Query 000869
Match_columns 1247
No_of_seqs 430 out of 6011
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 16:50:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000869.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_638-642//hhsearch_pdb/000869hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 338.3 36.3 417 367-908 73-500 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 333.3 31.4 680 311-1182 38-744 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 319.8 14.9 282 1-303 160-473 (549)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 301.9 43.6 173 325-513 7-185 (680)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 301.2 39.2 149 348-514 8-160 (680)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 285.0 25.1 277 1-301 155-452 (1249)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 279.5 38.8 148 325-477 14-166 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 278.8 39.3 172 325-512 15-192 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 277.5 38.3 152 321-476 31-193 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 269.6 41.2 154 320-477 31-192 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=338.28 Aligned_cols=417 Identities=16% Similarity=0.063 Sum_probs=163.5
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CC--CCCCCCCCCEEECCCCCCC-CCCHHH-CCCCC
Q ss_conf 319998749991599775589353267788699825867789--61--2258887868875278897-675321-38887
Q 000869 367 FTGMKKLKVVDFCRMQFFSLPPSIDHLLNLQTLCLDQCILGD--VA--IIGKLKNLEILSFSGSGIV-KLPEEL-GQLTK 440 (1247)
Q Consensus 367 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~~--~~~~L~~L~~L~L~~~~i~-~lp~~i-~~L~~ 440 (1247)
+..+++|++++++.+.+..+|+.|+.+++|++|+|++|.+.. +. .++++++|++|++++|.+. ..|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCHHH---HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 8688342777786439123---2299998799902474443349999533345620017999986999761489877801
Q 000869 441 LRHLDLSNCFKLKVIAPNV---ISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNILPEG 517 (1247)
Q Consensus 441 L~~L~L~~~~~l~~~~~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 517 (1247)
|++|++++| .+....+.. +.++.+|++|++.+|.+. ....+..+++|+.|+++.+......+.
T Consensus 153 L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 218 (768)
T 3rgz_A 153 LEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKIS-------------GDVDVSRCVNLEFLDVSSNNFSTGIPF 218 (768)
T ss_dssp CSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEE-------------SCCBCTTCTTCCEEECCSSCCCSCCCB
T ss_pred CCEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCCC-------------CCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 998989798-358858715566435898898989788034-------------657845478689898928827887711
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 110235605687237555677776765333566773024553112235441476-3112110125430148730112682
Q 000869 518 FFARKLERFKISVGEAAFLPFGATSNDACFRLSWPLFMINDSETLRTLKLKLNS-TTISSKKLEGIKNVEYLCLDKLQGI 596 (1247)
Q Consensus 518 ~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~ 596 (1247)
+ ....+|+.|++..+. ....+..+..+++|+.|++.++...
T Consensus 219 l--------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 219 L--------------------------------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp C--------------------------------------TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred C--------------------------------------CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 1--------------------------------------26999998979488587816577744888898989888665
Q ss_pred CHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 01200223247699768996149984051247775766774554442112333342000137555311346535798116
Q 000869 597 KNVLFELDTEGFSQLKHLHVQNNPDFMCIVDSMERVPLHDAFPLLESLNLYNLMKLERICQDRLSVQSFNELKTIRVEHC 676 (1247)
Q Consensus 597 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 676 (1247)
.. .+. ..+++|++|++.+|.-...++. + ....+++|++|.+.++.-... .+..++.+++|+.|.+++|
T Consensus 261 ~~-~~~---~~l~~L~~L~L~~n~l~~~ip~---~--~~~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 261 GP-IPP---LPLKSLQYLSLAENKFTGEIPD---F--LSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp ES-CCC---CCCTTCCEEECCSSEEEESCCC---C--SCTTCTTCSEEECCSSEEEEC---CCGGGGGCTTCCEEECCSS
T ss_pred CC-CCC---CCCCCCCEEECCCCCCCCCCCH---H--HHHHCCCCCEEECCCCCCCCC---CCHHHHCCCCCCEEECCCC
T ss_conf 71-672---4368789897917855772588---8--884468688998968967784---2367755877667789788
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 99752131477620476647844367257898721897532456631247-54657549987731211000101001353
Q 000869 677 GQLSNIFLLSAAKCLPRLETIAVINCRNIQEIFAVGGGDVVIDHQKIEFG-QLRTLCLGNLPVLRSFCREVEKNRQAQGL 755 (1247)
Q Consensus 677 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 755 (1247)
.-...++. .....+++|++|+++++.-... ....+..++ +|+.|+++++.....++....
