BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000872
(1245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 56/240 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGE 61
L+G GSGK+T+ + D G++ +GHD+ E+ R + ++H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
TV +A+ AR + + SR + + E D
Sbjct: 431 DTVANNIAY-ARTE----------QYSREQ------------------IEEAARMAYAMD 461
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+I K +D DTV+G+ + +SGGQR+R+ L+ + L +DE ++ LD+ +
Sbjct: 462 FINK---MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 182 HIVNSLGQFNHILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQGP----LEH 232
I +L + N T+L+ S ++ A D+I++V DG IV +G LEH
Sbjct: 518 AIQAALDELQK--NRTSLVIAHRLSTIEKA-------DEIVVVEDGVIVERGTHNDLLEH 568
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 644 RRRNSSSQSRETTIETDQPKNRGM-VLPFEPFSLTFDEITYSV---DMPQEMKRRGVHDD 699
+R ++ Q+ T ++++Q K+ G V+ + F +T++ D+P
Sbjct: 309 QRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA---------- 358
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQE 757
L ++ G AL+G +GSGK+T+ ++ TR Y G I + G+ +
Sbjct: 359 ----LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGEILMDGHDLREY 410
Query: 758 TFTRISGYCE--QNDIHSPYVTVYESLLYSAWLRLSSE-VNSKTRXXXXXXXXXXXXXNP 814
T + ++H TV ++ Y+ + S E + R N
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFI-----NK 465
Query: 815 LRQALVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ L + G NG LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 42/227 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGE 61
L+G GSGK+T+ + D G + +GHD+ E+ R + ++H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
TV +A+ AR + E SR + + E D
Sbjct: 431 DTVANNIAY-ARTE----------EYSREQ------------------IEEAARMAYAMD 461
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+I K +D DT++G+ + +SGGQR+R+ L+ + L +DE ++ LD+ +
Sbjct: 462 FINK---MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I +L + N T+L+ + D+I++V DG IV +G
Sbjct: 518 AIQAALDELQK--NRTSLV--IAHRLSTIEQADEIVVVEDGIIVERG 560
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQETFTRISGYCE--QN 769
G AL+G +GSGK+T+ ++ TR Y G+I + G+ + T +
Sbjct: 369 GKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 770 DIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNG-- 827
++H TV ++ Y+ + E + + N + L + G NG
Sbjct: 425 NVHLFNDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP GSGK+TL+ +AG + SGK+ ++ D+ E P+ R + Q+ M
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV + +AF +EL + P +ID ++ V + ++ Y
Sbjct: 91 TVYKNIAFP-------------LELRK-------APREEIDKKVREVAKMLHIDKLLNRY 130
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+ +SGGQ++RV LV L +DE + LD+
Sbjct: 131 PWQ-------------------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 242
+ L + L G + + E + D I ++ +G+I+ G + V +
Sbjct: 172 VRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV--------Y 222
Query: 243 KCPKRKGIADFL 254
PK K + FL
Sbjct: 223 YKPKYKFVGGFL 234
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQETF 759
LN ++ + G AL+G +GSGK+TL+ +AG + T G Y PK++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV- 77
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLS--SEVNSKTRXXXXXXXXXXXXXNPLRQ 817
G QN P++TVY+++ + LR + E++ K R + +
Sbjct: 78 ----GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--------IDK 125
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L P LS Q++R+ IA LV P ++ +DEP S LD
Sbjct: 126 LLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L V+ F G + ++G GSGKTTL+ +LAG G I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA---AAGEIFLDGSPADPFLLRKN 82
Query: 763 SGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
GY QN TV E + +S + E + R LVG
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVL-------------ELVG 129
Query: 822 LPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDT 876
L G+ LS Q++RL IA L + + +DEP S LD +
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 877 GRTVVCTIHQ 886
G+ ++ H+
Sbjct: 190 GKGIILVTHE 199
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 97/237 (40%), Gaps = 48/237 (20%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH-DIHIGE 61
+++G GSGKTTL+ LAG L A+G++ +G F+ ++ Y+ Q+ I
Sbjct: 41 VVVGKNGSGKTTLLKILAG----LLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG 96
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
TV E +AFS G+ E+ +R
Sbjct: 97 ATVEEDVAFSLEIMGLDES-----EMRKR------------------------------- 120
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
I KVL+L + D + +SGGQ++R+ ML L +DE + LD +
Sbjct: 121 -IKKVLELVGLSGLAAADPL--NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH-VEQFF 237
I L + G L++ E + D I+ +S+G I + G E VE+ F
Sbjct: 178 EIFQVLESLKNEGKGIILVT---HELEYLDDMDFILHISNGTIDFCGSWEEFVEREF 231
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 44/228 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIG 60
L+G GSGK+T+ D SG + +GHD+ ++ +R A +SQ ++H+
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLF 429
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
T+ +A++A +G +R + + + +R+ A + I +
Sbjct: 430 NDTIANNIAYAA--EGEYTR-EQIEQAARQAHAMEFIEN--------------------- 465
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
+ DTV+G E +SGGQR+RV L+ A L +DE ++ LD+ +
Sbjct: 466 --------MPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 181 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I +L + N T L+ + D+I++V +G+I+ +G
Sbjct: 517 RAIQAALDELQK--NKTVLV--IAHRLSTIEQADEILVVDEGEIIERG 560
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 761
L+ VS + G AL+G +GSGK+T+ ++ TR Y +G+I + G+ T
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 762 ISGY---CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
+ + QN +H T+ ++ Y+A E + + Q
Sbjct: 415 LRRHFALVSQN-VHLFNDTIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 819 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L + G NG LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 861
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 862 XXXXXXXXXXXXXDTGRTVVCTIHQPS 888
GRTV+ H+ S
Sbjct: 176 SEHVIMRNMHKIC-KGRTVIIIAHRLS 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 187
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 861
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 862 XXXXXXXXXXXXXDTGRTVVCTIHQPS 888
GRTV+ H+ S
Sbjct: 174 SEHVIMRNMHKIC-KGRTVIIIAHRLS 199
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 185
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 186 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 861
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 862 XXXXXXXXXXXXXDTGRTVVCTIHQPS 888
GRTV+ H+ S
Sbjct: 180 SEHVIMRNMHKIC-KGRTVIIIAHRLS 205
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 191
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY----ISQHD 56
+TL++GP GSGK+TL+ + G L + G+V + D+ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ EMTV E L C G + + K IP + ++ KA
Sbjct: 92 QPLKEMTVLENLLIGEICPGESPLNSLFYK--------KWIPKEE-EMVEKAF------- 135
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 136 -----KILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 177 SSTTFHIVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 186 PGLAHDI------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG----RKTRGYITGNITISGYPKNQ--- 756
L+GVS + G +T ++G GSGK+TL++V+ G + R Y + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 757 ---ETFTRISGYCEQNDIHS-------PYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXX 806
TF E + + P + SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF-- 140
Query: 807 XXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
L+ + + LS Q K + I L+ NP +I MDEP +G+
Sbjct: 141 --------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 38/207 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G GSGK+TL ++ R YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 861
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 862 XXXXXXXXXXXXXDTGRTVVCTIHQPS 888
GRTV+ H+ S
Sbjct: 176 SEHVIMRNMHKIC-KGRTVIIIAHRLS 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 187
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 221
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 756
K+ ++GVS + G AL+G +G GKTT + +LAG + T G I ++ ++ P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR 816
R G QN P++TV+E++ + R S+ + R +
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL------ID 124
Query: 817 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L P LS Q++R+ +A LV P ++ DEP S LD
Sbjct: 125 NLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 115/295 (38%), Gaps = 52/295 (17%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEM 62
LLGP G GKTT +L LAG + SG++ ++ +++ P+ R + Q+ M
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHM 90
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV E +AF R + +S+ E +++ A ++ D
