Query 000870
Match_columns 1246
No_of_seqs 270 out of 440
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 17:18:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000870.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_638-642//hhsearch_pdb/000870hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1w_E SCC1, sister chromatid 1.0 1 1 176.1 3.6 85 1155-1244 27-119 (121)
2 1ew4_A CYAY protein; friedreic 1.0 1 1 19.6 -2.2 12 136-147 54-65 (106)
3 3t3l_A Frataxin, mitochondrial 1.0 1 1 19.2 -2.1 11 136-146 67-77 (129)
4 3cz6_A DNA-binding protein RAP 1.0 1 1 14.3 -2.8 11 741-751 130-140 (168)
5 1nxh_A MTH396 protein; hypothe 1.0 1 1 13.4 -1.7 38 713-752 63-100 (126)
6 1hx1_B BAG-1, BAG-family molec 1.0 1 1 12.2 -2.3 16 758-773 34-49 (114)
7 1qgi_A Protein (chitosanase); 1.0 1 1 11.8 -1.8 43 703-751 151-193 (259)
8 1y6z_A Heat shock protein, put 1.0 1 1 11.1 -3.8 38 64-102 73-112 (263)
9 2m0n_A Putative uncharacterize 1.0 1 1 10.9 0.9 17 734-750 78-94 (112)
10 2gq0_A Chaperone protein HTPG; 1.0 1 1 10.9 -3.2 78 17-102 5-108 (303)
No 1
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=1.00 E-value=1 Score=176.06 Aligned_cols=85 Identities=28% Similarity=0.356 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 855422125563199999999999873048877774012989841--------599989999999866027899400248
Q 000870 1155 PEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQ 1226 (1246)
Q Consensus 1155 aee~q~~Ee~gWSKRT~qML~~LRt~F~~~d~~g~ksLSLseLL~--------G~TRKeAAr~FFElLVLKTrd~IdLeQ 1226 (1246)
.++-+..++.+||+||++|+++||.+|... ++++|++|+. +++||+||++|||+|||||+|||+|+|
T Consensus 27 ~e~v~~~~~~~~Sk~T~~v~~~Lr~~f~~~-----~~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ 101 (121)
T 1w1w_E 27 TEKVRPTPGEVASKAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQ 101 (121)
T ss_dssp -------------CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 331343357766699999999999983778-----870599997530235657888999999999999981489137734
Q ss_pred CCCCCCEEECCCCCCCCC
Q ss_conf 898865251578733125
Q 000870 1227 ARPLDNINIKPGAKLMKA 1244 (1246)
Q Consensus 1227 eEPYGDI~IsaGPkL~ks 1244 (1246)
++|||||.|++||+||..
T Consensus 102 ~epyGdI~I~~~p~L~~~ 119 (121)
T 1w1w_E 102 TEAFGNIKIDAKPALFER 119 (121)
T ss_dssp CSTTCCEEEEECGGGC--
T ss_pred CCCCCCEEEEECCHHHHH
T ss_conf 788885688557066650
No 2
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=1.00 E-value=1 Score=19.60 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCC
Q ss_conf 667668756765
Q 000870 136 VSTREQITLQDT 147 (1246)
Q Consensus 136 qs~~EdITL~D~ 147 (1246)
|.+..+|=|.-.
T Consensus 54 Q~P~~QIWlaSp 65 (106)
T 1ew4_A 54 QEPLHQVWLATK 65 (106)
T ss_dssp ETTTTEEEEECS
T ss_pred CCHHHHHEEECC
T ss_conf 852345337447
No 3
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=1.00 E-value=1 Score=19.19 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 66766875676
Q 000870 136 VSTREQITLQD 146 (1246)
Q Consensus 136 qs~~EdITL~D 146 (1246)
|.+..+|=|.-
T Consensus 67 Q~P~~QIWLAS 77 (129)
T 3t3l_A 67 QTPNKAIWLSS 77 (129)
T ss_dssp ETTTTEEEEEC
T ss_pred CCHHHHHHEEC
T ss_conf 86555763407
No 4
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=1.00 E-value=1 Score=14.26 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=4.1
Q ss_pred HHHHHHHHHCC
Q ss_conf 18899855109
Q 000870 741 TEDIRRIRKKA 751 (1246)
Q Consensus 741 TEDIRRiRKKA 751 (1246)
..+|+|+.||-
T Consensus 130 ~~dikrL~kKH 140 (168)
T 3cz6_A 130 QEQIRKLVKKH 140 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999985
No 5
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=1.00 E-value=1 Score=13.37 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=27.3
Q ss_pred CCHHHHCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 4100010003456401002456663127188998551099
Q 000870 713 QTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAP 752 (1246)
Q Consensus 713 r~~a~KRKv~mDD~MVlhgD~IRQQLtnTEDIRRiRKKAP 752 (1246)
|+..++|||..|=-.-.--|.+- |++.||--.||+|+-
T Consensus 63 k~~cl~~kvd~DLgLcWl~D~~~--LiSk~dAd~ir~kv~ 100 (126)
T 1nxh_A 63 RPRCIREKLHSDLQLCWLVDVME--IISVDDAEALKDEIT 100 (126)
T ss_dssp HHHHHHHHHHHHTTHHHHTTTSC--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHH--HCCHHHHHHHHHHHH
