.3 66 576-644 43-108 (145)
52 PF13428 TPR_14: Tetratricopep 54.3 22 0.00047 28.5 4.2 32 584-615 4-35 (44)
53 PF04781 DUF627: Protein of un 54.3 53 0.0011 32.5 7.5 65 587-651 2-70 (111)
54 PLN03088 SGT1, suppressor of 52.9 89 0.0019 37.3 10.9 79 565-649 19-98 (356)
55 PF09986 DUF2225: Uncharacteri 52.1 53 0.0012 36.3 8.2 35 581-615 165-199 (214)
56 PRK10866 outer membrane biogen 51.2 45 0.00096 37.6 7.6 96 545-645 139-236 (243)
57 TIGR02795 tol_pal_ybgF tol-pal 50.9 60 0.0013 30.8 7.6 63 584-649 5-67 (119)
58 PF10602 RPN7: 26S proteasome 49.6 28 0.0006 37.3 5.3 49 565-613 20-68 (177)
59 PF07720 TPR_3: Tetratricopept 49.1 30 0.00064 27.1 4.0 20 586-605 6-25 (36)
60 PRK02603 photosystem I assembl 48.0 1.5E+02 0.0031 31.1 10.5 68 564-637 51-122 (172)
61 PRK10866 outer membrane biogen 45.6 34 0.00074 38.5 5.5 55 578-635 66-120 (243)
62 KOG1840 Kinesin light chain [C 45.1 94 0.002 38.9 9.6 87 562-648 388-477 (508)
63 PF12862 Apc5: Anaphase-promot 44.7 83 0.0018 29.8 7.2 60 590-649 7-69 (94)
64 TIGR02521 type_IV_pilW type IV 44.1 1E+02 0.0022 32.6 8.8 26 584-609 102-127 (234)
65 TIGR02521 type_IV_pilW type IV 43.5 95 0.0021 32.7 8.5 52 582-639 66-117 (234)
66 KOG1585 Protein required for f 43.4 1.6E+02 0.0035 33.2 9.9 84 561-648 91-174 (308)
67 KOG1155 Anaphase-promoting com 43.4 2.4E+02 0.0053 34.6 12.0 116 544-670 432-553 (559)
68 PF05753 TRAP_beta: Translocon 43.4 64 0.0014 34.8 6.9 76 1130-1215 32-111 (181)
69 PRK15359 type III secretion sy 42.9 2.2E+02 0.0047 29.1 10.6 81 564-650 40-121 (144)
70 TIGR03504 FimV_Cterm FimV C-te 42.4 36 0.00078 27.9 3.7 25 585-609 3-27 (44)
71 PF07721 TPR_4: Tetratricopept 40.8 43 0.00092 23.8 3.5 23 583-605 3-25 (26)
72 PRK02603 photosystem I assembl 40.3 92 0.002 32.6 7.6 58 583-643 37-94 (172)
73 PF14853 Fis1_TPR_C: Fis1 C-te 40.0 48 0.001 28.3 4.2 28 583-610 3-30 (53)
74 PF09976 TPR_21: Tetratricopep 39.7 92 0.002 31.7 7.2 52 581-639 85-136 (145)
75 KOG2076 RNA polymerase III tra 38.5 70 0.0015 41.7 7.1 87 563-650 464-555 (895)
76 PF12895 Apc3: Anaphase-promot 38.0 51 0.0011 30.1 4.5 42 565-606 42-83 (84)
77 TIGR02552 LcrH_SycD type III s 36.7 1.1E+02 0.0025 30.0 7.2 52 582-639 18-69 (135)
78 TIGR03302 OM_YfiO outer membra 36.5 1E+02 0.0023 33.7 7.6 67 564-633 49-119 (235)
79 PF13174 TPR_6: Tetratricopept 34.7 47 0.001 24.1 3.1 27 221-247 4-30 (33)
80 KOG0543 FKBP-type peptidyl-pro 33.7 72 0.0016 38.2 5.8 66 586-651 213-287 (397)
81 PF05843 Suf: Suppressor of fo 33.0 4.9E+02 0.011 29.8 12.5 96 565-670 18-116 (280)
82 KOG2758 Translation initiation 32.6 1.3E+02 0.0029 34.9 7.4 101 536-643 91-199 (432)
83 PF04190 DUF410: Protein of un 32.4 1.7E+02 0.0036 33.4 8.4 77 593-671 2-80 (260)
84 PLN03098 LPA1 LOW PSII ACCUMUL 32.0 93 0.002 38.1 6.5 49 562-610 89-141 (453)
85 TIGR00990 3a0801s09 mitochondr 32.0 1.7E+02 0.0037 37.5 9.5 73 564-642 415-488 (615)
86 PF10300 DUF3808: Protein of u 30.2 2E+02 0.0044 35.7 9.3 71 562-637 281-356 (468)
87 PF13176 TPR_7: Tetratricopept 29.4 61 0.0013 24.8 3.0 24 221-244 3-26 (36)
88 KOG0547 Translocase of outer m 29.3 1.3E+02 0.0028 37.0 6.9 58 586-649 120-177 (606)
89 cd02680 MIT_calpain7_2 MIT: do 29.2 1E+02 0.0022 28.3 4.8 27 589-615 14-40 (75)
90 PRK11788 tetratricopeptide rep 28.6 2.6E+02 0.0056 33.0 9.7 58 585-648 184-241 (389)
91 KOG1126 DNA-binding cell divis 28.4 1.9E+02 0.0041 36.8 8.4 85 545-629 315-411 (638)
92 PRK11788 tetratricopeptide rep 28.2 2.5E+02 0.0054 33.1 9.5 61 171-242 34-94 (389)
93 PF10633 NPCBM_assoc: NPCBM-as 26.8 2.6E+02 0.0056 25.3 7.1 59 1133-1201 2-60 (78)
94 CHL00033 ycf3 photosystem I as 26.6 2.6E+02 0.0057 29.0 8.3 32 583-614 74-105 (168)
95 KOG2076 RNA polymerase III tra 25.3 1.8E+02 0.004 38.2 7.6 56 583-643 416-471 (895)
96 PF13429 TPR_15: Tetratricopep 25.0 1.2E+02 0.0026 34.4 5.7 72 565-644 200-271 (280)
97 KOG3865 Arrestin [Signal trans 24.4 2.6E+02 0.0057 32.4 7.8 67 1133-1206 207-281 (402)
98 TIGR00990 3a0801s09 mitochondr 24.4 1.6E+02 0.0035 37.7 7.3 70 564-639 143-212 (615)
99 TIGR02917 PEP_TPR_lipo putativ 24.4 1.9E+02 0.0041 37.8 8.1 45 565-610 787-832 (899)
100 CHL00033 ycf3 photosystem I as 24.1 2.4E+02 0.0052 29.3 7.4 64 583-649 37-100 (168)
101 TIGR02917 PEP_TPR_lipo putativ 24.0 2.3E+02 0.005 37.0 8.8 59 583-648 705-763 (899)
102 KOG2908 26S proteasome regulat 24.0 9.2E+02 0.02 28.7 12.1 98 561-661 95-198 (380)
103 TIGR03504 FimV_Cterm FimV C-te 23.4 94 0.002 25.5 3.1 26 220-245 2-27 (44)
104 cd05804 StaR_like StaR_like; a 23.2 2.8E+02 0.0061 32.2 8.6 61 582-644 149-209 (355)
105 PF12690 BsuPI: Intracellular 23.2 6.1E+02 0.013 23.6 9.1 29 743-771 50-81 (82)
106 KOG0545 Aryl-hydrocarbon recep 23.1 1.3E+02 0.0028 34.0 5.0 112 540-652 131-261 (329)
107 PF03704 BTAD: Bacterial trans 22.5 3.2E+02 0.007 27.5 7.8 48 584-637 65-112 (146)
108 PF13512 TPR_18: Tetratricopep 22.2 1.7E+02 0.0038 30.2 5.5 40 576-615 42-81 (142)
109 KOG1586 Protein required for f 21.9 3.5E+02 0.0076 30.5 8.0 61 592-652 25-85 (288)
110 PF13374 TPR_10: Tetratricopep 21.5 1.1E+02 0.0024 23.3 3.2 28 220-247 5-32 (42)
111 PF13428 TPR_14: Tetratricopep 21.0 1.3E+02 0.0029 23.9 3.6 27 220-246 4-30 (44)
112 PF04733 Coatomer_E: Coatomer 20.3 2.6E+02 0.0055 32.5 7.2 55 581-641 201-255 (290)
113 PF10366 Vps39_1: Vacuolar sor 20.2 91 0.002 30.6 3.0 27 584-610 42-68 (108)
No 1
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=100.00 E-value=2.4e-129 Score=1166.10 Aligned_cols=1049 Identities=28% Similarity=0.381 Sum_probs=783.7
Q ss_pred hhccccCCeeEEEEeCCCCChHHHHHHHhhhCCCCceeeecCCCCCceeeeeeeeEEEccchhhccCCCcccccccccCc
Q 000868 9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP 88 (1247)
Q Consensus 9 ~~~~~~~~~v~i~y~Dp~~lf~~i~~~l~~~lPl~nlhWk~~~~~~~~i~~L~v~fv~~~~~~~~~~~p~~~~~~l~~~P 88 (1247)
|.|+++|.+.+|.|+||++||++|+++|++++||+|+||++++|+.++..+||++|+|+.++.+.. .+.+.+.++..|
T Consensus 1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~--~~~~d~sll~~P 78 (1156)
T KOG1931|consen 1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQ--DKSGDKSLLEFP 78 (1156)
T ss_pred CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhccc--cccCCchhhhCc
Confidence 579999999999999999999999999999999999999988877777667999999999998854 245678889999
Q ss_pred eEEEEEEecCChHhHHHcchHHHHhhhc----CCCCceEEEEEcCCC-CCchhhhhhhHHHHHHHhhhcCCCCCceEEEe
Q 000868 89 YATVVLVTCEDLDEFKTILKPRLKLITQ----NDEREWFIVFVSKAH-PNNDQANKMAKKVFAKLEVDFNSKKRERCCKF 163 (1247)
Q Consensus 89 ~l~i~~v~C~d~d~Yks~vR~~ik~w~~----~~~~eWlIv~v~~~~-~~~~~~~k~~~svldKik~DF~~~~~dRc~~l 163 (1247)
|+||+||.|.|+|+||++|||+++.|++ ++.++||||+|..++ +++++...-.+||+||||.||++|+.|||+.|
T Consensus 79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l 158 (1156)
T KOG1931|consen 79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL 158 (1156)
T ss_pred eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence 9999999999999999999999999987 689999999999653 34443222346999999999999999999999
Q ss_pred ccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 000868 164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240 (1247)
Q Consensus 164 ~~~~---~~~~~w~~l~~klK~~il~sFd~r~~~yee~ir~~~~~r~~~~wnf~~~FilkE~LA~~fe~~~L~edAL~~Y 240 (1247)
+.+. +++|+||+|++|||.++|++||+|+.+|||+||.++++|++||||||+||++||+||++|||++|+||||.||
T Consensus 159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy 238 (1156)
T KOG1931|consen 159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY 238 (1156)
T ss_pred ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7742 3457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cC-CC-cccCCCCCCCCCc---cccCCCCChhhhhhhhcCCcchhhhHhhHHHHHHHHHHHhCChHH
Q 000868 241 DELELCYLETVN-MN-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE 314 (1247)
Q Consensus 241 deL~~~~~~~~~-~~-~~-~~~f~~~~~~dd~---~~~l~~~~~~~r~li~~~~is~fdfr~YlFsrQ~~LL~~l~~~~e 314 (1247)
|||+++|++.+. .+ |+ +.|||+++.+||. +.++-++.++.|+.|+++.+++|+||.|+|+||+.||++++|++|
T Consensus 239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e 318 (1156)
T KOG1931|consen 239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE 318 (1156)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence 999999999995 44 23 7999999988885 678889999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcccCCCCCCCchhHHHHhhhhhHHHHHHHHHHHHHH
Q 000868 315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY 394 (1247)
Q Consensus 315 v~~r~~~fi~~~~~~l~~~e~~l~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~l~~ 394 (1247)
||+|+++|+.++.+.+..++.+++.+++.||+|.+|++++++|.. .+-..|+..+.+.++++++|.+|+.+|.++|.
T Consensus 319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~ 395 (1156)
T KOG1931|consen 319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL 395 (1156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999992 12234555556888999999999999999999
Q ss_pred hhcCCCCCcCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCccccccccCCCCCCCchHHHHHHHHhhh
Q 000868 395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA 474 (1247)
Q Consensus 395 ~~g~~~~~~~~p~~~~sl~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~l~~r~~l~~~~~~~~ 474 (1247)
+||..++- .|. -.+++++. . .
T Consensus 396 ~~~li~d~----------------~p~--------~~se~l~~--------------------------~---------~ 416 (1156)
T KOG1931|consen 396 LCGLIPDS----------------DPN--------YKSEQLKE--------------------------T---------F 416 (1156)
T ss_pred HhccCCCC----------------CCC--------ccccccce--------------------------E---------e
Confidence 99996651 110 01222210 0 0
Q ss_pred hcccCccccccCCCCCCccccCCCCcccccccccccCCCCCCCCCCCcchhhhhHhhhhhhhhccCCChHHHHHhhcCHH
Q 000868 475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE 554 (1247)
Q Consensus 475 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~AL~S~e 554 (1247)
.+..| .|+... +... . +.-.+.++++|+.+..
