Query 000869
Match_columns 1247
No_of_seqs 564 out of 6011
Neff 10.4
Searched_HMMs 46136
Date Tue Apr 2 00:27:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.8E-66 1.5E-70 622.2 32.2 470 1-507 187-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.1E-55 1.8E-59 561.0 50.1 659 1-856 215-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.2E-34 6.9E-39 317.6 14.4 248 1-251 27-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-30 2.4E-35 340.2 31.5 513 322-1016 69-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.5E-30 3.2E-35 339.0 29.7 153 344-511 69-224 (968)
6 PLN03210 Resistant to P. syrin 99.9 4.1E-21 8.9E-26 248.9 22.5 296 783-1156 610-910 (1153)
7 KOG4194 Membrane glycoprotein 99.9 5.9E-22 1.3E-26 213.1 9.5 196 323-533 53-257 (873)
8 KOG4194 Membrane glycoprotein 99.8 8.9E-22 1.9E-26 211.8 5.1 318 320-675 100-425 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 1.5E-23 3.3E-28 215.5 -11.3 260 324-620 47-308 (565)
10 KOG0444 Cytoskeletal regulator 99.8 1.5E-22 3.3E-27 218.6 -4.9 334 307-681 39-377 (1255)
11 KOG0618 Serine/threonine phosp 99.8 1.7E-21 3.6E-26 221.9 -2.1 143 327-474 3-147 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 2.2E-22 4.8E-27 207.0 -13.6 176 344-537 45-222 (565)
13 KOG0618 Serine/threonine phosp 99.8 1.1E-20 2.4E-25 215.3 -3.4 130 944-1092 357-487 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 2.1E-20 4.4E-25 202.3 -2.1 174 343-532 6-184 (1255)
15 KOG0617 Ras suppressor protein 99.6 5.8E-17 1.3E-21 147.2 -4.5 167 334-518 23-192 (264)
16 KOG0617 Ras suppressor protein 99.5 6.8E-16 1.5E-20 140.3 -4.5 158 369-538 31-190 (264)
17 KOG4341 F-box protein containi 99.4 9E-15 1.9E-19 153.0 -3.4 140 971-1114 319-459 (483)
18 PRK15387 E3 ubiquitin-protein 99.4 6.4E-12 1.4E-16 150.4 16.6 249 307-620 208-456 (788)
19 KOG4341 F-box protein containi 99.4 5.8E-15 1.3E-19 154.4 -8.3 69 971-1043 267-335 (483)
20 PRK15387 E3 ubiquitin-protein 99.3 1.5E-11 3.2E-16 147.3 16.6 173 323-533 202-374 (788)
21 PRK15370 E3 ubiquitin-protein 99.3 8.9E-12 1.9E-16 150.5 12.2 180 323-534 179-359 (754)
22 PRK15370 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 150.1 12.3 197 307-536 185-382 (754)
23 KOG4237 Extracellular matrix p 99.3 3.7E-13 7.9E-18 139.8 -0.8 260 334-620 58-357 (498)
24 KOG4237 Extracellular matrix p 99.2 1.1E-12 2.4E-17 136.2 -0.5 270 306-594 52-357 (498)
25 KOG4658 Apoptotic ATPase [Sign 99.2 3.3E-11 7.1E-16 148.0 9.4 129 368-510 520-653 (889)
26 PRK04841 transcriptional regul 99.2 2.5E-09 5.4E-14 139.6 24.7 264 1-299 40-333 (903)
27 KOG1259 Nischarin, modulator o 99.0 7.5E-11 1.6E-15 117.8 -0.7 135 369-516 282-416 (490)
28 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.5E-13 118.3 16.6 266 2-301 46-341 (894)
29 PF14580 LRR_9: Leucine-rich r 98.9 5.4E-10 1.2E-14 109.0 3.9 103 372-476 20-125 (175)
30 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.3E-14 107.0 5.0 134 332-471 7-147 (175)
31 KOG0532 Leucine-rich repeat (L 98.9 6.3E-11 1.4E-15 129.3 -4.0 172 327-518 80-253 (722)
32 cd00116 LRR_RI Leucine-rich re 98.9 7E-10 1.5E-14 125.5 3.7 184 321-512 22-234 (319)
33 cd00116 LRR_RI Leucine-rich re 98.8 1.5E-09 3.2E-14 122.9 2.0 133 343-476 22-177 (319)
34 PF05729 NACHT: NACHT domain 98.7 5.7E-08 1.2E-12 97.8 11.5 134 2-140 9-163 (166)
35 TIGR03015 pepcterm_ATPase puta 98.7 7.4E-07 1.6E-11 97.6 20.9 170 1-174 51-242 (269)
36 KOG0532 Leucine-rich repeat (L 98.7 8E-10 1.7E-14 120.8 -3.6 148 322-477 98-247 (722)
37 KOG1259 Nischarin, modulator o 98.7 2.1E-09 4.5E-14 107.7 -0.8 124 321-449 283-409 (490)
38 COG3903 Predicted ATPase [Gene 98.6 6.3E-08 1.4E-12 103.8 7.2 282 1-300 22-316 (414)
39 COG4886 Leucine-rich repeat (L 98.6 3.4E-08 7.4E-13 114.9 5.6 173 342-532 114-288 (394)
40 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.3E-13 108.9 1.0 207 320-533 119-338 (505)
41 KOG3207 Beta-tubulin folding c 98.6 9E-09 2E-13 109.4 -0.1 181 319-512 143-339 (505)
42 COG4886 Leucine-rich repeat (L 98.5 8E-08 1.7E-12 111.8 5.7 177 321-516 115-294 (394)
43 PRK00411 cdc6 cell division co 98.4 3E-05 6.6E-10 90.1 24.4 257 1-277 63-357 (394)
44 PRK15386 type III secretion pr 98.4 1.3E-06 2.8E-11 96.0 9.7 60 971-1044 51-110 (426)
45 PF13855 LRR_8: Leucine rich r 98.3 4.6E-07 1E-11 72.4 4.0 59 344-405 1-60 (61)
46 COG2256 MGS1 ATPase related to 98.2 5.1E-05 1.1E-09 81.3 17.3 203 2-233 57-279 (436)
47 KOG1947 Leucine rich repeat pr 98.2 6.8E-08 1.5E-12 116.7 -5.5 41 971-1011 268-308 (482)
48 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.3E-11 70.3 3.1 58 417-475 2-60 (61)
49 PRK15386 type III secretion pr 98.2 4.8E-06 1E-10 91.6 8.7 70 812-906 51-120 (426)
50 TIGR02928 orc1/cdc6 family rep 98.2 0.00047 1E-08 79.3 25.8 259 1-278 48-350 (365)
51 KOG1947 Leucine rich repeat pr 98.1 2.3E-07 5E-12 112.1 -2.8 96 812-912 187-283 (482)
52 KOG0531 Protein phosphatase 1, 98.1 3.1E-07 6.7E-12 106.7 -1.6 189 323-532 73-266 (414)
53 PF01637 Arch_ATPase: Archaeal 98.1 7.5E-06 1.6E-10 87.8 8.8 165 2-169 29-233 (234)
54 PLN03150 hypothetical protein; 98.1 6.2E-06 1.3E-10 100.3 8.5 102 373-475 420-526 (623)
55 PLN03150 hypothetical protein; 98.1 8.2E-06 1.8E-10 99.3 9.4 107 345-454 419-530 (623)
56 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3.1E-12 95.1 -4.9 119 782-912 208-327 (419)
57 KOG2120 SCF ubiquitin ligase, 98.0 1.6E-07 3.5E-12 94.7 -5.2 89 814-912 186-274 (419)
58 KOG0531 Protein phosphatase 1, 98.0 6.5E-07 1.4E-11 104.0 -2.5 172 342-533 70-244 (414)
59 KOG1859 Leucine-rich repeat pr 98.0 1.2E-07 2.6E-12 107.0 -8.9 175 321-514 108-294 (1096)
60 PRK00080 ruvB Holliday junctio 97.9 0.00013 2.8E-09 81.8 14.7 240 1-277 59-309 (328)
61 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 58.5 3.3 39 372-410 2-40 (44)
62 PRK06893 DNA replication initi 97.9 5.5E-05 1.2E-09 79.5 10.1 145 2-174 48-207 (229)
63 TIGR00635 ruvB Holliday juncti 97.9 0.00041 9E-09 77.3 17.5 240 1-277 38-288 (305)
64 PF13401 AAA_22: AAA domain; P 97.8 6.2E-05 1.3E-09 71.9 8.6 106 2-109 13-125 (131)
65 KOG1909 Ran GTPase-activating 97.8 9.7E-06 2.1E-10 84.6 2.9 40 342-381 28-68 (382)
66 PF13173 AAA_14: AAA domain 97.8 3.6E-05 7.8E-10 72.7 6.3 111 2-132 11-127 (128)
67 KOG3665 ZYG-1-like serine/thre 97.8 1.2E-05 2.7E-10 96.9 3.5 127 320-449 120-260 (699)
68 KOG1909 Ran GTPase-activating 97.8 4.3E-06 9.3E-11 87.1 -0.5 135 342-477 90-254 (382)
69 PF12799 LRR_4: Leucine Rich r 97.8 3.1E-05 6.6E-10 56.2 3.7 39 416-455 1-39 (44)
70 PRK13342 recombination factor 97.7 0.0019 4.2E-08 74.7 19.9 211 2-241 45-268 (413)
71 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00018 3.9E-09 76.4 10.3 145 2-174 47-205 (226)
72 COG3899 Predicted ATPase [Gene 97.6 0.0019 4.2E-08 80.9 19.0 210 70-299 152-387 (849)
73 PF14516 AAA_35: AAA-like doma 97.6 0.015 3.2E-07 65.0 23.3 168 3-177 41-246 (331)
74 TIGR00678 holB DNA polymerase 97.5 0.001 2.2E-08 68.0 12.8 88 71-165 95-186 (188)
75 KOG3665 ZYG-1-like serine/thre 97.5 5E-05 1.1E-09 91.8 3.5 107 343-450 121-231 (699)
76 KOG1644 U2-associated snRNP A' 97.5 0.00014 3.1E-09 70.0 5.8 100 345-449 43-150 (233)
77 PRK14961 DNA polymerase III su 97.5 0.0013 2.8E-08 74.6 14.5 97 71-168 118-218 (363)
78 PRK14949 DNA polymerase III su 97.5 0.0007 1.5E-08 81.8 12.5 99 71-170 118-220 (944)
79 KOG1859 Leucine-rich repeat pr 97.5 3.4E-06 7.4E-11 95.6 -6.7 124 321-449 163-289 (1096)
80 PRK08727 hypothetical protein; 97.5 0.00083 1.8E-08 70.8 11.5 138 2-167 50-201 (233)
81 PRK14960 DNA polymerase III su 97.5 0.0009 1.9E-08 78.3 12.3 97 71-168 117-217 (702)
82 PTZ00112 origin recognition co 97.5 0.0091 2E-07 71.4 20.4 138 1-141 789-950 (1164)
83 PRK07003 DNA polymerase III su 97.5 0.0011 2.4E-08 78.4 13.0 98 71-169 118-220 (830)
84 PRK06645 DNA polymerase III su 97.4 0.002 4.4E-08 75.0 14.7 96 71-167 127-226 (507)
85 cd01128 rho_factor Transcripti 97.4 0.0003 6.4E-09 74.0 6.9 82 2-84 25-115 (249)
86 PRK09376 rho transcription ter 97.4 0.00034 7.3E-09 76.5 7.4 83 1-84 177-268 (416)
87 PRK12323 DNA polymerase III su 97.4 0.0011 2.4E-08 77.4 11.9 99 71-170 123-225 (700)
88 PRK04195 replication factor C 97.4 0.013 2.7E-07 69.5 20.9 211 2-251 48-271 (482)
89 KOG1644 U2-associated snRNP A' 97.4 0.00027 5.8E-09 68.2 5.4 99 324-425 44-149 (233)
90 PRK14087 dnaA chromosomal repl 97.3 0.002 4.4E-08 74.7 13.5 159 2-174 150-323 (450)
91 PRK14963 DNA polymerase III su 97.3 0.0028 6.1E-08 74.3 14.5 97 71-168 115-215 (504)
92 PRK05564 DNA polymerase III su 97.3 0.0033 7.1E-08 70.0 13.9 145 2-168 35-188 (313)
93 PRK08084 DNA replication initi 97.3 0.0014 3.1E-08 69.2 10.3 145 2-174 54-213 (235)
94 KOG4579 Leucine-rich repeat (L 97.3 3.2E-05 6.8E-10 69.2 -1.9 107 325-434 30-141 (177)
95 KOG2982 Uncharacterized conser 97.3 7E-05 1.5E-09 76.2 0.2 85 414-509 69-156 (418)
96 PF00308 Bac_DnaA: Bacterial d 97.2 0.0019 4E-08 67.2 10.5 156 2-174 43-212 (219)
97 COG1474 CDC6 Cdc6-related prot 97.2 0.016 3.6E-07 64.8 17.9 166 2-170 51-238 (366)
98 KOG2982 Uncharacterized conser 97.2 0.00017 3.8E-09 73.4 1.9 103 326-429 49-159 (418)
99 COG5238 RNA1 Ran GTPase-activa 97.1 0.00034 7.3E-09 70.4 3.5 95 410-512 86-198 (388)
100 PRK08903 DnaA regulatory inact 97.1 0.0024 5.2E-08 67.6 10.3 142 2-175 51-204 (227)
101 PRK14964 DNA polymerase III su 97.1 0.0054 1.2E-07 70.8 13.7 148 2-167 44-214 (491)
102 PRK12402 replication factor C 97.1 0.0045 9.7E-08 70.4 13.2 167 2-169 45-225 (337)
103 PRK14957 DNA polymerase III su 97.1 0.0058 1.3E-07 71.7 13.9 99 71-170 118-221 (546)
104 PRK05642 DNA replication initi 97.1 0.0034 7.3E-08 66.2 11.0 145 2-174 54-212 (234)
105 PLN03025 replication factor C 97.1 0.0031 6.6E-08 70.4 11.1 147 2-164 43-194 (319)
106 PRK08691 DNA polymerase III su 97.1 0.0034 7.5E-08 74.4 11.6 98 71-169 118-219 (709)
107 PRK07994 DNA polymerase III su 97.1 0.0037 8.1E-08 74.5 12.0 99 71-170 118-220 (647)
108 PRK14956 DNA polymerase III su 97.1 0.0046 1E-07 70.5 12.1 95 71-166 120-218 (484)
109 TIGR02397 dnaX_nterm DNA polym 97.0 0.0091 2E-07 68.4 14.8 100 71-171 116-219 (355)
110 PRK09087 hypothetical protein; 97.0 0.0031 6.7E-08 65.9 9.7 99 75-174 90-199 (226)
111 PRK14958 DNA polymerase III su 97.0 0.004 8.8E-08 73.2 11.7 149 2-168 47-218 (509)
112 PRK07940 DNA polymerase III su 97.0 0.0071 1.5E-07 68.5 13.1 92 71-168 116-211 (394)
113 PRK14951 DNA polymerase III su 97.0 0.0068 1.5E-07 72.2 13.4 98 71-169 123-224 (618)
114 PRK14962 DNA polymerase III su 97.0 0.028 6.1E-07 65.4 18.1 102 71-173 116-222 (472)
115 PRK14969 DNA polymerase III su 97.0 0.0049 1.1E-07 73.0 12.1 95 71-166 118-216 (527)
116 PRK09112 DNA polymerase III su 97.0 0.0038 8.2E-08 69.6 10.5 108 59-169 124-239 (351)
117 PRK00440 rfc replication facto 96.9 0.027 5.9E-07 63.4 17.3 150 2-168 47-201 (319)
118 PRK14959 DNA polymerase III su 96.9 0.0067 1.4E-07 71.7 12.4 102 71-173 118-224 (624)
119 PRK05896 DNA polymerase III su 96.9 0.0083 1.8E-07 70.5 12.9 95 72-167 119-217 (605)
120 PRK07471 DNA polymerase III su 96.9 0.013 2.9E-07 65.7 14.2 107 59-170 124-238 (365)
121 KOG2028 ATPase related to the 96.9 0.05 1.1E-06 57.7 16.9 142 2-165 171-331 (554)
122 PF05621 TniB: Bacterial TniB 96.9 0.014 3E-07 61.8 12.8 166 2-168 70-259 (302)
123 TIGR01242 26Sp45 26S proteasom 96.9 0.0062 1.3E-07 69.4 11.2 141 2-164 165-328 (364)
124 PRK13341 recombination factor 96.8 0.03 6.6E-07 68.5 17.1 92 71-165 108-212 (725)
125 cd00009 AAA The AAA+ (ATPases 96.8 0.0041 8.9E-08 60.8 8.1 96 2-111 28-131 (151)
126 KOG4579 Leucine-rich repeat (L 96.8 0.00019 4.2E-09 64.3 -1.4 83 323-409 54-138 (177)
127 PRK08451 DNA polymerase III su 96.8 0.018 4E-07 67.2 14.2 99 71-170 116-218 (535)
128 PRK05707 DNA polymerase III su 96.8 0.018 3.8E-07 63.7 13.3 94 71-169 105-202 (328)
129 TIGR00767 rho transcription te 96.7 0.0046 1E-07 68.2 8.2 82 2-84 177-267 (415)
130 TIGR00362 DnaA chromosomal rep 96.7 0.015 3.2E-07 67.6 12.9 152 2-170 145-310 (405)
131 PRK09111 DNA polymerase III su 96.7 0.016 3.4E-07 69.4 13.1 99 71-170 131-233 (598)
132 PRK14955 DNA polymerase III su 96.7 0.012 2.5E-07 67.8 11.7 98 71-169 126-227 (397)
133 PRK14088 dnaA chromosomal repl 96.7 0.037 8.1E-07 64.3 15.9 151 2-169 139-304 (440)
134 COG3267 ExeA Type II secretory 96.7 0.064 1.4E-06 54.7 15.1 168 3-173 61-248 (269)
135 PRK07133 DNA polymerase III su 96.7 0.025 5.4E-07 68.1 14.4 98 71-169 117-218 (725)
136 PRK14953 DNA polymerase III su 96.6 0.031 6.7E-07 65.5 14.9 100 71-171 118-221 (486)
137 TIGR02881 spore_V_K stage V sp 96.6 0.012 2.6E-07 63.5 10.6 124 2-141 51-192 (261)
138 TIGR02880 cbbX_cfxQ probable R 96.6 0.024 5.2E-07 61.7 12.7 124 2-141 67-209 (284)
139 PRK07764 DNA polymerase III su 96.6 0.024 5.3E-07 70.3 13.9 97 71-168 119-219 (824)
140 PRK14954 DNA polymerase III su 96.5 0.032 6.9E-07 66.9 13.8 94 71-165 126-223 (620)
141 PRK14948 DNA polymerase III su 96.5 0.037 8.1E-07 66.8 14.5 99 71-170 120-222 (620)
142 PRK14950 DNA polymerase III su 96.5 0.038 8.2E-07 66.9 14.6 101 71-172 119-223 (585)
143 PRK14952 DNA polymerase III su 96.4 0.042 9E-07 65.4 14.3 94 71-165 117-214 (584)
144 PRK14086 dnaA chromosomal repl 96.3 0.049 1.1E-06 64.2 14.0 150 2-168 323-486 (617)
145 CHL00181 cbbX CbbX; Provisiona 96.3 0.048 1E-06 59.3 13.1 124 2-141 68-210 (287)
146 PRK00149 dnaA chromosomal repl 96.3 0.032 7E-07 65.6 12.8 151 2-169 157-321 (450)
147 PRK14971 DNA polymerase III su 96.3 0.052 1.1E-06 65.6 14.3 97 71-168 120-220 (614)
148 PRK06305 DNA polymerase III su 96.3 0.05 1.1E-06 63.3 13.7 95 71-166 120-218 (451)
149 PF00004 AAA: ATPase family as 96.3 0.012 2.7E-07 55.9 7.5 63 2-84 7-70 (132)
150 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.6E-08 65.3 2.0 82 393-477 42-129 (260)
151 PRK07399 DNA polymerase III su 96.2 0.18 3.9E-06 55.6 17.1 165 2-170 35-221 (314)
152 PRK06647 DNA polymerase III su 96.2 0.067 1.5E-06 63.8 14.7 99 71-170 118-220 (563)
153 PRK12422 chromosomal replicati 96.2 0.052 1.1E-06 62.9 13.3 144 2-164 150-307 (445)
154 PRK04132 replication factor C 96.2 0.087 1.9E-06 65.0 15.4 150 2-167 575-728 (846)
155 KOG2123 Uncharacterized conser 96.1 0.00049 1.1E-08 69.6 -3.4 78 343-426 18-98 (388)
156 PRK06620 hypothetical protein; 96.0 0.026 5.6E-07 58.4 8.8 95 73-170 86-189 (214)
157 KOG2739 Leucine-rich acidic nu 96.0 0.0032 6.9E-08 64.1 2.0 58 392-449 89-153 (260)
158 PRK14970 DNA polymerase III su 96.0 0.096 2.1E-06 60.0 13.9 96 71-167 107-206 (367)
159 PF05496 RuvB_N: Holliday junc 95.9 0.033 7.1E-07 56.2 8.6 67 103-170 153-221 (233)
160 KOG2123 Uncharacterized conser 95.9 0.00042 9.1E-09 70.0 -4.7 105 393-505 18-123 (388)
161 TIGR02903 spore_lon_C ATP-depe 95.9 0.073 1.6E-06 64.6 13.1 111 61-173 282-398 (615)
162 PRK08769 DNA polymerase III su 95.9 0.11 2.3E-06 57.0 13.1 92 71-169 112-207 (319)
163 PRK03992 proteasome-activating 95.9 0.059 1.3E-06 61.7 11.7 141 2-164 174-337 (389)
164 smart00382 AAA ATPases associa 95.8 0.022 4.7E-07 55.2 7.1 82 2-86 11-92 (148)
165 KOG0741 AAA+-type ATPase [Post 95.8 0.075 1.6E-06 59.4 11.2 135 2-160 547-704 (744)
166 PHA02544 44 clamp loader, smal 95.7 0.047 1E-06 61.2 10.0 115 2-139 52-172 (316)
167 PRK06090 DNA polymerase III su 95.7 0.29 6.3E-06 53.6 15.4 91 71-170 107-201 (319)
168 PRK05563 DNA polymerase III su 95.6 0.18 3.9E-06 60.6 14.8 96 71-167 118-217 (559)
169 PRK11331 5-methylcytosine-spec 95.6 0.018 3.9E-07 64.9 5.9 81 1-84 202-284 (459)
170 PTZ00361 26 proteosome regulat 95.6 0.04 8.7E-07 63.1 8.8 141 2-164 226-389 (438)
171 PRK06871 DNA polymerase III su 95.6 0.18 3.9E-06 55.4 13.3 150 2-165 33-198 (325)
172 KOG0989 Replication factor C, 95.6 0.039 8.5E-07 57.5 7.6 150 2-163 66-223 (346)
173 CHL00195 ycf46 Ycf46; Provisio 95.5 0.2 4.3E-06 58.5 14.0 143 2-164 268-429 (489)
174 KOG2543 Origin recognition com 95.4 0.21 4.5E-06 54.0 12.6 134 2-140 39-193 (438)
175 COG1222 RPT1 ATP-dependent 26S 95.3 0.29 6.2E-06 52.6 12.9 164 2-188 194-391 (406)
176 COG0593 DnaA ATPase involved i 95.2 0.57 1.2E-05 52.6 15.9 122 2-140 122-257 (408)
177 PRK14965 DNA polymerase III su 95.2 0.16 3.6E-06 61.2 12.7 99 71-170 118-221 (576)
178 CHL00176 ftsH cell division pr 95.2 0.24 5.2E-06 60.0 14.0 139 2-162 225-386 (638)
179 TIGR03689 pup_AAA proteasome A 95.2 0.21 4.6E-06 58.2 12.9 128 2-142 225-380 (512)
180 KOG2227 Pre-initiation complex 95.1 0.72 1.6E-05 51.5 15.8 164 2-168 184-366 (529)
181 PRK12608 transcription termina 95.1 0.11 2.3E-06 57.4 9.7 82 2-84 142-232 (380)
182 PRK08116 hypothetical protein; 95.1 0.06 1.3E-06 57.9 7.7 94 2-110 123-221 (268)
183 PTZ00454 26S protease regulato 95.1 0.18 3.9E-06 57.5 11.8 141 2-164 188-351 (398)
184 TIGR02639 ClpA ATP-dependent C 95.0 0.13 2.8E-06 64.4 11.5 125 2-140 212-358 (731)
185 PF00560 LRR_1: Leucine Rich R 95.0 0.0082 1.8E-07 36.0 0.5 21 417-437 1-21 (22)
186 PRK08058 DNA polymerase III su 95.0 0.27 5.9E-06 54.9 12.7 69 71-139 109-181 (329)
187 PRK07993 DNA polymerase III su 94.9 0.35 7.7E-06 53.8 13.4 103 58-166 90-200 (334)
188 TIGR03345 VI_ClpV1 type VI sec 94.8 0.18 3.8E-06 63.8 11.9 147 2-162 217-388 (852)
189 TIGR02640 gas_vesic_GvpN gas v 94.8 0.33 7.2E-06 52.3 12.5 34 2-40 30-63 (262)
190 COG1373 Predicted ATPase (AAA+ 94.6 0.21 4.5E-06 57.3 10.9 112 2-136 46-163 (398)
191 PF04665 Pox_A32: Poxvirus A32 94.5 0.094 2E-06 54.3 6.8 28 2-31 22-49 (241)
192 PF13306 LRR_5: Leucine rich r 94.4 0.12 2.6E-06 48.8 7.2 39 363-402 27-66 (129)
193 CHL00095 clpC Clp protease ATP 94.4 0.27 5.8E-06 62.5 12.2 125 2-140 209-354 (821)
194 PRK08181 transposase; Validate 94.4 0.056 1.2E-06 57.7 5.1 92 2-111 115-210 (269)
195 PRK06964 DNA polymerase III su 94.3 0.69 1.5E-05 51.3 13.7 103 58-169 114-224 (342)
196 PF00560 LRR_1: Leucine Rich R 94.3 0.017 3.6E-07 34.6 0.6 21 372-392 1-21 (22)
197 PF13306 LRR_5: Leucine rich r 94.2 0.11 2.5E-06 49.0 6.5 106 362-473 3-112 (129)
198 TIGR01241 FtsH_fam ATP-depende 94.1 0.4 8.8E-06 57.2 12.2 147 2-170 97-267 (495)
199 KOG3864 Uncharacterized conser 94.1 0.0064 1.4E-07 59.2 -2.4 60 1138-1197 124-184 (221)
200 KOG0733 Nuclear AAA ATPase (VC 94.0 0.57 1.2E-05 53.8 12.2 120 2-141 554-693 (802)
201 TIGR02237 recomb_radB DNA repa 93.6 0.24 5.3E-06 51.5 8.2 38 2-42 21-58 (209)
202 KOG3864 Uncharacterized conser 93.5 0.0079 1.7E-07 58.5 -2.8 67 971-1042 124-190 (221)
203 COG2812 DnaX DNA polymerase II 93.5 0.6 1.3E-05 54.2 11.6 156 2-165 47-215 (515)
204 PF08423 Rad51: Rad51; InterP 93.5 0.38 8.1E-06 51.4 9.4 48 2-50 47-98 (256)
205 PRK10536 hypothetical protein; 93.5 0.22 4.7E-06 52.0 7.2 28 2-29 83-110 (262)
206 PF13191 AAA_16: AAA ATPase do 93.4 0.17 3.8E-06 51.4 6.7 20 1-20 32-51 (185)
207 PF13177 DNA_pol3_delta2: DNA 93.4 0.35 7.5E-06 47.6 8.3 109 2-128 28-162 (162)
208 PRK06921 hypothetical protein; 93.3 0.15 3.3E-06 54.7 6.2 62 2-82 126-187 (266)
209 PRK06526 transposase; Provisio 93.3 0.083 1.8E-06 56.1 4.2 65 2-84 107-171 (254)
210 PTZ00202 tuzin; Provisional 93.3 0.34 7.4E-06 54.0 8.7 130 1-140 294-434 (550)
211 COG1066 Sms Predicted ATP-depe 93.2 0.29 6.3E-06 53.7 8.0 77 2-84 102-180 (456)
212 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.37 7.9E-06 51.3 8.9 80 2-82 28-125 (235)
213 TIGR02012 tigrfam_recA protein 93.0 0.3 6.4E-06 53.4 7.7 75 2-83 64-144 (321)
214 cd01133 F1-ATPase_beta F1 ATP 92.9 0.44 9.5E-06 50.6 8.6 80 2-83 78-174 (274)
215 PRK11034 clpA ATP-dependent Cl 92.8 0.45 9.7E-06 58.9 9.9 126 2-140 216-362 (758)
216 TIGR03346 chaperone_ClpB ATP-d 92.8 0.84 1.8E-05 58.3 12.7 125 2-140 203-349 (852)
217 KOG0735 AAA+-type ATPase [Post 92.7 0.49 1.1E-05 55.4 9.2 150 2-170 440-616 (952)
218 COG5238 RNA1 Ran GTPase-activa 92.7 0.084 1.8E-06 53.8 2.8 44 341-384 89-133 (388)
219 PRK09183 transposase/IS protei 92.6 0.2 4.4E-06 53.6 5.9 65 2-83 111-175 (259)
220 TIGR03345 VI_ClpV1 type VI sec 92.6 0.5 1.1E-05 59.8 10.1 76 2-84 605-680 (852)
221 PRK09354 recA recombinase A; P 92.5 0.39 8.5E-06 53.0 8.0 75 2-83 69-149 (349)
222 cd00561 CobA_CobO_BtuR ATP:cor 92.5 0.7 1.5E-05 44.7 8.8 109 2-112 11-140 (159)
223 PRK07132 DNA polymerase III su 92.5 1.9 4.1E-05 47.0 13.1 145 2-169 27-184 (299)
224 PF01695 IstB_IS21: IstB-like 92.4 0.1 2.3E-06 52.1 3.2 65 2-84 56-120 (178)
225 PF10443 RNA12: RNA12 protein; 92.4 3.2 6.9E-05 46.7 14.7 102 72-177 148-285 (431)
226 PRK08939 primosomal protein Dn 92.4 0.23 5E-06 54.4 6.1 90 2-109 165-260 (306)
227 TIGR02238 recomb_DMC1 meiotic 92.4 0.42 9.1E-06 52.6 8.1 49 2-51 105-157 (313)
228 TIGR00602 rad24 checkpoint pro 92.4 0.33 7.1E-06 58.4 7.8 162 2-170 119-324 (637)
229 TIGR02639 ClpA ATP-dependent C 92.3 0.52 1.1E-05 59.1 9.9 73 2-84 493-565 (731)
230 COG0470 HolB ATPase involved i 92.3 0.63 1.4E-05 52.5 9.9 115 2-132 33-173 (325)
231 cd00983 recA RecA is a bacter 92.3 0.38 8.3E-06 52.6 7.5 74 2-82 64-143 (325)
232 PRK07952 DNA replication prote 92.3 0.43 9.3E-06 50.2 7.6 67 2-84 108-174 (244)
233 PRK04296 thymidine kinase; Pro 92.2 0.14 3.1E-06 51.9 4.0 102 2-111 11-117 (190)
234 PF13504 LRR_7: Leucine rich r 92.1 0.091 2E-06 29.1 1.3 16 417-432 2-17 (17)
235 TIGR01243 CDC48 AAA family ATP 92.0 0.86 1.9E-05 57.4 11.4 141 2-164 496-657 (733)
236 PLN00020 ribulose bisphosphate 92.0 1.4 3.1E-05 48.3 11.2 139 2-165 157-333 (413)
237 PRK07276 DNA polymerase III su 91.9 1.9 4E-05 46.6 12.0 66 71-137 103-172 (290)
238 PLN03187 meiotic recombination 91.9 0.63 1.4E-05 51.6 8.7 49 2-51 135-187 (344)
239 TIGR03346 chaperone_ClpB ATP-d 91.7 1.3 2.9E-05 56.5 12.6 76 2-84 604-679 (852)
240 PRK12377 putative replication 91.7 0.53 1.2E-05 49.7 7.5 66 2-84 110-175 (248)
241 COG1223 Predicted ATPase (AAA+ 91.5 1.1 2.3E-05 45.9 8.9 141 2-164 160-319 (368)
242 cd01121 Sms Sms (bacterial rad 91.4 0.44 9.5E-06 53.8 7.1 77 2-83 91-169 (372)
243 PF02562 PhoH: PhoH-like prote 91.4 0.1 2.2E-06 52.7 1.9 100 2-108 28-154 (205)
244 PRK08118 topology modulation p 91.4 0.11 2.5E-06 51.3 2.1 28 1-28 9-37 (167)
245 PRK10865 protein disaggregatio 91.4 1.5 3.3E-05 55.8 12.5 125 2-140 208-354 (857)
246 cd01393 recA_like RecA is a b 91.3 0.9 1.9E-05 48.0 9.1 37 2-40 28-70 (226)
247 PF05673 DUF815: Protein of un 91.3 7.5 0.00016 40.4 14.9 19 2-20 61-79 (249)
248 PRK09361 radB DNA repair and r 91.3 0.83 1.8E-05 48.1 8.7 35 2-39 32-66 (225)
249 PRK07261 topology modulation p 91.3 0.68 1.5E-05 46.1 7.6 28 1-28 8-36 (171)
250 PF13504 LRR_7: Leucine rich r 91.2 0.16 3.5E-06 28.1 1.6 17 1165-1182 1-17 (17)
251 KOG0733 Nuclear AAA ATPase (VC 91.1 1.3 2.8E-05 51.1 10.1 151 2-175 232-411 (802)
252 PRK14722 flhF flagellar biosyn 91.1 0.8 1.7E-05 51.3 8.5 81 2-84 146-227 (374)
253 PRK08699 DNA polymerase III su 91.0 1.1 2.4E-05 49.7 9.5 69 71-139 112-184 (325)
254 PF00448 SRP54: SRP54-type pro 90.9 0.9 2E-05 46.2 8.1 79 2-82 10-93 (196)
255 PRK10865 protein disaggregatio 90.6 1.9 4.1E-05 55.0 12.3 76 2-84 607-682 (857)
256 PRK06835 DNA replication prote 90.6 0.25 5.5E-06 54.6 4.1 93 2-110 192-289 (329)
257 PRK10733 hflB ATP-dependent me 90.6 1.3 2.8E-05 54.6 10.5 140 2-163 194-356 (644)
258 cd01125 repA Hexameric Replica 90.5 1.1 2.5E-05 47.5 8.9 81 1-81 9-120 (239)
259 PHA00729 NTP-binding motif con 90.5 0.76 1.6E-05 47.2 7.0 17 2-18 26-42 (226)
260 KOG0731 AAA+-type ATPase conta 90.4 1.6 3.5E-05 52.7 10.6 146 1-167 352-521 (774)
261 PF13481 AAA_25: AAA domain; P 90.2 1.1 2.4E-05 45.8 8.3 33 2-34 41-81 (193)
262 PRK05541 adenylylsulfate kinas 90.0 0.73 1.6E-05 46.3 6.6 28 1-30 15-42 (176)
263 PF00154 RecA: recA bacterial 89.9 1.4 3.1E-05 48.0 9.0 75 2-83 62-142 (322)
264 COG0464 SpoVK ATPases of the A 89.8 1.4 3E-05 52.9 9.8 142 1-162 284-445 (494)
265 cd01394 radB RadB. The archaea 89.7 1 2.2E-05 47.1 7.7 33 2-36 28-60 (218)
266 PLN03186 DNA repair protein RA 89.7 1 2.3E-05 50.0 7.9 49 2-51 132-184 (342)
267 cd03115 SRP The signal recogni 89.5 1.4 2.9E-05 44.2 8.1 81 1-83 8-93 (173)
268 TIGR02239 recomb_RAD51 DNA rep 89.4 1.2 2.5E-05 49.3 8.1 49 2-51 105-157 (316)
269 cd01120 RecA-like_NTPases RecA 89.3 1.8 4E-05 42.7 8.9 33 2-36 8-40 (165)
270 CHL00095 clpC Clp protease ATP 89.3 0.58 1.3E-05 59.5 6.3 76 2-84 548-623 (821)
271 TIGR02236 recomb_radA DNA repa 89.2 1.7 3.7E-05 48.4 9.3 48 2-50 104-155 (310)
272 TIGR03499 FlhF flagellar biosy 89.1 1.5 3.2E-05 47.8 8.5 78 2-81 203-281 (282)
273 KOG0736 Peroxisome assembly fa 89.0 3 6.6E-05 49.7 11.0 139 2-162 714-877 (953)
274 KOG0473 Leucine-rich repeat pr 89.0 0.017 3.6E-07 57.2 -5.8 80 370-449 41-121 (326)
275 TIGR03877 thermo_KaiC_1 KaiC d 89.0 1.8 4E-05 45.9 8.9 38 2-43 30-67 (237)
276 COG2255 RuvB Holliday junction 88.9 2.9 6.4E-05 43.7 9.6 63 103-166 155-219 (332)
277 PTZ00035 Rad51 protein; Provis 88.6 2 4.4E-05 47.9 9.2 49 2-51 127-179 (337)
278 COG1618 Predicted nucleotide k 88.4 0.5 1.1E-05 44.6 3.6 27 1-28 13-40 (179)
279 PF00006 ATP-synt_ab: ATP synt 88.1 1.7 3.6E-05 44.8 7.6 77 2-82 24-115 (215)
280 PRK12727 flagellar biosynthesi 88.1 1.6 3.5E-05 50.7 8.2 80 2-83 359-439 (559)
281 PRK04301 radA DNA repair and r 88.1 2.2 4.9E-05 47.5 9.3 48 2-50 111-162 (317)
282 TIGR01243 CDC48 AAA family ATP 88.1 3.1 6.7E-05 52.5 11.6 143 2-166 221-383 (733)
283 PRK04328 hypothetical protein; 88.1 1.7 3.7E-05 46.4 8.0 31 2-34 32-62 (249)
284 cd01135 V_A-ATPase_B V/A-type 88.0 2.2 4.7E-05 45.3 8.4 83 2-84 78-178 (276)
285 PRK08533 flagellar accessory p 87.8 2.4 5.3E-05 44.5 8.8 39 2-44 33-71 (230)
286 smart00367 LRR_CC Leucine-rich 87.8 0.31 6.7E-06 30.6 1.3 20 1080-1099 1-20 (26)
287 PRK13849 putative crown gall t 87.8 2.1 4.5E-05 45.0 8.2 39 2-42 11-49 (231)
288 COG1484 DnaC DNA replication p 87.7 1.8 3.9E-05 46.2 7.8 66 2-84 114-179 (254)
289 cd01124 KaiC KaiC is a circadi 87.6 2.1 4.6E-05 43.4 8.2 31 2-34 8-38 (187)
290 PRK11823 DNA repair protein Ra 87.3 1.2 2.5E-05 52.1 6.7 76 2-82 89-166 (446)
291 KOG1969 DNA replication checkp 87.3 1.1 2.4E-05 52.9 6.2 65 1-84 334-399 (877)
292 COG0468 RecA RecA/RadA recombi 87.3 2.7 5.9E-05 44.9 8.8 79 2-82 69-151 (279)
293 PRK12726 flagellar biosynthesi 87.1 3 6.4E-05 46.5 9.1 80 2-83 215-296 (407)
294 PRK05703 flhF flagellar biosyn 87.1 2.1 4.6E-05 49.4 8.6 79 2-82 230-309 (424)
295 TIGR00416 sms DNA repair prote 86.9 1.6 3.5E-05 50.9 7.5 76 2-82 103-180 (454)
296 PRK09519 recA DNA recombinatio 86.4 2.1 4.6E-05 52.6 8.3 74 2-82 69-148 (790)
297 PHA02518 ParA-like protein; Pr 86.3 2.3 4.9E-05 44.3 7.7 38 2-41 10-47 (211)
298 KOG0743 AAA+-type ATPase [Post 86.2 14 0.0003 41.8 13.5 143 1-175 243-414 (457)
299 PRK12723 flagellar biosynthesi 86.2 2.7 5.8E-05 47.7 8.5 80 2-83 183-265 (388)
300 smart00370 LRR Leucine-rich re 86.1 0.67 1.5E-05 29.0 2.2 19 416-434 2-20 (26)
301 smart00369 LRR_TYP Leucine-ric 86.1 0.67 1.5E-05 29.0 2.2 19 416-434 2-20 (26)
302 PRK11889 flhF flagellar biosyn 86.0 3.4 7.5E-05 46.1 8.9 80 2-83 250-331 (436)
303 PRK12724 flagellar biosynthesi 85.9 2.4 5.2E-05 48.0 7.8 76 2-81 232-308 (432)
304 cd00544 CobU Adenosylcobinamid 85.8 2.5 5.4E-05 41.8 7.1 74 2-81 8-82 (169)
305 PF01583 APS_kinase: Adenylyls 85.8 0.98 2.1E-05 43.5 4.1 30 1-32 10-39 (156)
306 TIGR02858 spore_III_AA stage I 85.7 2 4.3E-05 46.1 6.9 105 2-112 120-231 (270)
307 TIGR03878 thermo_KaiC_2 KaiC d 85.7 3.1 6.8E-05 44.7 8.5 32 2-35 45-76 (259)
308 COG4088 Predicted nucleotide k 85.6 1.9 4.2E-05 42.5 5.9 20 1-20 9-28 (261)
309 PRK12597 F0F1 ATP synthase sub 85.5 3.2 7E-05 47.9 8.8 81 2-83 152-248 (461)
310 TIGR00763 lon ATP-dependent pr 85.4 3.5 7.5E-05 52.3 9.9 127 2-140 356-505 (775)
311 KOG0728 26S proteasome regulat 85.2 14 0.00029 37.7 11.7 153 2-175 190-368 (404)
312 PF13207 AAA_17: AAA domain; P 85.0 0.64 1.4E-05 43.2 2.5 17 1-17 7-23 (121)
313 PRK05917 DNA polymerase III su 85.0 8.8 0.00019 41.4 11.2 57 71-127 94-154 (290)
314 KOG0729 26S proteasome regulat 84.9 1.7 3.7E-05 44.3 5.4 62 2-83 220-281 (435)
315 TIGR01040 V-ATPase_V1_B V-type 84.8 3.8 8.3E-05 46.9 8.8 82 2-83 150-258 (466)
316 PRK06067 flagellar accessory p 84.7 3.9 8.5E-05 43.3 8.7 76 2-82 34-130 (234)
317 PF07726 AAA_3: ATPase family 84.5 0.48 1.1E-05 43.3 1.3 23 2-26 8-30 (131)
318 TIGR03575 selen_PSTK_euk L-ser 84.5 2 4.3E-05 47.6 6.3 32 1-33 7-38 (340)
319 TIGR03305 alt_F1F0_F1_bet alte 84.4 3.7 8.1E-05 47.1 8.6 82 2-84 147-244 (449)
320 CHL00206 ycf2 Ycf2; Provisiona 84.4 5.7 0.00012 53.1 11.0 77 61-137 1721-1814(2281)
321 PF07015 VirC1: VirC1 protein; 84.4 3.6 7.8E-05 42.3 7.6 37 2-40 11-47 (231)
322 PRK00771 signal recognition pa 84.3 3 6.5E-05 48.1 7.9 79 1-83 103-186 (437)
323 COG3640 CooC CO dehydrogenase 84.1 3.1 6.6E-05 42.3 6.8 44 2-53 9-52 (255)
324 KOG0991 Replication factor C, 84.0 4 8.7E-05 41.1 7.4 70 1-84 56-125 (333)
325 COG1192 Soj ATPases involved i 84.0 1.2 2.6E-05 48.1 4.4 36 2-38 12-47 (259)
326 PRK14974 cell division protein 83.9 4.3 9.2E-05 45.1 8.6 82 1-84 148-234 (336)
327 KOG0473 Leucine-rich repeat pr 83.9 0.033 7.1E-07 55.3 -6.7 86 389-476 37-123 (326)
328 PRK10867 signal recognition pa 83.8 4.4 9.6E-05 46.7 8.9 50 1-51 108-158 (433)
329 COG3854 SpoIIIAA ncharacterize 83.8 1.9 4E-05 43.4 5.0 100 2-108 146-251 (308)
330 COG0542 clpA ATP-binding subun 83.8 3.3 7.1E-05 50.6 8.2 126 2-140 200-346 (786)
331 KOG1514 Origin recognition com 83.6 21 0.00046 42.6 14.0 168 2-173 431-624 (767)
332 cd02037 MRP-like MRP (Multiple 83.4 3.2 6.9E-05 41.3 6.9 32 2-35 9-40 (169)
333 COG1875 NYN ribonuclease and A 83.4 1.7 3.7E-05 47.0 5.0 35 72-109 351-387 (436)
334 TIGR00708 cobA cob(I)alamin ad 83.3 6.2 0.00013 38.8 8.4 109 2-112 14-142 (173)
335 PF07724 AAA_2: AAA domain (Cd 83.3 0.89 1.9E-05 45.1 2.8 34 2-36 12-45 (171)
336 cd01122 GP4d_helicase GP4d_hel 83.2 5.2 0.00011 43.6 9.1 77 2-82 39-121 (271)
337 TIGR00959 ffh signal recogniti 82.9 5.1 0.00011 46.2 9.0 81 1-82 107-192 (428)
338 TIGR02655 circ_KaiC circadian 82.9 3.2 6.9E-05 49.3 7.7 76 2-82 272-363 (484)
339 COG5635 Predicted NTPase (NACH 82.8 1.6 3.4E-05 55.7 5.4 169 2-175 231-427 (824)
340 KOG0730 AAA+-type ATPase [Post 82.8 6.7 0.00015 46.2 9.7 141 2-164 477-637 (693)
341 KOG3347 Predicted nucleotide k 82.6 1.9 4.2E-05 40.1 4.3 60 2-70 16-75 (176)
342 PF01656 CbiA: CobQ/CobB/MinD/ 82.4 1.7 3.7E-05 44.5 4.7 37 2-40 8-44 (195)
343 cd00046 DEXDc DEAD-like helica 82.1 3.2 7E-05 39.4 6.3 30 2-31 9-38 (144)
344 PRK11034 clpA ATP-dependent Cl 82.0 1.8 3.9E-05 53.8 5.3 73 2-84 497-569 (758)
345 KOG0739 AAA+-type ATPase [Post 82.0 12 0.00026 39.4 10.1 141 2-163 175-334 (439)
346 TIGR00064 ftsY signal recognit 81.9 5.5 0.00012 43.0 8.4 80 1-83 80-165 (272)
347 TIGR01039 atpD ATP synthase, F 81.9 6.1 0.00013 45.4 9.0 82 2-84 152-249 (461)
348 TIGR01425 SRP54_euk signal rec 81.8 5.2 0.00011 45.8 8.4 49 1-51 108-157 (429)
349 PRK14721 flhF flagellar biosyn 81.8 6.5 0.00014 45.0 9.2 78 2-81 200-278 (420)
350 KOG2228 Origin recognition com 81.8 18 0.00038 39.2 11.5 137 2-140 58-219 (408)
351 KOG0727 26S proteasome regulat 81.8 9.9 0.00022 38.7 9.2 118 2-140 198-339 (408)
352 COG0563 Adk Adenylate kinase a 81.7 2 4.4E-05 42.8 4.6 17 2-18 9-25 (178)
353 TIGR01359 UMP_CMP_kin_fam UMP- 81.5 3.2 6.9E-05 42.0 6.2 17 1-17 7-23 (183)
354 COG1157 FliI Flagellar biosynt 81.4 5.1 0.00011 44.6 7.8 77 2-82 172-263 (441)
355 KOG0735 AAA+-type ATPase [Post 81.4 12 0.00027 44.4 11.1 143 2-166 710-872 (952)
356 TIGR03324 alt_F1F0_F1_al alter 81.2 5.4 0.00012 46.3 8.3 79 2-84 171-266 (497)
357 TIGR03574 selen_PSTK L-seryl-t 81.1 2.9 6.3E-05 44.8 6.0 19 1-19 7-25 (249)
358 PF08433 KTI12: Chromatin asso 81.1 1.3 2.8E-05 47.6 3.2 28 1-30 9-36 (270)
359 PRK09280 F0F1 ATP synthase sub 81.0 7.2 0.00016 45.0 9.2 81 2-83 153-249 (463)
360 cd02025 PanK Pantothenate kina 81.0 6.5 0.00014 41.0 8.3 34 2-35 8-41 (220)
361 TIGR01041 ATP_syn_B_arch ATP s 81.0 6.5 0.00014 45.5 8.9 82 2-83 150-249 (458)
362 COG0541 Ffh Signal recognition 80.9 7.2 0.00016 43.8 8.7 49 2-52 109-158 (451)
363 PF13238 AAA_18: AAA domain; P 80.9 1.1 2.5E-05 42.0 2.5 17 1-17 6-22 (129)
364 COG1102 Cmk Cytidylate kinase 80.8 4.6 9.9E-05 38.5 6.1 40 1-53 8-47 (179)
365 PF07728 AAA_5: AAA domain (dy 80.8 2.9 6.3E-05 39.9 5.3 70 2-84 8-77 (139)
366 PRK04196 V-type ATP synthase s 80.4 5.4 0.00012 46.3 8.1 82 2-83 152-251 (460)
367 PTZ00185 ATPase alpha subunit; 80.3 7.7 0.00017 44.9 8.9 82 2-84 198-301 (574)
368 cd01134 V_A-ATPase_A V/A-type 80.2 7.9 0.00017 42.6 8.7 40 2-45 166-206 (369)
369 TIGR03881 KaiC_arch_4 KaiC dom 80.2 9.9 0.00022 40.1 9.6 31 2-34 29-59 (229)
370 PRK08233 hypothetical protein; 80.1 4.4 9.5E-05 40.9 6.7 18 1-18 11-28 (182)
371 COG0003 ArsA Predicted ATPase 79.7 2.4 5.3E-05 46.5 4.8 41 1-43 10-50 (322)
372 CHL00060 atpB ATP synthase CF1 79.7 4.9 0.00011 46.5 7.3 44 2-46 170-214 (494)
373 PHA02244 ATPase-like protein 79.5 3.8 8.2E-05 45.5 6.1 17 2-18 128-144 (383)
374 smart00370 LRR Leucine-rich re 79.5 1.5 3.2E-05 27.5 1.8 20 370-389 1-20 (26)
375 smart00369 LRR_TYP Leucine-ric 79.5 1.5 3.2E-05 27.5 1.8 20 370-389 1-20 (26)
376 PRK10787 DNA-binding ATP-depen 79.4 7.8 0.00017 48.7 9.6 125 2-140 358-506 (784)
377 COG0542 clpA ATP-binding subun 79.2 1.8 3.9E-05 52.7 3.9 76 2-84 530-605 (786)
378 cd01131 PilT Pilus retraction 79.2 2.2 4.7E-05 43.8 4.0 102 2-112 10-111 (198)
379 smart00367 LRR_CC Leucine-rich 78.9 1.1 2.4E-05 28.1 1.1 17 1164-1180 1-17 (26)
380 PRK08972 fliI flagellum-specif 78.5 4.3 9.3E-05 46.3 6.3 79 2-84 171-264 (444)
381 TIGR01650 PD_CobS cobaltochela 78.5 15 0.00033 40.3 10.2 17 2-18 73-89 (327)
382 PTZ00088 adenylate kinase 1; P 78.4 2.5 5.5E-05 44.1 4.3 18 1-18 14-31 (229)
383 KOG0740 AAA+-type ATPase [Post 78.3 17 0.00037 41.3 10.8 62 2-83 195-256 (428)
384 PRK14723 flhF flagellar biosyn 78.2 7.4 0.00016 47.9 8.6 79 2-82 194-273 (767)
385 COG2607 Predicted ATPase (AAA+ 78.1 7.7 0.00017 39.6 7.1 19 2-20 94-112 (287)
386 PRK06995 flhF flagellar biosyn 78.0 8.2 0.00018 45.0 8.5 52 2-53 265-317 (484)
387 COG1419 FlhF Flagellar GTP-bin 78.0 11 0.00023 42.3 8.9 79 2-82 212-291 (407)
388 TIGR03880 KaiC_arch_3 KaiC dom 77.9 8.3 0.00018 40.5 8.1 31 2-34 25-55 (224)
389 PRK00889 adenylylsulfate kinas 77.8 6.4 0.00014 39.4 6.9 29 1-31 12-40 (175)
390 PF06745 KaiC: KaiC; InterPro 77.7 4.2 9.1E-05 42.8 5.8 33 2-35 28-60 (226)
391 PF02374 ArsA_ATPase: Anion-tr 77.6 2.9 6.4E-05 46.0 4.7 38 2-41 10-47 (305)
392 COG4608 AppF ABC-type oligopep 77.5 6 0.00013 41.6 6.5 113 2-118 48-178 (268)
393 COG0529 CysC Adenylylsulfate k 77.5 5.8 0.00013 38.5 5.8 20 1-20 31-50 (197)
394 COG3598 RepA RecA-family ATPas 77.4 6.1 0.00013 42.1 6.5 51 2-52 98-157 (402)
395 PRK08927 fliI flagellum-specif 77.4 8.6 0.00019 44.2 8.3 78 2-83 167-259 (442)
396 cd01132 F1_ATPase_alpha F1 ATP 77.1 6.8 0.00015 41.7 6.9 79 2-84 78-173 (274)
397 CHL00059 atpA ATP synthase CF1 76.6 8.9 0.00019 44.4 8.2 80 2-84 150-245 (485)
398 PRK13768 GTPase; Provisional 76.5 9.2 0.0002 40.9 8.0 30 1-32 10-39 (253)
399 PRK12678 transcription termina 76.5 7.1 0.00015 45.8 7.3 82 2-84 425-515 (672)
400 PRK03839 putative kinase; Prov 76.4 1.8 3.8E-05 43.7 2.4 18 1-18 8-25 (180)
401 PRK00625 shikimate kinase; Pro 76.1 1.9 4E-05 42.9 2.4 18 1-18 8-25 (173)
402 PRK06217 hypothetical protein; 75.9 8.1 0.00018 39.0 7.1 18 1-18 9-26 (183)
403 cd03228 ABCC_MRP_Like The MRP 75.8 5.7 0.00012 39.6 5.9 25 2-29 37-61 (171)
404 cd02042 ParA ParA and ParB of 75.5 3.8 8.2E-05 36.7 4.1 18 2-19 9-26 (104)
405 PRK08149 ATP synthase SpaL; Va 75.4 8.3 0.00018 44.2 7.5 79 2-84 160-253 (428)
406 COG3910 Predicted ATPase [Gene 75.3 14 0.0003 36.4 7.7 69 71-140 145-224 (233)
407 PRK09099 type III secretion sy 75.0 7.1 0.00015 45.0 7.0 80 2-84 172-265 (441)
408 TIGR02655 circ_KaiC circadian 74.8 9.4 0.0002 45.4 8.2 30 2-33 30-60 (484)
409 COG1428 Deoxynucleoside kinase 74.7 1.9 4.2E-05 43.1 2.1 18 1-18 12-29 (216)
410 PRK13886 conjugal transfer pro 74.7 7.5 0.00016 40.7 6.4 30 2-33 12-41 (241)
411 PRK06731 flhF flagellar biosyn 74.7 16 0.00035 39.2 9.1 81 2-84 84-166 (270)
412 COG3265 GntK Gluconate kinase 74.6 8.2 0.00018 36.2 5.8 18 2-19 4-21 (161)
413 cd02040 NifH NifH gene encodes 74.6 3.8 8.3E-05 44.6 4.7 35 2-38 10-44 (270)
414 PRK06002 fliI flagellum-specif 74.5 8.1 0.00018 44.4 7.2 79 2-83 174-265 (450)
415 KOG0726 26S proteasome regulat 74.5 6.2 0.00013 41.2 5.6 62 2-83 228-289 (440)
416 cd02019 NK Nucleoside/nucleoti 74.3 2.4 5.2E-05 34.5 2.2 16 2-17 8-23 (69)
417 cd02027 APSK Adenosine 5'-phos 74.2 18 0.0004 34.9 8.7 18 1-18 7-24 (149)
418 KOG0734 AAA+-type ATPase conta 74.1 4.6 0.0001 46.0 4.9 63 2-84 346-408 (752)
419 COG2884 FtsE Predicted ATPase 73.8 12 0.00026 36.9 7.0 52 65-117 149-204 (223)
420 PF03029 ATP_bind_1: Conserved 73.7 4 8.6E-05 43.1 4.3 29 1-31 4-32 (238)
421 PF00485 PRK: Phosphoribulokin 73.7 15 0.00032 37.5 8.4 76 2-78 8-89 (194)
422 cd02021 GntK Gluconate kinase 73.6 13 0.00028 36.0 7.7 17 1-17 7-23 (150)
423 cd03247 ABCC_cytochrome_bd The 73.4 7.9 0.00017 38.8 6.3 17 2-18 37-53 (178)
424 KOG2035 Replication factor C, 73.3 46 0.00099 35.1 11.3 177 2-191 43-260 (351)
425 PRK09281 F0F1 ATP synthase sub 73.3 12 0.00025 44.1 8.2 80 2-84 171-266 (502)
426 TIGR00962 atpA proton transloc 73.2 12 0.00025 44.1 8.2 79 2-84 170-265 (501)
427 PRK06936 type III secretion sy 73.2 9.9 0.00021 43.6 7.4 79 2-84 171-264 (439)
428 TIGR03496 FliI_clade1 flagella 73.1 7.3 0.00016 44.6 6.4 78 2-83 146-238 (411)
429 PRK10037 cell division protein 73.1 4.2 9E-05 43.6 4.4 31 2-34 11-41 (250)
430 COG0194 Gmk Guanylate kinase [ 73.1 10 0.00022 37.3 6.5 16 2-17 13-28 (191)
431 cd00984 DnaB_C DnaB helicase C 73.1 17 0.00036 38.7 9.1 41 2-45 22-62 (242)
432 TIGR01313 therm_gnt_kin carboh 73.0 13 0.00027 36.7 7.5 17 1-17 6-22 (163)
433 PRK09302 circadian clock prote 72.9 11 0.00023 45.4 8.3 31 2-34 282-312 (509)
434 PRK09270 nucleoside triphospha 72.8 12 0.00025 39.5 7.6 19 2-20 42-60 (229)
435 PF06564 YhjQ: YhjQ protein; 72.8 4 8.7E-05 42.6 3.9 30 2-33 11-40 (243)
436 cd03223 ABCD_peroxisomal_ALDP 72.8 12 0.00027 36.9 7.4 106 2-113 36-151 (166)
437 PRK05800 cobU adenosylcobinami 72.7 6.6 0.00014 38.9 5.3 73 2-81 10-85 (170)
438 PRK13343 F0F1 ATP synthase sub 72.7 9.8 0.00021 44.4 7.4 79 2-84 171-266 (502)
439 cd03216 ABC_Carb_Monos_I This 72.5 3.8 8.2E-05 40.4 3.6 107 2-114 35-146 (163)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 72.5 4.8 0.00011 38.7 4.3 94 2-114 35-131 (144)
441 TIGR03498 FliI_clade3 flagella 72.5 7.7 0.00017 44.5 6.4 79 2-83 149-241 (418)
442 PRK06793 fliI flagellum-specif 72.4 7.7 0.00017 44.5 6.4 80 2-84 165-258 (432)
443 cd02036 MinD Bacterial cell di 72.4 4.3 9.2E-05 40.8 4.1 31 1-33 8-38 (179)
444 PF00910 RNA_helicase: RNA hel 72.1 2.8 6E-05 37.8 2.3 19 2-20 7-25 (107)
445 PF02367 UPF0079: Uncharacteri 71.9 2.7 5.8E-05 38.7 2.1 17 3-19 25-41 (123)
446 PRK13185 chlL protochlorophyll 71.8 4.7 0.0001 43.8 4.5 35 2-38 11-45 (270)
447 PRK14532 adenylate kinase; Pro 71.5 12 0.00025 38.1 7.0 17 1-17 8-24 (188)
448 PF03796 DnaB_C: DnaB-like hel 71.5 9 0.00019 41.3 6.5 41 2-45 28-68 (259)
449 TIGR01287 nifH nitrogenase iro 71.4 4.7 0.0001 44.0 4.4 34 2-37 9-42 (275)
450 PF13671 AAA_33: AAA domain; P 71.4 2.8 6.1E-05 40.2 2.4 17 1-17 7-23 (143)
451 PRK05922 type III secretion sy 71.4 14 0.0003 42.5 8.0 79 2-84 166-259 (434)
452 cd02032 Bchl_like This family 71.3 4.6 0.0001 43.8 4.3 33 2-36 9-41 (267)
453 cd03214 ABC_Iron-Siderophores_ 71.3 9.9 0.00022 38.2 6.4 109 2-114 34-162 (180)
454 TIGR02902 spore_lonB ATP-depen 71.2 11 0.00023 45.4 7.7 41 100-140 233-276 (531)
455 PRK02118 V-type ATP synthase s 71.1 15 0.00032 42.1 8.2 79 2-84 149-243 (436)
456 PRK13231 nitrogenase reductase 71.0 3.4 7.3E-05 44.8 3.1 33 2-37 11-43 (264)
457 COG0467 RAD55 RecA-superfamily 70.5 4.7 0.0001 43.5 4.1 31 2-34 32-62 (260)
458 PRK05973 replicative DNA helic 70.5 5.1 0.00011 41.9 4.1 31 2-34 73-103 (237)
459 PF03266 NTPase_1: NTPase; In 70.5 4.2 9.2E-05 40.2 3.4 18 2-19 8-25 (168)
460 cd02029 PRK_like Phosphoribulo 70.5 15 0.00032 39.0 7.3 70 2-73 8-85 (277)
461 TIGR03497 FliI_clade2 flagella 70.1 11 0.00024 43.2 7.1 79 2-83 146-238 (413)
462 PTZ00301 uridine kinase; Provi 69.9 7.2 0.00016 40.2 5.0 17 2-18 12-28 (210)
463 PRK13230 nitrogenase reductase 69.9 5.2 0.00011 43.7 4.4 34 2-37 10-43 (279)
464 KOG0744 AAA+-type ATPase [Post 69.8 11 0.00023 40.4 6.1 20 1-20 185-204 (423)
465 KOG1051 Chaperone HSP104 and r 69.7 8.6 0.00019 47.9 6.3 73 2-84 600-672 (898)
466 TIGR03371 cellulose_yhjQ cellu 69.6 6.3 0.00014 42.2 4.8 32 2-35 11-42 (246)
467 COG0396 sufC Cysteine desulfur 69.6 11 0.00024 38.4 6.0 55 62-119 153-213 (251)
468 PRK06762 hypothetical protein; 69.6 3.2 7E-05 41.1 2.4 17 1-17 10-26 (166)
469 cd01136 ATPase_flagellum-secre 69.5 12 0.00027 41.2 7.0 78 2-83 78-170 (326)
470 TIGR01281 DPOR_bchL light-inde 69.2 5.5 0.00012 43.3 4.3 34 2-37 9-42 (268)
471 PRK14529 adenylate kinase; Pro 69.1 11 0.00024 39.1 6.1 79 1-84 8-88 (223)
472 PRK05986 cob(I)alamin adenolsy 69.0 33 0.00072 34.4 9.1 109 2-112 31-160 (191)
473 KOG0079 GTP-binding protein H- 68.4 2.2 4.7E-05 39.2 0.8 15 2-16 17-31 (198)
474 KOG1532 GTPase XAB1, interacts 68.1 4.4 9.5E-05 42.0 2.9 27 1-27 27-53 (366)
475 COG0125 Tmk Thymidylate kinase 68.1 9.9 0.00022 38.9 5.5 42 2-45 12-53 (208)
476 PRK13947 shikimate kinase; Pro 68.0 3.6 7.8E-05 41.0 2.4 18 1-18 9-26 (171)
477 COG0466 Lon ATP-dependent Lon 67.8 25 0.00053 42.3 9.1 125 2-140 359-508 (782)
478 PRK07594 type III secretion sy 67.8 9.7 0.00021 43.7 5.9 78 2-83 164-256 (433)
479 KOG3354 Gluconate kinase [Carb 67.8 14 0.00029 35.0 5.6 18 2-19 21-38 (191)
480 PRK05439 pantothenate kinase; 67.7 20 0.00043 39.3 8.0 70 2-73 95-166 (311)
481 PRK10463 hydrogenase nickel in 67.7 28 0.00061 37.6 9.0 76 2-83 113-195 (290)
482 KOG2004 Mitochondrial ATP-depe 67.7 11 0.00025 44.8 6.4 125 2-140 447-596 (906)
483 PRK13235 nifH nitrogenase redu 67.4 6.1 0.00013 43.0 4.2 33 2-36 10-42 (274)
484 cd03238 ABC_UvrA The excision 67.3 17 0.00038 36.2 7.0 58 64-124 98-161 (176)
485 PRK08472 fliI flagellum-specif 67.2 8.7 0.00019 44.1 5.4 79 2-84 166-258 (434)
486 COG0703 AroK Shikimate kinase 67.1 3.8 8.3E-05 40.0 2.2 20 1-20 10-29 (172)
487 PRK00131 aroK shikimate kinase 67.1 3.8 8.3E-05 41.0 2.4 18 1-18 12-29 (175)
488 cd02034 CooC The accessory pro 66.7 7.6 0.00017 35.5 4.0 31 1-33 7-37 (116)
489 PRK06820 type III secretion sy 66.6 19 0.00041 41.5 8.0 29 2-34 172-200 (440)
490 PF13245 AAA_19: Part of AAA d 66.6 11 0.00024 31.3 4.6 29 2-30 19-49 (76)
491 PF12775 AAA_7: P-loop contain 66.6 1.9 4.1E-05 46.5 0.1 70 2-84 42-112 (272)
492 TIGR01969 minD_arch cell divis 66.4 6.2 0.00014 42.3 4.0 30 2-33 10-39 (251)
493 COG2842 Uncharacterized ATPase 66.3 12 0.00026 39.9 5.7 76 1-84 102-177 (297)
494 cd01983 Fer4_NifH The Fer4_Nif 66.2 4.8 0.00011 35.2 2.7 18 2-19 8-25 (99)
495 PRK05688 fliI flagellum-specif 65.9 16 0.00035 42.1 7.2 79 2-84 177-270 (451)
496 COG0572 Udk Uridine kinase [Nu 65.5 10 0.00022 38.7 4.8 18 2-19 17-34 (218)
497 PRK04192 V-type ATP synthase s 65.5 21 0.00047 42.3 8.2 41 2-46 236-277 (586)
498 PRK10646 ADP-binding protein; 65.4 4 8.6E-05 39.2 1.9 17 3-19 38-54 (153)
499 COG1158 Rho Transcription term 65.4 19 0.00042 38.7 6.9 82 2-84 182-272 (422)
500 PRK07196 fliI flagellum-specif 65.3 14 0.0003 42.6 6.5 17 2-18 164-180 (434)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-66 Score=622.22 Aligned_cols=470 Identities=32% Similarity=0.535 Sum_probs=385.3
Q ss_pred CCCccHHHHHHHHHHHhh-hccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc---chHHHHHHHHHHHhcCCeEEE
Q 000869 1 MGGIGKTTLVKEVARKAR-KDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE---TESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
|||+||||||+++.++.. ++.+||.++||.+++.++...++++|+..++...... ...+.+..+.+.+. ++|++|
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfll 265 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLL 265 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEE
Confidence 899999999999999998 8999999999999999999999999999998754433 23456667777775 999999
Q ss_pred EEeCCCCcccchhhccCCCCCCCCcEEEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCC--CCChhhHHHH
Q 000869 77 ILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDD--VENRELKSTA 153 (1247)
Q Consensus 77 vlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~--~~~~~~~~~~ 153 (1247)
|+||||+..+|+.++.+++....||||++|||+..|+.. ++....++++.|+.+|||.+|.+.++.. ...+.+++.|
T Consensus 266 vLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la 345 (889)
T KOG4658|consen 266 VLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA 345 (889)
T ss_pred EEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence 999999999999999999999899999999999999997 7888899999999999999999999643 2334589999
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHHhccCCCC
Q 000869 154 TEVAKACKGLPIALTTIARALRNK-SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFLLCSLMGN 232 (1247)
Q Consensus 154 ~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~a~fp~ 232 (1247)
++|+++|+|+|+|+.++|+.++.+ +..+|+++.+.+......+++++.+.+++++++||+.||++ +|.||+|||.||+
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPE 424 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPE 424 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence 999999999999999999999999 88899999999988867677778889999999999999976 9999999999998
Q ss_pred C--cChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeeccC---CCCceeccHHHHHHHHHhhh-----ccc
Q 000869 233 E--IATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLGGD---NNEKLSMHDVVRAVAISIAC-----RDQ 302 (1247)
Q Consensus 233 ~--~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~h~lv~~~~~~~~~-----~e~ 302 (1247)
| |.++.++.+|+|+||+++....+.+.+.+.+++++|++++++.... ...+|+|||+||++|.++++ .|.
