Query 000873
Match_columns 1245
No_of_seqs 441 out of 1866
Neff 5.3
Searched_HMMs 46136
Date Tue Apr 2 00:34:17 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4692 Predicted E3 ubiquitin 100.0 6.1E-78 1.3E-82 656.2 27.8 387 845-1238 2-470 (489)
2 COG5113 UFD2 Ubiquitin fusion 100.0 8.3E-53 1.8E-57 484.1 31.0 448 751-1239 374-906 (929)
3 PF10408 Ufd2P_core: Ubiquitin 100.0 2.3E-51 5E-56 504.3 36.0 369 749-1170 172-629 (629)
4 KOG2042 Ubiquitin fusion degra 100.0 1.1E-51 2.5E-56 504.0 27.5 456 752-1236 400-917 (943)
5 KOG0349 Putative DEAD-box RNA 100.0 1.6E-30 3.4E-35 292.2 12.7 222 46-285 30-264 (725)
6 KOG2626 Histone H3 (Lys4) meth 99.9 2.4E-27 5.2E-32 274.3 14.1 194 104-306 288-532 (544)
7 smart00449 SPRY Domain in SPla 99.9 9.3E-21 2E-25 185.6 15.3 118 146-266 1-121 (122)
8 PF00622 SPRY: SPRY domain; I 99.8 8.8E-21 1.9E-25 185.2 14.2 120 146-268 1-124 (124)
9 KOG4030 Uncharacterized conser 99.7 1E-15 2.2E-20 153.8 16.5 160 107-279 27-190 (197)
10 KOG2243 Ca2+ release channel ( 99.7 1.8E-16 3.9E-21 190.4 10.9 158 140-302 1099-1272(5019)
11 KOG2242 Scaffold/matrix specif 99.6 1.1E-16 2.3E-21 193.6 -1.0 545 182-784 8-555 (558)
12 KOG3953 SOCS box protein SSB-1 99.5 4.7E-13 1E-17 143.4 14.1 164 109-279 27-208 (242)
13 KOG4367 Predicted Zn-finger pr 99.4 5.8E-13 1.3E-17 150.8 13.3 153 108-267 534-695 (699)
14 KOG2243 Ca2+ release channel ( 99.3 2.1E-12 4.6E-17 156.4 3.2 151 124-279 645-828 (5019)
15 PF13920 zf-C3HC4_3: Zinc fing 99.0 3.1E-10 6.7E-15 96.1 3.1 49 1189-1237 1-50 (50)
16 PLN03208 E3 ubiquitin-protein 98.9 4.4E-10 9.6E-15 119.3 3.7 63 1181-1243 9-89 (193)
17 PF04564 U-box: U-box domain; 98.9 1E-09 2.2E-14 100.3 3.8 50 1187-1236 1-51 (73)
18 smart00504 Ubox Modified RING 98.8 2E-09 4.3E-14 94.6 3.9 46 1190-1235 1-46 (63)
19 PF15227 zf-C3HC4_4: zinc fing 98.8 3.7E-09 8E-14 86.9 3.2 38 1193-1230 1-42 (42)
20 KOG0823 Predicted E3 ubiquitin 98.7 7.1E-09 1.5E-13 112.0 3.2 56 1187-1242 44-104 (230)
21 KOG1477 SPRY domain-containing 98.7 3.2E-08 7E-13 118.7 8.8 161 108-275 31-212 (469)
22 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.3E-08 2.9E-13 81.9 2.7 38 1193-1230 1-39 (39)
23 PHA02929 N1R/p28-like protein; 98.6 2.9E-08 6.3E-13 109.5 4.1 52 1188-1239 172-231 (238)
24 KOG0317 Predicted E3 ubiquitin 98.6 2.2E-08 4.8E-13 111.0 2.8 49 1189-1237 238-286 (293)
25 PF13639 zf-RING_2: Ring finge 98.5 5.4E-08 1.2E-12 80.3 1.8 40 1192-1231 2-44 (44)
26 KOG4172 Predicted E3 ubiquitin 98.5 2.3E-08 5E-13 85.1 -0.6 52 1191-1242 8-61 (62)
27 TIGR00599 rad18 DNA repair pro 98.4 1.1E-07 2.5E-12 111.5 3.7 52 1185-1236 21-72 (397)
28 PF00097 zf-C3HC4: Zinc finger 98.2 6.1E-07 1.3E-11 72.7 2.8 38 1193-1230 1-41 (41)
29 PHA02926 zinc finger-like prot 98.2 5.5E-07 1.2E-11 97.0 3.0 52 1188-1239 168-234 (242)
30 KOG0320 Predicted E3 ubiquitin 98.2 5.8E-07 1.3E-11 93.9 2.4 47 1190-1236 131-179 (187)
31 cd00162 RING RING-finger (Real 98.2 1.4E-06 3E-11 70.1 3.4 43 1192-1234 1-45 (45)
32 COG5432 RAD18 RING-finger-cont 98.1 8.2E-07 1.8E-11 98.0 2.0 47 1191-1237 26-72 (391)
33 KOG0287 Postreplication repair 98.1 8.8E-07 1.9E-11 99.5 1.7 47 1191-1237 24-70 (442)
34 smart00184 RING Ring finger. E 98.1 3.4E-06 7.4E-11 65.5 3.3 38 1193-1230 1-39 (39)
35 PF14634 zf-RING_5: zinc-RING 98.0 4.2E-06 9.2E-11 69.3 3.1 41 1192-1232 1-44 (44)
36 KOG4265 Predicted E3 ubiquitin 98.0 3.1E-06 6.7E-11 96.9 3.1 55 1189-1243 289-344 (349)
37 PF13445 zf-RING_UBOX: RING-ty 98.0 2.7E-06 5.9E-11 70.5 1.8 35 1193-1228 1-43 (43)
38 KOG2177 Predicted E3 ubiquitin 98.0 2.4E-06 5.2E-11 93.5 1.6 46 1187-1232 10-55 (386)
39 COG5243 HRD1 HRD ubiquitin lig 98.0 6.8E-06 1.5E-10 93.5 5.2 48 1187-1234 284-344 (491)