Sbjct: 91 TVFENIAFPLRAR----------RISKDEVEKRVVEIA---------------RKLLIDN 125
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
+L D +SGGQ++RV LV L DE + LD++
Sbjct: 126 LL--------------DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI 171
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV----EQFFI 238
+ + L G + + E + I + + G++V G + V + F+
Sbjct: 172 MRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230
Query: 239 SMGFKCPKRKGIADFLQEVTSRK---DQEQYWVRNDEPYRFVTVKEFVHAFQSFH 290
+ P + DF V +++ ++ ++ EP V +KE V + H
Sbjct: 231 ASFIGNPPTNFLRDFSVSVENKQTILKRDDVIIKLPEPVD-VKLKEVVVGIRPEH 284
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 42/236 (17%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI 57
+T L+GP GSGK+T++ L D ASG ++ +GHD+ + P + +SQ I
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ ++ E +A+ A D V + + R + AN
Sbjct: 460 -LFSCSIAENIAYGA--------------------------DDPSSVTAEEIQRVAEVAN 492
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+ + + +TVVG++ + +SGGQ++R+ L+ L +DE ++ LD+
Sbjct: 493 AVA----FIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDA 547
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + +L + +++G ++ + + N + + ++ G+I G E +
Sbjct: 548 ENEYLVQEAL---DRLMDGRTVLVIAHHLSTIKNA-NMVAVLDQGKITEYGKHEEL 599
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 15/182 (8%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQET----FTRISGYCE 767
G +TAL+G +GSGK+T++ +L R Y +G I++ G+ Q ++I +
Sbjct: 401 GSVTALVGPSGSGKSTVLSLL----LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 456
Query: 768 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVN 826
+ + S ++ E++ Y A S R P +VG GV
Sbjct: 457 EPILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 886
LS Q++R+ IA L+ NP I+ +DE TS LD D GRTV+ H
Sbjct: 515 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHH 572
Query: 887 PS 888
S
Sbjct: 573 LS 574
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 42/236 (17%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDI 57
+T L+GP GSGK+T++ L D ASG ++ +GHD+ + P + +SQ I
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+ ++ E +A+ A D V + + R + AN
Sbjct: 429 -LFSCSIAENIAYGA--------------------------DDPSSVTAEEIQRVAEVAN 461
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+ + + +TVVG++ + +SGGQ++R+ L+ L +DE ++ LD+
Sbjct: 462 AVA----FIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + +L + +++G ++ + + N + + ++ G+I G E +
Sbjct: 517 ENEYLVQEAL---DRLMDGRTVLVIAHRLSTIKNA-NMVAVLDQGKITEYGKHEEL 568
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQET----FTRISGYCE 767
G +TAL+G +GSGK+T++ +L R Y +G I++ G+ Q ++I +
Sbjct: 370 GSVTALVGPSGSGKSTVLSLL----LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Query: 768 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVN 826
+ + S ++ E++ Y A S R P +VG GV
Sbjct: 426 EPILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 827 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 886
LS Q++R+ IA L+ NP I+ +DE TS LD D GRTV+ H+
Sbjct: 484 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541
Query: 887 PS 888
S
Sbjct: 542 LS 543
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 31/170 (18%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETF 759
+LN +S + PG + ++G +G GKTTL+ LAG + +G I++SG + KN
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 760 TRIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQ 817
R GY Q + P++TVY ++ Y N K R +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRI---------E 120
Query: 818 ALVGLPGVNGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLD 859
A++ L G++ L+ L+ +A L +P +I +DEP S LD
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 3 LLLGPPGSGKTTLMLALAG--KLDS-SLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHI 59
++G G GKTTL+ LAG + DS + SGK ++ + + V +R Y+ Q +
Sbjct: 34 FIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS-KNTNLPVRERRLGYLVQEGVLF 92
Query: 60 GEMTVRETLAF-----SARCQGVGSRYDMLVELS 88
+TV +A+ R R + ++EL+
Sbjct: 93 PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT 126
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 861
+VG G GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 862 XXXXXXXXXXXXXDTGRTVVCTIHQPS 888
GRTV+ H+ S
Sbjct: 180 SEHVIMRNMHKIC-KGRTVIIIAHRLS 205
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L D+ ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM---HKI 191
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 185
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 186 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 753
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 754 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 801
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 802 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 193
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 191
Query: 194 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK---NQETF 759
+L G++ + G AL+G +G GK+T + ++ ++ + G ++I G N
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QA 818
I G Q + T+ E++ Y E+ + P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQFDT 518
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGR 878
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GR 576
Query: 879 TVVCTIHQPSI----DIFEAFDAGI 899
T + H+ S D+ FD G+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 73 RCQ-GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 131
R Q G+ S+ +L + S E A D V + +VR +EAN I +I + D
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPD--- 1159
Query: 132 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 191
+T VGD+ + +SGGQ++R+ LV H L +DE ++ LD+ + + +L +
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 192 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
G I + + N D I+++ +G++ G + +
Sbjct: 1219 E---GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQL 1256
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 103 DVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLV 160
DV M + + +EAN D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 161 GPAHALFMDEISTGLDSST 179
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK---NQETF 759
+L G++ + G AL+G +G GK+T + ++ ++ + G ++I G N
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QA 818
I G Q + T+ E++ Y E+ + P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQFDT 518
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGR 878
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GR 576
Query: 879 TVVCTIHQPSI----DIFEAFDAGI 899
T + H+ S D+ FD G+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 73 RCQ-GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 131
R Q G+ S+ +L + S E A D V + +VR +EAN I +I + D
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPD--- 1159
Query: 132 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 191
+T VGD+ + +SGGQ++R+ LV H L +DE ++ LD+ + + +L +
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 192 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
G I + + N D I+++ +G++ G + +
Sbjct: 1219 E---GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQL 1256
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 103 DVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLV 160
DV M + + +EAN D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 161 GPAHALFMDEISTGLDSST 179
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY----ISQHD 56
+TL++GP GSGK+TL+ + G L + G+V + D+ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ EMTV E L ++ E++ E +F K + + +E
Sbjct: 92 QPLKEMTVLENL--------------LIGEINPGESPLN-------SLFYKKWIPKEEEM 130
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 177 SSTTFHIVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 186 PGLAHDI------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-----------------YIT 744
L+GVS + G +T ++G GSGK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 745 GNITISGYPKNQETFTRISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 802
G + P+ + T + E N SP SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 803 XXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
L+ + + LS Q K + I L+ NP +I MDEP +G+
Sbjct: 139 EF----------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAY----ISQHD 56
+TL++GP GSGK+TL+ + G L + G+V + D+ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ EMTV E L ++ E++ E +F K + + +E
Sbjct: 92 QPLKEMTVLENL--------------LIGEINPGESPLN-------SLFYKKWIPKEEEM 130
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
IL+ L L D G+ +SGGQ K V G L+ + MD+ G+
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVA 185
Query: 177 SSTTFHIVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 186 PGLAHDI------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-----------------YIT 744