T Consensus 417 ~~~~~--------l~d~r~--------------------~~~k------------------e--~~S~~~k~~~~~~~~~ 448 (1156)
T KOG1931|consen 417 VLSTG--------LLDNRP--------------------TLTK------------------E--ALSLFNKLEEALQRIV 448 (1156)
T ss_pred eehhh--------hhhccc--------------------Ccch------------------h--hhhhHHHHHHHHHHHH
Confidence 01111 111100 0000 0 0114689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHh
Q 000868 555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1247)
Q Consensus 555 ~F~~~Y~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L 634 (1247)
+|.++|+++.+.++..|+++.|.|.|..++.|+|++|...+.+++|..++.++...+..++|....++++..++.|++.|
T Consensus 449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L 528 (1156)
T KOG1931|consen 449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL 528 (1156)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCc------------ccc-CCcceEeecCC--------
Q 000868 635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPV------------PLD-VSSLITFSGNP-------- 693 (1247)
Q Consensus 635 ~~~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~~~l~~~~------------~~~-l~~l~~~~~~~-------- 693 (1247)
+...+|.+++.-+.+. ..+.+..|..++.+++++..--..... .++ ++..++.....
T Consensus 529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~ 606 (1156)
T KOG1931|consen 529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG 606 (1156)
T ss_pred HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence 9999999998745443 225566788999998876641100000 000 00000000000
Q ss_pred -----CC-Ccc-----------ccC---CCCe---EEEEE------------------------EEeCCCCceE------
Q 000868 694 -----GP-PLE-----------LCD---GDPG---TLSVT------------------------VWSGFPDDIT------ 720 (1247)
Q Consensus 694 -----~~-~~~-----------~~~---~d~~---~L~V~------------------------l~s~lP~~I~------ 720 (1247)
+| ++. +|. .+.+ +..|. +.+.-|.+.+
T Consensus 607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~ 686 (1156)
T KOG1931|consen 607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL 686 (1156)
T ss_pred eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence 00 000 000 0000 11122 2221111111
Q ss_pred -----eeeEEEEEEec------cccCCCceEEeecCCeEeeCCceEEEEEcCCCcCeeEEEEEEEEEEcceEEEeccccC
Q 000868 721 -----VDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK 789 (1247)
Q Consensus 721 -----~d~v~l~L~~~------~~~~~~~~~l~s~~~~~L~PG~Nki~l~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~ 789 (1247)
-.+++++..++ ....++..-.-+..++.|.||.|.+++..++..+|.|...+++.++|.+.|+++.+.
T Consensus 687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~- 765 (1156)
T KOG1931|consen 687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF- 765 (1156)
T ss_pred ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence 11122211111 000111112236678999999999999999999999999999999999999964332
Q ss_pred CCCCCCCCcccccCCCCCeEEEEcCCCccceEEeecCccccccceEEEEEEEcCcccc-cceEEEEecCCCcccccccch
Q 000868 790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV 868 (1247)
Q Consensus 790 ~~~~~~~~~~~~e~~~~~~~~v~~~~~~~~L~a~~~~p~Li~~~q~V~l~i~sg~~~i-~~~~L~l~~~~gl~i~~~~~~ 868 (1247)
|+.+++.++++ |...+.+ ..+ .+.|+.|+|..++..|...| .++.|++.|.....+..+..+
T Consensus 766 --~~~k~d~~s~~----P~~~~~~---l~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T 828 (1156)
T KOG1931|consen 766 --PTKKNDQGSTE----PETKKER---LQC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT 828 (1156)
T ss_pred --CcccccccccC----Cccccch---HHH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence 67777777766 3333321 122 44457888888887777666 466666665444443333221
Q ss_pred hhhccccccccccccCccccccccccccccccccccceeecCCCCCcceeeEEEEEEEeeccccCCcccccCcccccccc
Q 000868 869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948 (1247)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lp~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~v~~ 948 (1247)
.+. ++.. .+ ++..++.. ...+.+.+.+++.+....-++|+++.-+ .+. .+|
T Consensus 829 ~~~-----ae~~-~~---------d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~s----------s~h 879 (1156)
T KOG1931|consen 829 TIF-----AEAA-RN---------DKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFS----------SDH 879 (1156)
T ss_pred ccc-----cccc-cc---------Cccchhhh-ccccceEEecchhcccccccccccCCcc---ccc----------ccc
Confidence 110 1110 00 01111111 2223344445554444445666664222 011 112
Q ss_pred ceEEEEEeeeccccccceeeEEEEEeeCCeeeeeeeeeccCCCceEEEEEEccccccceEEeeeeeeecCCccccccCCC
Q 000868 949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1247)
Q Consensus 949 ~~~~~l~~~~~~~~~~i~~~~isl~f~~PF~~~~~l~S~~~~~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~~~~~ 1028 (1247)
..+++.|+ |+|+++|+.|+.+|.+||++++++++.|+|+..++||+++++....+...+..+.+.+|+.+..+.+.
T Consensus 880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~ 955 (1156)
T KOG1931|consen 880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLL 955 (1156)
T ss_pred ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCC
Confidence 34445556 77888999999999999999999999999987799999999999999888999988776666666555
Q ss_pred CCCCCccceeecCCCeeEEEEEEEcCCCCCchhhhhcccceeEEE--EEeeccccccCCCCC--eeeeecCcccccccee
Q 000868 1029 RPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNI--QYGISGKRTIGAHPP--VTAEATGAEDAREGLI 1104 (1247)
Q Consensus 1029 ~p~~~~~~l~l~~~~~~s~~f~i~~~~~~~~~~~~~~~~~~~l~~--~y~~~~~~~~~~~~~--~~~~fdl~~~~~~~~l 1104 (1247)
++. +.+|... ..+.+|.+++.+..++. ++ ..+.... .+-...++.+....| |.+.|++ +.
T Consensus 956 ~t~-S~~p~~~----~~s~~~~~il~~~~ep~--~~--lh~~~s~~~~~~~d~d~~~~~~~~r~y~~~~ql-------v~ 1019 (1156)
T KOG1931|consen 956 NTK-SFFPNEC----IESVVFDKILICLNEPE--SI--LHSRGSAGASFVTDMDELERNLVPRTYTVPFQL-------VG 1019 (1156)
T ss_pred Ccc-ccccHHH----HHHHHHHHHHHHhcCCc--cc--ccccccccccccchHHhhhcccccccccceecc-------cC
Confidence 444 6666544 44455555454432310 00 1111111 222222322333334 4447754 44
Q ss_pred eeeeeeeccccccccceeeeccCCCCcceeCceEEEEEEEEeeccchhhhccc--CCceEEEEEeeCCCcEEEEeeeeee
Q 000868 1105 FRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQ--RNDEVLYEVNANADNWMIAGRKRGY 1182 (1247)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~i~~p~p~~~~rVG~~~~l~~~I~~~~~~~~~~~~~--~~~~l~yev~~~s~~WmvsG~k~g~ 1182 (1247)
|.+.+.|+ +.+.+|.|.++||||..|+|+|+|+++.++.+.+.+. ...++||||++++.+|||||||+|+
T Consensus 1020 ~~~~~dvq--------a~~~p~~~~~~~rv~~~~~mel~iTrl~el~~s~k~~e~qs~elmYEv~a~s~~Wli~Gr~~g~ 1091 (1156)
T KOG1931|consen 1020 FEPFFDVQ--------AEQMPTSHDELCRVGALIGMELSITRLVELLESDKQDEIQSGELMYEVLANSNNWLIAGRKRGV 1091 (1156)
T ss_pred ceeeeeee--------eeeccCcchhHHHHhhccCceEEEEeehhcccchhhhhcccceEEEEecCCCceEEEecCccce
Confidence 88888887 5566778999999999999999999998888754221 2678999999999999999999999
Q ss_pred EEeeCCCCceEEEEEEEEEccCCCCCCCcccccCcccCccCCCCCCCcEEEEeCCCCCCcccccC
Q 000868 1183 VSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA 1247 (1247)
Q Consensus 1183 vs~~~~~~~~~~~~~~liPL~aG~l~lP~l~l~~~~~~~~s~~~~~~~~i~V~P~~~~~~~~~~~ 1247 (1247)
|+|+.++ ++|++++.+|||+|||||+|+|+|++|.+++.+....+++.+.++|++.++|.|.+.
T Consensus 1092 Is~~~~q-~t~~i~v~~vPL~aGyl~lP~v~l~n~~~a~~s~k~d~~~~v~~lPpvlnss~~l~v 1155 (1156)
T KOG1931|consen 1092 ISMKRKQ-TTHQISVHVVPLKAGYLPLPRVRLTNYNDAGKSLKVDKHNLVEPLPPVLNSSPDLQV 1155 (1156)
T ss_pred eeeeccc-cceEEEEEEEEeccccccCceeeccccccccccccCCCCCcccCCcccccCCCCCcC
Confidence 9999876 899999999999999999999999999999999999999999999999999999763
No 2
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-40 Score=369.06 Aligned_cols=611 Identities=14% Similarity=0.015 Sum_probs=426.8
Q ss_pred HHHHHHHHHHHHHHhcC--CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhcc
Q 000868 559 KYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1247)
Q Consensus 559 ~Y~~Lt~~Ai~~yk~~~--R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~ 636 (1247)
.-+.+.+++..+|+.+. |+++ .+++.||..||+.++|.+|...++.++..|+.+||+.+...++..+..|++.+..
T Consensus 113 ~~Ia~Lk~~a~Q~~~Y~~P~~nS--~~~V~~Gq~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk 190 (809)
T KOG4386|consen 113 TEIAALKRNAPQNVPYPSPDANS--SSTVFFGQRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQK 190 (809)
T ss_pred hHHHHHhhcccccCCCCCCCcCc--cceeEecccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34567788889999976 8888 5599999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcc---------------------------ccCCcceEe
Q 000868 637 EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVP---------------------------LDVSSLITF 689 (1247)
Q Consensus 637 ~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~~~l~~~~~---------------------------~~l~~l~~~ 689 (1247)
-.+|......|+... ++....++.+.......+.+.+.+++.+ +-.+++..+
T Consensus 191 ~~~~~~~k~~mm~~~-t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~~ 269 (809)
T KOG4386|consen 191 YGCLRMKKKVMMEMN-TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVKG 269 (809)
T ss_pred hhhHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhhH
Confidence 999999988888764 3344445444444444444433222111 011333333
Q ss_pred ecCCC---CCccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEec-cccC----CC-----ceEEeecCCeEeeCCceEE
Q 000868 690 SGNPG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMAT-YNAD----EG-----AKALNTSTATVLKPGRNTI 756 (1247)
Q Consensus 690 ~~~~~---~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~-~~~~----~~-----~~~l~s~~~~~L~PG~Nki 756 (1247)
..++. +|.++. +++...+..+.-+.|..+.+.+..+.|++. |+.. +. .+-.-..+..++.||+..-
T Consensus 270 l~~~~~~~~P~~~~-~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~~l~~Et~~s~~~~qtv~Q~s~~~V~~e~~s 348 (809)
T KOG4386|consen 270 LLDVLDGKPPGSPF-PNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLETRVSFLDQQTVEQDSKVAVRVEIVS 348 (809)
T ss_pred HHHHhcCCCCCCCC-CChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHHHHHHHHHHHHHHHhhhccCceEEeeHHHHH
Confidence 32221 233332 233344566777888999998888888764 1110 00 0000133556667766432
Q ss_pred E---EEcCCCcCeeE-EEEEEEEEEcc----eEEEeccccC-CCCCCC------CCc----------cccc-CCCCCeEE
Q 000868 757 T---VDLPPQKPGSY-VLGALTGHIGR----LRFRSHSFSK-VGPADS------DDF----------MSYE-KPTRPILK 810 (1247)
Q Consensus 757 ~---l~~~~~~~G~y-~l~~l~i~ig~----l~F~s~~f~~-~~~~~~------~~~----------~~~e-~~~~~~~~ 810 (1247)
. +...+..+|.. .....-.-.|+ ..++ .|.. +|++.. .-+ ..++ +..+...+
T Consensus 349 ~i~q~i~~nd~~~~~~~~k~~~~A~~t~n~~~~li--~~~~~~G~v~~Sks~~~q~~~~~~~~n~~q~~~~tv~~~t~~l 426 (809)
T KOG4386|consen 349 KIEQVIRLNDVSVHLKAKKFPPDANQTANDADCLI--YDPIHLGSVEVSKSKPLQRVVLLDLKNAKQNWIVTVTKVTLDL 426 (809)
T ss_pred HHHHHHhhcchhheeeeecCCcccccCCCCCcEEE--ecCCCCcchhhhhhhhhhhHHHhhccccccceEEEeeehhhhh
Confidence 1 22334444432 22111111221 1221 1221 121100 000 0121 12222334
Q ss_pred EEcCCCccceEEeecCccccccceEEEEEEEcCcccc-cceEEEEecCCCcccccccchhhhccccccccccccCccccc
Q 000868 811 VFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDC 889 (1247)
Q Consensus 811 v~~~~~~~~L~a~~~~p~Li~~~q~V~l~i~sg~~~i-~~~~L~l~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1247)
....++++.+..-+-+|++-+|.+..-++|...+.++ -++++++++.+|-.-+.. +.+|...+ +...|
T Consensus 427 ~~a~~~NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT----~rn~~k~~-------~~~~~ 495 (809)
T KOG4386|consen 427 GNAIRGNIEFDENALNRNCHVENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLT----IRNTCKSS-------PIHGL 495 (809)
T ss_pred hhhccCcceeccccCCcccchheEEEEEEeeechhhhhhhhhhhcCccccccccee----eecccccC-------Cchhh
Confidence 4556678889999999999999999999999999998 588999888777654432 22333322 23445
Q ss_pred cccccccccccccccceeecCCCCCcceeeEEEEEEEeeccccCCcccccCccccccccceEEEEEeeeccccccceeeE
Q 000868 890 SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERT 969 (1247)
Q Consensus 890 ~~~~~~~~~~~~~~~~~I~lp~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~i~~~~ 969 (1247)
.++.+++. ..++.+++-+++......|+|+.+...+.|+.-+++-....++. -.+-|+ |++.. |
T Consensus 496 ~d~~~~~~-------k~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVee---keivck---chkde---T 559 (809)
T KOG4386|consen 496 LDFKRKEQ-------KHAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEE---KEIVCK---CHKDE---T 559 (809)
T ss_pred hhhhhHhh-------ccCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHH---hhHhhh---ccccc---e
Confidence 55556555 47888888888888888899998888877766333322222222 244477 88887 9
Q ss_pred EEEEeeCCeeeeeeeeec--------cCCCceEEEEEEccccccceEEeeeeeeecCCccccccCCCCCCCCccceeecC
Q 000868 970 IAVHFTDPFHVSTRIADK--------CSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISS 1041 (1247)
Q Consensus 970 isl~f~~PF~~~~~l~S~--------~~~~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~~~~~~p~~~~~~l~l~~ 1041 (1247)
++++...||++...|.++ ..|.+|.++.++.+.+||.++|.+++|++...+..+.+ -.|+..++.++.