40 COG5574 PEX10 RING-finger-cont 97.9 3.9E-06 8.5E-11 92.5 2.2 47 1189-1235 214-262 (271)
41 KOG4275 Predicted E3 ubiquitin 97.8 2.9E-06 6.3E-11 94.0 -0.9 48 1190-1241 300-348 (350)
42 KOG2164 Predicted E3 ubiquitin 97.8 8.3E-06 1.8E-10 96.8 2.6 53 1190-1242 186-245 (513)
43 KOG0824 Predicted E3 ubiquitin 97.8 8.8E-06 1.9E-10 91.0 1.8 49 1190-1238 7-56 (324)
44 PF12678 zf-rbx1: RING-H2 zinc 97.8 2E-05 4.3E-10 72.4 3.7 42 1190-1231 19-73 (73)
45 PF14835 zf-RING_6: zf-RING of 97.7 1.1E-05 2.4E-10 71.8 0.5 45 1191-1237 8-55 (65)
46 KOG1477 SPRY domain-containing 97.6 1.2E-05 2.6E-10 97.0 -0.0 87 185-276 1-90 (469)
47 KOG0802 E3 ubiquitin ligase [P 97.6 2.5E-05 5.4E-10 96.5 1.6 46 1188-1233 289-339 (543)
48 KOG0978 E3 ubiquitin ligase in 97.5 1.6E-05 3.5E-10 98.3 -0.6 51 1191-1241 644-697 (698)
49 KOG4159 Predicted E3 ubiquitin 97.5 4.3E-05 9.3E-10 90.3 2.6 52 1185-1236 79-130 (398)
50 KOG4628 Predicted E3 ubiquitin 97.3 0.0002 4.3E-09 83.0 3.8 48 1191-1238 230-281 (348)
51 KOG0311 Predicted E3 ubiquitin 97.2 5E-05 1.1E-09 86.7 -1.5 52 1188-1239 41-94 (381)
52 KOG1785 Tyrosine kinase negati 97.2 0.00013 2.8E-09 83.8 1.5 48 1191-1238 370-419 (563)
53 COG5540 RING-finger-containing 97.1 0.00025 5.5E-09 79.5 3.0 45 1191-1235 324-372 (374)
54 KOG1571 Predicted E3 ubiquitin 97.1 0.00019 4.1E-09 82.6 1.8 52 1186-1241 301-353 (355)
55 KOG2660 Locus-specific chromos 96.9 0.00021 4.6E-09 81.3 -0.0 52 1188-1239 13-65 (331)
56 KOG2879 Predicted E3 ubiquitin 96.9 0.00068 1.5E-08 75.5 3.6 54 1185-1238 234-290 (298)
57 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0012 2.5E-08 62.5 3.3 32 1204-1235 48-82 (85)
58 KOG1039 Predicted E3 ubiquitin 96.7 0.00084 1.8E-08 78.2 2.3 53 1188-1240 159-226 (344)
59 COG5222 Uncharacterized conser 96.5 0.0023 5E-08 71.6 4.0 76 1154-1232 241-318 (427)
60 KOG0297 TNF receptor-associate 96.4 0.0017 3.6E-08 77.5 2.4 53 1187-1239 18-71 (391)
61 COG5236 Uncharacterized conser 96.1 0.0038 8.3E-08 71.1 3.1 53 1186-1238 57-111 (493)
62 PF11789 zf-Nse: Zinc-finger o 96.1 0.0039 8.5E-08 55.0 2.5 42 1188-1229 9-53 (57)
63 TIGR00570 cdk7 CDK-activating 96.0 0.0042 9.1E-08 71.3 2.9 30 1207-1236 25-55 (309)
64 PF14447 Prok-RING_4: Prokaryo 95.6 0.0045 9.8E-08 53.9 0.9 47 1189-1237 6-52 (55)
65 KOG1813 Predicted E3 ubiquitin 95.3 0.0068 1.5E-07 68.5 1.1 48 1190-1237 241-288 (313)
66 KOG2242 Scaffold/matrix specif 95.2 0.0043 9.4E-08 76.8 -0.8 141 134-279 68-226 (558)
67 COG5152 Uncharacterized conser 95.1 0.01 2.2E-07 63.4 1.7 44 1190-1233 196-239 (259)
68 KOG1734 Predicted RING-contain 94.8 0.0095 2.1E-07 66.4 0.8 48 1189-1236 223-282 (328)
69 KOG0825 PHD Zn-finger protein 94.7 0.0078 1.7E-07 74.5 -0.3 52 1190-1241 123-177 (1134)
70 PF04641 Rtf2: Rtf2 RING-finge 94.6 0.033 7.1E-07 63.2 4.4 57 1187-1244 110-172 (260)
71 KOG1002 Nucleotide excision re 94.3 0.017 3.6E-07 69.1 1.0 48 1188-1235 534-586 (791)
72 PF14570 zf-RING_4: RING/Ubox 94.1 0.035 7.7E-07 47.4 2.3 43 1193-1235 1-48 (48)
73 KOG0828 Predicted E3 ubiquitin 93.9 0.029 6.2E-07 66.9 1.9 48 1189-1236 570-635 (636)
74 KOG3039 Uncharacterized conser 93.6 0.046 1E-06 60.4 2.8 50 1188-1237 219-272 (303)
75 KOG1001 Helicase-like transcri 93.4 0.032 6.9E-07 70.8 1.4 45 1191-1236 455-501 (674)
76 KOG0804 Cytoplasmic Zn-finger 93.4 0.034 7.4E-07 65.9 1.4 44 1190-1235 175-222 (493)
77 COG5219 Uncharacterized conser 92.9 0.035 7.7E-07 70.1 0.7 46 1191-1236 1470-1524(1525)
78 PF11793 FANCL_C: FANCL C-term 92.6 0.047 1E-06 50.1 0.8 46 1190-1235 2-66 (70)
79 PF05883 Baculo_RING: Baculovi 92.0 0.075 1.6E-06 54.4 1.6 45 1190-1234 26-79 (134)
80 COG5194 APC11 Component of SCF 91.5 0.17 3.7E-06 47.4 3.1 45 1191-1235 32-81 (88)