T Consensus 329 ~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~----------~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-------- 389 (768)
T 3rgz_A 329 NFSGELPM-DTLLKMRGLKVLDLSFNEFSGE----------LPESLTNLSASLLTLDLSSNNFSGPILPNLC-------- 389 (768)
T ss_dssp EEEEECCH-HHHTTCTTCCEEECCSSEEEEC----------CCTTHHHHTTTCSEEECCSSEEEEECCTTTT--------
T ss_pred CCCCCCCH-HHHHCCCCCCEEECCCCCCCCC----------CCHHHHHHHCCCCEEECCCCCCCCCCCHHHH--------
T ss_conf 52573797-8872488887884847843762----------3098986322771998627874787676665--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 11001322222244689965544411148755110244332001322522363476665338977247661111563478
Q 000869 756 QETCYNEISRLKDKLDTSSPLLNEKVVFPSLEALDLRQINVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASML 835 (1247)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~ 835 (1247)
...+++|++|++.+|.+....... +..+++|+.|++++| .++...| ..+
T Consensus 390 ------------------------~~~~~~L~~L~L~~n~l~~~~p~~-----l~~l~~L~~L~Ls~N-~l~~~~p-~~l 438 (768)
T 3rgz_A 390 ------------------------QNPKNTLQELYLQNNGFTGKIPPT-----LSNCSELVSLHLSFN-YLSGTIP-SSL 438 (768)
T ss_dssp ------------------------CSTTCCCCEEECCSSEEEEECCGG-----GGGCTTCCEEECCSS-EEESCCC-GGG
T ss_pred ------------------------HCCCCCCCEEECCCCCCCCCCCHH-----HHCCCCCCEEECCCC-CCCCCCC-HHH
T ss_conf ------------------------332477618989778465424877-----756898798989588-4668546-777
Q ss_pred HHHCCCCEEEECCCCCCCEEECCCCCCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 5410147154603422200003477777776701056657100146775543347887688888648998027
Q 000869 836 RSFEHLQHLEIACCERLQEIISKGGTDDQVTPNFVFPGLTTLRLIGLPKLKSLYPGMHTSEWPALKVLNVLAC 908 (1247)
Q Consensus 836 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 908 (1247)
..+++|+.|++++|.....++..- ..+++|+.|.+.++.-...++.. ...+++|+.|++++|
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQEL---------MYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNN 500 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGG---------GGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSS
T ss_pred HCCCCCCEEECCCCCCCCCCCHHH---------CCCCCCEEEEECCCCCCCCCCHH--HHCCCCCCEEECCCC
T ss_conf 449988989897881547189788---------28777329990199513758878--816998998975399
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=333.34 Aligned_cols=680 Identities=15% Similarity=0.088 Sum_probs=376.3
Q ss_pred CCCCCCCHHH-CCCCEEEECCCCCCCC----CCCC-CCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
Q ss_conf 3458998211-0343389824786001----2375-89998449993589983343465344319998749991599775
Q 000869 311 EVWEWPDEDA-LRKCYAISIRDSSIHE----LLEG-LECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFF 384 (1247)
Q Consensus 311 ~~~~~~~~~~-~~~~~~l~l~~~~i~~----~~~~-~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~ 384 (1247)
+++.|..... ..+++.+++..+.+.. +++. .++++|+.++++.+... .++. .|..+++|++|++++|.+.
T Consensus 38 ~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~---~l~~-~~~~l~~L~~L~Ls~n~l~ 113 (768)
T 3rgz_A 38 NPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN---GSVS-GFKCSASLTSLDLSRNSLS 113 (768)
T ss_dssp CGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE---ECCC-CCCCCTTCCEEECCSSEEE
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC---CCCH-HHCCCCCCCEEECCCCCCC
T ss_conf 87688413878992789877899867755766965731680224678688867---8703-3245788998989898578
Q ss_pred -CCCC--CCCCCCCCCEEECCCCCCCCC--CC-CCCCCCCCEEECCCCCCCCCC-HH---HCCCCCCCEEECCCCCCCCC
Q ss_conf -5893--532677886998258677896--12-258887868875278897675-32---13888786883427777864
Q 000869 385 -SLPP--SIDHLLNLQTLCLDQCILGDV--AI-IGKLKNLEILSFSGSGIVKLP-EE---LGQLTKLRHLDLSNCFKLKV 454 (1247)
Q Consensus 385 -~lp~--~i~~l~~L~~L~L~~~~l~~~--~~-~~~L~~L~~L~L~~~~i~~lp-~~---i~~L~~L~~L~L~~~~~l~~ 454 (1247)
.+|. .++++++|++|++++|.+... .. +.++++|++|++++|.+...+ .. +.++++|++|++++| .+..