T Consensus 560 vtietvfpfdvavkFvstkfehlervyadIpfllmtdLlsaspwAltIVsSelqlapsmttvdq----leSqvdnvilqt 635 (809)
T KOG4386|consen 560 VTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQ----LESQVDNVILQT 635 (809)
T ss_pred EEEEEEeeeeeeeeeehhhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhhhheeeec----ccccccchhhhc
Confidence 999999999999999985 45778999999999999999999999998763223332 356888899999
Q ss_pred CCeeEEEEEEEcCCCCCchhhhhcccceeEEEEEeeccccccCCCCCeeeeecCccccccceeeeeeeeeccccccccce
Q 000868 1042 SSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLA 1121 (1247)
Q Consensus 1042 ~~~~s~~f~i~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~fdl~~~~~~~~l~~~~~~l~~~~~~~~~~ 1121 (1247)
||.++.+||++|+..++. ..+...++|.++|.|++.- | ..++.++.++|++.+++.||+
T Consensus 636 gEsasecfclqcpslgni-------EggvatGhyiisWkRtsam------e--------NipiittVitLphviVe~iPl 694 (809)
T KOG4386|consen 636 GESASECFCLQCPSLGNI-------EGGVATGHYIISWKRTSAM------E--------NIPIITTVITLPHVIVEAIPL 694 (809)
T ss_pred ccceeeeeeEeccccccc-------cCCCccceEEEEEeecccc------c--------CCCceeeecccccceeeeccc
Confidence 999999999999986654 3577889999999888520 0 234577889999889999999
Q ss_pred eeeccCCCCcceeCceEEEEEEEEeeccchhhhcccCCceEEEEEeeCCCcEEEEeeeeeeEEeeCCCCceEEEEEEEEE
Q 000868 1122 IGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVP 1201 (1247)
Q Consensus 1122 ~i~~p~p~~~~rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~~s~~WmvsG~k~g~vs~~~~~~~~~~~~~~liP 1201 (1247)
+|...+|+++ ||+++++++|+++|.+++.+ ++--.+ .++|+|||||.|+-. |...+|+++++.|++||
T Consensus 695 hvnadlpsfg-rVReslpvkyhLqnktdlvq--------dveisv-epsDaFMFSGlkqir--lriLPGteqemlynfyp 762 (809)
T KOG4386|consen 695 HVNADLPSFG-RVRESLPVKYHLQNKTDLVQ--------DVEISV-EPSDAFMFSGLKQIR--LRILPGTEQEMLYNFYP 762 (809)
T ss_pred eeecCCCCcc-eecccccEEEEeccccceee--------eEEeec-ccchhheecccceEE--EEEcCCCceEEEEEEeh
Confidence 9999999977 89999999999999999885 553332 499999999999765 45566999999999999
Q ss_pred ccCCCCCCCcccccCcccCccC---CCCCCCcEEEEeCCCC
Q 000868 1202 LLAGYVRPPQLGLPGVEEANIS---CNPPGPHLICVLPPTL 1239 (1247)
Q Consensus 1202 L~aG~l~lP~l~l~~~~~~~~s---~~~~~~~~i~V~P~~~ 1239 (1247)
|+|||+.||+++|+..+-.|.. .-++.|+.|||+|+..
T Consensus 763 LmAGyqqlPslninllrfpnfTnQllrRfiPtsIFVkPqgr 803 (809)
T KOG4386|consen 763 LMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGR 803 (809)
T ss_pred hhchhhhCCcccccCccCCchHHHHHHhhcCceEEEccccc
Confidence 9999999999999777644433 4489999999999864
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.94 E-value=3.5e-23 Score=257.65 Aligned_cols=453 Identities=18% Similarity=0.206 Sum_probs=286.6
Q ss_pred ccCCCCeEEEEEEEeCCCCceEeeeEEEEEEecc-cc----CC-----------CceEEeecCCeEeeCCceE-EEEEcC
Q 000868 699 LCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATY-NA----DE-----------GAKALNTSTATVLKPGRNT-ITVDLP 761 (1247)
Q Consensus 699 ~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~-~~----~~-----------~~~~l~s~~~~~L~PG~Nk-i~l~~~ 761 (1247)
...+++..++|.|+|.+|.+|.+++++|.|++.. +. +. +........++.|.||..+ +.+...
T Consensus 23 ~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~ 102 (554)
T PF07919_consen 23 GKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFV 102 (554)
T ss_pred ccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEe
Confidence 4458889999999999999999999999998740 00 00 0011224457889999987 457777
Q ss_pred CCc---CeeEEEEEEEEEEcceEEE-eccccCC--CCCCC-------C--CcccccCC-CCCeEEEEcCCCccceEE-ee
Q 000868 762 PQK---PGSYVLGALTGHIGRLRFR-SHSFSKV--GPADS-------D--DFMSYEKP-TRPILKVFNPRPLVDLAA-AI 824 (1247)
Q Consensus 762 ~~~---~G~y~l~~l~i~ig~l~F~-s~~f~~~--~~~~~-------~--~~~~~e~~-~~~~~~v~~~~~~~~L~a-~~ 824 (1247)
... .|.+++.++.+.+|.-.|. ...|+.. ..... . ........ .++++.|.|++|++++.+ .+
T Consensus 103 ~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~I~~~~~ 182 (554)
T PF07919_consen 103 PREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVSIKLPNH 182 (554)
T ss_pred ccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEECCCCCeEEEeCCC
Confidence 667 9999999999999952222 1122111 00000 0 00011101 457899999999999999 99
Q ss_pred cCccccccceEEEEEEEcCcccccceEEEEecC-CCcccccccchhhhccccccccccccCccccccccccccccccccc
Q 000868 825 SSPLLINEAQWVGIIVQPIDYSLKGAILQIDTG-PGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLH 903 (1247)
Q Consensus 825 ~~p~Li~~~q~V~l~i~sg~~~i~~~~L~l~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1247)
.+|+++||.+.|.|+|.|+++....+++.+..- ++..-..... +....... . ...++-...
T Consensus 183 ~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~------------~~~~~~~~~ 244 (554)
T PF07919_consen 183 KPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEE-----TEDLSQVN-W------------DSDKDDEPL 244 (554)
T ss_pred CCCeEcCCEEEEEEEEEcCCCccceeEEEEEEeccccccccccc-----Cccceecc-c------------ccccccchh
Confidence 999999999999999999998886656655432 2221110000 00000000 0 000011112
Q ss_pred cceeecCCCCCcceeeEEEEEEEeeccccCCcccccCccccccccceEEEEEeeecc-ccc--cc-eeeEEEEEeeCCee
Q 000868 904 DGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGV-CHN--QI-FERTIAVHFTDPFH 979 (1247)
Q Consensus 904 ~~~I~lp~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~v~~~~~~~l~~~~~~-~~~--~i-~~~~isl~f~~PF~ 979 (1247)
...+++|.++++.+....+++++ ... .+.+..+.+.|.++. ... .+ +..++.+.+..||+
T Consensus 245 ~~~~~lg~l~~~~s~~~~l~i~~--~~~--------------~~~~L~i~~~Y~l~~~~~~~~~i~~~~~~~l~~~~PF~ 308 (554)
T PF07919_consen 245 FLGIPLGELAPGSSITVTLYIRT--SRP--------------GEYELSISVSYHLDVESDPETPISKTKTVQLPVINPFE 308 (554)
T ss_pred ccCcccccCCCCCcEEEEEEEEe--CCc--------------eeEEEEEEEEEEEecCCCCceeEEEeEEEeeeEEcCEE
Confidence 25789999999999888877773 211 222222333343200 111 11 34478899999996
Q ss_pred eee----eeee--------------------------------ccCCCceEEEEEEccccccceEEeeeeeeecCCcccc
Q 000868 980 VST----RIAD--------------------------------KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHT 1023 (1247)
Q Consensus 980 ~~~----~l~S--------------------------------~~~~~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~ 1023 (1247)
++. ++++ .+...+++|+..+.+.++|+|.|.+++++..+.....
T Consensus 309 ~~y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~ 388 (554)
T PF07919_consen 309 ANYDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGA 388 (554)
T ss_pred eeeeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCce
Confidence 554 4432 1223468999999999999999999999876532211
Q ss_pred --ccCCCCCCCCccceeecCCCeeEEEEEEEcCCCCCchhhhhcccceeEEEEEeeccccc-cCCCCCeeeeecCccccc
Q 000868 1024 --RQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRT-IGAHPPVTAEATGAEDAR 1100 (1247)
Q Consensus 1024 --~~~~~~p~~~~~~l~l~~~~~~s~~f~i~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~fdl~~~~~ 1100 (1247)
......-.....+..+.+++.....|++.....+... .........+.|.+.|.|. .....
T Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~g~~~I~WrR~~~~s~~------------- 452 (554)
T PF07919_consen 389 SCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSL---DDRRNVTLLGSLVIKWRRNSSNSSD------------- 452 (554)
T ss_pred eeeeccccccCCCccceeCcccccccccccccccccccc---ccCccceeEEEEEEEEEECCCCCCC-------------
Confidence 1111110012346788999999888884311100000 0012344445555555441 11111
Q ss_pred cceeeeeeeeeccccccccceeeeccCCCCcceeCceEEEEEEEEeeccchhhhcccCCceEEEEEeeCCCcEEEEeeee
Q 000868 1101 EGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKR 1180 (1247)
Q Consensus 1101 ~~~l~~~~~~l~~~~~~~~~~~i~~p~p~~~~rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~~s~~WmvsG~k~ 1180 (1247)
....+.+.+++..+..+|+.+.+-+|... ++|++++|.|.|+|.+... ++|...+ .+++.|||||.|+
T Consensus 453 --~~~~t~l~lP~~~v~~~~~~v~~~~p~~~-~~~~~~~l~~~I~N~T~~~--------~~~~~~m-e~s~~F~fsG~k~ 520 (554)
T PF07919_consen 453 --PVVTTPLPLPRVNVPSSPLRVLASVPPSA-IVGEPFTLSYTIENPTNHF--------QTFELSM-EPSDDFMFSGPKQ 520 (554)
T ss_pred --ceEEEEeecCceEccCCCcEEEEecCCcc-ccCcEEEEEEEEECCCCcc--------EEEEEEE-ccCCCEEEECCCc
Confidence 12345556665556666777777777765 6999999999999988877 4777764 5777799999999
Q ss_pred eeEEeeCCCCceEEEEEEEEEccCCCCCCCccccc
Q 000868 1181 GYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLP 1215 (1247)
Q Consensus 1181 g~vs~~~~~~~~~~~~~~liPL~aG~l~lP~l~l~ 1215 (1247)
..|+|.+ +++|++.|+++||.+|++.||++.|.