T Consensus 425 D~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 425 DYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc
Confidence 6 9999999999999999886666777788888899999999998764 34689999999999999999 666
Q ss_pred cceeecCccccCCCChhhcccceEEEccCCccccccCcCCCCCccEEEccCCCC-ccccccchhhhcCCCCCcEEEccCC
Q 000869 303 NALVVRNEEVWEWPDEDALRKCYAISIRDSSIHELLEGLECPQLEFLYMDSNGS-SVEINVPEKFFTGMKKLKVVDFCRM 381 (1247)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~-~~~~~l~~~~~~~l~~Lr~L~Ls~~ 381 (1247)
.++ ..+......|+...+..+|++++.++.+..++....+++|++|.+.+|.. .. .++..+|..|++||+|||++|
T Consensus 505 ~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 505 QIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred eEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCC
Confidence 333 22334555676677889999999999999999999999999999999973 22 458888999999999999975
Q ss_pred -CCccCCcccccCCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhh
Q 000869 382 -QFFSLPPSIDHLLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVI 460 (1247)
Q Consensus 382 -~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~ 460 (1247)
.+.++|++|+.|. |||||+++++.+..+|.++++|..|.+|++..+..+..+ ++.+
T Consensus 582 ~~l~~LP~~I~~Li----------------------~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~ 638 (889)
T KOG4658|consen 582 SSLSKLPSSIGELV----------------------HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGIL 638 (889)
T ss_pred CccCcCChHHhhhh----------------------hhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchh
Confidence 4557777665554 455555555666667777777777777777666444444 4545
Q ss_pred cCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEe
Q 000869 461 SSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVH 507 (1247)
Q Consensus 461 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 507 (1247)
..|.+||+|.+..... ......+.++..+.+|+.+...
T Consensus 639 ~~L~~Lr~L~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSAL---------SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhcccccEEEeecccc---------ccchhhHHhhhcccchhhheee
Confidence 5577777777654421 1223344555555666655553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.1e-55 Score=560.98 Aligned_cols=659 Identities=21% Similarity=0.268 Sum_probs=415.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcC---Ccc-----------C-HHHHHHHHHHHhCCCccccchHHHHHHHH
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVS---QTI-----------D-IKKIQQAIAEKLGLVLQEETESSRASRLH 65 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~---~~~-----------~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 65 (1247)
|||+||||||+++|++... .|++.+|++.. ... . ...++++++..+...... .......++
T Consensus 215 ~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~ 290 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYHLGAME 290 (1153)
T ss_pred CCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccCCHHHHH
Confidence 7999999999999998764 49998887531 100 0 123444444443211110 011123455
Q ss_pred HHHhcCCeEEEEEeCCCCcccchhhccCCCCCCCCcEEEEecCChhhhhhcCCcceEEcCCCCHHHHHHHHHHHhC-CCC
Q 000869 66 EQLKREEKILIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSMGSEKNFLVDILKEEEAWRLFKLMAG-DDV 144 (1247)
Q Consensus 66 ~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~-~~~ 144 (1247)
+++. ++|+||||||||+.++|+.+.....+.+.|++||||||++.++...+....|+++.+++++|+++|.++|+ ...
T Consensus 291 ~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~ 369 (1153)
T PLN03210 291 ERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS 369 (1153)
T ss_pred HHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 6665 89999999999999999998777777789999999999999988767778999999999999999999995 333
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHH
Q 000869 145 ENRELKSTATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIF 224 (1247)
Q Consensus 145 ~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~ 224 (1247)
+..+..+++.+|+++|+|+|||++++|++|++++..+|++++++++.. .+.++..+|++||+.|++++.|.||
T Consensus 370 ~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~-------~~~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 370 PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG-------LDGKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------ccHHHHHHHHHhhhccCccchhhhh
Confidence 455678899999999999999999999999999999999999998753 2457999999999999864369999
Q ss_pred HhccCCCCCcChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeeccCCCCceeccHHHHHHHHHhhhccccc
Q 000869 225 LLCSLMGNEIATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLGGDNNEKLSMHDVVRAVAISIACRDQNA 304 (1247)
Q Consensus 225 ~~~a~fp~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~h~lv~~~~~~~~~~e~~~ 304 (1247)
+++|+|+.+...+.+ ..|.+.+.... ...++.|++++|++.. .+.|.|||++|+||++++.++...
T Consensus 443 l~ia~ff~~~~~~~v-~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~ 508 (1153)
T PLN03210 443 RHIACLFNGEKVNDI-KLLLANSDLDV-----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNE 508 (1153)
T ss_pred heehhhcCCCCHHHH-HHHHHhcCCCc-----------hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCC
Confidence 999999988777654 55555543321 1238889999999764 467999999999999998766421
Q ss_pred eeecCccccCC-------CChhhcccceEEEccCCccccccC----cCCCCCccEEEccCCCCc----cccccchhhhcC
Q 000869 305 LVVRNEEVWEW-------PDEDALRKCYAISIRDSSIHELLE----GLECPQLEFLYMDSNGSS----VEINVPEKFFTG 369 (1247)
Q Consensus 305 ~~~~~~~~~~~-------~~~~~~~~~~~l~l~~~~i~~~~~----~~~~~~L~~L~l~~n~~~----~~~~l~~~~~~~ 369 (1247)
. .+....+.. ......++++.+++..+.+.++.- ..++++|+.|.+..+... ....+|.++..-
T Consensus 509 ~-~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 509 P-GEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred C-CcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 1 011111110 111123455666665554443211 125566666665443211 011234433222
Q ss_pred CCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEEccCC-CCCcCchhhcCCCCCcEEecc
Q 000869 370 MKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILSFSGS-GIVKLPEELGQLTKLRHLDLS 447 (1247)
Q Consensus 370 l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~ 447 (1247)
..+||+|++.++.+..+|..+ ...+|+.|++.+|.+..+ ..+..+++|++|+|+++ .+..+|. ++.+++|++|+++
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 234666666666666666554 345666666666655554 44555666666666554 3445552 5555666666666
Q ss_pred CCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceee
Q 000869 448 NCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFK 527 (1247)
Q Consensus 448 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 527 (1247)
+|..+..+| ..++++.+|+.|++++|... ...+..+ ++++|+.|+++++.
T Consensus 666 ~c~~L~~lp-~si~~L~~L~~L~L~~c~~L-----------~~Lp~~i-~l~sL~~L~Lsgc~----------------- 715 (1153)
T PLN03210 666 DCSSLVELP-SSIQYLNKLEDLDMSRCENL-----------EILPTGI-NLKSLYRLNLSGCS----------------- 715 (1153)
T ss_pred CCCCccccc-hhhhccCCCCEEeCCCCCCc-----------CccCCcC-CCCCCCEEeCCCCC-----------------
Confidence 655555553 23555666666665554322 0111111 34444444443321
Q ss_pred EEecCccccCCCCcCccccccccCCcccccccccceeeeeccCcccccccccccccceeEEeeccccCcchhhhcccccC
Q 000869 528 ISVGEAAFLPFGATSNDACFRLSWPLFMINDSETLRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEG 607 (1247)
Q Consensus 528 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~ 607 (1247)
...... ..
T Consensus 716 -------------------------------------------------------------------~L~~~p-----~~ 723 (1153)
T PLN03210 716 -------------------------------------------------------------------RLKSFP-----DI 723 (1153)
T ss_pred -------------------------------------------------------------------Cccccc-----cc
Confidence 111000 00
Q ss_pred cCCCcEEEeecCCCceeeccCCCcCccCCcccccceeccccccccccc----ccCccccccccccceEEEeccCCCcccc
Q 000869 608 FSQLKHLHVQNNPDFMCIVDSMERVPLHDAFPLLESLNLYNLMKLERI----CQDRLSVQSFNELKTIRVEHCGQLSNIF 683 (1247)
Q Consensus 608 ~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 683 (1247)
.++|+.|.+.++. +..+ +....+++|++|.+.++....-+ ..........++|+.|++.+|+.+..+|
T Consensus 724 ~~nL~~L~L~~n~-i~~l-------P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 724 STNISWLDLDETA-IEEF-------PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred cCCcCeeecCCCc-cccc-------cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 1233333333322 1111 11112334444444332211000 0000011234678888888888777765
Q ss_pred chHHhhhcCcccEEeeccCccHHHHHhcCCCcccccccccccCccceEecCCCCCccccchhhhhhhccccccccccccc
Q 000869 684 LLSAAKCLPRLETIAVINCRNIQEIFAVGGGDVVIDHQKIEFGQLRTLCLGNLPVLRSFCREVEKNRQAQGLQETCYNEI 763 (1247)
Q Consensus 684 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 763 (1247)
.. ..++++|+.|++++|..++.++... .+++|+.|++++|..+..++.
T Consensus 796 ~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-----------~L~sL~~L~Ls~c~~L~~~p~------------------- 843 (1153)
T PLN03210 796 SS--IQNLHKLEHLEIENCINLETLPTGI-----------NLESLESLDLSGCSRLRTFPD------------------- 843 (1153)
T ss_pred hh--hhCCCCCCEEECCCCCCcCeeCCCC-----------CccccCEEECCCCCccccccc-------------------
Confidence 43 5678888888888888877665321 478899999999988876643
Q ss_pred cccccccCCCccccccccccCCccceecccccccccccccccccccCccccccEEEEccCcccccccchhHHhhhcccCe
Q 000869 764 SRLKDKLDTSSPLLNEKVVFPSLEALDLRQINVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASMLRSFEHLQH 843 (1247)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~ 843 (1247)
..++|+.|+++++.+..+.. .+..+++|+.|++.+|++++.+++ ....+++|+.
T Consensus 844 ------------------~~~nL~~L~Ls~n~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~ 897 (1153)
T PLN03210 844 ------------------ISTNISDLNLSRTGIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLET 897 (1153)
T ss_pred ------------------cccccCEeECCCCCCccChH------HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCe
Confidence 14678889998887776532 123678899999999999988744 3467888899
Q ss_pred eeeccccccceee
Q 000869 844 LEIACCERLQEII 856 (1247)
Q Consensus 844 L~l~~c~~l~~i~ 856 (1247)
|++++|.+++.+.
T Consensus 898 L~l~~C~~L~~~~ 910 (1153)
T PLN03210 898 VDFSDCGALTEAS 910 (1153)
T ss_pred eecCCCccccccc
Confidence 9999998886543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.2e-34 Score=317.60 Aligned_cols=248 Identities=33% Similarity=0.549 Sum_probs=198.1
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc----ccchHHHHHHHHHHHhcCCeEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ----EETESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
|||+||||||++++++...++.|++++|++++...+..+++++|+.+++.... ..+.......+.+.+. ++++||
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~Ll 105 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLL 105 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc-ccccee
Confidence 79999999999999997777889999999999998889999999999988743 2344556677777766 779999
Q ss_pred EEeCCCCcccchhhccCCCCCCCCcEEEEecCChhhhhhcCC-cceEEcCCCCHHHHHHHHHHHhCCCC--CChhhHHHH
Q 000869 77 ILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSMGS-EKNFLVDILKEEEAWRLFKLMAGDDV--ENRELKSTA 153 (1247)
Q Consensus 77 vlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~--~~~~~~~~~ 153 (1247)
||||||+...|+.+...++....|++||||||+..++..... ...+++++|+.+||+++|.+.++... .....++.+
T Consensus 106 VlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 185 (287)
T PF00931_consen 106 VLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLA 185 (287)
T ss_dssp EEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHH
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998887777777789999999999998775544 67999999999999999999996433 334556789
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHHhccCCCC
Q 000869 154 TEVAKACKGLPIALTTIARALRNK-SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFLLCSLMGN 232 (1247)
Q Consensus 154 ~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~a~fp~ 232 (1247)
.+|+++|+|+|+||.++|++++.+ +..+|..+++++...... ..+....++.++.+||+.|+++ +|+||.+||+||.
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~ 263 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPE 263 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceechhcCCcc-HHHHHhhCcCCCC
Confidence 999999999999999999999665 788999999887755432 2335678999999999999998 8999999999998
Q ss_pred C--cChhHHHHHHHhcCcccc
Q 000869 233 E--IATSDLFKYCMCLGIFKG 251 (1247)
Q Consensus 233 ~--~~~~~l~~~w~~~g~~~~ 251 (1247)
+ |+.+.++++|+++|++..
T Consensus 264 ~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 264 GVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp TS-EEHHHHHHHHTT-HHTC-
T ss_pred CceECHHHHHHHHHHCCCCcc
Confidence 6 889999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=340.24 Aligned_cols=513 Identities=18% Similarity=0.156 Sum_probs=306.7
Q ss_pred ccceEEEccCCccccccC--cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc-cCCcccccCCCCcE
Q 000869 322 RKCYAISIRDSSIHELLE--GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF-SLPPSIDHLLNLQT 398 (1247)
Q Consensus 322 ~~~~~l~l~~~~i~~~~~--~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~l~~l~~L~~ 398 (1247)
.+++.+++.++.+..... ...+++|++|++++|.+...+ |.++|..+++|++|+|++|.+. .+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i--p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI--PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC--ChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 478889998887765443 237899999999999887655 8888889999999999999887 4454 56889999
Q ss_pred EEccCcCCCC--cccccCCCCCcEEEccCCCCC-cCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCc
Q 000869 399 LCLDQCILGD--VAIIGKLKNLEILSFSGSGIV-KLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCF 475 (1247)
Q Consensus 399 L~L~~~~l~~--~~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~ 475 (1247)
|+|++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++| .+....|..++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCc
Confidence 9999998864 267899999999999999775 78888999999999999998 5555556678999999999998886
Q ss_pred cccccCCCCcccccccccccCCCCCCcEEEEeecCCCC-CCchh-hccccceeeEEecCccccCCCCcCccccccccCCc
Q 000869 476 VEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNI-LPEGF-FARKLERFKISVGEAAFLPFGATSNDACFRLSWPL 553 (1247)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~-~~~~L~~l~i~~~~l~~~~~~~~~~~~~~~~~~~~ 553 (1247)
+. ...+..++.+++|++|++++|.... +|..+ .+++|+.|.++.+.+
T Consensus 224 l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-------------------- 272 (968)
T PLN00113 224 LS-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-------------------- 272 (968)
T ss_pred cC-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee--------------------
Confidence 65 3455678888999999988776542 33222 333344333332221
Q ss_pred ccccccccceeeeeccCcccccccccccccceeEEeeccccCcchhhhcccccCcCCCcEEEeecCCCceeeccCCCcCc
Q 000869 554 FMINDSETLRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKHLHVQNNPDFMCIVDSMERVP 633 (1247)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~ 633 (1247)
....+..+.++++|+.|+++++.........+ ..+++|+.|++.+|.....+
T Consensus 273 ------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~-------- 324 (968)
T PLN00113 273 ------------------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKI-------- 324 (968)
T ss_pred ------------------eccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcC--------
Confidence 11112234455566666666543221111111 23455555555554322111
Q ss_pred cCCcccccceecccccccccccccCccccccccccceEEEeccCCCccccchHHhhhcCcccEEeeccCccHHHHHhcCC
Q 000869 634 LHDAFPLLESLNLYNLMKLERICQDRLSVQSFNELKTIRVEHCGQLSNIFLLSAAKCLPRLETIAVINCRNIQEIFAVGG 713 (1247)
Q Consensus 634 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 713 (1247)
+.....+++|+.|++.+|.-...++. ....+++|+.|+++++.-...++
T Consensus 325 -------------------------~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p---- 373 (968)
T PLN00113 325 -------------------------PVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIP---- 373 (968)
T ss_pred -------------------------ChhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCC----
Confidence 11123345555555555432222221 12334555555555543211111
Q ss_pred CcccccccccccCccceEecCCCCCccccchhhhhhhccccccccccccccccccccCCCccccccccccCCccceeccc
Q 000869 714 GDVVIDHQKIEFGQLRTLCLGNLPVLRSFCREVEKNRQAQGLQETCYNEISRLKDKLDTSSPLLNEKVVFPSLEALDLRQ 793 (1247)
Q Consensus 714 ~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 793 (1247)
.....+++|+.|.+.+++-...++..+. .+++|+.|++++
T Consensus 374 ------~~~~~~~~L~~L~l~~n~l~~~~p~~~~----------------------------------~~~~L~~L~L~~ 413 (968)
T PLN00113 374 ------EGLCSSGNLFKLILFSNSLEGEIPKSLG----------------------------------ACRSLRRVRLQD 413 (968)
T ss_pred ------hhHhCcCCCCEEECcCCEecccCCHHHh----------------------------------CCCCCCEEECcC
Confidence 0111345566666655543322222211 256666666666
Q ss_pred ccccccccccccccccCccccccEEEEccCcccccccchhHHhhhcccCeeeeccccccceeeccCCCCCCCcCceeccc
Q 000869 794 INVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCERLQEIISKGGTDDQVTPNFVFPG 873 (1247)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~ 873 (1247)
|++....+. .+..+++|+.|++++|. ++...+ ..+..+++|+.|++++|.....++... ..++
T Consensus 414 n~l~~~~p~-----~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~----------~~~~ 476 (968)
T PLN00113 414 NSFSGELPS-----EFTKLPLVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSF----------GSKR 476 (968)
T ss_pred CEeeeECCh-----hHhcCCCCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCccc----------cccc
Confidence 655432211 22345667777776643 443323 234456777777777776443333211 2356
Q ss_pred cCceecccCCccccccCCCCcCCCCCccEEEEecCCcceeccccccccccccccccCCCccccccccccccccccceeec
Q 000869 874 LTTLRLIGLPKLKSLYPGMHTSEWPALKVLNVLACDQVTVFASELFHFCKISEENKLDTPARQSLFFLEKVFPNLEELGL 953 (1247)
Q Consensus 874 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 953 (1247)
|+.|++++|.-....+.. ...+++|+.|++++|.-....|... ..+++|++|++
T Consensus 477 L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~------------------------~~l~~L~~L~L 530 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRK--LGSLSELMQLKLSENKLSGEIPDEL------------------------SSCKKLVSLDL 530 (968)
T ss_pred ceEEECcCCccCCccChh--hhhhhccCEEECcCCcceeeCChHH------------------------cCccCCCEEEC
Confidence 777777766433333321 1235777888887764433333211 13677888888
Q ss_pred cccCcccccccCCCccccccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeecc
Q 000869 954 NGKDIRMIWHGNFPQHLFGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSN 1016 (1247)
Q Consensus 954 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~ 1016 (1247)
++|.+.......+. .+++|+.|++++|.....+ +..+..+++|+.|++++|+-...+|.
T Consensus 531 s~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 531 SHNQLSGQIPASFS--EMPVLSQLDLSQNQLSGEI--PKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCcccccCChhHh--CcccCCEEECCCCcccccC--ChhHhcCcccCEEeccCCcceeeCCC
Confidence 88777655443332 3678888888888765544 34566788888888888775555554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=339.01 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=127.1
Q ss_pred CCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc-cCCcccc-cCCCCcEEEccCcCCCCcccccCCCCCcEE
Q 000869 344 PQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF-SLPPSID-HLLNLQTLCLDQCILGDVAIIGKLKNLEIL 421 (1247)
Q Consensus 344 ~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~l~-~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L 421 (1247)
.+++.|++++|.+.... ...|..+++|++|+|++|.+. .+|..+. .+++|++|+|++|.+......+.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 47899999999887544 456789999999999999997 7887765 999999999999998765445779999999
Q ss_pred EccCCCCC-cCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCC
Q 000869 422 SFSGSGIV-KLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPR 500 (1247)
Q Consensus 422 ~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 500 (1247)
++++|.+. .+|..++++++|++|++++| .+....|..++++++|++|++++|.+. ...+..++++++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~ 213 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLV-----------GQIPRELGQMKS 213 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCc-----------CcCChHHcCcCC
Confidence 99999887 78999999999999999999 565555667999999999999998664 335567778888
Q ss_pred CcEEEEeecCC
Q 000869 501 LTTLEVHVKND 511 (1247)
Q Consensus 501 L~~L~l~~~~~ 511 (1247)
|+.|+++.|..
T Consensus 214 L~~L~L~~n~l 224 (968)
T PLN00113 214 LKWIYLGYNNL 224 (968)
T ss_pred ccEEECcCCcc
Confidence 88888776544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.1e-21 Score=248.90 Aligned_cols=296 Identities=19% Similarity=0.237 Sum_probs=180.7
Q ss_pred cCCccceecccccccccccccccccccCccccccEEEEccCcccccccchhHHhhhcccCeeeeccccccceeeccCCCC
Q 000869 783 FPSLEALDLRQINVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCERLQEIISKGGTD 862 (1247)
Q Consensus 783 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~ 862 (1247)
+.+|++|++.++.+..+|.+. ..+++|+.|++++|..++.++. +..+++|+.|++++|..+..++...+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~------~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~-- 678 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGV------HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQ-- 678 (1153)
T ss_pred ccCCcEEECcCcccccccccc------ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhh--
Confidence 678888999888888888643 2577899999988888877643 56788899999999988877765322
Q ss_pred CCCcCceeccccCceecccCCccccccCCCCcCCCCCccEEEEecCCcceeccccccccccccccccCCCcccccccccc
Q 000869 863 DQVTPNFVFPGLTTLRLIGLPKLKSLYPGMHTSEWPALKVLNVLACDQVTVFASELFHFCKISEENKLDTPARQSLFFLE 942 (1247)
Q Consensus 863 ~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 942 (1247)
.+++|+.|.+.+|.+++.+|... .+++|+.|++++|..+..+|..
T Consensus 679 -------~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~------------------------- 723 (1153)
T PLN03210 679 -------YLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI------------------------- 723 (1153)
T ss_pred -------ccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc-------------------------
Confidence 57888999999998888887643 4688999999999888766531
Q ss_pred ccccccceeeccccCcccccccCCCccccccccEEEEecCCCcccc-----cchHHHhhcCCccEEEecCCCcceeeccC
Q 000869 943 KVFPNLEELGLNGKDIRMIWHGNFPQHLFGSLKVLRLADDHVSAAG-----FPLGLLERFNNLEKLRLDGCSCKEILSND 1017 (1247)
Q Consensus 943 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~~l~~l~~L~~L~i~~c~~l~~~~~~ 1017 (1247)
.++|++|+++++.+..++.. ..+++|++|.+.+|....-. .+......+++|+.|++++|+.+.+++..
T Consensus 724 --~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 724 --STNISWLDLDETAIEEFPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred --cCCcCeeecCCCcccccccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 34566666666666555432 12455666666554321100 00111122345666666666555544332
Q ss_pred CCcccccccccccceeeecccccchhhhccCCccccccccccEEEEecCCccccccCCccccccCccEEEEccccCchhc
Q 000869 1018 GHLDKHGGKLAQIKSLRLVRLNDLNQLWKEDSQMDSMFQYVDDVLIHGCDSLLILLPSSSVSFWNLTSLEVSSCKKLINL 1097 (1247)
Q Consensus 1018 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l~p~~~~~~~~L~~L~i~~C~~l~~~ 1097 (1247)
...+++|+.|+|.+|.+++.+ |... .+++|++|++++|..+..+ |. ..++|+.|++++ ++++.+
T Consensus 798 ------i~~L~~L~~L~Ls~C~~L~~L----P~~~-~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~-n~i~~i 861 (1153)
T PLN03210 798 ------IQNLHKLEHLEIENCINLETL----PTGI-NLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSR-TGIEEV 861 (1153)
T ss_pred ------hhCCCCCCEEECCCCCCcCee----CCCC-CccccCEEECCCCCccccc-cc---cccccCEeECCC-CCCccC
Confidence 123556666666666666555 3332 4556666666666665544 43 234566666655 345555
Q ss_pred chhhHHhhhcccceEEEcccccceeeeccccccccccceeecccceeecccCCCcceec
Q 000869 1098 VASSAAKSLVALVKMQVFGCRAMTQVVKSEGNQLAKEEIVFSKLKRLSLVDLDSLASFC 1156 (1247)
Q Consensus 1098 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 1156 (1247)
|. ....+++|+.|++++|.++..++..... +++|+.|.+.+|++|+.++
T Consensus 862 P~--si~~l~~L~~L~L~~C~~L~~l~~~~~~--------L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 862 PW--WIEKFSNLSFLDMNGCNNLQRVSLNISK--------LKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred hH--HHhcCCCCCEEECCCCCCcCccCccccc--------ccCCCeeecCCCccccccc
Confidence 42 2455566666666666666555443222 5566666666666665443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-22 Score=213.14 Aligned_cols=196 Identities=18% Similarity=0.258 Sum_probs=150.1
Q ss_pred cceEEEccCCccccccC----cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcE
Q 000869 323 KCYAISIRDSSIHELLE----GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQT 398 (1247)
Q Consensus 323 ~~~~l~l~~~~i~~~~~----~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~ 398 (1247)
+.+-++...+.+..+.. +.-.+..++|++++|.+. ++...+|.++++|+.+++.+|.++.+|.......||+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 34556666666655432 224456778999999888 55677889999999999999999999987778888999
Q ss_pred EEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCch-hhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCc
Q 000869 399 LCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLPE-ELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCF 475 (1247)
Q Consensus 399 L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~ 475 (1247)
|+|.+|.|..+ ..+.-++.||.||||.|.|.++|. +|..-.++++|+|++| .++.+..+.|..+.+|-+|.++.|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc
Confidence 99999999888 678899999999999999998874 4666688999999999 8888888889999999999999988
Q ss_pred cccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchh--hccccceeeEEecCc
Q 000869 476 VEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGF--FARKLERFKISVGEA 533 (1247)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~~~~l 533 (1247)
+. .-.+..+++|++|+.|++..|.+..+.... ++++|+.+.+..|++
T Consensus 209 it-----------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 209 IT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred cc-----------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 76 234467788999999998887765432111 344444444444443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=8.9e-22 Score=211.80 Aligned_cols=318 Identities=21% Similarity=0.324 Sum_probs=225.0
Q ss_pred hcccceEEEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCC-cccccCCCCc
Q 000869 320 ALRKCYAISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLP-PSIDHLLNLQ 397 (1247)
Q Consensus 320 ~~~~~~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~L~ 397 (1247)
.+.+++.+++..|.++.+|... ...+|+.|+|.+|.+. .+..+.++.++.||+||||.|.|..+| ++|..-.+++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~---sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS---SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccc---cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 4667888888888888888877 4556888888888887 456666788888888888888888775 3566667888
Q ss_pred EEEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCch-hhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecC
Q 000869 398 TLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLPE-ELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNC 474 (1247)
Q Consensus 398 ~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~ 474 (1247)
+|+|++|.|+.+ ..|..|.+|-+|.|+.|.|+.+|. .|.+|++|+.|+|..| .++......|..|.+|+.|.+..|
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc
Confidence 888888888877 678888888888888888888874 5666888888888888 677665666888888888888888
Q ss_pred ccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchh--hccccceeeEEecCccccCCCCcCccccccccCC
Q 000869 475 FVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGF--FARKLERFKISVGEAAFLPFGATSNDACFRLSWP 552 (1247)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~i~~~~l~~~~~~~~~~~~~~~~~~~ 552 (1247)
.+....+ ..+-.+.++++|++..|.+..+.++. +++.|+.|+++.|.+..+..++ |
T Consensus 256 ~I~kL~D-----------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----------W- 313 (873)
T KOG4194|consen 256 DISKLDD-----------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----------W- 313 (873)
T ss_pred CcccccC-----------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch----------h-
Confidence 7663332 34556778888888888877766654 7888888888888876665442 3
Q ss_pred cccccccccceeeeeccCc-ccccccccccccceeEEeeccccCcchhhhcccccCcCCCcEEEeecCCCceeeccCCCc
Q 000869 553 LFMINDSETLRTLKLKLNS-TTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKHLHVQNNPDFMCIVDSMER 631 (1247)
Q Consensus 553 ~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~i~~~~~~ 631 (1247)
.-.+.|+.|+++.|. .......+..++.|+.|.|+... ++.+. +....++.+|++|++..+.--..|.+..
T Consensus 314 ----sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa-- 385 (873)
T KOG4194|consen 314 ----SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAA-- 385 (873)
T ss_pred ----hhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecch--
Confidence 455778888888877 55666677888888888887643 22221 2122456788888887775444443221
Q ss_pred CccCCcccccceecccccccccccccCccccccccccceEEEec
Q 000869 632 VPLHDAFPLLESLNLYNLMKLERICQDRLSVQSFNELKTIRVEH 675 (1247)
Q Consensus 632 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 675 (1247)
.....+++|+.|.+.+. +++.++.. .+..|++|+.|++.+
T Consensus 386 -~~f~gl~~LrkL~l~gN-qlk~I~kr--Afsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 386 -VAFNGLPSLRKLRLTGN-QLKSIPKR--AFSGLEALEHLDLGD 425 (873)
T ss_pred -hhhccchhhhheeecCc-eeeecchh--hhccCcccceecCCC
Confidence 12234667777776664 34444322 244566666666666
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.5e-23 Score=215.46 Aligned_cols=260 Identities=26% Similarity=0.344 Sum_probs=179.5
Q ss_pred ceEEEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEcc
Q 000869 324 CYAISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLD 402 (1247)
Q Consensus 324 ~~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~ 402 (1247)
+..+.+.+|.+..+.+.. .+..+.+|.+++|... ++|+.+ +++..+..|+.++|.+..+|+.++.+..|+.|+.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~---~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS---QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh---hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 455667777776665544 6777778888887776 556655 67777777888888888888888888888888888
Q ss_pred CcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccC
Q 000869 403 QCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDE 481 (1247)
Q Consensus 403 ~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~ 481 (1247)
+|.+..+ ++++.+..|..|+..+|++..+|.+++++..|..|++.+| .++.+++..+. ++.|++|+...|-..
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~---- 196 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE---- 196 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----
Confidence 7777665 7777888888888888888888888888777888888777 67777776555 777888777655443
Q ss_pred CCCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceeeEEecCccccCCCCcCccccccccCCccccccccc
Q 000869 482 GPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFKISVGEAAFLPFGATSNDACFRLSWPLFMINDSET 561 (1247)
Q Consensus 482 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1247)
..+.+++.+.+|..|+++.|.+..+|+.-+...|..|.+..|.++.++.... +++.+
T Consensus 197 --------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~---------------~~L~~ 253 (565)
T KOG0472|consen 197 --------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHL---------------KHLNS 253 (565)
T ss_pred --------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHh---------------ccccc
Confidence 5667777777777777777777777755567777777776666555543322 45666
Q ss_pred ceeeeeccCcccccccccccccceeEEeeccccCcchhhhcccccCcCCCcEEEeecCC
Q 000869 562 LRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKHLHVQNNP 620 (1247)
Q Consensus 562 l~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 620 (1247)
+..|++.-|+....+..+.-+.+|++|++++.. +......+ +.+ +|+.|.+.|++
T Consensus 254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred ceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCc
Confidence 777777766655555555666777777777633 22222222 334 67777777765
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.5e-22 Score=218.59 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=255.1
Q ss_pred ecCccccCCCCh-hhcccceEEEccCCccccccC-cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc
Q 000869 307 VRNEEVWEWPDE-DALRKCYAISIRDSSIHELLE-GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF 384 (1247)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~~~~l~l~~~~i~~~~~-~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~ 384 (1247)
.++..+..+|.+ ..++++.|+++++|++..+.. ...+|.||.+.+..|+.... .+|.++| .++.|.+||||+|.+.
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF-~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIF-RLKDLTILDLSHNQLR 116 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhc-ccccceeeecchhhhh
Confidence 445556666654 357889999999999887765 45899999999999988755 4688886 7999999999999999
Q ss_pred cCCcccccCCCCcEEEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcC
Q 000869 385 SLPPSIDHLLNLQTLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISS 462 (1247)
Q Consensus 385 ~lp~~l~~l~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~ 462 (1247)
+.|..+...+++-+|+|++|+|+.+ +.+-+|..|-+||||+|.+..+|..+..|.+|++|+|++| -+..+.-..+-.
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPs 195 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPS 195 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCcc
Confidence 9999999999999999999999887 6688999999999999999999999999999999999998 454443344556
Q ss_pred CCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchh-hccccceeeEEecCccccCCCCc
Q 000869 463 LIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGF-FARKLERFKISVGEAAFLPFGAT 541 (1247)
Q Consensus 463 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~l~~~~~~~~ 541 (1247)
|++|++|.+++..-. ....+..+..+.+|+.++++.|+...+|..+ .+.+|+.|++++|.++.+....
T Consensus 196 mtsL~vLhms~TqRT----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~- 264 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRT----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE- 264 (1255)
T ss_pred chhhhhhhcccccch----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-
Confidence 788899998876433 3456778889999999999999999999877 8899999999999987765431
Q ss_pred CccccccccCCcccccccccceeeeeccCcccccccccccccceeEEeeccccCcchhhhcccccCcCCCcEEEeecCCC
Q 000869 542 SNDACFRLSWPLFMINDSETLRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKHLHVQNNPD 621 (1247)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 621 (1247)
+.-.++++|.++.|+....+..+..++.|+.|...+.+..-+.+|. ..+.+.+|+.+...++ .
T Consensus 265 ---------------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN-~ 327 (1255)
T KOG0444|consen 265 ---------------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANN-K 327 (1255)
T ss_pred ---------------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhcc-c
Confidence 4456889999999887777888888999998888765432222221 1244567777776665 3
Q ss_pred ceeeccCCCcCccCCcccccceecccccccccccccCccccccccccceEEEeccCCCcc
Q 000869 622 FMCIVDSMERVPLHDAFPLLESLNLYNLMKLERICQDRLSVQSFNELKTIRVEHCGQLSN 681 (1247)
Q Consensus 622 ~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 681 (1247)
++-++. +...++.|+.|.+.+..-+ .+ +....-++.|+.|++...+++.-
T Consensus 328 LElVPE------glcRC~kL~kL~L~~NrLi-TL---PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 328 LELVPE------GLCRCVKLQKLKLDHNRLI-TL---PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cccCch------hhhhhHHHHHhccccccee-ec---hhhhhhcCCcceeeccCCcCccC
Confidence 333321 3345567777776554322 11 22234567777777777776653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-21 Score=221.93 Aligned_cols=143 Identities=28% Similarity=0.368 Sum_probs=118.1
Q ss_pred EEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcC
Q 000869 327 ISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCI 405 (1247)
Q Consensus 327 l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~ 405 (1247)
+++++.+.+.||..+ ....+..|++..|... ..|-++..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l---~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL---SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc---cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 445556666666544 4445888888888665 445566677777999999999999999999999999999999999
Q ss_pred CCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecC
Q 000869 406 LGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNC 474 (1247)
Q Consensus 406 l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~ 474 (1247)
+..+ .+.+++.+|++|.|.+|.+..+|.++..+++|++|++++| ....+| ..+..+..+..+..++|
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~P-l~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIP-LVIEVLTAEEELAASNN 147 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCc-hhHHhhhHHHHHhhhcc
Confidence 8776 7889999999999999999999999999999999999999 677774 44788888888888877
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2.2e-22 Score=206.95 Aligned_cols=176 Identities=23% Similarity=0.362 Sum_probs=151.7
Q ss_pred CCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEE
Q 000869 344 PQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILS 422 (1247)
Q Consensus 344 ~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~ 422 (1247)
-.++.+++++|... .+.++. .++..|.+|++.+|...++|++++.+..++.|+.++|++..+ +.++.+..|+.|+
T Consensus 45 v~l~~lils~N~l~---~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE---VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh---hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 45778899999887 334444 899999999999999999999999999999999999998876 8899999999999
Q ss_pred ccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCc
Q 000869 423 FSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLT 502 (1247)
Q Consensus 423 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 502 (1247)
.++|.+.++|++|+.+..|..|+..+| ++...|++ +.++.+|..|++.+|.+. +.+.+.-.++.|+
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRLK 186 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHHH
Confidence 999999999999999999999999998 88888655 888999999999888765 4445555588999
Q ss_pred EEEEeecCCCCCCchh-hccccceeeEEecCccccC
Q 000869 503 TLEVHVKNDNILPEGF-FARKLERFKISVGEAAFLP 537 (1247)
Q Consensus 503 ~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~l~~~~ 537 (1247)
+|+...|-...+|..+ .+.+|+.|.+..|++.++|
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 9999999999999888 7788888888888766554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-20 Score=215.26 Aligned_cols=130 Identities=25% Similarity=0.341 Sum_probs=72.6
Q ss_pred cccccceeeccccCcccccccCCCccccccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeeccCCCcccc
Q 000869 944 VFPNLEELGLNGKDIRMIWHGNFPQHLFGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSNDGHLDKH 1023 (1247)
Q Consensus 944 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 1023 (1247)
..+.|++|++-+|.+.+-.-. +...+..||.|+++++.--+ +|...+.++..|++|+++| ++++.++..-
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSG-NkL~~Lp~tv----- 426 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSG-NKLTTLPDTV----- 426 (1081)
T ss_pred hhHHHHHHHHhcCcccccchh--hhccccceeeeeeccccccc--CCHHHHhchHHhHHHhccc-chhhhhhHHH-----
Confidence 466788888888777654321 23446788888887775222 4777788888888888887 4566554321
Q ss_pred cccccccceeeecccccchhhhccCCccccccccccEEEEecCCccccc-cCCccccccCccEEEEcccc
Q 000869 1024 GGKLAQIKSLRLVRLNDLNQLWKEDSQMDSMFQYVDDVLIHGCDSLLIL-LPSSSVSFWNLTSLEVSSCK 1092 (1247)
Q Consensus 1024 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l-~p~~~~~~~~L~~L~i~~C~ 1092 (1247)
..+..|++|...+ +.+.++ | .+..++.|+.++++ |+.|..+ +|. ...-++|++|++++..
T Consensus 427 -a~~~~L~tL~ahs-N~l~~f----P-e~~~l~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 -ANLGRLHTLRAHS-NQLLSF----P-ELAQLPQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -HhhhhhHHHhhcC-Cceeec----h-hhhhcCcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCc
Confidence 2355555554433 223333 3 44555666666663 3444322 222 1111456666666544
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=2.1e-20 Score=202.33 Aligned_cols=174 Identities=19% Similarity=0.242 Sum_probs=138.9
Q ss_pred CCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEE
Q 000869 343 CPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEIL 421 (1247)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L 421 (1247)
++-.|-.++++|.+++.. .|.+. ..|..++.|.|..+.+..+|+.++.+.+|+.|.+.+|++..+ ..++.|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~-FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDR-FPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCc-CchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 456677888888877442 25544 889999999999999999999999999999999999988777 788889999999
Q ss_pred EccCCCCC--cCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccc-cccCCC
Q 000869 422 SFSGSGIV--KLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRL-DELMHL 498 (1247)
Q Consensus 422 ~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l 498 (1247)
+++.|+++ .+|..|-+|..|.+||||+| +++..| ..+..-+++-+|++++|.+.. .+ .-+.+|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP-~~LE~AKn~iVLNLS~N~Iet------------IPn~lfinL 149 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVP-TNLEYAKNSIVLNLSYNNIET------------IPNSLFINL 149 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchh-hhhhcc-hhhhhhcCcEEEEcccCcccc------------CCchHHHhh
Confidence 99999876 78999999999999999998 888885 448888888899998887762 22 234577
Q ss_pred CCCcEEEEeecCCCCCCchh-hccccceeeEEecC
Q 000869 499 PRLTTLEVHVKNDNILPEGF-FARKLERFKISVGE 532 (1247)
Q Consensus 499 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~ 532 (1247)
+.|-.|+++.|....+|+.+ .+.+|++|.+++|.
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 77888888888888887766 66677777666555
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.8e-17 Score=147.23 Aligned_cols=167 Identities=25% Similarity=0.353 Sum_probs=125.3
Q ss_pred cccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccc
Q 000869 334 IHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AII 412 (1247)
Q Consensus 334 i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~ 412 (1247)
+.+++..+.+++++.|.+++|.+. .+|+.+ ..+++|++|++++|+|.++|.+++.++.||.|++.-|++..+ ..|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~---~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT---VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee---ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 345555566777777777877776 456665 778888888888888888888888888888888887776554 778
Q ss_pred cCCCCCcEEEccCCCCC--cCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccc
Q 000869 413 GKLKNLEILSFSGSGIV--KLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINS 490 (1247)
Q Consensus 413 ~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 490 (1247)
|.++.|++|||.+|++. .+|..|..|..|+.|+|+.| ....+|+. +++|++|+.|.+..|.+. .
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------~ 164 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------S 164 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------------h
Confidence 88888888888888765 67777777778888888877 66666554 788888888888777654 4
Q ss_pred cccccCCCCCCcEEEEeecCCCCCCchh
Q 000869 491 RLDELMHLPRLTTLEVHVKNDNILPEGF 518 (1247)
Q Consensus 491 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 518 (1247)
.+.+++.+++|+.|++.+|....+|..+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhh
Confidence 6677788888888888888777777654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=6.8e-16 Score=140.35 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=142.4
Q ss_pred CCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEecc
Q 000869 369 GMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLS 447 (1247)
Q Consensus 369 ~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 447 (1247)
.+.+...|.||+|.++.+|+.|..+.+|++|++++|+++++ .+++.+++|++|++..|.+..+|.+||.++.|+.|||.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 67888999999999999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred CCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchh-hcccccee
Q 000869 448 NCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGF-FARKLERF 526 (1247)
Q Consensus 448 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l 526 (1247)
+|.--....|+.|..|..|+-|+++.|.+. ..+.+++++++|+.|.+..|..-.+|..+ .+..|+.|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 983334445777888999999999988765 56788999999999999999999999998 78999999
Q ss_pred eEEecCccccCC
Q 000869 527 KISVGEAAFLPF 538 (1247)
Q Consensus 527 ~i~~~~l~~~~~ 538 (1247)
.|.+|.+..++.
T Consensus 179 hiqgnrl~vlpp 190 (264)
T KOG0617|consen 179 HIQGNRLTVLPP 190 (264)
T ss_pred hcccceeeecCh
Confidence 999998877654
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=9e-15 Score=153.03 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=79.4
Q ss_pred cccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeeccCCCcccccccccccceeeecccccchhhhccC-C
Q 000869 971 FGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSNDGHLDKHGGKLAQIKSLRLVRLNDLNQLWKED-S 1049 (1247)
Q Consensus 971 ~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~ 1049 (1247)
+++|+.|.+..|.+.++......-.+++.|+.+++.+|..+.+- .+......++.|++|.++.|...++-+... .
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----TLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----hHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 46777777777776666533344456667777777776544421 112222346777777777776655421100 0
Q ss_pred ccccccccccEEEEecCCccccccCCccccccCccEEEEccccCchhcchhhHHhhhcccceEEE
Q 000869 1050 QMDSMFQYVDDVLIHGCDSLLILLPSSSVSFWNLTSLEVSSCKKLINLVASSAAKSLVALVKMQV 1114 (1247)
Q Consensus 1050 ~~~~~l~~L~~L~i~~c~~l~~l~p~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~L~~L~i 1114 (1247)
........|+.|.+++|+.+++-.-+....+++|+.+++.+|..++.-+...+.+++++++....
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 11233445666777777766544333355666777777777777766666666666666654443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=6.4e-12 Score=150.40 Aligned_cols=249 Identities=20% Similarity=0.147 Sum_probs=172.5
Q ss_pred ecCccccCCCChhhcccceEEEccCCccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccC
Q 000869 307 VRNEEVWEWPDEDALRKCYAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL 386 (1247)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l 386 (1247)
..+..+..+|. ....+++.|++.+|.++.+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..+
T Consensus 208 Ls~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt---sLP~----lp~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 208 VGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT---SLPV----LPPGLLELSIFSNPLTHL 277 (788)
T ss_pred cCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC---cccC----cccccceeeccCCchhhh
Confidence 34445555554 4456889999999999988864 588999999999887 4453 246889999999999888
Q ss_pred CcccccCCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCC
Q 000869 387 PPSIDHLLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRL 466 (1247)
Q Consensus 387 p~~l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L 466 (1247)
|... .+|+.|++++|.++.++. .+++|++|++++|.++.+|... .+|+.|++++| .+..+|. + ..+|
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l--p~~L 344 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L--PSGL 344 (788)
T ss_pred hhch---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--cccc
Confidence 7633 578889999998887743 2478999999999998887633 35778888888 7777753 1 2578
Q ss_pred CEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceeeEEecCccccCCCCcCcccc
Q 000869 467 EELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFKISVGEAAFLPFGATSNDAC 546 (1247)
Q Consensus 467 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~l~~~~~~~~~~~~~ 546 (1247)
++|++++|.+... +. + ..+|+.|+++.|.+..+|.. ..+|+.|+++.|.+..++.
T Consensus 345 q~LdLS~N~Ls~L------------P~-l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~-------- 399 (788)
T PRK15387 345 QELSVSDNQLASL------------PT-L--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPV-------- 399 (788)
T ss_pred ceEecCCCccCCC------------CC-C--CcccceehhhccccccCccc--ccccceEEecCCcccCCCC--------
Confidence 9999998876511 11 1 24577778888887777653 3578888888877654431
Q ss_pred ccccCCcccccccccceeeeeccCcccccccccccccceeEEeeccccCcchhhhcccccCcCCCcEEEeecCC
Q 000869 547 FRLSWPLFMINDSETLRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKHLHVQNNP 620 (1247)
Q Consensus 547 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 620 (1247)
...+|+.|+++.|.....+. ...+|+.|++.++. ++.+...+ ..+++|+.|++++|+
T Consensus 400 -----------l~s~L~~LdLS~N~LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl--~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 -----------LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESL--IHLSSETTVNLEGNP 456 (788)
T ss_pred -----------cccCCCEEEccCCcCCCCCc---chhhhhhhhhccCc-ccccChHH--hhccCCCeEECCCCC
Confidence 12457778887776322111 13467778887644 33332222 357899999999886
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=5.8e-15 Score=154.42 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=38.9
Q ss_pred cccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeeccCCCcccccccccccceeeecccccchh
Q 000869 971 FGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSNDGHLDKHGGKLAQIKSLRLVRLNDLNQ 1043 (1247)
Q Consensus 971 ~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 1043 (1247)
+.-+.++++..|..+++.....+...+..|+.|+.++|..+.+.... +..+.+++|+.|.+..|..+++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~----aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW----ALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH----HHhcCCCceEEEeccccchhhh
Confidence 44566666667777776644444555667777777777665533221 1123355566666666555444
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=1.5e-11 Score=147.32 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=122.4
Q ss_pred cceEEEccCCccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEcc
Q 000869 323 KCYAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLD 402 (1247)
Q Consensus 323 ~~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~ 402 (1247)
.-..+++..+.+..+|..+. ++|+.|++.+|.+. .+|. .+++|++|++++|.++.+|.. ..+|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt---~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC---CCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 34578888888888887553 57899999998877 4453 357899999999999888753 4688889999
Q ss_pred CcCCCCcccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCC
Q 000869 403 QCILGDVAIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEG 482 (1247)
Q Consensus 403 ~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~ 482 (1247)
+|.+..++.+ ..+|+.|++++|.++.+|.. +++|+.|++++| .+..++. . ..+|+.|++.+|.+..
T Consensus 271 ~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~-l---p~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 271 SNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA-L---PSELCKLWAYNNQLTS---- 336 (788)
T ss_pred CCchhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCC-C---cccccccccccCcccc----
Confidence 9888776432 35788899999988888863 467899999988 7777743 1 2357778887776541
Q ss_pred CCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceeeEEecCc
Q 000869 483 PNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFKISVGEA 533 (1247)
Q Consensus 483 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~l 533 (1247)
.+ . -..+|+.|++++|.+..+|.. ..+|+.|.++.|.+
T Consensus 337 --------LP-~--lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L 374 (788)
T PRK15387 337 --------LP-T--LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL 374 (788)
T ss_pred --------cc-c--cccccceEecCCCccCCCCCC--Ccccceehhhcccc
Confidence 11 1 114688888888887776642 24555555554443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=8.9e-12 Score=150.50 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=95.3
Q ss_pred cceEEEccCCccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEcc
Q 000869 323 KCYAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLD 402 (1247)
Q Consensus 323 ~~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~ 402 (1247)
+...+.+.++.+..+|..+ .++|+.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK---SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC---cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3455666666666665433 245666666666655 3455443 356666666666666665443 356666666
Q ss_pred CcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccC
Q 000869 403 QCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDE 481 (1247)
Q Consensus 403 ~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~ 481 (1247)
+|.+..+ ..+. .+|++|++++|.+..+|..+. .+|++|++++| .++.+|.. +. .+|++|++++|.+..
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~--- 318 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA--- 318 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc---
Confidence 6666554 2222 356666666666666665443 35666666666 55555432 21 345566666554431
Q ss_pred CCCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceeeEEecCcc
Q 000869 482 GPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFKISVGEAA 534 (1247)
Q Consensus 482 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~l~ 534 (1247)
.+..+ .++|+.|+++.|.+..+|..+. ++|+.|+++.|.+.
T Consensus 319 ---------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 319 ---------LPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQIT 359 (754)
T ss_pred ---------CCccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCC
Confidence 11111 1355666666655555544332 45555555555433
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1e-11 Score=150.07 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=151.5
Q ss_pred ecCccccCCCChhhcccceEEEccCCccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccC
Q 000869 307 VRNEEVWEWPDEDALRKCYAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL 386 (1247)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l 386 (1247)
+.+..+..+|. .+..+++.+++.+|.+..+|... .++|++|++++|.+. .+|..+. .+|+.|+|++|.+..+
T Consensus 185 L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt---sLP~~l~---~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 185 LKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT---SIPATLP---DTIQEMELSINRITEL 256 (754)
T ss_pred eCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc---cCChhhh---ccccEEECcCCccCcC
Confidence 33444555554 34568999999999999998765 368999999999887 4576553 4799999999999999
Q ss_pred CcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCC
Q 000869 387 PPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIR 465 (1247)
Q Consensus 387 p~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~ 465 (1247)
|..+. .+|++|++++|.+..+ ..+. .+|++|++++|.++.+|..+. .+|+.|++++| .+..+|.. + ..+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~s 326 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPG 326 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--ccc
Confidence 98775 5899999999998876 3343 589999999999999987654 47999999998 78877543 3 368
Q ss_pred CCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchhhccccceeeEEecCcccc
Q 000869 466 LEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGFFARKLERFKISVGEAAFL 536 (1247)
Q Consensus 466 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~l~~~ 536 (1247)
|+.|++++|.+. ..+..+ .++|+.|+++.|.+..+|..+ .+.|+.|+++.|.+..+
T Consensus 327 L~~L~Ls~N~Lt------------~LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 327 LKTLEAGENALT------------SLPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNL 382 (754)
T ss_pred ceeccccCCccc------------cCChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCC
Confidence 999999998765 122222 268999999999988777654 36788888888776544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=3.7e-13 Score=139.75 Aligned_cols=260 Identities=22% Similarity=0.276 Sum_probs=144.5
Q ss_pred cccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccC-CcccccCCCCcEEEccC-cCCCCc--
Q 000869 334 IHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQ-CILGDV-- 409 (1247)
Q Consensus 334 i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~L~~L~L~~-~~l~~~-- 409 (1247)
+.++|.... +....++|+.|.++ .+|++.|+.+++||.||||+|+|+.+ |++|..+..|-.|.+.+ |+|+++
T Consensus 58 L~eVP~~LP-~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 58 LTEVPANLP-PETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cccCcccCC-CcceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 444444331 23445667777666 56777777777777777777777766 66777777766666555 667666
Q ss_pred ccccCCCCCcEEEccCCCCCcCc-hhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCc------cccccCC
Q 000869 410 AIIGKLKNLEILSFSGSGIVKLP-EELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCF------VEWEDEG 482 (1247)
Q Consensus 410 ~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~------~~~~~~~ 482 (1247)
..|++|..|+-|.+.-|.+.-++ +.+..|++|..|.+..| .+..+....+..+..++++.+..|. +.|....
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 56777777777777777666443 45667777777777766 5666665566666666666554333 2221100
Q ss_pred CCcccccccccccCCC----------------------CCCcEE----EEeecCCCCCCchh--hccccceeeEEecCcc
Q 000869 483 PNSETINSRLDELMHL----------------------PRLTTL----EVHVKNDNILPEGF--FARKLERFKISVGEAA 534 (1247)
Q Consensus 483 ~~~~~~~~~~~~l~~l----------------------~~L~~L----~l~~~~~~~~~~~~--~~~~L~~l~i~~~~l~ 534 (1247)
- ...+.+++.. ..++.+ .-..+.....|..- .+++|+++++++|.++
T Consensus 213 ~-----a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 L-----AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred H-----hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 0 0000000000 001111 00000111111111 5566777777777766
Q ss_pred ccCCCCcCccccccccCCcccccccccceeeeeccCc-ccccccccccccceeEEeeccccCcchhhhcccccCcCCCcE
Q 000869 535 FLPFGATSNDACFRLSWPLFMINDSETLRTLKLKLNS-TTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLKH 613 (1247)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~ 613 (1247)
.+..+.+ .+...++.|.+..|+ ..+....|.++..|+.|+|.+... +.+.+... .....|.+
T Consensus 288 ~i~~~aF---------------e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~~aF-~~~~~l~~ 350 (498)
T KOG4237|consen 288 RIEDGAF---------------EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAPGAF-QTLFSLST 350 (498)
T ss_pred hhhhhhh---------------cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee-EEEecccc-cccceeee
Confidence 6554433 566677777777666 555666778888888888877443 22222221 33456777
Q ss_pred EEeecCC
Q 000869 614 LHVQNNP 620 (1247)
Q Consensus 614 L~l~~~~ 620 (1247)
|++-.++
T Consensus 351 l~l~~Np 357 (498)
T KOG4237|consen 351 LNLLSNP 357 (498)
T ss_pred eehccCc
Confidence 7776654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=1.1e-12 Score=136.20 Aligned_cols=270 Identities=18% Similarity=0.204 Sum_probs=196.8
Q ss_pred eecCccccCCCChhhcccceEEEccCCccccccCcC--CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccC-CC
Q 000869 306 VVRNEEVWEWPDEDALRKCYAISIRDSSIHELLEGL--ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCR-MQ 382 (1247)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~--~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~-~~ 382 (1247)
.-++..+.++|. +.......|.+..|.|+.+|+.. .+++||.|+|++|.+. .|.++.|.+++.|..|-+.+ |.
T Consensus 52 dCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCCc
Confidence 334556666664 45667889999999999999866 8999999999999999 56788999999988887777 89
Q ss_pred CccCCc-ccccCCCCcEEEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCch-hhcCCCCCcEEeccCCCCCcc----
Q 000869 383 FFSLPP-SIDHLLNLQTLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLPE-ELGQLTKLRHLDLSNCFKLKV---- 454 (1247)
Q Consensus 383 i~~lp~-~l~~l~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~---- 454 (1247)
|+.+|. .|..|..|+.|.+..|.+.-+ ..+..|++|..|.+.+|.+..++. .|..+..++++.+..|..+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 999975 688999999999999988776 789999999999999999998887 788899999998776642111
Q ss_pred -------cChhhhcCCCCCCEEEeecCccc----------cccC-----CCCcccccccccccCCCCCCcEEEEeecCCC
Q 000869 455 -------IAPNVISSLIRLEELYMSNCFVE----------WEDE-----GPNSETINSRLDELMHLPRLTTLEVHVKNDN 512 (1247)
Q Consensus 455 -------~~~~~~~~L~~L~~L~l~~~~~~----------~~~~-----~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 512 (1247)
..+..++......-..+....+. +.+. .............++.|++|+.|++++|.+.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00111111111110001000000 0000 0000001122345899999999999999998
Q ss_pred CCCchh--hccccceeeEEecCccccCCCCcCccccccccCCcccccccccceeeeeccCc-ccccccccccccceeEEe
Q 000869 513 ILPEGF--FARKLERFKISVGEAAFLPFGATSNDACFRLSWPLFMINDSETLRTLKLKLNS-TTISSKKLEGIKNVEYLC 589 (1247)
Q Consensus 513 ~~~~~~--~~~~L~~l~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~l~~L~~L~ 589 (1247)
.+.++. ....++.|.+..|.+..+.-+. |.+...|+.|++..|. +.+....|..+..|..|.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~---------------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGM---------------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHh---------------hhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 877665 7789999999988877665443 3778889999999998 666777999999999998
Q ss_pred ecccc
Q 000869 590 LDKLQ 594 (1247)
Q Consensus 590 L~~~~ 594 (1247)
+-...
T Consensus 353 l~~Np 357 (498)
T KOG4237|consen 353 LLSNP 357 (498)
T ss_pred hccCc
Confidence 87543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=3.3e-11 Score=147.98 Aligned_cols=129 Identities=23% Similarity=0.302 Sum_probs=102.6
Q ss_pred cCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcC--CCCc--ccccCCCCCcEEEccCC-CCCcCchhhcCCCCCc
Q 000869 368 TGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCI--LGDV--AIIGKLKNLEILSFSGS-GIVKLPEELGQLTKLR 442 (1247)
Q Consensus 368 ~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~--l~~~--~~~~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~ 442 (1247)
......|...+-+|.+..++.+.. .+.|++|-+.++. +..+ ..|..+++|++|||++| .+.++|.+|+.|.|||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 345678888888998887776544 3479999999986 5555 44889999999999988 7889999999999999
Q ss_pred EEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecC
Q 000869 443 HLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKN 510 (1247)
Q Consensus 443 ~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 510 (1247)
+|+++++ .++.+|. .+++|+.|.+|++..+... ...+..+..|++|++|.+....
T Consensus 599 yL~L~~t-~I~~LP~-~l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDT-GISHLPS-GLGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCC-Cccccch-HHHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 9999998 8999865 4999999999999876433 1123445558889998886543
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=2.5e-09 Score=139.57 Aligned_cols=264 Identities=16% Similarity=0.217 Sum_probs=164.6
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCccc--------------cchHHHHHHHH
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQE--------------ETESSRASRLH 65 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~--------------~~~~~~~~~~~ 65 (1247)
.+|.||||++.+++++ ++.++|+++... .+...+...++..++..... .........+.
T Consensus 40 paG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 40 PAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred CCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 3799999999998853 336999999744 45555666666555311110 11122233444
Q ss_pred HHHhc-CCeEEEEEeCCCCccc--c-hhhccCCCCCCCCcEEEEecCChhhhh--hc-CCcceEEcC----CCCHHHHHH
Q 000869 66 EQLKR-EEKILIILDNIWKRVD--L-ETVGIPFGDDHRGCKLLLTARDRTVLF--SM-GSEKNFLVD----ILKEEEAWR 134 (1247)
Q Consensus 66 ~~l~~-~~~~LlvlDd~~~~~~--~-~~l~~~~~~~~~~~~vliTtR~~~~~~--~~-~~~~~~~l~----~l~~~ea~~ 134 (1247)
..+.. +.+++||+||++...+ . +.+...+.....+.++|||||...... .. ......+++ +|+.+|+.+
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ 193 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQ 193 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHH
Confidence 44443 6899999999987532 1 122222222345677889999853221 11 122345566 899999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCC-CChhHHHHH-HHHH
Q 000869 135 LFKLMAGDDVENRELKSTATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNFGG-VPAEAYLTI-ELSY 212 (1247)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~~~-~~~~i~~~l-~~sy 212 (1247)
+|....|... ..+.+.+|.+.++|.|+++..++..++..... .......+ .+ ....+...+ ...+
T Consensus 194 ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~l~~~v~ 260 (903)
T PRK04841 194 FFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL--------AGINASHLSDYLVEEVL 260 (903)
T ss_pred HHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh--------cCCCchhHHHHHHHHHH
Confidence 9998876422 24567899999999999999998877644210 01111111 11 122344444 3448
Q ss_pred cCCCchhHHHHHHhccCCCCCcChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeec-cC-CCCceeccHHH
Q 000869 213 NYLEGEKLKNIFLLCSLMGNEIATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLG-GD-NNEKLSMHDVV 290 (1247)
Q Consensus 213 ~~L~~~~~~~~~~~~a~fp~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~-~~-~~~~~~~h~lv 290 (1247)
+.||++ .++.+...|+++ .++.+.+-... +. .+ ....+++|.+.+++.. .+ ....|+.|+++
T Consensus 261 ~~l~~~-~~~~l~~~a~~~-~~~~~l~~~l~-------~~---~~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~ 324 (903)
T PRK04841 261 DNVDLE-TRHFLLRCSVLR-SMNDALIVRVT-------GE---EN----GQMRLEELERQGLFIQRMDDSGEWFRYHPLF 324 (903)
T ss_pred hcCCHH-HHHHHHHhcccc-cCCHHHHHHHc-------CC---Cc----HHHHHHHHHHCCCeeEeecCCCCEEehhHHH
Confidence 899999 899999999987 66654433221 11 11 1345888889998653 22 33479999999
Q ss_pred HHHHHHhhh
Q 000869 291 RAVAISIAC 299 (1247)
Q Consensus 291 ~~~~~~~~~ 299 (1247)
+++++....