T Consensus 114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 192 (768)
T 3rgz_A 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISG 192 (768)
T ss_dssp EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEES
T ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCC-CCCC
T ss_conf 707896787278899989896882677479778563889998989798358858715566435898898989788-0346
Q ss_pred CCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCHH-HCCCCCEEEEEECC
Q ss_conf 39123229999879990247444334999953334562001799998699976148987-78011-10235605687237
Q 000869 455 IAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTTLEVHVKNDNI-LPEGF-FARKLERFKISVGE 532 (1247)
Q Consensus 455 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~-~~~~L~~l~l~~~~ 532 (1247)
..+ +..+.+|++|++.+|.+. ..+..++.+++|+.|+++.+.... .+..+ .+++|+.+.++.+.
T Consensus 193 ~~~--~~~l~~L~~L~Ls~n~l~------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 193 DVD--VSRCVNLEFLDVSSNNFS------------TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCB--CTTCTTCCEEECCSSCCC------------SCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCC--CCCCCCCCEEECCCCCCC------------CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 578--454786898989288278------------877111269999989794885878165777448888989898886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 55567777676533356677302455311223544147631121101254301487301126820120022324769976
Q 000869 533 AAFLPFGATSNDACFRLSWPLFMINDSETLRTLKLKLNSTTISSKKLEGIKNVEYLCLDKLQGIKNVLFELDTEGFSQLK 612 (1247)
Q Consensus 533 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 612 (1247)
+.. ..+ ...+++|++|++.++.....+ +......+++|+
T Consensus 259 l~~---------------------------------------~~~-~~~l~~L~~L~L~~n~l~~~i-p~~~~~~~~~L~ 297 (768)
T 3rgz_A 259 FVG---------------------------------------PIP-PLPLKSLQYLSLAENKFTGEI-PDFLSGACDTLT 297 (768)
T ss_dssp CEE---------------------------------------SCC-CCCCTTCCEEECCSSEEEESC-CCCSCTTCTTCS
T ss_pred CCC---------------------------------------CCC-CCCCCCCCEEECCCCCCCCCC-CHHHHHHCCCCC
T ss_conf 657---------------------------------------167-243687898979178557725-888884468688
Q ss_pred EEEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCC
Q ss_conf 89961499840512477757667745544421123333420001375553113465357981169975213147762047
Q 000869 613 HLHVQNNPDFMCIVDSMERVPLHDAFPLLESLNLYNLMKLERICQDRLSVQSFNELKTIRVEHCGQLSNIFLLSAAKCLP 692 (1247)
Q Consensus 613 ~L~l~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 692 (1247)
+|++.+|.-...++ .....+++|+.|.+.++.-...+.. ..+..+++|+.|.+++|.-...++. . ...++
T Consensus 298 ~L~Ls~n~l~~~~p------~~~~~l~~L~~L~L~~n~l~~~ip~--~~l~~l~~L~~L~Ls~n~l~~~~p~-~-l~~l~ 367 (768)
T 3rgz_A 298 GLDLSGNHFYGAVP------PFFGSCSLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELPE-S-LTNLS 367 (768)
T ss_dssp EEECCSSEEEECCC------GGGGGCTTCCEEECCSSEEEEECCH--HHHTTCTTCCEEECCSSEEEECCCT-T-HHHHT
T ss_pred EEECCCCCCCCCCC------HHHHCCCCCCEEECCCCCCCCCCCH--HHHHCCCCCCEEECCCCCCCCCCCH-H-HHHHH
T ss_conf 99896896778423------6775587766778978852573797--8872488887884847843762309-8-98632
Q ss_pred -CCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -6647844367257898721897532456631247546575499877312110001010013531100132222224468
Q 000869 693 -RLETIAVINCRNIQEIFAVGGGDVVIDHQKIEFGQLRTLCLGNLPVLRSFCREVEKNRQAQGLQETCYNEISRLKDKLD 771 (1247)
Q Consensus 693 -~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1247)
+|+.|+++++.-...++... ....+++|+.|.+.++.....++...