T Consensus 521 ~~~~llP--~s~~~~~y~l~pl~~G~~~lP~l~v~ 553 (554)
T PF07919_consen 521 TTFSLLP--FSRHTVRYNLLPLVAGWWILPRLKVR 553 (554)
T ss_pred CceEECC--CCcEEEEEEEEEccCCcEECCcEEEe
Confidence 9998866 99999999999999999999999884
No 4
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=99.71 E-value=3.5e-17 Score=168.14 Aligned_cols=104 Identities=34% Similarity=0.577 Sum_probs=86.6
Q ss_pred CcceeCceEEEEEEEEee--ccchhhh-cccCCceEEEEEeeCCCcEEEEeeeeeeEEeeCCCCceEEEEEEEEEccCCC
Q 000868 1130 DGLRVGQLVSMKWRVERL--KDFEENE-ASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGY 1206 (1247)
Q Consensus 1130 ~~~rVG~~~~l~~~I~~~--~~~~~~~-~~~~~~~l~yev~~~s~~WmvsG~k~g~vs~~~~~~~~~~~~~~liPL~aG~ 1206 (1247)
..||||++|+++++|++. |+....+ +.+...+++|||.+|+++|+|||||+|+|++. .++.+++.+.||||.+||
T Consensus 25 ~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~~~~WlV~Grrrg~f~~~--~~~~~~~~l~LIPL~~G~ 102 (147)
T PF12584_consen 25 PPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVADSDNWLVSGRRRGVFSLS--DGSEHEIPLTLIPLRAGY 102 (147)
T ss_pred cceEeCCeEEEEEEEEEcccCCccccccccCCCccEEEEEecCCCcEEEeccCcceEEec--CCCeEEEEEEEEecccce
Confidence 467999999999999995 5544321 13446899999999999999999999999984 499999999999999999
Q ss_pred CCCCcccccCcccCccC----------------CCCCCCcEEEEe
Q 000868 1207 VRPPQLGLPGVEEANIS----------------CNPPGPHLICVL 1235 (1247)
Q Consensus 1207 l~lP~l~l~~~~~~~~s----------------~~~~~~~~i~V~ 1235 (1247)
|+||+|+|+.+.+++.. ..+|+.++|+|+
T Consensus 103 L~lP~V~i~~~~~~~~~~~~~~~~~~~~~~~ev~~~n~~e~V~Vl 147 (147)
T PF12584_consen 103 LPLPKVEIRPYDPSNISKGDSMPRLEPFPPCEVDYRNAGETVLVL 147 (147)
T ss_pred ecCCEEEEEeccCCCcccccccccccCCCceeEEEcCCCEEEEeC
Confidence 99999999988843210 338999999986
No 5
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=99.40 E-value=1.1e-12 Score=146.73 Aligned_cols=99 Identities=34% Similarity=0.473 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHH
Q 000868 551 SSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC 630 (1247)
Q Consensus 551 ~S~e~F~~~Y~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C 630 (1247)
...-++...+++|+++|+++|++.++.|++..++.+||.+||+.|||++|+++|..++..|+.|||+.|...+|.++++|
T Consensus 148 e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 148 EKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHhc
Q 000868 631 QKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 631 ~k~L~~~~eYv~~~l~LLs 649 (1247)
++++++.++||.+|++|++
T Consensus 228 a~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999986
No 6
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=98.30 E-value=1.8e-06 Score=72.11 Aligned_cols=52 Identities=29% Similarity=0.593 Sum_probs=46.2
Q ss_pred ceEEEEEeeCCCcEEEEeeeeeeEEeeCCCCceEEEEEEEEEccCCCCCCCcccc
Q 000868 1160 DEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGL 1214 (1247)
Q Consensus 1160 ~~l~yev~~~s~~WmvsG~k~g~vs~~~~~~~~~~~~~~liPL~aG~l~lP~l~l 1214 (1247)
.++..+| ..+++|+|||.++-.+.|.+ +...++.++.+||++||+.||+|++
T Consensus 6 s~lli~V-~~n~~F~v~G~~~~~~~~~~--~~~~~i~~~Fipl~aG~~~LP~I~I 57 (57)
T PF12742_consen 6 SELLIEV-DKNDNFIVCGPKKMNFHMWP--GQKFEIPYNFIPLTAGFLKLPKINI 57 (57)
T ss_pred cceEEEE-cCCCceEEEccceeEEEEcc--CceEEEEEEEEEeehheecCccccC
Confidence 4565665 68999999999999888876 9999999999999999999999975
No 7
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.10 E-value=0.05 Score=61.26 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=76.3
Q ss_pred eeeEEEEEeeCCeeeeeeeeeccCC------CceEEEEEEccccccceEEeeeeeeecCCccccccC--CCCCCC-Cc--
Q 000868 966 FERTIAVHFTDPFHVSTRIADKCSD------GTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQG--DGRPTS-GF-- 1034 (1247)
Q Consensus 966 ~~~~isl~f~~PF~~~~~l~S~~~~------~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~~~--~~~p~~-~~-- 1034 (1247)
|-+-+...+..||.+.++++....+ ++.+|.++|+|++.-+|.|.+..|+..+++...... +..... ..
T Consensus 104 fRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~ 183 (249)
T PF06159_consen 104 FRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFG 183 (249)
T ss_pred EeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeecCCCceeEeccccccccccccccc
Confidence 3445667789999999999994332 278999999999999999999999987766532221 100000 11
Q ss_pred -----cceeecCCCeeEEEEEEEcCCCCCchhh--hhcccceeEEEEEeecc
Q 000868 1035 -----FPLVISSSSKAGILFSICLGKTTPEAEV--EAVRRDSLLNIQYGISG 1079 (1247)
Q Consensus 1035 -----~~l~l~~~~~~s~~f~i~~~~~~~~~~~--~~~~~~~~l~~~y~~~~ 1079 (1247)
....++|++...++|++.+......... +-...-+.|.|.|+..+
T Consensus 184 ~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~ 235 (249)
T PF06159_consen 184 GISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNM 235 (249)
T ss_pred ccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCC
Confidence 2356999999999999998875111000 01123477777776654
No 8
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=96.70 E-value=0.25 Score=67.70 Aligned_cols=281 Identities=20% Similarity=0.204 Sum_probs=170.8
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhh---------------CC-cchHHHHHHHH
Q 000868 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGN--YDQAAKSYEKVCALYSG---------------EG-WQDLLAEVLPN 626 (1247)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gd--y~~A~~~f~~~~~~Y~~---------------eg-W~~L~~~~L~~ 626 (1247)
..+.+.|...|-.|-...+..++|..+...-- .+....++..++..|+- .+ |..|-..+|..
T Consensus 449 ~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~ 528 (1185)
T PF08626_consen 449 SGLASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKE 528 (1185)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHH
Confidence 34457888888444444667777777754110 12233477777777764 12 99999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh----cCCCCCccc---------------cC----
Q 000868 627 LAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY----GEMKDPVPL---------------DV---- 683 (1247)
Q Consensus 627 ~a~C~k~L~~~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~----~~l~~~~~~---------------~l---- 683 (1247)
++.+.+.|++...-++.++.||......++..++..+.+++.+.+. ....-.++| |+
T Consensus 529 ~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i 608 (1185)
T PF08626_consen 529 CINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDI 608 (1185)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccch
Confidence 9999999999999999999888876566777887788888877661 110000011 10
Q ss_pred -----------------Ccce-EeecC--CC---CCccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEeccccCCCceE
Q 000868 684 -----------------SSLI-TFSGN--PG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKA 740 (1247)
Q Consensus 684 -----------------~~l~-~~~~~--~~---~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~ 740 (1247)
+.|+ .|... .. .......+|.+.+.|+|.|-|+-+|++++++|.-.+. ..
T Consensus 609 ~~~~~~~~~~~~~~~~~~pFYnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv------~f- 681 (1185)
T PF08626_consen 609 LPPHPRKSEASSQSINKGPFYNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGV------PF- 681 (1185)
T ss_pred hhhhhhhhhhcccCCCCCCcCChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCC------cc-
Confidence 0111 11110 00 1122345788999999999999999999998866432 11
Q ss_pred EeecCCeEe-eCCc-eEEEEEcCCCcCeeEEEEEEEEEEcceE--EEeccccCCC-----CCC---------CCCc---c
Q 000868 741 LNTSTATVL-KPGR-NTITVDLPPQKPGSYVLGALTGHIGRLR--FRSHSFSKVG-----PAD---------SDDF---M 799 (1247)
Q Consensus 741 l~s~~~~~L-~PG~-Nki~l~~~~~~~G~y~l~~l~i~ig~l~--F~s~~f~~~~-----~~~---------~~~~---~ 799 (1247)
--....+.| .|.. ..++|...+...|...+..+.++++++. +. ..+.... ... .+.. +
T Consensus 682 es~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l 760 (1185)
T PF08626_consen 682 ESYPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFF-PIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPL 760 (1185)
T ss_pred ccceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEccccccee-cccCcccchhhhhhcccccccccccccccccc
Confidence 111123445 6654 4577888899999999999999999852 11 1111100 000 0000 0
Q ss_pred ccc--CCCCCeEEEEcCCCccceEEeec---C---ccccccceEEEEEEEcCcccc-cceEEEEe
Q 000868 800 SYE--KPTRPILKVFNPRPLVDLAAAIS---S---PLLINEAQWVGIIVQPIDYSL-KGAILQID 855 (1247)
Q Consensus 800 ~~e--~~~~~~~~v~~~~~~~~L~a~~~---~---p~Li~~~q~V~l~i~sg~~~i-~~~~L~l~ 855 (1247)
..+ ....-.+.|+|+-| .|.+..+ . =.+-||.+.+.|+++|-+..- ....+++.
T Consensus 761 ~~~~~~~~~l~i~VIp~qP--~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~ 823 (1185)
T PF08626_consen 761 ESESPKTKSLSIKVIPPQP--LLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQ 823 (1185)
T ss_pred cccccccCcceEEEECCCC--eEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEE
Confidence 000 01123677888866 4444443 1 236688999999999998332 55555553
No 9
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.63 E-value=0.057 Score=62.00 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchh
Q 000868 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 561 ~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~-gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~e 639 (1247)
++..++|++.|...||.+.+-.+...+|.+|-.. |||++|+.+|..++..|..+|........+..++.++-++++-++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 4567899999999999999999999999999999 999999999999999999999888889999999999999887766
Q ss_pred HHHHHHHHh
Q 000868 640 YLLSCVRLL 648 (1247)
Q Consensus 640 Yv~~~l~LL 648 (1247)
=+...-++.
T Consensus 174 A~~~~e~~~ 182 (282)
T PF14938_consen 174 AIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 10
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.023 Score=60.44 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=116.8
Q ss_pred EEEEEeeCCeeeeeeeeecc-----CCCceEEEEEEccccccceEEeeeeeeecCCccccccCCCCCCCC--------cc
Q 000868 969 TIAVHFTDPFHVSTRIADKC-----SDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSG--------FF 1035 (1247)
Q Consensus 969 ~isl~f~~PF~~~~~l~S~~-----~~~k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~~~~~~p~~~--------~~ 1035 (1247)
-+...+..|.++.++||++- .++..||...++|.+..+.-+...+|+..- ++.....+-..+ ..
T Consensus 100 ffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~---~ynvt~i~~~~e~gdcvstfg~ 176 (348)
T KOG2625|consen 100 FFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSI---HYNVTEIAHEDEAGDCVSTFGS 176 (348)
T ss_pred hccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchh---eecceeecchhhcccccccccc
Confidence 34455788999999999953 233458999999999988667666665321 222111111101 12
Q ss_pred ceeecCCCeeEEEEEEEcCCCCCchhhhh--cccceeEEEEEeeccccccCCCCCeeeeecCccccccceeeeeeeeecc
Q 000868 1036 PLVISSSSKAGILFSICLGKTTPEAEVEA--VRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQR 1113 (1247)
Q Consensus 1036 ~l~l~~~~~~s~~f~i~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~~~~~~~~~~~~fdl~~~~~~~~l~~~~~~l~~ 1113 (1247)
..-++|...--++||+.++..-....+-+ ...-+.|-+.|+-..-+. +.+. +.. +.. -.+=| -.+.|
T Consensus 177 ~~~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgek-grlq--ts~--lqr---iapgy-gdvrl-- 245 (348)
T KOG2625|consen 177 GALLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEK-GRLQ--TSA--LQR---IAPGY-GDVRL-- 245 (348)
T ss_pred ccccCccchhhheeecCchHHHHHhhccccccceeeeeEEEeecccccc-ccch--HHH--HHh---hcCCC-CceEE--
Confidence 34466777778899998864211111100 012345555554433211 0110 000 000 00000 00111
Q ss_pred ccccccceeeeccCCCCcceeCceEEEEEEEEeeccchhhhcccCCceEEEEEeeCCCc--EEEE---eeeeeeEEeeCC
Q 000868 1114 PVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADN--WMIA---GRKRGYVSLPTK 1188 (1247)
Q Consensus 1114 ~~~~~~~~~i~~p~p~~~~rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~~s~~--Wmvs---G~k~g~vs~~~~ 1188 (1247)
.+|..| .+.-+-+|+.+..+|+|..... .+++.|. .++.+ -.+| ||.-| .+.
T Consensus 246 -sle~~p---------~~vdleepf~iscki~ncsera--------ldl~l~l-~~~nnrhi~~c~~sg~qlg--kl~-- 302 (348)
T KOG2625|consen 246 -SLEAIP---------ACVDLEEPFEISCKITNCSERA--------LDLQLEL-CNPNNRHIHFCGISGRQLG--KLH-- 302 (348)
T ss_pred -Eeeccc---------cccccCCCeEEEEEEcccchhh--------hhhhhhh-cCCCCceeEEecccccccc--CCC--
Confidence 122222 2235789999999999986654 4666664 44444 4445 55544 233
Q ss_pred CCceEEEEEEEEEccCCCCCCCccccc
Q 000868 1189 QGSRIVISILCVPLLAGYVRPPQLGLP 1215 (1247)
Q Consensus 1189 ~~~~~~~~~~liPL~aG~l~lP~l~l~ 1215 (1247)
+++...+.+++.|-+.|-+.+--++|+
T Consensus 303 ps~~l~~al~l~~~~~giqsisgirit 329 (348)
T KOG2625|consen 303 PSQHLCFALNLFPSTQGIQSISGIRIT 329 (348)
T ss_pred CcceeeeEEeeccchhcceeecceEee
Confidence 488999999999999999999999985
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.21 E-value=0.47 Score=42.87 Aligned_cols=65 Identities=29% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCC-cchHHHHHHHHHHHHHHHhccchh---HHHHHHH
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAG---YLLSCVR 646 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~C~k~L~~~~e---Yv~~~l~ 646 (1247)
.+...||..|+..|+|++|+.+|..++..+..-| .+.....++-.++.|+..+++-++ |..-+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999977666 444457888999999999888755 4444443
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.27 E-value=1 Score=51.35 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=61.8
Q ss_pred cchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 000868 577 KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1247)
Q Consensus 577 ~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~ 652 (1247)
...+.....-+|..||..|+|++|+..|..++..|-.+.|. ...|...+.|+..+++.+.-..+.-+++..+.