81 smart00744 RINGv The RING-vari 91.2 0.17 3.7E-06 43.3 2.7 40 1192-1231 1-49 (49)
82 KOG0826 Predicted E3 ubiquitin 90.8 0.15 3.2E-06 58.7 2.5 46 1188-1233 298-344 (357)
83 KOG1814 Predicted E3 ubiquitin 90.7 0.3 6.5E-06 57.8 4.8 33 1189-1221 183-218 (445)
84 COG5175 MOT2 Transcriptional r 90.1 0.16 3.4E-06 58.4 2.0 48 1189-1236 13-65 (480)
85 KOG1100 Predicted E3 ubiquitin 90.1 0.14 3.1E-06 56.4 1.5 44 1193-1240 161-205 (207)
86 KOG2932 E3 ubiquitin ligase in 89.9 0.1 2.2E-06 59.5 0.2 34 1204-1239 105-138 (389)
87 KOG2817 Predicted E3 ubiquitin 89.4 0.24 5.2E-06 58.5 2.8 43 1191-1233 335-383 (394)
88 KOG3002 Zn finger protein [Gen 85.7 0.5 1.1E-05 54.8 2.5 47 1189-1238 47-94 (299)
89 KOG3161 Predicted E3 ubiquitin 84.6 0.37 8E-06 59.5 0.8 36 1191-1228 12-51 (861)
90 KOG4185 Predicted E3 ubiquitin 83.0 0.65 1.4E-05 53.3 2.0 34 1201-1234 20-54 (296)
91 PF05290 Baculo_IE-1: Baculovi 83.0 2.3 4.9E-05 43.8 5.5 76 1158-1237 52-134 (140)
92 PF10367 Vps39_2: Vacuolar sor 82.5 1.5 3.2E-05 42.4 3.9 34 1186-1219 74-109 (109)
93 PF13765 PRY: SPRY-associated 81.5 1.4 3E-05 37.6 2.9 23 109-131 1-23 (49)
94 PF10272 Tmpp129: Putative tra 76.0 3.9 8.5E-05 48.7 5.4 69 1161-1233 245-349 (358)
95 KOG1493 Anaphase-promoting com 73.2 1.4 3E-05 41.2 0.6 29 1207-1235 50-81 (84)
96 KOG2068 MOT2 transcription fac 72.9 2.2 4.9E-05 49.7 2.3 46 1191-1236 250-299 (327)
97 COG5220 TFB3 Cdk activating ki 71.7 1.2 2.5E-05 49.6 -0.3 45 1189-1233 9-62 (314)
98 KOG1428 Inhibitor of type V ad 71.4 2.4 5.1E-05 56.5 2.2 49 1189-1237 3485-3546(3738)
99 KOG3113 Uncharacterized conser 71.3 2.8 6.2E-05 47.1 2.6 56 1188-1245 109-170 (293)
100 KOG2930 SCF ubiquitin ligase, 70.7 2.4 5.2E-05 41.8 1.6 28 1206-1233 79-106 (114)
101 KOG4362 Transcriptional regula 68.5 1.5 3.2E-05 55.6 -0.4 46 1191-1236 22-70 (684)
102 PF02891 zf-MIZ: MIZ/SP-RING z 67.1 4.5 9.6E-05 35.0 2.4 43 1191-1233 3-50 (50)
103 KOG1941 Acetylcholine receptor 66.7 2.3 5.1E-05 50.2 0.8 48 1190-1237 365-418 (518)
104 smart00588 NEUZ domain in neur 63.8 1.1E+02 0.0023 31.4 11.9 97 116-228 9-123 (123)
105 PLN02189 cellulose synthase 63.7 5.3 0.00011 53.0 3.2 49 1190-1238 34-90 (1040)
106 KOG3039 Uncharacterized conser 63.5 4.1 8.8E-05 45.7 1.8 35 1189-1223 42-76 (303)
107 COG5109 Uncharacterized conser 61.4 4.9 0.00011 46.5 2.0 42 1191-1232 337-384 (396)
108 KOG2113 Predicted RNA binding 60.9 6.5 0.00014 45.5 2.8 50 1191-1242 344-394 (394)
109 KOG2114 Vacuolar assembly/sort 60.2 10 0.00022 49.1 4.7 81 1156-1239 805-887 (933)
110 KOG0298 DEAD box-containing he 58.3 3 6.5E-05 55.7 -0.3 47 1189-1235 1152-1199(1394)
111 KOG0827 Predicted E3 ubiquitin 57.0 5.5 0.00012 47.3 1.5 25 1207-1231 25-52 (465)
112 PF07800 DUF1644: Protein of u 56.9 5.6 0.00012 42.2 1.4 21 1189-1209 1-21 (162)
113 KOG3800 Predicted E3 ubiquitin 55.7 6.7 0.00015 45.1 1.9 29 1207-1235 22-51 (300)
114 KOG3799 Rab3 effector RIM1 and 55.6 9 0.0002 39.5 2.6 42 1188-1233 63-116 (169)
115 KOG2034 Vacuolar sorting prote 55.6 14 0.00031 48.2 4.8 35 1188-1222 815-851 (911)
116 KOG3842 Adaptor protein Pellin 54.5 10 0.00022 43.9 3.1 49 1188-1236 339-415 (429)
117 smart00589 PRY associated with 53.6 14 0.00031 30.9 3.2 25 108-132 3-27 (52)
118 KOG0825 PHD Zn-finger protein 53.3 6.7 0.00014 50.0 1.5 52 1188-1239 94-158 (1134)
119 KOG4642 Chaperone-dependent E3 50.8 17 0.00038 41.3 4.0 54 1185-1238 206-260 (284)
120 PHA03096 p28-like protein; Pro 50.3 6.9 0.00015 45.4 0.9 47 1191-1237 179-239 (284)
121 PF14569 zf-UDP: Zinc-binding 49.6 15 0.00033 34.8 2.8 50 1189-1238 8-65 (80)
122 PHA02825 LAP/PHD finger-like p 49.4 16 0.00035 38.9 3.3 50 1187-1237 5-61 (162)
