Query 000872
Match_columns 1245
No_of_seqs 282 out of 4607
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 15:51:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000872.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_643-646//hhsearch_pdb/000872hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 637.5 43.6 194 674-889 1075-1278(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 573.0 38.7 200 674-897 1029-1238(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 432.7 29.7 184 675-897 357-541 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 427.1 27.0 186 675-897 269-455 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 422.1 30.9 184 675-897 287-471 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 411.0 34.7 167 1-233 463-633 (986)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 406.2 30.5 198 1-233 46-296 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 400.9 26.6 171 702-897 361-537 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 327.6 15.6 198 674-897 414-621 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 320.2 34.1 174 702-888 598-869 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=637.49 Aligned_cols=194 Identities=28% Similarity=0.394 Sum_probs=160.0
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 08999959999945710001353467420222417999488499998699997899999996999998057999997950
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++|+|++++|+.. ...++|+|+|+.|+|||++||+|+||||||||+++|.|...+ .+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEE
T ss_conf 818999879857999----------988212451699889899999899998199999999568638--99789999998
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCC
Q ss_conf 894---433341899724887899999999999998702998898778999999999982994-------3222223688
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~g~~ 823 (1245)
... ..+|+.++||||+..++. -|++||+.|.. .|.+. .++.++++++..++. +-.||.+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSV----TMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred HHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCC----CHHHHHHHHHHHCCHHHHHCCCCCCCCEECCC
T ss_conf 654999999854599878997327-23999974549---99999----99999999998298499971767899982388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 888679789999999999962997658948999999999999999999987389889999158888
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 889 (1245)
Q Consensus 824 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~ 889 (1245)
|. .+|||||||+||||+|+++|+||+||||||+||+.|+..|++.|++.. +|+|+|+++|+.+.
T Consensus 1215 G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1215 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT 1278 (1321)
T ss_dssp SC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST
T ss_pred CC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH
T ss_conf 91-569999999999999971799899968111578999999999999973-99989996068999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=573.04 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=155.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 08999959999945710001353467420222417999488499998699997899999996999998057999997950
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEE
T ss_conf 857999989977999----------987002030599769988999889999789999999468678--99779899998
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 894---43334189972488789999999999999870299889877899999999998299-------43222223688
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~ 823 (1245)
... ..+++.++||+|+..++ ..|++|++.+....+ ....+ .+++.++..++ .+..|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred CCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCCC---CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCC
T ss_conf 00078999970268987787406-666999974668778---99999----99999998395999972704245611788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 88867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
+ ..||||||||++|||+|+.+|+||+|||||+|||..++..+++.+++. .+|+|+|+++|+++. + ...|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSE
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCE
T ss_conf 8-933899999999999997499999986875557999999999999986-799989999558799-9-80998
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=432.70 Aligned_cols=184 Identities=23% Similarity=0.298 Sum_probs=147.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. . ..|+++++.+++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899913098744-------------3-489935153279989999999998999999999669888--8628999-----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 94433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
...++|++|+....+.+||.|++....... ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHH
T ss_conf -----027999805766778984999997531258-------778999999998769933754992-----237999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 9999999962997658948999999999999999999987-38988999915888899998640
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~-~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|++||++|+.+|++|+|||||+|||..++..+.+.|++++ +.|.|||+++|+.. .+....|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adr 541 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 541 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999974899899968744789999999999999999747989999909899-99986999
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=427.12 Aligned_cols=186 Identities=24% Similarity=0.262 Sum_probs=148.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.+++++++..+. ...|+++++.+++||+++|+|+||||||||+++|+|..++ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 94433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
.++|++|+......+||+|++.+..... ... ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHC----CCH--HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------5676140003454777999998755311----211--6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999999629976589489999999999999999999873-8988999915888899998640
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~-~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|++||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++|+.. ++...-|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDr 455 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADR 455 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999970899899969865799999999999999999738989999958899-99996899