T Consensus 176 s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 176 STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33444678999999999999999999999999999999998 56677778899999999888888877776554
No 13
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=58 Score=42.80 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcC-----CCCCccc---------
Q 000868 616 WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGE-----MKDPVPL--------- 681 (1247)
Q Consensus 616 W~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~~~-----l~~~~~~--------- 681 (1247)
|..|--.+|........+.++-+.-++.+..||..+--.++..+...+++++.+.+... .-+|..+
T Consensus 557 w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~ts~~~~i~~~d~~iild~ 636 (1235)
T KOG1953|consen 557 WSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSATSYWDPIHINDPVIILDP 636 (1235)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhcccccccccceEecCccEecCc
Confidence 88888888777666666677666555555445554434456666778888887655321 0111110
Q ss_pred ------cC------------------------Ccce--Ee--ecCCC-CCccccCCCCeEEEEEEEeCCCCceEeeeEEE
Q 000868 682 ------DV------------------------SSLI--TF--SGNPG-PPLELCDGDPGTLSVTVWSGFPDDITVDTLSL 726 (1247)
Q Consensus 682 ------~l------------------------~~l~--~~--~~~~~-~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l 726 (1247)
|+ +.|+ .| ..... +......+++..+.|+++|-+.-+++++.+.+
T Consensus 637 ~~lt~fPliss~~vlel~~Nrart~~pn~~e~spFiytpfsk~~dN~~~~LvwVvdepvef~v~v~Np~~fdl~V~Di~L 716 (1235)
T KOG1953|consen 637 FMLTDFPLISSSEVLELIHNRARTGLPNSIEKSPFIYTPFSKRQDNNQSKLVWVVDEPVEFSVYVRNPLSFDLEVQDIHL 716 (1235)
T ss_pred ccccccccccChhHHHHHhcccccCCCcccccCceEeccccccccCccceEEEEeCCceEEEEEEcCccceeEEEeeEEE
Confidence 00 1110 01 11100 12223447889999999999999999999888
Q ss_pred EEEeccccCCCceEEeecCCeEeeCCc--eEEEEEcCCCcCeeEEEEEEEEEE
Q 000868 727 TLMATYNADEGAKALNTSTATVLKPGR--NTITVDLPPQKPGSYVLGALTGHI 777 (1247)
Q Consensus 727 ~L~~~~~~~~~~~~l~s~~~~~L~PG~--Nki~l~~~~~~~G~y~l~~l~i~i 777 (1247)
.-.+. +-+.. .-...+.|.. -++++...+...|-..+.-.++..
T Consensus 717 ~~egv----nF~~~---~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~c 762 (1235)
T KOG1953|consen 717 ETEGV----NFKCS---HVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKC 762 (1235)
T ss_pred Eeccc----cceee---eeeeecCcccccceEEEeccccccCceeeeeEEEEE
Confidence 76543 21111 1123334432 467888888888875444444443
No 14
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.33 E-value=2.6 Score=42.18 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=56.6
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
.+.+++|--+.+.|+|++|+..|+.....|.+..|+. .+-..++-|+..+++.++=+..++..|+
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~---~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA---ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998888874 4445567799999999999999988885
No 15
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=1.5 Score=48.09 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhCCcchHHHH
Q 000868 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAE 622 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~-gdy~~A~~~f~~~~~~Y~~egW~~L~~~ 622 (1247)
+-+++||+.|++.||.|+|..-+.+||+.|=.- -|+++|+.+|....++|..+--..+...
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 457899999999999999999999999998754 8999999999999999999988876654
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.65 E-value=1.3 Score=39.98 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCc-chhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 000868 562 ELTKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~R~-Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~ 612 (1247)
+..++|+..+...|.. .....+...||..|+.+|+|++|+.+|+.++..+.
T Consensus 26 ~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 26 DYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4556666776667743 23456799999999999999999999999998764
No 17
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.90 E-value=1.4 Score=33.93 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 000868 585 GEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1247)
Q Consensus 585 ~dLA~l~y~~gdy~~A~~~f~~~~~~Y~ 612 (1247)
..||.+|.++|+|++|+.+|..++..-.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999776543
No 18
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=85.61 E-value=7.4 Score=44.67 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCc-chHHHHHHHHHHHHHHHhccchhH
Q 000868 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-QDLLAEVLPNLAECQKILNDEAGY 640 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW-~~L~~~~L~~~a~C~k~L~~~~eY 640 (1247)
++..+|++.|..-++.+.+..+...+|.++.+.|+|++|..+|..+...+.+.+= ..=....+....=|+-.+++...-
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 4567888999999999999999999999999999999999999999998876552 111223333333355455543322
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Q 000868 641 LLSCVRLLSLDKGLFSTKERQAFQSEVISLAYG 673 (1247)
Q Consensus 641 v~~~l~LLs~~~~~~s~~~r~~~~~ell~~~~~ 673 (1247)
-+..=+....+.+-.+.++ -.+..+|++....
T Consensus 216 ~~~~~~~~~~~~~F~~s~E-~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSRE-YKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHh
Confidence 2222222222222222233 2478888877663
No 19
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.21 E-value=2.7 Score=36.36 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 586 dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
++|..++.+|+|++|...|..++..+-. -...+..++.|+..+++.++=+...-+++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999988744 355667788898888888766655544443
No 20
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.97 E-value=6 Score=37.90 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=52.4
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~ 651 (1247)
.....+|..++..|+|+.|..+|..++..|....+. ...+..++.|+.++++.++-+...-+++...
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 456779999999999999999999999988655443 2346677888889999887777766666544
No 21
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.57 E-value=0.9 Score=39.67 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh-CCcchH
Q 000868 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDL 619 (1247)
Q Consensus 564 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~-egW~~L 619 (1247)
.+.|++.|+++- +...-..+...||..|++.|+|++|..+|..+.....+ ..|..+
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345666666652 33334456778999999999999999999999988777 344433
No 22
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.05 E-value=1.9 Score=31.76 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~ 613 (1247)
...+|..|+..|++++|..+|..+...|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 567999999999999999999999988754
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.87 E-value=3.1 Score=36.36 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=43.8
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN-DEAGYLLSCVRL 647 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~-~~~eYv~~~l~L 647 (1247)
.-..+|..+++.|+|++|+.+|..++..-..+ ..++-..+.|+.+++ +.++-+..+.+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 35688999999999999999999999975332 336667788888888 455544444333
No 24
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=81.28 E-value=0.37 Score=62.00 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=124.4
Q ss_pred ChHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC--CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchH
Q 000868 542 SNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL 619 (1247)
Q Consensus 542 ~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~yk~~~--R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L 619 (1247)
+.+.|+........+.+..-.+++.|.+.|+++. +.|-...+..-+...|++=..|..|..+...-+..|-..+|..+
T Consensus 408 ~se~l~~~~~~~~~l~d~r~~~~ke~~S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~ 487 (1156)
T KOG1931|consen 408 KSEQLKETFVLSTGLLDNRPTLTKEALSLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSI 487 (1156)
T ss_pred cccccceEeeehhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhh
Confidence 3455555555555666666677777777777764 55555566777777888888899999999999999999999876
Q ss_pred HH---HHHHHHHHHHHH--hccchhHHHHHHHHhccCCCCCC----HHHHHHHHHHHHHHHhcCCCCCccccCCcceEee
Q 000868 620 LA---EVLPNLAECQKI--LNDEAGYLLSCVRLLSLDKGLFS----TKERQAFQSEVISLAYGEMKDPVPLDVSSLITFS 690 (1247)
Q Consensus 620 ~~---~~L~~~a~C~k~--L~~~~eYv~~~l~LLs~~~~~~s----~~~r~~~~~ell~~~~~~l~~~~~~~l~~l~~~~ 690 (1247)
.- .--..+..|.+. ++.+...+.-.+..+++.-..+. ......++....++.. .........+-+++.+.
T Consensus 488 ~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~~L~~-~~r~h~~~k~l~~~~~~ 566 (1156)
T KOG1931|consen 488 LKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFHDLQE-LNRKHLMYKLLGLFEVF 566 (1156)
T ss_pred hcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHH-HHHHHHHHHHHhHHHhh
Confidence 64 122233445442 34443333333333332100000 0000011111111111 00111122233333333
Q ss_pred cCCCCCccccCCCCeEEEEEEEeC-CCCceEeeeEEEEEEeccccCCCceEEeecCCeEee-CCceEEEEEcCCCcCeeE
Q 000868 691 GNPGPPLELCDGDPGTLSVTVWSG-FPDDITVDTLSLTLMATYNADEGAKALNTSTATVLK-PGRNTITVDLPPQKPGSY 768 (1247)
Q Consensus 691 ~~~~~~~~~~~~d~~~L~V~l~s~-lP~~I~~d~v~l~L~~~~~~~~~~~~l~s~~~~~L~-PG~Nki~l~~~~~~~G~y 768 (1247)
.+. +.+......-...+.+.++ .|.++++-.+++... ++....+..-+..++ -+.|+..+.|+.+..|.|
T Consensus 567 ~~s--~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~------~~~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~ 638 (1156)
T KOG1931|consen 567 LNS--KVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCM------DGDVISQGPVDFLYKSIVVNKLILECRDIMYGEA 638 (1156)
T ss_pred hcc--hhhhhcccchhhhhhhhhccccceeEEeeccceee------cceeeeccchHhhHhhhhhhhHHHHHHhhccchh
Confidence 221 2223222222333444434 666776666655443 222222222222222 456888899999999999
Q ss_pred EEEEEEEEEcceEEE
Q 000868 769 VLGALTGHIGRLRFR 783 (1247)
Q Consensus 769 ~l~~l~i~ig~l~F~ 783 (1247)
.+.+.++.+.++.|.
T Consensus 639 ~l~s~~v~l~gi~~~ 653 (1156)
T KOG1931|consen 639 ELLSFEVILEGITFV 653 (1156)
T ss_pred hheeeeeEeeccccc
Confidence 999999999998876
No 25
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.24 E-value=2.2 Score=39.24 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=39.5
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~ 644 (1247)
....||..||+.|+|++|..++.. .. ..... .....++++|+.+|++.++=++..
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LK-LDPSN-----PDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCH-----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344599999999999999999988 22 22222 344446699999999988766653
No 26
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.15 E-value=9.1 Score=43.34 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=63.8
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCCC
Q 000868 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKG 653 (1247)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~~ 653 (1247)
..-.+-..+.=|++.+|.+|||..|+.+|-.+...|..+-|. -.+|..++.|+..|+..++==.+.-++...+.+
T Consensus 173 ~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 173 NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 444445668889999999999999999999999999999998 688999999999999998776666667766654
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=80.40 E-value=6.7 Score=34.30 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~ 642 (1247)
.+...+|..+++.|++++|..+|..++....... .++..++.|+..+++.++-..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHHHHHHHHhHHHHHH
Confidence 4577788888888888888888888887665554 334455556655555444333
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=80.15 E-value=11 Score=43.51 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHH
Q 000868 552 SVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQ 631 (1247)
Q Consensus 552 S~e~F~~~Y~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~ 631 (1247)
-+++|.+ =.++.++|+.--++|- +.++.||.++...|+|++|+.-+..+..- + ....+.++.++.+|+
T Consensus 192 ~~~~~d~-A~~~l~kAlqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----n-~~yl~evl~~L~~~Y 259 (389)
T COG2956 192 ASSDVDR-ARELLKKALQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQ----N-PEYLSEVLEMLYECY 259 (389)
T ss_pred hhhhHHH-HHHHHHHHHhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHh----C-hHHHHHHHHHHHHHH
Confidence 3444444 2334555555444443 56888999999999999999999999852 1 223468999999999
Q ss_pred HHhccchhHHHHHHHHh
Q 000868 632 KILNDEAGYLLSCVRLL 648 (1247)
Q Consensus 632 k~L~~~~eYv~~~l~LL 648 (1247)
.++|+.++++....+..
T Consensus 260 ~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 260 AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 99999977665554444
No 29
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.85 E-value=3 Score=30.95 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~ 612 (1247)
-..||..|++.|+|++|...|..++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46799999999999999999999987654
No 30
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.11 E-value=3.7 Score=31.83 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~ 613 (1247)
....||..|+.+|+|++|..++..++..+..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4678999999999999999999999987653
No 31
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.28 E-value=5.7 Score=29.68 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.5
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y 611 (1247)
+-..+|..|+.+|+|++|+..|..++...
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 35679999999999999999999998753
No 32
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.57 E-value=19 Score=34.18 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHH
Q 000868 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 632 (1247)
Q Consensus 581 ~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k 632 (1247)
......+|.+++..|++++|+..+..++.--++.+...-....|.-++++.+
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 3447789999999999999999999999999999999888887777776654
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=70.82 E-value=12 Score=32.64 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=41.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LL 648 (1247)
...+|..++..|+|++|..+|..++..+.... ..+..++.|+...++.++-+..+-+.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998776553 344456667666666655444443333
No 34
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=70.04 E-value=18 Score=42.22 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=36.9
Q ss_pred eeeEEeeC-------CCCceEEEEEEEEEccCCCCCCCcccccCcccCccCCCCCCC
Q 000868 1180 RGYVSLPT-------KQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGP 1229 (1247)
Q Consensus 1180 ~g~vs~~~-------~~~~~~~~~~~liPL~aG~l~lP~l~l~~~~~~~~s~~~~~~ 1229 (1247)
.|.+-++. .+++.+++.+.+|||.+|++.|+.|+|........-..+.++
T Consensus 246 ~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~l~ 302 (306)
T PF12735_consen 246 TGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGDLP 302 (306)
T ss_pred CceEEecccccccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCCCc
Confidence 46665533 689999999999999999999999999666533333333333
No 35
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.78 E-value=9.5 Score=28.34 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.0
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~ 612 (1247)
+-..+|.+|..+|++++|..+|..+...-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356799999999999999999999987643
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=68.65 E-value=13 Score=32.01 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 000868 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1247)
Q Consensus 564 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y 611 (1247)
.+.|++.|..+= +..........+|..++++|+|++|..+|..++..+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456777777753 334455778999999999999999999999988654
No 37
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.27 E-value=3.3e+02 Score=33.44 Aligned_cols=135 Identities=20% Similarity=0.236 Sum_probs=69.9
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEeccccCCCceEEe-----ecCCeEeeCCceE-EEEE---cCCCcCeeEEEE
Q 000868 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN-----TSTATVLKPGRNT-ITVD---LPPQKPGSYVLG 771 (1247)
Q Consensus 701 ~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~-----s~~~~~L~PG~Nk-i~l~---~~~~~~G~y~l~ 771 (1247)
.++...+.|.|.|.--.+ ++..|.+.+- +++-..-| .-..+.|+||..+ ++++ ..+..+|.|.+.