123 KOG4185 Predicted E3 ubiquitin 48.6 7 0.00015 45.0 0.7 44 1190-1233 207-265 (296)
124 PLN02436 cellulose synthase A 48.4 12 0.00027 49.8 2.8 49 1190-1238 36-92 (1094)
125 KOG1812 Predicted E3 ubiquitin 47.9 10 0.00022 45.8 1.8 33 1190-1222 146-182 (384)
126 PF07177 Neuralized: Neuralize 45.2 77 0.0017 29.3 6.7 53 115-168 8-67 (69)
127 PHA02862 5L protein; Provision 40.4 22 0.00047 37.4 2.6 44 1191-1235 3-53 (156)
128 KOG1940 Zn-finger protein [Gen 40.3 17 0.00036 42.1 2.0 47 1190-1237 158-208 (276)
129 PF04216 FdhE: Protein involve 39.7 8 0.00017 44.7 -0.7 44 1190-1233 172-220 (290)
130 KOG3579 Predicted E3 ubiquitin 39.6 11 0.00024 43.2 0.4 33 1190-1222 268-304 (352)
131 PLN02400 cellulose synthase 39.6 17 0.00036 48.8 2.1 48 1190-1237 36-91 (1085)
132 PLN02638 cellulose synthase A 38.2 22 0.00048 47.7 2.8 48 1190-1237 17-72 (1079)
133 KOG1815 Predicted E3 ubiquitin 37.8 19 0.0004 44.3 2.0 36 1188-1223 68-104 (444)
134 KOG3268 Predicted E3 ubiquitin 34.0 24 0.00052 38.1 1.8 45 1191-1235 166-228 (234)
135 PF03854 zf-P11: P-11 zinc fin 32.5 21 0.00046 30.9 0.9 42 1193-1236 5-47 (50)
136 KOG1645 RING-finger-containing 30.7 30 0.00066 41.7 2.1 41 1193-1233 12-54 (463)
137 PF05605 zf-Di19: Drought indu 30.0 24 0.00052 30.6 0.9 40 1189-1235 1-42 (54)
138 PRK03564 formate dehydrogenase 29.3 23 0.0005 41.7 0.8 45 1189-1233 186-235 (309)
139 KOG4445 Uncharacterized conser 28.8 17 0.00037 42.1 -0.3 48 1189-1236 114-187 (368)
140 TIGR01562 FdhE formate dehydro 27.2 18 0.00038 42.5 -0.6 44 1190-1233 184-233 (305)
141 PF10408 Ufd2P_core: Ubiquitin 27.0 8.6E+02 0.019 31.5 14.2 83 480-569 29-115 (629)
142 PF12906 RINGv: RING-variant d 25.6 42 0.00092 28.6 1.6 38 1193-1230 1-47 (47)
143 PF10395 Utp8: Utp8 family; I 25.1 4.7E+02 0.01 34.2 11.1 98 958-1067 517-620 (670)
144 PLN02915 cellulose synthase A 24.4 53 0.0011 44.2 2.9 49 1189-1237 14-70 (1044)
145 PF04710 Pellino: Pellino; In 24.4 25 0.00055 42.3 0.0 8 225-232 181-188 (416)
146 KOG0212 Uncharacterized conser 24.1 4.5E+02 0.0097 33.7 10.2 47 961-1007 360-406 (675)
147 PF07191 zinc-ribbons_6: zinc- 23.7 9.9 0.00021 35.3 -2.7 44 1190-1238 1-44 (70)
148 PLN02195 cellulose synthase A 23.3 62 0.0013 43.3 3.1 46 1190-1236 6-60 (977)
149 KOG4218 Nuclear hormone recept 21.6 53 0.0011 38.8 1.8 15 1188-1202 13-27 (475)
150 PF00957 Synaptobrevin: Synapt 21.0 4E+02 0.0087 25.2 7.4 28 801-828 38-65 (89)
151 PF10146 zf-C4H2: Zinc finger- 20.8 57 0.0012 37.0 1.9 24 1211-1234 195-218 (230)
152 PF08569 Mo25: Mo25-like; Int 20.6 1.5E+03 0.033 27.2 13.6 153 813-1008 34-194 (335)
No 1
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-78 Score=656.22 Aligned_cols=387 Identities=44% Similarity=0.746 Sum_probs=345.0
Q ss_pred HHHHHH----hhccCCCCCccccchHHHHHH------------------------------HHHHHhhhccCCcccChhh
Q 000873 845 VWVVQL----LLVLSKVDSVFIYIPEFYLEA------------------------------LVTFVVTHFNDPRISSADL 890 (1245)
Q Consensus 845 ~WLlrl----~~~~s~~~~~F~~lPEfylE~------------------------------iv~Fl~~~~~~p~I~~~~~ 890 (1245)
+||++. +..+++++++|+|+||+|+.+ .++||..|++||||+.+++
T Consensus 2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~ 81 (489)
T KOG4692|consen 2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC 81 (489)
T ss_pred hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence 488775 456899999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHHHhcChhhHHHhhcC-HHHHHhhHHHhhccccCCCcccchhHHhhhccccCCccCcCCC------------
Q 000873 891 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGE------------ 957 (1245)
Q Consensus 891 ~d~lvq~l~~~l~~~~~i~~fe~n-~~~~~~Lv~aLl~~y~~R~wi~~~~iLlrl~~g~gFa~rk~~~------------ 957 (1245)
