Query 000870
Match_columns 1246
No_of_seqs 270 out of 440
Neff 3.0
Searched_HMMs 13730
Date Tue Mar 26 17:25:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000870.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_638-642//hhsearch_scop/000870hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w1we_ a.4.5.57 (E:) Sister c 99.8 3.4E-21 2.5E-25 141.8 3.6 71 1168-1243 1-79 (79)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 32.5 9.8 0.00071 13.5 1.8 47 1168-1221 3-51 (54)
3 d1jhfa1 a.4.5.2 (A:2-72) LexA 27.0 12 0.00089 13.0 2.9 68 1164-1236 1-68 (71)
4 d1ekga_ d.82.2.1 (A:) C-termin 24.3 2.3 0.00017 17.3 -2.6 11 136-146 59-69 (119)
5 d1ew4a_ d.82.2.1 (A:) CyaY {Es 23.8 2.9 0.00021 16.7 -2.2 10 137-146 55-64 (106)
6 d2vxfa1 b.38.1.5 (A:6-85) LSM1 8.6 36 0.0026 10.1 0.6 36 644-683 26-61 (80)
7 d2ob5a1 c.133.1.1 (A:1-147) Hy 6.4 51 0.0037 9.2 2.1 30 1209-1239 116-145 (147)
8 d1ogda_ c.133.1.1 (A:) Ribose 6.2 54 0.0039 9.1 2.4 33 1208-1241 99-131 (131)
9 d1gh9a_ g.41.6.1 (A:) Hypothet 5.6 60 0.0044 8.8 -0.0 43 627-670 27-69 (71)
10 d1d5ya1 a.4.1.8 (A:3-56) Rob t 5.3 66 0.0048 8.6 1.9 50 1167-1223 2-53 (54)
No 1
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.81 E-value=3.4e-21 Score=141.82 Aligned_cols=71 Identities=30% Similarity=0.423 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEECCCC
Q ss_conf 99999999999873048877774012989841--------5999899999998660278994002488988652515787
Q 000870 1168 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1239 (1246)
Q Consensus 1168 KRT~qML~~LRt~F~~~d~~g~ksLSLseLL~--------G~TRKeAAr~FFElLVLKTrd~IdLeQeEPYGDI~IsaGP 1239 (1246)
|+|++|++.||.+|... +.+.|++++. ++|||+||++||++|||+|++||+|+|++|||||.|++||
T Consensus 1 K~t~q~a~~Lr~el~~~-----~~v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~p 75 (79)
T d1w1we_ 1 KAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP 75 (79)
T ss_dssp CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEECG
T ss_pred CHHHHHHHHHHHHHCCC-----CCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC
T ss_conf 94899999999997556-----7421345434341145457789999999999999713786788757876756883076
Q ss_pred CCCC
Q ss_conf 3312
Q 000870 1240 KLMK 1243 (1246)
Q Consensus 1240 kL~k 1243 (1246)
+||+
T Consensus 76 ~l~~ 79 (79)
T d1w1we_ 76 ALFE 79 (79)
T ss_dssp GGC-
T ss_pred CCCC
T ss_conf 4449
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=32.50 E-value=9.8 Score=13.55 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC--CCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999873048877774012989841--5999899999998660278994
Q 000870 1168 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--GKTRKEASRMFFETLVLKTKDY 1221 (1246)
Q Consensus 1168 KRT~qML~~LRt~F~~~d~~g~ksLSLseLL~--G~TRKeAAr~FFElLVLKTrd~ 1221 (1246)
.+..++..|+..++.. .+++.+|++ |.+++...+.|-+.+...=.+|
T Consensus 3 ~~i~~v~~yI~~~~~~-------~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Y 51 (54)
T d1bl0a1 3 ITIHSILDWIEDNLES-------PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQY 51 (54)
T ss_dssp HHHHHHHHHHHTTTTS-------CCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHCCCC-------CCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999865479-------999999999989399999999999999199999
No 3
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=12 Score=12.98 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEC
Q ss_conf 5631999999999998730488777740129898415999899999998660278994002488988652515
Q 000870 1164 SGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIK 1236 (1246)
Q Consensus 1164 ~gWSKRT~qML~~LRt~F~~~d~~g~ksLSLseLL~G~TRKeAAr~FFElLVLKTrd~IdLeQeEPYGDI~Is 1236 (1246)
+.+++|-++++.+++..+...+. ..++.+|+....=+..+.....+-.|..+|+|.-....+= .|.|.