L+GVS + G +T ++G GSGK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 745 GNITISGYPKNQETFTRISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 802
G + P+ + T + E N SP SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWIPKEEEMVEKA---- 134
Query: 803 XXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
L+ + + LS Q K + I L+ NP +I MD+P +G+
Sbjct: 135 ------FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
+N ++ + G L+G +G GKTT + ++AG T G I G+ ++ P +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
+ Q+ P++TVYE++ + ++ E++ + R + +
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--------IEEL 135
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L P LS QR+R+ +A +V P ++ MDEP S LD
Sbjct: 136 LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 44/227 (19%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGE 61
+LLGP G GKTT + +AG + + G++ + D+ P+ R + + Q
Sbjct: 42 VLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 98
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
MTV E +AF + K P +ID ++ Q ++
Sbjct: 99 MTVYENIAFPLKI--------------------KKFPKDEIDKRVRWAAELLQIEELLNR 138
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
Y + +SGGQR+RV +V L MDE + LD+
Sbjct: 139 YPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 179
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ + + L T I + E + D I +++ GQ++ G
Sbjct: 180 AMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 760
+N ++ + G L+G +G GKTT + ++AG T G I G+ ++ P +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
+ Q+ P++TVYE++ + ++ E++ + R + +
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--------IEEL 134
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
L P LS QR+R+ +A +V P ++ MDEP S LD
Sbjct: 135 LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 44/227 (19%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGE 61
+LLGP G GKTT + +AG + + G++ + D+ P+ R + + Q
Sbjct: 41 VLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
MTV E +AF + K P +ID ++ Q ++
Sbjct: 98 MTVYENIAFPLKI--------------------KKFPKDEIDKRVRWAAELLQIEELLNR 137
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
Y + +SGGQR+RV +V L MDE + LD+
Sbjct: 138 YPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 178
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ + + L T I + E + D I +++ GQ++ G
Sbjct: 179 AMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 55/253 (21%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQR-TAAYISQHDIHIGE 61
++LGP G+GKT + +AG + SG++ +G D+ + P++ A++ Q+
Sbjct: 30 VILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
M V++ L F R + + K K + D D+ ++ ++ + N +T
Sbjct: 87 MNVKKNLEFGMRMKKI--------------KDPKRVLDTARDLKIEHLL----DRNPLT- 127
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
+SGG+++RV LV L +DE + LD T
Sbjct: 128 -----------------------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMG 241
+ L H N ++ + E + D I +V DG+++ G E +
Sbjct: 165 NAREMLSVL-HKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI-------- 215
Query: 242 FKCPKRKGIADFL 254
F+ P +A F+
Sbjct: 216 FEKPVEGRVASFV 228
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG----RKTRGYITGNITISGYPKNQETF 759
L+ +S G ++G TG+GKT ++++AG R + G P+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 819
+ QN P++ V ++L + ++ + NPL
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---- 126
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS +++R+ +A LV NP I+ +DEP S LD
Sbjct: 127 -------TLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGYPKNQETFT 760
+ GVS R G + L+G +GSGKTT++ ++AG R T+G + G ++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 761 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
R G QN ++TVY+++ + + E++++ R
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR----- 141
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
P + LS Q++R+ +A L P ++ DEP + +D
Sbjct: 142 ---FP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 44/234 (18%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHI 59
M LLGP GSGKTT++ +AG L+ K G V G + + PQ R + Q+
Sbjct: 43 MVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
MTV + ++F R K +P ++D A VRE
Sbjct: 100 QHMTVYDNVSFGLR--------------------EKRVPKDEMD----ARVRE------- 128
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
+L+ + L+ A+ + +SGGQ++RV L L DE +D+
Sbjct: 129 ---LLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
+ + Q H G + + E + D ++++ +G + G E V
Sbjct: 181 RRELRTFVRQV-HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 144 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 203
+SGGQ++RV L L DE ++ LD +TT I+ L N L G ++ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLIT 198
Query: 204 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQ 263
V + D + ++S+G++ +EQ +S F PK F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTLHLDIP 250
Query: 264 EQYWVR-NDEPY 274
E Y R EP+
Sbjct: 251 EDYQERLQAEPF 262
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 13/198 (6%)
Query: 696 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP 753
+DD +L +S +P + A G +G GK+T+ +L R Y G ITI G P
Sbjct: 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPTAGEITIDGQP 65
Query: 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXX 810
+ E + G+ Q D T+ E+L Y + E +
Sbjct: 66 IDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 811 XXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXX 870
+ L VG GV +S QR+RL IA + NP I+ +DE T+ LD
Sbjct: 125 MPDQLNTE-VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 871 XXXXDTGRTVVCTIHQPS 888
GRT + H+ S
Sbjct: 183 DSLM-KGRTTLVIAHRLS 199
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 104 VFMKAVVRE----GQEANVITDYILKVLDLDVCA----------DTVVGDEMLRGISGGQ 149
M +RE G E + + + +VLDL +T VG+ ++ ISGGQ
Sbjct: 86 AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQ 144
Query: 150 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEV 209
R+R+ + L +DE + LDS + + +L + ++ G + + +
Sbjct: 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL---DSLMKGRTTLVIAHRLSTI 201
Query: 210 YNLFDDIILVSDGQIVYQG 228
+ D I + GQI G
Sbjct: 202 VDA-DKIYFIEKGQITGSG 219
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGY-------PKNQETFTR 761
+ G L+G +G GKTT + ++AG +RG I G+ ++ PK+++
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 762 ISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQAL 819
Y P++TVY+++ + LR E++ + R R+
Sbjct: 87 FQSYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-- 139
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS QR+R+ + +V P + MDEP S LD
Sbjct: 140 --------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 91/239 (38%), Gaps = 52/239 (21%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE------FVP--QRTAAYISQ 54
+LLGP G GKTT + +AG + S G++ Y G + FVP R A + Q
Sbjct: 33 ILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 55 HDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQ 114
MTV + +AF + + V P +ID VRE
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKV--------------------PRQEID----QRVREVA 124
Query: 115 EANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 174
E +T+ + + R +SGGQR+RV G +V MDE +
Sbjct: 125 ELLGLTELL---------------NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 175 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
LD+ + L + L G I + E + D I +++ G + G + V
Sbjct: 170 LDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 40/229 (17%)
Query: 646 RNSSSQSRETTIETDQPK----NRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKL 701
R S+S R + ++P + + LP S++F+ + + ++
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-----------FENTD 356
Query: 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETF 759
+L+GV+ + +PG L A++G TGSGK+TLM+++ RG + + K ++
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 819
IS ++ + S T+ E+L + E+ + + +
Sbjct: 417 GHISAVPQETVLFSG--TIKENLKWGREDATDDEIVEAAKIAQ------------IHDFI 462
Query: 820 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 ISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 144 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 203
+SGGQ++RV L L D+ ++ LD +TT I+ L N L G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLIT 221
Query: 204 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQ 263
V + D + ++S+G++ +EQ +S F PK F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTLHLDIP 273
Query: 264 EQYWVR-NDEPY 274
E Y R EP+
Sbjct: 274 EDYQERLQAEPF 285
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 139 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 198
D +SGGQ++RV L L D+ ++ LD +TT I+ L N L G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 199 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVT 258
++ + V + D + ++S+G++ +EQ +S F PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTL 268
Query: 259 SRKDQEQYWVR-NDEPY 274
E Y R EP+
Sbjct: 269 HLDIPEDYQERLQAEPF 285