||.|+|++.+++|+|..++++|+. +..|+.||++||++|+||.|||+||||+|+|+|+||+|++++.
T Consensus 82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~ 161 (489)
T KOG4692|consen 82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET 161 (489)
T ss_pred HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence 999999999999999999999999 6899999999999999999999999999999999999985542
Q ss_pred -----CCCCcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhH------HHhhhhhhHHHhH
Q 000873 958 -----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1026 (1245)
Q Consensus 958 -----~~~~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~~~~~e------~qqr~c~s~f~Ls 1026 (1245)
..|||++||++++..+.+|+++...|+|++||++||+|+||+.++||||++.|..| +|+|+|.+||+|+
T Consensus 162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs 241 (489)
T KOG4692|consen 162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS 241 (489)
T ss_pred cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence 35699999999999999999999999999999999999999999999999877655 8899999999999
Q ss_pred HHHHHHHHHHhhhcccccCCC----hhhHHHHHHHHHHHHHhhhcCCcccccchhccccccCCccccCchhhhhhHHHHH
Q 000873 1027 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1102 (1245)
Q Consensus 1027 ~~t~r~Le~~T~~ip~~F~~p----~~~iv~RLa~MLnynL~~l~~~~~~~~~~~~lk~~~~~~ek~~~~~lL~~i~gIy 1102 (1245)
++++|+|||.++.+|++|++. ++.+++||+++||++|++++.++ ++|+..|+..+|++|||+|++||++++||+
T Consensus 242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~--~lf~rvv~~~~~~le~V~hypil~a~~GIl 319 (489)
T KOG4692|consen 242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEF--FLFVRVVRRQGQPLEKVSHYPILAALVGIL 319 (489)
T ss_pred HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhcccc--chhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence 999999999999999999964 68899999999999999999876 488888999999999999999999999999
Q ss_pred HHhcccccccccCcccceeeeeeccCCCchhhhhHHHHHhhccc---------------cC-----cCCCCCHHHHHHHH
Q 000873 1103 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWA---------------GS-----FRGDTYLSKLGQLE 1162 (1245)
Q Consensus 1103 LnL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~---------------~~-----~~~~~~~~~i~~l~ 1162 (1245)
|||+..+...+.+.+.+++..+|+.|+|+|+..+|+|+++++|. ++ +.+.++..++.+++
T Consensus 320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~~s~~e~~~V~ 399 (489)
T KOG4692|consen 320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQLSNFESHLVN 399 (489)
T ss_pred HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhhhhHHHHHHHH
Confidence 99999998887777766655666678899999999999999874 11 23455667777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcccccccc
Q 000873 1163 CFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1163 ~~~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~ 1238 (1245)
++.+.+.+++.+.... + -.+.+|.+|||||.-+.++|+.||||..|+.||.+|++|++.|+||++++.+|+
T Consensus 400 r~~~~l~~~~~~~~~~----~-lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 400 RASSQLPERKEESFNK----D-LPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred HHHhhcchhhHHhhcC----C-CCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 7777777665543322 2 223578999999999999999999999999999999999999999999998854
No 2
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-53 Score=484.11 Aligned_cols=448 Identities=18% Similarity=0.147 Sum_probs=353.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHhhhHHHHHHHHh
Q 000873 751 EEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE--------RACSEQLKRLKEARNNYREEVIDCVR 822 (1245)
Q Consensus 751 ~~elld~~~~lyhl~~~~~~~~~~~~~~~~~~~~~~l~et~~~i~~--------~~~~~~~~~~k~~~~~~~e~l~~~aR 822 (1245)
++++++.-+..-|+||...|..-. .+-++|+.|+|-=+...+ .+-..++.|+.++.|. ++.