T Consensus 1 ~~LT~rQ~~vL~~I~~~~~~~G~----~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~R-~i~i~ 68 (71)
T d1jhfa1 1 KALTARQQEVFDLIRDHISQTGM----PPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASR-GIRLL 68 (71)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSS----CCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSS-CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCCC-EEEEC
T ss_conf 98799999999999999998288----9889999977299999999999999999759306899985-16732
No 4
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.26 E-value=2.3 Score=17.32 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 66766875676
Q 000870 136 VSTREQITLQD 146 (1246)
Q Consensus 136 qs~~EdITL~D 146 (1246)
|.+..+|=|.-
T Consensus 59 Q~p~~QIWlAS 69 (119)
T d1ekga_ 59 QTPNKQIWLSS 69 (119)
T ss_dssp EGGGTEEEEEE
T ss_pred CCCCEEEEEEC
T ss_conf 89730478976
No 5
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=23.84 E-value=2.9 Score=16.69 Aligned_cols=10 Identities=20% Similarity=0.156 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q ss_conf 6766875676
Q 000870 137 STREQITLQD 146 (1246)
Q Consensus 137 s~~EdITL~D 146 (1246)
.+..+|=|.-
T Consensus 55 ~p~~QIWlaS 64 (106)
T d1ew4a_ 55 EPLHQVWLAT 64 (106)
T ss_dssp TTTTEEEEEC
T ss_pred CCCCEEEEEC
T ss_conf 8601156887
No 6
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=8.58 E-value=36 Score=10.14 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2234331023454332354555435789999711245454
Q 000870 644 YTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSIL 683 (1246)
Q Consensus 644 ~teSt~t~qS~~s~es~g~~~skRt~esiPdDdDlLsSIL 683 (1246)
..+||++|+. |++|| .-++++...||--+.+...|+
T Consensus 26 ~~~sTi~L~n---VrsfG-TEgR~~~~~ipp~~~vy~~Iv 61 (80)
T d2vxfa1 26 TENSTVALAK---VRSFG-TEDRPTDRPIAPRDETFEYII 61 (80)
T ss_dssp TTTTEEEEEE---EEECC-STTSCCSSCCCCCCCCEEEEE
T ss_pred CCCCEEEEEE---EEEEE-CCCCCCCCCCCCCCCCEEEEE
T ss_conf 6347899143---15862-578988885499881166899
No 7
>d2ob5a1 c.133.1.1 (A:1-147) Hypothetical protein Atu2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.43 E-value=51 Score=9.25 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCCEEECCCC
Q ss_conf 9998660278994002488988652515787
Q 000870 1209 MFFETLVLKTKDYIHVEQARPLDNINIKPGA 1239 (1246)
Q Consensus 1209 ~FFElLVLKTrd~IdLeQeEPYGDI~IsaGP 1239 (1246)
-||+.. =+.+-.|.---..||++|++++|-
T Consensus 116 ~Fy~~a-k~a~aVVrTGE~~pYaNiIL~~GV 145 (147)
T d2ob5a1 116 AFYEKA-KQAYCVITTGETRFYGCFLLTKGV 145 (147)
T ss_dssp HHHHHH-HTSSEEEECSCCSTTCCEEEEBCC
T ss_pred HHHHHH-CCCCEEEECCCCCCEEEEEEECCC
T ss_conf 999997-168799988999753479996687
No 8
>d1ogda_ c.133.1.1 (A:) Ribose transport protein RbsD {Bacillus subtilis [TaxId: 1423]}
Probab=6.20 E-value=54 Score=9.13 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCCEEECCCCCC
Q ss_conf 9999866027899400248898865251578733
Q 000870 1208 RMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1241 (1246)
Q Consensus 1208 r~FFElLVLKTrd~IdLeQeEPYGDI~IsaGPkL 1241 (1246)
.-||+. +=+.+-.|.-.-..|||+|++++|-.|
T Consensus 99 ~~Fy~~-ak~a~aVV~TGE~~~Y~NiIL~kGViF 131 (131)
T d1ogda_ 99 EEFKLL-TKDAKAVIRTGEFTPYANCILQAGVLF 131 (131)
T ss_dssp HHHHHH-GGGCSEEEECCCCSTTCCEEEEECCCC
T ss_pred HHHHHH-HHCCEEEEECCCCCCEEEEEEECCCCC
T ss_conf 999999-745709998689975447999748439
No 9
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.61 E-value=60 Score=8.84 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89866676455566543223433102345433235455543578
Q 000870 627 SGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSE 670 (1246)
Q Consensus 627 ~~~~~ag~~~isgkKRs~teSt~t~qS~~s~es~g~~~skRt~e 670 (1246)
|-+-+....-|-++--+++|.+++||-|. .|-||..+-||..+
T Consensus 27 GkT~nVK~RRIfk~a~~~eeAse~Vq~mQ-eEiYG~~~F~~~s~ 69 (71)
T d1gh9a_ 27 GRTVNVKDRRIFGRADDFEEASELVRKLQ-EEKYGSCHFTNPSK 69 (71)
T ss_dssp TEEEECCSSSCBSCCSSHHHHHHHHHHHS-SCCCSCTTSSCTTS
T ss_pred CCEEEHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCCCCC
T ss_conf 65200446657766333888999999999-98756664378322
No 10
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=66 Score=8.59 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC--CCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 199999999999873048877774012989841--599989999999866027899400
Q 000870 1167 SSRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--GKTRKEASRMFFETLVLKTKDYIH 1223 (1246)
Q Consensus 1167 SKRT~qML~~LRt~F~~~d~~g~ksLSLseLL~--G~TRKeAAr~FFElLVLKTrd~Id 1223 (1246)
+....++..|++.++.++ +++.+|++ +.++..-.+.|-......-..||.
T Consensus 2 ~~ii~~i~~yi~~~~~~~-------itl~~lA~~~~~S~~~l~r~Fk~~~g~tp~~yir 53 (54)
T d1d5ya1 2 AGIIRDLLIWLEGHLDQP-------LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIR 53 (54)
T ss_dssp HHHHHHHHHHHHTTSSSS-------CCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCC-------CCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 799999999998744899-------9999999998929999999999999909999971
Done!