T Consensus 325 r~~l~~~l~ 333 (903)
T PRK04841 325 ASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHH
Confidence 999998763
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=7.5e-11 Score=117.83 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=116.3
Q ss_pred CCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccC
Q 000869 369 GMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSN 448 (1247)
Q Consensus 369 ~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 448 (1247)
..+.|..+|||+|.|+.+.+++.-++.+|+|++++|.+..+..+..|++|.+|||++|.+.++-..=.+|.|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45679999999999999999999999999999999999999889999999999999998887765556888999999999
Q ss_pred CCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCc
Q 000869 449 CFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPE 516 (1247)
Q Consensus 449 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 516 (1247)
| .+..+ +.+++|-+|..|++.+|.+.. -..+..+++++.|+++.+.+|.+..++.
T Consensus 362 N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~----------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N-KIETL--SGLRKLYSLVNLDLSSNQIEE----------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hHhhh--hhhHhhhhheeccccccchhh----------HHHhcccccccHHHHHhhcCCCccccch
Confidence 9 78777 348899999999999998762 2245688999999999999998876654
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.96 E-value=1.2e-08 Score=118.33 Aligned_cols=266 Identities=21% Similarity=0.196 Sum_probs=172.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccc--------------hHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEET--------------ESSRASRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~--------------~~~~~~~~~~ 66 (1247)
+|.||||++.+.+..... =..|.|+++++.. +...+...++..++...+... -......+..
T Consensus 46 AGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~ 122 (894)
T COG2909 46 AGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLN 122 (894)
T ss_pred CCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHH
Confidence 799999999999984332 3579999987654 466677777766653332221 1223344444
Q ss_pred HHhc-CCeEEEEEeCCCCc---ccchhhccCCCCCCCCcEEEEecCChhhhhh---cCCcceEEcC----CCCHHHHHHH
Q 000869 67 QLKR-EEKILIILDNIWKR---VDLETVGIPFGDDHRGCKLLLTARDRTVLFS---MGSEKNFLVD----ILKEEEAWRL 135 (1247)
Q Consensus 67 ~l~~-~~~~LlvlDd~~~~---~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~---~~~~~~~~l~----~l~~~ea~~l 135 (1247)
.+.. .++.++||||-.-. .--+.+...+.....+-.++||||.+.-..- .-....++++ .|+.+|+.++
T Consensus 123 Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~f 202 (894)
T COG2909 123 ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAF 202 (894)
T ss_pred HHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHH
Confidence 4443 47899999997544 2223344444445578889999999875431 1123455555 3899999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCChhHH-HHHHHHHc
Q 000869 136 FKLMAGDDVENRELKSTATEVAKACKGLPIALTTIARALRNK-SMPQWKTTLQQLRMPSLVNFGGVPAEAY-LTIELSYN 213 (1247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~-~~l~~sy~ 213 (1247)
|....+..- .+..+..+.+...|-+-|+..++=.++++ +...-...+ .+...-+. ....--++
T Consensus 203 l~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L-----------sG~~~~l~dYL~eeVld 267 (894)
T COG2909 203 LNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL-----------SGAASHLSDYLVEEVLD 267 (894)
T ss_pred HHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-----------cchHHHHHHHHHHHHHh
Confidence 998886432 34567899999999999999999888844 333321111 11111121 23345678
Q ss_pred CCCchhHHHHHHhccCCCCCcChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeec--cCCCCceeccHHHH
Q 000869 214 YLEGEKLKNIFLLCSLMGNEIATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLG--GDNNEKLSMHDVVR 291 (1247)
Q Consensus 214 ~L~~~~~~~~~~~~a~fp~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~--~~~~~~~~~h~lv~ 291 (1247)
.||++ +|..+.-+|+++.= .- .|...- .+ ++....++++|.+++++.. .+..+.|+.|++..
T Consensus 268 ~Lp~~-l~~FLl~~svl~~f-~~-eL~~~L------tg-------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFa 331 (894)
T COG2909 268 RLPPE-LRDFLLQTSVLSRF-ND-ELCNAL------TG-------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFA 331 (894)
T ss_pred cCCHH-HHHHHHHHHhHHHh-hH-HHHHHH------hc-------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHH
Confidence 99999 89999999998741 00 111110 01 1223345899999998763 35677899999999
Q ss_pred HHHHHhhhcc
Q 000869 292 AVAISIACRD 301 (1247)
Q Consensus 292 ~~~~~~~~~e 301 (1247)
+|.+.....+
T Consensus 332 eFL~~r~~~~ 341 (894)
T COG2909 332 EFLRQRLQRE 341 (894)
T ss_pred HHHHhhhccc
Confidence 9999877653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=5.4e-10 Score=109.03 Aligned_cols=103 Identities=26% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCcEEEccCCCCccCCcccc-cCCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchhh-cCCCCCcEEeccCC
Q 000869 372 KLKVVDFCRMQFFSLPPSID-HLLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEEL-GQLTKLRHLDLSNC 449 (1247)
Q Consensus 372 ~Lr~L~Ls~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~ 449 (1247)
+++.|+|.+|.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|.|+.++..+ ..+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 3444444444444332 233 34445555555555555544555555555555555555554333 23555555555555
Q ss_pred CCCcccCh-hhhcCCCCCCEEEeecCcc
Q 000869 450 FKLKVIAP-NVISSLIRLEELYMSNCFV 476 (1247)
Q Consensus 450 ~~l~~~~~-~~~~~L~~L~~L~l~~~~~ 476 (1247)
.+..+.. ..++.+++|++|++.+|.+
T Consensus 99 -~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 99 -KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred -cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 3333211 1244455555555555544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1e-09 Score=107.04 Aligned_cols=134 Identities=27% Similarity=0.246 Sum_probs=35.8
Q ss_pred CccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-c
Q 000869 332 SSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-A 410 (1247)
Q Consensus 332 ~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~ 410 (1247)
+.|+.++...++.+++.|+|++|.+.. +. ..-..+.+|++|++++|.|+.++ .+..+++|++|++++|.++.+ .
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~---Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIST---IE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccc---cc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 344444444455555666666665542 11 11113556666666666666553 355566666666666666655 2
Q ss_pred cc-cCCCCCcEEEccCCCCCcCc--hhhcCCCCCcEEeccCCCCCccc---ChhhhcCCCCCCEEEe
Q 000869 411 II-GKLKNLEILSFSGSGIVKLP--EELGQLTKLRHLDLSNCFKLKVI---APNVISSLIRLEELYM 471 (1247)
Q Consensus 411 ~~-~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~~---~~~~~~~L~~L~~L~l 471 (1247)
.+ ..+++|++|++++|.|..+. ..+..+++|++|++.+|. +... ....+..+++|+.|+.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 33 24666666666666665432 234556666666666652 2221 1233556677777664
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=6.3e-11 Score=129.27 Aligned_cols=172 Identities=25% Similarity=0.316 Sum_probs=86.7
Q ss_pred EEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcC
Q 000869 327 ISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCI 405 (1247)
Q Consensus 327 l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~ 405 (1247)
.+++.|++.++|..+ .|-.|..+.+..|.+. .+|..+ ..+..|.+|+|+.|.+..+|..++.| -|++|.+++|+
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccce---ecchhh-hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCc
Confidence 444445555555433 3444555555555443 223322 45555555555555555555555443 25555555555
Q ss_pred CCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCC
Q 000869 406 LGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPN 484 (1247)
Q Consensus 406 l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 484 (1247)
++.+ ..++.+.+|..||.+.|.+..+|..++.+..|+.|+++.| ++..+|+. +..| .|..|+++.|++.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis------- 224 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS------- 224 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee-------
Confidence 5443 4455555555555555555555555555555555555555 44455433 3322 3555555555443
Q ss_pred cccccccccccCCCCCCcEEEEeecCCCCCCchh
Q 000869 485 SETINSRLDELMHLPRLTTLEVHVKNDNILPEGF 518 (1247)
Q Consensus 485 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 518 (1247)
..+-.+.+|++|++|.+.+|....-|..+
T Consensus 225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -----ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 33445555555555555555555444433
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=7e-10 Score=125.52 Aligned_cols=184 Identities=21% Similarity=0.198 Sum_probs=114.2
Q ss_pred cccceEEEccCCccc-----cccCcC-CCCCccEEEccCCCCcc---ccccchhhhcCCCCCcEEEccCCCCc-cCCccc
Q 000869 321 LRKCYAISIRDSSIH-----ELLEGL-ECPQLEFLYMDSNGSSV---EINVPEKFFTGMKKLKVVDFCRMQFF-SLPPSI 390 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~-----~~~~~~-~~~~L~~L~l~~n~~~~---~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~l 390 (1247)
..+++.+.+.++.+. .+++.. ..+.++.++++++.... ........|..+++|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344667777777652 333333 56678888888776541 11111245567788888888888776 234444
Q ss_pred ccCCC---CcEEEccCcCCCC-----c-ccccCC-CCCcEEEccCCCCC-----cCchhhcCCCCCcEEeccCCCCCccc
Q 000869 391 DHLLN---LQTLCLDQCILGD-----V-AIIGKL-KNLEILSFSGSGIV-----KLPEELGQLTKLRHLDLSNCFKLKVI 455 (1247)
Q Consensus 391 ~~l~~---L~~L~L~~~~l~~-----~-~~~~~L-~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~ 455 (1247)
..+.+ |++|++++|.+.. + ..+..+ ++|+.|++++|.+. .++..+..+.+|++|++++| .+...
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchH
Confidence 44444 8888888887753 1 345566 78888888888776 34455667778888888887 55421
Q ss_pred ----ChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCC
Q 000869 456 ----APNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDN 512 (1247)
Q Consensus 456 ----~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 512 (1247)
.+..+..+.+|++|++++|.+. ..........+..+++|++|++++|.+.
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~-------~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLT-------DEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccC-------hHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1222445568888888887654 1111122344566777888888776554
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=1.5e-09 Score=122.89 Aligned_cols=133 Identities=21% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCccEEEccCCCCcccc-ccchhhhcCCCCCcEEEccCCCCcc-------CCcccccCCCCcEEEccCcCCCCc--ccc
Q 000869 343 CPQLEFLYMDSNGSSVEI-NVPEKFFTGMKKLKVVDFCRMQFFS-------LPPSIDHLLNLQTLCLDQCILGDV--AII 412 (1247)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~~-------lp~~l~~l~~L~~L~L~~~~l~~~--~~~ 412 (1247)
++.|+.|+++++.+.... ......+...+.|+.|+++++.+.. ++..+..+.+|+.|++++|.+... ..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666666543210 0011223444556666666654442 123344555666666666655421 222
Q ss_pred cCC---CCCcEEEccCCCCC-----cCchhhcCC-CCCcEEeccCCCCCccc----ChhhhcCCCCCCEEEeecCcc
Q 000869 413 GKL---KNLEILSFSGSGIV-----KLPEELGQL-TKLRHLDLSNCFKLKVI----APNVISSLIRLEELYMSNCFV 476 (1247)
Q Consensus 413 ~~L---~~L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~L~~~~~l~~~----~~~~~~~L~~L~~L~l~~~~~ 476 (1247)
..+ ++|++|++++|.+. .+...+..+ ++|+.|++++| .+... ....+..+.+|++|++++|.+
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 222 23666666665554 122334444 55666666665 33310 012244445566666655544
No 34
>PF05729 NACHT: NACHT domain
Probab=98.75 E-value=5.7e-08 Score=97.75 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=86.9
Q ss_pred CCccHHHHHHHHHHHhhhccC----CCeEEEEEcCCccCHH---HHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDKL----FDRVVFSEVSQTIDIK---KIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKI 74 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----f~~~~w~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (1247)
+|+||||++++++.+...... +..++|+..+...... .+...+..+.......... .....+...+++
T Consensus 9 ~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 83 (166)
T PF05729_consen 9 PGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQELLEKNKRV 83 (166)
T ss_pred CCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHHHHHcCCce
Confidence 799999999999998876543 3456777766544332 4444444444322111111 222333357999
Q ss_pred EEEEeCCCCcccc---------hhhccCCCC--CCCCcEEEEecCChhhhh---hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 75 LIILDNIWKRVDL---------ETVGIPFGD--DHRGCKLLLTARDRTVLF---SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 75 LlvlDd~~~~~~~---------~~l~~~~~~--~~~~~~vliTtR~~~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
++|+|++|+...- ..+...+.. ..++.+++||+|...... .......+++++|++++..+++.++.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 9999999886331 112211222 256899999999987722 33445689999999999999998876
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.74 E-value=7.4e-07 Score=97.58 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=107.9
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHH----HHhcCCeEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHE----QLKREEKILI 76 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----~l~~~~~~Ll 76 (1247)
.+|+||||+++.+++...... + .++|+. ....+..+++..++..+|..............+.+ ....+++.++
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vl 127 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQER-V-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALL 127 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCCC-e-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 379999999999998876321 1 123332 33456778899999999876544433333333333 2335788999
Q ss_pred EEeCCCCcc--cchhhc---cCCCCCCCCcEEEEecCChhhhhhc----------CCcceEEcCCCCHHHHHHHHHHHh-
Q 000869 77 ILDNIWKRV--DLETVG---IPFGDDHRGCKLLLTARDRTVLFSM----------GSEKNFLVDILKEEEAWRLFKLMA- 140 (1247)
Q Consensus 77 vlDd~~~~~--~~~~l~---~~~~~~~~~~~vliTtR~~~~~~~~----------~~~~~~~l~~l~~~ea~~l~~~~~- 140 (1247)
|+|+++... .++.+. ..-........|++|.... ....+ .....+.+++++.+|..+++...+
T Consensus 128 iiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 128 VVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred EEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 999998763 333332 1111122233455665432 11111 113467899999999999998777
Q ss_pred --CCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 141 --GDDVENRELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 141 --~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
|......-..+....|++.++|.|..|..++..+
T Consensus 207 ~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 207 RAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2211222345789999999999999999888776
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=8e-10 Score=120.84 Aligned_cols=148 Identities=25% Similarity=0.335 Sum_probs=102.6
Q ss_pred ccceEEEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEE
Q 000869 322 RKCYAISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLC 400 (1247)
Q Consensus 322 ~~~~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~ 400 (1247)
-.+..+.+..|.+..+|..+ .+..|++|+++.|.+. .+|..++ .+ -|++|-+++|+++.+|+.++.+.+|..||
T Consensus 98 ~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS---~lp~~lC-~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 98 VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS---HLPDGLC-DL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh---cCChhhh-cC-cceeEEEecCccccCCcccccchhHHHhh
Confidence 34455666677777777655 6777777777777766 4555542 22 37777777777777777777777777777
Q ss_pred ccCcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccc
Q 000869 401 LDQCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVE 477 (1247)
Q Consensus 401 L~~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 477 (1247)
.+.|.+..+ +.++.|.+||.|.++.|++..+|.+++.|+ |..||++.| ++..+| -.|.+|+.|++|-+.+|.+.
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN-kis~iP-v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN-KISYLP-VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC-ceeecc-hhhhhhhhheeeeeccCCCC
Confidence 777776655 667777777777777777777777777554 777777776 666663 44777777777777777655
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.1e-09 Score=107.75 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=71.6
Q ss_pred cccceEEEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEE
Q 000869 321 LRKCYAISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTL 399 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L 399 (1247)
|+-+..+++++|.|+.+.+.+ -.|+++.|+++.|++... +.+..+.+|..||||+|.+.++--.-.++-|.++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-----hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 455666666666666666555 346666666666655411 12455666666666666655554333455566666
Q ss_pred EccCcCCCCcccccCCCCCcEEEccCCCCCcCc--hhhcCCCCCcEEeccCC
Q 000869 400 CLDQCILGDVAIIGKLKNLEILSFSGSGIVKLP--EELGQLTKLRHLDLSNC 449 (1247)
Q Consensus 400 ~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~ 449 (1247)
.|.+|.++.++.+++|.+|.+||+++|+|..+- .+||+|+-|++|.|.+|
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 666666666666666666666666666665442 34556666666655555
No 38
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=6.3e-08 Score=103.78 Aligned_cols=282 Identities=21% Similarity=0.228 Sum_probs=186.0
Q ss_pred CCCccHHHHHHHHHHHhhhccCCC-eEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEe
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFD-RVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
.|||||||++-.+++ .+. .|+ ++.+++.....+...+.-.++..++......+ .....+..+.. ++|.++|+|
T Consensus 22 ~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~--~~~~~~~~~~~-~rr~llvld 95 (414)
T COG3903 22 AGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD--SAVDTLVRRIG-DRRALLVLD 95 (414)
T ss_pred cCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccch--HHHHHHHHHHh-hhhHHHHhc
Confidence 389999999999999 442 264 56677888888888777777777887664321 12223344443 799999999
Q ss_pred CCCCccc-chhhccCCCCCCCCcEEEEecCChhhhhhcCCcceEEcCCCCH-HHHHHHHHHHhC----CCCCChhhHHHH
Q 000869 80 NIWKRVD-LETVGIPFGDDHRGCKLLLTARDRTVLFSMGSEKNFLVDILKE-EEAWRLFKLMAG----DDVENRELKSTA 153 (1247)
Q Consensus 80 d~~~~~~-~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~~~~~~l~~l~~-~ea~~l~~~~~~----~~~~~~~~~~~~ 153 (1247)
|.....+ ..++...+......-.++.|+|.... +.+.....+++++. +++.++|...+. ...-.......+
T Consensus 96 ncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v 172 (414)
T COG3903 96 NCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAV 172 (414)
T ss_pred CcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHH
Confidence 9876622 22222233334556678999988754 35566777888876 489999888772 112223345789
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHH----HhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHHhccC
Q 000869 154 TEVAKACKGLPIALTTIARALRNKSMPQWKTTLQ----QLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFLLCSL 229 (1247)
Q Consensus 154 ~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~l~----~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~a~ 229 (1247)
..|+++.+|.|++|..+++..+.-...+-.+.++ .++.- ...-........+.+.+||.-|... -+..|..++.
T Consensus 173 ~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~~~~rLa~ 250 (414)
T COG3903 173 AEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERALFGRLAV 250 (414)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHHHhcchhh
Confidence 9999999999999999999998775555433333 22222 1111122335678999999999998 5999999999
Q ss_pred CCCCcChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeeccC--CCCceeccHHHHHHHHHhhhc
Q 000869 230 MGNEIATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLGGD--NNEKLSMHDVVRAVAISIACR 300 (1247)
Q Consensus 230 fp~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~--~~~~~~~h~lv~~~~~~~~~~ 300 (1247)
|..+|... ...|.+.|-.... ..-.....+..+++.+++-..+ ....|+.-+.+|.|+..+..+
T Consensus 251 ~~g~f~~~--l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 251 FVGGFDLG--LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hhhhhccc--HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888775 3444444443211 1222333456677888875432 233577778888888776654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3.4e-08 Score=114.94 Aligned_cols=173 Identities=29% Similarity=0.353 Sum_probs=91.9
Q ss_pred CCCCccEEEccCCCCccccccchhhhcCCC-CCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCccc-ccCCCCCc
Q 000869 342 ECPQLEFLYMDSNGSSVEINVPEKFFTGMK-KLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDVAI-IGKLKNLE 419 (1247)
Q Consensus 342 ~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~-~~~L~~L~ 419 (1247)
..+.++.|++.+|.+. .+++.. ..++ +|+.|++++|.+..+|..+..+++|+.|++++|++..++. .+.+..|+
T Consensus 114 ~~~~l~~L~l~~n~i~---~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNIT---DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcccc---cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 4455566666666555 333322 3332 5666666666666665555666666666666666655532 23666666
Q ss_pred EEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCC
Q 000869 420 ILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLP 499 (1247)
Q Consensus 420 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 499 (1247)
.|++++|.+..+|..+..+.+|++|.+++|. +... +..+.++.++..|.+.++.+. ..+..++.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~-~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIEL-LSSLSNLKNLSGLELSNNKLE------------DLPESIGNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceec-chhhhhcccccccccCCceee------------eccchhcccc
Confidence 6666666666666555555556666666552 2222 122555555555554444332 1134445555
Q ss_pred CCcEEEEeecCCCCCCchhhccccceeeEEecC
Q 000869 500 RLTTLEVHVKNDNILPEGFFARKLERFKISVGE 532 (1247)
Q Consensus 500 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~ 532 (1247)
+++.|+++.|.+..++......+++.++++.+.
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCcc
Confidence 566666666665555553344555555555444
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=108.86 Aligned_cols=207 Identities=21% Similarity=0.178 Sum_probs=142.3
Q ss_pred hcccceEEEccCCccccccC---cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcc--cccCC
Q 000869 320 ALRKCYAISIRDSSIHELLE---GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPS--IDHLL 394 (1247)
Q Consensus 320 ~~~~~~~l~l~~~~i~~~~~---~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--l~~l~ 394 (1247)
..+++|.+++.++.+...+. .-.|++++.|+|++|-+.... .--.+...+++|+.|+++.|.+...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35688899999988877763 337999999999998665332 2245668899999999999987643222 23678
Q ss_pred CCcEEEccCcCCCC--c-ccccCCCCCcEEEccCC-CCCcCchhhcCCCCCcEEeccCCCCCcccC-hhhhcCCCCCCEE
Q 000869 395 NLQTLCLDQCILGD--V-AIIGKLKNLEILSFSGS-GIVKLPEELGQLTKLRHLDLSNCFKLKVIA-PNVISSLIRLEEL 469 (1247)
Q Consensus 395 ~L~~L~L~~~~l~~--~-~~~~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~-~~~~~~L~~L~~L 469 (1247)
+|+.|.|+.|.++. + .....+++|..|+|..| .+..--.+...+..|+.|||++| .+..++ ....+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhh
Confidence 99999999998863 3 45667899999999999 44333344556778999999998 454443 2337788999999
Q ss_pred EeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCchh---hccccceeeEEecCc
Q 000869 470 YMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEGF---FARKLERFKISVGEA 533 (1247)
Q Consensus 470 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~i~~~~l 533 (1247)
+++.|.+....... .........+++|+.|++..|.+...+..- .+.+|+.|.+..+.+
T Consensus 277 nls~tgi~si~~~d-----~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPD-----VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCC-----ccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 99888765322211 111223456788999999888875444322 455666666555553
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9e-09 Score=109.41 Aligned_cols=181 Identities=21% Similarity=0.223 Sum_probs=134.3
Q ss_pred hhcccceEEEccCCccccccCcC----CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc--cCCccccc
Q 000869 319 DALRKCYAISIRDSSIHELLEGL----ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF--SLPPSIDH 392 (1247)
Q Consensus 319 ~~~~~~~~l~l~~~~i~~~~~~~----~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~l~~ 392 (1247)
....++|.++++.|-+.++.... .+|+|+.|+++.|...... ....-..+++|+.|.|+.|+++ .+......
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34668899999998777665432 7999999999999877554 3333347889999999999987 44444567
Q ss_pred CCCCcEEEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCc--hhhcCCCCCcEEeccCCCCCcccChhh------hcC
Q 000869 393 LLNLQTLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLP--EELGQLTKLRHLDLSNCFKLKVIAPNV------ISS 462 (1247)
Q Consensus 393 l~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~~~------~~~ 462 (1247)
+++|+.|+|.+|....+ .....+..|+.|||++|.+...+ .-++.++.|..|+++.| .+..+.... ...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcc
Confidence 88999999999953222 55667888999999999887766 45789999999999988 666542211 245
Q ss_pred CCCCCEEEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCC
Q 000869 463 LIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDN 512 (1247)
Q Consensus 463 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 512 (1247)
+.+|+.|++..|.+. ....+..+..+++|+.|.+..+.+.
T Consensus 300 f~kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccc----------cccccchhhccchhhhhhccccccc
Confidence 788999999988774 1244566777778888877666554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=8e-08 Score=111.81 Aligned_cols=177 Identities=26% Similarity=0.339 Sum_probs=147.8
Q ss_pred cccceEEEccCCccccccCcCCCC--CccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcE
Q 000869 321 LRKCYAISIRDSSIHELLEGLECP--QLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQT 398 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~~~~~~~~~~--~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~ 398 (1247)
...+..+.+..+.+.+++...... +|+.|++++|.+. .+| ...+.+++|+.|++++|.+..+|...+.+.+|+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh---hhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 356899999999999999988654 8999999999887 333 2348999999999999999999988779999999
Q ss_pred EEccCcCCCCccc-ccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccc
Q 000869 399 LCLDQCILGDVAI-IGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVE 477 (1247)
Q Consensus 399 L~L~~~~l~~~~~-~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 477 (1247)
|++++|.+..++. ++.+.+|++|.+++|.+...+..+.++.++..|.+.++ .+..+ +..++.+.+++.|++++|.+.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDL-PESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeec-cchhccccccceecccccccc
Confidence 9999999999844 46778899999999987788888999999999998888 56554 345889999999999998765
Q ss_pred cccCCCCcccccccccccCCCCCCcEEEEeecCCCCCCc
Q 000869 478 WEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPE 516 (1247)
Q Consensus 478 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 516 (1247)
.+..++.+.+++.|+++++.....+.
T Consensus 269 -------------~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 -------------SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -------------ccccccccCccCEEeccCccccccch
Confidence 23348889999999999887765443
No 43
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.44 E-value=3e-05 Score=90.14 Aligned_cols=257 Identities=16% Similarity=0.152 Sum_probs=144.0
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCC-cc--ccchHHHHHHHHHHHhc-CCeEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV-LQ--EETESSRASRLHEQLKR-EEKILI 76 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-~~--~~~~~~~~~~~~~~l~~-~~~~Ll 76 (1247)
.+|+|||+++++++++.......-.++|+++....+...++..++.+++.. .+ .....+....+.+.+.. +++.+|
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 379999999999999886543224577888887788889999999998652 21 12234445566666653 467899
Q ss_pred EEeCCCCcc------cchhhccCCCCCCCCcE--EEEecCChhhhhhc-------CCcceEEcCCCCHHHHHHHHHHHhC
Q 000869 77 ILDNIWKRV------DLETVGIPFGDDHRGCK--LLLTARDRTVLFSM-------GSEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 77 vlDd~~~~~------~~~~l~~~~~~~~~~~~--vliTtR~~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
|+|+++... .+..+...+. ...+++ +|.++....+.... .....+.+++++.++..+++..++.
T Consensus 143 viDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 143 ALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 999998742 2333322211 112323 56665554432211 1234678999999999999998872
Q ss_pred CC-CCChhhHHHHHHHHHHc----CCCchHHHHHHHHHh----c---C-ChhHHHHHHHHhcCCCCCCCCCCChhHHHHH
Q 000869 142 DD-VENRELKSTATEVAKAC----KGLPIALTTIARALR----N---K-SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTI 208 (1247)
Q Consensus 142 ~~-~~~~~~~~~~~~i~~~~----~g~Plai~~~a~~l~----~---~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l 208 (1247)
.. ....-..+++..|++.+ |..+.|+.++..... . . +......++++.. ....
T Consensus 222 ~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~--------------~~~~ 287 (394)
T PRK00411 222 EGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE--------------IVHL 287 (394)
T ss_pred hhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH--------------HHHH
Confidence 11 11111233444444444 456777766543221 1 1 4445555555421 1234
Q ss_pred HHHHcCCCchhHHHHHHhccCC-C---CCcChhHHHHHHH--hcCcccccccHHHHHHHHHHHHHHHhhcceeec
Q 000869 209 ELSYNYLEGEKLKNIFLLCSLM-G---NEIATSDLFKYCM--CLGIFKGVDTMENARTNFYALIHQLRDCFLLLG 277 (1247)
Q Consensus 209 ~~sy~~L~~~~~~~~~~~~a~f-p---~~~~~~~l~~~w~--~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 277 (1247)
.-.+..||.+ .|..+.-++.. . ..+...++..... +..+ +.. ......+-++++.|...+++..
T Consensus 288 ~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~--~~~--~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 288 SEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL--GYE--PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc--CCC--cCcHHHHHHHHHHHHhcCCeEE
Confidence 5568899997 34444433322 1 2355555443211 1111 111 1122445567888888888764
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=1.3e-06 Score=96.02 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=33.4
Q ss_pred cccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeeccCCCcccccccccccceeeecccccchhh
Q 000869 971 FGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSNDGHLDKHGGKLAQIKSLRLVRLNDLNQL 1044 (1247)
Q Consensus 971 ~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 1044 (1247)
+.+++.|++++| .++.+ | .-..+|++|.|++|..++.++.. .+++|+.|++.+|.+++.+
T Consensus 51 ~~~l~~L~Is~c-~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL-P----VLPNELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCccc-C----CCCCCCcEEEccCCCCcccCCch--------hhhhhhheEccCccccccc
Confidence 356666666666 44444 2 11235666666666666555431 1456666666666655544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.6e-07 Score=72.39 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=38.3
Q ss_pred CCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccC-CcccccCCCCcEEEccCcC
Q 000869 344 PQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQCI 405 (1247)
Q Consensus 344 ~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~L~~L~L~~~~ 405 (1247)
|+|++|++++|.+. .++.+.|..+++|++|++++|.+..+ |.+|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT---EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES---EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC---ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666655 44666667777777777777777666 3456666666666666664
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.1e-05 Score=81.26 Aligned_cols=203 Identities=14% Similarity=0.136 Sum_probs=119.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||||+.++...... | ..++...+-.+-++++ +++-.+....|++.+|++|.|
T Consensus 57 PG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i----------------~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 57 PGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREI----------------IEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred CCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHH----------------HHHHHHHHhcCCceEEEEehh
Confidence 7999999999999876533 3 3333222211111111 222223333489999999999
Q ss_pred CCc--ccchhhccCCCCCCCCcEEEE--ecCChhhhh---hcCCcceEEcCCCCHHHHHHHHHHHhCCC-C-----CChh
Q 000869 82 WKR--VDLETVGIPFGDDHRGCKLLL--TARDRTVLF---SMGSEKNFLVDILKEEEAWRLFKLMAGDD-V-----ENRE 148 (1247)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~vli--TtR~~~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~~~-~-----~~~~ 148 (1247)
..- .+.+.|. +....|.-|+| ||.++...- ......++.+++|+.++-.+++.+.+-+. . ...-
T Consensus 114 HRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 114 HRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred hhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 754 4555553 33446776676 888886532 23557799999999999999999955111 1 1112
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHh----cCChhHHHHHHHHhcCCCC---CCCCCCChhHHHHHHHHHcCCCchhHH
Q 000869 149 LKSTATEVAKACKGLPIALTTIARALR----NKSMPQWKTTLQQLRMPSL---VNFGGVPAEAYLTIELSYNYLEGEKLK 221 (1247)
Q Consensus 149 ~~~~~~~i~~~~~g~Plai~~~a~~l~----~~~~~~w~~~l~~l~~~~~---~~~~~~~~~i~~~l~~sy~~L~~~~~~ 221 (1247)
.+++..-+++.++|--.+.-....+.. ...... .+.+++...... ++-.+...++.++|.-|.+.=+++ .
T Consensus 191 ~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~-~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d--A 267 (436)
T COG2256 191 DEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLI-LELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPD--A 267 (436)
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccC-HHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcC--H
Confidence 345778888999887654444333332 221111 222333222211 222344557888999999888877 5
Q ss_pred HHHHhccCCCCC
Q 000869 222 NIFLLCSLMGNE 233 (1247)
Q Consensus 222 ~~~~~~a~fp~~ 233 (1247)
..+.++.++..|
T Consensus 268 ALyylARmi~~G 279 (436)
T COG2256 268 ALYYLARMIEAG 279 (436)
T ss_pred HHHHHHHHHhcC
Confidence 566666666544
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.20 E-value=6.8e-08 Score=116.74 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=29.4
Q ss_pred cccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcc
Q 000869 971 FGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCK 1011 (1247)
Q Consensus 971 ~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l 1011 (1247)
+++|+.|.+.+|..+++.....+...+++|++|+|++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 56777777777777666555666677777777777777766
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1e-06 Score=70.34 Aligned_cols=58 Identities=38% Similarity=0.531 Sum_probs=36.7
Q ss_pred CCcEEEccCCCCCcCch-hhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCc
Q 000869 417 NLEILSFSGSGIVKLPE-ELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCF 475 (1247)
Q Consensus 417 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~ 475 (1247)
+|++|++++|.++.+|. .|..+++|++|++++| .++.+++..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666653 4566666666666666 5666666666666666666666653
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=4.8e-06 Score=91.60 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=39.1
Q ss_pred cccccEEEEccCcccccccchhHHhhhcccCeeeeccccccceeeccCCCCCCCcCceeccccCceecccCCccccccCC
Q 000869 812 FQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCERLQEIISKGGTDDQVTPNFVFPGLTTLRLIGLPKLKSLYPG 891 (1247)
Q Consensus 812 ~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 891 (1247)
+.+++.|+|++| .++.++ .-.++|++|.+++|.+++.++.. ..++|+.|.+.+|.++..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPGS-----------IPEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCch-----------hhhhhhheEccCcccccccc--
Confidence 456677777776 566652 11235667777776666554420 12466666666666555443
Q ss_pred CCcCCCCCccEEEEe
Q 000869 892 MHTSEWPALKVLNVL 906 (1247)
Q Consensus 892 ~~~~~~~~L~~L~i~ 906 (1247)
++|+.|++.
T Consensus 112 ------~sLe~L~L~ 120 (426)
T PRK15386 112 ------ESVRSLEIK 120 (426)
T ss_pred ------cccceEEeC
Confidence 345555554
No 50
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.17 E-value=0.00047 Score=79.30 Aligned_cols=259 Identities=16% Similarity=0.130 Sum_probs=142.1
Q ss_pred CCCccHHHHHHHHHHHhhhcc-CC---CeEEEEEcCCccCHHHHHHHHHHHh---CCCccc--cchHHHHHHHHHHHhc-
Q 000869 1 MGGIGKTTLVKEVARKARKDK-LF---DRVVFSEVSQTIDIKKIQQAIAEKL---GLVLQE--ETESSRASRLHEQLKR- 70 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~-~f---~~~~w~~~~~~~~~~~~~~~i~~~l---~~~~~~--~~~~~~~~~~~~~l~~- 70 (1247)
.+|+|||+++++++++..... .. -.++|+++....+...++..++.++ +...+. ....+....+.+.+..
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999875321 11 1467888888778888999999988 333221 2233444556666543
Q ss_pred CCeEEEEEeCCCCcc--c---chhhccCC-CCCC--CCcEEEEecCChhhhhhc-------CCcceEEcCCCCHHHHHHH
Q 000869 71 EEKILIILDNIWKRV--D---LETVGIPF-GDDH--RGCKLLLTARDRTVLFSM-------GSEKNFLVDILKEEEAWRL 135 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~---~~~l~~~~-~~~~--~~~~vliTtR~~~~~~~~-------~~~~~~~l~~l~~~ea~~l 135 (1247)
+++++||||+++... . +..+.... .... ....+|.+|........+ .....+.+++++.+|..++
T Consensus 128 ~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred CCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHH
Confidence 578899999998761 1 22222110 0111 233445555444322111 1124688999999999999
Q ss_pred HHHHhC--CC--CCChhhHHHHHHHHHHcCCCch-HHHHHHHHH--h--c---C-ChhHHHHHHHHhcCCCCCCCCCCCh
Q 000869 136 FKLMAG--DD--VENRELKSTATEVAKACKGLPI-ALTTIARAL--R--N---K-SMPQWKTTLQQLRMPSLVNFGGVPA 202 (1247)
Q Consensus 136 ~~~~~~--~~--~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a~~l--~--~---~-~~~~w~~~l~~l~~~~~~~~~~~~~ 202 (1247)
+...+. .. ....+..+...+++....|.|. |+.++-... . . . +.+......+.+.
T Consensus 208 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~------------ 275 (365)
T TIGR02928 208 LENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE------------ 275 (365)
T ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH------------
Confidence 998873 11 1122223445566667778773 333322211 1 1 1 3333333333221
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHhccCC---C-CCcChhHHHHHHHh--cCcccccccHHHHHHHHHHHHHHHhhcceee
Q 000869 203 EAYLTIELSYNYLEGEKLKNIFLLCSLM---G-NEIATSDLFKYCMC--LGIFKGVDTMENARTNFYALIHQLRDCFLLL 276 (1247)
Q Consensus 203 ~i~~~l~~sy~~L~~~~~~~~~~~~a~f---p-~~~~~~~l~~~w~~--~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~ 276 (1247)
.....-.+..||.+ .+..+..++.. . ..+...++...+.. +.+ +. .......+.++++.|...|++.
T Consensus 276 --~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~--~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 276 --KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI--GV--DPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred --HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc--CC--CCCcHHHHHHHHHHHHhcCCeE
Confidence 12334566788887 45444443311 1 23666665553321 111 11 1233466777788888889887
Q ss_pred cc
Q 000869 277 GG 278 (1247)
Q Consensus 277 ~~ 278 (1247)
..
T Consensus 349 ~~ 350 (365)
T TIGR02928 349 AE 350 (365)
T ss_pred EE
Confidence 53
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.13 E-value=2.3e-07 Score=112.10 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=53.4
Q ss_pred cccccEEEEccCcccccccchhHHhhhcccCeeeeccc-cccceeeccCCCCCCCcCceeccccCceecccCCccccccC
Q 000869 812 FQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACC-ERLQEIISKGGTDDQVTPNFVFPGLTTLRLIGLPKLKSLYP 890 (1247)
Q Consensus 812 ~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c-~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 890 (1247)
+++|+.|.+.+|..++...-......++.|++|++++| .......... ......+++|+.|.+..|..+.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL-----LLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-----hhhhhhcCCcCccchhhhhccCchhH
Confidence 56677777777777766322345566777777777774 2221111000 01122346667777776666555544
Q ss_pred CCCcCCCCCccEEEEecCCcce
Q 000869 891 GMHTSEWPALKVLNVLACDQVT 912 (1247)
Q Consensus 891 ~~~~~~~~~L~~L~i~~C~~L~ 912 (1247)
......|++|+.|.+.+|..++
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHHhhCCCcceEccCCCCccc
Confidence 3344446677777766676654
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=3.1e-07 Score=106.68 Aligned_cols=189 Identities=23% Similarity=0.308 Sum_probs=108.6
Q ss_pred cceEEEccCCccccccC-cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEc
Q 000869 323 KCYAISIRDSSIHELLE-GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCL 401 (1247)
Q Consensus 323 ~~~~l~l~~~~i~~~~~-~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L 401 (1247)
.+..+++..|.|..+.. ...+..|..|++.+|.+.... ..+..+.+|++|++++|.|+.+. .+..+..|+.|++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~----~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE----NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcc----cchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 34444455555555333 335677777777777666322 11456777777777777777663 3566666777777
Q ss_pred cCcCCCCcccccCCCCCcEEEccCCCCCcCchh-hcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCcccccc
Q 000869 402 DQCILGDVAIIGKLKNLEILSFSGSGIVKLPEE-LGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWED 480 (1247)
Q Consensus 402 ~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~ 480 (1247)
++|.++.+..+..++.|+.+++++|.+..+... ...+.+|+.+.+.+| .+..+.. +..+..+..+++..+.+.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i~--- 221 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKIS--- 221 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccce---
Confidence 777777777677777777777777777666543 466677777777776 4444321 333344444444444433
Q ss_pred CCCCcccccccccccCCCCC--CcEEEEeecCCCCCCchh-hccccceeeEEecC
Q 000869 481 EGPNSETINSRLDELMHLPR--LTTLEVHVKNDNILPEGF-FARKLERFKISVGE 532 (1247)
Q Consensus 481 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~l~i~~~~ 532 (1247)
.+..+..+.. |+.+.+..+.+...+..+ .+..+..+++..+.
T Consensus 222 ----------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 222 ----------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ----------eccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 1222222232 666677766666553222 44455555544444
No 53
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.11 E-value=7.5e-06 Score=87.76 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=84.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHH---------H----HHHHhCCCc-------cccchHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQ---------A----IAEKLGLVL-------QEETESSRA 61 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~---------~----i~~~l~~~~-------~~~~~~~~~ 61 (1247)
.|+|||+|++++.+...... + .++|+..........+.. . +...+.... .........
T Consensus 29 rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (234)
T PF01637_consen 29 RGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSAL 106 (234)
T ss_dssp TTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--H
T ss_pred CcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHH
Confidence 69999999999999875321 2 455555443332221111 1 222221110 111234444
Q ss_pred HHHHHHHhc-CCeEEEEEeCCCCcc-cc----------hhhccCCCCCCCCcEEEEecCChhhhhh--------cCCcce
Q 000869 62 SRLHEQLKR-EEKILIILDNIWKRV-DL----------ETVGIPFGDDHRGCKLLLTARDRTVLFS--------MGSEKN 121 (1247)
Q Consensus 62 ~~~~~~l~~-~~~~LlvlDd~~~~~-~~----------~~l~~~~~~~~~~~~vliTtR~~~~~~~--------~~~~~~ 121 (1247)
..+.+.+.+ +++++||+|+++... .. ..+........+.+.|+++|. ..+... .+....
T Consensus 107 ~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~ 185 (234)
T PF01637_consen 107 ERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSH 185 (234)
T ss_dssp HHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS-HHHHHHTT-TTSTTTT---E
T ss_pred HHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc-hHHHHHhhcccCccccccce
Confidence 556666554 356999999998765 11 112222222333444444444 433322 234456
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 000869 122 FLVDILKEEEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 122 ~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
+.+++|+.+++++++...+.+...-+...+..++|++.+||+|..|..
T Consensus 186 ~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 186 IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 999999999999999998743311122456789999999999988764
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=6.2e-06 Score=100.30 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=69.0
Q ss_pred CcEEEccCCCCc-cCCcccccCCCCcEEEccCcCCCC-c-ccccCCCCCcEEEccCCCCC-cCchhhcCCCCCcEEeccC
Q 000869 373 LKVVDFCRMQFF-SLPPSIDHLLNLQTLCLDQCILGD-V-AIIGKLKNLEILSFSGSGIV-KLPEELGQLTKLRHLDLSN 448 (1247)
Q Consensus 373 Lr~L~Ls~~~i~-~lp~~l~~l~~L~~L~L~~~~l~~-~-~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~ 448 (1247)
++.|+|++|.+. .+|..++++++|+.|+|++|.+.. + ..++.+++|++|+|++|.+. .+|..+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777776 567777777777777777777753 3 46777777777777777776 6677777777777777777
Q ss_pred CCCCcccChhhhcCC-CCCCEEEeecCc
Q 000869 449 CFKLKVIAPNVISSL-IRLEELYMSNCF 475 (1247)
Q Consensus 449 ~~~l~~~~~~~~~~L-~~L~~L~l~~~~ 475 (1247)
| .+....|..++.+ .++..+++.+|.
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 7 4544334445442 355566666553
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=8.2e-06 Score=99.25 Aligned_cols=107 Identities=21% Similarity=0.397 Sum_probs=91.4
Q ss_pred CccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc-cCCcccccCCCCcEEEccCcCCCC-c-ccccCCCCCcEE
Q 000869 345 QLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF-SLPPSIDHLLNLQTLCLDQCILGD-V-AIIGKLKNLEIL 421 (1247)
Q Consensus 345 ~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~l~~l~~L~~L~L~~~~l~~-~-~~~~~L~~L~~L 421 (1247)
.++.|+|++|.+.+.+ |.. +..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. + ..++++++|++|
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccC--CHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4788999999987655 554 689999999999999998 789999999999999999999874 3 789999999999
Q ss_pred EccCCCCC-cCchhhcCC-CCCcEEeccCCCCCcc
Q 000869 422 SFSGSGIV-KLPEELGQL-TKLRHLDLSNCFKLKV 454 (1247)
Q Consensus 422 ~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~ 454 (1247)
+|++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999887 889888764 5778899988854433
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-07 Score=95.08 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=71.7
Q ss_pred ccCCccceecccccccccccccccccccCccccccEEEEccCcccccccchhHHhhhcccCeeeeccccccceeeccCCC
Q 000869 782 VFPSLEALDLRQINVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCERLQEIISKGGT 861 (1247)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~ 861 (1247)
+..+|+.|.+.++.+.+--... +..-.+|+.|+|+.|+.++.-...-++.+++.|.+|+|+.|...++.+..
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~-----iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--- 279 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNT-----IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--- 279 (419)
T ss_pred HHHhhhhccccccccCcHHHHH-----HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---
Confidence 3677888888888665422111 12456799999999999998766667889999999999999865544221
Q ss_pred CCCCcCceeccccCceecccCCc-cccccCCCCcCCCCCccEEEEecCCcce
Q 000869 862 DDQVTPNFVFPGLTTLRLIGLPK-LKSLYPGMHTSEWPALKVLNVLACDQVT 912 (1247)
Q Consensus 862 ~~~~~~~~~~~~L~~L~l~~c~~-L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 912 (1247)
.....-++|+.|.|+||.. +..-........||.|.+|++++|..++
T Consensus 280 ----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 280 ----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred ----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 1111235666666666642 1111111122334555555555554443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.6e-07 Score=94.66 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=56.3
Q ss_pred cccEEEEccCcccccccchhHHhhhcccCeeeeccccccceeeccCCCCCCCcCceeccccCceecccCCccccccCCCC
Q 000869 814 NLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCERLQEIISKGGTDDQVTPNFVFPGLTTLRLIGLPKLKSLYPGMH 893 (1247)
Q Consensus 814 ~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 893 (1247)
.|++|++++ ..++......++..+.+|+.|.|.+.. +.+-.. .....-.+|+.|+|+.|..+++......
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~--------~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIV--------NTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHH--------HHHhccccceeeccccccccchhHHHHH
Confidence 366666665 344433334566777888888887754 222111 0111236788888888888887766556
Q ss_pred cCCCCCccEEEEecCCcce
Q 000869 894 TSEWPALKVLNVLACDQVT 912 (1247)
Q Consensus 894 ~~~~~~L~~L~i~~C~~L~ 912 (1247)
...|+.|.+|+++.|.-.+
T Consensus 256 ~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHhhhhHhhcCchHhhccc
Confidence 6678888888888886544
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=6.5e-07 Score=103.98 Aligned_cols=172 Identities=23% Similarity=0.232 Sum_probs=125.0
Q ss_pred CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCcccccCCCCCcEE
Q 000869 342 ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDVAIIGKLKNLEIL 421 (1247)
Q Consensus 342 ~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L 421 (1247)
.+..++.+.+..|.+... ...+..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~----~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI----LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh----hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhh
Confidence 456677777887776631 2335788999999999999998876688899999999999999999999999999999
Q ss_pred EccCCCCCcCchhhcCCCCCcEEeccCCCCCcccCh-hhhcCCCCCCEEEeecCccccccCCCCcccccccccccCCCCC
Q 000869 422 SFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAP-NVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPR 500 (1247)
Q Consensus 422 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 500 (1247)
++++|.|..+. .+..+++|+.+++++| .+..+.+ . +..+.+++.+.+.+|.+. .+..+..+..
T Consensus 146 ~l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~-------------~i~~~~~~~~ 209 (414)
T KOG0531|consen 146 NLSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR-------------EIEGLDLLKK 209 (414)
T ss_pred eeccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh-------------cccchHHHHH
Confidence 99999998775 4667999999999999 7777754 2 467888999998888654 3334444445
Q ss_pred CcEEEEeecCCCCCCchhhccc--cceeeEEecCc
Q 000869 501 LTTLEVHVKNDNILPEGFFARK--LERFKISVGEA 533 (1247)
Q Consensus 501 L~~L~l~~~~~~~~~~~~~~~~--L~~l~i~~~~l 533 (1247)
+..+++..+.+..+........ |+.+.+..+.+
T Consensus 210 l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 210 LVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred HHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence 5555665555544332222222 55555555553
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=1.2e-07 Score=106.96 Aligned_cols=175 Identities=22% Similarity=0.230 Sum_probs=124.5
Q ss_pred cccceEEEccCCccccccCcCCC-CCccEEEccCCCCccccccchhhhc----------CCCCCcEEEccCCCCccCCcc
Q 000869 321 LRKCYAISIRDSSIHELLEGLEC-PQLEFLYMDSNGSSVEINVPEKFFT----------GMKKLKVVDFCRMQFFSLPPS 389 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~n~~~~~~~l~~~~~~----------~l~~Lr~L~Ls~~~i~~lp~~ 389 (1247)
.+.+|++-+.++.+........+ ..|++|..++. ... -..+|. ..-.|.+.++++|.+..+..+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~A----l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDA----LRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHH----HHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 45788888888776653322221 23444443322 110 011111 124588888999999888888
Q ss_pred cccCCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchh-hcCCCCCcEEeccCCCCCcccChhhhcCCCCCCE
Q 000869 390 IDHLLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEE-LGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEE 468 (1247)
Q Consensus 390 l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~ 468 (1247)
+.-++.|+.|+|++|++..+..+..|.+|++|||++|.++.+|.- ...+ +|+.|++++| .++.+ ..+.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh--hhHHhhhhhhc
Confidence 899999999999999999999999999999999999999988852 2233 3999999999 78877 33889999999
Q ss_pred EEeecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCCCC
Q 000869 469 LYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNIL 514 (1247)
Q Consensus 469 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 514 (1247)
|+++.|-+. ....+.-+..|..|+.|.+.+|.+.--
T Consensus 259 LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999988665 223455566677888888888876543
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.94 E-value=0.00013 Score=81.83 Aligned_cols=240 Identities=13% Similarity=0.059 Sum_probs=123.2
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCc-cccch-----HHHHHHHHHHHhcCCeE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVL-QEETE-----SSRASRLHEQLKREEKI 74 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~-----~~~~~~~~~~l~~~~~~ 74 (1247)
.+|+|||++|+.+++..... +.++.... ......+..+...++... --.++ ....+.+...+. +.+.
T Consensus 59 ppG~GKT~la~~ia~~l~~~-----~~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~ 131 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVN-----IRITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRL 131 (328)
T ss_pred CCCccHHHHHHHHHHHhCCC-----eEEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcce
Confidence 47999999999999987532 22222221 111122233333332211 00011 111122233332 5566
Q ss_pred EEEEeCCCCcccchhhccCCCCCCCCcEEEEecCChhhhhhc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHH
Q 000869 75 LIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSM--GSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKST 152 (1247)
Q Consensus 75 LlvlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 152 (1247)
.+|+|+......+.. .++ ..+-|..|+|...+...+ +....+++++++.++..+++...++.... .-.++.
T Consensus 132 ~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~ 204 (328)
T PRK00080 132 DIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEG 204 (328)
T ss_pred eeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 667766554433221 111 235566677755443321 12357899999999999999999854322 234567
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHH-hccCCC
Q 000869 153 ATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFL-LCSLMG 231 (1247)
Q Consensus 153 ~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~-~~a~fp 231 (1247)
+..|++.|+|.|-.+..+...+. .|....+ ...+ . ...-......+...+..|++. .+..+. ....|+
T Consensus 205 ~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~~~I-~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~ 273 (328)
T PRK00080 205 ALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---DGVI-T-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---CCCC-C-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcC
Confidence 89999999999954444433322 2211110 0111 0 000112334445566788877 466665 666676
Q ss_pred CC-cChhHHHHHHHhcCcccccccHHHHHHHHHHHHH-HHhhcceeec
Q 000869 232 NE-IATSDLFKYCMCLGIFKGVDTMENARTNFYALIH-QLRDCFLLLG 277 (1247)
Q Consensus 232 ~~-~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~l~~~ 277 (1247)
.+ +..+.+.... | .....++ +.++ .|++.+|++.
T Consensus 274 ~~~~~~~~~a~~l---g-----~~~~~~~----~~~e~~Li~~~li~~ 309 (328)
T PRK00080 274 GGPVGLDTLAAAL---G-----EERDTIE----DVYEPYLIQQGFIQR 309 (328)
T ss_pred CCceeHHHHHHHH---C-----CCcchHH----HHhhHHHHHcCCccc
Confidence 54 6665553332 1 1112222 2355 7889999964
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=58.48 Aligned_cols=39 Identities=33% Similarity=0.560 Sum_probs=21.4
Q ss_pred CCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCcc
Q 000869 372 KLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDVA 410 (1247)
Q Consensus 372 ~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~ 410 (1247)
+|++|++++|.|+.+|..++++++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666655555556666666666655555443
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=97.89 E-value=5.5e-05 Score=79.53 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=88.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++....+ ...+.|+++..... .. ..+.+.+ .+.-+||+||+
T Consensus 48 ~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~~--------------------~~~~~~~--~~~dlLilDDi 100 (229)
T PRK06893 48 KSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---FS--------------------PAVLENL--EQQDLVCLDDL 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---hh--------------------HHHHhhc--ccCCEEEEeCh
Confidence 6999999999999987644 45678887642100 00 0112222 23458999999
Q ss_pred CCc---ccch-hhccCCCCC-CCCcEEEE-ecCC---------hhhhhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 82 WKR---VDLE-TVGIPFGDD-HRGCKLLL-TARD---------RTVLFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 82 ~~~---~~~~-~l~~~~~~~-~~~~~vli-TtR~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.. .+|+ .+...+... ..|..+|| |++. +.+..++.....++++++++++.++++.+.+.... .
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l 179 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-I 179 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 864 2333 111111111 23455544 4543 34444556677999999999999999999884222 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
.-.+++..-|++.+.|..-.+..+-..+
T Consensus 180 ~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 180 ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2234677888888888776655554433
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.88 E-value=0.00041 Score=77.34 Aligned_cols=240 Identities=14% Similarity=0.068 Sum_probs=122.9
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCc----c--ccchHHHHHHHHHHHhcCCeE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVL----Q--EETESSRASRLHEQLKREEKI 74 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~~~~~l~~~~~~ 74 (1247)
.+|+|||++|++++++.... + ..+..........+ ...+..++... + +.-.....+.+...+. +.+.
T Consensus 38 p~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~ 110 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRL 110 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhhe
Confidence 47999999999999987532 2 22222111112222 22222232211 0 0001112233333333 5666
Q ss_pred EEEEeCCCCcccchhhccCCCCCCCCcEEEEecCChhhhhhc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHH
Q 000869 75 LIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSM--GSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKST 152 (1247)
Q Consensus 75 LlvlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 152 (1247)
.+|+|+.....++.. ..+ +.+-|..|||...+...+ +....+++++++.++..+++.+.++.... .-..+.
T Consensus 111 ~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~a 183 (305)
T TIGR00635 111 DIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEA 183 (305)
T ss_pred eeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHH
Confidence 677777655544432 122 245566777765443321 12457889999999999999998853222 223567
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHH-hccCCC
Q 000869 153 ATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFL-LCSLMG 231 (1247)
Q Consensus 153 ~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~-~~a~fp 231 (1247)
+..|++.++|.|-.+..+...+. .. ........+ . ...-......+...|..++.. .+..+. ..+.++
T Consensus 184 l~~ia~~~~G~pR~~~~ll~~~~-------~~-a~~~~~~~i-t-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~ 252 (305)
T TIGR00635 184 ALEIARRSRGTPRIANRLLRRVR-------DF-AQVRGQKII-N-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQ 252 (305)
T ss_pred HHHHHHHhCCCcchHHHHHHHHH-------HH-HHHcCCCCc-C-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhC
Confidence 78999999999966655444322 10 000011101 0 000011222244556777776 455555 556665
Q ss_pred CC-cChhHHHHHHHhcCcccccccHHHHHHHHHHHHH-HHhhcceeec
Q 000869 232 NE-IATSDLFKYCMCLGIFKGVDTMENARTNFYALIH-QLRDCFLLLG 277 (1247)
Q Consensus 232 ~~-~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~l~~~ 277 (1247)
.+ +..+.+.... |. ........++ .|++.++++.
T Consensus 253 ~~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 253 GGPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred CCcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCccc
Confidence 43 5554443221 11 1122233466 5899999964
No 64
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.83 E-value=6.2e-05 Score=71.86 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHHHhhhcc---CCCeEEEEEcCCccCHHHHHHHHHHHhCCCccc-cchHHHHHHHHHHHhcCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDK---LFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQE-ETESSRASRLHEQLKREEKILII 77 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~Llv 77 (1247)
+|+|||+++++++++..... .-..++|+.+....+...+.+.++..++..... ....+....+.+.+.+.+..+||
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lv 92 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLV 92 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEE
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999875311 124678999988889999999999999887665 44555557777777766678999
Q ss_pred EeCCCCc-c--cchhhccCCCCCCCCcEEEEecCC
Q 000869 78 LDNIWKR-V--DLETVGIPFGDDHRGCKLLLTARD 109 (1247)
Q Consensus 78 lDd~~~~-~--~~~~l~~~~~~~~~~~~vliTtR~ 109 (1247)
+|+++.. . .++.+... .. ..+.+||+..+.
T Consensus 93 iDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 93 IDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp EETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred EeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 9999865 2 23333221 11 556777777655
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=9.7e-06 Score=84.57 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=19.6
Q ss_pred CCCCccEEEccCCCCcccc-ccchhhhcCCCCCcEEEccCC
Q 000869 342 ECPQLEFLYMDSNGSSVEI-NVPEKFFTGMKKLKVVDFCRM 381 (1247)
Q Consensus 342 ~~~~L~~L~l~~n~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~ 381 (1247)
....++.++++||.+...- ......+...+.||..++++-
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 4556666666666554210 011233345555666665543
No 66
>PF13173 AAA_14: AAA domain
Probab=97.81 E-value=3.6e-05 Score=72.69 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+||||++++++++.. ....++|+++.+.........+ ..+.+.+.. .+++.+++||++
T Consensus 11 R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~i~iDEi 70 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELI-KPGKKYIFIDEI 70 (128)
T ss_pred CCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhh-ccCCcEEEEehh
Confidence 58999999999998765 2467888887765542211000 112223322 247889999999
Q ss_pred CCcccchhhccCCCCCCCCcEEEEecCChhhhhh------cCCcceEEcCCCCHHHH
Q 000869 82 WKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFS------MGSEKNFLVDILKEEEA 132 (1247)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~------~~~~~~~~l~~l~~~ea 132 (1247)
+...+|......+...+...+|++|+........ .+....+++.||+-.|-
T Consensus 71 q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9988887766566665567899999988877642 13345788999987763
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.2e-05 Score=96.86 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=84.0
Q ss_pred hcccceEEEccCCcc--ccccC--cCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCC
Q 000869 320 ALRKCYAISIRDSSI--HELLE--GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLN 395 (1247)
Q Consensus 320 ~~~~~~~l~l~~~~i--~~~~~--~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~ 395 (1247)
..++++++++.+... ...+. +.-+|.|++|.+.+-...... ....+..+++|+.||+|+++++.+ ..+++|++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 355778888877432 22222 226888888888875543221 245567888888888888888877 67888888
Q ss_pred CcEEEccCcCCCC---cccccCCCCCcEEEccCCCCCcCchh-------hcCCCCCcEEeccCC
Q 000869 396 LQTLCLDQCILGD---VAIIGKLKNLEILSFSGSGIVKLPEE-------LGQLTKLRHLDLSNC 449 (1247)
Q Consensus 396 L~~L~L~~~~l~~---~~~~~~L~~L~~L~L~~~~i~~lp~~-------i~~L~~L~~L~L~~~ 449 (1247)
|++|.+.+=.++. +..+.+|++|++||+|......-+.- -..|++||.||.|++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 8888877655543 36677888888888887744433311 123667777777665
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=4.3e-06 Score=87.14 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCCccEEEccCCCCcccc-ccchhhhcCCCCCcEEEccCCCCccC--------------CcccccCCCCcEEEccCcCC
Q 000869 342 ECPQLEFLYMDSNGSSVEI-NVPEKFFTGMKKLKVVDFCRMQFFSL--------------PPSIDHLLNLQTLCLDQCIL 406 (1247)
Q Consensus 342 ~~~~L~~L~l~~n~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~~l--------------p~~l~~l~~L~~L~L~~~~l 406 (1247)
.+++|++|+|+.|-+.... .-..+.++.+..|+.|.|.+|.+... ..-+.+-..||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4555555555555443221 11123344455555555555554311 11123334555555555554
Q ss_pred CCc------ccccCCCCCcEEEccCCCCC-----cCchhhcCCCCCcEEeccCCCCCccc----ChhhhcCCCCCCEEEe
Q 000869 407 GDV------AIIGKLKNLEILSFSGSGIV-----KLPEELGQLTKLRHLDLSNCFKLKVI----APNVISSLIRLEELYM 471 (1247)
Q Consensus 407 ~~~------~~~~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~----~~~~~~~L~~L~~L~l 471 (1247)
.+- ..+...+.|+.+.+..|.|. -+-..+..+++|+.|||..| .++.- ....+..+++|++|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecc
Confidence 331 23444455555555555443 11223455555555555555 22211 0122334455555555
Q ss_pred ecCccc
Q 000869 472 SNCFVE 477 (1247)
Q Consensus 472 ~~~~~~ 477 (1247)
+.|.+.
T Consensus 249 ~dcll~ 254 (382)
T KOG1909|consen 249 GDCLLE 254 (382)
T ss_pred cccccc
Confidence 555443
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.1e-05 Score=56.15 Aligned_cols=39 Identities=46% Similarity=0.616 Sum_probs=24.8
Q ss_pred CCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCccc
Q 000869 416 KNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVI 455 (1247)
Q Consensus 416 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~ 455 (1247)
++|++|++++|.|+.+|..+++|++|++|++++| .++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3566777777777777666777777777777776 55555
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=0.0019 Score=74.75 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=108.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||+|+.+++..... | +.++.... ... ..+.+. +........+++.+|++|++
T Consensus 45 pGtGKTtLA~~ia~~~~~~--~---~~l~a~~~-~~~-~ir~ii----------------~~~~~~~~~g~~~vL~IDEi 101 (413)
T PRK13342 45 PGTGKTTLARIIAGATDAP--F---EALSAVTS-GVK-DLREVI----------------EEARQRRSAGRRTILFIDEI 101 (413)
T ss_pred CCCCHHHHHHHHHHHhCCC--E---EEEecccc-cHH-HHHHHH----------------HHHHHhhhcCCceEEEEech
Confidence 7999999999999876422 2 22222111 111 111111 11111122368899999999
Q ss_pred CCc--ccchhhccCCCCCCCCcEEEE--ecCChhhh---hhcCCcceEEcCCCCHHHHHHHHHHHhCCC-CCC-hhhHHH
Q 000869 82 WKR--VDLETVGIPFGDDHRGCKLLL--TARDRTVL---FSMGSEKNFLVDILKEEEAWRLFKLMAGDD-VEN-RELKST 152 (1247)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~vli--TtR~~~~~---~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~-~~~-~~~~~~ 152 (1247)
+.. .+.+.+...+. .+..++| ||.+.... ........+.+.+++.++..+++.+.+... ... .-..+.
T Consensus 102 ~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~a 178 (413)
T PRK13342 102 HRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEA 178 (413)
T ss_pred hhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 865 34444443332 2444444 45544321 122344789999999999999999876321 111 223567
Q ss_pred HHHHHHHcCCCchHHHHHHHHHh---cC-ChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHHhcc
Q 000869 153 ATEVAKACKGLPIALTTIARALR---NK-SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFLLCS 228 (1247)
Q Consensus 153 ~~~i~~~~~g~Plai~~~a~~l~---~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~a 228 (1247)
...|++.++|.+..+..+..... .. +.+.-..++.... ....+..+...++...+.-|...-+++ ...+....
T Consensus 179 l~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~-~~~d~~~~~~~~~isa~~ks~rgsd~~--aal~~l~~ 255 (413)
T PRK13342 179 LDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRA-ARYDKDGDEHYDLISALHKSIRGSDPD--AALYYLAR 255 (413)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhh-hccCCCccHHHHHHHHHHHHHhcCCHH--HHHHHHHH
Confidence 78899999999876655444332 11 4444444444321 111111112223445555555554443 33444444
Q ss_pred CCCCCcChhHHHH
Q 000869 229 LMGNEIATSDLFK 241 (1247)
Q Consensus 229 ~fp~~~~~~~l~~ 241 (1247)
+...|.+...+.+
T Consensus 256 ~l~~G~d~~~i~r 268 (413)
T PRK13342 256 MLEAGEDPLFIAR 268 (413)
T ss_pred HHHcCCCHHHHHH
Confidence 4444444443333
No 71
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.70 E-value=0.00018 Score=76.36 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=87.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.++++.... ...++|+++....+.. ..+...+ .+.-+||+||+
T Consensus 47 ~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~-----------------------~~~~~~~--~~~~lLvIDdi 99 (226)
T TIGR03420 47 SGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD-----------------------PEVLEGL--EQADLVCLDDV 99 (226)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH-----------------------HHHHhhc--ccCCEEEEeCh
Confidence 7999999999999887533 4567788765432110 0111112 22348999999
Q ss_pred CCcc---c-chhhccCCCC-CCCCcEEEEecCChhh---------hhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRV---D-LETVGIPFGD-DHRGCKLLLTARDRTV---------LFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~---~-~~~l~~~~~~-~~~~~~vliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+... . .+.+...+.. ...+.++|+||+.... ...+.....+++++++.++...++...+.... ..