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~--------~~~~~~~L~~L~L~~n~l~~~~p~~l------------------------- 414 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNL--------CQNPKNTLQELYLQNNGFTGKIPPTL------------------------- 414 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTT--------TCSTTCCCCEEECCSSEEEEECCGGG-------------------------
T ss_pred CCCCEEECCCCCCCCCCCHHH--------HHCCCCCCCEEECCCCCCCCCCCHHH-------------------------
T ss_conf 277199862787478767666--------53324776189897784654248777-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCC
Q ss_conf 99655444111487551102443320013225223634766653389772476611115634785410147154603422
Q 000869 772 TSSPLLNEKVVFPSLEALDLRQINVEKIWHDQLSAAMFPCFQNLTRLILWICPKLKYVFSASMLRSFEHLQHLEIACCER 851 (1247)
Q Consensus 772 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 851 (1247)
..+++|+.|+++++.+....... +..+++|+.|++++|. ++...| ..+..+++|+.|++++|.-
T Consensus 415 ---------~~l~~L~~L~Ls~N~l~~~~p~~-----l~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 415 ---------SNCSELVSLHLSFNYLSGTIPSS-----LGSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ---------GGCTTCCEEECCSSEEESCCCGG-----GGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSSCC
T ss_pred ---------HCCCCCCEEECCCCCCCCCCCHH-----HHCCCCCCEEECCCCC-CCCCCC-HHHCCCCCCEEEEECCCCC
T ss_conf ---------56898798989588466854677-----7449988989897881-547189-7882877732999019951
Q ss_pred CCEEECCCCCCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 20000347777777670105665710014677554334788768888864899802786100012345434333334688
Q 000869 852 LQEIISKGGTDDQVTPNFVFPGLTTLRLIGLPKLKSLYPGMHTSEWPALKVLNVLACDQVTVFASELFHFCKISEENKLD 931 (1247)
Q Consensus 852 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~ 931 (1247)
...++.. ...+++|+.|.+.++.-...++... ..+++|+.|++++|.-...+|...
T Consensus 479 ~~~~p~~---------l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l------------- 534 (768)
T 3rgz_A 479 TGEIPSG---------LSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAEL------------- 534 (768)
T ss_dssp CSCCCGG---------GGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGG-------------
T ss_pred CCCCCHH---------HHCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCCHHH-------------
T ss_conf 3758878---------8169989989753995189687688--568999989897894337488777-------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECC---
Q ss_conf 7535443101222466506621466842-312467786645661189972178745555447886427764899628---
Q 000869 932 TPARQSLFFLEKVFPNLEELGLNGKDIR-MIWHGNFPQHLFGSLKVLRLADDHVSAAGFPLGLLERFNNLEKLRLDG--- 1007 (1247)
Q Consensus 932 ~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~i~~--- 1007 (1247)
..+++|+.|+++++.+. .++...+.. ..+..+.+.. ..+...+.+
T Consensus 535 -----------~~l~~L~~L~Ls~N~l~g~ip~~~~~~---~~~~~~~~~~-----------------~~~~~~~~~~~~ 583 (768)
T 3rgz_A 535 -----------GDCRSLIWLDLNTNLFNGTIPAAMFKQ---SGKIAANFIA-----------------GKRYVYIKNDGM 583 (768)
T ss_dssp -----------GGCTTCCEEECCSSEEESBCCGGGGTT---TTCBCCSTTC-----------------SCEEEEEECCSC
T ss_pred -----------CCCCCCCEEECCCCCCCCCCCHHHHCC---CCHHHHHCCC-----------------CCCCCCCCCCCC
T ss_conf -----------088989989898884688279578604---2122320134-----------------542111134443
Q ss_pred ---CCCCEEECCCCC-CCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf ---884113115997-5445643233225660454464132104996662235412799715776410148864224576
Q 000869 1008 ---CSCKEILSNDGH-LDKHGGKLAQIKSLRLVRLNDLNQLWKEDSQMDSMFQYVDDVLIHGCDSLLILLPSSSVSFWNL 1083 (1247)
Q Consensus 1008 ---c~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~~~L 1083 (1247)
|..........+ .......++.+..+.+... .+....+..+..+++|+.|+++++. +...+|.....+++|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR----VYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYL 658 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC----EEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGGGGGCTTC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC----EECCCCCHHHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCC
T ss_conf 22223322210013556323200232110011331----0046274334033566579785880-155587788414157
Q ss_pred CEEEECCCCCCHHCCHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCCCEEECCCCEEECCCCCCCCEECCCCEEEE
Q ss_conf 58987256671000000677410134468875665511420445642444410204302654256878540013773555
Q 000869 1084 TSLEVSSCKKLINLVASSAAKSLVALVKMQVFGCRAMTQVVKSEGNQLAKEEIVFSKLKRLSLVDLDSLASFCSGNYIFK 1163 (1247)
Q Consensus 1084 ~~L~i~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~ 1163 (1247)
+.|+++++.--..+| ...+.+++|+.|+++++.....+|.... .+++|+.|.+++++--..+|.+. .