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 671 FEPFSLTFDEITYSVDM---------PQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMG 721
E FSLT E + V++ P++ R L ++ G AL+G
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR--------TLKSINFFIPSGTTCALVG 53
Query: 722 VTGSGKTTLMDVLAGRKTRGY-ITGNITISGY---PKNQETFTRISGYCEQNDIHSPYVT 777
TGSGK+T+ +L R Y G+I I G N+ + I G Q+ I
Sbjct: 54 HTGSGKSTIAKLLY----RFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109
Query: 778 VYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVNGLSTEQRKRL 836
Y ++LY EV T+ P + +VG G+ LS +R+R+
Sbjct: 110 KY-NILYGKLDATDEEVIKATKSAQLYDFIEAL---PKKWDTIVGNKGMK-LSGGERQRI 164
Query: 837 TIAVELVANPSIIFMDEPTSGLD 859
IA L+ +P I+ DE TS LD
Sbjct: 165 AIARCLLKDPKIVIFDEATSSLD 187
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 134 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF---HIVNSLGQF 190
DT+VG++ ++ +SGG+R+R+ L+ + DE ++ LDS T + V L +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 191 NHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
++ +S + A + IIL++ G+IV +G
Sbjct: 205 RTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 20/194 (10%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISGYPKNQE 757
L +L G++ R G + ++G +GSGK+T + ++L I I + N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSEVNSKTRXXXXXXXXXXXXX 812
G Q P++TV ++ + W R +E +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-------- 127
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXX 872
L+ P + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 128 --LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 873 XXDTGRTVVCTIHQ 886
+ G T+V H+
Sbjct: 184 LANEGMTMVVVTHE 197
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGY------PKNQ 756
+S + G L+G +G GKTT + +AG TRG YI N+ PK +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNP 814
+ Y P+ TVY+++ + LR E++ + R
Sbjct: 85 DVAXVFQSYALY-----PHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
R+ LS QR+R+ + ++ P + DEP S LD
Sbjct: 140 PRE----------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
Score = 36.6 bits (83), Expect = 0.082, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 86/236 (36%), Gaps = 46/236 (19%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYN---GHDMHEFVP--QRTAAYISQHDI 57
+LLGP G GKTT + +AG L+ + + N + FVP +R A + Q
Sbjct: 36 VLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
TV + +AF + + V P +ID VRE E
Sbjct: 95 LYPHXTVYDNIAFPLKLRKV--------------------PKQEID----KRVREVAEXL 130
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDS 177
+T+ + + R +SGGQR+RV G ++ DE + LD+
Sbjct: 131 GLTELL---------------NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
Query: 178 STTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
L + L G I + E D I + + G++ G + V
Sbjct: 176 KLRVKXRAELKKLQRQL-GVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 45/229 (19%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGE 61
L+GP G GK+T++ L D+ G++ +G ++ P+ T + I+ + + +
Sbjct: 1110 LVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
++ E + + V +++ E+AA++ A+I F+ A + EG E
Sbjct: 1167 CSIAENIIYGLDPSSV--------TMAQVEEAARL---ANIHNFI-AELPEGFE------ 1208
Query: 122 YILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
T VGD RG +SGGQ++R+ LV L +DE ++ LD+ +
Sbjct: 1209 -------------TRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+ +L + G I + V N D I +VS+G I+ +G
Sbjct: 1253 EKVVQEAL---DRAREGRTCIVIAHRLNTVMNA-DCIAVVSNGTIIEKG 1297
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 24/198 (12%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYP---- 753
++ +L G+S + PG AL+G +G GK+T++ +L R Y T G I I G
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE----RFYDTLGGEIFIDGSEIKTL 1146
Query: 754 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXN 813
+ T ++I+ ++ + ++ E+++Y + +S T N
Sbjct: 1147 NPEHTRSQIAIVSQEPTLFD--CSIAENIIYGL------DPSSVTMAQVEEAARLANIHN 1198
Query: 814 PLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXX 868
+ + G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 1199 FIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 869 XXXXXXDTGRTVVCTIHQ 886
+ GRT + H+
Sbjct: 1259 ALDRARE-GRTCIVIAHR 1275
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 32/200 (16%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L G++ G AL+G +G GK+T++ +L + + G ITI G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG----------- 479
Query: 763 SGYCEQNDIHSPY------VTVYESLLYSAWLRLSSEVNSK--TRXXXXXXXXXXXXXNP 814
+ DI+ + V E L++ + + + + TR
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 815 LR------QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXX 868
++ LVG G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 537 IKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 869 XXXXXXDTGRTVVCTIHQPS 888
GRT + H+ S
Sbjct: 596 ALDKAAK-GRTTIIIAHRLS 614
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 55/233 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMH----EFVPQRTAAYISQHDIHI 59
L+G G GK+T++ L D LK GK+T +G D+ EF+ ++ A +SQ +
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDV-LK--GKITIDGVDVRDINLEFL-RKNVAVVSQEP-AL 503
Query: 60 GEMTVRETLAFSARCQGVGSRYDML--VELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
T+ E ++ +G+ +R +M+ +++ EK K +P+
Sbjct: 504 FNCTIEENISLGK--EGI-TREEMVAACKMANAEKFIKTLPNG----------------- 543
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+T+VGD RG +SGGQ++R+ LV L +DE ++ L
Sbjct: 544 ---------------YNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
D+ + + +L + G I + + N D II +GQ+V G
Sbjct: 586 DAESEGIVQQAL---DKAAKGRTTIIIAHRLSTIRNA-DLIISCKNGQVVEVG 634
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 20/194 (10%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISGYPKNQE 757
L +L G++ R G + ++G +GSGK+T + ++L I I + N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 758 TFTRISGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSEVNSKTRXXXXXXXXXXXXX 812
G Q P++TV ++ + W R +E +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-------- 148
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXX 872
L+ P + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 149 --LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 873 XXDTGRTVVCTIHQ 886
+ G T+V H+
Sbjct: 205 LANEGMTMVVVTHE 218
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYP- 753
+D K +L ++ +PG AL+G TGSGKTT++++L R Y G I + G
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM----RFYDVDRGQILVDGIDI 419
Query: 754 -KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXX 812
K + + R S D TV E+L Y E+ +
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL-- 477
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
P V LS QR+ L I +ANP I+ +DE TS +D
Sbjct: 478 -PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 43/234 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGE 61
L+GP GSGKTT++ L D G++ +G D+ + R++ I D +
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS 442
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
TV+E L + G+ + + E AAK+ D F+K + EG E V+TD
Sbjct: 443 TTVKENLKYG----NPGATDEEIKE------AAKLTHS---DHFIKH-LPEGYET-VLTD 487
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
G+++ S GQR+ + + L +DE ++ +D+ T
Sbjct: 488 N---------------GEDL----SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 235
I ++ + ++ G I + + N D II++ DG+IV G + + Q
Sbjct: 529 SIQAAMWK---LMEGKTSIIIAHRLNTIKNA-DLIIVLRDGEIVEMGKHDELIQ 578
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 756
+D++ +L ++ + G A +G++G GK+TL++++ + +G I I G+ N
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGH--NI 405
Query: 757 ETFTRIS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 811
+ F S G +Q++I TV E++L EV +
Sbjct: 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 812 XNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 465 QG--YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 5 LGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEM 62
+G G GK+TL+ + D + SG++ +GH++ +F+ R + Q D +
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429
Query: 63 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 122
TV+E + L R A + VV + AN D+
Sbjct: 430 TVKENI------------------LLGRPTATD-----------EEVVEAAKMANA-HDF 459
Query: 123 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 182
I+ +L DT VG+ ++ +SGGQ++R++ + + L +DE ++ LD +
Sbjct: 460 IM---NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 183 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
I +L + + T LI + + + D I+++ +G IV G
Sbjct: 516 IQEALDVLSK--DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDI 771
G + A++G G GK+TL+D+L G R +G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQ-FF 75
Query: 772 HSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTE 831