T ss_conf 54167888605523069999998--724747999999999
No 6
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=1.00 E-value=1 Score=12.16 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=6.8
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 0000000111112456
Q 000870 758 ILMIQMQFLEDDIFNE 773 (1246)
Q Consensus 758 I~mIq~q~LedeIF~e 773 (1246)
|.=||||||+.+.+.|
T Consensus 34 l~~iekGFL~kel~~e 49 (114)
T 1hx1_B 34 LTGIQQGFLPKDLQAE 49 (114)
T ss_dssp HHHHHHSCSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHH
T ss_conf 9999870102076787
No 7
>1qgi_A Protein (chitosanase); hydrolase, chitosan degradation; HET: GCS NAG; 1.60A {Bacillus circulans} SCOP: d.2.1.7 PDB: 2d05_A
Probab=1.00 E-value=1 Score=11.82 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 2211000124410001000345640100245666312718899855109
Q 000870 703 ASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKA 751 (1246)
Q Consensus 703 ~smKr~R~~sr~~a~KRKv~mDD~MVlhgD~IRQQLtnTEDIRRiRKKA 751 (1246)
++++++|..--++||-+-++. |++|.||..--. +-+.-|||+|
T Consensus 151 PAv~~A~~~Gl~sALtlgq~~-Da~v~HG~~~~~-----~s~~gi~~ra 193 (259)
T 1qgi_A 151 YSVEQARQRGFTSAVTIGSFV-DTALNQGATGGS-----DTLQGLLARS 193 (259)
T ss_dssp HHHHHHHHTTCCCHHHHHHHH-HHHHHHCSSSST-----TSHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCCHHHHH-HHHHHCCCCCCC-----HHHHHHHHHH
T ss_conf 999989866886632002334-179760898872-----2579999986
No 8
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=1.00 E-value=1 Score=11.08 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=0.0
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf 999822203688879999999998630256--689999888
Q 000870 64 VRIYSRKVNYLFDDCSEALLKIKQAFRSTA--VDLPPEEST 102 (1246)
Q Consensus 64 VRIYSrKv~YLLsDcn~aL~KIk~aFRs~~--VDLP~e~~~ 102 (1246)
+++|.|+| |+.++|.+++..--++.|... .|||...++
T Consensus 73 ikLYvrrV-fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSR 112 (263)
T 1y6z_A 73 IRLYVKRV-FINDKFSESIPRWLTFLRGIVDSENLPLNVGR 112 (263)
T ss_dssp EEEEETTE-EEESCGGGGSCGGGTTCEEEEEECC-------
T ss_pred EEEEEEEE-EEECCHHHHCHHHHHHHEECCCCCCCCCCCCH
T ss_conf 06898521-74166666665799877001430567874154
No 9
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=1.00 E-value=1 Score=10.95 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHCCHHHHHHHHHC
Q ss_conf 66631271889985510
Q 000870 734 IRQQLTNTEDIRRIRKK 750 (1246)
Q Consensus 734 IRQQLtnTEDIRRiRKK 750 (1246)
|-+++-+-|||.|+|.+
T Consensus 78 VT~e~P~peDI~RV~ar 94 (112)
T 2m0n_A 78 VTKDEPTAQDISRVASR 94 (112)
T ss_dssp TTTCCCCHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHH
T ss_conf 83259698999999999
No 10
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=1.00 E-value=1 Score=10.90 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCC-CCCH---HHHHHCC--------------------CCCEEEEEECCHH
Q ss_conf 67774206777501220555488787740899-8632---4443101--------------------3646999822203
Q 000870 17 IWIAAHLERKLRKNQVADTDIGVSVDSILFPD-VPIA---LRLSSHL--------------------LLGVVRIYSRKVN 72 (1246)
Q Consensus 17 IWLAAtl~KKLsKkqIl~vDI~ksceeIl~P~-vPLA---LRLSGqL--------------------LlGVVRIYSrKv~ 72 (1246)
|| .-++++|..-+...-...+...- .|++ ++.-|.+ ..+-+++|.|+|
T Consensus 5 lW-------~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~~~~~~ikLYvrrV- 76 (303)
T 2gq0_A 5 LW-------TRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRV- 76 (303)
T ss_dssp GG-------GSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTSTTCCCSEEEEETTE-
T ss_pred CC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEECE-
T ss_conf 75-------7893308999999999987288527504688503665515589994698870033230258828997023-
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf 688879999999998630256--689999888
Q 000870 73 YLFDDCSEALLKIKQAFRSTA--VDLPPEEST 102 (1246)
Q Consensus 73 YLLsDcn~aL~KIk~aFRs~~--VDLP~e~~~ 102 (1246)
|+.++|.+++..--++.|... .|||...++
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSR 108 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSR 108 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCH
T ss_pred EEECCHHHHCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 85266455564888776101552567864366
Done!