Query 000868
Match_columns 1247
No_of_seqs 225 out of 278
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:22:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000868.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_638-642//hhsearch_pdb/000868hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 33.5 11.2 87 562-648 136-222 (307)
2 1qqe_A Vesicular transport pro 1.0 1 1 32.3 11.6 84 566-649 143-227 (292)
3 2v5f_A Prolyl 4-hydroxylase su 1.0 1 1 30.6 9.7 88 584-671 8-96 (104)
4 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 30.3 13.4 76 564-642 178-253 (307)
5 3q15_A PSP28, response regulat 1.0 1 1 29.8 11.0 35 581-615 261-295 (378)
6 3ro3_A PINS homolog, G-protein 1.0 1 1 29.6 11.4 78 564-641 72-149 (164)
7 3gw4_A Uncharacterized protein 1.0 1 1 29.0 11.5 86 561-646 86-172 (203)
8 3ro3_A PINS homolog, G-protein 1.0 1 1 28.7 11.6 82 563-644 31-112 (164)
9 3ulq_A Response regulator aspa 1.0 1 1 28.7 11.8 72 564-636 247-318 (383)
10 3ulq_A Response regulator aspa 1.0 1 1 28.4 11.6 26 584-609 342-367 (383)
No 1
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=33.54 Aligned_cols=87 Identities=16% Similarity=0.052 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999999988428813358985999999975189999999999999776208950179989999999999924612099
Q 000868 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1247)
Q Consensus 562 ~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~~~~Yv 641 (1247)
+..++|+..+...+..+.+..+...+|.+|..+|+|++|..+|..++..+...+........+...+.|+..+++.++-+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999998479854799999999999998188999999999999999986785479999999999999739889999
Q ss_pred HHHHHHH
Q ss_conf 9999982
Q 000868 642 LSCVRLL 648 (1247)
Q Consensus 642 ~~~l~LL 648 (1247)
...-+.+
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999973
No 2
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=32.29 Aligned_cols=84 Identities=17% Similarity=0.005 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999988428813358985999999975189999999999999776208950-179989999999999924612099999
Q 000868 566 GAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ-DLLAEVLPNLAECQKILNDEAGYLLSC 644 (1247)
Q Consensus 566 ~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~-~L~~~iL~~~a~C~k~L~~~~~Yv~~~ 644 (1247)
+|++.+...+....+..+...+|.+|+.+|+|++|..+|..+.......+.. ......+..+..|+..+++.++-+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999884898678999999999999980889999999999999873697451799999999999998729999999999
Q ss_pred HHHHC
Q ss_conf 99821
Q 000868 645 VRLLS 649 (1247)
Q Consensus 645 l~LLs 649 (1247)
-+.+.
T Consensus 223 ~~al~ 227 (292)
T 1qqe_A 223 QEGQS 227 (292)
T ss_dssp HGGGC
T ss_pred HHHHH
T ss_conf 99986
No 3
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=1.00 E-value=1 Score=30.55 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=63.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 59999999751899999999999997762089-50179989999999999924612099999998213779999899999
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQA 662 (1247)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~eg-W~~L~~~iL~~~a~C~k~L~~~~~Yv~~~l~LLs~~~~~~s~~~r~~ 662 (1247)
-.+||..+|..|+|..|...|..++..+..+. +..-...++..++.|+.++|+.+.-+...-+++...+..........
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999873364999999999997410267873339999999999999855899999999999851999899994599
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q 000868 663 FQSEVISLA 671 (1247)
Q Consensus 663 ~~~ell~~~ 671 (1247)
+++.+++..
T Consensus 88 ~~~~~~~~~ 96 (104)
T 2v5f_A 88 YFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
T ss_conf 999999754
No 4
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=30.29 Aligned_cols=76 Identities=14% Similarity=-0.042 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999884288133589859999999751899999999999997762089501799899999999999246120999
Q 000868 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 564 t~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~~~~Yv~ 642 (1247)
.++++..+...+...........+|..|+.+|+|.+|..+|..++ .... ....-+...+..+++.. ..++.+.|-.
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~-~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG-FSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT-STTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCC-CCCCHHHHHHHHHHHHH-HHCCHHHHHH
T ss_conf 999999999867854799999999999997398899999999973-7888-88878999999999999-8259999999
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=29.84 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89859999999751899999999999997762089
Q 000868 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1247)
Q Consensus 581 ~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~eg 615 (1247)
......+|..|+.+|+|++|..+|..+.......+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999988998999999999999998838
No 6
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=1.00 E-value=1 Score=29.61 Aligned_cols=78 Identities=9% Similarity=-0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 999999988428813358985999999975189999999999999776208950179989999999999924612099
Q 000868 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1247)
Q Consensus 564 t~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~~~~Yv 641 (1247)
.+++++.+...+.......+...+|..++..|+|++|..+|..+.......+........+..++.|+..+++.++-+
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999988709949999999999899999865899999999999999872661758899999999999866879999
No 7
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=1.00 E-value=1 Score=29.02 Aligned_cols=86 Identities=14% Similarity=-0.003 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 999999999988428-8133589859999999751899999999999997762089501799899999999999246120
Q 000868 561 LELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1247)
Q Consensus 561 l~Lt~~Ai~~yk~~~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~~~~ 639 (1247)
++..+++++.+...+ ...........+|..|+.+|+|++|..+|..++......+........+..++.++..+++.++
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999883852789999999899999982889999999999998888465658889999999999998759999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000868 640 YLLSCVR 646 (1247)
Q Consensus 640 Yv~~~l~ 646 (1247)
-....-+
T Consensus 166 A~~~~~~ 172 (203)
T 3gw4_A 166 AQQHWLR 172 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 8
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=1.00 E-value=1 Score=28.70 Aligned_cols=82 Identities=12% Similarity=-0.013 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999884288133589859999999751899999999999997762089501799899999999999246120999
Q 000868 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1247)
Q Consensus 563 Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~~~~Yv~ 642 (1247)
...+++..+...+...........+|..|+.+|+|++|..+|..+...+...+.......++..++.|+..+++.++-+.
T Consensus 31 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 31 AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998487317999999999999980888899999999999988709949999999999899999865899999
Q ss_pred HH
Q ss_conf 99
Q 000868 643 SC 644 (1247)
Q Consensus 643 ~~ 644 (1247)
..
T Consensus 111 ~~ 112 (164)
T 3ro3_A 111 YH 112 (164)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=28.69 Aligned_cols=72 Identities=21% Similarity=-0.008 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999884288133589859999999751899999999999997762089501799899999999999246
Q 000868 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1247)
Q Consensus 564 t~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~C~k~L~~ 636 (1247)
.++|++.+...+.......+...+|..|+.+|+|++|..+|..++......+-...... +..+..+....++
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHCCCC
T ss_conf 99999989861655139999999999998879979999999999999988599999999-9999998838874
No 10
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=28.40 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=9.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 59999999751899999999999997
Q 000868 584 DGEIAAVCFKHGNYDQAAKSYEKVCA 609 (1247)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~l~~~~~ 609 (1247)
...||..|+..|+|++|..+|..++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999978899999999999999
Done!