SP+ S+L + S+ +N+ + + L + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 832 QRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDT-GRTVVCTIHQPS 888
QR+ + IA + + +I +DEPTS LD + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
G + VI + +V ++ A + D + +SGGQR+RV G LV +DE
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 231
+ LD++ + + + + L G +I + E L D I+++ G++ G PLE
Sbjct: 162 SNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 771
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 772 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 829
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
QR+R+ I LVA PS+ +DEP S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 671 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 727
F P+ + F +++ VD+ +E R V D L G R G + ++G G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 728 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV-YESLLY 784
TT + +LAG T G + ++T++ P+ Y+ YE +Y
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--------------------YIKAEYEGTVY 435
Query: 785 SAWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 843
++ SS++NS PL + V LS + +R+ IA L+
Sbjct: 436 ELLSKIDSSKLNSN--------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 487
Query: 844 ANPSIIFMDEPTSGLD 859
+ I +DEP++ LD
Sbjct: 488 RDADIYLLDEPSAYLD 503
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 139 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 198
D L +SGG+ +RV L+ AH F DE S+ LD + + + N
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI---RRLANEGK 279
Query: 199 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPK--RKGIADFLQ 255
+ +++ V + D+I +VY P + F PK R GI +FLQ
Sbjct: 280 AVLVVEHDLAVLDYLSDVI-----HVVYGEP-------GVYGIFSKPKGTRNGINEFLQ 326
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
G + VI + +V ++ A + D + +SGGQR+RV G LV +DE
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 231
+ LD++ + + + + L G +I + E L D I+++ G++ G PLE
Sbjct: 162 SNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 771
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 772 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 829
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
QR+R+ I LVA PS+ +DEP S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 10/195 (5%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYI-TGNITISGYPKNQETFT 760
L V+ + G ++MG +GSGK+T+++++ + T G + NI + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 761 RIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
R G+ Q P +T E++ + ++ + R L +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE---LEER 137
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTG 877
N LS Q++R+ IA L NP II D+PT LD + G
Sbjct: 138 FANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 878 RTVVCTIHQPSIDIF 892
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 671 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 727
F P+ + F +++ VD+ +E R V D L G R G + ++G G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 728 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV-YESLLY 784
TT + +LAG T G + ++T++ P+ Y+ YE +Y
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--------------------YIKAEYEGTVY 421
Query: 785 SAWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 843
++ SS++NS PL + V LS + +R+ IA L+
Sbjct: 422 ELLSKIDSSKLNSN--------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 473
Query: 844 ANPSIIFMDEPTSGLD 859
+ I +DEP++ LD
Sbjct: 474 RDADIYLLDEPSAYLD 489
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 139 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 198
D L +SGG+ +RV L+ AH F DE S+ LD + + + N
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI---RRLANEGK 265
Query: 199 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPK--RKGIADFLQ 255
+ +++ V + D+I +VY P + F PK R GI +FLQ
Sbjct: 266 AVLVVEHDLAVLDYLSDVI-----HVVYGEP-------GVYGIFSKPKGTRNGINEFLQ 312
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 54/230 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKA----SGK-VTYNGHDMHEFVPQRTAAYISQHDIH 58
++G GSGK+TL+ L G LD+ + GK V Y + R ++ Q
Sbjct: 35 IIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93
Query: 59 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANV 118
I E+T E + I+P M + + +EA
Sbjct: 94 IPELTALENV---------------------------IVP-------MLKMGKPKKEAKE 119
Query: 119 ITDYILKVLDLDVCADTVVGDEMLRG---ISGGQRKRVTTGEMLVGPAHALFMDEISTGL 175
+Y+L L L GD++ R +SGG+++RV L LF DE + L
Sbjct: 120 RGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 176 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 225
DS+ T +++ + N GT+++ ++ E+ L + + DG++V
Sbjct: 172 DSANTKRVMDIFLKINE--GGTSIV-MVTHERELAELTHRTLEMKDGKVV 218
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYITGNITISGYPKNQETF- 759
+L G+S + + G +++G +GSGK+TL+ +L T G + Y +E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 760 --TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQ 817
R G+ Q P +T E+++ + +K R L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG------LGD 132
Query: 818 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTG 877
L P LS +++R+ IA L P ++F DEPT LD + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 878 RTVVCTIHQ 886
++V H+
Sbjct: 191 TSIVMVTHE 199
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 686 DMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI 743
D+ E++ V+ + + G+ G + L+G G+GKTT + +AG R +G I
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 744 TGN-ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 802
N I+ P + I+ E I P +TVYE+L A+ N K +
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIF-PELTVYENLXXGAY-------NRKDKEGI 115
Query: 803 XXXXXXXXXXNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 858
P L++ L L G LS +++ L I L + P ++ DEP+ GL
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM 40
L+G G+GKTT + A+AG + + GK+ +NG D+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDI 70
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG----YITGNITISGYPKN 755
K+V L+ V+ G ++G +G+GKTT M ++AG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTRXXXXXXXXXXXXXNP 814
R G Q P +T +E++ + +++S E K N
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXX 874
+ L G Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 137 FPRELSG---------AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 875 DT-GRTVVCTIHQPSIDIFEAFD 896
G T++ H P+ DIF D
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIAD 209
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 59/241 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG--- 60
+LGP G+GKTT M +AG LD + ++G++ ++ V + D IG
Sbjct: 36 ILGPSGAGKTTFMRIIAG-LD--VPSTGELYFDDR----LVASNGKLIVPPEDRKIGMVF 88
Query: 61 -------EMTVRETLAFSARCQGVGSRYDMLVELSRR-EKAAKIIPDADIDVFMKAVVRE 112
+T E +AF + E+ +R E+ AKI+ DI + RE
Sbjct: 89 QTWALYPNLTAFENIAFPLTNMKMSKE-----EIRKRVEEVAKIL---DIHHVLNHFPRE 140
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
+SG Q++RV LV L +DE
Sbjct: 141 --------------------------------LSGAQQQRVALARALVKDPSLLLLDEPF 168
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
+ LD+ + + L T L+ PA +++ + D + ++ G++V G E
Sbjct: 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPED 227
Query: 233 V 233
+
Sbjct: 228 L 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 10/195 (5%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYI-TGNITISGYPKNQETFT 760
L V+ + G ++MG +GSGK+T+++++ + T G + NI + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 761 RIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 818
R G+ Q P +T E++ + ++ + R L +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE---LEER 137
Query: 819 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTG 877
N LS Q++R+ IA L NP II D+PT LD + G
Sbjct: 138 FANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 878 RTVVCTIHQPSIDIF 892
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
G + VI + +V ++ A + D + +SGGQR+RV G LV +D+
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPL 161
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 231
+ LD++ + + + + L G +I + E L D I+++ G++ G PLE
Sbjct: 162 SNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 714 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 771
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 772 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 829
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 830 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
QR+R+ I LVA PS+ +D+P S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 700 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG----YITGNITISGYPKN 755
K+V L+ V+ G ++G +G+GKTT M ++AG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 756 QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTRXXXXXXXXXXXXXNP 814
R G Q P +T +E++ + +++S E K N