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~ 178 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQ 178 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 8653 1 2223221111 1234478888875431 11222346799999999999999987662111 11
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
-..+....+++.+.|.|..+..+...+
T Consensus 179 ~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 179 LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 234667888888899987777665443
No 72
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.61 E-value=0.0019 Score=80.88 Aligned_cols=210 Identities=16% Similarity=0.172 Sum_probs=126.6
Q ss_pred cCCeEEEEEeCCCCccc-----chhhccCCC---CCCCCcEEEEecCChh--hhhhcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 70 REEKILIILDNIWKRVD-----LETVGIPFG---DDHRGCKLLLTARDRT--VLFSMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 70 ~~~~~LlvlDd~~~~~~-----~~~l~~~~~---~~~~~~~vliTtR~~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
+.++.++|+||++-.+. ++.+..... ......-.++|.+... +.+.......+.|.||+..+.-.++...
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 46799999999964421 111211111 0001122333444431 1123234578999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC-------ChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHH
Q 000869 140 AGDDVENRELKSTATEVAKACKGLPIALTTIARALRNK-------SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSY 212 (1247)
Q Consensus 140 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy 212 (1247)
.+.... ...+....|+++..|+|+-+..+-.++... +...|..-...+.. .+..+++-..+..-.
T Consensus 232 l~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl 303 (849)
T COG3899 232 LGCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARL 303 (849)
T ss_pred hCCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHH
Confidence 975322 234678999999999999888887777543 34445433332221 222334566788999
Q ss_pred cCCCchhHHHHHHhccCCCCCcChhHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhhcceeecc-----C-CCC---c
Q 000869 213 NYLEGEKLKNIFLLCSLMGNEIATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLGG-----D-NNE---K 283 (1247)
Q Consensus 213 ~~L~~~~~~~~~~~~a~fp~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~-----~-~~~---~ 283 (1247)
+.||+. .|+.+...|++...|+.+.|...+-.. .......+++.|.....+-.. . ... +
T Consensus 304 ~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l~~~~-----------~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y 371 (849)
T COG3899 304 QKLPGT-TREVLKAAACIGNRFDLDTLAALAEDS-----------PALEAAALLDALQEGLILPLSETYRFGSNVDIATY 371 (849)
T ss_pred hcCCHH-HHHHHHHHHHhCccCCHHHHHHHHhhc-----------hHHHHHHHHHHhHhhceeccccccccccccchhhH
Confidence 999999 799999999999999988887665321 122223334444443333211 1 111 1
Q ss_pred eeccHHHHHHHHHhhh
Q 000869 284 LSMHDVVRAVAISIAC 299 (1247)
Q Consensus 284 ~~~h~lv~~~~~~~~~ 299 (1247)
--.|+.|++.|.....
T Consensus 372 ~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 372 KFLHDRVQQAAYNLIP 387 (849)
T ss_pred HhhHHHHHHHHhccCc
Confidence 2459999988876544
No 73
>PF14516 AAA_35: AAA-like domain
Probab=97.56 E-value=0.015 Score=65.00 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=97.5
Q ss_pred CccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-----cCHHHH----HHHHHHHhCCCcccc-------ch-HHHHHHHH
Q 000869 3 GIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-----IDIKKI----QQAIAEKLGLVLQEE-------TE-SSRASRLH 65 (1247)
Q Consensus 3 GiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-----~~~~~~----~~~i~~~l~~~~~~~-------~~-~~~~~~~~ 65 (1247)
.+|||++..++.+..+.. .| .++++++... .+...+ ...+.++++....-. .. ..-...+.
T Consensus 41 q~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~ 118 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFE 118 (331)
T ss_pred cCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHH
Confidence 589999999999888753 23 5668887542 234444 445556666543111 11 11112233
Q ss_pred HHHhc--CCeEEEEEeCCCCccc--------chhhccCCCCC----CCCcE--EEEec-CChhhhh----hcCCcceEEc
Q 000869 66 EQLKR--EEKILIILDNIWKRVD--------LETVGIPFGDD----HRGCK--LLLTA-RDRTVLF----SMGSEKNFLV 124 (1247)
Q Consensus 66 ~~l~~--~~~~LlvlDd~~~~~~--------~~~l~~~~~~~----~~~~~--vliTt-R~~~~~~----~~~~~~~~~l 124 (1247)
+.+.. +++.+|+||+||..-. +..++...... ....- |++-+ +.-.... .+..+..++|
T Consensus 119 ~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 119 EYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIEL 198 (331)
T ss_pred HHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeC
Confidence 33332 6899999999986521 11111100000 00111 22222 1111111 1233458889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHhcC
Q 000869 125 DILKEEEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTTIARALRNK 177 (1247)
Q Consensus 125 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 177 (1247)
++|+.+|+..|..++... .......+|.+.++|+|..+..++..+...
T Consensus 199 ~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999998887532 112338999999999999999999999765
No 74
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.54 E-value=0.001 Score=67.96 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCCh-hhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDR-TVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. +..+.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. | .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C--
Confidence 56778999999875 23444544444444455566666544 22221 234568999999999999888887 3 1
Q ss_pred hhhHHHHHHHHHHcCCCch
Q 000869 147 RELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pl 165 (1247)
.++.+..|++.++|.|.
T Consensus 170 --~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --SEEAAELLLALAGGSPG 186 (188)
T ss_pred --CHHHHHHHHHHcCCCcc
Confidence 24678999999999885
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=5e-05 Score=91.76 Aligned_cols=107 Identities=24% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCc--cCCcccccCCCCcEEEccCcCCCCcccccCCCCCcE
Q 000869 343 CPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF--SLPPSIDHLLNLQTLCLDQCILGDVAIIGKLKNLEI 420 (1247)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~L~~L~~ 420 (1247)
-.+|++|++.|...... .++..+...++.|+.|.+++-.+. .+-.-..++++|+.||+++++++.+..+++|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 35788888888665432 446777778899999998887654 233345678888888888888888888888888888
Q ss_pred EEccCCCCCcCc--hhhcCCCCCcEEeccCCC
Q 000869 421 LSFSGSGIVKLP--EELGQLTKLRHLDLSNCF 450 (1247)
Q Consensus 421 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~ 450 (1247)
|.+.+-.++.-. ..+.+|++|++||+|..+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 888776665322 356778888888888753
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00014 Score=69.99 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=58.9
Q ss_pred CccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccc-cCCCCcEEEccCcCCCC---cccccCCCCCcE
Q 000869 345 QLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSID-HLLNLQTLCLDQCILGD---VAIIGKLKNLEI 420 (1247)
Q Consensus 345 ~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~---~~~~~~L~~L~~ 420 (1247)
....++|++|.+. -.+.|..++.|.+|.|.+|.|+.+-+.+. -+++|.+|.|.+|++.. +..+..++.|++
T Consensus 43 ~~d~iDLtdNdl~-----~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-----KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecccccchh-----hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3345566666544 11234566666666666666666644444 34456666666665543 345566667777
Q ss_pred EEccCCCCCcCch----hhcCCCCCcEEeccCC
Q 000869 421 LSFSGSGIVKLPE----ELGQLTKLRHLDLSNC 449 (1247)
Q Consensus 421 L~L~~~~i~~lp~----~i~~L~~L~~L~L~~~ 449 (1247)
|.+-+|.++.-+. -+.++++|++||..+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776654432 2567777777777654
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0013 Score=74.57 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCCh-hhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDR-TVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... .++++...+.......++|++|.+. .+... ......+++++++.++..+.+...+.... .
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-I 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 456799999998763 3455544444444455666665443 33322 23457899999999999999988773211 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.-.++.+..|++.++|.|..+.
T Consensus 197 ~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 197 DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1234567889999999885433
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0007 Score=81.80 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|||+++.. +..++|...+-......++|+ ||....+.. .......|++.+++.++..+.+...+.... .
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-L 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 67889999999876 344554433333333444444 555454443 234567999999999999999988774321 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
....+.+..|++..+|.|..+..+
T Consensus 197 ~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223467888999999988544443
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.48 E-value=3.4e-06 Score=95.58 Aligned_cols=124 Identities=25% Similarity=0.143 Sum_probs=86.5
Q ss_pred cccceEEEccCCccccccCcC-CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEE
Q 000869 321 LRKCYAISIRDSSIHELLEGL-ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTL 399 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L 399 (1247)
|..+..++.+.|.+..+.... -++.|+.|+|++|... .-+.+..+.+|+.|||++|.+..+|..-..--+|+.|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-----~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-----KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-----hhHHHHhcccccccccccchhccccccchhhhhheee
Confidence 445667777777766666555 4678888888888766 2236678888888888888888776522222238888
Q ss_pred EccCcCCCCcccccCCCCCcEEEccCCCCCcCc--hhhcCCCCCcEEeccCC
Q 000869 400 CLDQCILGDVAIIGKLKNLEILSFSGSGIVKLP--EELGQLTKLRHLDLSNC 449 (1247)
Q Consensus 400 ~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~ 449 (1247)
++++|.++.+..+.+|++|+.||+++|-|.... .-++.|..|+.|.|.||
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 888888887777888888888888887665321 22566667777777776
No 80
>PRK08727 hypothetical protein; Validated
Probab=97.48 E-value=0.00083 Score=70.82 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... ...++|+++.+.. ..+ ....+++ ...-+||+||+
T Consensus 50 ~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~~~------~~~-----------------~~~~~~l--~~~dlLiIDDi 102 (233)
T PRK08727 50 AGTGKTHLALALCAAAEQA--GRSSAYLPLQAAA------GRL-----------------RDALEAL--EGRSLVALDGL 102 (233)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEeHHHhh------hhH-----------------HHHHHHH--hcCCEEEEeCc
Confidence 6999999999999987643 3467788743311 111 1122233 24458999999
Q ss_pred CCcc---cchhhccCCCC--CCCCcEEEEecCChhhh---------hhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRV---DLETVGIPFGD--DHRGCKLLLTARDRTVL---------FSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~---~~~~l~~~~~~--~~~~~~vliTtR~~~~~---------~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+... .+......+.. ...|..||+|++...-. .++.....+++++++.++-.+++.+.+.+.. ..
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~ 181 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LA 181 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CC
Confidence 7542 12111111111 12355699999754321 1333456899999999999999998773211 12
Q ss_pred hhHHHHHHHHHHcCCCchHH
Q 000869 148 ELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai 167 (1247)
-.++...-|++.++|-.-.+
T Consensus 182 l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHH
Confidence 23466778888887665444
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0009 Score=78.33 Aligned_cols=97 Identities=9% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCCh-hhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDR-TVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~-~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. ...+++...+.....+.++|++|.+. .+.. ....+..+++.+++.++..+.+...+.....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 56778999999875 34445544443333455666665543 3322 2355679999999999999999888842221
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.-..+....|++..+|-+..+.
T Consensus 196 ~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 196 AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 2234677889999999774443
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.47 E-value=0.0091 Score=71.44 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=84.9
Q ss_pred CCCccHHHHHHHHHHHhhhc---cCCC--eEEEEEcCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHhc--C
Q 000869 1 MGGIGKTTLVKEVARKARKD---KLFD--RVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE--TESSRASRLHEQLKR--E 71 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~---~~f~--~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~--~ 71 (1247)
.+|.|||++++.|+++.... ...+ .+++|++....+...++..|+.++....+.. ...+....++..+.. +
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r 868 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNR 868 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccc
Confidence 47999999999999887532 1222 3678888888889999999999884433221 233455666665532 2
Q ss_pred CeEEEEEeCCCCcc--c---chhhccCCCCCCCCcEEEE--ecCChhhhh--------hcCCcceEEcCCCCHHHHHHHH
Q 000869 72 EKILIILDNIWKRV--D---LETVGIPFGDDHRGCKLLL--TARDRTVLF--------SMGSEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 72 ~~~LlvlDd~~~~~--~---~~~l~~~~~~~~~~~~vli--TtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~ 136 (1247)
...+||||+++... . +-.+.. +. ...+++|+| +|....... +++ ...+..++++.++-.+++
T Consensus 869 ~v~IIILDEID~L~kK~QDVLYnLFR-~~-~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKTQKVLFTLFD-WP-TKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKII 945 (1164)
T ss_pred cceEEEeehHhhhCccHHHHHHHHHH-Hh-hccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHH
Confidence 34689999998652 1 222211 11 123455544 332221111 111 223566899999999999
Q ss_pred HHHhC
Q 000869 137 KLMAG 141 (1247)
Q Consensus 137 ~~~~~ 141 (1247)
..++.
T Consensus 946 k~RAe 950 (1164)
T PTZ00112 946 KERLE 950 (1164)
T ss_pred HHHHH
Confidence 99984
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0011 Score=78.40 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=64.4
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCChhhhh--hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDRTVLF--SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.-++|||+++... .++.+...+..-....++|+||.+..-.. ....+..|.++.++.++..+.+.+.++....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 456688999999763 35555443333334666666666554322 2245678999999999999999998853222
Q ss_pred hhhHHHHHHHHHHcCCCc-hHHHH
Q 000869 147 RELKSTATEVAKACKGLP-IALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~P-lai~~ 169 (1247)
.-..+....|++.++|.. -|+.+
T Consensus 197 ~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223567788999998865 44444
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.002 Score=74.95 Aligned_cols=96 Identities=9% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEE-EecCChhhhhhc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLL-LTARDRTVLFSM-GSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vl-iTtR~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. ..++++...+......+++| +||+...+...+ .....+++.+++.++..+.+.+.+......
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56778999999875 34566654444444455544 466655554422 345689999999999999999988432221
Q ss_pred hhhHHHHHHHHHHcCCCchHH
Q 000869 147 RELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai 167 (1247)
-..++...|++.++|.+.-+
T Consensus 207 -ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 207 -TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 23456788999999977433
No 85
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.41 E-value=0.0003 Score=73.97 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc--cCHHHHHHHH-----HHHhCCCcccc-chH-HHHHHHHHHHhcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT--IDIKKIQQAI-----AEKLGLVLQEE-TES-SRASRLHEQLKREE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~-~~~~~~~~~l~~~~ 72 (1247)
+|+|||||++++++..... +|+.++|+.+... .+..++++.+ +.+++.+.... .-. ............|+
T Consensus 25 ~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 103 (249)
T cd01128 25 PKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGK 103 (249)
T ss_pred CCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7999999999999988754 7999999986554 7899999999 44444321110 001 11122222223489
Q ss_pred eEEEEEeCCCCc
Q 000869 73 KILIILDNIWKR 84 (1247)
Q Consensus 73 ~~LlvlDd~~~~ 84 (1247)
++++++|++..-
T Consensus 104 ~vll~iDei~r~ 115 (249)
T cd01128 104 DVVILLDSITRL 115 (249)
T ss_pred CEEEEEECHHHh
Confidence 999999998653
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00034 Score=76.47 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=54.8
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc--CHHHHHHHHHHHhCCCccccchH------HHHHHHHHHH-hcC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI--DIKKIQQAIAEKLGLVLQEETES------SRASRLHEQL-KRE 71 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~~~~l-~~~ 71 (1247)
.+|+||||||+++++..... +|+.++|+.+.+.. .+.++++.+...+-....+.... ..+.+..+++ ..|
T Consensus 177 ppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G 255 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHG 255 (416)
T ss_pred CCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 37999999999999998864 79999999887666 78888888863221111111111 1111112222 348
Q ss_pred CeEEEEEeCCCCc
Q 000869 72 EKILIILDNIWKR 84 (1247)
Q Consensus 72 ~~~LlvlDd~~~~ 84 (1247)
++++|++|++..-
T Consensus 256 ~dVlL~iDsItR~ 268 (416)
T PRK09376 256 KDVVILLDSITRL 268 (416)
T ss_pred CCEEEEEEChHHH
Confidence 9999999998643
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0011 Score=77.40 Aligned_cols=99 Identities=9% Similarity=0.091 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.-++|||+++.. ..++.+...+..-...++ |++||....+.. ....+..|.++.++.++..+.+.+.+......
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 67779999999876 344555444333233444 556666555543 22446789999999999999999887432211
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
...+....|++.++|.|.....+
T Consensus 203 -~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 203 -HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22456688999999998544433
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=97.37 E-value=0.013 Score=69.55 Aligned_cols=211 Identities=13% Similarity=0.063 Sum_probs=112.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||+|++++++.. |+ ++-++.++..+... +..++....... .+...++.+||+|++
T Consensus 48 pG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~i~~~~~~~--------------sl~~~~~kvIiIDEa 107 (482)
T PRK04195 48 PGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERVAGEAATSG--------------SLFGARRKLILLDEV 107 (482)
T ss_pred CCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHHHHHhhccC--------------cccCCCCeEEEEecC
Confidence 79999999999999863 33 44455555443332 222222211000 011136789999999
Q ss_pred CCccc------chhhccCCCCCCCCcEEEEecCChh-hhh--hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHH
Q 000869 82 WKRVD------LETVGIPFGDDHRGCKLLLTARDRT-VLF--SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKST 152 (1247)
Q Consensus 82 ~~~~~------~~~l~~~~~~~~~~~~vliTtR~~~-~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 152 (1247)
+.... ++++...+. ..+..||+|+.+.. ... .......+++++++..+....+...+...... -..++
T Consensus 108 D~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~ea 184 (482)
T PRK04195 108 DGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEA 184 (482)
T ss_pred cccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHH
Confidence 87521 344433322 12344666664332 111 11345688999999999999998887322111 23467
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcC----ChhHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHcCCCchhHHHHHHhcc
Q 000869 153 ATEVAKACKGLPIALTTIARALRNK----SMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFLLCS 228 (1247)
Q Consensus 153 ~~~i~~~~~g~Plai~~~a~~l~~~----~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~~~~~~~~a 228 (1247)
...|++.++|-.-.+......+... +.+....+.. .+....++.++..-+..=....+...+.
T Consensus 185 L~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~----------~d~~~~if~~l~~i~~~k~~~~a~~~~~--- 251 (482)
T PRK04195 185 LKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR----------RDREESIFDALDAVFKARNADQALEASY--- 251 (482)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----------CCCCCCHHHHHHHHHCCCCHHHHHHHHH---
Confidence 8999999998665444333333322 2222222211 1223456777776665322221333222
Q ss_pred CCCCCcChhHHHHHHHhcCcccc
Q 000869 229 LMGNEIATSDLFKYCMCLGIFKG 251 (1247)
Q Consensus 229 ~fp~~~~~~~l~~~w~~~g~~~~ 251 (1247)
..+++.+ .+-.|+.+.+...
T Consensus 252 --~~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 252 --DVDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred --cccCCHH-HHHHHHHhccccc
Confidence 2234443 4567888888754
No 89
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00027 Score=68.22 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=51.6
Q ss_pred ceEEEccCCccccccCcCCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCC--cccccCCCCcEEEc
Q 000869 324 CYAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLP--PSIDHLLNLQTLCL 401 (1247)
Q Consensus 324 ~~~l~l~~~~i~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~l~~l~~L~~L~L 401 (1247)
...+++.+|.+..++....++.|.+|.+..|++. .+.+.+-..+++|..|.|.+|+|..+- +.+..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt---~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT---RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcce---eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445555555555555555555555555555555 333444344455555555555555431 23445555555555
Q ss_pred cCcCCCCc-----ccccCCCCCcEEEccC
Q 000869 402 DQCILGDV-----AIIGKLKNLEILSFSG 425 (1247)
Q Consensus 402 ~~~~l~~~-----~~~~~L~~L~~L~L~~ 425 (1247)
-+|.+++- -.+.++++|++||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55554432 3355555555555554
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.002 Score=74.65 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=98.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.|++++++.......-..+++++. .++...+...++.. .+..+.+.+++. ..-+||+||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~dvLiIDDi 215 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QNDVLIIDDV 215 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cCCEEEEecc
Confidence 699999999999997764322345666654 34556665555321 123344555443 4458889999
Q ss_pred CCcc---c-chhhccCCCC-CCCCcEEEEecCChh---------hhhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCC-C
Q 000869 82 WKRV---D-LETVGIPFGD-DHRGCKLLLTARDRT---------VLFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVE-N 146 (1247)
Q Consensus 82 ~~~~---~-~~~l~~~~~~-~~~~~~vliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~-~ 146 (1247)
+... . .+.+...+-. ...|..||+|+.... +..++..+-++++++++.++..+++.+.+..... .
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~ 295 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ 295 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC
Confidence 7542 1 1222111111 123446888875432 1224455678889999999999999999842211 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
.-.+++..-|++.++|.|-.+..+...+
T Consensus 296 ~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 296 EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2335788999999999998777766544
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0028 Score=74.25 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEec-CChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTA-RDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTt-R~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. ..++++...+........+|++| +...+.. .......+++.+++.++..+.+.+.+.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 56779999999865 33555554444433444555544 4333322 2244678999999999999999998732111
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.-.++.+..|++.++|.+--+.
T Consensus 194 ~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 194 EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1235678899999999885443
No 92
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0033 Score=70.03 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=89.1
Q ss_pred CCccHHHHHHHHHHHhhh----ccCCCeEEEEEc-CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARK----DKLFDRVVFSEV-SQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~----~~~f~~~~w~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
.|+||||+|+++++..-. +.++|...|... +...+..+ ++++...+.... . .+++-++
T Consensus 35 ~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p---------------~-~~~~kv~ 97 (313)
T PRK05564 35 DGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP---------------Y-EGDKKVI 97 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc---------------c-cCCceEE
Confidence 699999999999997643 234554455432 22233322 222222221110 0 1466677
Q ss_pred EEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChhhhh--hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHH
Q 000869 77 ILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRTVLF--SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKST 152 (1247)
Q Consensus 77 vlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 152 (1247)
|+|+++.. +.++++...+..-..++.+|++|.+..... -...+..+.+.++++++....+.+.... ...+.
T Consensus 98 iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~ 172 (313)
T PRK05564 98 IIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEE 172 (313)
T ss_pred EEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHH
Confidence 77777654 446666666665566888888886664332 1244678999999999998888776531 11344
Q ss_pred HHHHHHHcCCCchHHH
Q 000869 153 ATEVAKACKGLPIALT 168 (1247)
Q Consensus 153 ~~~i~~~~~g~Plai~ 168 (1247)
+..++..++|.|..+.
T Consensus 173 ~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 173 KKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 6788999999886544
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.28 E-value=0.0014 Score=69.16 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=87.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||+||.++++..... -..+.|+++...... ..++.+.+. ..-+||+||+
T Consensus 54 ~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~-----------------------~~~~~~~~~--~~dlliiDdi 106 (235)
T PRK08084 54 EGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWF-----------------------VPEVLEGME--QLSLVCIDNI 106 (235)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhh-----------------------hHHHHHHhh--hCCEEEEeCh
Confidence 6999999999999987643 456778877431110 011222221 1247889999
Q ss_pred CCc---ccchh-hccCCCC-CCCC-cEEEEecCChhhh---------hhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 82 WKR---VDLET-VGIPFGD-DHRG-CKLLLTARDRTVL---------FSMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~~-~~vliTtR~~~~~---------~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.. .+|+. +...+.. ...| .++|+||+.+.-. .++....+++++++++++-.+++.+++.+.. .
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~ 185 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-F 185 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-C
Confidence 764 22321 1111111 1123 3699999765332 2445567999999999999999988773221 2
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
.-.+++..-|++.+.|..-++..+-..+
T Consensus 186 ~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 186 ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2335677888888887765555544333
No 94
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=3.2e-05 Score=69.21 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=67.6
Q ss_pred eEEEccCCccccccCcC----CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEE
Q 000869 325 YAISIRDSSIHELLEGL----ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLC 400 (1247)
Q Consensus 325 ~~l~l~~~~i~~~~~~~----~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~ 400 (1247)
..+++..+.+..+++.. ...+|+..++++|.+. .+|+.+-..++.+..|++++|.|..+|..+..++.||.|+
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34455555554444322 4556666777777665 4466666666677777777777777777777777777777
Q ss_pred ccCcCCCC-cccccCCCCCcEEEccCCCCCcCchh
Q 000869 401 LDQCILGD-VAIIGKLKNLEILSFSGSGIVKLPEE 434 (1247)
Q Consensus 401 L~~~~l~~-~~~~~~L~~L~~L~L~~~~i~~lp~~ 434 (1247)
++.|.+.. +..+..|.+|-+||..++.+..+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77776543 35555566677777666666666644
No 95
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=7e-05 Score=76.16 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=40.7
Q ss_pred CCCCCcEEEccCCCCCc---CchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeecCccccccCCCCcccccc
Q 000869 414 KLKNLEILSFSGSGIVK---LPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINS 490 (1247)
Q Consensus 414 ~L~~L~~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 490 (1247)
...+++.|||.+|.|.. +-.-+.+|++|++|+++.| .+.......-.-+.+|++|.+.|..+.|...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~--------- 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS--------- 138 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhh---------
Confidence 34555555555555542 2222345666666666655 3322111100234566666666665554322
Q ss_pred cccccCCCCCCcEEEEeec
Q 000869 491 RLDELMHLPRLTTLEVHVK 509 (1247)
Q Consensus 491 ~~~~l~~l~~L~~L~l~~~ 509 (1247)
-..+..++.++.|+++.|
T Consensus 139 -~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 139 -TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred -hhhhhcchhhhhhhhccc
Confidence 123445555555555544
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.23 E-value=0.0019 Score=67.24 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=89.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||-|.+++++.......=..|+|+++. ++.+.++..+.. .....+...+. .-=+|++||+
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~--------~~~~~~~~~~~--~~DlL~iDDi 106 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRD--------GEIEEFKDRLR--SADLLIIDDI 106 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHT--------TSHHHHHHHHC--TSSEEEEETG
T ss_pred CCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHc--------ccchhhhhhhh--cCCEEEEecc
Confidence 5999999999999988643222357888643 344444433321 22344555553 5668889999
Q ss_pred CCccc---ch-hhccCCCC-CCCCcEEEEecCChhh---------hhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRVD---LE-TVGIPFGD-DHRGCKLLLTARDRTV---------LFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~~---~~-~l~~~~~~-~~~~~~vliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.... |. .+...+-. ...|.+||+|++...- ..++..+..++++++++++..+++.+.+..... .
T Consensus 107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~ 185 (219)
T PF00308_consen 107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-E 185 (219)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---
T ss_pred hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-C
Confidence 77522 11 11110000 1246789999954432 123455679999999999999999999942111 1
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
-.++++.-|++.+.+..-.+..+-..|
T Consensus 186 l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 186 LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 234677778888777665555544433
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.016 Score=64.84 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=105.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCC-CccccchHHHHHHHHHHHhc-CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGL-VLQEETESSRASRLHEQLKR-EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~~-~~~~LlvlD 79 (1247)
+|.|||+.++.++++.+....=..+++|++....+..+++..|+..++. +.......+....+++.+.. ++.+++|+|
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6999999999999998754211228999999999999999999999963 33345566667777777765 688999999
Q ss_pred CCCCccc-----chhhccCCCCCCCCcE--EEEecCChhhhh--------hcCCcceEEcCCCCHHHHHHHHHHHh--C-
Q 000869 80 NIWKRVD-----LETVGIPFGDDHRGCK--LLLTARDRTVLF--------SMGSEKNFLVDILKEEEAWRLFKLMA--G- 141 (1247)
Q Consensus 80 d~~~~~~-----~~~l~~~~~~~~~~~~--vliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~--~- 141 (1247)
+++.... +..+....... .++ ||..+-+..... .++. ..+..++.+.+|-...+...+ +
T Consensus 131 Eid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~ 207 (366)
T COG1474 131 EVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGF 207 (366)
T ss_pred chhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 9986522 22332211111 333 333444333222 1122 236788999999999999988 2
Q ss_pred -CCCCChhhHHHHHHHHHHcCC-CchHHHHH
Q 000869 142 -DDVENRELKSTATEVAKACKG-LPIALTTI 170 (1247)
Q Consensus 142 -~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 170 (1247)
+.....+.-+.+..++..-+| .-.||.++
T Consensus 208 ~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 208 SAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred cCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222233333445555555554 44555544
No 98
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00017 Score=73.39 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=70.9
Q ss_pred EEEccCCccccccCc----CCCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCccc-ccCCCCcEEE
Q 000869 326 AISIRDSSIHELLEG----LECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSI-DHLLNLQTLC 400 (1247)
Q Consensus 326 ~l~l~~~~i~~~~~~----~~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l-~~l~~L~~L~ 400 (1247)
-+.+.++.|...... ..+.+++.++|.+|.++..-++ ..++.+|++|++|+++.|.+...-.++ ..+++|++|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 445555555544432 2678899999999988744222 356688999999999999776332333 3567999999
Q ss_pred ccCcCCCC--c-ccccCCCCCcEEEccCCCCC
Q 000869 401 LDQCILGD--V-AIIGKLKNLEILSFSGSGIV 429 (1247)
Q Consensus 401 L~~~~l~~--~-~~~~~L~~L~~L~L~~~~i~ 429 (1247)
|.+..+.- . +.+..++.++.|.++.|++.
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 98887643 3 56677888888888877554
No 99
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.14 E-value=0.00034 Score=70.38 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=51.5
Q ss_pred ccccCCCCCcEEEccCCCCC-cCc----hhhcCCCCCcEEeccCCCCCcccChhhhc-------------CCCCCCEEEe
Q 000869 410 AIIGKLKNLEILSFSGSGIV-KLP----EELGQLTKLRHLDLSNCFKLKVIAPNVIS-------------SLIRLEELYM 471 (1247)
Q Consensus 410 ~~~~~L~~L~~L~L~~~~i~-~lp----~~i~~L~~L~~L~L~~~~~l~~~~~~~~~-------------~L~~L~~L~l 471 (1247)
+.+-++++|+..+||.|.+. +.| +-|++-+.|.+|.+++| .+..+..+.|+ +-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 44567777777777777554 333 33566777888888777 55544433333 3345666665
Q ss_pred ecCccccccCCCCcccccccccccCCCCCCcEEEEeecCCC
Q 000869 472 SNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDN 512 (1247)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 512 (1247)
..|.+... ........+....+|+.+.+..|++.
T Consensus 165 grNRleng-------s~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 165 GRNRLENG-------SKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred ccchhccC-------cHHHHHHHHHhhcCceeEEeeecCcC
Confidence 55544300 00111123334456666666666554
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.13 E-value=0.0024 Score=67.56 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||+||+++++..... =..+++++....... + . .. ...-+||+||+
T Consensus 51 ~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~~~~------~---------------------~-~~-~~~~~liiDdi 99 (227)
T PRK08903 51 AGSGRSHLLQALVADASYG--GRNARYLDAASPLLA------F---------------------D-FD-PEAELYAVDDV 99 (227)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEehHHhHHH------H---------------------h-hc-ccCCEEEEeCh
Confidence 6999999999999986432 235667765442110 0 0 11 23447888999
Q ss_pred CCcc--cchhhccCCCC-CCCCc-EEEEecCChhhhh--------hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhh
Q 000869 82 WKRV--DLETVGIPFGD-DHRGC-KLLLTARDRTVLF--------SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENREL 149 (1247)
Q Consensus 82 ~~~~--~~~~l~~~~~~-~~~~~-~vliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 149 (1247)
+... ..+.+...+.. ...+. .||+|++...... ++.....++++++++++-..++.+.+.+.. ..-.
T Consensus 100 ~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~ 178 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLA 178 (227)
T ss_pred hhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCC
Confidence 7542 22222222211 11233 4777776543221 223346889999999988888877653211 1223
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHh
Q 000869 150 KSTATEVAKACKGLPIALTTIARALR 175 (1247)
Q Consensus 150 ~~~~~~i~~~~~g~Plai~~~a~~l~ 175 (1247)
+++...+++...|.+..+..+...+.
T Consensus 179 ~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 179 DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 46788888889999988877766553
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0054 Score=70.84 Aligned_cols=148 Identities=12% Similarity=0.152 Sum_probs=88.4
Q ss_pred CCccHHHHHHHHHHHhhhc-------------------cCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKD-------------------KLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRAS 62 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (1247)
.|+||||+|+.+++...+. ..+..++.++..+.....++- .+.......
T Consensus 44 ~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~----------- 111 (491)
T PRK14964 44 SGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYL----------- 111 (491)
T ss_pred CCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhc-----------
Confidence 6999999999999865321 123345666655444333221 222111000
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHH
Q 000869 63 RLHEQLKREEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 63 ~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
-. .++.-++|+|+++.. +..+++...+..-....++|+ ||....+... ......+++.+++.++..+.+.+
T Consensus 112 ----P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 112 ----PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred ----cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHH
Confidence 00 156778999999865 234555444444334455554 5554555442 24567899999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCchHH
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai 167 (1247)
.+...... -..+....|++.++|.+..+
T Consensus 187 ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 187 IAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 88432221 23466788999999877543
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.12 E-value=0.0045 Score=70.40 Aligned_cols=167 Identities=15% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCH--HHHHH--HHHHHhCCC-ccccchHHHHHHHHHHHhc-----C
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDI--KKIQQ--AIAEKLGLV-LQEETESSRASRLHEQLKR-----E 71 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~~~~l~~-----~ 71 (1247)
+|+|||++|+++++.......-..+++++++..... ..+.. .....++.. .......+.+..+.+.... +
T Consensus 45 ~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (337)
T PRK12402 45 PGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSA 124 (337)
T ss_pred CCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCC
Confidence 699999999999988763321123556665432110 00000 000001100 0000112222333222211 3
Q ss_pred CeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCChh-hhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 72 EKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDRT-VLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 72 ~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
.+-+||+||++... ..+.+...+......+++|+||.... +... ......+++.+++.++..+++.+.+..... .
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~ 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C
Confidence 45589999997652 22333333322334566777764432 2221 133567889999999999999988732221 1
Q ss_pred hhHHHHHHHHHHcCCCchHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
-..+.+..+++.++|.+-.+..
T Consensus 204 ~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 2356788999999887655443
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0058 Score=71.75 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. ...+.+...+.......+ |++||....+... ...+..+++.+++.++..+.+.+.+.....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi- 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI- 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-
Confidence 67789999999865 334555444444333444 4456654444432 345679999999999998888887632221
Q ss_pred hhhHHHHHHHHHHcCCCc-hHHHHH
Q 000869 147 RELKSTATEVAKACKGLP-IALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~P-lai~~~ 170 (1247)
.-..+....|++.++|-+ .|+..+
T Consensus 197 ~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223466788999999866 344443
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.0034 Score=66.21 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||+++++....+ -..++|++..+-. .. ...+.+.+. +-. +||+||+
T Consensus 54 ~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~~~------~~-----------------~~~~~~~~~-~~d-~LiiDDi 106 (234)
T PRK05642 54 DGVGRSHLLQAACLRFEQR--GEPAVYLPLAELL------DR-----------------GPELLDNLE-QYE-LVCLDDL 106 (234)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEeeHHHHH------hh-----------------hHHHHHhhh-hCC-EEEEech
Confidence 6999999999999877533 3568888764311 10 122334443 222 6788999
Q ss_pred CCc---ccchh-hccCCCC-CCCCcEEEEecCChhhhh---------hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKR---VDLET-VGIPFGD-DHRGCKLLLTARDRTVLF---------SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~~~~vliTtR~~~~~~---------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.. ..|+. +...+-. ...|.++|+|++...-.. ++.....++++++++++-.+++..++.+.. ..
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~ 185 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LH 185 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 743 23322 2111111 124667999887543221 223446899999999999999997663211 11
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
-.+++..-|++.+.|-.-.+..+-..|
T Consensus 186 l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 186 LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 224677888888888765555544443
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=97.09 E-value=0.0031 Score=70.41 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=82.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCC-eEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFD-RVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||+|..+++..... .|. .++-++.++..... ..+.+.+.+..... ....++.-++|+|+
T Consensus 43 ~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~-------------~~~~~~~kviiiDE 107 (319)
T PLN03025 43 PGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKMFAQKKV-------------TLPPGRHKIVILDE 107 (319)
T ss_pred CCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHHHHhccc-------------cCCCCCeEEEEEec
Confidence 7999999999999987532 232 23333333332222 12222211100000 00114567899999
Q ss_pred CCCcc--cchhhccCCCCCCCCcEEEEecCCh-hhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 000869 81 IWKRV--DLETVGIPFGDDHRGCKLLLTARDR-TVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTATEV 156 (1247)
Q Consensus 81 ~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~-~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i 156 (1247)
++... ..+++...+......+++++++... .+.. -......++++++++++..+.+...+...... -..+....|
T Consensus 108 ~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i 186 (319)
T PLN03025 108 ADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAI 186 (319)
T ss_pred hhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 98762 2334433333333456666666432 2222 11235689999999999999999888322211 124677889
Q ss_pred HHHcCCCc
Q 000869 157 AKACKGLP 164 (1247)
Q Consensus 157 ~~~~~g~P 164 (1247)
++.++|-.
T Consensus 187 ~~~~~gDl 194 (319)
T PLN03025 187 IFTADGDM 194 (319)
T ss_pred HHHcCCCH
Confidence 99998866
No 106
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0034 Score=74.38 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecC-Chhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTAR-DRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR-~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ..+++...+......+++|++|. ...+.. ..+....|.+..++.++..+.+.+.+.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 567789999998753 23334333332233455555553 333332 2244567888899999999999988842221
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
.-..+....|++.++|.+.-+..
T Consensus 197 ~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 197 AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CcCHHHHHHHHHHhCCCHHHHHH
Confidence 12346788999999988744433
No 107
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0037 Score=74.51 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=63.0
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. ...+++...+..-....+ |++||....+.. .......|.+.+++.++..+.+...+.....
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i- 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI- 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 67789999999876 334444333333223343 555665555543 2244679999999999999999887732111
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
....+....|++.++|.+..+..+
T Consensus 197 ~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 197 PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123456788999999987544333
No 108
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0046 Score=70.47 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEE-EEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKL-LLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~v-liTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++..++|+|+++.. +.++++...+........+ +.||....+.. .......|.+.+++.++..+.+...+.....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi- 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV- 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-
Confidence 56779999999876 3456654444332234443 44555444433 2245678999999999999999888732221
Q ss_pred hhhHHHHHHHHHHcCCCchH
Q 000869 147 RELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pla 166 (1247)
.-..++...|++..+|.+.-
T Consensus 199 ~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CCCHHHHHHHHHHcCChHHH
Confidence 12356788999999998843
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.04 E-value=0.0091 Score=68.37 Aligned_cols=100 Identities=9% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChh-hhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRT-VLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. ...+++...+......+.+|++|.+.. +.. .......+++.+++.++..+.+...+.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668899999765 334445444433334566666665444 222 1234568889999999999999987732211
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIA 171 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a 171 (1247)
.-.++.+..+++.++|.|..+....
T Consensus 195 ~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 1224678889999999886655543
No 110
>PRK09087 hypothetical protein; Validated
Probab=97.03 E-value=0.0031 Score=65.85 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=61.9
Q ss_pred EEEEeCCCCcc-cchhhccCCCC-CCCCcEEEEecCCh---------hhhhhcCCcceEEcCCCCHHHHHHHHHHHhCCC
Q 000869 75 LIILDNIWKRV-DLETVGIPFGD-DHRGCKLLLTARDR---------TVLFSMGSEKNFLVDILKEEEAWRLFKLMAGDD 143 (1247)
Q Consensus 75 LlvlDd~~~~~-~~~~l~~~~~~-~~~~~~vliTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 143 (1247)
+|++||++... +-+.+...+-. ...|..+|+|++.. .+..++.....++++++++++-.+++.+.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 78889997541 11222111111 12366799988742 223344667899999999999999999999432
Q ss_pred CCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 000869 144 VENRELKSTATEVAKACKGLPIALTTIARAL 174 (1247)
Q Consensus 144 ~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 174 (1247)
. ..-.+++..-|++.+.|..-++..+-..|
T Consensus 170 ~-~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 170 Q-LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred C-CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 12235677888888888776666544333
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.004 Score=73.17 Aligned_cols=149 Identities=11% Similarity=0.155 Sum_probs=86.6
Q ss_pred CCccHHHHHHHHHHHhhhcc-------------------CCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDK-------------------LFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRAS 62 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (1247)
.|+||||+|+.+++.....+ .|..++.++......+.++ +.+...+...
T Consensus 47 ~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----------- 114 (509)
T PRK14958 47 RGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----------- 114 (509)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc-----------
Confidence 69999999999999885432 2333455554433333322 2222222110
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHH
Q 000869 63 RLHEQLKREEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 63 ~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
-..++.-++|+|+++.. +..+++...+......+++|+ ||....+... ......+++++++.++..+.+..
T Consensus 115 -----p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 115 -----PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQH 189 (509)
T ss_pred -----cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 11256678999999875 344445444443334455554 5544443322 23456788999999998888877
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCchHHH
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.+...... -..+....|++.++|-+.-+.
T Consensus 190 il~~egi~-~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 190 LLKEENVE-FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHcCCC-CCHHHHHHHHHHcCCcHHHHH
Confidence 77322211 124567788999998774433
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0071 Score=68.47 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCCh-hhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDR-TVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ....+...+.....+..+|++|.+. .+... ......+.+++++.++..+.+.+..+-
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----
Confidence 566688889998762 2233433333333455555555443 33322 245679999999999999888755431
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
..+.+..+++.++|.|....
T Consensus 192 --~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 192 --DPETARRAARASQGHIGRAR 211 (394)
T ss_pred --CHHHHHHHHHHcCCCHHHHH
Confidence 13557888999999986443
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0068 Score=72.21 Aligned_cols=98 Identities=9% Similarity=0.068 Sum_probs=62.8
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEE-EecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLL-LTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vl-iTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.-++|+|+++.. +.++++...+..-....++| +||....+.. .......++++.++.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999976 34555544444333344454 5555444433 23456799999999999999999887422211
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
-..+....|++.++|.+.-+..
T Consensus 203 -ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 -AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 2245678889999987744433
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.028 Score=65.41 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=62.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+.+...+........+|+ ||....+.. .......+++.+++.++....+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 56779999999865 334445444433333344443 443233333 2234578999999999999999888732111
Q ss_pred hhhHHHHHHHHHHcCC-CchHHHHHHHH
Q 000869 147 RELKSTATEVAKACKG-LPIALTTIARA 173 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g-~Plai~~~a~~ 173 (1247)
.-.+++...|++.++| .+.|+..+...
T Consensus 195 ~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 195 EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1234667888887765 45666666543
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0049 Score=73.04 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ..+++...+......+.+|+ ||..+.+... ......++++.++.++..+.+.+.+.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi- 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI- 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 567799999998763 34444444443333454554 5444433321 233568899999999999888887732211
Q ss_pred hhhHHHHHHHHHHcCCCchH
Q 000869 147 RELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pla 166 (1247)
....+....|++.++|.+.-
T Consensus 197 ~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 197 PFDATALQLLARAAAGSMRD 216 (527)
T ss_pred CCCHHHHHHHHHHcCCCHHH
Confidence 12345678899999997743
No 116
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0038 Score=69.63 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=65.7
Q ss_pred HHHHHHHHHHh----cCCeEEEEEeCCCCcc--cchhhccCCCCCCCCcE-EEEecCChhhhh-hcCCcceEEcCCCCHH
Q 000869 59 SRASRLHEQLK----REEKILIILDNIWKRV--DLETVGIPFGDDHRGCK-LLLTARDRTVLF-SMGSEKNFLVDILKEE 130 (1247)
Q Consensus 59 ~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~-vliTtR~~~~~~-~~~~~~~~~l~~l~~~ 130 (1247)
+.+..+.+.+. .+++-++|+|+++... ..+++...+........ |++|++...+.. .......+++.+++.+
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~ 203 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDD 203 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHH
Confidence 34444554444 2577799999998762 23333322222222333 555555443333 2234579999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 000869 131 EAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 131 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
+..+++.+...... -..+.+..+++.++|.|.....
T Consensus 204 ~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 204 ELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred HHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999988542211 2245578899999999975543
No 117
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.94 E-value=0.027 Score=63.41 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=81.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe-EEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR-VVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||+|+.+++...... +.. ++-++.+.......+.. ....+....+ .....+-++|+|+
T Consensus 47 ~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~-~i~~~~~~~~--------------~~~~~~~vviiDe 110 (319)
T PRK00440 47 PGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRN-KIKEFARTAP--------------VGGAPFKIIFLDE 110 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHH-HHHHHHhcCC--------------CCCCCceEEEEeC
Confidence 69999999999999875332 211 22222222222221111 1111100000 0013466899999
Q ss_pred CCCcc--cchhhccCCCCCCCCcEEEEecCCh-hhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 000869 81 IWKRV--DLETVGIPFGDDHRGCKLLLTARDR-TVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTATEV 156 (1247)
Q Consensus 81 ~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~-~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i 156 (1247)
++... ..+.+...+......+++|+++... .+.. .......+++++++.++....+...+..... .-.++.+..+
T Consensus 111 ~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l 189 (319)
T PRK00440 111 ADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAI 189 (319)
T ss_pred cccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 87652 2333433333333456666666332 2211 1123457899999999999999988842221 1235678889
Q ss_pred HHHcCCCchHHH
Q 000869 157 AKACKGLPIALT 168 (1247)
Q Consensus 157 ~~~~~g~Plai~ 168 (1247)
++.++|.+.-+.
T Consensus 190 ~~~~~gd~r~~~ 201 (319)
T PRK00440 190 YYVSEGDMRKAI 201 (319)
T ss_pred HHHcCCCHHHHH
Confidence 999999875533
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0067 Score=71.68 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+.|...+........+|+ |+....+... ......++++.++.++..+.+.+.+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 56779999999876 334555444433223444555 4443444322 234568899999999999999887732211
Q ss_pred hhhHHHHHHHHHHcCCCc-hHHHHHHHH
Q 000869 147 RELKSTATEVAKACKGLP-IALTTIARA 173 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~P-lai~~~a~~ 173 (1247)
.-..+.+..|++..+|.+ .|+..+...
T Consensus 197 ~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 197 DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123467888999999854 566665433
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.0083 Score=70.50 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=58.9
Q ss_pred CeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEE-EecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 72 EKILIILDNIWKR--VDLETVGIPFGDDHRGCKLL-LTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 72 ~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vl-iTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
++-++|+|+++.. +.++++...+........+| +|+....+.. ....+..+++.+++.++....+...+..... .
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-K 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C
Confidence 4456999999875 33444544333323344444 4555444433 2345678999999999999999987732211 1
Q ss_pred hhHHHHHHHHHHcCCCchHH
Q 000869 148 ELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai 167 (1247)
-..+++..+++.++|.+..+
T Consensus 198 Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 198 IEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred CCHHHHHHHHHHcCCcHHHH
Confidence 12456788999999976433
No 120
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.013 Score=65.73 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=66.5
Q ss_pred HHHHHHHHHHh----cCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChh-hhh-hcCCcceEEcCCCCHH
Q 000869 59 SRASRLHEQLK----REEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRT-VLF-SMGSEKNFLVDILKEE 130 (1247)
Q Consensus 59 ~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~-~~~-~~~~~~~~~l~~l~~~ 130 (1247)
+.+.++.+.+. .+++.++|+|+++.. ....++...+..-..++.+|++|.+.. +.. .......+.+.+++.+
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~ 203 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPE 203 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHH
Confidence 34444444443 256778999999875 223344333333334555666665553 322 2345679999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 000869 131 EAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 131 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
+..+++.+..+.. ..+....+++.++|.|.....+
T Consensus 204 ~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 204 DVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999998876421 1122367899999999755443
No 121
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.91 E-value=0.05 Score=57.71 Aligned_cols=142 Identities=21% Similarity=0.256 Sum_probs=88.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||||+-++..-+... ..||..+.......-.+.|.++- ... ..+ .++|.+|.+|.|
T Consensus 171 pG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a-------------q~~-~~l-~krkTilFiDEi 231 (554)
T KOG2028|consen 171 PGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA-------------QNE-KSL-TKRKTILFIDEI 231 (554)
T ss_pred CCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH-------------HHH-Hhh-hcceeEEEeHHh
Confidence 79999999999998766432 45777665443333333333221 000 112 378999999999
Q ss_pred CCc--ccchhhccCCCCCCCCcEEEE--ecCChhhhh---hcCCcceEEcCCCCHHHHHHHHHHHh---CCC------CC
Q 000869 82 WKR--VDLETVGIPFGDDHRGCKLLL--TARDRTVLF---SMGSEKNFLVDILKEEEAWRLFKLMA---GDD------VE 145 (1247)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~vli--TtR~~~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~---~~~------~~ 145 (1247)
..- .+.+.| ++....|.-++| ||.++.... .+..+.++-++.|..++...++.+.. ++. -+
T Consensus 232 HRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~ 308 (554)
T KOG2028|consen 232 HRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLP 308 (554)
T ss_pred hhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCC
Confidence 754 344443 344456776666 888876533 34567799999999999999998854 221 11
Q ss_pred Ch---hhHHHHHHHHHHcCCCch
Q 000869 146 NR---ELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 146 ~~---~~~~~~~~i~~~~~g~Pl 165 (1247)
.+ -...+..-++..++|-..
T Consensus 309 n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 309 NSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CcchhhhHHHHHHHHHhcCchHH
Confidence 11 123556677778888653
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.87 E-value=0.014 Score=61.82 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCccHHHHHHHHHHHhhhccCC----CeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHH-HHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLF----DRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRA-SRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~Ll 76 (1247)
+|+|||++++++++.+.....- -.|+.|......+...++..|+..++.+.......... ..+.+.++.-+--+|
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmL 149 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRML 149 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 5899999999999887643111 14778888899999999999999999887554443333 334444544567788
Q ss_pred EEeCCCCc---------ccchhhccCCCCCCCCcEEEEecCChhhhhh-----cCCcceEEcCCCCHH-HHHHHHHHHh-
Q 000869 77 ILDNIWKR---------VDLETVGIPFGDDHRGCKLLLTARDRTVLFS-----MGSEKNFLVDILKEE-EAWRLFKLMA- 140 (1247)
Q Consensus 77 vlDd~~~~---------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~-----~~~~~~~~l~~l~~~-ea~~l~~~~~- 140 (1247)
|+|.+.+. +.++.+ ..+.+.-.-+-|.+-|++..-+-. .....++.++.-..+ |...|+....
T Consensus 150 IIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 150 IIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred EeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHH
Confidence 99999774 111222 122222334456666644332221 122456677765554 4445554443
Q ss_pred --C-CCCCChhhHHHHHHHHHHcCCCchHHH
Q 000869 141 --G-DDVENRELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 141 --~-~~~~~~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
. .....-...+.+..|.+.++|..--+.
T Consensus 229 ~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 229 ALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1 112223356789999999999874443
No 123
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.86 E-value=0.0062 Score=69.43 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+++++..... | +.+.. ..+... .++ ........+.+......+.+|++|++
T Consensus 165 pGtGKT~lakaia~~l~~~--~-----~~v~~----~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~il~iDEi 224 (364)
T TIGR01242 165 PGTGKTLLAKAVAHETNAT--F-----IRVVG----SELVRK---YIG------EGARLVREIFELAKEKAPSIIFIDEI 224 (364)
T ss_pred CCCCHHHHHHHHHHhCCCC--E-----Eecch----HHHHHH---hhh------HHHHHHHHHHHHHHhcCCcEEEhhhh
Confidence 7999999999999876532 2 22211 111111 111 11122333444444457789999999
Q ss_pred CCcc----------------cchhhccCCC--CCCCCcEEEEecCChhhhh-hc----CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRV----------------DLETVGIPFG--DDHRGCKLLLTARDRTVLF-SM----GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~----------------~~~~l~~~~~--~~~~~~~vliTtR~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+... .+..+...+. ....+.+||.||....... .+ .....+.++..+.++..++|..
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 7541 0111111111 1123667888887544322 11 2245788999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCc
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
++.......+ .....+++.+.|..
T Consensus 305 ~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 305 HTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred HHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 8843222211 12466778887764
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.81 E-value=0.03 Score=68.53 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=57.0
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE--ecCChhh--hh-hcCCcceEEcCCCCHHHHHHHHHHHhCC-
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL--TARDRTV--LF-SMGSEKNFLVDILKEEEAWRLFKLMAGD- 142 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli--TtR~~~~--~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~- 142 (1247)
+++.+||+|+++.. .+.+.+...+ ..|..++| ||+++.. .. .......+.+++++.++...++...+.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 56789999999864 3445554322 23555555 4444321 11 1123568999999999999999887731
Q ss_pred -----CCCChhhHHHHHHHHHHcCCCch
Q 000869 143 -----DVENRELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 143 -----~~~~~~~~~~~~~i~~~~~g~Pl 165 (1247)
.....-..++...|++.+.|..-
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11112234667888888888653
No 125
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.80 E-value=0.0041 Score=60.80 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+++++..... -..+++++.............+... ............++.++|+|++
T Consensus 28 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 28 PGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeCh
Confidence 7999999999999987522 3457778766544332222111100 0111111112257889999999
Q ss_pred CCc-----ccchhhccCCCCC---CCCcEEEEecCChh
Q 000869 82 WKR-----VDLETVGIPFGDD---HRGCKLLLTARDRT 111 (1247)
Q Consensus 82 ~~~-----~~~~~l~~~~~~~---~~~~~vliTtR~~~ 111 (1247)
+.. ..+.......... ..+..||+||....
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 853 2222222222211 35778888887664
No 126
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.78 E-value=0.00019 Score=64.35 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=74.5
Q ss_pred cceEEEccCCccccccCcC--CCCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEE
Q 000869 323 KCYAISIRDSSIHELLEGL--ECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLC 400 (1247)
Q Consensus 323 ~~~~l~l~~~~i~~~~~~~--~~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~ 400 (1247)
++..+++++|..+++|+.+ .++.+++|++++|.+. ++|.+ |..++.||.|+++.|.+...|.-|..|.+|-+|+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis---dvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS---DVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh---hchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4677899999999999755 7789999999999998 77888 7999999999999999999999999999999999
Q ss_pred ccCcCCCCc
Q 000869 401 LDQCILGDV 409 (1247)
Q Consensus 401 L~~~~l~~~ 409 (1247)
..++.+..+
T Consensus 130 s~~na~~ei 138 (177)
T KOG4579|consen 130 SPENARAEI 138 (177)
T ss_pred CCCCccccC
Confidence 999987665
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.018 Score=67.22 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCCh-hhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDR-TVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~-~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+++...+..-...+++|++|.+. .+.. -......+++.+++.++..+.+...+.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 56778999999876 33444444443333456656555543 2222 1234678999999999999999887732221
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
.-.++++..|++.++|.+.-+...
T Consensus 195 ~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 123567889999999988544443
No 128
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.018 Score=63.74 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChh-hhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRT-VLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+++.-.+..-..++.+|++|.+.. +.. .......+.+.+++.+++.+.+.+..+. .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 44555577999875 233333333333234566666665553 332 2345678999999999999999876521 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
..+.+..++..++|.|.....
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHH
Confidence 233456778999999965443
No 129
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.71 E-value=0.0046 Score=68.25 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc--cCHHHHHHHHHH-----HhCCCcccc-chHHHH-HHHHHHHhcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT--IDIKKIQQAIAE-----KLGLVLQEE-TESSRA-SRLHEQLKREE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~-----~l~~~~~~~-~~~~~~-~~~~~~l~~~~ 72 (1247)
+|+|||||++.+++.... ++|+..+|+.+.+. .+..++++.+.. +++...... .-...+ +........|+
T Consensus 177 ~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gk 255 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 255 (415)
T ss_pred CCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999998764 37999999988754 789999999943 333211100 001111 11222223489
Q ss_pred eEEEEEeCCCCc
Q 000869 73 KILIILDNIWKR 84 (1247)
Q Consensus 73 ~~LlvlDd~~~~ 84 (1247)
+++|++|.+..-
T Consensus 256 dVVLlIDEitR~ 267 (415)
T TIGR00767 256 DVVILLDSITRL 267 (415)
T ss_pred CeEEEEEChhHH
Confidence 999999999754
No 130
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.70 E-value=0.015 Score=67.57 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=87.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||+++++.......=..++|++.. ++...+...+... ....+.+.+. ..-+||+||+
T Consensus 145 ~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~dlLiiDDi 208 (405)
T TIGR00362 145 VGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SVDLLLIDDI 208 (405)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hCCEEEEehh
Confidence 6999999999999988643111347777643 2333444443211 1223334443 2348889999
Q ss_pred CCccc----chhhccCCCC-CCCCcEEEEecCChhh---------hhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRVD----LETVGIPFGD-DHRGCKLLLTARDRTV---------LFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~~----~~~l~~~~~~-~~~~~~vliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.... .+.+...+.. ...+..+|+|+....- ..++.....+.+++.+.++-.+++.+.+..... .
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~-~ 287 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL-E 287 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-C
Confidence 85421 1111111100 1134567887754221 112333457899999999999999999843221 2
Q ss_pred hhHHHHHHHHHHcCCCchHHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
-.++....|++...|..-.+.-+
T Consensus 288 l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 288 LPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHH
Confidence 23567788888888876554433
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.016 Score=69.41 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEE-EecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLL-LTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vl-iTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ..+++...+..-...+++| +|++...+... ...+..+++..++.++..+.+.+.+.....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi- 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV- 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 456789999998763 3455544444333455554 45554444432 235678999999999999999988732221
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
.-..+.+..|++.++|.+.-+...
T Consensus 210 ~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 210 EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123467888999999988555443
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.012 Score=67.77 Aligned_cols=98 Identities=7% Similarity=0.032 Sum_probs=63.3
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. +.++.+...+......+.+|+ |++...+... ......+++.+++.++..+.+...+.... .
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-I 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 56778999999865 345555555444444555555 4444444332 12356888999999999999988873211 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
.-..+.+..|++.++|.+--+..
T Consensus 205 ~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 205 SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12356789999999997754433
No 133
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.037 Score=64.29 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=88.5
Q ss_pred CCccHHHHHHHHHHHhhhccCC-CeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLF-DRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+|||.||.++++..... .+ ..++|++.. ++...+...+... ....+.++.. ...-+||+||
T Consensus 139 ~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~-~~~dvLlIDD 202 (440)
T PRK14088 139 VGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYR-KKVDVLLIDD 202 (440)
T ss_pred CCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHH-hcCCEEEEec
Confidence 6999999999999987643 23 357888753 3445555444211 1222333333 3456889999
Q ss_pred CCCccc---c-hhhccCCCC-CCCCcEEEEecC-Chhhhh--------hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 81 IWKRVD---L-ETVGIPFGD-DHRGCKLLLTAR-DRTVLF--------SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 81 ~~~~~~---~-~~l~~~~~~-~~~~~~vliTtR-~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.... . +.+...+.. ...|..||+||. .+.-.. ++.....+++++.+.++-.+++.+.+.... .
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-~ 281 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH-G 281 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC-C
Confidence 975311 1 112111110 112446888874 332211 234456889999999999999999884321 1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
.-.++++.-|++...|.--.+.-
T Consensus 282 ~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 282 ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred CCCHHHHHHHHhccccCHHHHHH
Confidence 12346788888888876544443
No 134
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.064 Score=54.71 Aligned_cols=168 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred CccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccc--hHHHH-HHHHHHHhcCCe-EEEEE
Q 000869 3 GIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEET--ESSRA-SRLHEQLKREEK-ILIIL 78 (1247)
Q Consensus 3 GiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~-~~~~~~l~~~~~-~Llvl 78 (1247)
|.|||.++++....+..+ +..+-+......+...+...+.-.+..+..... ..+.+ ..+..-..+++| +.+++
T Consensus 61 GsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~v 137 (269)
T COG3267 61 GSGKTVLRRALLASLNED---QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMV 137 (269)
T ss_pred CCchhHHHHHHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEee
Confidence 899999999666554422 222222334556777788888888876432221 11222 334444445777 99999
Q ss_pred eCCCCc--ccchhhc--cCCCC-CCCCcEEEEecCCh-------hhhhhcCC--cceEEcCCCCHHHHHHHHHHHhC-CC
Q 000869 79 DNIWKR--VDLETVG--IPFGD-DHRGCKLLLTARDR-------TVLFSMGS--EKNFLVDILKEEEAWRLFKLMAG-DD 143 (1247)
Q Consensus 79 Dd~~~~--~~~~~l~--~~~~~-~~~~~~vliTtR~~-------~~~~~~~~--~~~~~l~~l~~~ea~~l~~~~~~-~~ 143 (1247)
|++.+. ...+.+. ..+-. ....-+|+..-..+ .+....+. ...|++.|++++++..++..+.+ ..
T Consensus 138 dEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~ 217 (269)
T COG3267 138 DEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAG 217 (269)
T ss_pred hhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccC
Confidence 999775 2233221 11111 11111233322111 11111122 22389999999999999988872 21
Q ss_pred -CCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 000869 144 -VENRELKSTATEVAKACKGLPIALTTIARA 173 (1247)
Q Consensus 144 -~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 173 (1247)
...--..+....|.....|.|.+|..++..
T Consensus 218 ~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 218 LPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred CCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 112224567888999999999999887643
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.025 Score=68.15 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +.+.++...+........ |++|++...+... ...+..+++.+++.++..+.+...+.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 56778999999865 334455433333223333 5556655555432 345678999999999999999887632111
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
....+++..|++.++|-+.-+..
T Consensus 196 ~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 196 SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12245688899999997643333
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.031 Score=65.48 Aligned_cols=100 Identities=10% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+++...+........+|+ ||+...+... ......+++.+++.++..+.+...+.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 56779999999865 234444433333333444444 5554443321 234568899999999999999987732111
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIA 171 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a 171 (1247)
....+++..|++.++|.+..+....
T Consensus 197 ~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 197 EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234677889999999775444443
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.60 E-value=0.012 Score=63.50 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=64.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||+|+.+++............++.++.. ++.. ..++. .......+..+. ...+|++|++
T Consensus 51 pGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~---~~~g~------~~~~~~~~~~~a---~~~VL~IDE~ 114 (261)
T TIGR02881 51 PGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVG---EYIGH------TAQKTREVIKKA---LGGVLFIDEA 114 (261)
T ss_pred CCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhh---hhccc------hHHHHHHHHHhc---cCCEEEEech
Confidence 799999999999987643221121122222211 1111 11110 112222333322 2358899999
Q ss_pred CCc----------ccchhhccCCCCCCCCcEEEEecCChhhhh--------hcCCcceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKR----------VDLETVGIPFGDDHRGCKLLLTARDRTVLF--------SMGSEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~----------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
+.. +..+.+...+........+++++....... .-.....+++++++.+|-.+++.+.+.
T Consensus 115 ~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 115 YSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred hhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 752 223444443333333445556654432211 101234688999999999999998884
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.59 E-value=0.024 Score=61.71 Aligned_cols=124 Identities=11% Similarity=0.084 Sum_probs=66.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.+++...........-|+.++. .++ ...+.... ......+.+.. ..-+|++|++
T Consensus 67 pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi 130 (284)
T TIGR02880 67 PGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGGVLFIDEA 130 (284)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCcEEEEech
Confidence 79999999999988776432222212333221 111 11111111 11222333322 3368889999
Q ss_pred CCc-----------ccchhhccCCCCCCCCcEEEEecCChhhhhhc--------CCcceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKR-----------VDLETVGIPFGDDHRGCKLLLTARDRTVLFSM--------GSEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~-----------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~--------~~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
+.. +.++.+...+.....+.+||.++-........ .....+++++++.+|-.+++...+.
T Consensus 131 ~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 131 YYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 732 12233333333344566677776543221111 1245789999999999999998883
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.024 Score=70.31 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE-ecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL-TARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli-TtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.-++|||+++.. +..+.|...+..-...+.+|+ ||+...+... ......|++..++.++..+.+.+.+......
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 56678899999876 334455444444434555554 5444444432 3456789999999999999998877322211
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
...+....|++.++|.+..+.
T Consensus 199 -id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 199 -VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred -CCHHHHHHHHHHcCCCHHHHH
Confidence 234566788999999774433
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.032 Score=66.91 Aligned_cols=94 Identities=7% Similarity=0.030 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEE-EEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKL-LLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~v-liTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++... ..++|...+..-...+.+ ++|++...+.. .......+++.+++.++....+.+.+.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi- 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI- 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 566788999998762 344554444443334444 44555444443 2345778999999999999888887732111
Q ss_pred hhhHHHHHHHHHHcCCCch
Q 000869 147 RELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pl 165 (1247)
.-..+.+..|++.++|..-
T Consensus 205 ~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 1234678889999999654
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.037 Score=66.78 Aligned_cols=99 Identities=12% Similarity=0.056 Sum_probs=61.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEE-EEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKL-LLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~v-liTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..+++...+..-.....+ ++|+....+.. .......+++..++.++..+.+.+.+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 46678899999875 3345554444433334444 44554443333 22456788889999999988888877432111
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
-..+.+..|++.++|.+..+...