T Consensus 374 ISD~FFl~lt~~HyGv~~tf~~~e----k~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~-----~~S-- 442 (929)
T COG5113 374 ISDIFFLYLTKIHYGVNATFTSCE----KFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKG-----IDS-- 442 (929)
T ss_pred chhhHHhHHHHHHhccchhHHHHH----HHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhh-----hHH--
Confidence 568999999999999999886554 345666655554333322 2223444444433332 222
Q ss_pred hhhhHhhhhccHhHHhhhH----HHHHHHHHHhhc-------------cCCCCCccccchHHHHHH--------------
Q 000873 823 HCAWYRISLFSRWKQRGMY----ATCVWVVQLLLV-------------LSKVDSVFIYIPEFYLEA-------------- 871 (1245)
Q Consensus 823 ~~aw~r~~lf~~~~q~~~~----~~~~WLlrl~~~-------------~s~~~~~F~~lPEfylE~-------------- 871 (1245)
.+..+++.+|-+..|.+.+ +++.||.||.++ ..++|.+|+|+|||+||+
T Consensus 443 ~~~al~gfl~~tsl~~~~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~S 522 (929)
T COG5113 443 KMSALNGFLFMTSLFADEFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRS 522 (929)
T ss_pred HHHHHHHHHHHhhhhhhccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccC
Confidence 2334788899999999888 799999999984 157999999999999999
Q ss_pred ---------HHHHHhhhccCCc-ccChhhHHHHHHHHHH----Hhc-Chhh-HHHhhcCHHHHHhhHHHhhccccCC-Cc
Q 000873 872 ---------LVTFVVTHFNDPR-ISSADLRDLLLQSISV----LVQ-YKDY-LAAFESNEAATLRLPKALISAFDNR-SW 934 (1245)
Q Consensus 872 ---------iv~Fl~~~~~~p~-I~~~~~~d~lvq~l~~----~l~-~~~~-i~~fe~n~~~~~~Lv~aLl~~y~~R-~w 934 (1245)
+++|++..+.+|. |.||.++..|.+.++. +.. ++.. +++|+..+.+..+|++|||+||... ..
T Consensus 523 pif~~~L~~l~Ef~~~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsT 602 (929)
T COG5113 523 PIFKKELEPLCEFVKIVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIEST 602 (929)
T ss_pred chhhccccchhhhhhhhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeecc
Confidence 4456665556664 7788888888888876 333 3434 3899999999999999999999631 22
Q ss_pred ccchhHHhhhccccCCccCcCC----CCCCCcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 000873 935 IPVTNILLRLCKGHGFGSSKHG----ESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQ 1010 (1245)
Q Consensus 935 i~~~~iLlrl~~g~gFa~rk~~----~~~~~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~~~ 1010 (1245)
++++.. + ++|+.|-.. .-.+.-|.|.++|.++..+|-+||++|..+|+||++++|||.+..+.|+|+.|.
T Consensus 603 GqStqf----y--dkfNirf~ic~~~~~~yK~Psy~~~L~~~~~tN~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs 676 (929)
T COG5113 603 GQSTQF----Y--DKFNIRFIICMMKDFEYKQPSYSEGLSSIKDTNLPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQS 676 (929)
T ss_pred Ccccce----e--eeccceeehhHHHHHHhcCchhhhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 222111 1 344443111 012267889999999999999999999999999999999999999999999654
Q ss_pred h--------------hHHH------hhhhhhHHHhHHHHHHHHHHHhhhcccccCCChhhHHHHHHHHHHHHHhhhcCCc
Q 000873 1011 V--------------SEFQ------QKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAA 1070 (1245)
Q Consensus 1011 ~--------------~e~q------qr~c~s~f~Ls~~t~r~Le~~T~~ip~~F~~p~~~iv~RLa~MLnynL~~l~~~~ 1070 (1245)
. .|.| .|+++++++|+++++.||+.+++++|++|+.+| ||.|||.||||||+.+|| |
T Consensus 677 ~Lad~~s~sn~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~E--iV~rla~mLNyNL~~l~G-P 753 (929)
T COG5113 677 LLADAISNSNISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDE--IVSRLARMLNYNLKILTG-P 753 (929)
T ss_pred HHHhhhccCchhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHH--HHHHHHHHHhCcchhccC-C
Confidence 1 2333 588999999999999999999999999999996 999999999999999996 5
Q ss_pred ccccchhccccccCCccc--cCchhhhhhHHHHHHHhcccccccccCcccceeeeeeccCCCchhhhhHHHHHhhccccC
Q 000873 1071 DAEFFDLSLRRHGQSLEK--VNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGS 1148 (1245)
Q Consensus 1071 ~~~~~~~~lk~~~~~~ek--~~~~~lL~~i~gIyLnL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~~~ 1148 (1245)
||. ++|++ +|++ ||++.||..+++||+||..+++| +.|||+ |.|||.+..|..+++|...+
T Consensus 754 KC~--~LkVk----dP~~Y~FnaK~LL~~~~~VYinl~~es~F---------veaVA~-D~rsf~~~~F~rA~~I~~~k- 816 (929)
T COG5113 754 KCT--DLKVK----DPEQYGFNAKNLLRRMVMVYINLRSESKF---------VEAVAS-DKRSFDIDFFRRALRICENK- 816 (929)
T ss_pred Ccc--ceeec----ChhhcCCCHHHHHHHHHHHhhhhcchHHH---------HHHHHc-ccccccHHHHHHHHHHHhcc-