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 815 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXX 874
+ L G Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 137 FPRELSG---------GQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 875 DT-GRTVVCTIHQPSIDIFEAFD 896
G T++ H P+ DIF D
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIAD 209
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 59/241 (24%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG--- 60
+LGP G+GKTT M +AG LD + ++G++ ++ V + D IG
Sbjct: 36 ILGPSGAGKTTFMRIIAG-LD--VPSTGELYFD----DRLVASNGKLIVPPEDRKIGMVF 88
Query: 61 -------EMTVRETLAFSARCQGVGSRYDMLVELSRR-EKAAKIIPDADIDVFMKAVVRE 112
+T E +AF + E+ +R E+ AKI+ DI + RE
Sbjct: 89 QTWALYPNLTAFENIAFPLTNMKMSKE-----EIRKRVEEVAKIL---DIHHVLNHFPRE 140
Query: 113 GQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 172
+SGGQ++RV LV L +DE
Sbjct: 141 --------------------------------LSGGQQQRVALARALVKDPSLLLLDEPF 168
Query: 173 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 232
+ LD+ + + L T L+ PA +++ + D + ++ G++V G E
Sbjct: 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPED 227
Query: 233 V 233
+
Sbjct: 228 L 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 669 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT 728
+ E + L +E+ Y+ + D L G++ + G +TA++G G GK+
Sbjct: 1 MSLEDYILKVEELNYN------------YSDGTHALKGINMNIKRGEVTAILGGNGVGKS 48
Query: 729 TLMDVLAG--RKTRGYITGNITISGYPKNQETFTRIS-GYCEQNDIHSPY-VTVYESLLY 784
TL G + + G I + Y + R S G Q+ + + +VY+ + +
Sbjct: 49 TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108
Query: 785 SAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA 844
A VN K + L P + LS Q+KR+ IA LV
Sbjct: 109 GA-------VNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLSFGQKKRVAIAGVLVM 160
Query: 845 NPSIIFMDEPTSGLD 859
P ++ +DEPT+GLD
Sbjct: 161 EPKVLILDEPTAGLD 175
Score = 36.6 bits (83), Expect = 0.089, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 139 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 198
D+ +S GQ+KRV +LV L +DE + GLD I+ L + L T
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 199 LISLLQPAPEVYNLF-DDIILVSDGQIVYQGPLEHV---EQFFISMGFKCPKRKGIADFL 254
+I+ ++ L+ D++ ++ +G+++ QG + V ++ + + P+ + + L
Sbjct: 198 IIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEIL 255
Query: 255 QE 256
+E
Sbjct: 256 KE 257
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L +SG R G + L+G G+GK+TL+ AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 822 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 869
L G ST QR RL V + ANP+ ++ +DEP + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI 175
Query: 870 XXXXXDTGRTVVCTIH 885
G +V + H
Sbjct: 176 LSALSQQGLAIVXSSH 191
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 886
LS Q++R++IA L P ++ DEPTS LD + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 145 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 204
+SGGQ++RV+ L L DE ++ LD ++ + Q G ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 205 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 255
++ +I + G+I +G E V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L +SG R G + L+G G+GK+TL+ AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 822 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLD 859
L G ST QR RL V + ANP+ ++ +DEP + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L +SG R G + L+G G+GK+TL+ +AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 822 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 869
L G ST QR RL V + ANP+ ++ +D+P + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKI 175
Query: 870 XXXXXDTGRTVVCTIH 885
G +V + H
Sbjct: 176 LSALSQQGLAIVMSSH 191
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTGRTVVCTI 884
N LS Q++R+ IA L NP II DEPT LD + G+TVV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 885 HQPSIDIF 892
H ++ F
Sbjct: 204 HDINVARF 211
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYP-----KNQ 756
LNG++ + G L A++G G GK++L+ L K G++ +++ P +N
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQND 80
Query: 757 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV-NSKTRXXXXXXXXXXXXXNPL 815
I C+ + PY Y S++ + L E+ S R
Sbjct: 81 SLRENILFGCQ---LEEPY---YRSVIQACALLPDLEILPSGDRTE-------------- 120
Query: 816 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+G GVN LS Q++R+++A + +N I D+P S +D
Sbjct: 121 ----IGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 56/236 (23%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ ++G G GK++L+ AL ++D K G V G +VPQ+ A+I Q+D
Sbjct: 33 LVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS--VAYVPQQ--AWI-QND---- 80
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVIT 120
++RE + F CQ Y +++ A ++PD +I
Sbjct: 81 --SLRENILFG--CQLEEPYYRSVIQ------ACALLPDLEI------------------ 112
Query: 121 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 180
L T +G++ + +SGGQ++RV+ + A D+ + +D+
Sbjct: 113 --------LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 181 FHIV-NSLGQFNHILNGTALISL--LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
HI N +G + N T ++ + P+V D II++S G+I G + +
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQV----DVIIVMSGGKISEMGSYQEL 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L +SG R G + L+G G+GK+TL+ +AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 764 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 822 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 869
L G ST QR RL V + ANP+ ++ +D+P LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKI 175
Query: 870 XXXXXDTGRTVVCTIH 885
G +V + H
Sbjct: 176 LSALSQQGLAIVMSSH 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 719 LMGVTGSGKTTLMDVLAG--RKTRGYITGN-ITISGYPKNQETFTRISGYCEQNDIHSPY 775
L+G TG+GK+ ++++AG + RG + N I+ P + R G+ Q+ P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 776 VTVYESLLYSAWLR---LSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQ 832
++VY ++ Y LR P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 833 RKRLTIAVELVANPSIIFMDEPTSGLD 859
R+R+ +A LV P ++ +DEP S +D
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVD 158
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 46/232 (19%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTA-AYISQHDIHIGE 61
+LLGP G+GK+ + +AG + G+V NG D+ P+R ++ Q
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 62 MTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
++V +A+ R R + E++ + A ++
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------ 120
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
D +SGG+R+RV LV L +DE + +D T
Sbjct: 121 -----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
++ L +F ++ + E L D++ ++ +G+IV +G L+ +
Sbjct: 164 VLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 26/203 (12%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY----- 752
+DK +L G+S PG + A+MG GSGK+TL LAGR+ G + G
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 753 -PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 811
P+++ + Q + P V S L + +N+
Sbjct: 71 SPEDRAGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQETLDRFDF 120
Query: 812 XNPLRQ--ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX 862
+ + + AL+ +P VN G S ++KR I V P + +DE SGLD
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 863 XXXXXXXXXXXXDTGRTVVCTIH 885
D R+ + H
Sbjct: 181 LKVVADGVNSLRDGKRSFIIVTH 203
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA 50
++GP GSGK+TL LAG+ D + G V + G D+ P+ A
Sbjct: 32 IMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAG 77
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 26/203 (12%)
Query: 698 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY----- 752
+DK +L G+S PG + A+MG GSGK+TL LAGR+ G + G
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 753 -PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 811
P+++ + Q + P V S L + +N+
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQETLDRFDF 139
Query: 812 XNPLRQ--ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX 862
+ + + AL+ +P VN G S ++KR I V P + +DE SGLD
Sbjct: 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 863 XXXXXXXXXXXXDTGRTVVCTIH 885
D R+ + H
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTH 222
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA 50
++GP GSGK+TL LAG+ D + G V + G D+ P+ A
Sbjct: 51 IMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAG 96
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 41/178 (23%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYIS-QHDIHI 59
L+GP G+GK+TL LAG + +++ G++ +G ++ E P R +++ Q+ + +
Sbjct: 34 LMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92
Query: 60 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVI 119
+T+ L R + +L R A+ F V +
Sbjct: 93 PGVTIANFL-----------RLALQAKLGREVGVAE---------FWTKVKKA------- 125