T Consensus 282 ~~~t~sf~V~IeN~g~~~---d~y~Le~~g~---pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 282 PSTTASFTVSIENRGKQD---DEYALELSGL---PEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred cCCceEEEEEEccCCCCC---ceeEEEeccC---CCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 355667788888774332 5666666531 12222222 2245778999866 5555 445789999753
Q ss_pred EEEEEEcc--eEEEeccccCCCCCCCCCcccccCCCCCeEEEEcCCCccceEEeecCccccccceEEEEEEEcCcccc-c
Q 000868 772 ALTGHIGR--LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-K 848 (1247)
Q Consensus 772 ~l~i~ig~--l~F~s~~f~~~~~~~~~~~~~~e~~~~~~~~v~~~~~~~~L~a~~~~p~Li~~~q~V~l~i~sg~~~i-~ 848 (1247)
-. +.-++ ..+..-.-...+. +... +.+...+-.+++.+ |+++.+.+.|.|-+++- +
T Consensus 356 I~-A~s~s~v~~e~~lki~~~g~------~~~~------v~l~~g~~~lt~ta--------Gee~~i~i~I~NsGna~Lt 414 (513)
T COG1470 356 IT-ASSSSGVTRELPLKIKNTGS------YNEL------VKLDNGPYRLTITA--------GEEKTIRISIENSGNAPLT 414 (513)
T ss_pred EE-EeccccceeeeeEEEEeccc------ccee------EEccCCcEEEEecC--------CccceEEEEEEecCCCccc
Confidence 22 22221 1111000000011 1010 11111100233444 48999999998877665 9
Q ss_pred ceEEEEecCCCccc
Q 000868 849 GAILQIDTGPGLTI 862 (1247)
Q Consensus 849 ~~~L~l~~~~gl~i 862 (1247)
|.+|++....|..+
T Consensus 415 dIkl~v~~PqgWei 428 (513)
T COG1470 415 DIKLTVNGPQGWEI 428 (513)
T ss_pred eeeEEecCCccceE
Confidence 99999877666544
No 38
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=64.39 E-value=17 Score=32.02 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 000868 587 IAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1247)
Q Consensus 587 LA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~ 650 (1247)
|+..|++.++|++|...++.++.....+ ...+..++.|+.++++..+=+..+-+.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4678999999999999999999986663 334455788999999887766666655543
No 39
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=63.85 E-value=10 Score=41.24 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccch
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 638 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~ 638 (1247)
-..+|.+|+++|.|..|+..|..++..|-+..|. -..|..+++++.+|+..+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---EEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhCChH
Confidence 4568999999999999999999999999999997 457778888999888764
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=63.55 E-value=51 Score=43.31 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhh-----hCCcchHHHHHHHHHHHHHHHhc
Q 000868 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS-----GEGWQDLLAEVLPNLAECQKILN 635 (1247)
Q Consensus 561 ~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~-----~egW~~L~~~~L~~~a~C~k~L~ 635 (1247)
+....+|+..+...++. .---+.-.+|.+||+.|++++|...|.++..... ++| ..+...+.=.+++|+++|.
T Consensus 433 L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-KSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-ccchhHHHHHHHHHHHhhh
Confidence 55667777777777766 4334577899999999999999999999998744 344 3344555666777877764
Q ss_pred cc
Q 000868 636 DE 637 (1247)
Q Consensus 636 ~~ 637 (1247)
+.
T Consensus 511 ~~ 512 (1018)
T KOG2002|consen 511 DT 512 (1018)
T ss_pred hh
Confidence 43
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=61.68 E-value=52 Score=32.51 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LL 648 (1247)
.+...+|..++..|+|+.|..+|..+..... +.| .....++.|+..+++.++=+...-+.+
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDP-----RPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999999887642 222 333456778888887765444433333
No 42
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.88 E-value=11 Score=25.81 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~ 610 (1247)
...+|..+++.|+|++|...|..++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 467899999999999999999988764
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=59.65 E-value=25 Score=38.57 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 000868 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVR 646 (1247)
Q Consensus 585 ~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~ 646 (1247)
..+|.+|+++|+|++|...|..+...|....|. ...+...+.++.++++.++.+.+.-.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 478899999999999999999999999887554 45566778888899999888875443
No 44
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=58.72 E-value=1.1e+02 Score=33.29 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=40.1
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHh
Q 000868 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1247)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L 634 (1247)
..+.+......+|..||..|||.+|...|+..+..|-.+.... ..+-+.+.|..++
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---YALYMLGLSYYKQ 92 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---hHHHHHHHHHHHh
Confidence 3556667788999999999999999999999999999988653 3333344455443
No 45
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=57.29 E-value=18 Score=31.76 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y 611 (1247)
.+..+.|.+|++.|+|++|...|..++..-
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567889999999999999999999998643
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=56.97 E-value=95 Score=38.84 Aligned_cols=105 Identities=20% Similarity=0.146 Sum_probs=75.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHhc-C-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhh--hCCcchH
Q 000868 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS--GEGWQDL 619 (1247)
Q Consensus 544 ~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~yk~~-~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~--~egW~~L 619 (1247)
..|-.++-+...|.... .+++.|++.|++- + ....+-....++|..+.+.++|+.|..|+.+..+-|. -+-=+..
T Consensus 287 ~nLa~ly~~~GKf~EA~-~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAE-EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHHH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 44444555555555543 5788888888882 2 3444445688999999999999999999999999887 2223335
Q ss_pred HHHHHHHHHHHHHHhccch---hHHHHHHHHhc
Q 000868 620 LAEVLPNLAECQKILNDEA---GYLLSCVRLLS 649 (1247)
Q Consensus 620 ~~~~L~~~a~C~k~L~~~~---eYv~~~l~LLs 649 (1247)
...+-..+++|++++|+.. ++.+.++.++.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 6778889999999999884 45565665553
No 47
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=55.98 E-value=5.1e+02 Score=32.58 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=44.7
Q ss_pred ceEEEEEEccccccceEEeeeeeeecCCccccc--cC------------CCCCCCCccceeecCCCeeEEEEEEEcCC
Q 000868 992 TLLLQVILHSQVNASLTIYDAWLDLQDGFVHTR--QG------------DGRPTSGFFPLVISSSSKAGILFSICLGK 1055 (1247)
Q Consensus 992 k~~lqV~v~~~s~~~l~i~~~~L~~~~~~~~~~--~~------------~~~p~~~~~~l~l~~~~~~s~~f~i~~~~ 1055 (1247)
+..+|+.+++..+.+|++.+..+...++..... .. .+.+.....++.+.+|+.-.+-|.+.++.
T Consensus 28 ~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~~~~ 105 (554)
T PF07919_consen 28 PVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFVPRE 105 (554)
T ss_pred eEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEeccc
Confidence 788999999999999999999998765311111 11 11123356678999999877777776655
No 48
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=55.40 E-value=20 Score=31.00 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 000868 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1247)
Q Consensus 592 y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~ 650 (1247)
+..|+|++|+.+|..++..+..+ ..+...+++|+.+.|+.++-..++-+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999988774 344556899999999999888877666643
No 49
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=55.33 E-value=31 Score=42.09 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccc
Q 000868 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1247)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~ 637 (1247)
+.-+....+.-||.++|-.|||+.|+++|+.+-.+|..++=+.-....++|.+-|+-..+..
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~ 264 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQS 264 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCC
Confidence 45566677888999999999999999999999999997774444456889999999876643
No 50
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=54.69 E-value=21 Score=31.07 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 000868 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHG-NYDQAAKSYEKVCAL 610 (1247)
Q Consensus 564 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~g-dy~~A~~~f~~~~~~ 610 (1247)
.++|+..|..+= ....-..+...||..|+.+| +|.+|...|..++..
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 455556665542 22333457899999999999 799999999988753
No 51
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.37 E-value=75 Score=32.35 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=50.2
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 000868 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1247)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~ 644 (1247)
...-+......+|..++..|+|++|...|..+.....+..+.. .....+++|+...++.++=+..+
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~---~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKP---LARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 4446667788899999999999999999999999775565543 34556788887777776655543
No 52
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.32 E-value=22 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCC
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~eg 615 (1247)
-..+|..|.++|++++|...|..++...-++-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46789999999999999999999999876653
No 53
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.31 E-value=53 Score=32.47 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhhCC--cch--HHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 000868 587 IAAVCFKHGNYDQAAKSYEKVCALYSGEG--WQD--LLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1247)
Q Consensus 587 LA~l~y~~gdy~~A~~~f~~~~~~Y~~eg--W~~--L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~ 651 (1247)
.|.-+|++||+-+|+.+..++....+++. |-. +.|.|...++.=...-.-+-.|+..+++-.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a 70 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA 70 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH
Confidence 57889999999999999999999999888 622 225666555543332233356888777766544
No 54
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=52.91 E-value=89 Score=37.26 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=52.1
Q ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 000868 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1247)
Q Consensus 565 ~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~ 643 (1247)
+.|++.|..+= ..-....+...+|..|+++|+|+.|+..+..++....... ..+..++.|+..+++.++-+..
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~------~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA------KAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHhCCHHHHHHH
Confidence 34555555542 1111224578999999999999999999999998765432 2344556777788887665555
Q ss_pred HHHHhc
Q 000868 644 CVRLLS 649 (1247)
Q Consensus 644 ~l~LLs 649 (1247)
+-+.+.
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 544443
No 55
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.07 E-value=53 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.0
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCC
Q 000868 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1247)
Q Consensus 581 ~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~eg 615 (1247)
..++.=+|+|+++.|+|++|..+|..+......+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 35788999999999999999999999999888777
No 56
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=51.25 E-value=45 Score=37.58 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=65.9
Q ss_pred HHHHhhcCHHHHHHHHHH--HHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHH
Q 000868 545 NLLKSLSSVEEFEQKYLE--LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAE 622 (1247)
Q Consensus 545 ~L~~AL~S~e~F~~~Y~~--Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~ 622 (1247)
..+.|+.+=+.|-+.|=+ ....|-.....+ |.+-|.+ -..+|.+|+++|+|..|+.=|..++..|.+.... -.
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l-~~~la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~---~e 213 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTTDATKRLVFL-KDRLAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT---RD 213 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH---HH
Confidence 345555555555554432 233332211222 2233322 4489999999999999999999999999999986 57
Q ss_pred HHHHHHHHHHHhccchhHHHHHH
Q 000868 623 VLPNLAECQKILNDEAGYLLSCV 645 (1247)
Q Consensus 623 ~L~~~a~C~k~L~~~~eYv~~~l 645 (1247)
.|..+.+.+.+||..+++-.+.-
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 88888889999999988877654
No 57
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=50.89 E-value=60 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
-.++|..++..|+|++|..+|..+...+...... ...+..++.|+.+.++.++=+..+-+++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678999999999999999999999877654332 34555677888887777655555444443
No 58
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.59 E-value=28 Score=37.28 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 000868 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1247)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~ 613 (1247)
+.-+..|+.-.-.-+++....++|.+|++.||+++|+..|..+..+...
T Consensus 20 e~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 20 EAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 3444556654445566677999999999999999999999997776443
No 59
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.07 E-value=30 Score=27.06 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 000868 586 EIAAVCFKHGNYDQAAKSYE 605 (1247)
Q Consensus 586 dLA~l~y~~gdy~~A~~~f~ 605 (1247)
-+|...|++|+|++|..+|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46899999999999999976
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=47.98 E-value=1.5e+02 Score=31.15 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCC-c-ch--hHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccc
Q 000868 564 TKGAANNYHCSWW-K-RH--GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1247)
Q Consensus 564 t~~Ai~~yk~~~R-~-Rs--a~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~ 637 (1247)
.+.|+..|.++-+ . .. ...+...+|..|++.|+|++|..+|..++...... ...+..++.|+..+++.