T Consensus 659 ~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~l~--------~l~~L~~L~ls~N~l~g~iP~~~---~ 725 (768)
T 3rgz_A 659 FILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQAMS--------ALTMLTEIDLSNNNLSGPIPEMG---Q 725 (768)
T ss_dssp CEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGGGG--------GCCCCSEEECCSSEEEEECCSSS---S
T ss_pred CEEECCCCCCCCCCC--HHHHCCCCCCEEECCCCCCCCCCCHHHH--------CCCCCCEEECCCCCCCCCCCCCH---H
T ss_conf 878486880388789--6784777899898978802386886775--------78878978796881556089960---1
Q ss_pred CCCCCEEEECCCCCCCCCC
Q ss_conf 7985758980669853348
Q 000869 1164 FPSLEYLFVVGCPKMNIFT 1182 (1247)
Q Consensus 1164 ~~sL~~L~i~~C~~l~~lp 1182 (1247)
+.++....+.++|.+--.|
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GGGSCGGGGCSCTEEESTT
T ss_pred HCCCCHHHHCCCCHHCCCC
T ss_conf 0248977756983210887
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=319.76 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=209.2
Q ss_pred CCCCCHHHHHHHHHH--HHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHHHCCCCC--------CCCHHHHHHHHHHHH
Q ss_conf 998619999999999--96221399849999907754--999999999999398731--------224479999999999
Q 000869 1 MGGIGKTTLVKEVAR--KARKDKLFDRVVFSEVSQTI--DIKKIQQAIAEKLGLVLQ--------EETESSRASRLHEQL 68 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~--~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~~~~~l 68 (1247)
|||+||||||+++|+ +.+.+.+|++++|+++++.. +...++..++.+++.... ..+.......+.+.+
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99998899999999840698746699579999789878799999999999985375534555533146999999999997
Q ss_pred HCCC-EEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCHHHHHHCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 4599-199999499994240000167888999949999159814554139-96239838999899999999980999998
Q 000869 69 KREE-KILIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFSMG-SEKNFLVDILKEEEAWRLFKLMAGDDVEN 146 (1247)
Q Consensus 69 ~~~~-~~LlvlD~v~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 146 (1247)
. ++ |+|||+||||+.+++ .+. ..+||+||||||++.++...+ ...+|+|++|+++++++||.+.++.....
T Consensus 240 ~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 312 (549)
T 2a5y_B 240 I-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG 312 (549)
T ss_dssp T-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred C-CCCCEEEEEECCCCCHHH-CCC-----CCCCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 6-898489999799971441-543-----269988999749779999708897389899989899999999874489985
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH-
Q ss_conf 3548999999999089846999999999649916999999985399888889998457989999880889042899998-
Q 000869 147 RELKSTATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNFGGVPAEAYLTIELSYNYLEGEKLKNIFL- 225 (1247)
Q Consensus 147 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~- 225 (1247)
.+..+.+.+|+++|+|+||||.++|+.++.+. ++|...+....... ....+..++.+||+.|+++ .+.||.
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~------~~~~i~~~l~~Sy~~L~~~-lk~~f~~ 384 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR------GLVGVECITPYSYKSLAMA-LQRCVEV 384 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH------CSSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCC------CHHHHHHHHHCCCCCCCHH-HHHHHHC
T ss_conf 56899999999995998399999999844344-89998757876136------4777898975162022679-9999752
Q ss_pred ----------HCCCCCCCCCHHHHHHHHHHC--CCCCCCC---CHHHHHHHHHHHHHHHHHCCEEECCC--CCCCEECCH
Q ss_conf ----------515789986856799998850--7645555---08878878999999996425010157--898165009
Q 000869 226 ----------LCSLMGNEIATSDLFKYCMCL--GIFKGVD---TMENARTNFYALIHQLRDCFLLLGGD--NNEKLSMHD 288 (1247)
Q Consensus 226 ----------~~a~fp~~i~~~~l~~~w~~~--g~~~~~~---~~~~~~~~~~~~l~~L~~~~li~~~~--~~~~~~~H~ 288 (1247)
+||+||++...+ +.+|+++ |++.... ..++..+ ++++|++++|++... ....|+|||
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred CCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHH----HHHHHHHCCCEEEECCCCCEEEEECH
T ss_conf 6522336743235608997666--53311013550026778999999999----99999875883671479804999676
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999986401345
Q 000869 289 VVRAVAISIACRDQN 303 (1247)
Q Consensus 289 lvr~~~~~~~~~e~~ 303 (1247)
+||+||++++.+++.