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=422.09 Aligned_cols=184 Identities=25% Similarity=0.320 Sum_probs=146.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 89999599999457100013534674202224179994884999986999978999999969999980579999979508
Q 000872 675 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 754 (1245)
Q Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~ 754 (1245)
.++++|+++.+. . ..|+++++.+++||++||+|+||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEEEEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899930799989-------------9-899907441289989999889999999999999679989--9718998-----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 94433341899724887899999999999998702998898778999999999982994322222368888867978999
Q 000872 755 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 834 (1245)
Q Consensus 755 ~~~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 834 (1245)
...++|++|+....+.+||.|.+........ ..++.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -----7469998267767888859999986403688-------78999999999749915653994-----448999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999999629976589489999999999999999999873-8988999915888899998640
Q 000872 835 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 835 r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~-~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|+.. .+....|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~dr 471 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 471 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999972899899939801089999999999999999867989999939899-99996899
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=411.03 Aligned_cols=167 Identities=21% Similarity=0.287 Sum_probs=130.4
Q ss_pred CEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999837999995899979819-98999961259998991489876542289766554-6577889899999997622888
Q 000872 1 MTLLLGPPGSGKTTLMLALAG-KLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHD-IHIGEMTVRETLAFSARCQGVG 78 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL~~L~G-~~~~~~~~sG~V~inG~~~~~~~~~~~i~yv~Q~d-~l~~~lTVrEnL~f~~~l~~~~ 78 (1245)
+++|+||||||||||+++|+| .. +|.+... +..++|++|+. .+++.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i------------~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~-- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV------------DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG-- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS------------TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC--
T ss_conf 899999999879999999948986------------7976635---41699973564324557809999998--6127--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7630234511999851039982257899998831122123699999881973-334443368654346611001458999
Q 000872 79 SRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGE 157 (1245)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~-~~~~T~VG~~~~~~LSGGQKqRlsIAr 157 (1245)
. ...++.+++.+||. +..+..++ .||||||||++|||
T Consensus 524 --------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 524 --------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALAR 561 (986)
T ss_dssp --------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHH
T ss_pred --------H-----------------------------HHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHH
T ss_conf --------9-----------------------------99999999986998446439802-----07999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEE-EECCHHHH
Q ss_conf 98449707455279868375989999999999766159889999438984689620136883487288-86691049
Q 000872 158 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV-YQGPLEHV 233 (1245)
Q Consensus 158 aL~~~~~IllLDEpTSgLD~~s~~~I~~~L~~~~~~~~~t~iv~i~q~~~ei~~l~D~I~vL~~G~iv-~~G~~~~l 233 (1245)
|++.+|++++|||||++||+.++..+++.|+. .+++++.++|...++...+|++++|++|+++ +.|+.++.
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHCCEEEEEECCEEECCCCCHHHH
T ss_conf 99649999999797667999999999999986-----7998999979889999868999999799442677999999
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=406.22 Aligned_cols=198 Identities=22% Similarity=0.266 Sum_probs=135.9
Q ss_pred CEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----EEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9998379999958999---------------------798199899996----125999899148987654228976655
Q 000872 1 MTLLLGPPGSGKTTLM---------------------LALAGKLDSSLK----ASGKVTYNGHDMHEFVPQRTAAYISQH 55 (1245)
Q Consensus 1 ltaIlG~sGSGKSTLL---------------------~~L~G~~~~~~~----~sG~V~inG~~~~~~~~~~~i~yv~Q~ 55 (1245)
+++|+||||||||||+ +.+.|...|+.. ..|.+.++|.+.... .++.+++++|.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~ 124 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEI 124 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTC
T ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHHHCC-CHHCEEEEECH
T ss_conf 99998999999888715101232111000110024455530345677563213564157447201025-50000465112
Q ss_pred CCC-------------------CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 465-------------------7788989999999762288876302345119998510399822578999988311221
Q 000872 56 DIH-------------------IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEA 116 (1245)
Q Consensus 56 d~l-------------------~~~lTVrEnL~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 116 (1245)
..+ ++.+||+||+.+....... ....... ....++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~~--------------~~~~~~~ 179 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQIA--------------RLILREI 179 (670)
T ss_dssp C-------------------------CC---------------------------------------------------C
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHHH--------------HHHHHHH
T ss_conf 56677777531111234443334578599999975203643-----------1456778--------------8889999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2369999988197333-44433686543466110014589999844970--74552798683759899999999997661
Q 000872 117 NVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH--ALFMDEISTGLDSSTTFHIVNSLGQFNHI 193 (1245)
Q Consensus 117 ~~~~d~~l~~l~L~~~-~~T~VG~~~~~~LSGGQKqRlsIAraL~~~~~--IllLDEpTSgLD~~s~~~I~~~L~~~~~~ 193 (1245)
.+.. ..++.+||.+. .+..++ .||||||||++|||||+.+|+ +++|||||+|||+.++..+++.|+.++.