Confidence 554 44555 5566 69999999999999999999999 689995 99999999999999997543
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeCCCCc-ccHHHHHHhhcCCCCC
Q 000873 1149 FRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRC 1227 (1245)
Q Consensus 1149 ~~~~~~~~~i~~l~~~~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~~~~C 1227 (1245)
.++++++|++++.|+.+++++..++..|+. +++|.||+|++|+|++.|+|||.||-+.. ..+++|+.|++++.++
T Consensus 817 --~L~s~~~IE~l~~f~nr~E~~r~~ea~EeE--D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tD 892 (929)
T COG5113 817 --YLISESQIEELRSFINRLEKVRVIEAVEEE--DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTD 892 (929)
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHHHHhhhhh--hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCC
Confidence 589999999999999999998866555554 47999999999999999999999997776 5779999999999999
Q ss_pred CCCcccc--ccccc
Q 000873 1228 FFCNATV--LEVVK 1239 (1245)
Q Consensus 1228 P~CR~~i--~~v~~ 1239 (1245)
||+|.|+ ++|++
T Consensus 893 PFNRmPLtlddVtp 906 (929)
T COG5113 893 PFNRMPLTLDDVTP 906 (929)
T ss_pred ccccCCCchhhcCC
Confidence 9999994 56654
No 3
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=2.3e-51 Score=504.30 Aligned_cols=369 Identities=20% Similarity=0.256 Sum_probs=293.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHhhhhhHh
Q 000873 749 LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYR 828 (1245)
Q Consensus 749 ~~~~elld~~~~lyhl~~~~~~~~~~~~~~~~~~~~~~l~et~~~i~~~~~~~~~~~~k~~~~~~~e~l~~~aR~~aw~r 828 (1245)
+=++|+|...+..-|+|+++.++++....+++.++++.+++.+++ + ..+..++++..+.+....++
T Consensus 172 nFiTe~FFLT~~a~hlg~~~~~~~~~~~~r~l~~lq~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~e 237 (629)
T PF10408_consen 172 NFITECFFLTLRALHLGLLPAIQRYKRLLRELRRLQRELEELEAS-------A-------QLKRLKEQLDKLMSEKLSLE 237 (629)
T ss_dssp -HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTT--------H-------HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------H-------HHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999998888655 3 34445566777777778889
Q ss_pred hhhccHhHHhhhH----HHHHHHHHHhhc--------------cCCCCCccccchHHHHHHHHHHHhh-hcc--CCcccC
Q 000873 829 ISLFSRWKQRGMY----ATCVWVVQLLLV--------------LSKVDSVFIYIPEFYLEALVTFVVT-HFN--DPRISS 887 (1245)
Q Consensus 829 ~~lf~~~~q~~~~----~~~~WLlrl~~~--------------~s~~~~~F~~lPEfylE~iv~Fl~~-~~~--~p~I~~ 887 (1245)
+.++++..+..++ .++.||+|++++ ++++|+.|+++|||+||||++|+.+ ..+ +|.++.
T Consensus 238 ~~L~~p~~~~~~~~F~~~~~~wL~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~~~l~ 317 (629)
T PF10408_consen 238 AVLLDPDFLSRCLQFYNFVAQWLLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSPDLLS 317 (629)
T ss_dssp HHHT-HHHHHHHHHHHHHHHHHHHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT-
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 9999999998887 799999999931 2456899999999999999999986 223 688999
Q ss_pred hhhHHHHHHHHHHHhcChhhH-----------------------------HHhhcCHHHHHhhHHHhhccccC-------
Q 000873 888 ADLRDLLLQSISVLVQYKDYL-----------------------------AAFESNEAATLRLPKALISAFDN------- 931 (1245)
Q Consensus 888 ~~~~d~lvq~l~~~l~~~~~i-----------------------------~~fe~n~~~~~~Lv~aLl~~y~~------- 931 (1245)
....+.++.++++||++|+|| ++|++||.++++|++|||++|.+
T Consensus 318 ~~~~~~l~~f~i~fm~s~~~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~ 397 (629)
T PF10408_consen 318 SQDLDELVTFCITFMGSPEYIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGAS 397 (629)
T ss_dssp T-THHHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SS
T ss_pred hhhHHHHHHHHHHHhCChhhcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998 26777777777788888877743
Q ss_pred ---------CCcccchhHHhhhccccCCccCcCCCCCCCcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHH
Q 000873 932 ---------RSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISI 1002 (1245)
Q Consensus 932 ---------R~wi~~~~iLlrl~~g~gFa~rk~~~~~~~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l 1002 (1245)
||.|.. ||..+ |.++.||+++.+++++|+++|+||+|+||||+||+|||++..|
T Consensus 398 ~qfydKFn~R~~i~~--il~~l---------------w~~~~~r~~~~~~~~~~~~~F~rFvn~liND~~~llDE~l~~L 460 (629)