T Consensus 200 -is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 -IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12356889999999987544443
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.038 Score=66.95 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=63.7
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEec-CChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTA-RDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTt-R~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. +..+.+...+......+.+|++| +...+.. .......+++..++.++....+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46778999999865 33455544443333455555555 3333332 22345678899999999999998887432211
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTIAR 172 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~a~ 172 (1247)
-..+.+..|++.++|.+..+...-.
T Consensus 199 -i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 199 -LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2346788999999998865554433
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.042 Score=65.43 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +..++|...+..-..... |++||....+... ......|++..++.++..+.+.+.+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 56678899999865 334454444443333444 4455555544432 244678999999999999999887732221
Q ss_pred hhhHHHHHHHHHHcCCCch
Q 000869 147 RELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pl 165 (1247)
.-..+....|++..+|-+.
T Consensus 196 ~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 196 VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 1224567888999999774
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.34 E-value=0.049 Score=64.23 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=87.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|.|||-|+.++++.......-..|+|++... +..++...+.. .....+.+++. .-=+|||||+
T Consensus 323 sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee------f~~el~~al~~--------~~~~~f~~~y~--~~DLLlIDDI 386 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE------FTNEFINSIRD--------GKGDSFRRRYR--EMDILLVDDI 386 (617)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHh--------ccHHHHHHHhh--cCCEEEEehh
Confidence 59999999999999876421124577776533 33333333211 11223444443 3467889999
Q ss_pred CCccc---c-hhhccCCCC-CCCCcEEEEecCChh---------hhhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRVD---L-ETVGIPFGD-DHRGCKLLLTARDRT---------VLFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~~---~-~~l~~~~~~-~~~~~~vliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.... + +.+...+-. ...|..|||||+... +..++.....++++..+.+.-.+++.+++..... .
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-~ 465 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL-N 465 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-C
Confidence 76521 1 111111111 123556888887532 2224456779999999999999999999843221 2
Q ss_pred hhHHHHHHHHHHcCCCchHHH
Q 000869 148 ELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~ 168 (1247)
-..+++.-|++.+.+..-.+.
T Consensus 466 l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 466 APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred CCHHHHHHHHHhccCCHHHHH
Confidence 224667777777766544333
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=96.33 E-value=0.048 Score=59.27 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.+++.......-...-|+.++ ..++.... .|.. ......+.+.. ..-+|++|++
T Consensus 68 pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~~------~~~~~~~l~~a---~ggVLfIDE~ 131 (287)
T CHL00181 68 PGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGHT------APKTKEVLKKA---MGGVLFIDEA 131 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hccc------hHHHHHHHHHc---cCCEEEEEcc
Confidence 7999999999999876432211111133332 11121111 1211 11122233322 3358999999
Q ss_pred CCc-----------ccchhhccCCCCCCCCcEEEEecCChhhhh--------hcCCcceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKR-----------VDLETVGIPFGDDHRGCKLLLTARDRTVLF--------SMGSEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~-----------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
+.. +..+.+...+.....+.+||.++....+.. .-.....+.+++++.+|..+++...+.
T Consensus 132 ~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 132 YYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred chhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 742 122333333333444566777775433211 112345789999999999999998883
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.33 E-value=0.032 Score=65.62 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=88.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||+++++.......-..++|++... +...+...+... ....+.+.+. ..-+||+||+
T Consensus 157 ~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~~dlLiiDDi 220 (450)
T PRK00149 157 VGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--SVDVLLIDDI 220 (450)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--cCCEEEEehh
Confidence 69999999999999987431123467776543 223333333211 1233444443 3458899999
Q ss_pred CCccc----chhhccCCCC-CCCCcEEEEecCChhh---------hhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRVD----LETVGIPFGD-DHRGCKLLLTARDRTV---------LFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~~----~~~l~~~~~~-~~~~~~vliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.... .+.+...+.. ...|..|++||....- ..++.....+++++.+.++-.+++.+.+.... ..
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~ 299 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG-ID 299 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CC
Confidence 75411 1112111100 1124457887765421 11344456899999999999999999984321 12
Q ss_pred hhHHHHHHHHHHcCCCchHHHH
Q 000869 148 ELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
-.+++..-|++.+.|..-.+.-
T Consensus 300 l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 300 LPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred CCHHHHHHHHcCcCCCHHHHHH
Confidence 2346788889988887654443
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.052 Score=65.55 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=63.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEE-EecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLL-LTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vl-iTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. +..++|...+..-...+.+| +||+...+... ...+..+++.+++.++..+.+.+.+.....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi- 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI- 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 46678899999876 33455544444433445544 45555555442 345678999999999999999987743221
Q ss_pred hhhHHHHHHHHHHcCCCchHHH
Q 000869 147 RELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.-..+.+..|++.++|-.--+.
T Consensus 199 ~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 199 TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1224578889999998764433
No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.05 Score=63.32 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEec-CChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTA-RDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTt-R~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+.+-++|+|+++.. +..+.+...+........+|++| +...+... ......++++++++++..+.+...+.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 56778999999765 23344444444333355555555 43333322 245678999999999999988887732211
Q ss_pred hhhHHHHHHHHHHcCCCchH
Q 000869 147 RELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Pla 166 (1247)
.-.++.+..|++.++|.+.-
T Consensus 199 ~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 199 ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred CCCHHHHHHHHHHcCCCHHH
Confidence 12356788999999997643
No 149
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.27 E-value=0.012 Score=55.93 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCC-eEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREE-KILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~LlvlDd 80 (1247)
+|+|||++|+.+++... ..++.++.+...+. ........+..+.+...... +++|++||
T Consensus 7 ~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 7 PGTGKTTLARALAQYLG-----FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp TTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CCCCeeHHHHHHHhhcc-----cccccccccccccc---------------cccccccccccccccccccccceeeeecc
Confidence 79999999999999864 23566665542211 11122333444444443344 89999999
Q ss_pred CCCc
Q 000869 81 IWKR 84 (1247)
Q Consensus 81 ~~~~ 84 (1247)
++..
T Consensus 67 ~d~l 70 (132)
T PF00004_consen 67 IDKL 70 (132)
T ss_dssp GGGT
T ss_pred chhc
Confidence 9765
No 150
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0021 Score=65.29 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=44.9
Q ss_pred CCCCcEEEccCcCCCCcccccCCCCCcEEEccCC--CCC-cCchhhcCCCCCcEEeccCCCCCcc---cChhhhcCCCCC
Q 000869 393 LLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGS--GIV-KLPEELGQLTKLRHLDLSNCFKLKV---IAPNVISSLIRL 466 (1247)
Q Consensus 393 l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---~~~~~~~~L~~L 466 (1247)
+..|+.|.+.++.++.+..+-.|++|++|.++.| ++. .++....++++|++|++++| +++. +.| +.++.+|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcch
Confidence 3445555555555555555666666666666666 332 44444455566666666666 3332 222 4455566
Q ss_pred CEEEeecCccc
Q 000869 467 EELYMSNCFVE 477 (1247)
Q Consensus 467 ~~L~l~~~~~~ 477 (1247)
..|++.+|...
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 66666666443
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.18 Score=55.60 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=89.2
Q ss_pred CCccHHHHHHHHHHHhhhcc-------------CCCeEEEEEcCCccCHHHHHHHHHHHhC--CCccccchHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDK-------------LFDRVVFSEVSQTIDIKKIQQAIAEKLG--LVLQEETESSRASRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~ 66 (1247)
.|+||+++|.++++..-..+ ..+-+.|+.-....+-..+-...+...+ .........+.+.++.+
T Consensus 35 ~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~ 114 (314)
T PRK07399 35 EGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKR 114 (314)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHH
Confidence 59999999999998875432 1223445432110000000001111111 11111223344555555
Q ss_pred HHhc----CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 67 QLKR----EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 67 ~l~~----~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
.+.. +.+-++|+|+++... ...++.-.+..-....-|++|++...+.. -......+++.++++++..+.+.+.
T Consensus 115 ~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 115 FLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred HHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 5542 577889999997752 23333222222223344555555544444 2345789999999999999999987
Q ss_pred hCCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 000869 140 AGDDVENRELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 140 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
....... .....++...+|.|.....+
T Consensus 195 ~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 195 GDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 6321111 12357889999999655543
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.067 Score=63.80 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEec-CChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTA-RDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTt-R~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++.. +.++++...+........+|.+| ....+... ......+++.+++.++..+.+.+.+.....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi- 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI- 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 56678999999876 33555655554434455555544 43333332 234567899999999999999887732221
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
.-.++++..|++..+|.+..+...
T Consensus 197 ~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 197 KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223567788999999977544433
No 153
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.052 Score=62.88 Aligned_cols=144 Identities=11% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||+||+++++..... ...++|++.. .+...+...+... ....+.... ...-+|++||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~------~f~~~~~~~l~~~--------~~~~f~~~~--~~~dvLiIDDi 211 (445)
T PRK12422 150 EGSGKTHLMQAAVHALRES--GGKILYVRSE------LFTEHLVSAIRSG--------EMQRFRQFY--RNVDALFIEDI 211 (445)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEeeHH------HHHHHHHHHHhcc--------hHHHHHHHc--ccCCEEEEcch
Confidence 6999999999999988643 3457777642 3334444443211 112233333 34458888998
Q ss_pred CCccc----chhhccCCCC-CCCCcEEEEecCCh-hh--------hhhcCCcceEEcCCCCHHHHHHHHHHHhCCCCCCh
Q 000869 82 WKRVD----LETVGIPFGD-DHRGCKLLLTARDR-TV--------LFSMGSEKNFLVDILKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 82 ~~~~~----~~~l~~~~~~-~~~~~~vliTtR~~-~~--------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+.... .+.+...+-. ...|..||+||... .. ..++..+..+++.+++.++..+++.+.+.... ..
T Consensus 212 q~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~~ 290 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-IR 290 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 76421 1111111100 01345688888542 11 11334457899999999999999999883221 11
Q ss_pred hhHHHHHHHHHHcCCCc
Q 000869 148 ELKSTATEVAKACKGLP 164 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~P 164 (1247)
-.+++..-|++...+.-
T Consensus 291 l~~evl~~la~~~~~di 307 (445)
T PRK12422 291 IEETALDFLIEALSSNV 307 (445)
T ss_pred CCHHHHHHHHHhcCCCH
Confidence 22355566777776543
No 154
>PRK04132 replication factor C small subunit; Provisional
Probab=96.16 E-value=0.087 Score=65.04 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=91.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+||||+|.+++++.-.++.-..++-+++++......+. ++.+.+....+ +...+.-++|+|++
T Consensus 575 h~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIIDEa 639 (846)
T PRK04132 575 TVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLDEA 639 (846)
T ss_pred CcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEECc
Confidence 4789999999999986432211347788888765555333 33222211000 00124579999999
Q ss_pred CCc--ccchhhccCCCCCCCCcEEEEecCCh-hhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 000869 82 WKR--VDLETVGIPFGDDHRGCKLLLTARDR-TVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTATEVA 157 (1247)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~vliTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~ 157 (1247)
+.. +..+++...+......+++|.+|.+. .+... ...+..+++.+++.++-.+.+...+..... .-..+....|+
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~L~~Ia 718 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAIL 718 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 986 34555544444333455555555444 33222 244679999999999998888877632111 11246788999
Q ss_pred HHcCCCchHH
Q 000869 158 KACKGLPIAL 167 (1247)
Q Consensus 158 ~~~~g~Plai 167 (1247)
+.++|-+...
T Consensus 719 ~~s~GDlR~A 728 (846)
T PRK04132 719 YIAEGDMRRA 728 (846)
T ss_pred HHcCCCHHHH
Confidence 9999987433
No 155
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00049 Score=69.55 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCCccEEEccCCCCccccccchhhhcCCCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc---ccccCCCCCc
Q 000869 343 CPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV---AIIGKLKNLE 419 (1247)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~---~~~~~L~~L~ 419 (1247)
+.+.+.|++-|+.+. .-++..+|+.|.||.||-|.|+.+- .+..+++|+.|.|..|.|.++ .-+.+|++||
T Consensus 18 l~~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 345556666666655 1245677888888888888877763 366777777777777776655 3455666666
Q ss_pred EEEccCC
Q 000869 420 ILSFSGS 426 (1247)
Q Consensus 420 ~L~L~~~ 426 (1247)
.|=|..|
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 6666555
No 156
>PRK06620 hypothetical protein; Validated
Probab=96.05 E-value=0.026 Score=58.42 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCcccch--hhccCCCCCCCCcEEEEecCChhhh-------hhcCCcceEEcCCCCHHHHHHHHHHHhCCC
Q 000869 73 KILIILDNIWKRVDLE--TVGIPFGDDHRGCKLLLTARDRTVL-------FSMGSEKNFLVDILKEEEAWRLFKLMAGDD 143 (1247)
Q Consensus 73 ~~LlvlDd~~~~~~~~--~l~~~~~~~~~~~~vliTtR~~~~~-------~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 143 (1247)
.-++++||++..++.+ .+...+. ..|..+|+|++..... .++....+++++++++++-.+++.+.+.+.
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578889998543211 1111111 3466899988754431 134455689999999999888888887421
Q ss_pred CCChhhHHHHHHHHHHcCCCchHHHHH
Q 000869 144 VENRELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 144 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
. ..-.++++.-|++.+.|---.+..+
T Consensus 164 ~-l~l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 S-VTISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred C-CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 1 1223467777888887765444443
No 157
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0032 Score=64.05 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=31.2
Q ss_pred cCCCCcEEEccCcCCCCc---ccccCCCCCcEEEccCCCCCcCch----hhcCCCCCcEEeccCC
Q 000869 392 HLLNLQTLCLDQCILGDV---AIIGKLKNLEILSFSGSGIVKLPE----ELGQLTKLRHLDLSNC 449 (1247)
Q Consensus 392 ~l~~L~~L~L~~~~l~~~---~~~~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~~~ 449 (1247)
.+++|++|++++|+++.+ ....++.+|..||+..|..+.+-+ -|.-+++|.+|+-...
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 445555555555554433 334455566666666665554421 2455666776654443
No 158
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.096 Score=60.03 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEec-CChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTA-RDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTt-R~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... .++.+...+......+.+|++| +...+.. .......++++++++++....+...+.....
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 456689999997652 3445533333323344455444 4333332 1234568999999999999999887732221
Q ss_pred hhhHHHHHHHHHHcCCCchHH
Q 000869 147 RELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai 167 (1247)
.-..+++..+++.++|-+-.+
T Consensus 186 ~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 186 KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CCCHHHHHHHHHhCCCCHHHH
Confidence 123467888899999866433
No 159
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.94 E-value=0.033 Score=56.24 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=42.3
Q ss_pred EEEecCChhhhhhcCC--cceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 000869 103 LLLTARDRTVLFSMGS--EKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 103 vliTtR~~~~~~~~~~--~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
|=-|||.-.+...+.. ....+++..+.+|-.+++.+.+.--. ..-..+.+.+|++++.|-|-...-+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 4458887665543332 34568999999999999998884222 2234578999999999999544433
No 160
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.00042 Score=70.02 Aligned_cols=105 Identities=30% Similarity=0.383 Sum_probs=63.9
Q ss_pred CCCCcEEEccCcCCCCcccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccCh-hhhcCCCCCCEEEe
Q 000869 393 LLNLQTLCLDQCILGDVAIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAP-NVISSLIRLEELYM 471 (1247)
Q Consensus 393 l~~L~~L~L~~~~l~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~-~~~~~L~~L~~L~l 471 (1247)
+.+.+-|+..||.+.+++.+.+++.|++|.|+-|.|+.+- .+..+++|+.|+|..| .+..+.. .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 4456667777777777777777777777777777777663 3667777777777776 5555421 11456667777776
Q ss_pred ecCccccccCCCCcccccccccccCCCCCCcEEE
Q 000869 472 SNCFVEWEDEGPNSETINSRLDELMHLPRLTTLE 505 (1247)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 505 (1247)
..|... +..+. .-.-..+.-|++|+.|+
T Consensus 96 ~ENPCc----~~ag~--nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCC----GEAGQ--NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcc----cccch--hHHHHHHHHcccchhcc
Confidence 665432 00000 11123455666676665
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.90 E-value=0.073 Score=64.62 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEE--ecCChhhhh-h-cCCcceEEcCCCCHHHHHH
Q 000869 61 ASRLHEQLKREEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLL--TARDRTVLF-S-MGSEKNFLVDILKEEEAWR 134 (1247)
Q Consensus 61 ~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vli--TtR~~~~~~-~-~~~~~~~~l~~l~~~ea~~ 134 (1247)
+..+.+.+. .+++.++-|+.|.. ..|+.+...+....+...|++ ||++..... . ......+.+.+++.+|.++
T Consensus 282 Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHh-hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 344555554 56666665544432 234544444444444444555 666554222 1 1234577889999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 000869 135 LFKLMAGDDVENRELKSTATEVAKACKGLPIALTTIARA 173 (1247)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 173 (1247)
++.+.+...... -..++...|.+....-+.|+..++..
T Consensus 361 Il~~~a~~~~v~-ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVH-LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999988432111 12344445555444445555555433
No 162
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.11 Score=57.05 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCC-hhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARD-RTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~-~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... .-.++.-.+..-..++.+|++|.+ ..+.. .......+.+.+++.+++.+.+.+. +.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC----
Confidence 567899999998762 223332223333345555555544 44433 2345778999999999999888754 21
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
..+.+..++..++|.|+....
T Consensus 187 --~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 187 --SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred --ChHHHHHHHHHcCCCHHHHHH
Confidence 123366789999999975543
No 163
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.89 E-value=0.059 Score=61.72 Aligned_cols=141 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+++++..... .+.+..+ .+.... .+ ........+++......+.+|+||++
T Consensus 174 pGtGKT~lAkaia~~~~~~-----~i~v~~~------~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEi 233 (389)
T PRK03992 174 PGTGKTLLAKAVAHETNAT-----FIRVVGS------ELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEI 233 (389)
T ss_pred CCCChHHHHHHHHHHhCCC-----EEEeehH------HHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEech
Confidence 7999999999999876421 1222211 111110 11 11223344444444457789999999
Q ss_pred CCcc------------c----chhhccCCC--CCCCCcEEEEecCChhhhh-hc----CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRV------------D----LETVGIPFG--DDHRGCKLLLTARDRTVLF-SM----GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~------------~----~~~l~~~~~--~~~~~~~vliTtR~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+... . +..+...+. ....+.+||.||....... .+ .....+.++..+.++..++|+.
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 8641 0 111111111 1123566777876544322 11 1245789999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCc
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
++.......+ .....+++.+.|.-
T Consensus 314 ~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 314 HTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred HhccCCCCCc--CCHHHHHHHcCCCC
Confidence 8843222111 12456677776643
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.84 E-value=0.022 Score=55.16 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+||||+|+.++...... ...+++++.+........... ...................+..........++++|++
T Consensus 11 ~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 11 PGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred CCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 7999999999999887643 235777776654433322222 1111222222233444445555554334599999999
Q ss_pred CCccc
Q 000869 82 WKRVD 86 (1247)
Q Consensus 82 ~~~~~ 86 (1247)
+....
T Consensus 88 ~~~~~ 92 (148)
T smart00382 88 TSLLD 92 (148)
T ss_pred cccCC
Confidence 87643
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.075 Score=59.39 Aligned_cols=135 Identities=23% Similarity=0.337 Sum_probs=80.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh---cCCeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK---REEKILIIL 78 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~~Llvl 78 (1247)
+|+|||+||..++.. ..|+.|=-++..+-. |. .+.....++...+. +..-..||+
T Consensus 547 ~~sGKTaLAA~iA~~----S~FPFvKiiSpe~mi-------------G~-----sEsaKc~~i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 547 PGSGKTALAAKIALS----SDFPFVKIISPEDMI-------------GL-----SESAKCAHIKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CCCChHHHHHHHHhh----cCCCeEEEeChHHcc-------------Cc-----cHHHHHHHHHHHHHHhhcCcceEEEE
Confidence 799999999999976 338766544332211 11 12233333333332 246678999
Q ss_pred eCCCCcccchhhccCCCC---------------CCCCcEEEEecCChhhhhhcCC----cceEEcCCCCH-HHHHHHHHH
Q 000869 79 DNIWKRVDLETVGIPFGD---------------DHRGCKLLLTARDRTVLFSMGS----EKNFLVDILKE-EEAWRLFKL 138 (1247)
Q Consensus 79 Dd~~~~~~~~~l~~~~~~---------------~~~~~~vliTtR~~~~~~~~~~----~~~~~l~~l~~-~ea~~l~~~ 138 (1247)
||++..-+|-.+++.+.. .++.--|+-||..+.+...++- ...+.++.++. ++..+.+..
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 999988887766555443 2333335558888888776543 45788999887 677666665
Q ss_pred HhCCCCCChhhHHHHHHHHHHc
Q 000869 139 MAGDDVENRELKSTATEVAKAC 160 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~ 160 (1247)
.-- ....+.+..+.+...++
T Consensus 685 ~n~--fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 685 LNI--FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccC--CCcchhHHHHHHHhccc
Confidence 541 11223344555555554
No 166
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.71 E-value=0.047 Score=61.21 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH-hcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQL-KREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlDd 80 (1247)
+|+|||++|+++++... ..++.++.+. .... ..+..+.. ..... ..+.+-++|+|+
T Consensus 52 ~G~GKT~la~~l~~~~~-----~~~~~i~~~~-~~~~-~i~~~l~~----------------~~~~~~~~~~~~vliiDe 108 (316)
T PHA02544 52 PGTGKTTVAKALCNEVG-----AEVLFVNGSD-CRID-FVRNRLTR----------------FASTVSLTGGGKVIIIDE 108 (316)
T ss_pred CCCCHHHHHHHHHHHhC-----ccceEeccCc-ccHH-HHHHHHHH----------------HHHhhcccCCCeEEEEEC
Confidence 69999999999998753 1344555544 2221 11111111 00100 014566899999
Q ss_pred CCCc---ccchhhccCCCCCCCCcEEEEecCChhhhh--hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 81 IWKR---VDLETVGIPFGDDHRGCKLLLTARDRTVLF--SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 81 ~~~~---~~~~~l~~~~~~~~~~~~vliTtR~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
++.. +..+.+...+.....++++|+||....... .......+.++..+.++..+++...
T Consensus 109 ~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 109 FDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred cccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 9865 122233222333345778888886543221 1133457777788888877666543
No 167
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.29 Score=53.64 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecC-Chhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTAR-DRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR-~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ...++.-.+..-..++.+|.+|. ...+.. -......+.+.+++.+++.+.+.+...+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc----
Confidence 567788999998762 23333322333334455555544 444443 3356779999999999999988764211
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHH
Q 000869 147 RELKSTATEVAKACKGLPIALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~ 170 (1247)
.+..+++.++|.|+.....
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999765443
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.18 Score=60.56 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
++.-++|+|+++.. ..+.++...+........ |+.||....+... ......++..+++.++..+.+...+......
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778899999865 334455433333223333 4445555444332 2346688899999999999998877322211
Q ss_pred hhhHHHHHHHHHHcCCCchHH
Q 000869 147 RELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai 167 (1247)
-..+.+..|++.++|.+..+
T Consensus 198 -i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 198 -YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 12466788888998877543
No 169
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.62 E-value=0.018 Score=64.93 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=52.4
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh-c-CCeEEEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK-R-EEKILIIL 78 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~-~~~~Llvl 78 (1247)
++|+|||++|+++++.......|+.+.|+.+....+..+++..+... +.... -......++..+.. . ++++++|+
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~--~~~G~f~~~~~~A~~~p~~~~vliI 278 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFR--RKDGIFYNFCQQAKEQPEKKYVFII 278 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCeE--ecCchHHHHHHHHHhcccCCcEEEE
Confidence 58999999999999988765668899999999888877766543211 11100 01111222222222 1 47899999
Q ss_pred eCCCCc
Q 000869 79 DNIWKR 84 (1247)
Q Consensus 79 Dd~~~~ 84 (1247)
|+++..
T Consensus 279 DEINRa 284 (459)
T PRK11331 279 DEINRA 284 (459)
T ss_pred ehhhcc
Confidence 999765
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.60 E-value=0.04 Score=63.09 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|+++++..... | +.+..+. +... .++ .....+..+++....+.+++++||++
T Consensus 226 PGTGKT~LAraIA~el~~~--f---i~V~~se------L~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEI 285 (438)
T PTZ00361 226 PGTGKTLLAKAVANETSAT--F---LRVVGSE------LIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEI 285 (438)
T ss_pred CCCCHHHHHHHHHHhhCCC--E---EEEecch------hhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHH
Confidence 7999999999999976532 3 2222111 1111 011 11222344444444467889999998
Q ss_pred CCccc----------------chhhccCCC--CCCCCcEEEEecCChhhhhh-c----CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRVD----------------LETVGIPFG--DDHRGCKLLLTARDRTVLFS-M----GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~~----------------~~~l~~~~~--~~~~~~~vliTtR~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+.... +-.+...+. ....+.+||+||........ + .....+.++..+.++..++|..
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 64310 001111110 01235678888876655442 1 1245788999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCc
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
++.......+ .....++..+.|.-
T Consensus 366 ~~~k~~l~~d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 366 HTSKMTLAED--VDLEEFIMAKDELS 389 (438)
T ss_pred HHhcCCCCcC--cCHHHHHHhcCCCC
Confidence 8743221111 12345555665543
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.18 Score=55.40 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=82.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe--------EEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh----
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR--------VVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK---- 69 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~--------~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~---- 69 (1247)
.|+||+++|++++...-..+.... +-++..+...|...+ ..........+.+.++.+.+.
T Consensus 33 ~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~~~~~I~id~iR~l~~~~~~~~~ 104 (325)
T PRK06871 33 SGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EPIDNKDIGVDQVREINEKVSQHAQ 104 (325)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------ccccCCCCCHHHHHHHHHHHhhccc
Confidence 699999999999988865321110 001111111111100 000000112334444444433
Q ss_pred cCCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCCh-hhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCC
Q 000869 70 REEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDR-TVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVE 145 (1247)
Q Consensus 70 ~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~ 145 (1247)
.+++-++|+|+++... ...++.-.+-.-..++.+|++|.++ .+... ......+.+.+++.+++.+.+.+..+..
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~-- 182 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE-- 182 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC--
Confidence 2677788899998762 2333333333333455555555544 44332 3457799999999999999998775321
Q ss_pred ChhhHHHHHHHHHHcCCCch
Q 000869 146 NRELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 146 ~~~~~~~~~~i~~~~~g~Pl 165 (1247)
...+...++.++|.|.
T Consensus 183 ----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 ----ISEILTALRINYGRPL 198 (325)
T ss_pred ----hHHHHHHHHHcCCCHH
Confidence 1235566888999995
No 172
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.56 E-value=0.039 Score=57.52 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=86.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe-EEEEEcCCccCHH---HHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR-VVFSEVSQTIDIK---KIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILII 77 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~-~~w~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Llv 77 (1247)
+|.|||+-|++++++.-..+-|+. +.-.+++...... .-.+..++............ ...--.+|
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~-----------~~~fKiiI 134 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYP-----------CPPFKIII 134 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCC-----------CCcceEEE
Confidence 799999999999999876555544 4444554433222 11111111111110000000 01225788
Q ss_pred EeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHH
Q 000869 78 LDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTA 153 (1247)
Q Consensus 78 lDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~ 153 (1247)
||+++.. +.|.++..........++ |+||+--..+.. -......|..++|.+++..+-++..+.++...- ..++.
T Consensus 135 lDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al 213 (346)
T KOG0989|consen 135 LDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDAL 213 (346)
T ss_pred EechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 8999876 668777655555444555 445543222222 223456888999999999999988884333222 34677
Q ss_pred HHHHHHcCCC
Q 000869 154 TEVAKACKGL 163 (1247)
Q Consensus 154 ~~i~~~~~g~ 163 (1247)
..|++.++|-
T Consensus 214 ~~I~~~S~Gd 223 (346)
T KOG0989|consen 214 KLIAKISDGD 223 (346)
T ss_pred HHHHHHcCCc
Confidence 8889888874
No 173
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.48 E-value=0.2 Score=58.55 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||.+|+++++..... .+-++.+... . ..+| .....+.++++......+++|++|++
T Consensus 268 pGTGKTllAkaiA~e~~~~-----~~~l~~~~l~------~---~~vG------ese~~l~~~f~~A~~~~P~IL~IDEI 327 (489)
T CHL00195 268 QGTGKSLTAKAIANDWQLP-----LLRLDVGKLF------G---GIVG------ESESRMRQMIRIAEALSPCILWIDEI 327 (489)
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEEEhHHhc------c---cccC------hHHHHHHHHHHHHHhcCCcEEEehhh
Confidence 7999999999999875421 2223322110 0 0011 12234445555555568999999999
Q ss_pred CCccc--------------chhhccCCCCCCCCcEEEEecCChhhhh----hc-CCcceEEcCCCCHHHHHHHHHHHhCC
Q 000869 82 WKRVD--------------LETVGIPFGDDHRGCKLLLTARDRTVLF----SM-GSEKNFLVDILKEEEAWRLFKLMAGD 142 (1247)
Q Consensus 82 ~~~~~--------------~~~l~~~~~~~~~~~~vliTtR~~~~~~----~~-~~~~~~~l~~l~~~ea~~l~~~~~~~ 142 (1247)
|.... ...+...+.....+-.||.||.+..... +. .....+.++..+.++-.++|..+...
T Consensus 328 D~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 328 DKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 85310 0111111112223444666776554322 11 23467889999999999999998843
Q ss_pred CCCChhhHHHHHHHHHHcCCCc
Q 000869 143 DVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 143 ~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
.............+++.+.|.-
T Consensus 408 ~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 408 FRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCCCcccccCHHHHHhhcCCCC
Confidence 2221111223566777776654
No 174
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.44 E-value=0.21 Score=53.98 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchH----HHH----HHHHH--HHh-c
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETES----SRA----SRLHE--QLK-R 70 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~----~~~~~--~l~-~ 70 (1247)
+|.|||.+.+++.+... ...+|+++-+-++.+.+..+|+.+++..+.+.... +.. ..+.+ ... .
T Consensus 39 sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~ 113 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNR 113 (438)
T ss_pred CCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc
Confidence 69999999999998763 35689999999999999999999995222211111 112 22222 111 2
Q ss_pred CCeEEEEEeCCCCcccchhhccCC----CC-CCCCcEEEEecCChhhhh---hcCCcc--eEEcCCCCHHHHHHHHHHHh
Q 000869 71 EEKILIILDNIWKRVDLETVGIPF----GD-DHRGCKLLLTARDRTVLF---SMGSEK--NFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~~~~~l~~~~----~~-~~~~~~vliTtR~~~~~~---~~~~~~--~~~l~~l~~~ea~~l~~~~~ 140 (1247)
++.++||+||++...+.++...+. .. .....-+|+++-...... .+++.. ++..+..+.+|..+++.+.-
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 468999999999876665431110 00 111233555554433222 134433 55678899999998886655
No 175
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.29 Score=52.59 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=99.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++||++.... | +.+... ++.++.. | +-...+.++++..+.+.++.|.+|.+
T Consensus 194 PGTGKTLLAkAVA~~T~At--F-----IrvvgS----ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 194 PGTGKTLLAKAVANQTDAT--F-----IRVVGS----ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred CCCcHHHHHHHHHhccCce--E-----EEeccH----HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEech
Confidence 7999999999999987654 3 433221 1222221 1 12345566777666678999999999
Q ss_pred CCccc-----------------chhh--ccCCCCCCCCcEEEEecCChhhhh----hcC-CcceEEcCCCCHHHHHHHHH
Q 000869 82 WKRVD-----------------LETV--GIPFGDDHRGCKLLLTARDRTVLF----SMG-SEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 82 ~~~~~-----------------~~~l--~~~~~~~~~~~~vliTtR~~~~~~----~~~-~~~~~~l~~l~~~ea~~l~~ 137 (1247)
|.... ++-+ ..-|.+ ...-|||..|-..++.. +.+ -...++++.-+.+.-.++|+
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 75410 0111 112222 24678999887776654 212 25688888888888889999
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCCCc----hHHHHHHHHHhcC------ChhHHHHHHHH
Q 000869 138 LMAGDDVENRELKSTATEVAKACKGLP----IALTTIARALRNK------SMPQWKTTLQQ 188 (1247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~a~~l~~~------~~~~w~~~l~~ 188 (1247)
-++..-+...+ -....+++.+.|.- .|+++=|++++-+ +.+.+....++
T Consensus 333 IHtrkM~l~~d--vd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 333 IHTRKMNLADD--VDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHhhhccCccC--cCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 88842221111 12355677777664 6777778887522 45555544444
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.57 Score=52.63 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|.|||-|++++++.......=..+++++. +.....++..+.. ...+.+++.. .-=++++||+
T Consensus 122 ~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y---~~dlllIDDi 184 (408)
T COG0593 122 VGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY---SLDLLLIDDI 184 (408)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh---ccCeeeechH
Confidence 489999999999999875421124555542 2333333333211 2223333322 2237888998
Q ss_pred CCccc---c-hhhccCCCC-CCCCcEEEEecCChhh---------hhhcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 82 WKRVD---L-ETVGIPFGD-DHRGCKLLLTARDRTV---------LFSMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 82 ~~~~~---~-~~l~~~~~~-~~~~~~vliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
+-... + +.+...+-. ...|-+||+|++...- ..++..+-.+++.+.+.+...+++.+.+
T Consensus 185 q~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 185 QFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 75421 1 111111111 1234479999855433 2244566799999999999999999987
No 177
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.16 Score=61.17 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcE-EEEecCChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCC
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCK-LLLTARDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~-vliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
+++-++|+|+++... ..+++...+..-...+. |++||....+... ......+++..++.++....+...+......
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 456688999998652 34444433333223444 4456655555442 2346688899999999998888877322211
Q ss_pred hhhHHHHHHHHHHcCCCc-hHHHHH
Q 000869 147 RELKSTATEVAKACKGLP-IALTTI 170 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~P-lai~~~ 170 (1247)
-..+....|++.++|.. .|+..+
T Consensus 198 -i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 -ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23467788899999865 444443
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=95.20 E-value=0.24 Score=60.02 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=78.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|++++...... .+.++.++ +.... .+ .....+..+++......+++|++|++
T Consensus 225 pGTGKT~LAralA~e~~~p-----~i~is~s~------f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 225 PGTGKTLLAKAIAGEAEVP-----FFSISGSE------FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred CCCCHHHHHHHHHHHhCCC-----eeeccHHH------HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecc
Confidence 7999999999999875321 22222221 11100 11 11233445555555578899999999
Q ss_pred CCcc----------------cchhhccCCC--CCCCCcEEEEecCChhhhh----hc-CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRV----------------DLETVGIPFG--DDHRGCKLLLTARDRTVLF----SM-GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~----------------~~~~l~~~~~--~~~~~~~vliTtR~~~~~~----~~-~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+... .+..+...+. ....+-.||.||....... +. .....+.++..+.++-.++++.
T Consensus 285 D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~ 364 (638)
T CHL00176 285 DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKV 364 (638)
T ss_pred hhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHH
Confidence 7531 0112211111 1223556777776654322 11 2246788999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCC
Q 000869 139 MAGDDVENRELKSTATEVAKACKG 162 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g 162 (1247)
++...... .......+++.+.|
T Consensus 365 ~l~~~~~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 365 HARNKKLS--PDVSLELIARRTPG 386 (638)
T ss_pred HHhhcccc--hhHHHHHHHhcCCC
Confidence 98542211 22345778888777
No 179
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.16 E-value=0.21 Score=58.22 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCccHHHHHHHHHHHhhhcc---CCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH----hcCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDK---LFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQL----KREEKI 74 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~ 74 (1247)
+|.|||++|+++++.....- .....+|+++.... +.... .+ .....+..+++.. ..+.++
T Consensus 225 PGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----Ll~ky---vG------ete~~ir~iF~~Ar~~a~~g~p~ 291 (512)
T TIGR03689 225 PGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----LLNKY---VG------ETERQIRLIFQRAREKASDGRPV 291 (512)
T ss_pred CCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----hcccc---cc------hHHHHHHHHHHHHHHHhhcCCCc
Confidence 79999999999999875321 12235555544321 11100 00 0111222233322 235789
Q ss_pred EEEEeCCCCcc---------cc-----hhhccCCCC--CCCCcEEEEecCChhhhh-h-c---CCcceEEcCCCCHHHHH
Q 000869 75 LIILDNIWKRV---------DL-----ETVGIPFGD--DHRGCKLLLTARDRTVLF-S-M---GSEKNFLVDILKEEEAW 133 (1247)
Q Consensus 75 LlvlDd~~~~~---------~~-----~~l~~~~~~--~~~~~~vliTtR~~~~~~-~-~---~~~~~~~l~~l~~~ea~ 133 (1247)
+++||+++... +. ..+...+.. ...+..||.||....... . . +-...++++..+.++..
T Consensus 292 IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 292 IVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred eEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHH
Confidence 99999998531 11 122111111 112444666665544322 1 1 22456899999999999
Q ss_pred HHHHHHhCC
Q 000869 134 RLFKLMAGD 142 (1247)
Q Consensus 134 ~l~~~~~~~ 142 (1247)
++|..+..+
T Consensus 372 ~Il~~~l~~ 380 (512)
T TIGR03689 372 DIFSKYLTD 380 (512)
T ss_pred HHHHHHhhc
Confidence 999999854
No 180
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=0.72 Score=51.46 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=94.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHh--CCCccccchHHHHHHHHHHHhcC-CeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKL--GLVLQEETESSRASRLHEQLKRE-EKILIIL 78 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~~l~~~-~~~Llvl 78 (1247)
+|.|||.....++.+......=..++++++..-....+++..|...+ ....+ ....+..+.+.++.... .-+|+|+
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~-~~~~~~~~~~~~h~~q~k~~~llVl 262 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSP-GTGMQHLEKFEKHTKQSKFMLLLVL 262 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhcccceEEEEe
Confidence 69999999999999887531112458888888778888888887666 11111 11233344555555433 4688899
Q ss_pred eCCCCc-----ccchhhccCCCCCCCCcEEEEe---------cCChhhhhh--cCCcceEEcCCCCHHHHHHHHHHHhCC
Q 000869 79 DNIWKR-----VDLETVGIPFGDDHRGCKLLLT---------ARDRTVLFS--MGSEKNFLVDILKEEEAWRLFKLMAGD 142 (1247)
Q Consensus 79 Dd~~~~-----~~~~~l~~~~~~~~~~~~vliT---------tR~~~~~~~--~~~~~~~~l~~l~~~ea~~l~~~~~~~ 142 (1247)
|..|.. ..+..+ +.|++. +++|+|+. -|-..-... .-....+..++.+.++-.++|.+....
T Consensus 263 DEmD~L~tr~~~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 263 DEMDHLITRSQTVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred chhhHHhhcccceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 998754 112222 223333 34444432 222111111 012346667899999999999999854
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHH
Q 000869 143 DVENRELKSTATEVAKACKGLPIALT 168 (1247)
Q Consensus 143 ~~~~~~~~~~~~~i~~~~~g~Plai~ 168 (1247)
.........+++.+++++.|.---+.
T Consensus 341 ~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 341 ESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred ccccccchHHHHHHHHHhccCchhHH
Confidence 33333344455666666655443333
No 181
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.11 E-value=0.11 Score=57.40 Aligned_cols=82 Identities=11% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe-EEEEEcCC-ccCHHHHHHHHHHHhCCCccccchHH------HHHHHHHHHh-cCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR-VVFSEVSQ-TIDIKKIQQAIAEKLGLVLQEETESS------RASRLHEQLK-REE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~-~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~l~-~~~ 72 (1247)
+|+|||||++.+++..... +.+. ++|+-+++ ..+..++++.+...+.....+..... .+.....++. .|+
T Consensus 142 pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~Gk 220 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGK 220 (380)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999987643 2344 46666654 56788888888877765432222111 1222223332 489
Q ss_pred eEEEEEeCCCCc
Q 000869 73 KILIILDNIWKR 84 (1247)
Q Consensus 73 ~~LlvlDd~~~~ 84 (1247)
+++||+|++...
T Consensus 221 dVVLvlDsltr~ 232 (380)
T PRK12608 221 DVVILLDSLTRL 232 (380)
T ss_pred CEEEEEeCcHHH
Confidence 999999998643
No 182
>PRK08116 hypothetical protein; Validated
Probab=95.11 E-value=0.06 Score=57.93 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... -..++|+++ .+++..+...+.... ......+.+.+. +. =||||||+
T Consensus 123 ~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~-dlLviDDl 187 (268)
T PRK08116 123 VGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-----KEDENEIIRSLV-NA-DLLILDDL 187 (268)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc-----cccHHHHHHHhc-CC-CEEEEecc
Confidence 6999999999999998754 456777764 334555544443211 111223444453 33 38999999
Q ss_pred CCc--ccchh--hccCCCC-CCCCcEEEEecCCh
Q 000869 82 WKR--VDLET--VGIPFGD-DHRGCKLLLTARDR 110 (1247)
Q Consensus 82 ~~~--~~~~~--l~~~~~~-~~~~~~vliTtR~~ 110 (1247)
... .+|.. +...+-. ...+..+||||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 543 23321 1111111 12355699998654
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.07 E-value=0.18 Score=57.50 Aligned_cols=141 Identities=14% Similarity=0.199 Sum_probs=77.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|+++++..... | +.+.. ..+... .++ .....+..++.......+++|++|++
T Consensus 188 pGTGKT~LAkalA~~l~~~--f---i~i~~------s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEI 247 (398)
T PTZ00454 188 PGTGKTMLAKAVAHHTTAT--F---IRVVG------SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEV 247 (398)
T ss_pred CCCCHHHHHHHHHHhcCCC--E---EEEeh------HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECH
Confidence 7999999999999875422 2 22221 111111 111 11223444555555578899999998
Q ss_pred CCcc------------c----chhhccCCC--CCCCCcEEEEecCChhhhhh--c---CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRV------------D----LETVGIPFG--DDHRGCKLLLTARDRTVLFS--M---GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~------------~----~~~l~~~~~--~~~~~~~vliTtR~~~~~~~--~---~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+... . +..+...+. ....+..||.||........ . .-...+.++..+.++...+|..
T Consensus 248 D~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 248 DSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred hhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 7431 0 111111111 11245678888876554331 1 2245788999999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCCc
Q 000869 139 MAGDDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
+........+ ....++++.+.|.-
T Consensus 328 ~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 328 ITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred HHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 7743222211 12456667776654
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.01 E-value=0.13 Score=64.40 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred CCccHHHHHHHHHHHhhhccC---C-Ce-EEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKL---F-DR-VVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~---f-~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
+|+|||++|+.++++.....- + +. ++.++.+. +.. .........+++..+.+.+....+++|
T Consensus 212 pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~------l~a-------~~~~~g~~e~~l~~i~~~~~~~~~~IL 278 (731)
T TIGR02639 212 PGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS------LLA-------GTKYRGDFEERLKAVVSEIEKEPNAIL 278 (731)
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH------Hhh-------hccccchHHHHHHHHHHHHhccCCeEE
Confidence 799999999999998754321 1 22 33333211 110 000011233455566666654568999
Q ss_pred EEeCCCCcc----------cchhhccCCCCCCCCcEEEEecCChh----hhh---hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 77 ILDNIWKRV----------DLETVGIPFGDDHRGCKLLLTARDRT----VLF---SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 77 vlDd~~~~~----------~~~~l~~~~~~~~~~~~vliTtR~~~----~~~---~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
++|+++... +...+..+....+. -++|-+|...+ +.. .......+++++++.+++.+++...
T Consensus 279 fiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~-i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 279 FIDEIHTIVGAGATSGGSMDASNLLKPALSSGK-LRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred EEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-eEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 999987431 11122222222222 23444433211 110 1123458999999999999999976
Q ss_pred h
Q 000869 140 A 140 (1247)
Q Consensus 140 ~ 140 (1247)
.
T Consensus 358 ~ 358 (731)
T TIGR02639 358 K 358 (731)
T ss_pred H
Confidence 6
No 185
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0082 Score=35.96 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=12.4
Q ss_pred CCcEEEccCCCCCcCchhhcC
Q 000869 417 NLEILSFSGSGIVKLPEELGQ 437 (1247)
Q Consensus 417 ~L~~L~L~~~~i~~lp~~i~~ 437 (1247)
+|++||+++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.27 Score=54.90 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCChh-hhh-hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDRT-VLF-SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
+.+-++|+|+++... ..+++...+..-..++.+|.+|.++. +.. -......+++.+++.++..+.+.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 566789999997652 33445444444445666666665443 322 2345778999999999998888653
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.35 Score=53.77 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCC-hhhhhh-cCCcceEEcCCCCH
Q 000869 58 SSRASRLHEQLK----REEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARD-RTVLFS-MGSEKNFLVDILKE 129 (1247)
Q Consensus 58 ~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~-~~~~~~-~~~~~~~~l~~l~~ 129 (1247)
.+.+.++.+.+. .+++-++|+|+++... ...++.-.+-.-..++.+|.+|.+ ..+... ......+.+.+++.
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~ 169 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPE 169 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCH
Confidence 334444444443 2677889999998752 223332222222335555555544 444432 34567889999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchH
Q 000869 130 EEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 130 ~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 166 (1247)
+++.+.+.+..+. ..+.+..+++.++|.|..
T Consensus 170 ~~~~~~L~~~~~~------~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 170 QYALTWLSREVTM------SQDALLAALRLSAGAPGA 200 (334)
T ss_pred HHHHHHHHHccCC------CHHHHHHHHHHcCCCHHH
Confidence 9999888765321 123467889999999953
No 188
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.83 E-value=0.18 Score=63.79 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCccHHHHHHHHHHHhhhccCC-----CeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh-cCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLF-----DRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK-REEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~L 75 (1247)
+|+||||+|+.++++.....-. ..++.++++.-.. .......-.+++..+.+... .+.+++
T Consensus 217 pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------------g~~~~ge~e~~lk~ii~e~~~~~~~~I 283 (852)
T TIGR03345 217 AGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------------GASVKGEFENRLKSVIDEVKASPQPII 283 (852)
T ss_pred CCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------------ccccchHHHHHHHHHHHHHHhcCCCeE
Confidence 7999999999999987533211 1233344432110 00001112234444444443 257899
Q ss_pred EEEeCCCCcc---------cchhhccCCCCCCCCcEEEEecCChhh----hh---hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 76 IILDNIWKRV---------DLETVGIPFGDDHRGCKLLLTARDRTV----LF---SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 76 lvlDd~~~~~---------~~~~l~~~~~~~~~~~~vliTtR~~~~----~~---~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
|++|+++... +...+..+....| .-++|-||...+. .. .......+.+++++.+++.+++...
T Consensus 284 LfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 9999986541 1112322333233 2344445543221 11 1134468999999999999998666
Q ss_pred hCC---CCCChhhHHHHHHHHHHcCC
Q 000869 140 AGD---DVENRELKSTATEVAKACKG 162 (1247)
Q Consensus 140 ~~~---~~~~~~~~~~~~~i~~~~~g 162 (1247)
... ...-.-..++...+++.+.+
T Consensus 363 ~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 363 APVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 521 11111234555666666654
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.81 E-value=0.33 Score=52.30 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKI 40 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 40 (1247)
+|+|||++|+++++... ..++.+++....+..++
T Consensus 30 ~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 30 AGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDL 63 (262)
T ss_pred CCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHH
Confidence 79999999999997432 23556666555444443
No 190
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.62 E-value=0.21 Score=57.25 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=71.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
-++||||+++.+...... ..+++...+......-..+.. ..+...- ..++..++||.|
T Consensus 46 R~~GKTtll~~l~~~~~~-----~~iy~~~~d~~~~~~~l~d~~----------------~~~~~~~-~~~~~yifLDEI 103 (398)
T COG1373 46 RQVGKTTLLKLLIKGLLE-----EIIYINFDDLRLDRIELLDLL----------------RAYIELK-EREKSYIFLDEI 103 (398)
T ss_pred ccccHHHHHHHHHhhCCc-----ceEEEEecchhcchhhHHHHH----------------HHHHHhh-ccCCceEEEecc
Confidence 368999999777655432 266665443322111111111 1111111 126789999999
Q ss_pred CCcccchhhccCCCCCCCCcEEEEecCChhhhh------hcCCcceEEcCCCCHHHHHHHH
Q 000869 82 WKRVDLETVGIPFGDDHRGCKLLLTARDRTVLF------SMGSEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~------~~~~~~~~~l~~l~~~ea~~l~ 136 (1247)
+...+|+.....+.+.+.. +|++|+-+..... ..+....+++-|||-.|-..+-
T Consensus 104 q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 104 QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999887777777766 8888887766533 2245678889999999887654
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.46 E-value=0.094 Score=54.34 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEV 31 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~ 31 (1247)
.|.||||+++.+...... .|+.+++++-
T Consensus 22 sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 699999999999988764 4888887754
No 192
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.41 E-value=0.12 Score=48.84 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=14.5
Q ss_pred chhhhcCCCCCcEEEccCCCCccCC-cccccCCCCcEEEcc
Q 000869 363 PEKFFTGMKKLKVVDFCRMQFFSLP-PSIDHLLNLQTLCLD 402 (1247)
Q Consensus 363 ~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~l~~l~~L~~L~L~ 402 (1247)
....|..+..|+.+++.++ +..++ .++.++.+|+.+.+.
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred Chhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 4444455544555554442 33332 233444444444443
No 193
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.41 E-value=0.27 Score=62.50 Aligned_cols=125 Identities=14% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCccHHHHHHHHHHHhhhccCC----CeEEE-EEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLF----DRVVF-SEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f----~~~~w-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
+|+|||++|+.++.+....+-. +..+| ++.+ .++ + |... .....+++..+.+.+...++++|
T Consensus 209 pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------~l~---a---g~~~-~ge~e~rl~~i~~~~~~~~~~IL 275 (821)
T CHL00095 209 PGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------LLL---A---GTKY-RGEFEERLKRIFDEIQENNNIIL 275 (821)
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------HHh---c---cCCC-ccHHHHHHHHHHHHHHhcCCeEE
Confidence 7999999999999987532211 22333 3321 111 0 1111 12234455666666655678999
Q ss_pred EEeCCCCcc---------cchhhccCCCCCCCCcEEEEecCChhhhh-------hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 77 ILDNIWKRV---------DLETVGIPFGDDHRGCKLLLTARDRTVLF-------SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 77 vlDd~~~~~---------~~~~l~~~~~~~~~~~~vliTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
++|+++... +...+..+....+. -++|-+|....... .......+.+++.+.+++.+++....
T Consensus 276 fiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 276 VIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred EEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 999996331 12223222222332 33444444433211 12344678899999999988887554
No 194
>PRK08181 transposase; Validated
Probab=94.35 E-value=0.056 Score=57.74 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... ...|+|+++ .++...+..... .....+..+.+ .+.-|||+||+
T Consensus 115 ~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~--------~~~~~~~l~~l--~~~dLLIIDDl 176 (269)
T PRK08181 115 PGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR--------ELQLESAIAKL--DKFDLLILDDL 176 (269)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh--------CCcHHHHHHHH--hcCCEEEEecc
Confidence 6999999999999887643 346777764 344444433211 01122334444 35569999999
Q ss_pred CCc--ccc--hhhccCCCCCCCCcEEEEecCChh
Q 000869 82 WKR--VDL--ETVGIPFGDDHRGCKLLLTARDRT 111 (1247)
Q Consensus 82 ~~~--~~~--~~l~~~~~~~~~~~~vliTtR~~~ 111 (1247)
... .++ +.+...+.....+..+||||....
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 654 111 112111111111234999987663
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.69 Score=51.34 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEE-EEecCChhhhh-hcCCcceEEcCCCCH
Q 000869 58 SSRASRLHEQLK----REEKILIILDNIWKR--VDLETVGIPFGDDHRGCKL-LLTARDRTVLF-SMGSEKNFLVDILKE 129 (1247)
Q Consensus 58 ~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~v-liTtR~~~~~~-~~~~~~~~~l~~l~~ 129 (1247)
.+.+.++.+.+. .+++-++|+|+++.. +...++.-.+-.-..++.+ ++|++...+.. .......+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 444555555543 256678889999876 2333443333333345544 45555454443 234567999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHH
Q 000869 130 EEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 130 ~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 169 (1247)
++..+.+.+. +. . + ...++...+|.|.....
T Consensus 194 ~~~~~~L~~~-~~--~--~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 194 EAAAAWLAAQ-GV--A--D----ADALLAEAGGAPLAALA 224 (342)
T ss_pred HHHHHHHHHc-CC--C--h----HHHHHHHcCCCHHHHHH
Confidence 9999988775 21 1 1 12346778999964443
No 196
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.017 Score=34.62 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=13.9
Q ss_pred CCcEEEccCCCCccCCccccc
Q 000869 372 KLKVVDFCRMQFFSLPPSIDH 392 (1247)
Q Consensus 372 ~Lr~L~Ls~~~i~~lp~~l~~ 392 (1247)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777766666544
No 197
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.20 E-value=0.11 Score=49.01 Aligned_cols=106 Identities=15% Similarity=0.335 Sum_probs=66.3
Q ss_pred cchhhhcCCCCCcEEEccCCCCccC-CcccccCCCCcEEEccCcCCCCc--ccccCCCCCcEEEccCCCCCcCch-hhcC
Q 000869 362 VPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLPE-ELGQ 437 (1247)
Q Consensus 362 l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~ 437 (1247)
++...|.++.+|+.+.+.. .+..+ ..+|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4677889999999999885 56666 456888889999999875 6665 5688888899999976 5555543 4667
Q ss_pred CCCCcEEeccCCCCCcccChhhhcCCCCCCEEEeec
Q 000869 438 LTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSN 473 (1247)
Q Consensus 438 L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~~L~l~~ 473 (1247)
+.+|+.+++..+ +..+....+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 889999988653 666666667776 888887754
No 198
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.07 E-value=0.4 Score=57.19 Aligned_cols=147 Identities=22% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|++++...... .+.++.+ .+.... .+ .....+..+++......+++|++|++
T Consensus 97 pGtGKT~la~alA~~~~~~-----~~~i~~~------~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 97 PGTGKTLLAKAVAGEAGVP-----FFSISGS------DFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred CCCCHHHHHHHHHHHcCCC-----eeeccHH------HHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEech
Confidence 7999999999999875321 1222211 111111 11 11233444555555467899999999
Q ss_pred CCccc----------------chhhccCCC--CCCCCcEEEEecCChhhhh----hc-CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRVD----------------LETVGIPFG--DDHRGCKLLLTARDRTVLF----SM-GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~~----------------~~~l~~~~~--~~~~~~~vliTtR~~~~~~----~~-~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+.... +..+...+. ....+..||.||..+.... +. .-...+.++..+.++-.++|..
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 76310 011111110 1123445666775544222 11 2345788999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCC-chHHHHH
Q 000869 139 MAGDDVENRELKSTATEVAKACKGL-PIALTTI 170 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 170 (1247)
++....... ......+++.+.|. +-.|..+
T Consensus 237 ~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 237 HAKNKKLAP--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHhcCCCCc--chhHHHHHHhCCCCCHHHHHHH
Confidence 884322211 12345788888774 3444433
No 199
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.0064 Score=59.18 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=39.1
Q ss_pred ecccceeecccCCCcceeccCCeeeeCCCcCeEEEcccCCccccC-CCCCCCCCcceEEeC
Q 000869 1138 FSKLKRLSLVDLDSLASFCSGNYIFKFPSLEYLFVVGCPKMNIFT-TGELSTPPRVDVMYR 1197 (1247)
Q Consensus 1138 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp-~~~~~~p~L~~l~~~ 1197 (1247)
+++++.|.+.+|..+.+.+.+....-.++|+.|+|++||.|++.- .....+++|+.+.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 667777777777777666655443456777777777777777642 123556667776665
No 200
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.57 Score=53.81 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=78.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++|+++-... ||++..+. +++.. + .+....+..++++.+...+|+|.||.+
T Consensus 554 PGCGKTLlAKAVANEag~N-------FisVKGPE----LlNkY---V------GESErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGAN-------FISVKGPE----LLNKY---V------GESERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred CCccHHHHHHHHhhhccCc-------eEeecCHH----HHHHH---h------hhHHHHHHHHHHHhhcCCCeEEEecch
Confidence 7999999999999985533 67666543 22211 1 223456688999998889999999999
Q ss_pred CCc-------cc------chhhccCCCC--CCCCcEEEEecCChhhhh----hcCC-cceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKR-------VD------LETVGIPFGD--DHRGCKLLLTARDRTVLF----SMGS-EKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~-------~~------~~~l~~~~~~--~~~~~~vliTtR~~~~~~----~~~~-~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
|.. .. +.++..-+-. ...|-.||-.|-.+++-. +.+. ...+-|+.-..+|-..+++..+.
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 753 11 1222222111 234666777776666533 1122 34666788888999999999885
No 201
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.62 E-value=0.24 Score=51.50 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQ 42 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 42 (1247)
+|+|||++|.+++...... -..++|++... .+...+.+
T Consensus 21 ~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 21 PGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 7999999999999876533 57899999976 55544433
No 202
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.0079 Score=58.55 Aligned_cols=67 Identities=24% Similarity=0.126 Sum_probs=41.2
Q ss_pred cccccEEEEecCCCcccccchHHHhhcCCccEEEecCCCcceeeccCCCcccccccccccceeeecccccch
Q 000869 971 FGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDGCSCKEILSNDGHLDKHGGKLAQIKSLRLVRLNDLN 1042 (1247)
Q Consensus 971 ~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 1042 (1247)
+.+++.|.+.+|..+.+.....+-+..++|+.|+|++|+.|++.. -+++..+++|+.|.|.+.+...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-----L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-----LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-----HHHHHHhhhhHHHHhcCchhhh
Confidence 456777777777777765444444455677777777777777321 2223346666666666665543
No 203
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.6 Score=54.23 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=87.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCc-----cccchHHHHHHHHHHHh----cCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVL-----QEETESSRASRLHEQLK----REE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~----~~~ 72 (1247)
-|+||||+|+-+++.....+.-+ ..+...=..-+.|...--.+. -.....+.++++.+... .++
T Consensus 47 RGvGKTt~Ari~AkalNC~~~~~-------~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r 119 (515)
T COG2812 47 RGVGKTTIARILAKALNCENGPT-------AEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR 119 (515)
T ss_pred CCcCchhHHHHHHHHhcCCCCCC-------CCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence 49999999999999886543111 111111111122221100000 01112334444554443 256
Q ss_pred eEEEEEeCCCCc--ccchhhccCCCCCCCCcE-EEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHHHHhCCCCCChh
Q 000869 73 KILIILDNIWKR--VDLETVGIPFGDDHRGCK-LLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFKLMAGDDVENRE 148 (1247)
Q Consensus 73 ~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~-vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~ 148 (1247)
-=+.|+|.|+-. ..|.++.-.+..-....+ |+.||-...+.. ....+..|.++.++.++-...+...+...... -
T Consensus 120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-~ 198 (515)
T COG2812 120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-I 198 (515)
T ss_pred ceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc-c
Confidence 678899999765 445555433333233334 445665555544 34567899999999999999998888533222 2
Q ss_pred hHHHHHHHHHHcCCCch
Q 000869 149 LKSTATEVAKACKGLPI 165 (1247)
Q Consensus 149 ~~~~~~~i~~~~~g~Pl 165 (1247)
..++..-|++..+|...
T Consensus 199 e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 199 EEDALSLIARAAEGSLR 215 (515)
T ss_pred CHHHHHHHHHHcCCChh
Confidence 34667777877777653
No 204
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.49 E-value=0.38 Score=51.44 Aligned_cols=48 Identities=33% Similarity=0.512 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHHhhhcc----CCCeEEEEEcCCccCHHHHHHHHHHHhCC
Q 000869 2 GGIGKTTLVKEVARKARKDK----LFDRVVFSEVSQTIDIKKIQQAIAEKLGL 50 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 50 (1247)
+|+|||+||.+++-...... .=..|+||+....++...+. +|++..+.
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 79999999998876543221 12359999999888877664 46666554
No 205
>PRK10536 hypothetical protein; Provisional
Probab=93.45 E-value=0.22 Score=51.97 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFS 29 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~ 29 (1247)
+|.|||+||.+++.+.-..+.|+.++-.
T Consensus 83 aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 83 AGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 7999999999999864323447666554
No 206
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.44 E-value=0.17 Score=51.42 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 000869 1 MGGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~ 20 (1247)
.+|+|||++++++++.....
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999998866
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.35 E-value=0.35 Score=47.62 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred CCccHHHHHHHHHHHhhhccC------------------CCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKL------------------FDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASR 63 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~------------------f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 63 (1247)
.|+||+++|.++++..-.... ...+.|+.-..... .-..+.+.+
T Consensus 28 ~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~------------------~i~i~~ir~ 89 (162)
T PF13177_consen 28 SGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK------------------SIKIDQIRE 89 (162)
T ss_dssp TTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS------------------SBSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc------------------hhhHHHHHH
Confidence 599999999999998855332 22344554332200 011222333
Q ss_pred HHHHHh----cCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChhh-hh-hcCCcceEEcCCCC
Q 000869 64 LHEQLK----REEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRTV-LF-SMGSEKNFLVDILK 128 (1247)
Q Consensus 64 ~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~~-~~-~~~~~~~~~l~~l~ 128 (1247)
+...+. .+++-++|+|+++.. +...++.-.+-.-..++++|++|++..- .. -......+.+.+++
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred HHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 333322 246788999999875 3344554444444567888888877653 22 23456677776654
No 208
>PRK06921 hypothetical protein; Provisional
Probab=93.34 E-value=0.15 Score=54.70 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||.++++....+. -..|+|++.. ++...+...+ .......+.+ ..--|||+||+
T Consensus 126 ~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~--~~~dlLiIDDl 186 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRM--KKVEVLFIDDL 186 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHh--cCCCEEEEecc
Confidence 69999999999999876431 3557787752 2223332221 1122233444 35679999999
Q ss_pred C
Q 000869 82 W 82 (1247)
Q Consensus 82 ~ 82 (1247)
.
T Consensus 187 ~ 187 (266)
T PRK06921 187 F 187 (266)
T ss_pred c
Confidence 3
No 209
>PRK06526 transposase; Provisional
Probab=93.34 E-value=0.083 Score=56.13 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... .+ .|+|++. .++...+..... . .........+ .+.-+||+||+
T Consensus 107 ~GtGKThLa~al~~~a~~~-g~-~v~f~t~------~~l~~~l~~~~~----~----~~~~~~l~~l--~~~dlLIIDD~ 168 (254)
T PRK06526 107 PGTGKTHLAIGLGIRACQA-GH-RVLFATA------AQWVARLAAAHH----A----GRLQAELVKL--GRYPLLIVDEV 168 (254)
T ss_pred CCCchHHHHHHHHHHHHHC-CC-chhhhhH------HHHHHHHHHHHh----c----CcHHHHHHHh--ccCCEEEEccc
Confidence 7999999999999887643 22 4555433 334444432210 0 1112222333 34568999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 169 g~~ 171 (254)
T PRK06526 169 GYI 171 (254)
T ss_pred ccC
Confidence 754
No 210
>PTZ00202 tuzin; Provisional
Probab=93.29 E-value=0.34 Score=54.03 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=72.6
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh----c-CCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK----R-EEKIL 75 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~-~~~~L 75 (1247)
.+|+||||+++.++.... + ..++++.. +..++++.++..||.+.. ....+....+.+.+. . |++.+
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPV 364 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPL 364 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 479999999999996643 1 24444444 679999999999997432 222333333333333 3 67788
Q ss_pred EEEeCCCCc--c-cchhhccCCCCCCCCcEEEEecCChhhh--h-hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 76 IILDNIWKR--V-DLETVGIPFGDDHRGCKLLLTARDRTVL--F-SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 76 lvlDd~~~~--~-~~~~l~~~~~~~~~~~~vliTtR~~~~~--~-~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
||+-=-+.. . .+.... .+.--..-|.|++----+.+- . ....-..|-+++|+.++|.+......
T Consensus 365 LII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 365 LVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred EEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 887432221 1 111100 111112345566533222111 1 12334578899999999988776554
No 211
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.29 Score=53.67 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=53.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHhcCCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE--TESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
+|||||||..+++.+...+ - .|.||+-.+... -.+--+++|+...... -.....+.+.+.+...++-++|+|
T Consensus 102 PGIGKSTLLLQva~~lA~~--~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKR--G-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred CCCCHHHHHHHHHHHHHhc--C-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 7999999999999998855 2 899997554332 2334467777544322 233344566666666899999999
Q ss_pred CCCCc
Q 000869 80 NIWKR 84 (1247)
Q Consensus 80 d~~~~ 84 (1247)
.++..