T Consensus 459 lv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 459 IIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999889899
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=301.88 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=116.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 38982478600123758999844999358998334346534431999874999159977558-93532677886998258
Q 000869 325 YAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQ 403 (1247)
Q Consensus 325 ~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 403 (1247)
+.++..++.+..+|.... +++++|++++|.+. .++...|..+++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCCCCC-CCCCEEECCCCCCC---CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 744877798052641248-88768889899778---75978871787675887889964856977874066768888999
Q ss_pred CCCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 677896--12258887868875278897675-321388878688342777786439123229999879990247444334
Q 000869 404 CILGDV--AIIGKLKNLEILSFSGSGIVKLP-EELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWED 480 (1247)
Q Consensus 404 ~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 480 (1247)
|.+..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++.+|.+.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 158 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ--- 158 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC---
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCC---
T ss_conf 8567568545303888898989899668539667415678888989899-524667211124556777974588436---
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCEEEEEECCCCC
Q ss_conf 99995333456200--1799998699976148987
Q 000869 481 EGPNSETINSRLDE--LMHLPRLTTLEVHVKNDNI 513 (1247)
Q Consensus 481 ~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~ 513 (1247)
...... ...+++|+.|+++.+....
T Consensus 159 --------~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 159 --------ALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp --------CBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred --------CCCHHHHHCCCCCCCCEEECCCCCCCC
T ss_conf --------529788624466632179888982565
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=301.22 Aligned_cols=149 Identities=18% Similarity=0.245 Sum_probs=69.8
Q ss_pred EEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEECC
Q ss_conf 99935899833434653443199987499915997755893-532677886998258677896--122588878688752
Q 000869 348 FLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSLPP-SIDHLLNLQTLCLDQCILGDV--AIIGKLKNLEILSFS 424 (1247)
Q Consensus 348 ~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~~--~~~~~L~~L~~L~L~ 424 (1247)
.++++++.+. .+|..+ .+++++|++++|.+..+|. .|.++++|++|++++|.+..+ ..++++++|++|+++
T Consensus 8 ~~~cs~~~L~---~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 8 VADCSHLKLT---QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp EEECCSSCCS---SCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred EEECCCCCCC---CCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 4487779805---264124---8887688898997787597887178767588788996485697787406676888899
Q ss_pred CCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 788976753-2138887868834277778643912322999987999024744433499995333456200179999869
Q 000869 425 GSGIVKLPE-ELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWEDEGPNSETINSRLDELMHLPRLTT 503 (1247)
Q Consensus 425 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 503 (1247)
+|.+..+|. .|+++++|++|++++| .+..+++..++++.+|++|++++|.+. ...+..+.++++|+.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS-----------STKLGTQVQLENLQE 149 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCS-----------CCCCCSSSCCTTCCE
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCCCEEECCCCCCC-----------CCCCHHHCCCCCCCE
T ss_conf 98567568545303888898989899-668539667415678888989899524-----------667211124556777
Q ss_pred EEEEECCCCCC
Q ss_conf 99761489877
Q 000869 504 LEVHVKNDNIL 514 (1247)
Q Consensus 504 L~l~~~~~~~~ 514 (1247)
|+++.+.....
T Consensus 150 L~L~~n~l~~~ 160 (680)
T 1ziw_A 150 LLLSNNKIQAL 160 (680)
T ss_dssp EECCSSCCCCB
T ss_pred EECCCCCCCCC
T ss_conf 97458843652
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=285.05 Aligned_cols=277 Identities=21% Similarity=0.307 Sum_probs=213.1
Q ss_pred CCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCC--CHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCC
Q ss_conf 9986199999999999622--1399849999907754--999999999999398731-----224479999999999459
Q 000869 1 MGGIGKTTLVKEVARKARK--DKLFDRVVFSEVSQTI--DIKKIQQAIAEKLGLVLQ-----EETESSRASRLHEQLKRE 71 (1247)
Q Consensus 1 ~gGiGKTtla~~~~~~~~~--~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~~~ 71 (1247)
|||+||||||++++++.+. ..++++++|++++... .....++.++..+..... ..........+...+. +
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 233 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-R 233 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-S
T ss_pred CCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-C
T ss_conf 898888899999860756788627881799997885726799999999998655303334788777899999999973-5
Q ss_pred C--EEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCHHHHHH-CCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCH
Q ss_conf 9--1999994999942400001678889999499991598145541-39962398389-998999999999809999983
Q 000869 72 E--KILIILDNIWKRVDLETVGIPFGDDHRGCKLLLTARDRTVLFS-MGSEKNFLVDI-LKEEEAWRLFKLMAGDDVENR 147 (1247)
Q Consensus 72 ~--~~LlvlD~v~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l~~-l~~~ea~~l~~~~~~~~~~~~ 147 (1247)
+ |+|||+||+|+.+++..+ ++|++||||||++.++.. .+....+++++ |+++|++++|...++.. ..