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCh
Confidence 3466666665521 0 11 12456777777777777777777777777754432 12233445555555543
No 61
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=45.58 E-value=34 Score=38.52 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=41.8
Q ss_pred chhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhc
Q 000868 578 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 635 (1247)
Q Consensus 578 Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~ 635 (1247)
..+......||..||+.|||++|...|++.+..|.++-=. -..+-+.+-|...++
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLTNMALD 120 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHhhhhcc
Confidence 4555667899999999999999999999999999988633 334444455654443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=45.06 E-value=94 Score=38.89 Aligned_cols=87 Identities=18% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcC-CcchhH-HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHH-HHHHHHHHHHHHHhccch
Q 000868 562 ELTKGAANNYHCSW-WKRHGV-VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLL-AEVLPNLAECQKILNDEA 638 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~-R~Rsa~-~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~-~~~L~~~a~C~k~L~~~~ 638 (1247)
++.++|+......+ +.+.-. ..-.+||..|++.+.|+.|..+|..+..-+..-|=.... ...+..++.-+..+|+.+
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 47777777776664 444443 448899999999999999999999887766555543322 456677888888999999
Q ss_pred hHHHHHHHHh
Q 000868 639 GYLLSCVRLL 648 (1247)
Q Consensus 639 eYv~~~l~LL 648 (1247)
++++..-.++
T Consensus 468 ~a~~~~~~~~ 477 (508)
T KOG1840|consen 468 AAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHH
Confidence 9988876655
No 63
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.72 E-value=83 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhhCCcch---HHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 590 VCFKHGNYDQAAKSYEKVCALYSGEGWQD---LLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 590 l~y~~gdy~~A~~~f~~~~~~Y~~egW~~---L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
...+.|||..|...+.+...+...++|.. -....+...+..+..+|..++=+...-+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999976 3344455577788888888776666555443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=44.15 E-value=1e+02 Score=32.56 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=13.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCA 609 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~ 609 (1247)
...+|..++..|+|++|..+|..+..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 34445555555555555555555543
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=43.45 E-value=95 Score=32.71 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchh
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~e 639 (1247)
.....+|.+|+..|+|++|..+|..++....... ..+..++.|+...++.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcccHHH
Confidence 4566799999999999999999999998765543 233344455555544433
No 66
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=1.6e+02 Score=33.20 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhH
Q 000868 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1247)
Q Consensus 561 ~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eY 640 (1247)
..|.++|...|..+|+--.|.. ..+=|.=-..-.+++.|+.+|++.+.-+.+++-..++..++ -.|.+-|-+.+.|
T Consensus 91 vdl~eKAs~lY~E~GspdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---GKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---HHhhhHhhhhHHh
Confidence 4577899999999998777653 34445555788899999999999999999999887776654 4566666666666
Q ss_pred HHHHHHHh
Q 000868 641 LLSCVRLL 648 (1247)
Q Consensus 641 v~~~l~LL 648 (1247)
...++.++
T Consensus 167 ~Eaa~a~l 174 (308)
T KOG1585|consen 167 TEAATAFL 174 (308)
T ss_pred hHHHHHHH
Confidence 66665554
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=2.4e+02 Score=34.56 Aligned_cols=116 Identities=21% Similarity=0.120 Sum_probs=79.6
Q ss_pred HHHHHhhcCHHHHHHHHHH--HHHHHHHHHHhc---CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcch
Q 000868 544 PNLLKSLSSVEEFEQKYLE--LTKGAANNYHCS---WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQD 618 (1247)
Q Consensus 544 ~~L~~AL~S~e~F~~~Y~~--Lt~~Ai~~yk~~---~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~ 618 (1247)
+.+..||. +-|+. -.+.||..|+.+ |-.-. ..-+.||.+|=+.+|+++|+.+|......+-.+|=..
T Consensus 432 sRlw~aLG------~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 432 SRLWVALG------ECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hHHHHHHH------HHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 56777775 34444 367899999985 43333 4478999999999999999999999999887777655
Q ss_pred HHH-HHHHHHHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 000868 619 LLA-EVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISL 670 (1247)
Q Consensus 619 L~~-~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~ 670 (1247)
-++ .....+++-.+++++.++--.+|...++ +....++...+..++.+.
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~---~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK---GETECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---CCchHHHHHHHHHHHHHh
Confidence 432 3444577777788887765556665553 323334555677776543
No 68
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.37 E-value=64 Score=34.76 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=53.6
Q ss_pred CcceeCceEEEEEEEEeeccchhhhcccCCceEEEEEee---CCCcE-EEEeeeeeeEEeeCCCCceEEEEEEEEEccCC
Q 000868 1130 DGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNA---NADNW-MIAGRKRGYVSLPTKQGSRIVISILCVPLLAG 1205 (1247)
Q Consensus 1130 ~~~rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~---~s~~W-mvsG~k~g~vs~~~~~~~~~~~~~~liPL~aG 1205 (1247)
.+.-+|+-+.++|.|.|.-+..- .++ +|.+ +++.| +++|-....+. ...+|+..+..+.+.|...|
T Consensus 32 ~~~v~g~~v~V~~~iyN~G~~~A-------~dV--~l~D~~fp~~~F~lvsG~~s~~~~-~i~pg~~vsh~~vv~p~~~G 101 (181)
T PF05753_consen 32 KYLVEGEDVTVTYTIYNVGSSAA-------YDV--KLTDDSFPPEDFELVSGSLSASWE-RIPPGENVSHSYVVRPKKSG 101 (181)
T ss_pred ccccCCcEEEEEEEEEECCCCeE-------EEE--EEECCCCCccccEeccCceEEEEE-EECCCCeEEEEEEEeeeeeE
Confidence 34447999999999999854331 233 3322 12343 48886666553 22459999999999999999
Q ss_pred CCCCCccccc
Q 000868 1206 YVRPPQLGLP 1215 (1247)
Q Consensus 1206 ~l~lP~l~l~ 1215 (1247)
+..+....++
T Consensus 102 ~f~~~~a~Vt 111 (181)
T PF05753_consen 102 YFNFTPAVVT 111 (181)
T ss_pred EEEccCEEEE
Confidence 9999998884
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=42.90 E-value=2.2e+02 Score=29.10 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 000868 564 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 564 t~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~ 642 (1247)
.+.|+..|..+=+.. .-......+|..+...|+|++|...|..++.. .-++. ..+..++.|+..+|+.++=+.
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~----~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHP----EPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCc----HHHHHHHHHHHHcCCHHHHHH
Confidence 345667676643111 11234678999999999999999999999974 33333 445567789999999988777
Q ss_pred HHHHHhcc
Q 000868 643 SCVRLLSL 650 (1247)
Q Consensus 643 ~~l~LLs~ 650 (1247)
.+-+.+..
T Consensus 114 ~~~~Al~~ 121 (144)
T PRK15359 114 AFQTAIKM 121 (144)
T ss_pred HHHHHHHh
Confidence 76666643
No 70
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.40 E-value=36 Score=27.90 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 000868 585 GEIAAVCFKHGNYDQAAKSYEKVCA 609 (1247)
Q Consensus 585 ~dLA~l~y~~gdy~~A~~~f~~~~~ 609 (1247)
.|||.-|+..||++.|-.++..++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999985
No 71
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=40.76 E-value=43 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYE 605 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~ 605 (1247)
....+|..++.+||+++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35679999999999999998875
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=40.31 E-value=92 Score=32.64 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.5
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~ 643 (1247)
....+|..++..|+|++|..+|..++.......|. ...+..++.|+.++++.++-+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR---SYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 45788999999999999999999998765544332 34556667777777776543333
No 73
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.00 E-value=48 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.2
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~ 610 (1247)
+..-||.=||+.|||.+|..+...++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3567899999999999999999988863
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.69 E-value=92 Score=31.68 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchh
Q 000868 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 581 ~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~e 639 (1247)
..+...||.+++..|+|++|+..|..+ ..+.|... ......+++...|+.++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~~---~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI----PDEAFKAL---AAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHHH---HHHHHHHHHHHCCCHHH
Confidence 356788999999999999999999663 35667644 44556777777777654
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=38.46 E-value=70 Score=41.74 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH----hhhCCcchHHHHHHHHHHHHHHHhccc
Q 000868 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----YSGEGWQDLLAEVLPNLAECQKILNDE 637 (1247)
Q Consensus 563 Lt~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~----Y~~egW~~L~~~~L~~~a~C~k~L~~~ 637 (1247)
-.+.|+..|.++= =.-...-+-+-||.+|.++|+.++|+..+..+... -..++|+. +.-|+-..+.-+.+.++.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~-e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP-ERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH-HHHHHHHHHHHHHHhhhH
Confidence 4667777777651 11222234577999999999999999999987621 23566874 445555555556679999
Q ss_pred hhHHHHHHHHhcc
Q 000868 638 AGYLLSCVRLLSL 650 (1247)
Q Consensus 638 ~eYv~~~l~LLs~ 650 (1247)
++|+.+..+|+..
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.95 E-value=51 Score=30.06 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHH
Q 000868 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEK 606 (1247)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~ 606 (1247)
++|+..+...+....-.....-+|..++.+|+|++|+..|..
T Consensus 42 ~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 42 EEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 444455544221122234456779999999999999999875
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=36.67 E-value=1.1e+02 Score=30.02 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchh
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~e 639 (1247)
.....+|..++..|+|++|...|..+......+ ..+...++.|+.++++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999998865433 2344455666666655544
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=36.50 E-value=1e+02 Score=33.67 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcC----CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHH
Q 000868 564 TKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI 633 (1247)
Q Consensus 564 t~~Ai~~yk~~~----R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~ 633 (1247)
.+.|+..|...- ...........+|..|+..|+|++|...|..++..+-. ++..- ..+-+...|+.+
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~--~a~~~~g~~~~~ 119 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD--YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH--HHHHHHHHHHHH
Confidence 455666665542 11233455688889999999999999999998887764 33321 234444555543
No 79
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=34.74 E-value=47 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHH
Q 000868 221 ESLAFMFEMAHLHEDALREYDELELCY 247 (1247)
Q Consensus 221 E~LA~~fe~~~L~edAL~~YdeL~~~~ 247 (1247)
-.+|.+|...|.+++|...|+++-..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 468999999999999999999987654
No 80
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=72 Score=38.21 Aligned_cols=66 Identities=30% Similarity=0.425 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhCCc---------chHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 000868 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGW---------QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1247)
Q Consensus 586 dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW---------~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~ 651 (1247)
+=|..||++|+|..|..-|..+..+...+.= ..+-...+..++-|+-||++...-+..|.+.|...
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4567889999999999999998887663332 22334566678889999999999999998888654
No 81
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=33.01 E-value=4.9e+02 Score=29.83 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=58.9
Q ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 000868 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFK-HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 565 ~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~-~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~ 642 (1247)
+.|=.-|+.|. +.+..-.+-+..|.+-|+ .+|.+.|.++|...+..|..+ ..+...|++.+.++++. +-++
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~~~d~-~~aR 90 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIKLNDI-NNAR 90 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-H-HHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhCcH-HHHH
Confidence 34444455553 334445667788998666 788888999999999999886 35556788888888754 4555
Q ss_pred HHHHHhccCCCCCCHHH-HHHHHHHHHHH
Q 000868 643 SCVRLLSLDKGLFSTKE-RQAFQSEVISL 670 (1247)
Q Consensus 643 ~~l~LLs~~~~~~s~~~-r~~~~~ell~~ 670 (1247)
..++-.- .. +..+. ...+|+.++++
T Consensus 91 ~lfer~i--~~-l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 91 ALFERAI--SS-LPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHC--CT-SSCHHHCHHHHHHHHHH
T ss_pred HHHHHHH--Hh-cCchhHHHHHHHHHHHH
Confidence 5554331 11 22233 44567766643
No 82
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=32.60 E-value=1.3e+02 Score=34.94 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=65.9
Q ss_pred hhccCCChHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH-----
Q 000868 536 ALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----- 610 (1247)
Q Consensus 536 ~~~~~i~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~----- 610 (1247)
+..+-..+|.+.+++++...=......|.+ ++|-.--..-.....|.+-|..|+|+.|..|+...-.+
T Consensus 91 piv~~le~Pd~~~~~~~~k~~~~~l~~L~e-------~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d 163 (432)
T KOG2758|consen 91 PIVKVLENPDLIAALRSDKDRVQNLQHLQE-------HYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPD 163 (432)
T ss_pred HHHHHHcCHHHHHHHHhhhhHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcc
Confidence 334456789999999877664333333332 23311111233788999999999999999988765543
Q ss_pred --hhhCCcchHHHHHHHHHHHH-HHHhccchhHHHH
Q 000868 611 --YSGEGWQDLLAEVLPNLAEC-QKILNDEAGYLLS 643 (1247)
Q Consensus 611 --Y~~egW~~L~~~~L~~~a~C-~k~L~~~~eYv~~ 643 (1247)
|..--|.-|.+.+|..=-+- ...|++..+|+..
T Consensus 164 ~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 164 RNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 56666999998887654443 4457777777653
No 83
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.38 E-value=1.7e+02 Score=33.42 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=56.5
Q ss_pred hcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccc--hhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 000868 593 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE--AGYLLSCVRLLSLDKGLFSTKERQAFQSEVISL 670 (1247)
Q Consensus 593 ~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~--~eYv~~~l~LLs~~~~~~s~~~r~~~~~ell~~ 670 (1247)
.+++|++|+.++.+-+..+.+.|=..-++++-..+++++.+-+.. ++.+.-..++++... .++.+|..+.++.++-
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP--PEEPERKKFIKAAIKW 79 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS---TT-TTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHH
Confidence 578999999999999999999998888999999999999985433 556666666665432 2223477888888877
Q ss_pred H
Q 000868 671 A 671 (1247)
Q Consensus 671 ~ 671 (1247)
+
T Consensus 80 S 80 (260)
T PF04190_consen 80 S 80 (260)
T ss_dssp H
T ss_pred H
Confidence 6
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=31.99 E-value=93 Score=38.06 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcC----CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000868 562 ELTKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~----R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~ 610 (1247)
.-.+.|+..|..+= ..-.+......+|..|.++|++++|+..|..++..
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677888887752 22223356789999999999999999999999886
No 85
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=31.97 E-value=1.7e+02 Score=37.48 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 000868 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 564 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~ 642 (1247)
.+.|+..|.++- ....-......+|..+++.|+|++|+.+|..++..+.... .++..+..++..+++.++=+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP------DVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHH
Confidence 456666676653 1122224467899999999999999999999988765543 233345555555665544333
No 86
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=30.17 E-value=2e+02 Score=35.67 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcC----Ccch-hHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhcc
Q 000868 562 ELTKGAANNYHCSW----WKRH-GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~----R~Rs-a~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~ 636 (1247)
.-.+.|++.|..|. -+|. ...+-.|+|..|..+.||++|+.+|..+.. +++|+.-...- +.+-|+-.+++
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y~Y--~~a~c~~~l~~ 355 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFYAY--LAAACLLMLGR 355 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHHHH--HHHHHHHhhcc
Confidence 35678888888653 1222 335599999999999999999999988887 89997322111 23445656665
Q ss_pred c
Q 000868 637 E 637 (1247)
Q Consensus 637 ~ 637 (1247)
.