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV-GPAHALFMDEISTGLD 176
L++LD D ++ + + G SGG++KR ++LV P +A+ +DE +GLD
Sbjct: 126 ----LELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV-LDETDSGLD 175
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 699 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG------Y 752
D +L GV+ G + ALMG G+GK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 753 PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXX 812
P + + Q + P VT+ L + +L EV
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 813 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
+ ++ + G S ++KR I LV P+ +DE SGLD
Sbjct: 132 D---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 43/230 (18%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMT 63
L+GP G+GK+T++ L D S SG + +G D + Q T A + H + + T
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQD----ISQVTQASLRSHIGVVPQDT 137
Query: 64 V--RETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITD 121
V +T+A + R V + D + E AA +A I D
Sbjct: 138 VLFNDTIADNIRYGRVTAGNDEV------EAAA--------------------QAAGIHD 171
Query: 122 YILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 181
I+ + T VG+ L+ +SGG+++RV ++ + +DE ++ LD+S
Sbjct: 172 AIMAFPE---GYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 182 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 231
I SL + N T ++ + V N D I+++ DG IV +G E
Sbjct: 228 AIQASLAKV--CANRTTIV-VAHRLSTVVNA-DQILVIKDGCIVERGRHE 273
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 763
L VS PG AL+G +G+GK+T++ +L + +G I I G +Q T +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 764 ---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALV 820
G Q+ + T+ +++ Y + EV + + Q V
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ--V 184
Query: 821 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
G G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALD 222
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH--DIHIG 60
L+ G GSGK+TL+ +AG ++ + SG V Y+G + +R Q+ D
Sbjct: 37 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD-IDVFMKAVVREGQEANVI 119
E E +AF+ + PD D + + KA+ G
Sbjct: 94 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKAMEFVG------ 125
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
LD D D V +SGG+++RV ++V L +DE GLD
Sbjct: 126 -------LDFDSFKDRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP-LEHVEQF 236
++ + ++ + G +I + V N D ++++ G+ V+ G +E +E++
Sbjct: 174 KTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 886
LS +++R+ IA +V P I+ +DEP GLD G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 701 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT 760
+++L G++ RPG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGGQLLLDGKPLPQY--- 84
Query: 761 RISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 819
E +H V E ++ L+ + T+ + +
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQ-ENIAYGLTQKPTMEEITAAAVKSGAHSFI 137
Query: 820 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
GLP + LS QR+ + +A L+ P ++ +D+ TS LD
Sbjct: 138 SGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH--DIHIG 60
L+ G GSGK+TL+ +AG ++ + SG V Y+G + +R Q+ D
Sbjct: 39 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 61 EMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD-IDVFMKAVVREGQEANVI 119
E E +AF+ + PD D + + KA+ G
Sbjct: 96 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKAMEFVG------ 127
Query: 120 TDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 179
LD D D V +SGG+++RV ++V L +DE GLD
Sbjct: 128 -------LDFDSFKDRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 180 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP-LEHVEQF 236
++ + ++ + G +I + V N D ++++ G+ V+ G +E +E++
Sbjct: 176 KTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 886
LS +++R+ IA +V P I+ +DEP GLD G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 671 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 727
F P+ + F + V++ +E R V D L G + G + ++G G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 728 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYS 785
TT + LAG T G I ++T++ P+ Y + + YE +Y
Sbjct: 326 TTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGTVYE 366
Query: 786 AWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA 844
++ +S++NS PL + VN LS + +R+ IA L+
Sbjct: 367 LLSKIDASKLNSN--------FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418
Query: 845 NPSIIFMDEPTSGLD 859
+ I +DEP++ LD
Sbjct: 419 DADIYLLDEPSAYLD 433
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT----ISGYPKN--QETFTRISGY 765
+ G + ++G G+GK+T + +LAG+ N + I + N Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 766 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGV 825
+ + YV + + + L + + + N L + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE--NVLERE------I 156
Query: 826 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIH 885
LS + +R+ IA L+ N + F DEP+S LD + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 886 QPSI 889
++
Sbjct: 217 DLAV 220
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 23/198 (11%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 763 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 822 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXX 872
P N LS QR+ + +A L+ P ++ +D+ TS LD
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 873 XXD-TGRTVVCTIHQPSI 889
+ RTV+ HQ S+
Sbjct: 202 SPEWASRTVLLITHQLSL 219
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 42/187 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM----HEFVPQRTAAYISQHD 56
+T L+GP GSGK+T+ L + GKV +G + H ++ + AA + Q
Sbjct: 47 VTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAA-VGQEP 102
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ G + RE +A+ L+R +I AV E
Sbjct: 103 LLFGR-SFRENIAYG---------------LTRTPTMEEIT----------AVAMESGAH 136
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ I+ + DT VG E +SGGQR+ V L+ L +D+ ++ LD
Sbjct: 137 DFISGF-------PQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
Query: 177 SSTTFHI 183
+ +
Sbjct: 189 AGNQLRV 195
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 145 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 204
+S G+++RV L G L +DE + GLD +++ L + A I +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 205 PAPEVYNLFDDIILVSDGQIVYQGPLEHV 233
E+ F I+L+ DGQ + QG +E +
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDI 250
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 14/186 (7%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETF 759
+L G+S G + L+G G+GKTT + +++ +G +T+ G + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEVR 87
Query: 760 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 819
IS E+ Y ++ +LR + + + L + +
Sbjct: 88 KLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 140
Query: 820 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRT 879
V+ S ++L IA L+ NP + +DEPTSGLD G T
Sbjct: 141 KDR--VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 880 VVCTIH 885
++ + H
Sbjct: 199 ILVSSH 204
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-DV 733
S+ I SVD +++ G + L G+ +F GVLT++ GV+GSGK+TL+ D+
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 734 LA 735
LA
Sbjct: 689 LA 690
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 763 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 822 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
P N LS QR+ + +A L+ P ++ +D TS LD
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 42/187 (22%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDM----HEFVPQRTAAYISQHD 56
+T L+GP GSGK+T+ L + GKV +G + H ++ + AA + Q
Sbjct: 47 VTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAA-VGQEP 102
Query: 57 IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116
+ G + RE +A+ L+R +I AV E
Sbjct: 103 LLFGR-SFRENIAYG---------------LTRTPTMEEIT----------AVAMESGAH 136
Query: 117 NVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLD 176
+ I+ + DT VG E +SGGQR+ V L+ L +D ++ LD
Sbjct: 137 DFISGF-------PQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 177 SSTTFHI 183
+ +
Sbjct: 189 AGNQLRV 195
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 762
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 763 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 821
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 822 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
P N L+ QR+ + +A L+ P ++ +D TS LD
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSL 27
LL GPPG+GKT L LA+A +L S +
Sbjct: 81 LLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSL 27
LL GPPG+GKT L LA+A +L S +
Sbjct: 67 LLAGPPGTGKTALALAIAQELGSKV 91
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 828 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 859