T Consensus 234 ~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~ 304 (1249)
T 3sfz_A 234 KHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KE 304 (1249)
T ss_dssp SSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--ST
T ss_pred CCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HH
T ss_conf 678789999567997788763-------689789999277899876348843798258888788999999865798--13
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 54899999999908984699999999964991699999998539988888----99984579899998808890428999
Q 000869 148 ELKSTATEVAKACKGLPIALTTIARALRNKSMPQWKTTLQQLRMPSLVNF----GGVPAEAYLTIELSYNYLEGEKLKNI 223 (1247)
Q Consensus 148 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~~~~l~~s~~~L~~~~~~~~ 223 (1247)
+..+.+.+|+++|+|+||||.++|++++... ..|..+++.+........ ......+..+|.+||+.|+++ .|.|
T Consensus 305 ~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~ 382 (1249)
T 3sfz_A 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (1249)
T ss_dssp TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHH
T ss_pred HCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHH
T ss_conf 4838899999984997799999999862480-5799999998650443034655644677999999899867999-9999
Q ss_pred HHHCCCCCCC--CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCC--CEECCHHHHHHHHHHHH
Q ss_conf 9851578998--6856799998850764555508878878999999996425010157898--16500999999998640
Q 000869 224 FLLCSLMGNE--IATSDLFKYCMCLGIFKGVDTMENARTNFYALIHQLRDCFLLLGGDNNE--KLSMHDVVRAVAISIAC 299 (1247)
Q Consensus 224 ~~~~a~fp~~--i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~--~~~~H~lvr~~~~~~~~ 299 (1247)
|.+||+||.+ |+...++++|.++ +......+++|.+++|++.....+ .|+||+++|+|+++.+.
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHH
T ss_conf 9972813799751899999885898------------8899999999974463389637981189966899999874506
Q ss_pred CC
Q ss_conf 13
Q 000869 300 RD 301 (1247)
Q Consensus 300 ~e 301 (1247)
++
T Consensus 451 ~~ 452 (1249)
T 3sfz_A 451 SQ 452 (1249)
T ss_dssp GG
T ss_pred HH
T ss_conf 78
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=279.45 Aligned_cols=148 Identities=17% Similarity=0.242 Sum_probs=98.6
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 38982478600123758999844999358998334346534431999874999159977558-93532677886998258
Q 000869 325 YAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQ 403 (1247)
Q Consensus 325 ~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 403 (1247)
++++..++.+..+|..+. +++++|++++|.+. .++...|..+++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCEECCCCCCCCCCCCCC-CCCCEEECCCCCCC---EECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCC
T ss_conf 705746888451898888-87678878889757---73754555776674886887736643977730601068867879
Q ss_pred CCCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCC-CHHHHCCCCCCCEEEEECCCCC
Q ss_conf 677896--12258887868875278897675-32138887868834277778643-9123229999879990247444
Q 000869 404 CILGDV--AIIGKLKNLEILSFSGSGIVKLP-EELGQLTKLRHLDLSNCFKLKVI-APNVISSLIRLEELYMSNCFVE 477 (1247)
Q Consensus 404 ~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~-~~~~l~~L~~L~~L~l~~~~~~ 477 (1247)
|.+..+ ..++++++|++|++++|.+..+| ..++++++|++|++++| .+... .|..++++++|++|++++|.+.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEECHHHHHHCCCCCEEECCCCCCE
T ss_conf 8563048522078653788870377555445113489887798968788-5232530686732677778876688531
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=278.85 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=108.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 38982478600123758999844999358998334346534431999874999159977558-93532677886998258
Q 000869 325 YAISIRDSSIHELLEGLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQTLCLDQ 403 (1247)
Q Consensus 325 ~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 403 (1247)
++++..+..+..+|..+ .+.++.|++++|.+. .+++..|..+++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS---EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCCCCCCCCC-CCCCCEEECCCCCCC---CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCC
T ss_conf 23777779806286778-986758981587347---17966725676652897889835524851136843367644889
Q ss_pred CCCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 677896--1225888786887527889767-5321388878688342777786439123229999879990247444334
Q 000869 404 CILGDV--AIIGKLKNLEILSFSGSGIVKL-PEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLEELYMSNCFVEWED 480 (1247)
Q Consensus 404 ~~l~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 480 (1247)
|.+..+ ..++++++|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+.