T Consensus 356 ~ 356 (468)
T PF10300_consen 356 E 356 (468)
T ss_pred c
Confidence 5
No 87
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.40 E-value=61 Score=24.77 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Q 000868 221 ESLAFMFEMAHLHEDALREYDELE 244 (1247)
Q Consensus 221 E~LA~~fe~~~L~edAL~~YdeL~ 244 (1247)
..||.+|..+|-+++|...|.+.-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 369999999999999999999844
No 88
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.31 E-value=1.3e+02 Score=37.04 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 586 dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
..|.=+|+.|+|++|..||+.++...-.| ...-...+-|+..+++++.-++.|.+.|.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 44566799999999999999999887776 23334456677777777777777776664
No 89
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.25 E-value=1e+02 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhCC
Q 000868 589 AVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1247)
Q Consensus 589 ~l~y~~gdy~~A~~~f~~~~~~Y~~eg 615 (1247)
..-=..|+|++|..+|.+.+.+|..+.
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~~~~ek 40 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVELCINTS 40 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHhc
Confidence 334467999999999999999998865
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=28.56 E-value=2.6e+02 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 000868 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1247)
Q Consensus 585 ~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LL 648 (1247)
..+|..++..|++++|..+|..+....... ......+++++.+.++.++=+...-+++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666666777777777777666654321 1233345556656666555444443333
No 91
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.43 E-value=1.9e+02 Score=36.75 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=57.6
Q ss_pred HHHHhhcC-HHHHHHHHHHHHHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHH----------Hhh
Q 000868 545 NLLKSLSS-VEEFEQKYLELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA----------LYS 612 (1247)
Q Consensus 545 ~L~~AL~S-~e~F~~~Y~~Lt~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~----------~Y~ 612 (1247)
.|.+.++. .+..+..+.--+..|+..|.+.- .+.-.-++..++|..||.++||.+|..+|..+-. .|.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 34444332 34455555667888999998853 2222337889999999999999999999998863 455
Q ss_pred hCCcchHHHHHHHHHHH
Q 000868 613 GEGWQDLLAEVLPNLAE 629 (1247)
Q Consensus 613 ~egW~~L~~~~L~~~a~ 629 (1247)
.-=|++=...-|.++++
T Consensus 395 T~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 55566655555555543
No 92
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=28.21 E-value=2.5e+02 Score=33.11 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 000868 171 NFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDE 242 (1247)
Q Consensus 171 ~~w~~l~~klK~~il~sFd~r~~~yee~ir~~~~~r~~~~wnf~~~FilkE~LA~~fe~~~L~edAL~~Yde 242 (1247)
+++..+..-+....-.-++..+..|++-++.- |+ +.- ..-.||.+|...|.+++|+..|+.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~------p~-~~~----~~~~la~~~~~~g~~~~A~~~~~~ 94 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD------PE-TVE----LHLALGNLFRRRGEVDRAIRIHQN 94 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC------cc-cHH----HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34444554444444455666666776666531 22 222 223578888888888888876654
No 93
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.75 E-value=2.6e+02 Score=25.35 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=32.2
Q ss_pred eeCceEEEEEEEEeeccchhhhcccCCceEEEEEeeCCCcEEEEeeeeeeEEeeCCCCceEEEEEEEEE
Q 000868 1133 RVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVP 1201 (1247)
Q Consensus 1133 rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~~s~~WmvsG~k~g~vs~~~~~~~~~~~~~~liP 1201 (1247)
..|+.+.+++.|+|...... ..+..++. -++-|-+...-.-...+. +|+..++.+.+-|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~-------~~v~~~l~-~P~GW~~~~~~~~~~~l~--pG~s~~~~~~V~v 60 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL-------TNVSLSLS-LPEGWTVSASPASVPSLP--PGESVTVTFTVTV 60 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B-------SS-EEEEE---TTSE---EEEEE--B---TTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCce-------eeEEEEEe-CCCCccccCCccccccCC--CCCEEEEEEEEEC
Confidence 36899999999999754332 34555543 478999332222233454 4999999888765
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.56 E-value=2.6e+02 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=27.7
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhC
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~e 614 (1247)
+...||.+|.++|++++|..+|..++......
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 57889999999999999999999999764433
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=25.30 E-value=1.8e+02 Score=38.16 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=43.1
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~ 643 (1247)
+-.|+|..+...|.|..|+.||..++... +|.. +.+-...++|++.++.-+.-+..
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~--~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNRE---GYQN--AFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccc--hhhhHHHHHHHHHHhhHHHHHHH
Confidence 45799999999999999999999999854 4444 44445678999998887654433
No 96
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=25.00 E-value=1.2e+02 Score=34.44 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 000868 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1247)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~ 644 (1247)
..+++.|........ .+...+|..|+..|+|++|+.+|...+..... . ..++..|++++...|+.++=+.+-
T Consensus 200 ~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d-----~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 200 REALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D-----PLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHCcCHH--HHHHHHHHHhcccccccccccccccccccccc-c-----cccccccccccccccccccccccc
Confidence 344455555432222 34678899999999999999999998763332 2 345668899998888886644443
No 97
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=24.41 E-value=2.6e+02 Score=32.43 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=48.9
Q ss_pred eeCceEEEEEEEEeeccchhhhcccCCceEEEEEeeCCCcEEE--EeeeeeeEEee------CCCCceEEEEEEEEEccC
Q 000868 1133 RVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMI--AGRKRGYVSLP------TKQGSRIVISILCVPLLA 1204 (1247)
Q Consensus 1133 rVG~~~~l~~~I~~~~~~~~~~~~~~~~~l~yev~~~s~~Wmv--sG~k~g~vs~~------~~~~~~~~~~~~liPL~a 1204 (1247)
.=|++++++++|+|.++-.. ..+...|.+-.|--|| +-+++-+..+. .++|++.+-.+.+.||.|
T Consensus 207 yHGE~isvnV~V~NNsnKtV-------KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pgstl~Kvf~l~Plla 279 (402)
T KOG3865|consen 207 YHGEPISVNVHVTNNSNKTV-------KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPGSTLSKVFTLTPLLA 279 (402)
T ss_pred ecCCceeEEEEEecCCccee-------eeeEEEeEeeceEEEEecccccceeeeeecccCCccCCCCeeeeeEEechhhh
Confidence 47999999999999765543 5666667676676666 34555555543 256889999999999977
Q ss_pred CC
Q 000868 1205 GY 1206 (1247)
Q Consensus 1205 G~ 1206 (1247)
-.
T Consensus 280 nN 281 (402)
T KOG3865|consen 280 NN 281 (402)
T ss_pred cC
Confidence 54
No 98
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=24.39 E-value=1.6e+02 Score=37.69 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchh
Q 000868 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 564 t~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~e 639 (1247)
.++|+..|.++=+..--......+|..|+.+|+|++|+..+..++..-... ...+...+.|+..+++.++
T Consensus 143 ~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~------~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY------SKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 455666666653333334556666667777777777777777666543221 2344455666666666543
No 99
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=24.35 E-value=1.9e+02 Score=37.78 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=22.3
Q ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000868 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1247)
Q Consensus 565 ~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~ 610 (1247)
++|+..|..+- ....-..+...+|..+...|+ .+|+.++..+...
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 45555555532 111112334455566666666 5566666655554
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=24.12 E-value=2.4e+02 Score=29.28 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=44.8
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs 649 (1247)
....+|..+..+|+|++|...|..++...... . -...++..++.|+.++++.++-+..+-+.+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--Y-DRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677899999999999999999998764322 1 1133566677788888887665555544443
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=24.00 E-value=2.3e+02 Score=36.96 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=39.8
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 000868 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1247)
Q Consensus 583 L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LL 648 (1247)
....+|..+++.|+|++|..+|..+....... ..+..++.|+.++++.++-+...-+++
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567888888999999999988888765443 334456667777776665555444444
No 102
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=9.2e+02 Score=28.70 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHH-----HhhhCCcchHHHHHHHHHHHHHHHhc
Q 000868 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA-----LYSGEGWQDLLAEVLPNLAECQKILN 635 (1247)
Q Consensus 561 ~~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~-----~Y~~egW~~L~~~~L~~~a~C~k~L~ 635 (1247)
++..+++++..+.+.-.-....+..++|.+|...||..+|...+.+.-. .+...+=+..-..+=..| ++..+
T Consensus 95 l~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY---yk~~~ 171 (380)
T KOG2908|consen 95 LEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY---YKKIG 171 (380)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH---HHHHH
Confidence 4567788888888874445556799999999999999999999988766 333332222222222223 34468
Q ss_pred cchhHHHHHHHHhccCC-CCCCHHHHH
Q 000868 636 DEAGYLLSCVRLLSLDK-GLFSTKERQ 661 (1247)
Q Consensus 636 ~~~eYv~~~l~LLs~~~-~~~s~~~r~ 661 (1247)
+-.+|-+.+|.-|++.. ...+..+++
T Consensus 172 d~a~yYr~~L~YL~~~d~~~l~~se~~ 198 (380)
T KOG2908|consen 172 DFASYYRHALLYLGCSDIDDLSESEKQ 198 (380)
T ss_pred hHHHHHHHHHHHhccccccccCHHHHH
Confidence 88999999999887642 224445544
No 103
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.41 E-value=94 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.001 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH
Q 000868 220 KESLAFMFEMAHLHEDALREYDELEL 245 (1247)
Q Consensus 220 kE~LA~~fe~~~L~edAL~~YdeL~~ 245 (1247)
|-.||+.|-.||-+|.|....+|+-.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56899999999999999998888764
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=23.23 E-value=2.8e+02 Score=32.25 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 000868 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1247)
Q Consensus 582 ~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~ 644 (1247)
.+..-+|..|+.+|++++|..+|...+...... ..+.......++.|+...|+.++=+...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456778899999999999999999888766431 1111223334556666666665544433
No 105
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.18 E-value=6.1e+02 Score=23.58 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=16.8
Q ss_pred ecCCeEeeCCceEE-EEEcCCCc--CeeEEEE
Q 000868 743 TSTATVLKPGRNTI-TVDLPPQK--PGSYVLG 771 (1247)
Q Consensus 743 s~~~~~L~PG~Nki-~l~~~~~~--~G~y~l~ 771 (1247)
.....+|.||+... ....+... +|.|.+.
T Consensus 50 al~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 50 ALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp --EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred eeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 33577899999774 45555555 9999864
No 106
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=1.3e+02 Score=33.98 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=81.3
Q ss_pred CCChHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH--
Q 000868 540 TISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW-------WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL-- 610 (1247)
Q Consensus 540 ~i~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~yk~~~-------R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~-- 610 (1247)
|+.+..|-+.+++.+-..-.++-|--.+=++|.+-. .+++.-. .-+=|.-.|..|+|.+|.+-|.++.--
T Consensus 131 glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~-l~q~GN~lfk~~~ykEA~~~YreAi~~l~ 209 (329)
T KOG0545|consen 131 GLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPV-LHQEGNRLFKLGRYKEASSKYREAIICLR 209 (329)
T ss_pred CCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHH-HHHhhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 556777777788777777777777777778887753 4444443 345677889999999999988776642
Q ss_pred -------hhhCCcchHH---HHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 000868 611 -------YSGEGWQDLL---AEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1247)
Q Consensus 611 -------Y~~egW~~L~---~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~ 652 (1247)
-.+.-|-.|. +.+|..|+.|+-+.++--+-+..|.++|..+.
T Consensus 210 ~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 210 NLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 3355588877 56888898898776766777888988886543
No 107
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=22.54 E-value=3.2e+02 Score=27.46 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=23.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccc
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~ 637 (1247)
...+|..+...|+|++|+.++..++..+--+ -.+-..+.+|+..+|+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCH
Confidence 3345555566666666666666666543221 12223344555555555
No 108
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.24 E-value=1.7e+02 Score=30.23 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCC
Q 000868 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1247)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~eg 615 (1247)
-...+...-.+||-.||..|+|.+|+.-+++.+..+-.+-
T Consensus 42 ~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 42 FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3466678899999999999999999999999998876654
No 109
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.88 E-value=3.5e+02 Score=30.52 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred HhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 000868 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1247)
Q Consensus 592 y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv~~~l~LLs~~~ 652 (1247)
--.+.|+.|..+|.+....|+-..=|...|.-....++|+.+.++..|--.+.++..-+++
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk 85 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK 85 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Confidence 3445799999999999999886554445666667789999999988776666665554443
No 110
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.49 E-value=1.1e+02 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 000868 220 KESLAFMFEMAHLHEDALREYDELELCY 247 (1247)
Q Consensus 220 kE~LA~~fe~~~L~edAL~~YdeL~~~~ 247 (1247)
...||..|...|.+++|+..|.+.-...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4689999999999999999998876554
No 111
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.98 E-value=1.3e+02 Score=23.88 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH
Q 000868 220 KESLAFMFEMAHLHEDALREYDELELC 246 (1247)
Q Consensus 220 kE~LA~~fe~~~L~edAL~~YdeL~~~ 246 (1247)
...||+.|...|.+++|...|+..-..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357999999999999999998886554
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=20.34 E-value=2.6e+02 Score=32.47 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHhccchhHH
Q 000868 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1247)
Q Consensus 581 ~~L~~dLA~l~y~~gdy~~A~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~eYv 641 (1247)
..+..-+|..+.++|+|++|..++..++. .+-. ...+|-..+-|..++|...+-+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~---~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPN---DPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CC---HHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccC---CHHHHHHHHHHHHHhCCChhHH
Confidence 45677899999999999999999999764 2222 3678888999999998884433
No 113
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.23 E-value=91 Score=30.61 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1247)
Q Consensus 584 ~~dLA~l~y~~gdy~~A~~~f~~~~~~ 610 (1247)
-.+|+.||+.+|.+.+|+.++......
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 457999999999999999999998884
Done!