T Consensus 176 SIQT~ 180 (456)
T COG1066 176 SIQTL 180 (456)
T ss_pred cccee
Confidence 99754
No 212
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.17 E-value=0.37 Score=51.30 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHhhhccC----CCeEEEEEcCCccCHHHHHHHHHHHhCCCccc----------c---chHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKL----FDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQE----------E---TESSRASRL 64 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~----------~---~~~~~~~~~ 64 (1247)
+|+|||++|.+++........ -..++|++....++...+ .++++..+..... . ........+
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~l 106 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEEL 106 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHHHHHHHHHHH
Confidence 799999999999865432211 267999998886665433 3333333321110 0 011122333
Q ss_pred HHHHhcC-CeEEEEEeCCC
Q 000869 65 HEQLKRE-EKILIILDNIW 82 (1247)
Q Consensus 65 ~~~l~~~-~~~LlvlDd~~ 82 (1247)
...+.+. +.-++|+|.+.
T Consensus 107 ~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 107 EAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHhhcCCeeEEEEeCcH
Confidence 3444444 67788888875
No 213
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.95 E-value=0.3 Score=53.41 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=47.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ------EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||||.+++...... -..++||+.....+.. .++.++.+.. .....+....+....+.+..-+
T Consensus 64 ~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 64 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 6999999999998876533 4568899887765543 3555554321 1122222333333344467789
Q ss_pred EEEeCCCC
Q 000869 76 IILDNIWK 83 (1247)
Q Consensus 76 lvlDd~~~ 83 (1247)
+|+|.+..
T Consensus 137 IVIDSv~a 144 (321)
T TIGR02012 137 IVVDSVAA 144 (321)
T ss_pred EEEcchhh
Confidence 99999853
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.87 E-value=0.44 Score=50.59 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=46.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe-EEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR-VVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESS------RASRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~-~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~ 66 (1247)
+|+|||+||+.+++..... |+. ++++-+++. ....++.+.+...=.+.. .+..... ....+-+
T Consensus 78 ~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AE 155 (274)
T cd01133 78 AGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAE 155 (274)
T ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999988743 544 555556544 446666666654321111 1111111 1122233
Q ss_pred HHh--cCCeEEEEEeCCCC
Q 000869 67 QLK--REEKILIILDNIWK 83 (1247)
Q Consensus 67 ~l~--~~~~~LlvlDd~~~ 83 (1247)
+++ .++++|+++||+-.
T Consensus 156 yfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 156 YFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHhcCCeEEEEEeChhH
Confidence 332 28999999999854
No 215
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.80 E-value=0.45 Score=58.93 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCccHHHHHHHHHHHhhhccC----CCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKL----FDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILII 77 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Llv 77 (1247)
+|+|||++|+.+++....... .+..+|.. +...+ +..........++...+.+.+....+.+|+
T Consensus 216 pGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-------laG~~~~Ge~e~rl~~l~~~l~~~~~~ILf 283 (758)
T PRK11034 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-------LAGTKYRGDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-------hcccchhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 799999999999987643221 12233321 11111 111111112334455555555545678999
Q ss_pred EeCCCCc----------ccchhhccCCCCCCCCcEEEEecCChhhhh-------hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 78 LDNIWKR----------VDLETVGIPFGDDHRGCKLLLTARDRTVLF-------SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 78 lDd~~~~----------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
+|+++.. .+...+..++...+ .-+||-+|...+... ..+....+.+++++.+++.+++....
T Consensus 284 IDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 284 IDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred eccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 9999743 11222222333232 233444444333211 11334689999999999999999776
No 216
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.78 E-value=0.84 Score=58.31 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCccHHHHHHHHHHHhhhccCC-----CeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc-CCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLF-----DRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR-EEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~L 75 (1247)
+|+|||++|..++++...+.-+ ..+++++++. +. + +.. .......++..+.+.+.. +++++
T Consensus 203 pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l~---a---~~~-~~g~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 203 PGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------LI---A---GAK-YRGEFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred CCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------Hh---h---cch-hhhhHHHHHHHHHHHHHhcCCCeE
Confidence 6999999999999987532111 2234444321 10 0 000 001223344555555542 56899
Q ss_pred EEEeCCCCcc---------cchhhccCCCCCCCCcEEEEecCChhhhh-------hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 76 IILDNIWKRV---------DLETVGIPFGDDHRGCKLLLTARDRTVLF-------SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 76 lvlDd~~~~~---------~~~~l~~~~~~~~~~~~vliTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
|++|+++... +...+..+....+. -++|-+|....... .......+.++..+.++..+++...
T Consensus 270 LfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred EEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 9999997542 11222223333332 23444443332210 1134457889999999999999877
Q ss_pred h
Q 000869 140 A 140 (1247)
Q Consensus 140 ~ 140 (1247)
.
T Consensus 349 ~ 349 (852)
T TIGR03346 349 K 349 (852)
T ss_pred H
Confidence 5
No 217
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.49 Score=55.36 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc--cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT--IDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
.|+|||+||++++++.. +...-.+.+++++.- .....+++.+-.-+ -..+. -.+.++|||
T Consensus 440 ~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~-~~PSiIvLD 501 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW-YAPSIIVLD 501 (952)
T ss_pred CCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-hCCcEEEEc
Confidence 59999999999999988 555666777877642 33444444443221 11111 578999999
Q ss_pred CCCCcc--------cch-------hhc-cCCCC-CCCCcE--EEEecCChhhhh-----hcCCcceEEcCCCCHHHHHHH
Q 000869 80 NIWKRV--------DLE-------TVG-IPFGD-DHRGCK--LLLTARDRTVLF-----SMGSEKNFLVDILKEEEAWRL 135 (1247)
Q Consensus 80 d~~~~~--------~~~-------~l~-~~~~~-~~~~~~--vliTtR~~~~~~-----~~~~~~~~~l~~l~~~ea~~l 135 (1247)
|++-.. +|+ ++. ..... ...+.+ +|-|........ .........++.+...+-.++
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEI 581 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHH
Confidence 986431 111 000 00000 112333 444444333222 111223667888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCC-CchHHHHH
Q 000869 136 FKLMAGDDVENRELKSTATEVAKACKG-LPIALTTI 170 (1247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 170 (1247)
+............+.+ ..-+..+|.| .|.-+.+.
T Consensus 582 L~~~~s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 582 LTTIFSKNLSDITMDD-LDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHhhhhhhhhHH-HHHHHHhcCCccchhHHHH
Confidence 8877733222112222 2226777765 45444443
No 218
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.67 E-value=0.084 Score=53.81 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCCCccEEEccCCCCcccc-ccchhhhcCCCCCcEEEccCCCCc
Q 000869 341 LECPQLEFLYMDSNGSSVEI-NVPEKFFTGMKKLKVVDFCRMQFF 384 (1247)
Q Consensus 341 ~~~~~L~~L~l~~n~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~ 384 (1247)
.+||+|+..+|+.|-+.... ....++++.-..|..|.+++|.+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 36777777777777654332 112345556666666666666554
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=92.62 E-value=0.2 Score=53.60 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||+||.+++...... -..|.+++. .++...+...... .....+.+... ...-++|+||+
T Consensus 111 ~GtGKThLa~al~~~a~~~--G~~v~~~~~------~~l~~~l~~a~~~--------~~~~~~~~~~~-~~~dlLiiDdl 173 (259)
T PRK09183 111 SGVGKTHLAIALGYEAVRA--GIKVRFTTA------ADLLLQLSTAQRQ--------GRYKTTLQRGV-MAPRLLIIDEI 173 (259)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeH------HHHHHHHHHHHHC--------CcHHHHHHHHh-cCCCEEEEccc
Confidence 6999999999998875532 234556542 2333333221110 01222222222 45679999999
Q ss_pred CC
Q 000869 82 WK 83 (1247)
Q Consensus 82 ~~ 83 (1247)
+-
T Consensus 174 g~ 175 (259)
T PRK09183 174 GY 175 (259)
T ss_pred cc
Confidence 75
No 220
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.57 E-value=0.5 Score=59.81 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.+|+++++..... ....+-++.+...+...+ .+-+|....-... +....+...+++....+|+||++
T Consensus 605 ~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~~----~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 605 SGVGKTETALALAELLYGG--EQNLITINMSEFQEAHTV----SRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred CCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhhh----ccccCCCCCcccc-cccchHHHHHHhCCCcEEEEech
Confidence 6999999999999886432 233444454433222111 1112222111110 01112334445567889999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 678 eka 680 (852)
T TIGR03345 678 EKA 680 (852)
T ss_pred hhc
Confidence 865
No 221
>PRK09354 recA recombinase A; Provisional
Probab=92.53 E-value=0.39 Score=52.97 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ------EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||||.+++...... -..++||+.....+.. .++.+|.+.. .....+....+...+..+..-+
T Consensus 69 ~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 69 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 6999999999998776533 4678999998777653 4555554331 1122222233333334467789
Q ss_pred EEEeCCCC
Q 000869 76 IILDNIWK 83 (1247)
Q Consensus 76 lvlDd~~~ 83 (1247)
+|+|.|..
T Consensus 142 IVIDSvaa 149 (349)
T PRK09354 142 IVVDSVAA 149 (349)
T ss_pred EEEeChhh
Confidence 99999853
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.51 E-value=0.7 Score=44.67 Aligned_cols=109 Identities=24% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC---ccCHHHHHHHHH----HHhCCCc--cccchHH-------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ---TIDIKKIQQAIA----EKLGLVL--QEETESS-------RASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~---~~~~~~~~~~i~----~~l~~~~--~~~~~~~-------~~~~~~ 65 (1247)
.|.||||+|...+-+.... =..|.++.+-. ...-..+++.+- .+.+... ...+..+ ..+...
T Consensus 11 ~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a~ 88 (159)
T cd00561 11 NGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGWAFAK 88 (159)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 5899999999999877633 23455544322 223333333331 0001100 0011111 112333
Q ss_pred HHHhcCCeEEEEEeCCCCc-----ccchhhccCCCCCCCCcEEEEecCChhh
Q 000869 66 EQLKREEKILIILDNIWKR-----VDLETVGIPFGDDHRGCKLLLTARDRTV 112 (1247)
Q Consensus 66 ~~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~vliTtR~~~~ 112 (1247)
..+..+.-=|+|||.+--. .+.+.+...+.....+.-||+|.|+..-
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 3344467789999998543 2233333344445567779999999764
No 223
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=1.9 Score=46.98 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=78.9
Q ss_pred CCccHHHHHHHHHHHhhh--------ccCCCeEEEEEc-CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCC
Q 000869 2 GGIGKTTLVKEVARKARK--------DKLFDRVVFSEV-SQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~--------~~~f~~~~w~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 72 (1247)
.|+||+++|+++++..-+ ..+.+.+++++. +...+..++. ++.+.+.... ...+.
T Consensus 27 eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------------~~~~~ 90 (299)
T PRK07132 27 YNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------------FVQSQ 90 (299)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC---------------cccCC
Confidence 488999999999888722 222334444432 2222222222 2232221111 01157
Q ss_pred eEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEec-CChhhhhh-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCChh
Q 000869 73 KILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTA-RDRTVLFS-MGSEKNFLVDILKEEEAWRLFKLMAGDDVENRE 148 (1247)
Q Consensus 73 ~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTt-R~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~ 148 (1247)
+-++|+|+++... ...++.-.+..-...+.+|++| +...+... ...+..+++.++++++..+.+.+. + .
T Consensus 91 ~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~---~--- 163 (299)
T PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N---K--- 163 (299)
T ss_pred ceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C---C---
Confidence 7888889987653 2334444444444566666544 44444432 355789999999999998887764 2 1
Q ss_pred hHHHHHHHHHHcCCCchHHHH
Q 000869 149 LKSTATEVAKACKGLPIALTT 169 (1247)
Q Consensus 149 ~~~~~~~i~~~~~g~Plai~~ 169 (1247)
..+.+..++...+|.=.|+..
T Consensus 164 ~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ChhHHHHHHHHcCCHHHHHHH
Confidence 123455666666663244444
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.43 E-value=0.1 Score=52.12 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||.++++..... =..|.|+++ .+++..+.. ..... ......+++. +-=||||||+
T Consensus 56 ~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~~~----~~~~~~~~l~--~~dlLilDDl 117 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRSDG----SYEELLKRLK--RVDLLILDDL 117 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHCCT----THCHHHHHHH--TSSCEEEETC
T ss_pred HhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----ccccc----chhhhcCccc--cccEeccccc
Confidence 6999999999999987643 245777764 334444432 11111 1223445554 4567889999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
...
T Consensus 118 G~~ 120 (178)
T PF01695_consen 118 GYE 120 (178)
T ss_dssp TSS
T ss_pred cee
Confidence 764
No 225
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.41 E-value=3.2 Score=46.67 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=71.3
Q ss_pred CeEEEEEeCCCCc-----------ccchhhccCCCCCCCCcEEEEecCChhhhh----hc--CCcceEEcCCCCHHHHHH
Q 000869 72 EKILIILDNIWKR-----------VDLETVGIPFGDDHRGCKLLLTARDRTVLF----SM--GSEKNFLVDILKEEEAWR 134 (1247)
Q Consensus 72 ~~~LlvlDd~~~~-----------~~~~~l~~~~~~~~~~~~vliTtR~~~~~~----~~--~~~~~~~l~~l~~~ea~~ 134 (1247)
.+-+||+||+... .+|.+. +- ..+-..||++|-+....+ .+ .....+.|...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3678999998543 234432 22 223456888887766544 22 234677899999999999
Q ss_pred HHHHHhCCCCCC-------------------hhhHHHHHHHHHHcCCCchHHHHHHHHHhcC
Q 000869 135 LFKLMAGDDVEN-------------------RELKSTATEVAKACKGLPIALTTIARALRNK 177 (1247)
Q Consensus 135 l~~~~~~~~~~~-------------------~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 177 (1247)
+...+....... ..........++.+||=-.-+..+++.++..
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 999998532110 2345567788999999999999999999877
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.39 E-value=0.23 Score=54.45 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||.++++..... -..|.|+.+. +++..+....+.. ...+..+.+ .+-=||||||+
T Consensus 165 ~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~--------~~~~~l~~l--~~~dlLiIDDi 226 (306)
T PRK08939 165 FGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG--------SVKEKIDAV--KEAPVLMLDDI 226 (306)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC--------cHHHHHHHh--cCCCEEEEecC
Confidence 5999999999999998743 2346666653 4555554444211 123344444 46778999999
Q ss_pred CCc--ccchh--hccCC-CCC-CCCcEEEEecCC
Q 000869 82 WKR--VDLET--VGIPF-GDD-HRGCKLLLTARD 109 (1247)
Q Consensus 82 ~~~--~~~~~--l~~~~-~~~-~~~~~vliTtR~ 109 (1247)
... ..|.. +.... ..+ ..+-.+|+||--
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 754 34432 22222 111 134457777753
No 227
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.38 E-value=0.42 Score=52.56 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHHhhhc----cCCCeEEEEEcCCccCHHHHHHHHHHHhCCC
Q 000869 2 GGIGKTTLVKEVARKARKD----KLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 51 (1247)
+|+|||++|.+++-..... ..=..++||+....++...+. ++++.++.+
T Consensus 105 ~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 105 FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 7999999999887543211 112469999999888777654 456666654
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.37 E-value=0.33 Score=58.39 Aligned_cols=162 Identities=10% Similarity=0.143 Sum_probs=77.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEc---CCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh---------
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEV---SQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK--------- 69 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~--------- 69 (1247)
+|+||||+++.++.... ++..-|++. ....+...+...++.++... ....+....+..+..
T Consensus 119 ~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~---~s~~~~F~~fl~~a~~~~~~~g~~ 191 (637)
T TIGR00602 119 SGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF---QSQIEVFSEFLLRATNKLQMLGDD 191 (637)
T ss_pred CCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccccchhhhhccccc---cchHHHHHHHHHHHHhhhcccccc
Confidence 69999999999998764 333334221 11111111222222222221 112222222222211
Q ss_pred -cCCeEEEEEeCCCCcc-----cchhhcc-CCCCCCCCcEEEEecCChh---------hh------hhc---CCcceEEc
Q 000869 70 -REEKILIILDNIWKRV-----DLETVGI-PFGDDHRGCKLLLTARDRT---------VL------FSM---GSEKNFLV 124 (1247)
Q Consensus 70 -~~~~~LlvlDd~~~~~-----~~~~l~~-~~~~~~~~~~vliTtR~~~---------~~------~~~---~~~~~~~l 124 (1247)
.+++.+|++|+++... .+..+.. .+...+.-.-|+|||.+.. .. ..+ .....+..
T Consensus 192 ~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~F 271 (637)
T TIGR00602 192 LMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISF 271 (637)
T ss_pred cCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEe
Confidence 2467899999995431 2333332 2222233334666663221 00 001 12346889
Q ss_pred CCCCHHHHHHHHHHHhCCCC--C-C---hhhHHHHHHHHHHcCCC-chHHHHH
Q 000869 125 DILKEEEAWRLFKLMAGDDV--E-N---RELKSTATEVAKACKGL-PIALTTI 170 (1247)
Q Consensus 125 ~~l~~~ea~~l~~~~~~~~~--~-~---~~~~~~~~~i~~~~~g~-Plai~~~ 170 (1247)
.+++..+-.+.+...+.... . . ....+....|+...+|- --||..+
T Consensus 272 nPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 272 NPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 99999997777777763210 0 0 11235666777767664 3344333
No 229
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.34 E-value=0.52 Score=59.14 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.+|+.+++.. +...+.++.++..+...+- +.+|....-.. .+....+.+.++.....+++||++
T Consensus 493 ~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~----~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 493 TGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVS----RLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred CCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHH----HHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEech
Confidence 6999999999999876 2445677765543322221 12222111000 111223344444466789999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 563 eka 565 (731)
T TIGR02639 563 EKA 565 (731)
T ss_pred hhc
Confidence 875
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.34 E-value=0.63 Score=52.47 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCccHHHHHHHHHHHhhhcc-------------------CCCeEEEEEcCCccC---HHHHHHHHHHHhCCCccccchHH
Q 000869 2 GGIGKTTLVKEVARKARKDK-------------------LFDRVVFSEVSQTID---IKKIQQAIAEKLGLVLQEETESS 59 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------------~f~~~~w~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~ 59 (1247)
+|+||||+|.++++..-... ..+.+..+..+.... ..+.++++++.......
T Consensus 33 ~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~------ 106 (325)
T COG0470 33 PGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL------ 106 (325)
T ss_pred CCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC------
Confidence 59999999999999886432 124566666655544 34445555544432221
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCChh-hhh-hcCCcceEEcCCCCHHHH
Q 000869 60 RASRLHEQLKREEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRT-VLF-SMGSEKNFLVDILKEEEA 132 (1247)
Q Consensus 60 ~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~-~~~-~~~~~~~~~l~~l~~~ea 132 (1247)
.++.-++|+|+++.. +...++..........+++|++|.... +.. .......+++.+.+..+.
T Consensus 107 ----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 107 ----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred ----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 267889999999876 223444434444456777777776332 222 123455677766444333
No 231
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.29 E-value=0.38 Score=52.59 Aligned_cols=74 Identities=26% Similarity=0.290 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ------EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||||.+++...... -..++||+.....+.. .+..++.+.. .....+....+......+..-+
T Consensus 64 ~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 64 ESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 6999999999998776533 4678999987766643 3444544321 1112222233333334467789
Q ss_pred EEEeCCC
Q 000869 76 IILDNIW 82 (1247)
Q Consensus 76 lvlDd~~ 82 (1247)
+|+|.+.
T Consensus 137 IVIDSva 143 (325)
T cd00983 137 IVVDSVA 143 (325)
T ss_pred EEEcchH
Confidence 9999975
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.27 E-value=0.43 Score=50.22 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=41.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... -..|+++++ .++...+...... . ......+.+.+. ..=+||+||+
T Consensus 108 ~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~----~~~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--S----ETSEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--c----cccHHHHHHHhc--cCCEEEEeCC
Confidence 6999999999999988743 356777754 4444444433321 0 111223445453 4558888999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
...
T Consensus 172 g~~ 174 (244)
T PRK07952 172 GVQ 174 (244)
T ss_pred CCC
Confidence 765
No 233
>PRK04296 thymidine kinase; Provisional
Probab=92.24 E-value=0.14 Score=51.94 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccc--c-chHHHHHHHHHHHhcCCeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQE--E-TESSRASRLHEQLKREEKILIIL 78 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~~~~~~~l~~~~~~Llvl 78 (1247)
.|.||||+|..++.+.... -..|+.+. ...+.+.....++.+++...+. . ...+....+.+ ..++.-+||+
T Consensus 11 ~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~dvviI 84 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKIDCVLI 84 (190)
T ss_pred CCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCCEEEE
Confidence 4999999999999988643 34555553 1112222234456666643332 1 11222222222 2245568999
Q ss_pred eCCCCc--ccchhhccCCCCCCCCcEEEEecCChh
Q 000869 79 DNIWKR--VDLETVGIPFGDDHRGCKLLLTARDRT 111 (1247)
Q Consensus 79 Dd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~~ 111 (1247)
|.++-. +++..+...+ ...|..|++|.++..
T Consensus 85 DEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred EccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 999653 2233332221 235778999988854
No 234
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.13 E-value=0.091 Score=29.06 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=6.0
Q ss_pred CCcEEEccCCCCCcCc
Q 000869 417 NLEILSFSGSGIVKLP 432 (1247)
Q Consensus 417 ~L~~L~L~~~~i~~lp 432 (1247)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 235
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.04 E-value=0.86 Score=57.43 Aligned_cols=141 Identities=17% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|+++++..... | +.+..+ + +.... .......+..+++......+++|+||++
T Consensus 496 pGtGKT~lakalA~e~~~~--f---i~v~~~------~----l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGAN--F---IAVRGP------E----ILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred CCCCHHHHHHHHHHhcCCC--E---EEEehH------H----Hhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 7999999999999886422 2 222211 1 11111 1112334566666666578899999999
Q ss_pred CCcc--------------cchhhccCCCC--CCCCcEEEEecCChhhhh--hc---CCcceEEcCCCCHHHHHHHHHHHh
Q 000869 82 WKRV--------------DLETVGIPFGD--DHRGCKLLLTARDRTVLF--SM---GSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 82 ~~~~--------------~~~~l~~~~~~--~~~~~~vliTtR~~~~~~--~~---~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
+... ....+...+.. ...+..||.||..+.... .. +....+.++..+.++-.++|..+.
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 7431 01112111111 123445666776655433 11 234678899999999999998777
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCc
Q 000869 141 GDDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 141 ~~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
.......+ .....+++.+.|.-
T Consensus 636 ~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 636 RSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred cCCCCCcc--CCHHHHHHHcCCCC
Confidence 42221111 12456777777654
No 236
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.97 E-value=1.4 Score=48.30 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=74.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh-----cCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK-----REEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-----~~~~~Ll 76 (1247)
+|.|||.+|++++.+.... | +-++.++-.+. . ..+....+.++++... ++++++|
T Consensus 157 PGcGKTllAraiA~elg~~--~---i~vsa~eL~sk------~---------vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 157 KGQGKSFQCELVFKKMGIE--P---IVMSAGELESE------N---------AGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcC------c---------CCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 7999999999999987532 2 33333221110 0 0111222233332221 3689999
Q ss_pred EEeCCCCcc------c--c------hhhccC--------------CCCCCCCcEEEEecCChhhhh----hcCC-cceEE
Q 000869 77 ILDNIWKRV------D--L------ETVGIP--------------FGDDHRGCKLLLTARDRTVLF----SMGS-EKNFL 123 (1247)
Q Consensus 77 vlDd~~~~~------~--~------~~l~~~--------------~~~~~~~~~vliTtR~~~~~~----~~~~-~~~~~ 123 (1247)
++|++|... + . ..+... ......+-.||+||.+..... +.+. ...
T Consensus 217 FIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-- 294 (413)
T PLN00020 217 FINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 294 (413)
T ss_pred EEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce--
Confidence 999997531 0 0 111110 012234677888997666433 1111 122
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCch
Q 000869 124 VDILKEEEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPI 165 (1247)
Q Consensus 124 l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 165 (1247)
+...+.++-.++++.+....... .....++++...|-|+
T Consensus 295 i~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 295 YWAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred eCCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 34567788888888877543322 2456667777777664
No 237
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.92 E-value=1.9 Score=46.64 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCCh-hhhh-hcCCcceEEcCCCCHHHHHHHHH
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARDR-TVLF-SMGSEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~~-~~~~-~~~~~~~~~l~~l~~~ea~~l~~ 137 (1247)
+++-++|+|+++.. +...++.-.+-.-..++.+|.+|.+. .+.. .......+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 57789999999876 23344433333333445555555444 4443 224466777766 5565555554
No 238
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.89 E-value=0.63 Score=51.64 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCccHHHHHHHHHHHhhh----ccCCCeEEEEEcCCccCHHHHHHHHHHHhCCC
Q 000869 2 GGIGKTTLVKEVARKARK----DKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 51 (1247)
+|+|||+|+..++-.... ...-..++||+....+....+.+ +++.++.+
T Consensus 135 ~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 135 FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 699999999998754332 11124799999998888776544 56666654
No 239
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.69 E-value=1.3 Score=56.52 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=41.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||++|+.++...... -..++.++.+.......+ .+-+|.+..-.. .+....+...+......+|+||++
T Consensus 604 ~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 604 TGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV----ARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred CCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH----HHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEecc
Confidence 6999999999999876432 245666666654332221 111222211000 001122333343355678999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 677 eka 679 (852)
T TIGR03346 677 EKA 679 (852)
T ss_pred ccC
Confidence 875
No 240
>PRK12377 putative replication protein; Provisional
Probab=91.67 E-value=0.53 Score=49.66 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||.||.++++..... ...|+++++. ++...+....... .....+.+.+ ...-|||+||+
T Consensus 110 ~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l--~~~dLLiIDDl 172 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQEL--CKVDLLVLDEI 172 (248)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHh--cCCCEEEEcCC
Confidence 6999999999999998743 4457777654 3444444333211 1112344444 47789999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
...
T Consensus 173 g~~ 175 (248)
T PRK12377 173 GIQ 175 (248)
T ss_pred CCC
Confidence 543
No 241
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.53 E-value=1.1 Score=45.87 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=83.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-+|+++++...+- .+-|. .-+-|.+.+| +-..++.++.++.++..+|++.+|.+
T Consensus 160 pGTGKTm~Akalane~kvp-----~l~vk---------at~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 160 PGTGKTMMAKALANEAKVP-----LLLVK---------ATELIGEHVG------DGARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred CCccHHHHHHHHhcccCCc-----eEEec---------hHHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 7999999999999876532 12221 1122333333 24566777888887789999999998
Q ss_pred CCc--------------ccchhhccCCCC--CCCCcEEEEecCChhhhhh-c--CCcceEEcCCCCHHHHHHHHHHHhCC
Q 000869 82 WKR--------------VDLETVGIPFGD--DHRGCKLLLTARDRTVLFS-M--GSEKNFLVDILKEEEAWRLFKLMAGD 142 (1247)
Q Consensus 82 ~~~--------------~~~~~l~~~~~~--~~~~~~vliTtR~~~~~~~-~--~~~~~~~l~~l~~~ea~~l~~~~~~~ 142 (1247)
|.. +.+.++...+.. .+.|-..|-.|.++.++.. + ....-++..--.++|-..++...+..
T Consensus 220 DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 220 DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred hhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 754 112333222211 2346666777776666541 1 22345555566788899999888842
Q ss_pred CCCChhhHHHHHHHHHHcCCCc
Q 000869 143 DVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 143 ~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
..-..+ ...+.++++.+|.-
T Consensus 300 ~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 300 FPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred CCCccc--cCHHHHHHHhCCCC
Confidence 221111 12556677776653
No 242
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.45 E-value=0.44 Score=53.75 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=46.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHhcCCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE--TESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
+|+||||++.+++...... -..++|++..+. ... ++.-+.+++...... ......+.+.+.+...+.-++|+|
T Consensus 91 pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVID 165 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQ-IKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIID 165 (372)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHH-HHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEc
Confidence 6999999999999887643 357889987543 222 233345666433211 111223445555544577788999
Q ss_pred CCCC
Q 000869 80 NIWK 83 (1247)
Q Consensus 80 d~~~ 83 (1247)
.+..
T Consensus 166 SIq~ 169 (372)
T cd01121 166 SIQT 169 (372)
T ss_pred chHH
Confidence 9753
No 243
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=91.43 E-value=0.1 Score=52.75 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=49.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcC----Cc-----cCHHH----HHHHHHHHhCCCccccchHHHHHHHHHH-
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVS----QT-----IDIKK----IQQAIAEKLGLVLQEETESSRASRLHEQ- 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~----~~-----~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 67 (1247)
+|.|||.||.+++-+.-..+.|+.++++.-. +. .+..+ ....+...+..-. ..+..+.+.+.
T Consensus 28 AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~----~~~~~~~~~~~~ 103 (205)
T PF02562_consen 28 AGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF----GKEKLEELIQNG 103 (205)
T ss_dssp TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-----TTCHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh----ChHhHHHHhhcC
Confidence 7999999999999877666889999887421 11 11111 1111122221111 11111222211
Q ss_pred --------HhcC---CeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecC
Q 000869 68 --------LKRE---EKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTAR 108 (1247)
Q Consensus 68 --------l~~~---~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR 108 (1247)
..+| ....+|+|.+++. +++..+... .+.+||++++=-
T Consensus 104 ~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD 154 (205)
T PF02562_consen 104 KIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGD 154 (205)
T ss_dssp SEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-
T ss_pred eEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecC
Confidence 0012 4688999999876 455555443 467999999853
No 244
>PRK08118 topology modulation protein; Reviewed
Probab=91.41 E-value=0.11 Score=51.32 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=22.0
Q ss_pred CCCccHHHHHHHHHHHhhhc-cCCCeEEE
Q 000869 1 MGGIGKTTLVKEVARKARKD-KLFDRVVF 28 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~-~~f~~~~w 28 (1247)
.+|+||||+|+++++..... -.||.++|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999987643 34677776
No 245
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.37 E-value=1.5 Score=55.78 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCccHHHHHHHHHHHhhhccC-----CCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh-cCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKL-----FDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK-REEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~L 75 (1247)
+|+|||++|+.++.+...+.- -..+++++++.... +.. ....-.+++..+.+.+. .+.+++
T Consensus 208 pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------------g~~-~~g~~e~~lk~~~~~~~~~~~~~I 274 (857)
T PRK10865 208 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------------GAK-YRGEFEERLKGVLNDLAKQEGNVI 274 (857)
T ss_pred CCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh------------ccc-hhhhhHHHHHHHHHHHHHcCCCeE
Confidence 799999999999998753211 12344454433110 000 01112334444554443 257899
Q ss_pred EEEeCCCCcc---------cchhhccCCCCCCCCcEEEEecCChhhh----h---hcCCcceEEcCCCCHHHHHHHHHHH
Q 000869 76 IILDNIWKRV---------DLETVGIPFGDDHRGCKLLLTARDRTVL----F---SMGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 76 lvlDd~~~~~---------~~~~l~~~~~~~~~~~~vliTtR~~~~~----~---~~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
|++|+++... +...+.-+....+ .-++|-+|-..+.. . .......+.++..+.+++..+++..
T Consensus 275 LfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 275 LFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred EEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 9999997542 1222322333333 23344444333321 1 1123346778888999999988766
Q ss_pred h
Q 000869 140 A 140 (1247)
Q Consensus 140 ~ 140 (1247)
.
T Consensus 354 ~ 354 (857)
T PRK10865 354 K 354 (857)
T ss_pred h
Confidence 5
No 246
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.33 E-value=0.9 Score=47.96 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCccHHHHHHHHHHHhhhccCC------CeEEEEEcCCccCHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLF------DRVVFSEVSQTIDIKKI 40 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f------~~~~w~~~~~~~~~~~~ 40 (1247)
+|.|||++|.+++...... - ..++|++.....+...+
T Consensus 28 ~GsGKT~l~~~ia~~~~~~--~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLP--GELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CCCChhHHHHHHHHHhhcc--cccCCCcceEEEEecCCCCCHHHH
Confidence 6999999999998765422 3 57899998776665443
No 247
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.33 E-value=7.5 Score=40.38 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.5
Q ss_pred CCccHHHHHHHHHHHhhhc
Q 000869 2 GGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (1247)
.|.|||++++++.+....+
T Consensus 61 rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 6999999999999887744
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.31 E-value=0.83 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKK 39 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~ 39 (1247)
+|+|||++|.+++...... -..++|++.. ..+...
T Consensus 32 ~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 32 PGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 7999999999999877533 5789999987 455443
No 249
>PRK07261 topology modulation protein; Provisional
Probab=91.30 E-value=0.68 Score=46.10 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=19.1
Q ss_pred CCCccHHHHHHHHHHHhhhc-cCCCeEEE
Q 000869 1 MGGIGKTTLVKEVARKARKD-KLFDRVVF 28 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~-~~f~~~~w 28 (1247)
++|+||||+|++++...... -..|.+.|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999998775321 12344555
No 250
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.17 E-value=0.16 Score=28.10 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.9
Q ss_pred CCcCeEEEcccCCccccC
Q 000869 1165 PSLEYLFVVGCPKMNIFT 1182 (1247)
Q Consensus 1165 ~sL~~L~i~~C~~l~~lp 1182 (1247)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666666 55554
No 251
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=1.3 Score=51.12 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=85.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||.||++++.+..+- ++.++.+ .|...+. ....+.+.++++......+|++++|++
T Consensus 232 PGCGKT~lA~AiAgel~vP-------f~~isAp--------eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 232 PGCGKTSLANAIAGELGVP-------FLSISAP--------EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred CCccHHHHHHHHhhhcCCc-------eEeecch--------hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecc
Confidence 7999999999999886543 3333221 1121221 224567788888888789999999999
Q ss_pred CCcc--------c------------chhhccCCCCCCCCcEEEE-ecCChhhhh---hcCC-cceEEcCCCCHHHHHHHH
Q 000869 82 WKRV--------D------------LETVGIPFGDDHRGCKLLL-TARDRTVLF---SMGS-EKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 82 ~~~~--------~------------~~~l~~~~~~~~~~~~vli-TtR~~~~~~---~~~~-~~~~~l~~l~~~ea~~l~ 136 (1247)
|... + ++.+... ...+.+.-||= |+|...+-. +.+. ..-+.+.--++++-.+++
T Consensus 292 DAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 292 DAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHH
Confidence 8651 1 1122111 11123333333 445444322 2222 356778888888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCCCc----hHHHHHHHHHh
Q 000869 137 KLMAGDDVENRELKSTATEVAKACKGLP----IALTTIARALR 175 (1247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~a~~l~ 175 (1247)
+..+..-..... -...+|++..-|.- .|+...|+..+
T Consensus 371 ~~~~~~lrl~g~--~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 371 RIICRGLRLSGD--FDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred HHHHhhCCCCCC--cCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 888721111111 13567777776653 45555555544
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.06 E-value=0.8 Score=51.30 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.|+||||++.+++.....+.....|..++.... ....+-++.+++.++.+...............++. +.-++++|.
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~--~~DlVLIDT 223 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR--NKHMVLIDT 223 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--CCCEEEEcC
Confidence 699999999999988653322346777775543 34556667777888876654443333444445553 346666898
Q ss_pred CCCc
Q 000869 81 IWKR 84 (1247)
Q Consensus 81 ~~~~ 84 (1247)
..-.
T Consensus 224 aG~~ 227 (374)
T PRK14722 224 IGMS 227 (374)
T ss_pred CCCC
Confidence 8543
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=1.1 Score=49.72 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCcc--cchhhccCCCCCCCCcEEEEecCChh-hhhh-cCCcceEEcCCCCHHHHHHHHHHH
Q 000869 71 EEKILIILDNIWKRV--DLETVGIPFGDDHRGCKLLLTARDRT-VLFS-MGSEKNFLVDILKEEEAWRLFKLM 139 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~vliTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~l~~~~ 139 (1247)
+++-++|+|+++... ....+...+.....+..+|++|.+.. +... ......+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 445555668887652 22222222222223455666666554 3322 244678889999999999888654
No 254
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.91 E-value=0.9 Score=46.22 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=49.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCcccc----chHHHHHHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVLQEE----TESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
.|+||||.+.+++.....+ -..|..++... .....+-++..++.++.+.... +..+...+..++...++.=++
T Consensus 10 tGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~v 87 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLV 87 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEE
Confidence 6999999999999988754 45677787764 3446677788899998764322 233334333444432344466
Q ss_pred EEeCCC
Q 000869 77 ILDNIW 82 (1247)
Q Consensus 77 vlDd~~ 82 (1247)
++|=..
T Consensus 88 lIDT~G 93 (196)
T PF00448_consen 88 LIDTAG 93 (196)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 667653
No 255
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.65 E-value=1.9 Score=54.96 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||++|+.+++..... -...+.++.+....... ..+-+|.+..-... +....+....+.....+|+||++
T Consensus 607 ~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~~----~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 607 TGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKHS----VSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhhh----HHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeeh
Confidence 6999999999999766422 23456666654322111 11122322111111 11112333333345579999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 680 eka 682 (857)
T PRK10865 680 EKA 682 (857)
T ss_pred hhC
Confidence 854
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.62 E-value=0.25 Score=54.57 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||.||.++++....+ -..|+|+++.. +...+...-. . . ........+.+. .-=|||+||+
T Consensus 192 ~GtGKThLa~aIa~~l~~~--g~~V~y~t~~~------l~~~l~~~~~-~---~--~~~~~~~~~~l~--~~DLLIIDDl 255 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDR--GKSVIYRTADE------LIEILREIRF-N---N--DKELEEVYDLLI--NCDLLIIDDL 255 (329)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEEHHH------HHHHHHHHHh-c---c--chhHHHHHHHhc--cCCEEEEecc
Confidence 6999999999999988744 34678887544 3333322100 0 0 011111134442 3458999999
Q ss_pred CCc--ccc--hhhccCCCCC-CCCcEEEEecCCh
Q 000869 82 WKR--VDL--ETVGIPFGDD-HRGCKLLLTARDR 110 (1247)
Q Consensus 82 ~~~--~~~--~~l~~~~~~~-~~~~~vliTtR~~ 110 (1247)
... ..| +.+...+-.. ..+..+||||...
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 654 122 1221111111 1244588888654
No 257
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.56 E-value=1.3 Score=54.56 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=75.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|+.++.+.... .+.++.+.. ... ..+. ....+..+........+++|++|++
T Consensus 194 ~G~GKt~~~~~~a~~~~~~-----f~~is~~~~------~~~---~~g~------~~~~~~~~f~~a~~~~P~IifIDEi 253 (644)
T PRK10733 194 PGTGKTLLAKAIAGEAKVP-----FFTISGSDF------VEM---FVGV------GASRVRDMFEQAKKAAPCIIFIDEI 253 (644)
T ss_pred CCCCHHHHHHHHHHHcCCC-----EEEEehHHh------HHh---hhcc------cHHHHHHHHHHHHhcCCcEEEehhH
Confidence 7999999999998876432 233333221 110 0111 1123333444444467899999999
Q ss_pred CCccc----------------chhhccCCCC--CCCCcEEEEecCChhhhh-hc----CCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRVD----------------LETVGIPFGD--DHRGCKLLLTARDRTVLF-SM----GSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~~----------------~~~l~~~~~~--~~~~~~vliTtR~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
|.... +..+...+.. ...+.-||.||..+.... .+ .....+.++..+.++-.+++..
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 76410 1111111111 123445666887665433 11 2246788899999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCCC
Q 000869 139 MAGDDVENRELKSTATEVAKACKGL 163 (1247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~~g~ 163 (1247)
+........+ .....+++.+.|.
T Consensus 334 ~~~~~~l~~~--~d~~~la~~t~G~ 356 (644)
T PRK10733 334 HMRRVPLAPD--IDAAIIARGTPGF 356 (644)
T ss_pred HhhcCCCCCc--CCHHHHHhhCCCC
Confidence 8853222111 1134466666653
No 258
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=90.52 E-value=1.1 Score=47.53 Aligned_cols=81 Identities=25% Similarity=0.252 Sum_probs=45.9
Q ss_pred CCCccHHHHHHHHHHHhhhcc----------CCCeEEEEEcCCccC-HHHHHHHHHHHhCCCcc----------------
Q 000869 1 MGGIGKTTLVKEVARKARKDK----------LFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQ---------------- 53 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~----------~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~---------------- 53 (1247)
.||+|||+||..++....... .-..|++++.....+ +..-+..+...++....
T Consensus 9 ~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~~~~l~~ 88 (239)
T cd01125 9 PGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGRIQPISI 88 (239)
T ss_pred CCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccCCCceec
Confidence 389999999999997654221 123477888766543 44444445544421110
Q ss_pred -c---cchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 54 -E---ETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 54 -~---~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
. ......++.+.+.+...+.-++|+|-+
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl 120 (239)
T cd01125 89 AREGRIIVVPEFERIIEQLLIRRIDLVVIDPL 120 (239)
T ss_pred ccCCcccccHHHHHHHHHHHhcCCCEEEECCh
Confidence 0 011233444555444357789999975
No 259
>PHA00729 NTP-binding motif containing protein
Probab=90.45 E-value=0.76 Score=47.20 Aligned_cols=17 Identities=47% Similarity=0.505 Sum_probs=15.2
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
+|+|||+||.+++++.-
T Consensus 26 pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 26 QGSGKTTYALKVARDVF 42 (226)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998753
No 260
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=1.6 Score=52.73 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.+|.|||-||+++|-+..+ =|++++... +.+.+.. ....++..++...+...++.+.+|.
T Consensus 352 PPGTGKTLLAKAiAGEAgV-------PF~svSGSE--------FvE~~~g-----~~asrvr~lf~~ar~~aP~iifide 411 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEAGV-------PFFSVSGSE--------FVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDE 411 (774)
T ss_pred CCCCcHHHHHHHHhcccCC-------ceeeechHH--------HHHHhcc-----cchHHHHHHHHHhhccCCeEEEecc
Confidence 3799999999999976543 244444321 2222211 1245667777777778899999999
Q ss_pred CCCccc-----------------chhhccCCCCCC--CCcEEEEecCChhhhh----hcC-CcceEEcCCCCHHHHHHHH
Q 000869 81 IWKRVD-----------------LETVGIPFGDDH--RGCKLLLTARDRTVLF----SMG-SEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 81 ~~~~~~-----------------~~~l~~~~~~~~--~~~~vliTtR~~~~~~----~~~-~~~~~~l~~l~~~ea~~l~ 136 (1247)
++...- +.++....-... .+--||-+|..+.+.. +.+ -...+.++.-+.....++|
T Consensus 412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred cccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 875411 112211111122 2333445777776654 222 2568888988999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCCCchHH
Q 000869 137 KLMAGDDVENRELKSTATEVAKACKGLPIAL 167 (1247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 167 (1247)
..++.......+..+.+. |+...-|.+-|.
T Consensus 492 ~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 492 KVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred HHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 999965444445556666 999999988554
No 261
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.16 E-value=1.1 Score=45.84 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHHhhhccCC--------CeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLF--------DRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f--------~~~~w~~~~~~ 34 (1247)
+|+|||+++..++.....+..| ..|+|++....
T Consensus 41 ~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 41 PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp STSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7999999999999887653222 36899988766
No 262
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.02 E-value=0.73 Score=46.33 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=22.7
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSE 30 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~ 30 (1247)
+.|+||||+|++++...... +.++++++
T Consensus 15 ~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 47999999999999988743 66777775
No 263
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=89.91 E-value=1.4 Score=48.03 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ------EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
.|+||||||.+++...... -..++||+.....+.. .+..+|.+.. .....+....+.+-++.+.--+
T Consensus 62 ~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~l 134 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDL 134 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESE
T ss_pred CCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccE
Confidence 5789999999999876533 4568999998776654 3344444332 1222233333334344566678
Q ss_pred EEEeCCCC
Q 000869 76 IILDNIWK 83 (1247)
Q Consensus 76 lvlDd~~~ 83 (1247)
+|+|.|..
T Consensus 135 VVvDSv~a 142 (322)
T PF00154_consen 135 VVVDSVAA 142 (322)
T ss_dssp EEEE-CTT
T ss_pred EEEecCcc
Confidence 99999864
No 264
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=1.4 Score=52.90 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=78.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.+|.|||.+|++++...... |-.+. .. +.. .. -.......+..++...++..++.|.+|.
T Consensus 284 pPGtGKT~lAkava~~~~~~--fi~v~-----~~-~l~---sk---------~vGesek~ir~~F~~A~~~~p~iiFiDE 343 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSR--FISVK-----GS-ELL---SK---------WVGESEKNIRELFEKARKLAPSIIFIDE 343 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCe--EEEee-----CH-HHh---cc---------ccchHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 47999999999999865422 32222 21 100 00 0112334455666666667899999999
Q ss_pred CCCccc-------------chhhccCCC--CCCCCcEEEEecCChhhhhh--c---CCcceEEcCCCCHHHHHHHHHHHh
Q 000869 81 IWKRVD-------------LETVGIPFG--DDHRGCKLLLTARDRTVLFS--M---GSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 81 ~~~~~~-------------~~~l~~~~~--~~~~~~~vliTtR~~~~~~~--~---~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
++.... ...+...+. ....+..||-||-.+..... . .-...+.++.-+.++..+.|..+.
T Consensus 344 iDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 344 IDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred hhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 976421 112222221 12234445556644443331 1 224588899999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHcCC
Q 000869 141 GDDVENRELKSTATEVAKACKG 162 (1247)
Q Consensus 141 ~~~~~~~~~~~~~~~i~~~~~g 162 (1247)
.+.............+++...|
T Consensus 424 ~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 424 RDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred cccCCcchhhhhHHHHHHHhcC
Confidence 6433321112234444544444
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.75 E-value=1 Score=47.15 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID 36 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~ 36 (1247)
+|+||||+|.+++...... -..++|++......
T Consensus 28 ~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 28 PGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 7999999999999877532 45788998765543
No 266
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=89.67 E-value=1 Score=50.01 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=33.9
Q ss_pred CCccHHHHHHHHHHHhhhc----cCCCeEEEEEcCCccCHHHHHHHHHHHhCCC
Q 000869 2 GGIGKTTLVKEVARKARKD----KLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 51 (1247)
+|+|||++|..++-..... ..-..++||+....++...+ .++++.++..
T Consensus 132 ~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 132 FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 7999999999888543211 01136999999998877655 4566666654
No 267
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.47 E-value=1.4 Score=44.20 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccc----cchHHHHHHHHHHHhcCCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQE----ETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~~~L 75 (1247)
.+|+||||+++.++...... =..++.++..... ...+.+...+...+.+... .+..+...+.......+..-+
T Consensus 8 ~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDV 85 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 47999999999999887643 2356667665432 2334444445555543221 122222222233233234445
Q ss_pred EEEeCCCC
Q 000869 76 IILDNIWK 83 (1247)
Q Consensus 76 lvlDd~~~ 83 (1247)
+|+|-...
T Consensus 86 viiDt~g~ 93 (173)
T cd03115 86 VIVDTAGR 93 (173)
T ss_pred EEEECccc
Confidence 66887654
No 268
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=89.43 E-value=1.2 Score=49.30 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCccHHHHHHHHHHHhhh----ccCCCeEEEEEcCCccCHHHHHHHHHHHhCCC
Q 000869 2 GGIGKTTLVKEVARKARK----DKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 51 (1247)
+|+|||++|..++..... ...-..++||+....++... +.++++.++..
T Consensus 105 ~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 105 FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 699999999998863321 11123689999888777664 44455665543
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.33 E-value=1.8 Score=42.67 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID 36 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~ 36 (1247)
+|+|||++|..++..... .-..++|++......
T Consensus 8 ~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 8 TGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 699999999999988764 245688888765543
No 270
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.27 E-value=0.58 Score=59.54 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=41.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|+|||++|+.+++..-.. -...+-++.+...+...+.+ -+|.+..-.. .+....+...++.....+++||++
T Consensus 548 ~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~----l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 548 TGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK----LIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred CCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH----hcCCCCcccC-cCccchHHHHHHhCCCeEEEECCh
Confidence 6999999999999876432 23455566554333222221 1222110000 011123344454456689999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 621 eka 623 (821)
T CHL00095 621 EKA 623 (821)
T ss_pred hhC
Confidence 875
No 271
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.19 E-value=1.7 Score=48.40 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCccHHHHHHHHHHHhhhcc----CCCeEEEEEcCCccCHHHHHHHHHHHhCC
Q 000869 2 GGIGKTTLVKEVARKARKDK----LFDRVVFSEVSQTIDIKKIQQAIAEKLGL 50 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 50 (1247)
+|+|||++|.+++....... .=..++||+....++...+. ++++.++.
T Consensus 104 ~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 104 FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 79999999999987754210 01379999998887776544 44555554
No 272
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.06 E-value=1.5 Score=47.80 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=46.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||++..++.....+..-..|..++..... .....+...++.++.+.........+......+. ..=++++|.
T Consensus 203 tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~--~~d~vliDt 280 (282)
T TIGR03499 203 TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR--DKDLILIDT 280 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--CCCEEEEeC
Confidence 6999999999999887643112467777776533 2233444556666665543333334444444443 345777775
Q ss_pred C
Q 000869 81 I 81 (1247)
Q Consensus 81 ~ 81 (1247)
.
T Consensus 281 ~ 281 (282)
T TIGR03499 281 A 281 (282)
T ss_pred C
Confidence 4
No 273
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=3 Score=49.71 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-+|++||.+..-. |+++..+. +++... ....+.+++++++.+...+|+|.||.+
T Consensus 714 PGTGKTLlAKAVATEcsL~-------FlSVKGPE----LLNMYV---------GqSE~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLN-------FLSVKGPE----LLNMYV---------GQSEENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred CCCchHHHHHHHHhhceee-------EEeecCHH----HHHHHh---------cchHHHHHHHHHHhhccCCeEEEeccc
Confidence 7999999999999886643 56665543 211111 224567888999998889999999999
Q ss_pred CCcc-----------cchh----hc---cCCCC-CCCCcEEEEecCChhhhh----hcCC-cceEEcCCCCHHHHHH-HH
Q 000869 82 WKRV-----------DLET----VG---IPFGD-DHRGCKLLLTARDRTVLF----SMGS-EKNFLVDILKEEEAWR-LF 136 (1247)
Q Consensus 82 ~~~~-----------~~~~----l~---~~~~~-~~~~~~vliTtR~~~~~~----~~~~-~~~~~l~~l~~~ea~~-l~ 136 (1247)
|... .++. +. .-+.. ...+--||=.|-.+++.. +.+. ..-+-|++=++++... ++
T Consensus 774 DSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 774 DSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVL 853 (953)
T ss_pred cccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHH
Confidence 7641 1111 11 11121 223444666666665543 2232 3455566655555543 34
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCC
Q 000869 137 KLMAGDDVENRELKSTATEVAKACKG 162 (1247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~~g 162 (1247)
+.......-.++ ....+|+++|.-
T Consensus 854 ~AlTrkFkLded--VdL~eiAk~cp~ 877 (953)
T KOG0736|consen 854 EALTRKFKLDED--VDLVEIAKKCPP 877 (953)
T ss_pred HHHHHHccCCCC--cCHHHHHhhCCc
Confidence 433322111111 124567777754
No 274
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.98 E-value=0.017 Score=57.24 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=38.6
Q ss_pred CCCCcEEEccCCCCccCCcccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccC
Q 000869 370 MKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSN 448 (1247)
Q Consensus 370 l~~Lr~L~Ls~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 448 (1247)
.+..++||++.|....+-.-|+.++.|..|+++.+.+... ..++.+..++++++..|+....|.+++.+++++++++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 3344444444444443333344444444444444444332 344444445555555555555555555555555555555
Q ss_pred C
Q 000869 449 C 449 (1247)
Q Consensus 449 ~ 449 (1247)
+
T Consensus 121 ~ 121 (326)
T KOG0473|consen 121 T 121 (326)
T ss_pred C
Confidence 4
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.96 E-value=1.8 Score=45.86 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQA 43 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 43 (1247)
+|+|||++|.+++...-.. -+.++|++... +..++.+.
T Consensus 30 pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 7999999999988765422 46799998765 34444444
No 276
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.86 E-value=2.9 Score=43.70 Aligned_cols=63 Identities=17% Similarity=0.032 Sum_probs=44.1
Q ss_pred EEEecCChhhhhhc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchH
Q 000869 103 LLLTARDRTVLFSM--GSEKNFLVDILKEEEAWRLFKLMAGDDVENRELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 103 vliTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 166 (1247)
|=-|||.=.+...+ +...+.+++..+.+|-.+.+.+.+..-. ..-.++.+.+|+++..|-|-.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHH
Confidence 33478765544322 3356788999999999999999884211 122357899999999999943
No 277
>PTZ00035 Rad51 protein; Provisional
Probab=88.58 E-value=2 Score=47.94 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCccHHHHHHHHHHHhhh----ccCCCeEEEEEcCCccCHHHHHHHHHHHhCCC
Q 000869 2 GGIGKTTLVKEVARKARK----DKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 51 (1247)
+|+||||++..++-.... ...=..++||+....+.... +.++++.++..
T Consensus 127 ~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 127 FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred CCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 699999999998765431 11124578999887766655 44456665543
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.39 E-value=0.5 Score=44.63 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCe-EEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDR-VVF 28 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~-~~w 28 (1247)
|+|+||||+++++++..+.+. |.. .+|
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g-~kvgGf~ 40 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKG-YKVGGFI 40 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcC-ceeeeEE
Confidence 689999999999999998654 543 444
No 279
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=88.13 E-value=1.7 Score=44.83 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
+|+|||+|+.++++... -+.++++-+++. ....++.+.+...-..+. ..+....+. ..+-++
T Consensus 24 ~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp TTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 69999999999999875 356688877754 556677776643311111 111111111 111222
Q ss_pred Hh-cCCeEEEEEeCCC
Q 000869 68 LK-REEKILIILDNIW 82 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~ 82 (1247)
++ .++++|+|+||+-
T Consensus 100 frd~G~dVlli~Dslt 115 (215)
T PF00006_consen 100 FRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHTTSEEEEEEETHH
T ss_pred HhhcCCceeehhhhhH
Confidence 22 4899999999984
No 280
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.09 E-value=1.6 Score=50.70 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=47.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||++.+++.....+.....|..++..... ...+.++...+.++................+++. ..-+||+|.
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~--~~DLVLIDT 436 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYKLVLIDT 436 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--cCCEEEecC
Confidence 6999999999999876543223457777654332 2333444445556655444333444445555553 456788888
Q ss_pred CCC
Q 000869 81 IWK 83 (1247)
Q Consensus 81 ~~~ 83 (1247)
..-
T Consensus 437 aG~ 439 (559)
T PRK12727 437 AGM 439 (559)
T ss_pred CCc
Confidence 753
No 281
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.07 E-value=2.2 Score=47.49 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHHhhhccC----CCeEEEEEcCCccCHHHHHHHHHHHhCC
Q 000869 2 GGIGKTTLVKEVARKARKDKL----FDRVVFSEVSQTIDIKKIQQAIAEKLGL 50 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 50 (1247)
+|+|||++|.+++........ =..++||+....++...+. ++++.++.
T Consensus 111 ~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 111 FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 799999999999876532111 1479999998877766544 44455543
No 282
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.07 E-value=3.1 Score=52.54 Aligned_cols=143 Identities=14% Similarity=0.190 Sum_probs=74.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+++++..... .+.++.... ... . .......+..+++......+.+|++|++
T Consensus 221 pGtGKT~laraia~~~~~~-----~i~i~~~~i------~~~----~-----~g~~~~~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 221 PGTGKTLLAKAVANEAGAY-----FISINGPEI------MSK----Y-----YGESEERLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred CCCChHHHHHHHHHHhCCe-----EEEEecHHH------hcc----c-----ccHHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 6999999999999876421 233332111 000 0 0112233445555555467789999998
Q ss_pred CCcc--------c-----chhhccCCCC-CCCCcEEEE-ecCChhhhh-hc----CCcceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKRV--------D-----LETVGIPFGD-DHRGCKLLL-TARDRTVLF-SM----GSEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~~--------~-----~~~l~~~~~~-~~~~~~vli-TtR~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
+... . ...+...+.. ...+..++| ||....-.. .+ .....+.++..+.++..+++..+..
T Consensus 281 d~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 281 DAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 6531 0 1112111111 112333444 554432111 11 1235677888899999999987763
Q ss_pred CCCCChhhHHHHHHHHHHcCCCchH
Q 000869 142 DDVENRELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~~~g~Pla 166 (1247)
...... ......+++.+.|.--+
T Consensus 361 ~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 361 NMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CCCCcc--ccCHHHHHHhCCCCCHH
Confidence 221111 12356778888886543
No 283
>PRK04328 hypothetical protein; Provisional
Probab=88.05 E-value=1.7 Score=46.35 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...... -+.++|++..+.
T Consensus 32 pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 7999999999998775322 467899987663
No 284
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=87.96 E-value=2.2 Score=45.33 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCccHHHHHHHHHHHhhh--ccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHHH------HHHH
Q 000869 2 GGIGKTTLVKEVARKARK--DKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSRA------SRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~--~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~~------~~~~ 65 (1247)
+|+|||+|+..++++... +..-+.++++-+++. .+..++.+.+...=.+... .+....+. ..+-
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 689999999999887541 112467888888764 4566677766544222110 11111111 2223
Q ss_pred HHHh--cCCeEEEEEeCCCCc
Q 000869 66 EQLK--REEKILIILDNIWKR 84 (1247)
Q Consensus 66 ~~l~--~~~~~LlvlDd~~~~ 84 (1247)
++++ .++++|+++||+-.-
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHhccCCeEEEEEcChhHH
Confidence 3333 279999999998543
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.77 E-value=2.4 Score=44.52 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=26.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAI 44 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 44 (1247)
+|+||||+|.+++...... =..++|++... +..++.+++
T Consensus 33 ~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH
Confidence 6999999998887766422 25678887443 345555554
No 286
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.77 E-value=0.31 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=14.3
Q ss_pred ccCccEEEEccccCchhcch
Q 000869 1080 FWNLTSLEVSSCKKLINLVA 1099 (1247)
Q Consensus 1080 ~~~L~~L~i~~C~~l~~~~~ 1099 (1247)
+++|++|+|++|+++++...
T Consensus 1 c~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHH
Confidence 45677888888888777643
No 287
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.77 E-value=2.1 Score=45.01 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=30.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQ 42 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 42 (1247)
||+||||+|..++.....+ =..|.-++.....+......
T Consensus 11 GGvGKTT~a~nLA~~la~~--G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASD--GKRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHH
Confidence 8999999999999988754 23677888887777655443
No 288
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.65 E-value=1.8 Score=46.15 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=41.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||-||.+++++.. + .--.|.++++ .++..++...... .....++.+.+ .+-=||||||+
T Consensus 114 ~G~GKThLa~Ai~~~l~-~-~g~sv~f~~~------~el~~~Lk~~~~~-------~~~~~~l~~~l--~~~dlLIiDDl 176 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-K-AGISVLFITA------PDLLSKLKAAFDE-------GRLEEKLLREL--KKVDLLIIDDI 176 (254)
T ss_pred CCCcHHHHHHHHHHHHH-H-cCCeEEEEEH------HHHHHHHHHHHhc-------CchHHHHHHHh--hcCCEEEEecc
Confidence 69999999999999998 3 2345777654 4455555544432 11112233333 35668999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
.-.
T Consensus 177 G~~ 179 (254)
T COG1484 177 GYE 179 (254)
T ss_pred cCc
Confidence 764
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=87.61 E-value=2.1 Score=43.43 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...... =..++|++....
T Consensus 8 ~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 8 PGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 7999999999998876532 356889987543
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.33 E-value=1.2 Score=52.08 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=42.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHhcCCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE--TESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
+|+|||||+.+++...... -..++|++..+.. ..+. .-++.++...... ......+.+.+.+...+.-++|+|
T Consensus 89 pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVID 163 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIK-LRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVID 163 (446)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEe
Confidence 6999999999999877532 3578999875432 3322 2255565432110 001112334444433455567777
Q ss_pred CCC
Q 000869 80 NIW 82 (1247)
Q Consensus 80 d~~ 82 (1247)
.+.
T Consensus 164 SIq 166 (446)
T PRK11823 164 SIQ 166 (446)
T ss_pred chh
Confidence 764
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.29 E-value=1.1 Score=52.85 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHH-hcCCeEEEEEe
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQL-KREEKILIILD 79 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlD 79 (1247)
.+|+||||||.-+|++.- | .|+=|++++..+...+-..|...+..... + ..+++.-||+|
T Consensus 334 ppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~--------------l~adsrP~CLViD 394 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV--------------LDADSRPVCLVID 394 (877)
T ss_pred CCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc--------------cccCCCcceEEEe
Confidence 379999999999998632 3 68889999999988877777655432211 1 12578888999
Q ss_pred CCCCc
Q 000869 80 NIWKR 84 (1247)
Q Consensus 80 d~~~~ 84 (1247)
.+|..
T Consensus 395 EIDGa 399 (877)
T KOG1969|consen 395 EIDGA 399 (877)
T ss_pred cccCC
Confidence 88765
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=87.27 E-value=2.7 Score=44.92 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=45.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCC-CccccchHHHHHHHHHHHh---cCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGL-VLQEETESSRASRLHEQLK---REEKILII 77 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~---~~~~~Llv 77 (1247)
.|.||||+|.+++-..... -..++||+....++...+.+-....+.. -.......+.+.++.+.+. ..+--|+|
T Consensus 69 ~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvV 146 (279)
T COG0468 69 ESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLV 146 (279)
T ss_pred CCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEE
Confidence 5899999999988766533 4589999999888877544333321211 1111122222222222222 12367888
Q ss_pred EeCCC
Q 000869 78 LDNIW 82 (1247)
Q Consensus 78 lDd~~ 82 (1247)
+|.+-
T Consensus 147 VDSva 151 (279)
T COG0468 147 VDSVA 151 (279)
T ss_pred EecCc
Confidence 88874
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.15 E-value=3 Score=46.46 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc-CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR-EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlD 79 (1247)
.|+||||++..++...... -..|.++++..... ...-++..++.++.+.........+....+.+.. +..-++++|
T Consensus 215 tGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 215 TGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5999999999999877533 34688888765543 3445666777777655433333334444444431 345677778
Q ss_pred CCCC
Q 000869 80 NIWK 83 (1247)
Q Consensus 80 d~~~ 83 (1247)
-...
T Consensus 293 TAGr 296 (407)
T PRK12726 293 TVGR 296 (407)
T ss_pred CCCC
Confidence 7754
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.14 E-value=2.1 Score=49.43 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||++.+++........-..|..++...... ....++..++.++.+................+ ...-++|+|.
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--~~~DlVlIDt 307 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--RDCDVILIDT 307 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--CCCCEEEEeC
Confidence 79999999999988765112235688888765432 22334455666666554333333333333333 2457788897
Q ss_pred CC
Q 000869 81 IW 82 (1247)
Q Consensus 81 ~~ 82 (1247)
..
T Consensus 308 ~G 309 (424)
T PRK05703 308 AG 309 (424)
T ss_pred CC
Confidence 63
No 295
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=86.92 E-value=1.6 Score=50.95 Aligned_cols=76 Identities=24% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHhcCCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE--TESSRASRLHEQLKREEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~LlvlD 79 (1247)
+|+||||++.+++...... -..++|++..+. ..++. .-+..++...... ........+...+.+.+.-++|+|
T Consensus 103 pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVID 177 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVID 177 (454)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEe
Confidence 6999999999998876543 246889987643 22222 2234455432110 001112334444443455667777
Q ss_pred CCC
Q 000869 80 NIW 82 (1247)
Q Consensus 80 d~~ 82 (1247)
.+.
T Consensus 178 SIq 180 (454)
T TIGR00416 178 SIQ 180 (454)
T ss_pred cch
Confidence 764
No 296
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=86.44 E-value=2.1 Score=52.62 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc------ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ------EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||||.+++...... =..++||+.....+. ..++++|.+.. ..........+...+..+.--+
T Consensus 69 ~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 69 ESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 6999999999987655432 367899998877763 36677776432 1122222233333344467788
Q ss_pred EEEeCCC
Q 000869 76 IILDNIW 82 (1247)
Q Consensus 76 lvlDd~~ 82 (1247)
+|+|.+.
T Consensus 142 VVIDSI~ 148 (790)
T PRK09519 142 VVIDSVA 148 (790)
T ss_pred EEEcchh
Confidence 9999975
No 297
>PHA02518 ParA-like protein; Provisional
Probab=86.32 E-value=2.3 Score=44.30 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQ 41 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 41 (1247)
||+||||+|..++...... =..|.-|++....+.....