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 166 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH--- 166 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC---
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCC---
T ss_conf 8565458655234421537652126766578101223782238988798-341147654568765687776568445---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCC
Q ss_conf 9999533345620017999986--9997614898
Q 000869 481 EGPNSETINSRLDELMHLPRLT--TLEVHVKNDN 512 (1247)
Q Consensus 481 ~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~ 512 (1247)
...+..++.+++|+ .|+++.+...
T Consensus 167 --------~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 167 --------YLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp --------EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred --------CCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf --------54965633221564038966798147
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=277.51 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=70.9
Q ss_pred CCCCEEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCC
Q ss_conf 0343389824786001237--58999844999358998334346534431999874999159977558-93532677886
Q 000869 321 LRKCYAISIRDSSIHELLE--GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNLQ 397 (1247)
Q Consensus 321 ~~~~~~l~l~~~~i~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~ 397 (1247)
.++++++++.++.+..++. ..++++|++|++++|.+. .+++..|..+++|++|++++|.+..+ |..|+++++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC---CCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 887678878889757737545557766748868877366---43977730601068867879856304852207865378
Q ss_pred EEECCCCCCCCC--CCCCCCCCCCEEECCCCCCC--CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC----EE
Q ss_conf 998258677896--12258887868875278897--67532138887868834277778643912322999987----99
Q 000869 398 TLCLDQCILGDV--AIIGKLKNLEILSFSGSGIV--KLPEELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLE----EL 469 (1247)
Q Consensus 398 ~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~----~L 469 (1247)
+|++++|.+..+ ..++++.+|++|++++|.+. .+|..++++++|++|++++| .++.+++..++.+.+|+ .|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCC-CCEECCHHHHHHHHCCCCCCCEE
T ss_conf 88703775554451134898877989687885232530686732677778876688-53105733412120342002430
Q ss_pred EEECCCC
Q ss_conf 9024744
Q 000869 470 YMSNCFV 476 (1247)
Q Consensus 470 ~l~~~~~ 476 (1247)
++.++.+
T Consensus 187 ~l~~n~l 193 (606)
T 3vq2_A 187 DMSLNPI 193 (606)
T ss_dssp ECTTCCC
T ss_pred ECCCCCC
T ss_conf 0468975
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=269.63 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=90.0
Q ss_pred HCCCCEEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCC
Q ss_conf 10343389824786001237--58999844999358998334346534431999874999159977558-9353267788
Q 000869 320 ALRKCYAISIRDSSIHELLE--GLECPQLEFLYMDSNGSSVEINVPEKFFTGMKKLKVVDFCRMQFFSL-PPSIDHLLNL 396 (1247)
Q Consensus 320 ~~~~~~~l~l~~~~i~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L 396 (1247)
...+++++++.+|.+..++. ..++++|++|++++|.+. .+.+..|..+++|++|++++|.+..+ |..|..+++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCC---EECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 8986758981587347179667256766528978898355---2485113684336764488985654586552344215
Q ss_pred CEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC--EEEE
Q ss_conf 6998258677896--12258887868875278897675-32138887868834277778643912322999987--9990
Q 000869 397 QTLCLDQCILGDV--AIIGKLKNLEILSFSGSGIVKLP-EELGQLTKLRHLDLSNCFKLKVIAPNVISSLIRLE--ELYM 471 (1247)
Q Consensus 397 ~~L~L~~~~l~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~--~L~l 471 (1247)
++|++++|.+..+ ..++++++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..++.+.+|+ .|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEEC
T ss_pred CEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHHHHCCCCEEEEEC
T ss_conf 37652126766578101223782238988798341147654568765687776568-44554965633221564038966
Q ss_pred ECCCCC
Q ss_conf 247444
Q 000869 472 SNCFVE 477 (1247)
Q Consensus 472 ~~~~~~ 477 (1247)
.+|.+.
T Consensus 187 ~~n~l~ 192 (606)
T 3t6q_A 187 NGNDIA 192 (606)
T ss_dssp TTCCCC
T ss_pred CCCCCC
T ss_conf 798147
Done!