LS ++R+ IA+ L+ +P ++ +DEPTS LD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 59/202 (29%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHD---MHE------------FV 44
+T ++G SGK+T++ A+ L + + SG+V Y G D M E V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 45 PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE-LSRREKAAKIIPDADID 103
PQ ++ M V E + GV + L+E S + + ++ P+A
Sbjct: 96 PQAAQQSLNP------TMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA--- 146
Query: 104 VFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPA 163
V+ Y L+ +SGG ++RV L+
Sbjct: 147 --------------VLNSYPLQ-------------------LSGGMKQRVLIALALLLDP 173
Query: 164 HALFMDEISTGLDSSTTFHIVN 185
L +DE ++ LD T HI+
Sbjct: 174 VVLILDEPTSALDVLTQAHIIQ 195
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 76/253 (30%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQHDI 57
M ++GP G+GK+TL+ L G L S G+ G +++ + P+ RT A + Q+
Sbjct: 39 MVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSE 95
Query: 58 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEAN 117
+V E + G GS+ R+ +++ D +
Sbjct: 96 LAFPFSVSEVIQMGRAPYG-GSQ--------DRQALQQVMAQTDCLALAQ---------- 136
Query: 118 VITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVG------PAHALFMDEI 171
DY R +SGG+++RV +L LF+DE
Sbjct: 137 --RDY--------------------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP 174
Query: 172 STGLDSSTTFHIVNSLGQFN-----------HILNGTALISLLQPAPEVYNLFDDIILVS 220
++ LD H + L Q H LN AL + D I+L++
Sbjct: 175 TSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA------------DRIMLLA 222
Query: 221 DGQIVYQGPLEHV 233
G++V G E V
Sbjct: 223 QGKLVACGTPEEV 235
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 697 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG 736
H + L+N VS G + A++G G+GK+TL+ +L G
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHE 42
++LGP GSGKTTL+ A++G L SG + NG ++ +
Sbjct: 34 IILGPNGSGKTTLLRAISG----LLPYSGNIFINGMEVRK 69
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPK 754
+LN G F + +MG G+GKTTL+ +LAG + G + +S P+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ 420
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 712 RPGVLTALMGVTGSGKTTLMDVLAGRK 738
RPG + L+G G GK+T + +LAG++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 136 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 195
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 948
Query: 196 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+I + A NL +++ V DG++ G
Sbjct: 949 -GGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH 55
++GP G+GK+TL+ L G+L L SG+V + + ++ Q A+I H
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 752
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH 55
++GP G+GK+TL+ L G+L L SG+V + + ++ Q A+I H
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 752
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 136 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 195
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 948
Query: 196 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+I + A NL +++ V DG+ G
Sbjct: 949 -GGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 4 LLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH 55
++GP G+GK+TL+ L G+L L SG+V + + ++ Q A+I H
Sbjct: 698 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 746
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 136 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 195
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 887 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 942
Query: 196 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 228
+I + A NL +++ V DG+ G
Sbjct: 943 -GGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTY 35
M + G GSGKT+L++ + G+L++S +K SG+V++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTY 35
M + G GSGKT+L++ + G+L++S +K SG+V++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTY 35
M + G GSGKT+L++ + G+L++S +K SG+V++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTY 35
M + G GSGKT+L++ + G+L++S +K SG+V++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSS---LKASGKVTY 35
M + G GSGKT+L++ + G+L++S +K SG+V++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 1 MTLLLGPPGSGKTTLMLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIG 60
+ L+ GP GSGK+T + A+ L+++ K +T D EFV + ++Q ++H
Sbjct: 125 LVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIE--DPIEFVHESKKCLVNQREVH-- 179
Query: 61 EMTVRETLAFS 71
R+TL FS
Sbjct: 180 ----RDTLGFS 186
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 704 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754
L +S +P V+ A++G+ +GK+ LM+ LAG+K +G+ G+ T+ + K
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGS-TVQSHTK 76
>pdb|2B9B|A Chain A, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|B Chain B, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|C Chain C, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
Length = 497
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 732 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 770
+V+A TR +TG++ I YP +Q T T + YC ND
Sbjct: 279 EVMAQLPTRVMVTGSL-IQAYPASQCTITPNTVYCRYND 316
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 3 LLLGPPGSGKTTLMLALAGK 22
LL+GPPG+GKT L A+AG+
Sbjct: 53 LLVGPPGTGKTLLARAVAGE 72
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 3 LLLGPPGSGKTTLMLALAGK 22
LL+GPPG+GKT L A+AG+
Sbjct: 48 LLVGPPGTGKTLLAKAVAGE 67
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG GKTTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG GKTTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG GKTTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG GKTTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG GKTTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 567 AYWYWLGVGALTGFIILFQFGFTLALSF-------LNPFGTSKAFISEESQ------STE 613
AYWY L +GA T F+ +F G+T L PF F+S E+
Sbjct: 635 AYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHN 694
Query: 614 HDSRTGGT---VQLSTCANSSSHITRSESRD---YVRRRNSSSQSR 653
D R G +++S+C ++ D Y+ +N++ + R
Sbjct: 695 SDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLLSKNNAIEPR 740
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 567 AYWYWLGVGALTGFIILFQFGFTLALSF-------LNPFGTSKAFISEESQ------STE 613
AYWY L +GA T F+ +F G+T L PF F+S E+
Sbjct: 636 AYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHN 695
Query: 614 HDSRTGGT---VQLSTCANSSSHITRSESRD---YVRRRNSSSQSR 653
D R G +++S+C ++ D Y+ +N++ + R
Sbjct: 696 SDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLLSKNNAIEPR 741
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 3 LLLGPPGSGKTTLMLALAGK 22
L++GPPG+GKT L A+AG+
Sbjct: 49 LMVGPPGTGKTLLAKAIAGE 68
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKAS 30
LL GPPG GKTTL +A +L +L+ +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKAS 30
LL GPPG GKTTL +A +L +L+ +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKAS 30
LL GPPG GKTTL +A +L +L+ +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKV 33
LLLGPPG+GK T + LA KL ++G++
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 54
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKASGKV 33
LLLGPPG+GK T + LA KL ++G++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 34
>pdb|4GIP|D Chain D, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|E Chain E, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|F Chain F, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
Length = 409
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 732 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 770
+V+A TR +TG++ I YP +Q T T + YC ND
Sbjct: 198 EVMAQLPTRVMVTGSL-IQAYPASQCTITPNTVYCRYND 235
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTL---MDVLAGRK 738
+ G F PGVLT + G SGKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 3 LLLGPPGSGKTTLMLALAGKLDSSLKA-SGKVTYNGHDM 40
LL GPPG G+TTL +A +L +++ SG V DM
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 703 LLNGVSGAFRPGVLTALMGVTGSGKTTLM 731
+L +S + PG L+G TGSGK+TL+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLL 64
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 707 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754
+S +P V+ A++G+ +GK+ LM+ LAG+K +G+ G+ T+ + K
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGS-TVQSHTK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,088,972
Number of Sequences: 62578
Number of extensions: 1371366
Number of successful extensions: 4689
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4337
Number of HSP's gapped (non-prelim): 345
length of query: 1245
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1135
effective length of database: 8,089,757
effective search space: 9181874195
effective search space used: 9181874195
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)