T Consensus 180 ~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 180 RDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf 9999-899975984344149700-----189999999999999962899878999798568999999999999999997-
Q ss_pred CCCEEEEEECCCCHHHHHHCCCEEEE------CCCCEEEECCHHHH
Q ss_conf 59889999438984689620136883------48728886691049
Q 000872 194 LNGTALISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 233 (1245)
Q Consensus 194 ~~~t~iv~i~q~~~ei~~l~D~I~vL------~~G~iv~~G~~~~l 233 (1245)
.+.+++.++|....+ ..+|++++| .+|++++.|+.+++
T Consensus 253 -~g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 253 -LGNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp -TTCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred -CCCEEEEEECCHHHH-HHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf -499899995787999-62998999446665669889974089998
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=400.86 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=135.5
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 0222417999488-----49999869999789999999699999805799999795089443334189972488789999
Q 000872 702 VLLNGVSGAFRPG-----VLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 776 (1245)
Q Consensus 702 ~~L~~vs~~i~~G-----~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~d~~~~~l 776 (1245)
.+++++++.+++| |+++|+|+||||||||+++|+|..++. +|+. .. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999987029988987789999999999829943222223688888679789999999999962997658948999
Q 000872 777 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 856 (1245)
Q Consensus 777 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts 856 (1245)
||+|.+... .+. ... ....++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 999999999999999987-38988999915888899998640
Q 000872 857 GLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 857 glD~~~~~~i~~~l~~~~-~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|||..+...+.+.|+++. +.|.|||+++|+.. ++...-|+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDr 537 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADK 537 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 899999999999999999757998999968899-99986899
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=327.63 Aligned_cols=198 Identities=25% Similarity=0.369 Sum_probs=161.7
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 08999959999945710001353467420222417999488499998699997899999996999998057999997950
Q 000872 674 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 753 (1245)
Q Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl~~L~g~~~~~~~~G~i~~~g~~ 753 (1245)
..++|+|++++++.. ..+++|+|+|+.++||+++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCC--CCCCCCCCCCC
T ss_conf 767999855407999----------987433331886228827899805898577888875456516--44861579965
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 894---43334189972488789999999999999870299889877899999999998299-------43222223688
Q 000872 754 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLP 823 (1245)
Q Consensus 754 ~~~---~~~~~~~~yv~q~d~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~ 823 (1245)
.+. ..+++.++||+|+..++. -|++||+.|+. .+.+. +.+.++.+..++ .+-.+|.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 011259998504666587533207-86167886415-----52209----999999987565468870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 88867978999999999996299765894899999999999999999998738988999915888899998640
Q 000872 824 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 897 (1245)
Q Consensus 824 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~~~i~~~fd~ 897 (1245)
|. .||||||||++|||+++++|+|++||||||+||+.++..+++.|+++. +|+|+|+++|+++ .....|+
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~ 621 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADL 621 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSE
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCE
T ss_conf 88-777778799999998725999899845544688789999999999984-7988999736387--8986898
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=320.21 Aligned_cols=174 Identities=27% Similarity=0.387 Sum_probs=125.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC-CC---EEE------EEEEECCEECCCCC----
Q ss_conf 022241799948849999869999789999---------99969999-98---057------99999795089443----
Q 000872 702 VLLNGVSGAFRPGVLTALMGVTGSGKTTLM---------DVLAGRKT-RG---YIT------GNITISGYPKNQET---- 758 (1245)
Q Consensus 702 ~~L~~vs~~i~~G~~~ai~G~sGsGKsTLl---------~~L~g~~~-~~---~~~------G~i~~~g~~~~~~~---- 758 (1245)
..|+|+|+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------3341899724887899------------------------
Q 000872 759 ----------------------------------------FTRISGYCEQNDIHSP------------------------ 774 (1245)
Q Consensus 759 ----------------------------------------~~~~~~yv~q~d~~~~------------------------ 774 (1245)
..+..|++.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999999999998702998898778999999999982994322222368888867978999999999996299
Q 000872 775 --------YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP 846 (1245)
Q Consensus 775 --------~ltv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p 846 (1245)
.+||.|++.|.... ....++.++++.+||.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf ---765894899999999999999999998738988999915888
Q 000872 847 ---SIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 888 (1245)
Q Consensus 847 ---~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~h~p~ 888 (1245)
++++|||||+|||..+...+++.|+++.+.|.|||+++|+..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 889789997988899999999999999999966998999937999
Done!