T Consensus 10 GGvGKTT~a~~la~~la~~--g~~vlliD~D~q~~~~~~~ 47 (211)
T PHA02518 10 GGAGKTTVATNLASWLHAD--GHKVLLVDLDPQGSSTDWA 47 (211)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChHHHH
Confidence 8999999999999888743 2468888888776655543
No 298
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=14 Score=41.84 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=75.8
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.+|.|||+++.++|+... |+. +=+.+....+..+ ++.++.. ...+.+||+.|
T Consensus 243 PPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~kSIivIED 294 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNKSILLIED 294 (457)
T ss_pred CCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-HHHHHHh----------------------CCCCcEEEEee
Confidence 389999999999998866 432 3234443333332 2222211 25777777777
Q ss_pred CCCcccc-----------h------------hhccCCCCCCCCcEEEE-ecCChhhhh----hcCC-cceEEcCCCCHHH
Q 000869 81 IWKRVDL-----------E------------TVGIPFGDDHRGCKLLL-TARDRTVLF----SMGS-EKNFLVDILKEEE 131 (1247)
Q Consensus 81 ~~~~~~~-----------~------------~l~~~~~~~~~~~~vli-TtR~~~~~~----~~~~-~~~~~l~~l~~~e 131 (1247)
+|-.-+. + .+..-+...+.+-|||| ||-..+-.. +.|. ...+.++-=+...
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 7643110 0 01111111222445555 775554433 2122 2356677778888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHh
Q 000869 132 AWRLFKLMAGDDVENRELKSTATEVAKACKGLPIALTTIARALR 175 (1247)
Q Consensus 132 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~ 175 (1247)
-..|+..+.+...+ ...+.+|.+...+.-+.=..+|..+-
T Consensus 375 fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 375 FKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred HHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 88888888864332 23445555555555444445555443
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.17 E-value=2.7 Score=47.67 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=48.5
Q ss_pred CCccHHHHHHHHHHHhhhc--cCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARKD--KLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIIL 78 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~--~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Llvl 78 (1247)
.|+||||.+..++...... ..-..|..+++.... ....-++..++.++.+................+ ...-++|+
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLI 260 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLV 260 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEE
Confidence 6999999999999877532 122456667665432 233346666777777654433333333333333 35568888
Q ss_pred eCCCC
Q 000869 79 DNIWK 83 (1247)
Q Consensus 79 Dd~~~ 83 (1247)
|-+..
T Consensus 261 DTaGr 265 (388)
T PRK12723 261 DTIGK 265 (388)
T ss_pred cCCCC
Confidence 98754
No 300
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.08 E-value=0.67 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=11.4
Q ss_pred CCCcEEEccCCCCCcCchh
Q 000869 416 KNLEILSFSGSGIVKLPEE 434 (1247)
Q Consensus 416 ~~L~~L~L~~~~i~~lp~~ 434 (1247)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 301
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.08 E-value=0.67 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=11.4
Q ss_pred CCCcEEEccCCCCCcCchh
Q 000869 416 KNLEILSFSGSGIVKLPEE 434 (1247)
Q Consensus 416 ~~L~~L~L~~~~i~~lp~~ 434 (1247)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 302
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.98 E-value=3.4 Score=46.15 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc-CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR-EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlD 79 (1247)
+|+||||++.+++...... . ..|..++..... ...+-++..++.++.+.........+......+.. ...=++++|
T Consensus 250 tGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLID 327 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred CCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 7999999999999887633 2 356667765433 22333444555666555433333333334444432 123566778
Q ss_pred CCCC
Q 000869 80 NIWK 83 (1247)
Q Consensus 80 d~~~ 83 (1247)
-...
T Consensus 328 TaGR 331 (436)
T PRK11889 328 TAGK 331 (436)
T ss_pred Cccc
Confidence 7654
No 303
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.92 E-value=2.4 Score=47.99 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=42.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+|+||||+|.+++........ ..|..++...... ....++..++.++.+..... ....+...+.....-++|+|-
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~---~~~~l~~~l~~~~~D~VLIDT 307 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKFKETLARDGSELILIDT 307 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehH---HHHHHHHHHHhCCCCEEEEeC
Confidence 799999999999976532211 2455565544332 33445555666666543221 233444444433445588884
Q ss_pred C
Q 000869 81 I 81 (1247)
Q Consensus 81 ~ 81 (1247)
.
T Consensus 308 a 308 (432)
T PRK12724 308 A 308 (432)
T ss_pred C
Confidence 3
No 304
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=85.78 E-value=2.5 Score=41.81 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcC-CeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKRE-EKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~LlvlDd 80 (1247)
+|.|||++|.+++.. ....++|+.-....+.+ +.+.|.+--......-...+....+.+.+.+. +.-.+++|.
T Consensus 8 ~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 8 ARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred CCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999875 13578888777766554 44444321111111111222223333333221 334788898
Q ss_pred C
Q 000869 81 I 81 (1247)
Q Consensus 81 ~ 81 (1247)
+
T Consensus 82 l 82 (169)
T cd00544 82 L 82 (169)
T ss_pred H
Confidence 6
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=85.76 E-value=0.98 Score=43.49 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVS 32 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~ 32 (1247)
++|.||||||+++.+.+... -..+++++..
T Consensus 10 lsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD 39 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFAR--GIKVYLLDGD 39 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TS-EEEEEHH
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEecCc
Confidence 47999999999999999855 5678888743
No 306
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.72 E-value=2 Score=46.09 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc---cCHHHHHHHHH--HH--hCCCccccchHHHHHHHHHHHhcCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT---IDIKKIQQAIA--EK--LGLVLQEETESSRASRLHEQLKREEKI 74 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~--~~--l~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (1247)
.|.||||+.+.++...... .+-++++-... .+..++...+. .+ ++......+.......+...++.-.+-
T Consensus 120 ~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~ 196 (270)
T TIGR02858 120 PQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMSPD 196 (270)
T ss_pred CCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCCCC
Confidence 6999999999999776532 34455432221 11222222111 11 111111111222233344444445788
Q ss_pred EEEEeCCCCcccchhhccCCCCCCCCcEEEEecCChhh
Q 000869 75 LIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTV 112 (1247)
Q Consensus 75 LlvlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~ 112 (1247)
++|+|.+...+.+.++...+. .|..||+||-+..+
T Consensus 197 villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 197 VIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred EEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 999999987766666544432 47779999976655
No 307
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.66 E-value=3.1 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI 35 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~ 35 (1247)
+|+|||++|.+++...... =..++|++...+.
T Consensus 45 pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQASR--GNPVLFVTVESPA 76 (259)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCc
Confidence 7999999999998765422 3578899887533
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.60 E-value=1.9 Score=42.55 Aligned_cols=20 Identities=45% Similarity=0.709 Sum_probs=17.6
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 000869 1 MGGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~ 20 (1247)
.+|+||||+|++.++..+..
T Consensus 9 yPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CCCCCchHHHHHHHHHHHHh
Confidence 48999999999999998854
No 309
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=85.48 E-value=3.2 Score=47.92 Aligned_cols=81 Identities=26% Similarity=0.389 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
+|+|||+|+.++++..... +-+.++++-+++. ....++...+...-++.. .......+. ..+-++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEy 230 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEY 230 (461)
T ss_pred CCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999887643 4577778777654 556667666654322111 011111111 223333
Q ss_pred Hh--cCCeEEEEEeCCCC
Q 000869 68 LK--REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~--~~~~~LlvlDd~~~ 83 (1247)
++ .++++|+++|++-.
T Consensus 231 frd~~G~~VLl~~DslTR 248 (461)
T PRK12597 231 LRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHhcCCceEEEeccchH
Confidence 33 27999999999854
No 310
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.40 E-value=3.5 Score=52.27 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.+++..... | +-++++...+..++...-....|. ....+.+...... ..+-+++||.+
T Consensus 356 pG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~~~~~~g~------~~g~i~~~l~~~~-~~~~villDEi 423 (775)
T TIGR00763 356 PGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGHRRTYVGA------MPGRIIQGLKKAK-TKNPLFLLDEI 423 (775)
T ss_pred CCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCCCCceeCC------CCchHHHHHHHhC-cCCCEEEEech
Confidence 7999999999999987522 3 223333333332221100000010 1111112222222 23347889999
Q ss_pred CCccc------chhhccCC--------CCC-------CCCcEEEEecCChhhhh--hcCCcceEEcCCCCHHHHHHHHHH
Q 000869 82 WKRVD------LETVGIPF--------GDD-------HRGCKLLLTARDRTVLF--SMGSEKNFLVDILKEEEAWRLFKL 138 (1247)
Q Consensus 82 ~~~~~------~~~l~~~~--------~~~-------~~~~~vliTtR~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~ 138 (1247)
+.... ..++...+ ... ..+..+|.||....... .......+++.+++.++-.+++..
T Consensus 424 dk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~ 503 (775)
T TIGR00763 424 DKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKK 503 (775)
T ss_pred hhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHH
Confidence 87521 01111111 110 02333444554332111 223445888999999888888876
Q ss_pred Hh
Q 000869 139 MA 140 (1247)
Q Consensus 139 ~~ 140 (1247)
+.
T Consensus 504 ~l 505 (775)
T TIGR00763 504 YL 505 (775)
T ss_pred HH
Confidence 54
No 311
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=14 Score=37.73 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=83.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++||+... +-||.++... -+++-|.+ -...+.+++--.+...+.++..|.+
T Consensus 190 pgtGktLlaraVahht~-------c~firvsgse---lvqk~ige----------gsrmvrelfvmarehapsiifmdei 249 (404)
T KOG0728|consen 190 PGTGKTLLARAVAHHTD-------CTFIRVSGSE---LVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEI 249 (404)
T ss_pred CCCchhHHHHHHHhhcc-------eEEEEechHH---HHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecc
Confidence 69999999999998644 3356665432 22332221 1233445555454456777777888
Q ss_pred CCccc-----------------chhhccCCCC--CCCCcEEEEecCChhhhh----hc-CCcceEEcCCCCHHHHHHHHH
Q 000869 82 WKRVD-----------------LETVGIPFGD--DHRGCKLLLTARDRTVLF----SM-GSEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 82 ~~~~~-----------------~~~l~~~~~~--~~~~~~vliTtR~~~~~~----~~-~~~~~~~l~~l~~~ea~~l~~ 137 (1247)
+.... ++-+ ..+.. ....-+||..|..-++.. +. .....++.++-+++...++++
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlell-nqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELL-NQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHH-HhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 75410 1111 11111 234667888886666544 11 234577888888888888887
Q ss_pred HHhCCCCC--ChhhHHHHHHHHHHcCCCchHHHHHHHHHh
Q 000869 138 LMAGDDVE--NRELKSTATEVAKACKGLPIALTTIARALR 175 (1247)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~i~~~~~g~Plai~~~a~~l~ 175 (1247)
-+...-+. ..+++.+|.++.-..|.--.+++.-|++.+
T Consensus 329 ihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~a 368 (404)
T KOG0728|consen 329 IHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYA 368 (404)
T ss_pred HhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHH
Confidence 77632121 223333333333322333455666666653
No 312
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=85.03 E-value=0.64 Score=43.23 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
.+|+||||+|+++++..
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999875
No 313
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=84.98 E-value=8.8 Score=41.43 Aligned_cols=57 Identities=7% Similarity=0.024 Sum_probs=30.9
Q ss_pred CCeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCC-hhhhhh-cCCcceEEcCCC
Q 000869 71 EEKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARD-RTVLFS-MGSEKNFLVDIL 127 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~-~~~~~~-~~~~~~~~l~~l 127 (1247)
++.-++|+|+++.. +...++.-.+-.-..++.+|++|.+ ..+... ......+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 56778899999875 3334443333333334555544444 444332 344667777654
No 314
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=1.7 Score=44.27 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-.|++|+++.. .+||.+-. -+-+++-+. +-...+.++++-.+.++.|++.||.+
T Consensus 220 pgtgktl~aravanrtd-------acfirvig---selvqkyvg----------egarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 220 PGTGKTLCARAVANRTD-------ACFIRVIG---SELVQKYVG----------EGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred CCCchhHHHHHHhcccC-------ceEEeehh---HHHHHHHhh----------hhHHHHHHHHHHhcccceEEEEeecc
Confidence 79999999999998643 22333211 111222211 22445567777777678899999998
Q ss_pred CC
Q 000869 82 WK 83 (1247)
Q Consensus 82 ~~ 83 (1247)
+.
T Consensus 280 da 281 (435)
T KOG0729|consen 280 DA 281 (435)
T ss_pred cc
Confidence 64
No 315
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=84.81 E-value=3.8 Score=46.85 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=48.4
Q ss_pred CCccHHHHHHHHHHHhhhcc--CCC---------eEEEEEcCCccCHHHHHHHHHHHhC-CCcc-------ccchHHHH-
Q 000869 2 GGIGKTTLVKEVARKARKDK--LFD---------RVVFSEVSQTIDIKKIQQAIAEKLG-LVLQ-------EETESSRA- 61 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~--~f~---------~~~w~~~~~~~~~~~~~~~i~~~l~-~~~~-------~~~~~~~~- 61 (1247)
+|+|||||+..++++....+ ..| .+++.-+++.....+.+.+.+..-+ +... ......+.
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 69999999999998765100 012 5677777777666665555555444 2211 11111111
Q ss_pred -----HHHHHHHh--cCCeEEEEEeCCCC
Q 000869 62 -----SRLHEQLK--REEKILIILDNIWK 83 (1247)
Q Consensus 62 -----~~~~~~l~--~~~~~LlvlDd~~~ 83 (1247)
..+-++++ .|+++|+++||+-.
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 22334444 38999999999854
No 316
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.70 E-value=3.9 Score=43.29 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccc---------------------cchHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQE---------------------ETESSR 60 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~---------------------~~~~~~ 60 (1247)
+|+|||++|.+++...... =..++|++..+. ...+.+++ ..++....+ ......
T Consensus 34 ~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~l 108 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKL 108 (234)
T ss_pred CCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHHHH
Confidence 6999999999997765322 467999998654 34444443 333322110 111233
Q ss_pred HHHHHHHHhcCCeEEEEEeCCC
Q 000869 61 ASRLHEQLKREEKILIILDNIW 82 (1247)
Q Consensus 61 ~~~~~~~l~~~~~~LlvlDd~~ 82 (1247)
...+.+.+...+.-++|+|.+.
T Consensus 109 l~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 109 LELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHHhcCCCEEEEecHH
Confidence 3444444443466688899875
No 317
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=84.48 E-value=0.48 Score=43.35 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=16.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRV 26 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~ 26 (1247)
+|+|||++|+.++.....+ |.++
T Consensus 8 PG~GKT~la~~lA~~~~~~--f~RI 30 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLGLS--FKRI 30 (131)
T ss_dssp --HHHHHHHHHHHHHTT----EEEE
T ss_pred CccHHHHHHHHHHHHcCCc--eeEE
Confidence 7999999999999987644 6554
No 318
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=84.46 E-value=2 Score=47.55 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
++|+||||+|+.+++.......+ .+.+++..+
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 57999999999999888632223 355555443
No 319
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=84.43 E-value=3.7 Score=47.10 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=49.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~ 67 (1247)
+|+|||+|+.++++.... .+-+.++|+-+++. ....++.+.+...=.+.. .......+ ...+-++
T Consensus 147 ~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEy 225 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEY 225 (449)
T ss_pred CCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999887542 22367888877654 446666666654322111 11111111 1233344
Q ss_pred Hh--cCCeEEEEEeCCCCc
Q 000869 68 LK--REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~--~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 226 frd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 226 FRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHhcCCceEEEecChHHH
Confidence 44 379999999998543
No 320
>CHL00206 ycf2 Ycf2; Provisional
Probab=84.41 E-value=5.7 Score=53.08 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCccc-------chhhccCCCC-----CCCCcEEEEecCChhhhh----hcC-CcceEE
Q 000869 61 ASRLHEQLKREEKILIILDNIWKRVD-------LETVGIPFGD-----DHRGCKLLLTARDRTVLF----SMG-SEKNFL 123 (1247)
Q Consensus 61 ~~~~~~~l~~~~~~LlvlDd~~~~~~-------~~~l~~~~~~-----~~~~~~vliTtR~~~~~~----~~~-~~~~~~ 123 (1247)
+..+.+..++..+|+|.+|++++... +..+...+.. ...|--||-+|-.+.+.. +.+ -...+.
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~ 1800 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1800 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEE
Confidence 45556666667899999999987621 2222222211 112334555665454433 111 245777
Q ss_pred cCCCCHHHHHHHHH
Q 000869 124 VDILKEEEAWRLFK 137 (1247)
Q Consensus 124 l~~l~~~ea~~l~~ 137 (1247)
++.++..+..+.|.
T Consensus 1801 Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1801 IRRLLIPQQRKHFF 1814 (2281)
T ss_pred eCCCCchhHHHHHH
Confidence 77666554444443
No 321
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.38 E-value=3.6 Score=42.29 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKI 40 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 40 (1247)
||+||||++..++.....+ =..|.-|+......+...
T Consensus 11 GGaGKTT~~~~LAs~la~~--G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAAR--GARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEeCCCCCcHHHH
Confidence 8999999999999998754 467888888877766644
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.30 E-value=3 Score=48.14 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCcccc----chHHHHHHHHHHHhcCCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEE----TESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~L 75 (1247)
.+|+||||.|..++...... . ..|..+++.... ...+.++.++.+++.+.... +....+....++.. +. -+
T Consensus 103 ~~GsGKTTtaakLA~~L~~~-g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~-Dv 178 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKK-G-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KA-DV 178 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHc-C-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cC-CE
Confidence 37999999999999888743 2 355556654332 23445666777776654322 12222333344443 23 56
Q ss_pred EEEeCCCC
Q 000869 76 IILDNIWK 83 (1247)
Q Consensus 76 lvlDd~~~ 83 (1247)
+|+|-...
T Consensus 179 VIIDTAGr 186 (437)
T PRK00771 179 IIVDTAGR 186 (437)
T ss_pred EEEECCCc
Confidence 78888743
No 323
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=84.15 E-value=3.1 Score=42.35 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ 53 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 53 (1247)
||+||||+|...+.+...++. ..|.-|++....++. .+||...+
T Consensus 9 GG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 899999999997777664432 457778877766544 56777665
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.00 E-value=4 Score=41.11 Aligned_cols=70 Identities=24% Similarity=0.205 Sum_probs=43.2
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
++|+||||=+...++..-.+.+=+++.=.++++...+.-+-..|- ..++-+..+-.++.-.+|+|.
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK--------------~FAQ~kv~lp~grhKIiILDE 121 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK--------------MFAQKKVTLPPGRHKIIILDE 121 (333)
T ss_pred CCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH--------------HHHHhhccCCCCceeEEEeec
Confidence 689999999999999987555556677677666554433322221 000000111126777889999
Q ss_pred CCCc
Q 000869 81 IWKR 84 (1247)
Q Consensus 81 ~~~~ 84 (1247)
+|..
T Consensus 122 ADSM 125 (333)
T KOG0991|consen 122 ADSM 125 (333)
T ss_pred cchh
Confidence 9875
No 325
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.95 E-value=1.2 Score=48.14 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=28.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIK 38 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~ 38 (1247)
||+||||+|-.++....... -..|..|+.....+..
T Consensus 12 GGvGKTT~a~nLa~~La~~~-~~kVLliDlDpQ~s~t 47 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRG-GKKVLLIDLDPQGSLT 47 (259)
T ss_pred CCccHHHHHHHHHHHHHHhc-CCcEEEEeCCCcchhh
Confidence 89999999999999987321 2679999988765433
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=83.91 E-value=4.3 Score=45.09 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCcccc----chHHHHHHHHHHHhcCCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQEE----TESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~L 75 (1247)
++|+||||+++++++..... .+ .|+.++.... .....-++..+..++.+.... +....+....+.......-+
T Consensus 148 ~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~Dv 225 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDV 225 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCE
Confidence 47999999999999887643 23 4555654422 223334556677777544211 11222222222222222338
Q ss_pred EEEeCCCCc
Q 000869 76 IILDNIWKR 84 (1247)
Q Consensus 76 lvlDd~~~~ 84 (1247)
+++|-+...
T Consensus 226 VLIDTaGr~ 234 (336)
T PRK14974 226 VLIDTAGRM 234 (336)
T ss_pred EEEECCCcc
Confidence 888988654
No 327
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.90 E-value=0.033 Score=55.26 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=73.4
Q ss_pred ccccCCCCcEEEccCcCCCCc-ccccCCCCCcEEEccCCCCCcCchhhcCCCCCcEEeccCCCCCcccChhhhcCCCCCC
Q 000869 389 SIDHLLNLQTLCLDQCILGDV-AIIGKLKNLEILSFSGSGIVKLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLE 467 (1247)
Q Consensus 389 ~l~~l~~L~~L~L~~~~l~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~~~~L~~L~ 467 (1247)
.+.....-.+||++.|++..+ ..++.+..|..||++.+.+..+|..++.+..++++++.+| ..+..| .+++++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p-~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQP-KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCC-ccccccCCcc
Confidence 466778889999999988777 7788899999999999999999999999999999999887 777774 4588999999
Q ss_pred EEEeecCcc
Q 000869 468 ELYMSNCFV 476 (1247)
Q Consensus 468 ~L~l~~~~~ 476 (1247)
.+++.++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 988877643
No 328
>PRK10867 signal recognition particle protein; Provisional
Probab=83.81 E-value=4.4 Score=46.66 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=30.5
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLV 51 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~ 51 (1247)
.+|+||||.|..++....... -..|..+++..... ..+-++..++..+.+
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 379999999999998776431 23466666654332 223344456665544
No 329
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=83.78 E-value=1.9 Score=43.42 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHHhhhc-cCCC--eEEEEEcCCccCH---HHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKD-KLFD--RVVFSEVSQTIDI---KKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-~~f~--~~~w~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||+.+.+++-...+ +.|- .|.-|+-+...-. ..=+..++.+...-.+ ..+.+ -+.-..++-.+=+
T Consensus 146 P~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~-cpk~~---gmmmaIrsm~PEV 221 (308)
T COG3854 146 PQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP-CPKAE---GMMMAIRSMSPEV 221 (308)
T ss_pred CCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc-chHHH---HHHHHHHhcCCcE
Confidence 7999999999999887753 3342 3555554332110 0011122222211111 11222 2233333457788
Q ss_pred EEEeCCCCcccchhhccCCCCCCCCcEEEEecC
Q 000869 76 IILDNIWKRVDLETVGIPFGDDHRGCKLLLTAR 108 (1247)
Q Consensus 76 lvlDd~~~~~~~~~l~~~~~~~~~~~~vliTtR 108 (1247)
+|.|.+...++..++... ...|.+++.|.-
T Consensus 222 iIvDEIGt~~d~~A~~ta---~~~GVkli~TaH 251 (308)
T COG3854 222 IIVDEIGTEEDALAILTA---LHAGVKLITTAH 251 (308)
T ss_pred EEEeccccHHHHHHHHHH---HhcCcEEEEeec
Confidence 999999988776655433 345777777654
No 330
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=3.3 Score=50.59 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=76.4
Q ss_pred CCccHHHHHHHHHHHhhhccCC-----CeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLF-----DRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILI 76 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 76 (1247)
+|||||++|.-++.+...++-. ..++-.+++. -+....-..+-.++...+.+.+.+..++.|
T Consensus 200 pGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~-------------LvAGakyRGeFEeRlk~vl~ev~~~~~vIL 266 (786)
T COG0542 200 PGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS-------------LVAGAKYRGEFEERLKAVLKEVEKSKNVIL 266 (786)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH-------------HhccccccCcHHHHHHHHHHHHhcCCCeEE
Confidence 5999999999999988654322 2233233221 111222223445677777777776569999
Q ss_pred EEeCCCCcc----------cchhhccCCCCCCCCcEEEEecCChhh---hh---hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 77 ILDNIWKRV----------DLETVGIPFGDDHRGCKLLLTARDRTV---LF---SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 77 vlDd~~~~~----------~~~~l~~~~~~~~~~~~vliTtR~~~~---~~---~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
.+|.++... +...+.-|....|.--.|--||-+..- .+ ..+..+.+.|++.+.+++...++-..
T Consensus 267 FIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 267 FIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred EEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 999987641 122233333334444446667733321 11 12456789999999999999998776
No 331
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=83.58 E-value=21 Score=42.65 Aligned_cols=168 Identities=18% Similarity=0.129 Sum_probs=95.7
Q ss_pred CCccHHHHHHHHHHHhhh---ccCCCe--EEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHh----cCC
Q 000869 2 GGIGKTTLVKEVARKARK---DKLFDR--VVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLK----REE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~---~~~f~~--~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~ 72 (1247)
+|.|||+.+.+|.+.... .+.-.. .+.|+.-.-.+..+++..|...+..... ......+.+..++. +.+
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~ 508 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRS 508 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCC
Confidence 799999999999997752 222222 2345555667799999999999876543 23344455556655 246
Q ss_pred eEEEEEeCCCCc-----ccchhhccCCCCCCCCcEEEEecC--Chhhhh-----hc---CCcceEEcCCCCHHHHHHHHH
Q 000869 73 KILIILDNIWKR-----VDLETVGIPFGDDHRGCKLLLTAR--DRTVLF-----SM---GSEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 73 ~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~vliTtR--~~~~~~-----~~---~~~~~~~l~~l~~~ea~~l~~ 137 (1247)
.+++++|++|.. +.+..+. -|+ ..+++|++|.+= ...... +. -....+...+.+..+-.+++.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~f-dWp-t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~ 586 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIF-DWP-TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIIS 586 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHh-cCC-cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHH
Confidence 788888998653 2233332 222 345777666441 111111 00 122356667788888888877
Q ss_pred HHhCC--CCCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 000869 138 LMAGD--DVENRELKSTATEVAKACKGLPIALTTIARA 173 (1247)
Q Consensus 138 ~~~~~--~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 173 (1247)
..... .......+-++++|+.--|-.-.|+.+.-+.
T Consensus 587 ~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 587 ARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 77732 1222223334555555555555555444333
No 332
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=83.42 E-value=3.2 Score=41.33 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI 35 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~ 35 (1247)
||+||||+|..++...... =..|.-|+.....
T Consensus 9 gG~GKTt~a~~LA~~la~~--g~~vllvD~D~q~ 40 (169)
T cd02037 9 GGVGKSTVAVNLALALAKL--GYKVGLLDADIYG 40 (169)
T ss_pred CcCChhHHHHHHHHHHHHc--CCcEEEEeCCCCC
Confidence 8999999999999988743 2356667765444
No 333
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=83.40 E-value=1.7 Score=46.99 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred CeEEEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCC
Q 000869 72 EKILIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARD 109 (1247)
Q Consensus 72 ~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~ 109 (1247)
...++|+|.+++. .++..+ +...|.|+||+.|--.
T Consensus 351 ~~~FiIIDEaQNLTpheikTi---ltR~G~GsKIVl~gd~ 387 (436)
T COG1875 351 PDSFIIIDEAQNLTPHELKTI---LTRAGEGSKIVLTGDP 387 (436)
T ss_pred ccceEEEehhhccCHHHHHHH---HHhccCCCEEEEcCCH
Confidence 5678999999875 334443 3446789998888543
No 334
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.34 E-value=6.2 Score=38.82 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEE---EEEcCCccCHHHHHHHHH---HHhCCC--cccc---chHHHH----HHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVV---FSEVSQTIDIKKIQQAIA---EKLGLV--LQEE---TESSRA----SRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~---w~~~~~~~~~~~~~~~i~---~~l~~~--~~~~---~~~~~~----~~~~~ 66 (1247)
.|.||||.|...+.+.... .+ .|+ |+.-.....-..+++.+. .+.+.. .... ...... +....
T Consensus 14 ~GkGKtt~a~g~a~ra~~~-g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~~ 91 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALGH-GK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQHAKE 91 (173)
T ss_pred CCCChHHHHHHHHHHHHHC-CC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHHHHHH
Confidence 5899999999999887633 23 333 444332222333333321 001111 0001 111112 33344
Q ss_pred HHhcCCeEEEEEeCCCCc-----ccchhhccCCCCCCCCcEEEEecCChhh
Q 000869 67 QLKREEKILIILDNIWKR-----VDLETVGIPFGDDHRGCKLLLTARDRTV 112 (1247)
Q Consensus 67 ~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~vliTtR~~~~ 112 (1247)
.+..+.-=++|||.+-.. -+.+.+...+.....+.-||+|-|+..-
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 444467789999998533 2223333334445567789999998854
No 335
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.32 E-value=0.89 Score=45.08 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=26.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID 36 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~ 36 (1247)
.|+|||.+|+++++.... +.....+-++.+....
T Consensus 12 sGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 12 SGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp TTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred CCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 699999999999998773 1256778888876655
No 336
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=83.20 E-value=5.2 Score=43.55 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHh-CCCcc-----ccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKL-GLVLQ-----EETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l-~~~~~-----~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||+|.+++...... .=..|+|+++... ..++...+...+ +.... .....+......+.+. +.+.+
T Consensus 39 ~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 114 (271)
T cd01122 39 TGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFE-GTGRL 114 (271)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhc-CCCcE
Confidence 6999999999998876422 1256889987663 344444443332 22221 1122233344444444 34445
Q ss_pred EEEeCCC
Q 000869 76 IILDNIW 82 (1247)
Q Consensus 76 lvlDd~~ 82 (1247)
.|.|...
T Consensus 115 ~i~d~~~ 121 (271)
T cd01122 115 FMYDSFG 121 (271)
T ss_pred EEEcCCC
Confidence 6666654
No 337
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.95 E-value=5.1 Score=46.17 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCcccc----chHHHHHHHHHHHhcCCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQEE----TESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~L 75 (1247)
.+|+||||.|..++.....+. -..|.-+++..... ..+-++..+...+.+.... +..+......+....+..-+
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~Dv 185 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDV 185 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 379999999999998865221 23566666654332 3344455566666543221 22233333444443233347
Q ss_pred EEEeCCC
Q 000869 76 IILDNIW 82 (1247)
Q Consensus 76 lvlDd~~ 82 (1247)
+|+|-..
T Consensus 186 VIIDTaG 192 (428)
T TIGR00959 186 VIVDTAG 192 (428)
T ss_pred EEEeCCC
Confidence 7778775
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.90 E-value=3.2 Score=49.31 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=44.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccc----------------cchHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQE----------------ETESSRASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~----------------~~~~~~~~~~~ 65 (1247)
+|+||||||.+++.....+ -+.++|+...+. ..++.+. ++.+|.+... ....+.+..+.
T Consensus 272 ~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 272 TGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 7999999999999887533 467888876553 3333333 3455543211 01133444555
Q ss_pred HHHhcCCeEEEEEeCCC
Q 000869 66 EQLKREEKILIILDNIW 82 (1247)
Q Consensus 66 ~~l~~~~~~LlvlDd~~ 82 (1247)
+.+...+.-.+|+|.+.
T Consensus 347 ~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 347 SEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHcCCCEEEEcCHH
Confidence 55544455566677664
No 339
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=82.83 E-value=1.6 Score=55.69 Aligned_cols=169 Identities=18% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCccHHHHHHHHHHHhhhccC--CCeEEEEEcCCccCHH------HHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCe
Q 000869 2 GGIGKTTLVKEVARKARKDKL--FDRVVFSEVSQTIDIK------KIQQAIAEKLGLVLQEETESSRASRLHEQLKREEK 73 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~--f~~~~w~~~~~~~~~~------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (1247)
+|.||||+..+++-....+.. =+..+++.+....... .+..-++..+.......... ... +.+.+..+
T Consensus 231 pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~---~~~-~e~l~~g~ 306 (824)
T COG5635 231 PGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLI---EAH-QELLKTGK 306 (824)
T ss_pred CCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhh---HHH-HHHHhccc
Confidence 699999999999987765421 1224555443221111 22222232232222111111 111 33444899
Q ss_pred EEEEEeCCCCccc------chhhccCCCCCCCCcEEEEecCChhhhhhcCCcceEEcCCCCHHHHHHHHH-----HHh--
Q 000869 74 ILIILDNIWKRVD------LETVGIPFGDDHRGCKLLLTARDRTVLFSMGSEKNFLVDILKEEEAWRLFK-----LMA-- 140 (1247)
Q Consensus 74 ~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~~~~~~l~~l~~~ea~~l~~-----~~~-- 140 (1247)
+++.+|++++... ...+ ..+.+..+.++||+|+|....-........+++..+.++.-.+... ...
T Consensus 307 ~llLlDGlDe~~~~~~~~~~~~i-~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~~~~ 385 (824)
T COG5635 307 LLLLLDGLDELEPKNQRALIREI-NKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAFIED 385 (824)
T ss_pred hhhHhhccchhhhhhHHHHHHHH-HHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999987621 1221 2233344588899999877554433334455566665554443332 111
Q ss_pred --CCCCCC--hh---hHHHHHHHHHHcCCCchHHHHHHHHHh
Q 000869 141 --GDDVEN--RE---LKSTATEVAKACKGLPIALTTIARALR 175 (1247)
Q Consensus 141 --~~~~~~--~~---~~~~~~~i~~~~~g~Plai~~~a~~l~ 175 (1247)
++.... .. ...-..+-++..+..|+++.+.+..-.
T Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 386 WFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred hhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 211111 01 111123334444888998888875444
No 340
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=6.7 Score=46.20 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||++|+++++.-... |+.+..+. +... .+ .+....+.+++++.+.-.++++.||.+
T Consensus 477 PGC~KT~lAkalAne~~~n-------FlsvkgpE----L~sk---~v------GeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGMN-------FLSVKGPE----LFSK---YV------GESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred CCcchHHHHHHHhhhhcCC-------eeeccCHH----HHHH---hc------CchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 7999999999999876543 34433321 1111 11 123445567777776667799999988
Q ss_pred CCccc-------------chhhccCCCCCCCCcEEEE--ec-CChhhhh-hcC---CcceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKRVD-------------LETVGIPFGDDHRGCKLLL--TA-RDRTVLF-SMG---SEKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~~~-------------~~~l~~~~~~~~~~~~vli--Tt-R~~~~~~-~~~---~~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
|...- +..+..-+-.......|+| .| |...+-. -++ ....+-++.-+.+.-.++|+.++.
T Consensus 537 Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 537 DALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred HhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 75411 1111111111111212333 33 3333221 112 356777888888899999999984
Q ss_pred CCCCChhhHHHHHHHHHHcCCCc
Q 000869 142 DDVENRELKSTATEVAKACKGLP 164 (1247)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~~~g~P 164 (1247)
.-.-. +. ....+++++..|.-
T Consensus 617 kmp~~-~~-vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 617 KMPFS-ED-VDLEELAQATEGYS 637 (693)
T ss_pred cCCCC-cc-ccHHHHHHHhccCC
Confidence 22111 11 22355566655543
No 341
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=82.60 E-value=1.9 Score=40.13 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR 70 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 70 (1247)
+|+||||+|.+++.... .-||++++...-..++...-+.... ...+++.....+-..+..
T Consensus 16 PG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y~c--~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEYKC--HILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccccC--ccccHHHHHHHHHHHHhc
Confidence 79999999999996543 2377777655444444433333221 223455555666666663
No 342
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=82.45 E-value=1.7 Score=44.50 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=27.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKI 40 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 40 (1247)
||+||||+|..++.....+ -..|+-++..........
T Consensus 8 GG~GKTt~a~~la~~la~~--g~~VlliD~D~~~~~~~~ 44 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARK--GKKVLLIDLDPQAPNLSI 44 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TS-EEEEEESTTSHHHHH
T ss_pred CCccHHHHHHHHHhccccc--cccccccccCcccccHHH
Confidence 8999999999999998863 456788887655444433
No 343
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.06 E-value=3.2 Score=39.40 Aligned_cols=30 Identities=17% Similarity=-0.038 Sum_probs=23.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEV 31 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~ 31 (1247)
.|.|||+.+..++.+.........++|+.-
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p 38 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAP 38 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcC
Confidence 699999999999988765434567787753
No 344
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.04 E-value=1.8 Score=53.78 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.++.... ...+.++.+....... +.+-+|.+..-.. .+....+...+......+++||++
T Consensus 497 ~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~----~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 497 TGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT----VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc----HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccH
Confidence 69999999999998763 2345556554333221 2222332211000 011112333344456789999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 567 eka 569 (758)
T PRK11034 567 EKA 569 (758)
T ss_pred hhh
Confidence 876
No 345
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.03 E-value=12 Score=39.41 Aligned_cols=141 Identities=26% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++|+.+.... |++++... +..... | +....+..+++-.+..++.+|.+|.+
T Consensus 175 PGTGKSYLAKAVATEAnST-------FFSvSSSD----LvSKWm---G------ESEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 175 PGTGKSYLAKAVATEANST-------FFSVSSSD----LVSKWM---G------ESEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred CCCcHHHHHHHHHhhcCCc-------eEEeehHH----HHHHHh---c------cHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 7999999999999875422 34444322 111111 1 12334455666666678999999998
Q ss_pred CCc---------ccc-----hhhccCC--CCCCCCcEEEEecCChhhhhh---cCCcceEEcCCCCHHHHHHHHHHHhCC
Q 000869 82 WKR---------VDL-----ETVGIPF--GDDHRGCKLLLTARDRTVLFS---MGSEKNFLVDILKEEEAWRLFKLMAGD 142 (1247)
Q Consensus 82 ~~~---------~~~-----~~l~~~~--~~~~~~~~vliTtR~~~~~~~---~~~~~~~~l~~l~~~ea~~l~~~~~~~ 142 (1247)
+.. +.- +-+.+.- .....|.-||=.|..+-++.. .+....+-++--....-..+|.-+.|+
T Consensus 235 Dslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 235 DSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD 314 (439)
T ss_pred hhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC
Confidence 742 111 1121111 112234545556655544331 111222223333344556678888875
Q ss_pred CCCChhhHHHHHHHHHHcCCC
Q 000869 143 DVENRELKSTATEVAKACKGL 163 (1247)
Q Consensus 143 ~~~~~~~~~~~~~i~~~~~g~ 163 (1247)
. +..-.++..+.++++..|.
T Consensus 315 t-p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 315 T-PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred C-ccccchhhHHHHHhhcCCC
Confidence 3 3333445667777777664
No 346
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.93 E-value=5.5 Score=42.99 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=44.0
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCccc----cchHHHH-HHHHHHHhcCCeE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQE----ETESSRA-SRLHEQLKREEKI 74 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~-~~~~~~l~~~~~~ 74 (1247)
.+|+||||.+.+++...... -..|..++...... ...-++..++..+..... .+..... ..+..... +..-
T Consensus 80 ~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-~~~D 156 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-RNID 156 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-CCCC
Confidence 47999999999999887643 34677787664322 223334455665543211 1112222 22222222 4455
Q ss_pred EEEEeCCCC
Q 000869 75 LIILDNIWK 83 (1247)
Q Consensus 75 LlvlDd~~~ 83 (1247)
++|+|-...
T Consensus 157 ~ViIDT~G~ 165 (272)
T TIGR00064 157 VVLIDTAGR 165 (272)
T ss_pred EEEEeCCCC
Confidence 777888754
No 347
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=81.87 E-value=6.1 Score=45.38 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~ 67 (1247)
+|+|||+|+..++.....+. -+.+++.-+++. ....++++.+...=.... .......+ ...+-++
T Consensus 152 ~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 230 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEY 230 (461)
T ss_pred CCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999998765331 235677777654 556777777754322211 11111111 1223334
Q ss_pred Hh--cCCeEEEEEeCCCCc
Q 000869 68 LK--REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~--~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 231 frd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 231 FRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHhcCCeeEEEecchhHH
Confidence 43 379999999998543
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.83 E-value=5.2 Score=45.79 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=30.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLV 51 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~ 51 (1247)
.+|+||||.|.+++...... -..|..++..... ...+-++..++..+.+
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 37999999999999887643 2356667665433 2222334445555543
No 349
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.83 E-value=6.5 Score=45.01 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.|+||||+++.++.........+.+..+.... .....+-+..+++.++..................+. ..-++++|-
T Consensus 200 nG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~--~~d~VLIDT 277 (420)
T PRK14721 200 TGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR--GKHMVLIDT 277 (420)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--CCCEEEecC
Confidence 69999999999987653322234555554433 233444466667777766544333333333334342 334455565
Q ss_pred C
Q 000869 81 I 81 (1247)
Q Consensus 81 ~ 81 (1247)
.
T Consensus 278 a 278 (420)
T PRK14721 278 V 278 (420)
T ss_pred C
Confidence 4
No 350
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=81.83 E-value=18 Score=39.18 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=80.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC-HHHHHHHHHHHhCCCcc-----ccchHHHHHHHHHHHhc-----
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID-IKKIQQAIAEKLGLVLQ-----EETESSRASRLHEQLKR----- 70 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~~----- 70 (1247)
.|.|||.+......+.+ ..=+..+-+.+.+... -..+++.|++++..+.. ...-.+....+...+.+
T Consensus 58 rgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t 135 (408)
T KOG2228|consen 58 RGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETT 135 (408)
T ss_pred CCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCC
Confidence 59999999988887722 2123444455544332 33466677766643221 22334555666666654
Q ss_pred CCeEEEEEeCCCCccc------chhhccCC-CCCCCCcEEEEecCChhhhh-------hcCCcceEEcCCCCHHHHHHHH
Q 000869 71 EEKILIILDNIWKRVD------LETVGIPF-GDDHRGCKLLLTARDRTVLF-------SMGSEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~~~------~~~l~~~~-~~~~~~~~vliTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~ 136 (1247)
+.++.+|+|.+|-... +..+.... ....+-|-|-+|||-.-... ++....++-++.+.-++-.+++
T Consensus 136 ~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~ 215 (408)
T KOG2228|consen 136 SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLY 215 (408)
T ss_pred CceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHH
Confidence 3668999999876421 11221111 12446777889998764422 2233345556778888888888
Q ss_pred HHHh
Q 000869 137 KLMA 140 (1247)
Q Consensus 137 ~~~~ 140 (1247)
++..
T Consensus 216 r~ll 219 (408)
T KOG2228|consen 216 RKLL 219 (408)
T ss_pred HHHh
Confidence 8877
No 351
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=9.9 Score=38.72 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=61.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++|++..... |=+|+ . .++.+ +.||-. ...+..+++-.+.+.+.++.+|.+
T Consensus 198 pg~gktml~kava~~t~a~--firvv-----g----sefvq---kylgeg------prmvrdvfrlakenapsiifidei 257 (408)
T KOG0727|consen 198 PGTGKTMLAKAVANHTTAA--FIRVV-----G----SEFVQ---KYLGEG------PRMVRDVFRLAKENAPSIIFIDEI 257 (408)
T ss_pred CCCcHHHHHHHHhhccchh--eeeec-----c----HHHHH---HHhccC------cHHHHHHHHHHhccCCcEEEeehh
Confidence 7999999999999876543 43322 1 11111 122211 233445555555578888888998
Q ss_pred CCccc--c---------------hhhc--cCCCCCCCCcEEEEecCChhhhh----hcC-CcceEEcCCCCHHHHHHHHH
Q 000869 82 WKRVD--L---------------ETVG--IPFGDDHRGCKLLLTARDRTVLF----SMG-SEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 82 ~~~~~--~---------------~~l~--~~~~~~~~~~~vliTtR~~~~~~----~~~-~~~~~~l~~l~~~ea~~l~~ 137 (1247)
+.... + +-+. ..+ ....+.|||..|....... +.+ -...++.+--+..+-.-.|.
T Consensus 258 daiatkrfdaqtgadrevqril~ellnqmdgf-dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ 336 (408)
T KOG0727|consen 258 DAIATKRFDAQTGADREVQRILIELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 336 (408)
T ss_pred hhHhhhhccccccccHHHHHHHHHHHHhccCc-CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHH
Confidence 75410 1 1111 111 1345778898875544322 111 13455555344444444555
Q ss_pred HHh
Q 000869 138 LMA 140 (1247)
Q Consensus 138 ~~~ 140 (1247)
...
T Consensus 337 tit 339 (408)
T KOG0727|consen 337 TIT 339 (408)
T ss_pred hhh
Confidence 544
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=81.73 E-value=2 Score=42.79 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=15.4
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
+|+||||+|+++++...
T Consensus 9 pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 9 PGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999999854
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=81.53 E-value=3.2 Score=41.97 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
.+|+||||+|++++...
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999998764
No 354
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.44 E-value=5.1 Score=44.56 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=48.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcC-CccCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVS-QTIDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~~~ 67 (1247)
+|+|||||...+++... +|.++---++ ....+++++++.+..-+.... +.....+ +..+-++
T Consensus 172 sGVGKStLLgMiar~t~----aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 172 SGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CCCcHHHHHHHHhcccc----CCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999998644 6765544444 456778888777655544331 1111111 1233344
Q ss_pred Hh-cCCeEEEEEeCCC
Q 000869 68 LK-REEKILIILDNIW 82 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~ 82 (1247)
++ +|+++|+++|.+-
T Consensus 248 FRDqG~~VLL~mDSlT 263 (441)
T COG1157 248 FRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHhCCCeEEEEeecHH
Confidence 44 3899999999984
No 355
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=12 Score=44.40 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=83.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||.+++....- -+|++..+. ++ .+..|. ..+.++.++.+....++|.+.||.+
T Consensus 710 pGcGKT~la~a~a~~~~~-------~fisvKGPE----lL---~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 710 PGCGKTLLASAIASNSNL-------RFISVKGPE----LL---SKYIGA------SEQNVRDLFERAQSAKPCILFFDEF 769 (952)
T ss_pred CCCcHHHHHHHHHhhCCe-------eEEEecCHH----HH---HHHhcc------cHHHHHHHHHHhhccCCeEEEeccc
Confidence 799999999999976543 366666543 11 122232 3456677788777789999999999
Q ss_pred CCcc-------------cchhhccCCCC--CCCCcEEEE-ecCChhhhh---hcCC-cceEEcCCCCHHHHHHHHHHHhC
Q 000869 82 WKRV-------------DLETVGIPFGD--DHRGCKLLL-TARDRTVLF---SMGS-EKNFLVDILKEEEAWRLFKLMAG 141 (1247)
Q Consensus 82 ~~~~-------------~~~~l~~~~~~--~~~~~~vli-TtR~~~~~~---~~~~-~~~~~l~~l~~~ea~~l~~~~~~ 141 (1247)
+... .+.++...+.. +-.|.-|+- |||..-+-. +.+. ...+--+.-++.|-.+++...+.
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh
Confidence 7641 12222222111 234665665 455443321 2122 34555566777888888887773
Q ss_pred CCCCChhhHHHHHHHHHHcCCCchH
Q 000869 142 DDVENRELKSTATEVAKACKGLPIA 166 (1247)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~~~g~Pla 166 (1247)
.. ..+.....+.++.+.+|.--|
T Consensus 850 s~--~~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 850 SL--LKDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred cc--CCccccchHHHhhhcCCCchh
Confidence 11 111123356677778776533
No 356
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=81.16 E-value=5.4 Score=46.31 Aligned_cols=79 Identities=14% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCccHHHHHH-HHHHHhhhccCCCe-EEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHH
Q 000869 2 GGIGKTTLVK-EVARKARKDKLFDR-VVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~-~~~~~~~~~~~f~~-~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~ 65 (1247)
.|+|||+||. .++++.. -+. ++++-+++. ....++.+.+...=.+... ......+ ...+-
T Consensus 171 ~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiA 246 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIG 246 (497)
T ss_pred CCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3999999975 6666532 354 688888765 5567777777654322111 1111111 11222
Q ss_pred HHHh-cCCeEEEEEeCCCCc
Q 000869 66 EQLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 66 ~~l~-~~~~~LlvlDd~~~~ 84 (1247)
++++ .|+++|+|+||+-.-
T Consensus 247 Eyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 247 EHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHhCCCCEEEEEcChhHH
Confidence 2332 489999999998543
No 357
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.08 E-value=2.9 Score=44.76 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=16.8
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 000869 1 MGGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~ 19 (1247)
++|+||||+|+++++....
T Consensus 7 ~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5899999999999988764
No 358
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=81.07 E-value=1.3 Score=47.57 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=19.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSE 30 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~ 30 (1247)
++|+||||+|+++...+... =..+++++
T Consensus 9 ~P~SGKTt~a~~L~~~~~~~--~~~v~~i~ 36 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEEK--GKEVVIIS 36 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHHT--T--EEEE-
T ss_pred CCCCcHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 48999999999999988752 22355554
No 359
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=81.02 E-value=7.2 Score=44.98 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~ 67 (1247)
+|+|||||+..++.....+. =+.++++-+++. ....++++.+...=+... .+.....+ ...+-++
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEy 231 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEY 231 (463)
T ss_pred CCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988766432 245677777644 456677777764322211 11111111 1222333
Q ss_pred Hh--cCCeEEEEEeCCCC
Q 000869 68 LK--REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~--~~~~~LlvlDd~~~ 83 (1247)
++ .|+++||++|++-.
T Consensus 232 frd~~G~~VLll~DslTR 249 (463)
T PRK09280 232 FRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHhcCCceEEEecchHH
Confidence 32 38999999999854
No 360
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=81.02 E-value=6.5 Score=40.97 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=22.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI 35 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~ 35 (1247)
+|+||||+|+.++........=..+..++.....
T Consensus 8 sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 8 VAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 6999999999999887631101235556555443
No 361
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=81.01 E-value=6.5 Score=45.54 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCC--eEEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFD--RVVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESS------RASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~--~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~ 65 (1247)
.|+|||+|+..++++...++.+. .++++-+++. ....++++.+...=++... ...... ....+-
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 229 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 59999999999998765432222 5667777654 4566677766543222111 111111 112233
Q ss_pred HHHh--cCCeEEEEEeCCCC
Q 000869 66 EQLK--REEKILIILDNIWK 83 (1247)
Q Consensus 66 ~~l~--~~~~~LlvlDd~~~ 83 (1247)
++++ .|+++|+++||+-.
T Consensus 230 Eyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 230 EYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHccCCcEEEEEcChhH
Confidence 4444 48999999999854
No 362
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.91 E-value=7.2 Score=43.77 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcC-CccCHHHHHHHHHHHhCCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVS-QTIDIKKIQQAIAEKLGLVL 52 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~~ 52 (1247)
=|.||||-|.++++.++.+ .+ .+.-|.+. ...-.-+-++.++.+.+.+.
T Consensus 109 QGsGKTTt~~KLA~~lkk~-~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKK-GK-KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred cCCChHhHHHHHHHHHHHc-CC-ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 4999999999999999863 22 33333332 22334445566667766544
No 363
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=80.88 E-value=1.1 Score=41.99 Aligned_cols=17 Identities=47% Similarity=0.712 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
.+|+||||+|+++.+..
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999885
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=80.84 E-value=4.6 Score=38.51 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=29.5
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ 53 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 53 (1247)
.+|.||||+|+.+++..--. + .+.-.+.+++|+..|+...
T Consensus 8 ~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred CCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCCCHH
Confidence 37999999999999886532 1 2234578888988887653
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.79 E-value=2.9 Score=39.95 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=39.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|+|||++|+.+++... ..+.-+.+....+..++....-..-+........ +.+.+ .+..++|||++
T Consensus 8 ~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~------l~~a~--~~~~il~lDEi 74 (139)
T PF07728_consen 8 PGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP------LVRAM--RKGGILVLDEI 74 (139)
T ss_dssp SSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C------CCTTH--HEEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeeccccccccccc------ccccc--cceeEEEECCc
Confidence 79999999999999873 3455567777777776554332110000000000 00111 27899999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 75 n~a 77 (139)
T PF07728_consen 75 NRA 77 (139)
T ss_dssp GG-
T ss_pred ccC
Confidence 743
No 366
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=80.42 E-value=5.4 Score=46.32 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHHhhhccCC--CeEEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLF--DRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETES------SRASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f--~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~------~~~~~~~ 65 (1247)
.|+|||+|+..++++...++.- -.++++-+++. ....++++.+...=.+... ..... .....+-
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiA 231 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAA 231 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 5999999999999886532110 15677777654 5567777777654222111 11111 1113344
Q ss_pred HHHh--cCCeEEEEEeCCCC
Q 000869 66 EQLK--REEKILIILDNIWK 83 (1247)
Q Consensus 66 ~~l~--~~~~~LlvlDd~~~ 83 (1247)
++++ .|+++|+|+||+-.
T Consensus 232 Eyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 232 EYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHhcCCcEEEEEcChHH
Confidence 4444 48999999999854
No 367
>PTZ00185 ATPase alpha subunit; Provisional
Probab=80.26 E-value=7.7 Score=44.87 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=43.4
Q ss_pred CCccHHHHH-HHHHHHhhhc-----cCCCeEEEEEcCCccC-HHHHHHHHHHHhC-CCcc-------ccchHH------H
Q 000869 2 GGIGKTTLV-KEVARKARKD-----KLFDRVVFSEVSQTID-IKKIQQAIAEKLG-LVLQ-------EETESS------R 60 (1247)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~-----~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~-~~~~-------~~~~~~------~ 60 (1247)
.|+|||+|| ..++++.... +.-+.++++-+++... ...+.+.+ +.-+ +... .+.... .
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L-~e~GaL~~TvVV~AtAdep~~~r~~Apy~ 276 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLL-RSYGALRYTTVMAATAAEPAGLQYLAPYS 276 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHH-HhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence 589999997 5556665221 1235688888876644 44433333 3322 2111 111111 1
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 000869 61 ASRLHEQLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 61 ~~~~~~~l~-~~~~~LlvlDd~~~~ 84 (1247)
...+-++++ .++++|+|+||+-.-
T Consensus 277 a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 277 GVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchHH
Confidence 112222222 489999999998543
No 368
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=80.21 E-value=7.9 Score=42.61 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIA 45 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~ 45 (1247)
.|+|||+|+.+++++.. -+.++++-+++. ....++++++-
T Consensus 166 ~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 166 FGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 59999999999998643 357888888764 44566666653
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=80.16 E-value=9.9 Score=40.07 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|.|||++|.+++...... -+.++|++....
T Consensus 29 ~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 6999999999987654322 467899987543
No 370
>PRK08233 hypothetical protein; Provisional
Probab=80.14 E-value=4.4 Score=40.90 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
.+|+||||+|+.++....
T Consensus 11 ~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 379999999999998764
No 371
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.72 E-value=2.4 Score=46.48 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHH
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQA 43 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 43 (1247)
.|||||||+|.+.+-..... ...+.-|+.....++.+++..
T Consensus 10 KGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 39999999999988887755 355777777776666665554
No 372
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=79.68 E-value=4.9 Score=46.51 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAE 46 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~ 46 (1247)
+|+|||+|+..++...... +=+.+++.-+++. ....+++..+..
T Consensus 170 ~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 170 AGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred CCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHh
Confidence 6999999999998874321 1267888877754 456677776655
No 373
>PHA02244 ATPase-like protein
Probab=79.48 E-value=3.8 Score=45.46 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.1
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
+|+|||++|+++++...
T Consensus 128 pGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 128 AGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998753
No 374
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.47 E-value=1.5 Score=27.47 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=13.7
Q ss_pred CCCCcEEEccCCCCccCCcc
Q 000869 370 MKKLKVVDFCRMQFFSLPPS 389 (1247)
Q Consensus 370 l~~Lr~L~Ls~~~i~~lp~~ 389 (1247)
+++|++|+|++|.+..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 375
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.47 E-value=1.5 Score=27.47 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=13.7
Q ss_pred CCCCcEEEccCCCCccCCcc
Q 000869 370 MKKLKVVDFCRMQFFSLPPS 389 (1247)
Q Consensus 370 l~~Lr~L~Ls~~~i~~lp~~ 389 (1247)
+++|++|+|++|.+..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 376
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=79.40 E-value=7.8 Score=48.74 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=63.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc--CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR--EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~LlvlD 79 (1247)
+|+||||+|+.++...... | +-++++...+...+...-....|. .... +.+.+.. ...-++++|
T Consensus 358 pG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~~~~g~------~~G~---~~~~l~~~~~~~~villD 423 (784)
T PRK10787 358 PGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRRTYIGS------MPGK---LIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchhccCCC------CCcH---HHHHHHhcCCCCCEEEEE
Confidence 7999999999999875422 2 224445544443222111111111 1111 1222221 234578899
Q ss_pred CCCCccc------chhhccCCCC---------------CCCCcEEEEecCChhhhh-hcCCcceEEcCCCCHHHHHHHHH
Q 000869 80 NIWKRVD------LETVGIPFGD---------------DHRGCKLLLTARDRTVLF-SMGSEKNFLVDILKEEEAWRLFK 137 (1247)
Q Consensus 80 d~~~~~~------~~~l~~~~~~---------------~~~~~~vliTtR~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~ 137 (1247)
.++.... .+++...+.+ --...-+|.|+....+.. .......+++.+++.+|-.++..
T Consensus 424 Eidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~ 503 (784)
T PRK10787 424 EIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAK 503 (784)
T ss_pred ChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHH
Confidence 9976521 1223222211 012333444554443322 22445688899999998888877
Q ss_pred HHh
Q 000869 138 LMA 140 (1247)
Q Consensus 138 ~~~ 140 (1247)
.+.
T Consensus 504 ~~L 506 (784)
T PRK10787 504 RHL 506 (784)
T ss_pred Hhh
Confidence 766
No 377
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=79.25 E-value=1.8 Score=52.75 Aligned_cols=76 Identities=25% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|||||.||++++...-.++ +..+-++.|+...-+.+-+-| |.++-=.. -+....+-+..++..-.++.||.+
T Consensus 530 TGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHsVSrLI----GaPPGYVG-yeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 530 TGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHSVSRLI----GAPPGYVG-YEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred CcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHHHHHHh----CCCCCCce-eccccchhHhhhcCCCeEEEechh
Confidence 69999999999998764221 445556655544444333333 22221000 011223334444344567888999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 603 EKA 605 (786)
T COG0542 603 EKA 605 (786)
T ss_pred hhc
Confidence 876
No 378
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.25 E-value=2.2 Score=43.77 Aligned_cols=102 Identities=11% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|.||||++..++...... ..+.+++--........-...+..+-.. ......-...+...++ ..+=.+++|.+
T Consensus 10 tGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr-~~pd~ii~gEi 83 (198)
T cd01131 10 TGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALR-QDPDVILVGEM 83 (198)
T ss_pred CCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeeccc---CCCccCHHHHHHHHhc-CCcCEEEEcCC
Confidence 5999999999988776532 3334433222111000000011111000 0011112233444454 45668999999
Q ss_pred CCcccchhhccCCCCCCCCcEEEEecCChhh
Q 000869 82 WKRVDLETVGIPFGDDHRGCKLLLTARDRTV 112 (1247)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~ 112 (1247)
.+.+.++..... ...|..|+.|+-....
T Consensus 84 rd~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 84 RDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 877655443222 2245667777654443
No 379
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.90 E-value=1.1 Score=28.10 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.0
Q ss_pred CCCcCeEEEcccCCccc
Q 000869 1164 FPSLEYLFVVGCPKMNI 1180 (1247)
Q Consensus 1164 ~~sL~~L~i~~C~~l~~ 1180 (1247)
++.|++|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887754
No 380
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=78.50 E-value=4.3 Score=46.34 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=43.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
.|+|||||++.++.... .+.++..-+++. ....++.+.+...-++.. .+.....+. ..+-++
T Consensus 171 sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999986432 355666656544 445556666543322211 011111111 112222
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 000869 68 LK-REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 247 frd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHcCCCEEEEEcChHHH
Confidence 22 389999999998543
No 381
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=78.46 E-value=15 Score=40.30 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
+|+|||++|+.++....
T Consensus 73 pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 73 HGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCChHHHHHHHHHHHHC
Confidence 79999999999999875
No 382
>PTZ00088 adenylate kinase 1; Provisional
Probab=78.35 E-value=2.5 Score=44.13 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
++|+||||+|+.+++...
T Consensus 14 ~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 14 APGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 489999999999998753
No 383
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=17 Score=41.29 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||.||+++|-+.... +++++.. .|........ ...+..++...+.....++++|++
T Consensus 195 pgtGKtmL~~aiAsE~~at-------ff~iSas------------sLtsK~~Ge~-eK~vralf~vAr~~qPsvifidEi 254 (428)
T KOG0740|consen 195 PGTGKTMLAKAIATESGAT-------FFNISAS------------SLTSKYVGES-EKLVRALFKVARSLQPSVIFIDEI 254 (428)
T ss_pred CCCchHHHHHHHHhhhcce-------EeeccHH------------HhhhhccChH-HHHHHHHHHHHHhcCCeEEEechh
Confidence 6999999999999875533 2332211 1111111111 233444454444567888888888
Q ss_pred CC
Q 000869 82 WK 83 (1247)
Q Consensus 82 ~~ 83 (1247)
+.
T Consensus 255 ds 256 (428)
T KOG0740|consen 255 DS 256 (428)
T ss_pred HH
Confidence 64
No 384
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.22 E-value=7.4 Score=47.91 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.|+||||.+.+++...........|..++.... ....+-++..++.++.+.........+....+.+. ++ =++++|=
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~-D~VLIDT 271 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DK-HLVLIDT 271 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CC-CEEEEeC
Confidence 699999999999987743322345667765432 23445667777778766544333333444444443 33 4778888
Q ss_pred CC
Q 000869 81 IW 82 (1247)
Q Consensus 81 ~~ 82 (1247)
..
T Consensus 272 AG 273 (767)
T PRK14723 272 VG 273 (767)
T ss_pred CC
Confidence 76
No 385
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=78.06 E-value=7.7 Score=39.63 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=16.3
Q ss_pred CCccHHHHHHHHHHHhhhc
Q 000869 2 GGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (1247)
-|.|||.|++++.+....+
T Consensus 94 RGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 94 RGTGKSSLVKALLNEYADE 112 (287)
T ss_pred CCCChHHHHHHHHHHHHhc
Confidence 4999999999999988754
No 386
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.01 E-value=8.2 Score=45.04 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQ 53 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~ 53 (1247)
.|+||||.+.+++.....+..-..|..++.... ....+-++.+++.++....
T Consensus 265 nGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~ 317 (484)
T PRK06995 265 TGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH 317 (484)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee
Confidence 699999999999987754322235666665442 3344445555677665543
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.99 E-value=11 Score=42.34 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=49.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.||||||-.++++.+..-...=..|..|+.... ....+-++..++-++.+.........+......+. .. =++.+|=
T Consensus 212 TGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~~-d~ILVDT 289 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-DC-DVILVDT 289 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-cC-CEEEEeC
Confidence 599998766666555541111245777766543 44556677778888988877776666666666664 33 3333455
Q ss_pred CC
Q 000869 81 IW 82 (1247)
Q Consensus 81 ~~ 82 (1247)
+.
T Consensus 290 aG 291 (407)
T COG1419 290 AG 291 (407)
T ss_pred CC
Confidence 54
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=77.91 E-value=8.3 Score=40.49 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...-.. =..++|++....
T Consensus 25 ~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 6999999999998775422 367889988764
No 389
>PRK00889 adenylylsulfate kinase; Provisional
Probab=77.77 E-value=6.4 Score=39.39 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEc
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEV 31 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~ 31 (1247)
++|+||||+|++++...... -..+.+++.
T Consensus 12 ~~GsGKST~a~~la~~l~~~--g~~v~~id~ 40 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREA--GYPVEVLDG 40 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCeEEEEcC
Confidence 47999999999999987633 123556643
No 390
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=77.66 E-value=4.2 Score=42.83 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI 35 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~ 35 (1247)
+|+|||++|.+++.....+ .=+.++|++.....
T Consensus 28 ~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP 60 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H
T ss_pred CCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH
Confidence 7999999999988665322 02578999876544
No 391
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=77.62 E-value=2.9 Score=45.97 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQ 41 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 41 (1247)
||+||||+|.+.+-....+ =..+.-++.....++.+++
T Consensus 10 GGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARR--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCccHHHHh
Confidence 8999999999998877643 2457777766665555444
No 392
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.54 E-value=6 Score=41.57 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=62.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-----ccCHHHHHHHHHHHhCCCcc-------ccchHHHHHHHHHHHh
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-----TIDIKKIQQAIAEKLGLVLQ-------EETESSRASRLHEQLK 69 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~~~~l~ 69 (1247)
.|.||||+|+.+..=.... .+.+++.-.+ .....+-+.+++..+|.... +..-.+++.-...|..
T Consensus 48 SG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 6999999999998766543 4555554332 22234455666666665432 1222333333444444
Q ss_pred cCCeEEEEEeCCCCccc------chhhccCCCCCCCCcEEEEecCChhhhhhcCC
Q 000869 70 REEKILIILDNIWKRVD------LETVGIPFGDDHRGCKLLLTARDRTVLFSMGS 118 (1247)
Q Consensus 70 ~~~~~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~ 118 (1247)
.-++-++|.|..-..-+ .-.+..-+. ...|-..+..|-+-.+...+..
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 47899999998654311 111111111 1235557777777777665433
No 393
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=77.46 E-value=5.8 Score=38.47 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 000869 1 MGGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~ 20 (1247)
++|.||||+|.++.+.+...
T Consensus 31 LSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 57999999999999988754
No 394
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=77.41 E-value=6.1 Score=42.10 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCccHHHHHHHHHHHhhh-ccC-------CCeEEEEEcCC-ccCHHHHHHHHHHHhCCCc
Q 000869 2 GGIGKTTLVKEVARKARK-DKL-------FDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVL 52 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~-~~~-------f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~ 52 (1247)
||+||||++...+=-... ++. ...|++|++.. ..++..-++.+..++++..
T Consensus 98 sg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 98 SGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred CcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 899999999887644322 222 34688998764 4556666777777777654
No 395
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=77.37 E-value=8.6 Score=44.16 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=42.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
.|+|||||++.+++... .+.+++.-+++. ....++.+.....-+... .+.....+. ..+-++
T Consensus 167 sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 167 SGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999987654 345555555543 445555544433222211 011111111 122223
Q ss_pred Hh-cCCeEEEEEeCCCC
Q 000869 68 LK-REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~ 83 (1247)
++ .|+++|+++||+-.
T Consensus 243 frd~G~~Vll~~DslTr 259 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHCCCcEEEEEeCcHH
Confidence 32 38999999999854
No 396
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=77.06 E-value=6.8 Score=41.73 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=42.2
Q ss_pred CCccHHHHH-HHHHHHhhhccCCCeE-EEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHH
Q 000869 2 GGIGKTTLV-KEVARKARKDKLFDRV-VFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLH 65 (1247)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~f~~~-~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~ 65 (1247)
+|+|||+|| ..++++.. -+.+ +++-+++. ....++.+.+...=.... .++....+ ...+-
T Consensus 78 ~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiA 153 (274)
T cd01132 78 RQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMG 153 (274)
T ss_pred CCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 479999996 44554422 3454 66666654 456667776654322111 11111111 11222
Q ss_pred HHHh-cCCeEEEEEeCCCCc
Q 000869 66 EQLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 66 ~~l~-~~~~~LlvlDd~~~~ 84 (1247)
++++ .++++|+|+||+-.-
T Consensus 154 E~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 154 EYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHCCCCEEEEEcChHHH
Confidence 2222 379999999998643
No 397
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=76.64 E-value=8.9 Score=44.38 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeE-EEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRV-VFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~-~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~ 66 (1247)
.|+|||+||....-... .-+.+ +++-+++. .+..++.+.+...=.+.. .......+. ..+-+
T Consensus 150 ~g~GKt~Lal~~I~~q~---~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAE 226 (485)
T CHL00059 150 RQTGKTAVATDTILNQK---GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE 226 (485)
T ss_pred CCCCHHHHHHHHHHhcc---cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHH
Confidence 59999999765443222 13544 77777754 556667776654322211 011111111 11222
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 000869 67 QLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 67 ~l~-~~~~~LlvlDd~~~~ 84 (1247)
+++ .|+++|+|+||+-.-
T Consensus 227 yfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 227 YFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHcCCCEEEEEcChhHH
Confidence 222 389999999998654
No 398
>PRK13768 GTPase; Provisional
Probab=76.51 E-value=9.2 Score=40.90 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVS 32 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~ 32 (1247)
.||+||||++..++...... -..++.++..
T Consensus 10 ~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~D 39 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEEQ--GYDVAIVNLD 39 (253)
T ss_pred CCCccHHHHHHHHHHHHHhc--CCceEEEECC
Confidence 38999999999999888643 3456666654
No 399
>PRK12678 transcription termination factor Rho; Provisional
Probab=76.48 E-value=7.1 Score=45.75 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeE-EEEEcCC-ccCHHHHHHHHHHHhCCCccccc------hHHHHHHHHHHHh-cCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRV-VFSEVSQ-TIDIKKIQQAIAEKLGLVLQEET------ESSRASRLHEQLK-REE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~-~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~~~l~-~~~ 72 (1247)
+|+|||||++.+++.... ++-+.. +++-+++ +..+.++.+.+--.+-....... .......+-.++. .++
T Consensus 425 p~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~ 503 (672)
T PRK12678 425 PKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGK 503 (672)
T ss_pred CCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999987753 223433 3334443 33344444433111110111111 1112222333332 489
Q ss_pred eEEEEEeCCCCc
Q 000869 73 KILIILDNIWKR 84 (1247)
Q Consensus 73 ~~LlvlDd~~~~ 84 (1247)
.+||++|++-..
T Consensus 504 dVlillDSlTR~ 515 (672)
T PRK12678 504 DVVVLLDSITRL 515 (672)
T ss_pred CEEEEEeCchHH
Confidence 999999998543
No 400
>PRK03839 putative kinase; Provisional
Probab=76.42 E-value=1.8 Score=43.74 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=16.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
++|+||||+|+++++...
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998864
No 401
>PRK00625 shikimate kinase; Provisional
Probab=76.13 E-value=1.9 Score=42.90 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
|+|+||||+|+.+++...
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998764
No 402
>PRK06217 hypothetical protein; Validated
Probab=75.94 E-value=8.1 Score=38.99 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
.+|.||||+|++++....
T Consensus 9 ~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 9 ASGSGTTTLGAALAERLD 26 (183)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998864
No 403
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.83 E-value=5.7 Score=39.60 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFS 29 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~ 29 (1247)
.|.|||||++.++.-... ..+.+++
T Consensus 37 nGsGKstLl~~i~G~~~~---~~G~i~~ 61 (171)
T cd03228 37 SGSGKSTLLKLLLRLYDP---TSGEILI 61 (171)
T ss_pred CCCCHHHHHHHHHcCCCC---CCCEEEE
Confidence 599999999999876542 3444444
No 404
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=75.51 E-value=3.8 Score=36.71 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=16.4
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
||+||||+|..++.....
T Consensus 9 gG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 9 GGVGKTTTAVNLAAALAR 26 (104)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 899999999999988874
No 405
>PRK08149 ATP synthase SpaL; Validated
Probab=75.36 E-value=8.3 Score=44.18 Aligned_cols=79 Identities=13% Similarity=0.277 Sum_probs=43.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcC-CccCHHHHHHHHHHHhCCCc-------cccchHH------HHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVS-QTIDIKKIQQAIAEKLGLVL-------QEETESS------RASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (1247)
.|+|||||+..++.... .+.+++..++ ...+..++............ .+..... ....+-++
T Consensus 160 sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred CCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 69999999999986543 3444444443 33445566666655432211 1111111 11222223
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 000869 68 LK-REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~~ 84 (1247)
++ .++++||++||+-.-
T Consensus 236 fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 236 FRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHcCCCEEEEccchHHH
Confidence 32 389999999998543
No 406
>COG3910 Predicted ATPase [General function prediction only]
Probab=75.26 E-value=14 Score=36.37 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCc----ccchhhccCCCCCCCCcEEEEecCChhhhhhcCCcceEEcCC-------CCHHHHHHHHHHH
Q 000869 71 EEKILIILDNIWKR----VDLETVGIPFGDDHRGCKLLLTARDRTVLFSMGSEKNFLVDI-------LKEEEAWRLFKLM 139 (1247)
Q Consensus 71 ~~~~LlvlDd~~~~----~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~~~~~~~l~~-------l~~~ea~~l~~~~ 139 (1247)
.+.=+.|+|.-+.. .|++-+...-.-...|++|||.|-.+-+.. +..+..++.+. +.+.|+.++++.-
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~~~g~~~~~fe~te~~r~lR~F 223 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEISESGIEERDFEETEHFRALRDF 223 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEecCCccccchHHHHHHHHHHHH
Confidence 45667888987654 222221111111235789999998886544 35556666542 3445666666555
Q ss_pred h
Q 000869 140 A 140 (1247)
Q Consensus 140 ~ 140 (1247)
.
T Consensus 224 l 224 (233)
T COG3910 224 L 224 (233)
T ss_pred H
Confidence 4
No 407
>PRK09099 type III secretion system ATPase; Provisional
Probab=75.05 E-value=7.1 Score=44.96 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLHEQL 68 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~~~l 68 (1247)
.|+|||||++.++.....+ .++++..-.......++.+.+...-++... ......+ ...+-+++
T Consensus 172 sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyf 248 (441)
T PRK09099 172 AGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYF 248 (441)
T ss_pred CCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999998765422 234444444455566666666544322111 1111111 12222333
Q ss_pred h-cCCeEEEEEeCCCCc
Q 000869 69 K-REEKILIILDNIWKR 84 (1247)
Q Consensus 69 ~-~~~~~LlvlDd~~~~ 84 (1247)
+ .|+++|+++||+-.-
T Consensus 249 rd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 249 RDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHcCCCEEEeccchhHH
Confidence 2 389999999998543
No 408
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=74.80 E-value=9.4 Score=45.41 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCccHHHHHHHHHHHhhhccCC-CeEEEEEcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLF-DRVVFSEVSQ 33 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f-~~~~w~~~~~ 33 (1247)
+|+|||++|.+++..-..+ + +.++||++.+
T Consensus 30 pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE 60 (484)
T TIGR02655 30 SGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE 60 (484)
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec
Confidence 7999999999998764322 3 6789998863
No 409
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=74.75 E-value=1.9 Score=43.11 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
|=|+||||||++.++...
T Consensus 12 ~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 12 MIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccccCHHHHHHHHHHHhC
Confidence 459999999999998876
No 410
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=74.74 E-value=7.5 Score=40.65 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
||+|||++|..++...... -..+.-++...
T Consensus 12 GGvGKSt~a~~la~~l~~~--g~~vl~iD~D~ 41 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASK--GQKPLCIDTDP 41 (241)
T ss_pred CCCcHHHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 8999999999999887643 23456666553
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.73 E-value=16 Score=39.24 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc-CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR-EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlD 79 (1247)
+|+||||+++.++.....+ =..+.+++..... ....-++..+..++.+.........+......+.+ ++.-++|+|
T Consensus 84 ~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViID 161 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 161 (270)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6999999999998876532 2356667665432 22222334445555444332233333444444432 356788889
Q ss_pred CCCCc
Q 000869 80 NIWKR 84 (1247)
Q Consensus 80 d~~~~ 84 (1247)
.....
T Consensus 162 t~Gr~ 166 (270)
T PRK06731 162 TAGKN 166 (270)
T ss_pred CCCCC
Confidence 88554
No 412
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=74.61 E-value=8.2 Score=36.24 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.9
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
+|.||||++.++++....
T Consensus 4 sG~GKStvg~~lA~~lg~ 21 (161)
T COG3265 4 SGSGKSTVGSALAERLGA 21 (161)
T ss_pred CccCHHHHHHHHHHHcCC
Confidence 699999999999998753
No 413
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=74.57 E-value=3.8 Score=44.59 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIK 38 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~ 38 (1247)
||+||||+|..++...... =..|.-|++..+.+..
T Consensus 10 GGvGKTT~~~nLA~~La~~--G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEM--GKKVMIVGCDPKADST 44 (270)
T ss_pred CcCCHHHHHHHHHHHHHhC--CCeEEEEEcCCCCCch
Confidence 8999999999999988743 2368888887765544
No 414
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=74.54 E-value=8.1 Score=44.40 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=40.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHh-----CCCcccc-chHHHH------HHHHHHHh
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKL-----GLVLQEE-TESSRA------SRLHEQLK 69 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l-----~~~~~~~-~~~~~~------~~~~~~l~ 69 (1247)
.|+|||||++.++..... ..+++++.-....++.++........ +.-.+.+ ....+. ..+-++++
T Consensus 174 SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 174 SGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699999999888754332 23455554334445555444333222 1111111 111111 11222222
Q ss_pred -cCCeEEEEEeCCCC
Q 000869 70 -REEKILIILDNIWK 83 (1247)
Q Consensus 70 -~~~~~LlvlDd~~~ 83 (1247)
.++++|+++||+-.
T Consensus 251 d~G~~Vll~~DslTr 265 (450)
T PRK06002 251 DRGENVLLIVDSVTR 265 (450)
T ss_pred HcCCCEEEeccchHH
Confidence 38999999999854
No 415
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=74.50 E-value=6.2 Score=41.19 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++|+++.... |=+++ -.++ |-+.+|. -...+.++++......+.++.+|.+
T Consensus 228 PGTGKTLLAKAVANqTSAT--FlRvv---------GseL---iQkylGd------GpklvRqlF~vA~e~apSIvFiDEI 287 (440)
T KOG0726|consen 228 PGTGKTLLAKAVANQTSAT--FLRVV---------GSEL---IQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEI 287 (440)
T ss_pred CCCchhHHHHHHhcccchh--hhhhh---------hHHH---HHHHhcc------chHHHHHHHHHHHhcCCceEEeehh
Confidence 7999999999999987755 53322 0111 1223332 2344556666665567778888888
Q ss_pred CC
Q 000869 82 WK 83 (1247)
Q Consensus 82 ~~ 83 (1247)
+.
T Consensus 288 dA 289 (440)
T KOG0726|consen 288 DA 289 (440)
T ss_pred hh
Confidence 64
No 416
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=74.26 E-value=2.4 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=14.8
Q ss_pred CCccHHHHHHHHHHHh
Q 000869 2 GGIGKTTLVKEVARKA 17 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (1247)
.|+||||+|+++.+..
T Consensus 8 ~gsGKst~~~~l~~~l 23 (69)
T cd02019 8 SGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999886
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=74.15 E-value=18 Score=34.92 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
.+|+||||+|+.++....
T Consensus 7 ~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 7 LSGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 379999999999998875
No 418
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.06 E-value=4.6 Score=45.98 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
+|.|||-||++++-+..+- +|...+..++-- . ..--..++..+++..+..-+|+|.+|.+
T Consensus 346 PGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm------~--------VGvGArRVRdLF~aAk~~APcIIFIDEi 405 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEAGVP------FFYASGSEFDEM------F--------VGVGARRVRDLFAAAKARAPCIIFIDEI 405 (752)
T ss_pred CCCchhHHHHHhhcccCCC------eEeccccchhhh------h--------hcccHHHHHHHHHHHHhcCCeEEEEech
Confidence 7999999999999765432 233333333211 1 1113466777888887789999999999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
|..
T Consensus 406 Dav 408 (752)
T KOG0734|consen 406 DAV 408 (752)
T ss_pred hhh
Confidence 764
No 419
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=73.83 E-value=12 Score=36.87 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHhcCCeEEEEEeC----CCCcccchhhccCCCCCCCCcEEEEecCChhhhhhcC
Q 000869 65 HEQLKREEKILIILDN----IWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSMG 117 (1247)
Q Consensus 65 ~~~l~~~~~~LlvlDd----~~~~~~~~~l~~~~~~~~~~~~vliTtR~~~~~~~~~ 117 (1247)
.+++- +++-+|+-|. +|..-.|+-+...-.-...|..||++|-+..+...+.
T Consensus 149 ARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 149 ARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 33343 6778888875 3333333322111111335889999999999877643
No 420
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=73.71 E-value=4 Score=43.07 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEc
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEV 31 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~ 31 (1247)
++|+||||+++.+.+.....+ ..++-|++
T Consensus 4 paGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 689999999999999987542 33444443
No 421
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=73.69 E-value=15 Score=37.52 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=40.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCC---eEEEEEcCCccCHHHHHHHHHH---HhCCCccccchHHHHHHHHHHHhcCCeEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFD---RVVFSEVSQTIDIKKIQQAIAE---KLGLVLQEETESSRASRLHEQLKREEKIL 75 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~---~~~w~~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 75 (1247)
+|+||||+|++++..+.... .. .+..+..............-.. ......+..-..+...+....+.+++.+-
T Consensus 8 sgSGKTTla~~L~~~L~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~i~ 86 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQILNKRG-IPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALKNGGSIE 86 (194)
T ss_dssp TTSSHHHHHHHHHHHHTTCT-TTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSCEE
T ss_pred CCCCHHHHHHHHHHHhCccC-cCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHhCCCccc
Confidence 79999999999999987432 22 2445554443332222222111 11112223334445556666777666655
Q ss_pred EEE
Q 000869 76 IIL 78 (1247)
Q Consensus 76 lvl 78 (1247)
+-.
T Consensus 87 ~p~ 89 (194)
T PF00485_consen 87 IPI 89 (194)
T ss_dssp EEE
T ss_pred ccc
Confidence 533
No 422
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=73.64 E-value=13 Score=35.97 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
.+|+||||+|+.++...
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999999998763
No 423
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=73.35 E-value=7.9 Score=38.85 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
.|.|||||++.++-...
T Consensus 37 nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 37 SGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCCHHHHHHHHhccCC
Confidence 69999999999987654
No 424
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.32 E-value=46 Score=35.08 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCccHHHHHHHHHHHhhhc----cCCCeEEEEEcCC---------------------ccCHHHHHHHHHHHhCCCccccc
Q 000869 2 GGIGKTTLVKEVARKARKD----KLFDRVVFSEVSQ---------------------TIDIKKIQQAIAEKLGLVLQEET 56 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~f~~~~w~~~~~---------------------~~~~~~~~~~i~~~l~~~~~~~~ 56 (1247)
.|.||-|.+..+.++.-.- -+.+..-|.+-+. ....+.+.++++++++-..+.+.
T Consensus 43 SGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~ 122 (351)
T KOG2035|consen 43 SGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET 122 (351)
T ss_pred CCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh
Confidence 6999999999998887421 1122223332211 12233455666655543222111
Q ss_pred hHHHHHHHHHHHhcCCeE-EEEEeCCCCc--ccchhhccCCCCCCCCcEEEEecCC--hhhhhhcCCcceEEcCCCCHHH
Q 000869 57 ESSRASRLHEQLKREEKI-LIILDNIWKR--VDLETVGIPFGDDHRGCKLLLTARD--RTVLFSMGSEKNFLVDILKEEE 131 (1247)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~-LlvlDd~~~~--~~~~~l~~~~~~~~~~~~vliTtR~--~~~~~~~~~~~~~~l~~l~~~e 131 (1247)
.. .+.+ ++|+..+++. +..+++......-...+|+|+..-. +-+...-...-.++++..+++|
T Consensus 123 ~~------------qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~ee 190 (351)
T KOG2035|consen 123 QG------------QRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEE 190 (351)
T ss_pred cc------------ccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHH
Confidence 11 1222 4455555543 3334444333334457777764322 2222222445688899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHhcC----------ChhHHHHHHHHhcC
Q 000869 132 AWRLFKLMAGDDVENRELKSTATEVAKACKGLP-IALTTIARALRNK----------SMPQWKTTLQQLRM 191 (1247)
Q Consensus 132 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~a~~l~~~----------~~~~w~~~l~~l~~ 191 (1247)
....+...+..+.-.-. .+.+.+|+++++|.- .||-++-+.--.+ ..-+|+-++.+...
T Consensus 191 I~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 191 ITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 99999999843222222 578999999999864 4444332221111 35578887776543
No 425
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=73.28 E-value=12 Score=44.10 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=43.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCe-EEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHHH------HHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDR-VVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSRA------SRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~-~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~~------~~~~~ 66 (1247)
+|+|||+||....-... .-+. ++++-+++. ....++.+.+...=.+... ......+. ..+-+
T Consensus 171 ~g~GKt~lal~~i~~~~---~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAE 247 (502)
T PRK09281 171 RQTGKTAIAIDTIINQK---GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGE 247 (502)
T ss_pred CCCCchHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 59999999654433222 2355 378877765 4456666666543222111 11111111 11222
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 000869 67 QLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 67 ~l~-~~~~~LlvlDd~~~~ 84 (1247)
+++ .|+++|+|+||+-.-
T Consensus 248 yfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 248 YFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHcCCCEEEEecCchHH
Confidence 222 379999999998654
No 426
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=73.19 E-value=12 Score=44.09 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCccHHHHH-HHHHHHhhhccCCCe-EEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHH
Q 000869 2 GGIGKTTLV-KEVARKARKDKLFDR-VVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLH 65 (1247)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~f~~-~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~ 65 (1247)
.|+|||+|| ..++++. .-+. ++++-+++. ....++.+.+...=.+... ......+ ...+-
T Consensus 170 ~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiA 245 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMA 245 (501)
T ss_pred CCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 499999997 4455542 2456 488888764 4566777776644222111 1111111 12222
Q ss_pred HHHh-cCCeEEEEEeCCCCc
Q 000869 66 EQLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 66 ~~l~-~~~~~LlvlDd~~~~ 84 (1247)
++++ .|+++|+|+||+-.-
T Consensus 246 Eyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 246 EYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHcCCCEEEEecchHHH
Confidence 2222 379999999998654
No 427
>PRK06936 type III secretion system ATPase; Provisional
Probab=73.16 E-value=9.9 Score=43.63 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
.|+|||||.+.+++... .+.+++.-+++. ....++.+.....-++.. .+.....+. ..+-++
T Consensus 171 sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 171 AGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred CCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988654 356777777654 445555544332212111 011111111 112222
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 000869 68 LK-REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 247 frd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 247 FRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 22 389999999998543
No 428
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=73.14 E-value=7.3 Score=44.64 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=41.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCc-------cccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVL-------QEETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~------~~~~~~ 67 (1247)
.|+|||||+..++.... .+.++...++. .....++.+.....=++.. .......+. ..+-++
T Consensus 146 sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEy 221 (411)
T TIGR03496 146 SGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221 (411)
T ss_pred CCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999998886543 34444444444 3445555555543321111 111111111 222222
Q ss_pred Hh-cCCeEEEEEeCCCC
Q 000869 68 LK-REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~ 83 (1247)
++ .++++|+++||+-.
T Consensus 222 fr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 222 FRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHCCCCEEEEEeChHH
Confidence 32 38999999999854
No 429
>PRK10037 cell division protein; Provisional
Probab=73.08 E-value=4.2 Score=43.61 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
||+||||+|..++...... =..|.-|+....
T Consensus 11 GGvGKTT~a~nLA~~La~~--G~rVLlID~D~q 41 (250)
T PRK10037 11 GGVGTTSITAALAWSLQML--GENVLVIDACPD 41 (250)
T ss_pred CCccHHHHHHHHHHHHHhc--CCcEEEEeCChh
Confidence 8999999999999988754 236777887664
No 430
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=73.07 E-value=10 Score=37.32 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=14.6
Q ss_pred CCccHHHHHHHHHHHh
Q 000869 2 GGIGKTTLVKEVARKA 17 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (1247)
+|+|||||++++..+.
T Consensus 13 SG~GKsTl~k~L~~~~ 28 (191)
T COG0194 13 SGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999999999875
No 431
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=73.06 E-value=17 Score=38.72 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=28.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIA 45 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 45 (1247)
+|+|||++|.+++....... =..++|++... +...+.+.+.
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHH
Confidence 79999999999988765431 24688888765 3344455443
No 432
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=72.97 E-value=13 Score=36.72 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
.+|+||||+|+.+++..
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 37999999999999774
No 433
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=72.88 E-value=11 Score=45.45 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...... -..++|++....
T Consensus 282 ~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~ 312 (509)
T PRK09302 282 TGTGKTLLASKFAEAACRR--GERCLLFAFEES 312 (509)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 6999999999999876433 478999987654
No 434
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=72.84 E-value=12 Score=39.50 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.7
Q ss_pred CCccHHHHHHHHHHHhhhc
Q 000869 2 GGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (1247)
+|+|||||++.++......
T Consensus 42 ~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 42 PGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCHHHHHHHHHHHhhhc
Confidence 6999999999999888754
No 435
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=72.81 E-value=4 Score=42.62 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
||+||||++...+.-.... =..|+=|+++.
T Consensus 11 GGvG~TTltAnLA~aL~~~--G~~VlaID~dp 40 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL--GESVLAIDLDP 40 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEeCCc
Confidence 8999999999999988754 35688888754
No 436
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=72.78 E-value=12 Score=36.91 Aligned_cols=106 Identities=10% Similarity=0.124 Sum_probs=49.0
Q ss_pred CCccHHHHHHHHHHHhhhcc---CCC---eEEEEEcCCccCHHHHHHHHHHHhCCCccccch-HHHHHHHHHHHhcCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDK---LFD---RVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETE-SSRASRLHEQLKREEKI 74 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---~f~---~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~ 74 (1247)
.|.|||||++.++....... .++ .+.++.-........+.+.+... ....... ..+...+.+.+. .++-
T Consensus 36 nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~-~~p~ 111 (166)
T cd03223 36 SGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFARLLL-HKPK 111 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHH-cCCC
Confidence 59999999999987654321 011 12222211111111233333211 1111222 222233444454 6778
Q ss_pred EEEEeCCCCccc---chhhccCCCCCCCCcEEEEecCChhhh
Q 000869 75 LIILDNIWKRVD---LETVGIPFGDDHRGCKLLLTARDRTVL 113 (1247)
Q Consensus 75 LlvlDd~~~~~~---~~~l~~~~~~~~~~~~vliTtR~~~~~ 113 (1247)
++++|.--..-+ .+.+...+... +..||++|.+....
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 889998654311 12221111111 34588888777654
No 437
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=72.70 E-value=6.6 Score=38.93 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHh---CCCccccchHHHHHHHHHHHhcCCeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKL---GLVLQEETESSRASRLHEQLKREEKILIIL 78 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~~~l~~~~~~Llvl 78 (1247)
+|.|||++|..++.+.. ..++|+......+. +..+.+.... +......+....+..+..... .+.-++++
T Consensus 10 ~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~-~~~~~VlI 82 (170)
T PRK05800 10 ARSGKSRFAERLAAQSG-----LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA-APGRCVLV 82 (170)
T ss_pred CCccHHHHHHHHHHHcC-----CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc-CCCCEEEe
Confidence 68999999999987642 23566665554433 3444543332 222222222222333333322 22336888
Q ss_pred eCC
Q 000869 79 DNI 81 (1247)
Q Consensus 79 Dd~ 81 (1247)
|.+
T Consensus 83 D~L 85 (170)
T PRK05800 83 DCL 85 (170)
T ss_pred hhH
Confidence 886
No 438
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=72.66 E-value=9.8 Score=44.44 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=43.3
Q ss_pred CCccHHHHH-HHHHHHhhhccCCCeE-EEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHH
Q 000869 2 GGIGKTTLV-KEVARKARKDKLFDRV-VFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLH 65 (1247)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~f~~~-~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~ 65 (1247)
+|+|||+|| ..++++ . .-+.+ +++-+++. .+..++.+.+...=.+... ......+ ...+-
T Consensus 171 ~g~GKt~Lal~~i~~~-~---~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiA 246 (502)
T PRK13343 171 RQTGKTAIAIDAIINQ-K---DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIA 246 (502)
T ss_pred CCCCccHHHHHHHHhh-c---CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHH
Confidence 599999996 445543 2 23553 77777765 4466666666543222110 1111111 11222
Q ss_pred HHHh-cCCeEEEEEeCCCCc
Q 000869 66 EQLK-REEKILIILDNIWKR 84 (1247)
Q Consensus 66 ~~l~-~~~~~LlvlDd~~~~ 84 (1247)
++++ .|+++|+|+||+-.-
T Consensus 247 Eyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 247 EYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHhCCCCEEEEecchHHH
Confidence 2332 489999999998654
No 439
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=72.54 E-value=3.8 Score=40.44 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchH-HHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETES-SRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.|.|||||.+.++-.... ..+-++++-....... ......+.++...+ .... .+...+.+.+. ..+-++++|+
T Consensus 35 nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~-~~~~~~~~i~~~~q-LS~G~~qrl~laral~-~~p~illlDE 108 (163)
T cd03216 35 NGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFAS-PRDARRAGIAMVYQ-LSVGERQMVEIARALA-RNARLLILDE 108 (163)
T ss_pred CCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCC-HHHHHhcCeEEEEe-cCHHHHHHHHHHHHHh-cCCCEEEEEC
Confidence 699999999999865432 3555665432211110 00111111222111 2222 22233444444 5778888999
Q ss_pred CCCccc---chhhccCCCCC-CCCcEEEEecCChhhhh
Q 000869 81 IWKRVD---LETVGIPFGDD-HRGCKLLLTARDRTVLF 114 (1247)
Q Consensus 81 ~~~~~~---~~~l~~~~~~~-~~~~~vliTtR~~~~~~ 114 (1247)
.-..-+ .+.+...+... ..+..||++|.+.....
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 754322 11121111111 23556888888876443
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=72.52 E-value=4.8 Score=38.67 Aligned_cols=94 Identities=24% Similarity=0.276 Sum_probs=46.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
.|.|||||++.++..... ..+.+|++-.. .++.-.+-..-..+...+.+.+. ..+-++++|+.
T Consensus 35 nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~-~~p~illlDEP 97 (144)
T cd03221 35 NGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLL-ENPNLLLLDEP 97 (144)
T ss_pred CCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 599999999999876542 24555553210 00000000011112223344444 56778889987
Q ss_pred CCccc---chhhccCCCCCCCCcEEEEecCChhhhh
Q 000869 82 WKRVD---LETVGIPFGDDHRGCKLLLTARDRTVLF 114 (1247)
Q Consensus 82 ~~~~~---~~~l~~~~~~~~~~~~vliTtR~~~~~~ 114 (1247)
-..-+ .+.+...+... +..||++|.+.....
T Consensus 98 ~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 98 TNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred ccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 54311 22222222221 235888887776554
No 441
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=72.52 E-value=7.7 Score=44.45 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLHEQL 68 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~~~l 68 (1247)
.|+|||||++.++..... ..+++...-.......++.+.....-++... ......+ ...+-+++
T Consensus 149 sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 149 SGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred CCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 699999999888865432 2233333333345566566554433222111 1111111 12222333
Q ss_pred h-cCCeEEEEEeCCCC
Q 000869 69 K-REEKILIILDNIWK 83 (1247)
Q Consensus 69 ~-~~~~~LlvlDd~~~ 83 (1247)
+ .++++|+++||+-.
T Consensus 226 rd~G~~Vll~~DslTr 241 (418)
T TIGR03498 226 RDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHcCCCEEEeccchhH
Confidence 2 38999999999854
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=72.41 E-value=7.7 Score=44.51 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLHEQL 68 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~~~l 68 (1247)
.|+|||||+..++...... .+++.+.-....+..+++++.+..-+.... +.....+ ...+-+++
T Consensus 165 sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 165 SGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred CCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999998765422 234443333446666676655544332210 1111111 12222222
Q ss_pred h-cCCeEEEEEeCCCCc
Q 000869 69 K-REEKILIILDNIWKR 84 (1247)
Q Consensus 69 ~-~~~~~LlvlDd~~~~ 84 (1247)
+ .++++|+|+|+.-.-
T Consensus 242 r~~G~~VLlilDslTr~ 258 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHcCCcEEEEecchHHH
Confidence 2 379999999998654
No 443
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=72.38 E-value=4.3 Score=40.83 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
-||+||||+|..++.....+ -..|+-++...
T Consensus 8 kgG~GKtt~a~~la~~l~~~--g~~vllvD~D~ 38 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQL--GYKVVLIDADL 38 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence 38999999999999988743 34677777654
No 444
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=72.12 E-value=2.8 Score=37.85 Aligned_cols=19 Identities=53% Similarity=0.725 Sum_probs=16.4
Q ss_pred CCccHHHHHHHHHHHhhhc
Q 000869 2 GGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (1247)
+|+|||++|..++.+....
T Consensus 7 ~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 7 PGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 7999999999999887643
No 445
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=71.93 E-value=2.7 Score=38.70 Aligned_cols=17 Identities=47% Similarity=0.630 Sum_probs=14.7
Q ss_pred CccHHHHHHHHHHHhhh
Q 000869 3 GIGKTTLVKEVARKARK 19 (1247)
Q Consensus 3 GiGKTtla~~~~~~~~~ 19 (1247)
|+||||+++.+++....
T Consensus 25 GaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGI 41 (123)
T ss_dssp TSSHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999988743
No 446
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=71.79 E-value=4.7 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=26.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIK 38 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~ 38 (1247)
||+||||+|..++...... =..|.-|+.....+..
T Consensus 11 GGVGKTT~~~nLA~~la~~--G~kVLliD~Dpq~~~t 45 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKL--GKKVLQIGCDPKHDST 45 (270)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeccCCcchh
Confidence 8999999999999988743 2357777776554443
No 447
>PRK14532 adenylate kinase; Provisional
Probab=71.49 E-value=12 Score=38.09 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
++|+||||+|+.++...
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999998753
No 448
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=71.46 E-value=9 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIA 45 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 45 (1247)
+|+|||++|..++.+..... -..|+|++..... .++...+.
T Consensus 28 pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~--~~l~~R~l 68 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAALNG-GYPVLYFSLEMSE--EELAARLL 68 (259)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-H--HHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCH--HHHHHHHH
Confidence 79999999999999887542 2688898876433 33444443
No 449
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=71.42 E-value=4.7 Score=44.01 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDI 37 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~ 37 (1247)
||+||||+|..++....... ..|.-|+.....+.
T Consensus 9 GGVGKTT~a~nLA~~La~~G--~~VlliD~D~q~~~ 42 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALAEMG--KKVMIVGCDPKADS 42 (275)
T ss_pred CcCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCCc
Confidence 89999999999999888542 35777777655543
No 450
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.42 E-value=2.8 Score=40.25 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
++|+||||+|++++...
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 48999999999998664
No 451
>PRK05922 type III secretion system ATPase; Validated
Probab=71.39 E-value=14 Score=42.51 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=42.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCcc-------ccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVLQ-------EETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~-------~~~~~~~------~~~~~~~ 67 (1247)
.|+|||||++.++.... .+.+++.-++. ..+..+.+.+.......... +.....+ ...+-++
T Consensus 166 nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEy 241 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEY 241 (434)
T ss_pred CCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987643 34444444443 33444555555443332211 1111111 1222233
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 000869 68 LK-REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 242 frd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 242 FRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 32 389999999998543
No 452
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=71.34 E-value=4.6 Score=43.81 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=25.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID 36 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~ 36 (1247)
||+||||+|..++...... -..|.-|+.....+
T Consensus 9 GGvGKTT~a~nLA~~la~~--G~rvlliD~Dpq~~ 41 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKR--GKKVLQIGCDPKHD 41 (267)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 8999999999999988743 34577777765433
No 453
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=71.28 E-value=9.9 Score=38.22 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=54.2
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc--cCHHHHH------HHHHHHhCCCcc------ccch-HHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT--IDIKKIQ------QAIAEKLGLVLQ------EETE-SSRASRLHE 66 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~------~~i~~~l~~~~~------~~~~-~~~~~~~~~ 66 (1247)
.|.|||||++.++-.... ..+.++++-... .+..... -++++.++.... .... ..+...+.+
T Consensus 34 nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~lar 110 (180)
T cd03214 34 NGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLAR 110 (180)
T ss_pred CCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 699999999999876442 345455432111 1111111 124555554321 1111 112233444
Q ss_pred HHhcCCeEEEEEeCCCCccc---chhhccCCCCC-CC-CcEEEEecCChhhhh
Q 000869 67 QLKREEKILIILDNIWKRVD---LETVGIPFGDD-HR-GCKLLLTARDRTVLF 114 (1247)
Q Consensus 67 ~l~~~~~~LlvlDd~~~~~~---~~~l~~~~~~~-~~-~~~vliTtR~~~~~~ 114 (1247)
.+. ..+-++++|..-..-+ .+.+...+... .. +..||++|.+.....
T Consensus 111 al~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 111 ALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 454 6788999998754321 12221111111 12 556888888776543
No 454
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=71.23 E-value=11 Score=45.35 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=25.9
Q ss_pred CcEEEEe-cCChhhhh--hcCCcceEEcCCCCHHHHHHHHHHHh
Q 000869 100 GCKLLLT-ARDRTVLF--SMGSEKNFLVDILKEEEAWRLFKLMA 140 (1247)
Q Consensus 100 ~~~vliT-tR~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~ 140 (1247)
..++|.+ |+++.-.. .......+.+++++.+|-.++++..+
T Consensus 233 d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 233 DFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred ceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 3466654 45443211 11234577889999999988888877
No 455
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=71.11 E-value=15 Score=42.11 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHHHHhCCCcc-------ccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIAEKLGLVLQ-------EETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~~------~~~~~~ 67 (1247)
+|+|||+|+..++++... +.+++.-++.. ....++.+.+...=.+... .++...+. -.+-++
T Consensus 149 aGvgk~~L~~~ia~~~~~----~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEy 224 (436)
T PRK02118 149 SGEPYNALLARIALQAEA----DIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEK 224 (436)
T ss_pred CCCCHHHHHHHHHHhhCC----CeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999988652 45777777654 4455666655543222111 11111111 222233
Q ss_pred Hhc--CCeEEEEEeCCCCc
Q 000869 68 LKR--EEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~~--~~~~LlvlDd~~~~ 84 (1247)
++. ++++|+++||+-.-
T Consensus 225 frd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 225 FALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHhcCCCCEEEeccCchHH
Confidence 332 49999999998653
No 456
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=70.95 E-value=3.4 Score=44.79 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDI 37 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~ 37 (1247)
||+||||+|..++...... . .|.-+++....+.
T Consensus 11 GGvGKTT~a~nLA~~La~~-G--rVLliD~Dpq~~~ 43 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYSND-H--RVLVIGCDPKADT 43 (264)
T ss_pred CCCcHHHHHHHHhcccCCC-C--EEEEEeEccCccc
Confidence 8999999999999988743 2 6777887765443
No 457
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=70.52 E-value=4.7 Score=43.54 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...... ...++||+..+.
T Consensus 32 pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~ 62 (260)
T COG0467 32 PGTGKTIFALQFLYEGARE--GEPVLYVSTEES 62 (260)
T ss_pred CCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC
Confidence 7999999999999988754 888999987653
No 458
>PRK05973 replicative DNA helicase; Provisional
Probab=70.49 E-value=5.1 Score=41.88 Aligned_cols=31 Identities=39% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||++|.+++...... -..++|++....
T Consensus 73 PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes 103 (237)
T PRK05973 73 PGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT 103 (237)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 7999999999998876532 356888877654
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=70.49 E-value=4.2 Score=40.16 Aligned_cols=18 Identities=50% Similarity=0.778 Sum_probs=16.2
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
+|+||||+++++++..+.
T Consensus 8 pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 799999999999998853
No 460
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=70.46 E-value=15 Score=39.01 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=38.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc--cCHHHHHHHHHHH----hCCCc--cccchHHHHHHHHHHHhcCCe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT--IDIKKIQQAIAEK----LGLVL--QEETESSRASRLHEQLKREEK 73 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~~~~l~~~~~ 73 (1247)
+|+||||+|+++.+.+...+ ..+..++.... .+....-+.++.. ...+. ++...-+...+..+.+.+++.
T Consensus 8 SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L~~g~~ 85 (277)
T cd02029 8 SGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTYGETGR 85 (277)
T ss_pred CCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHHHcCCC
Confidence 69999999999998876431 23455544322 2222222222221 22333 455566666777777765443
No 461
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=70.12 E-value=11 Score=43.16 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=39.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQL 68 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~l 68 (1247)
.|+|||||++.++.....+ .+++...-.......++.......-+... .......+ ...+-+++
T Consensus 146 sG~GKTtLl~~i~~~~~~~---~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyf 222 (413)
T TIGR03497 146 SGVGKSTLLGMIARNAKAD---INVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYF 222 (413)
T ss_pred CCCCHHHHHHHHhCCCCCC---eEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999888754422 12333322233345555444332211111 01111111 12222333
Q ss_pred h-cCCeEEEEEeCCCC
Q 000869 69 K-REEKILIILDNIWK 83 (1247)
Q Consensus 69 ~-~~~~~LlvlDd~~~ 83 (1247)
+ .++++|+++||+-.
T Consensus 223 r~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 223 RDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHCCCCEEEEEcCcHH
Confidence 2 48999999999854
No 462
>PTZ00301 uridine kinase; Provisional
Probab=69.93 E-value=7.2 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
+|.||||+|++++....
T Consensus 12 SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELM 28 (210)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 69999999999988775
No 463
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=69.92 E-value=5.2 Score=43.70 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDI 37 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~ 37 (1247)
||+||||+|..++...... =..|.-|+.....+.
T Consensus 10 GGVGKTT~a~nLA~~La~~--G~rVLliD~Dpq~n~ 43 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAES--GKKVLVVGCDPKADC 43 (279)
T ss_pred CCCcHHHHHHHHHHHHHhC--CCEEEEEeeCCcccc
Confidence 8999999999999988743 235777777665443
No 464
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.82 E-value=11 Score=40.43 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 000869 1 MGGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~ 20 (1247)
.+|.|||+|+++.|+...++
T Consensus 185 PPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred CCCCChhHHHHHHHHhheee
Confidence 37999999999999998764
No 465
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=8.6 Score=47.92 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=43.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDNI 81 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~ 81 (1247)
-|+|||.||++++...-.. .+..+-++.++... +.+-.+.+.. ---.+...++-..+++..-.+|.||+|
T Consensus 600 dgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~e-------vskligsp~g-yvG~e~gg~LteavrrrP~sVVLfdeI 669 (898)
T KOG1051|consen 600 DGVGKTELAKALAEYVFGS--EENFIRLDMSEFQE-------VSKLIGSPPG-YVGKEEGGQLTEAVKRRPYSVVLFEEI 669 (898)
T ss_pred CchhHHHHHHHHHHHHcCC--ccceEEechhhhhh-------hhhccCCCcc-cccchhHHHHHHHHhcCCceEEEEech
Confidence 4999999999999877533 45566666554322 3333333221 111122335555565566777788999
Q ss_pred CCc
Q 000869 82 WKR 84 (1247)
Q Consensus 82 ~~~ 84 (1247)
+..
T Consensus 670 EkA 672 (898)
T KOG1051|consen 670 EKA 672 (898)
T ss_pred hhc
Confidence 876
No 466
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=69.60 E-value=6.3 Score=42.17 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=25.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI 35 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~ 35 (1247)
||+||||+|..++...... =..|.-|++....
T Consensus 11 GGvGKTt~a~nla~~la~~--g~~VlliD~D~q~ 42 (246)
T TIGR03371 11 GGVGKTTLTANLASALKLL--GEPVLAIDLDPQN 42 (246)
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEeCCCcc
Confidence 8999999999999988743 2468888887643
No 467
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=11 Score=38.38 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccchhhc------cCCCCCCCCcEEEEecCChhhhhhcCCc
Q 000869 62 SRLHEQLKREEKILIILDNIWKRVDLETVG------IPFGDDHRGCKLLLTARDRTVLFSMGSE 119 (1247)
Q Consensus 62 ~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~------~~~~~~~~~~~vliTtR~~~~~~~~~~~ 119 (1247)
.++.|-+. =++-+.|||..|.--|++++. ..+ ...|+-+||.|-.+.++......
T Consensus 153 ~EilQ~~~-lePkl~ILDE~DSGLDIdalk~V~~~i~~l--r~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 153 NEILQLLL-LEPKLAILDEPDSGLDIDALKIVAEGINAL--REEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHh-cCCCEEEecCCCcCccHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHHhhcCCC
Confidence 34444444 478899999998765554431 111 22356677777778777755433
No 468
>PRK06762 hypothetical protein; Provisional
Probab=69.56 E-value=3.2 Score=41.11 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 000869 1 MGGIGKTTLVKEVARKA 17 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~ 17 (1247)
++|+||||+|+++++..
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999875
No 469
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=69.47 E-value=12 Score=41.19 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=41.9
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcC-CccCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVS-QTIDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~ 67 (1247)
.|.|||||++.++.... .+.++..-++ ...+..++.......-+... .+.....+ ...+-++
T Consensus 78 sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEy 153 (326)
T cd01136 78 SGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEY 153 (326)
T ss_pred CCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999887644 2333444333 34555665555554332211 11111111 1122222
Q ss_pred Hh-cCCeEEEEEeCCCC
Q 000869 68 LK-REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~ 83 (1247)
++ .++.+|+++||+-.
T Consensus 154 fr~~g~~Vll~~Dsltr 170 (326)
T cd01136 154 FRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHcCCCeEEEeccchH
Confidence 22 38999999999754
No 470
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=69.17 E-value=5.5 Score=43.27 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDI 37 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~ 37 (1247)
||+||||+|..++...... =..|.-|++....+.
T Consensus 9 GGVGKTT~~~nLA~~La~~--g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKL--GKRVLQIGCDPKHDS 42 (268)
T ss_pred CcCcHHHHHHHHHHHHHhC--CCeEEEEecCccccc
Confidence 8999999999998887643 235777777665443
No 471
>PRK14529 adenylate kinase; Provisional
Probab=69.08 E-value=11 Score=39.15 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEE--EcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFS--EVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIIL 78 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~--~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Llvl 78 (1247)
.+|+||||+|+.++...... ++.....+ .+..........++++.. |. .....-....+.+++......=+||
T Consensus 8 ~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~-G~---lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR-GD---LVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc-cC---cchHHHHHHHHHHHHhccCCCcEEE
Confidence 47999999999999887532 12111111 122222233333333322 11 1122233344555554322445889
Q ss_pred eCCCCc
Q 000869 79 DNIWKR 84 (1247)
Q Consensus 79 Dd~~~~ 84 (1247)
|++-..
T Consensus 83 DGfPRt 88 (223)
T PRK14529 83 DGFPRN 88 (223)
T ss_pred eCCCCC
Confidence 998654
No 472
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=68.96 E-value=33 Score=34.42 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=56.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEc---CCccCHHHHHHHHH----HHhCCC--ccccc---hHHH----HHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEV---SQTIDIKKIQQAIA----EKLGLV--LQEET---ESSR----ASRLH 65 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~---~~~~~~~~~~~~i~----~~l~~~--~~~~~---~~~~----~~~~~ 65 (1247)
.|-||||.|...+.+.... .+ .|..+.+ .....-..+++.+. .+.+.. ....+ .... .+...
T Consensus 31 ~GkGKtt~a~g~a~ra~g~-G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a~ 108 (191)
T PRK05986 31 NGKGKSTAAFGMALRAVGH-GK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEAK 108 (191)
T ss_pred CCCChHHHHHHHHHHHHHC-CC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 5899999999999877533 12 3443433 21223333333321 001111 00011 1111 23344
Q ss_pred HHHhcCCeEEEEEeCCCCc-----ccchhhccCCCCCCCCcEEEEecCChhh
Q 000869 66 EQLKREEKILIILDNIWKR-----VDLETVGIPFGDDHRGCKLLLTARDRTV 112 (1247)
Q Consensus 66 ~~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~vliTtR~~~~ 112 (1247)
+.+..+.-=++|||.+-.. -+.+.+...+.....+.-||+|=|+..-
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 4444567789999998543 2223333334445567789999998854
No 473
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=68.45 E-value=2.2 Score=39.21 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARK 16 (1247)
Q Consensus 2 gGiGKTtla~~~~~~ 16 (1247)
+|+|||+|+..++.+
T Consensus 17 sgVGKssLl~rF~dd 31 (198)
T KOG0079|consen 17 SGVGKSSLLLRFADD 31 (198)
T ss_pred CcccHHHHHHHHhhc
Confidence 699999999999876
No 474
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=68.09 E-value=4.4 Score=41.95 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEE
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVV 27 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~ 27 (1247)
|+|.||||+.++++.....++....|+
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred cCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 899999999999998888764444444
No 475
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=68.09 E-value=9.9 Score=38.90 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIA 45 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 45 (1247)
=|+||||.++.++...+.. ...|+|..--......+.+++++
T Consensus 12 DGaGKTT~~~~L~~~l~~~--g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 12 DGAGKTTQAELLKERLEER--GIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCChHHHHHHHHH
Confidence 4999999999999999865 33777776544444444444444
No 476
>PRK13947 shikimate kinase; Provisional
Probab=67.98 E-value=3.6 Score=41.03 Aligned_cols=18 Identities=44% Similarity=0.470 Sum_probs=16.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
|+|+||||+|+++++...
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998864
No 477
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=25 Score=42.33 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc--CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR--EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~LlvlD 79 (1247)
+|||||.|++.+|+-.... | +=++++...+-.++--.=-..+| ... -++.+.+.+ .++-+++||
T Consensus 359 PGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTYIG-----amP----GrIiQ~mkka~~~NPv~LLD 424 (782)
T COG0466 359 PGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTYIG-----AMP----GKIIQGMKKAGVKNPVFLLD 424 (782)
T ss_pred CCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccccccc-----cCC----hHHHHHHHHhCCcCCeEEee
Confidence 7999999999999887632 3 33556665554432211111111 111 222333322 477889999
Q ss_pred CCCCcc------------------cchhhccCCCCCC-CCc-EEEEecCChh--hhh-hcCCcceEEcCCCCHHHHHHHH
Q 000869 80 NIWKRV------------------DLETVGIPFGDDH-RGC-KLLLTARDRT--VLF-SMGSEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 80 d~~~~~------------------~~~~l~~~~~~~~-~~~-~vliTtR~~~--~~~-~~~~~~~~~l~~l~~~ea~~l~ 136 (1247)
.+|... |-..|...+.... -=| .+.|||-|.- +.. .+..-.++++.+.+++|-.+.-
T Consensus 425 EIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IA 504 (782)
T COG0466 425 EIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIA 504 (782)
T ss_pred chhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHH
Confidence 997641 1111111111111 122 3445554332 111 3345679999999999998888
Q ss_pred HHHh
Q 000869 137 KLMA 140 (1247)
Q Consensus 137 ~~~~ 140 (1247)
+++.
T Consensus 505 k~~L 508 (782)
T COG0466 505 KRHL 508 (782)
T ss_pred HHhc
Confidence 8776
No 478
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=67.79 E-value=9.7 Score=43.74 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCc-------cccchHHH------HHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVL-------QEETESSR------ASRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~~~ 67 (1247)
.|+|||||++.++.... .+.+++.-++. .....+++.+....=.... ......++ ...+-++
T Consensus 164 sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEy 239 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF 239 (433)
T ss_pred CCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999998886543 44555554443 4445555555432111100 01111111 1222233
Q ss_pred Hh-cCCeEEEEEeCCCC
Q 000869 68 LK-REEKILIILDNIWK 83 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~ 83 (1247)
++ .|+++|+++||+-.
T Consensus 240 frd~G~~VLl~~Dsltr 256 (433)
T PRK07594 240 FRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHCCCcEEEEEeCHHH
Confidence 32 38999999999854
No 479
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=67.79 E-value=14 Score=34.98 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.2
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
+|.||||+++++.+.+.-
T Consensus 21 sGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 21 SGSGKSTIGKALSEELGL 38 (191)
T ss_pred CCCChhhHHHHHHHHhCC
Confidence 699999999999998873
No 480
>PRK05439 pantothenate kinase; Provisional
Probab=67.72 E-value=20 Score=39.31 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=35.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHH--HHHHhCCCccccchHHHHHHHHHHHhcCCe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQA--IAEKLGLVLQEETESSRASRLHEQLKREEK 73 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (1247)
+|+||||+|+.+.........-..+.-++..+-....+.+.. +...-| .++.-+.+........++.|+.
T Consensus 95 ~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 95 VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHHHcCCC
Confidence 699999999999886653211123444554443322222221 111111 1222344455666666765554
No 481
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=67.70 E-value=28 Score=37.58 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=41.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcccc-------chHHHHHHHHHHHhcCCeE
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEE-------TESSRASRLHEQLKREEKI 74 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 74 (1247)
+|+|||||+.++++....+ . .++.+. .+..+..+. ..++..+.+..+. .....+.....++.....-
T Consensus 113 pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~Da--~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~~~~d 186 (290)
T PRK10463 113 PGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVNDA--ARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNG 186 (290)
T ss_pred CCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHHH--HHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhhcCCc
Confidence 7999999999999987643 3 333332 222233221 1233344332211 1233444555555544456
Q ss_pred EEEEeCCCC
Q 000869 75 LIILDNIWK 83 (1247)
Q Consensus 75 LlvlDd~~~ 83 (1247)
++|++++..
T Consensus 187 ~liIEnvGn 195 (290)
T PRK10463 187 ILFIENVGN 195 (290)
T ss_pred EEEEECCCC
Confidence 778899874
No 482
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=67.70 E-value=11 Score=44.79 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=63.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhc--CCeEEEEEe
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKR--EEKILIILD 79 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~LlvlD 79 (1247)
+|||||.+|+.+++... +++| =++++...+..++--.--..+| . ... ++.+.+++ -.+-|+.+|
T Consensus 447 PGVGKTSI~kSIA~ALn-RkFf----RfSvGG~tDvAeIkGHRRTYVG-----A-MPG---kiIq~LK~v~t~NPliLiD 512 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALN-RKFF----RFSVGGMTDVAEIKGHRRTYVG-----A-MPG---KIIQCLKKVKTENPLILID 512 (906)
T ss_pred CCCCcccHHHHHHHHhC-CceE----EEeccccccHHhhcccceeeec-----c-CCh---HHHHHHHhhCCCCceEEee
Confidence 79999999999998875 3333 3455665555433211111111 1 112 23333332 366678889
Q ss_pred CCCCc------------------ccchhhccCCCCC-CCCcEEEE-ecCChh--hhh-hcCCcceEEcCCCCHHHHHHHH
Q 000869 80 NIWKR------------------VDLETVGIPFGDD-HRGCKLLL-TARDRT--VLF-SMGSEKNFLVDILKEEEAWRLF 136 (1247)
Q Consensus 80 d~~~~------------------~~~~~l~~~~~~~-~~~~~vli-TtR~~~--~~~-~~~~~~~~~l~~l~~~ea~~l~ 136 (1247)
.||.. +|-..|..-+.+. --=|||++ .|-|.- +.. ....-..+++.+...+|-.++-
T Consensus 513 EvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA 592 (906)
T KOG2004|consen 513 EVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIA 592 (906)
T ss_pred hhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHH
Confidence 98764 1111121111111 11355554 332221 000 1234568888888888887777
Q ss_pred HHHh
Q 000869 137 KLMA 140 (1247)
Q Consensus 137 ~~~~ 140 (1247)
+++.
T Consensus 593 ~~yL 596 (906)
T KOG2004|consen 593 ERYL 596 (906)
T ss_pred HHhh
Confidence 7665
No 483
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=67.45 E-value=6.1 Score=43.04 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTID 36 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~ 36 (1247)
||+||||+|..++...... =..|.-|++..+.+
T Consensus 10 GGVGKTT~~~nLA~~La~~--G~rVLlID~Dpq~~ 42 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEM--GKKVMVVGCDPKAD 42 (274)
T ss_pred CCccHHHHHHHHHHHHHHC--CCcEEEEecCCccc
Confidence 8999999999999988743 23577777665544
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=67.34 E-value=17 Score=36.19 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHhcCC--eEEEEEeCCCCccc---chhhccCCCC-CCCCcEEEEecCChhhhhhcCCcceEEc
Q 000869 64 LHEQLKREE--KILIILDNIWKRVD---LETVGIPFGD-DHRGCKLLLTARDRTVLFSMGSEKNFLV 124 (1247)
Q Consensus 64 ~~~~l~~~~--~~LlvlDd~~~~~~---~~~l~~~~~~-~~~~~~vliTtR~~~~~~~~~~~~~~~l 124 (1247)
+.+.+. .. +-++++|..-..-+ .+.+...+.. ...|..||++|.+..... .....+.+
T Consensus 98 laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~--~~d~i~~l 161 (176)
T cd03238 98 LASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS--SADWIIDF 161 (176)
T ss_pred HHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 344444 45 67888898754311 1222111111 113566888888887643 23444444
No 485
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=67.20 E-value=8.7 Score=44.12 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc-cCHHHHHHHHH-HHhCCCc-----cccchH------HHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT-IDIKKIQQAIA-EKLGLVL-----QEETES------SRASRLHEQL 68 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~-~~l~~~~-----~~~~~~------~~~~~~~~~l 68 (1247)
.|+|||||++.++.... -+.++..-+++. ....+..+... ..+.... .++... .....+.+++
T Consensus 166 sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyF 241 (434)
T PRK08472 166 SGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYF 241 (434)
T ss_pred CCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHHHHHHHHHH
Confidence 59999999999986543 234444444333 22333333221 1110000 001111 1112233333
Q ss_pred h-cCCeEEEEEeCCCCc
Q 000869 69 K-REEKILIILDNIWKR 84 (1247)
Q Consensus 69 ~-~~~~~LlvlDd~~~~ 84 (1247)
+ .|+++|+++||+-.-
T Consensus 242 rd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 242 KNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHcCCCEEEecccchHH
Confidence 3 389999999998543
No 486
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=67.11 E-value=3.8 Score=39.97 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 000869 1 MGGIGKTTLVKEVARKARKD 20 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~ 20 (1247)
|.|+||||+.+++++...-.
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCC
Confidence 67999999999999987643
No 487
>PRK00131 aroK shikimate kinase; Reviewed
Probab=67.08 E-value=3.8 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 000869 1 MGGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~ 18 (1247)
++|+||||+|++++....
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999998863
No 488
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=66.70 E-value=7.6 Score=35.55 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
-||+||||++..++.....+ -..+.-++...
T Consensus 7 kgG~GKTt~a~~la~~l~~~--g~~V~~id~D~ 37 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEK--GKPVLAIDADP 37 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCcEEEEECCc
Confidence 38999999999999988643 33566666554
No 489
>PRK06820 type III secretion system ATPase; Validated
Probab=66.64 E-value=19 Score=41.51 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=19.6
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCc
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQT 34 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~ 34 (1247)
+|+|||||++.++.... .+.+++.-++..
T Consensus 172 sG~GKStLl~~I~~~~~----~dv~V~~~iGer 200 (440)
T PRK06820 172 AGVGKSTLLGMLCADSA----ADVMVLALIGER 200 (440)
T ss_pred CCCChHHHHHHHhccCC----CCEEEEEEEccC
Confidence 69999999998876533 345555555444
No 490
>PF13245 AAA_19: Part of AAA domain
Probab=66.63 E-value=11 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.168 Sum_probs=16.2
Q ss_pred CCccHHHHHHHHHHHhhh-c-cCCCeEEEEE
Q 000869 2 GGIGKTTLVKEVARKARK-D-KLFDRVVFSE 30 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~-~-~~f~~~~w~~ 30 (1247)
+|.|||+++.+.+..... . ..-+.+..+.
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 799999555555554432 1 1133455553
No 491
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.56 E-value=1.9 Score=46.50 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCcc-ccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQ-EETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
.|+|||++++.+.......+ | .+.-+.++...+...+++.+-..+..... .-.. ..+++.++.+||
T Consensus 42 ~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-----------~~~k~lv~fiDD 108 (272)
T PF12775_consen 42 SGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP-----------PGGKKLVLFIDD 108 (272)
T ss_dssp TTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE-----------ESSSEEEEEEET
T ss_pred CCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-----------CCCcEEEEEecc
Confidence 69999999999887654321 1 24445666555444443322221110000 0000 026888888899
Q ss_pred CCCc
Q 000869 81 IWKR 84 (1247)
Q Consensus 81 ~~~~ 84 (1247)
+.-.
T Consensus 109 lN~p 112 (272)
T PF12775_consen 109 LNMP 112 (272)
T ss_dssp TT-S
T ss_pred cCCC
Confidence 8543
No 492
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=66.39 E-value=6.2 Score=42.32 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ 33 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~ 33 (1247)
||+||||+|..++....... ..|+-|++..
T Consensus 10 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 39 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLG--KKVLALDADI 39 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 89999999999998886431 3577777654
No 493
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=66.30 E-value=12 Score=39.89 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCCccHHHHHHHHHHHhhhccCCCeEEEEEcCCccCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHhcCCeEEEEEeC
Q 000869 1 MGGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTIDIKKIQQAIAEKLGLVLQEETESSRASRLHEQLKREEKILIILDN 80 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd 80 (1247)
+.|+|||+-++.+++. .+.++.+..+..++...++..+......... ....+....+..++. +..-++|.|.
T Consensus 102 ~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~-~~~~d~~~~~~~~l~-~~~~~iivDE 173 (297)
T COG2842 102 YAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD-GTINDLTERLMIRLR-DTVRLIIVDE 173 (297)
T ss_pred cccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHc-cCcceeeeeh
Confidence 4799999999999865 3444556667777766666666544332222 122333344444454 7888889998
Q ss_pred CCCc
Q 000869 81 IWKR 84 (1247)
Q Consensus 81 ~~~~ 84 (1247)
.+..
T Consensus 174 A~~L 177 (297)
T COG2842 174 ADRL 177 (297)
T ss_pred hhcc
Confidence 8764
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=66.25 E-value=4.8 Score=35.23 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=16.4
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
+|+||||++..++.....
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999999874
No 495
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=65.94 E-value=16 Score=42.15 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCC-ccCHHHHHHHHHHHhCCCcc-------ccchHHHH------HHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQ-TIDIKKIQQAIAEKLGLVLQ-------EETESSRA------SRLHEQ 67 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~------~~~~~~ 67 (1247)
.|+|||||++.++.... .+.++...++. ......+...+...-+.... +.....+. ..+-++
T Consensus 177 sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEy 252 (451)
T PRK05688 177 TGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEY 252 (451)
T ss_pred CCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998876432 34433333332 33455555555444322211 11111111 122222
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 000869 68 LK-REEKILIILDNIWKR 84 (1247)
Q Consensus 68 l~-~~~~~LlvlDd~~~~ 84 (1247)
++ .|+++|+++||+-.-
T Consensus 253 frd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 253 FRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHCCCCEEEEecchhHH
Confidence 22 489999999998543
No 496
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=65.48 E-value=10 Score=38.73 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.9
Q ss_pred CCccHHHHHHHHHHHhhh
Q 000869 2 GGIGKTTLVKEVARKARK 19 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (1247)
+|.||||+|++++..+..
T Consensus 17 SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 17 SGSGKTTVAKELSEQLGV 34 (218)
T ss_pred CCCCHHHHHHHHHHHhCc
Confidence 689999999999998763
No 497
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=65.47 E-value=21 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEcCCcc-CHHHHHHHHHH
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEVSQTI-DIKKIQQAIAE 46 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~ 46 (1247)
.|+|||+|+.+++++.. -+.++++-+++.. ...+++..+-+
T Consensus 236 ~G~GKTvl~~~iak~a~----adivVyvg~GERg~E~~e~l~ef~~ 277 (586)
T PRK04192 236 FGSGKTVTQHQLAKWAD----ADIVIYVGCGERGNEMTEVLEEFPE 277 (586)
T ss_pred CCCCHHHHHHHHHhcCC----CCEEEEEEcCcChHHHHHHHHHHHh
Confidence 59999999999998743 4688999888654 46666766654
No 498
>PRK10646 ADP-binding protein; Provisional
Probab=65.37 E-value=4 Score=39.19 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred CccHHHHHHHHHHHhhh
Q 000869 3 GIGKTTLVKEVARKARK 19 (1247)
Q Consensus 3 GiGKTtla~~~~~~~~~ 19 (1247)
|+||||+++.+++..-+
T Consensus 38 GaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 38 GAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999998753
No 499
>COG1158 Rho Transcription termination factor [Transcription]
Probab=65.37 E-value=19 Score=38.71 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=50.3
Q ss_pred CCccHHHHHHHHHHHhhhccCCCeEEEEEc--CCccCHHHHHHHHHHHhCC-Cc--cccchHHHHHHHHHH----HhcCC
Q 000869 2 GGIGKTTLVKEVARKARKDKLFDRVVFSEV--SQTIDIKKIQQAIAEKLGL-VL--QEETESSRASRLHEQ----LKREE 72 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~f~~~~w~~~--~~~~~~~~~~~~i~~~l~~-~~--~~~~~~~~~~~~~~~----l~~~~ 72 (1247)
+-.|||++.+.+++... .++.+...||-+ ..+..+.++++.+--.+-. .. +.......++.+..+ ...++
T Consensus 182 PkaGKT~lLq~IA~aIt-~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~k 260 (422)
T COG1158 182 PKAGKTTLLQNIANAIT-TNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGK 260 (422)
T ss_pred CCCCchHHHHHHHHHHh-cCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 46899999999999886 467888777654 3455566777766433311 11 122233333333333 33478
Q ss_pred eEEEEEeCCCCc
Q 000869 73 KILIILDNIWKR 84 (1247)
Q Consensus 73 ~~LlvlDd~~~~ 84 (1247)
.+++.+|.+-..
T Consensus 261 DVVILLDSITRL 272 (422)
T COG1158 261 DVVILLDSITRL 272 (422)
T ss_pred cEEEEehhHHHH
Confidence 888888987543
No 500
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=65.34 E-value=14 Score=42.58 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=13.9
Q ss_pred CCccHHHHHHHHHHHhh
Q 000869 2 GGIGKTTLVKEVARKAR 18 (1247)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (1247)
.|+|||||++.++....
T Consensus 164 sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 164 SGVGKSVLLGMITRYTQ 180 (434)
T ss_pred CCCCccHHHHHHhcccC
Confidence 59999999998877543
Done!