T PF10408_consen 398 TQFYDKFNIRYHISQ--ILKYL---------------WKNPEYREQFIKEAKENPPLFVRFVNMLINDTTFLLDESLSKL 460 (629)
T ss_dssp SSSTCHHHHHHHHHH--HHHHH---------------HH-HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcccchhhHHH--HHHHH---------------cCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 44444 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh------------hH---------HHhhhhhhHHHhHHHHHHHHHHHhhhcccccCCChhhHHHHHHHHHHH
Q 000873 1003 REMQEKYQV------------SE---------FQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVF 1061 (1245)
Q Consensus 1003 ~eIq~~~~~------------~e---------~qqr~c~s~f~Ls~~t~r~Le~~T~~ip~~F~~p~~~iv~RLa~MLny 1061 (1245)
++||+.|.. +| ..+|+|++|++|+++|++||++||+++|++|++|+ ||+|||+||||
T Consensus 461 ~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~~t~~~l~~lt~~~~~~Fl~~e--lv~RlA~MLn~ 538 (629)
T PF10408_consen 461 KEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLANETLKMLNYLTSEIPEPFLRPE--LVDRLAAMLNY 538 (629)
T ss_dssp HHHHHHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHH--HHHHHHHHHHH
Confidence 999996431 11 12577999999999999999999999999999885 99999999999
Q ss_pred HHhhhcCCcccccchhccccccCCccc--cCchhhhhhHHHHHHHhcccccccccCcccceeeeeeccCCCchhhhhHHH
Q 000873 1062 ILNHVTSAADAEFFDLSLRRHGQSLEK--VNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQY 1139 (1245)
Q Consensus 1062 nL~~l~~~~~~~~~~~~lk~~~~~~ek--~~~~~lL~~i~gIyLnL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~ 1139 (1245)
||.+|+| |+|+. +||+ |||+ |+|+.+|..|++||+||+..++| +.||| .|+|||..+.|++
T Consensus 539 ~L~~L~G-pk~~~--LkVk----~~~~y~F~P~~ll~~i~~iy~~l~~~~~F---------~~ava-~D~Rsy~~~lf~~ 601 (629)
T PF10408_consen 539 NLDQLVG-PKCSE--LKVK----NPEKYGFDPKELLSQIVDIYLNLSDSDKF---------VQAVA-NDGRSYSPELFEK 601 (629)
T ss_dssp HHHHHHS-HHHHT-----S----SGGGGT--HHHHHHHHHHHHHHCTT-HHH---------HHHHH-H-TTT--HHHHHH
T ss_pred HHHHHcC-Cchhc--ccCC----ChhhcCCcHHHHHHHHHHHHhhcCCchHH---------HHHHH-hCCCCCCHHHHHH
Confidence 9999985 55543 4555 5676 58899999999999999999999 68999 7999999999999
Q ss_pred HHhhccccCcCCCCCHHHHHHHHHHHHHHHH
Q 000873 1140 LLEYNWAGSFRGDTYLSKLGQLECFLSLVLC 1170 (1245)
Q Consensus 1140 l~~i~~~~~~~~~~~~~~i~~l~~~~~~l~~ 1170 (1245)
+.++... .+.++.+++++|++|++++++
T Consensus 602 a~~~l~~---~~l~~~~~i~~f~~l~~~ve~ 629 (629)
T PF10408_consen 602 AVRILRR---IGLKSEDEIEKFEELAKKVEE 629 (629)
T ss_dssp HHHHHTT---STSSTHHHHHHHHHHCCHHHH
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHHhC
Confidence 9998743 377899999999999988864
No 4
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-51 Score=504.04 Aligned_cols=456 Identities=15% Similarity=0.122 Sum_probs=364.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHhhhhhHhhhh
Q 000873 752 EELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISL 831 (1245)
Q Consensus 752 ~elld~~~~lyhl~~~~~~~~~~~~~~~~~~~~~~l~et~~~i~~~~~~~~~~~~k~~~~~~~e~l~~~aR~~aw~r~~l 831 (1245)
++-++-.+..-|+|+.+.+.++...-+++.++...++..+....++. ..++..+..+...+.+.-.++++.|+.+.+
T Consensus 400 t~cfFltl~~~~l~~~~~~~~~~~i~~~i~~l~~~i~~lk~~~d~~~---~a~~~~~~l~r~e~~lk~~~~~k~~~~~~~ 476 (943)
T KOG2042|consen 400 TECFFLTLAALHLGLLPTCSAFSEINRSLPELKPLIETLKVIADGYS---VANLESADLTRLEKGLKLLSSIKPCLEITL 476 (943)
T ss_pred hHHHHHHHHHHHhchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 37788899999999999999998777777777777766644333332 444444566777888889999999999999
Q ss_pred ccHhHHhhhH----HHHHHHHHHhh-------cc-CCCCCccccchHHHHHHHHHHHhhhccCC-cccChhhHHHHHHHH
Q 000873 832 FSRWKQRGMY----ATCVWVVQLLL-------VL-SKVDSVFIYIPEFYLEALVTFVVTHFNDP-RISSADLRDLLLQSI 898 (1245)
Q Consensus 832 f~~~~q~~~~----~~~~WLlrl~~-------~~-s~~~~~F~~lPEfylE~iv~Fl~~~~~~p-~I~~~~~~d~lvq~l 898 (1245)
+....+.+.+ .++.|++|++. .+ .+.|..|+|+||||+||+.+|+.+...-+ ..+.....+.++.++
T Consensus 477 ~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~p~~f~~lPE~~vedi~efllf~~~~~~~~l~~~~~~~~~~f~ 556 (943)
T KOG2042|consen 477 LFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNAPCRFSALPEFFVEDIEEFLLFARKLGKMALDLQRLADIVTFL 556 (943)
T ss_pred cCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCCccccccCchhhcCCHHHHHHHHHHhchhhhccccchhHHHHH
Confidence 8887777777 57999999988 22 35789999999999999999999733323 456667789999999
Q ss_pred HHHhcChhhHHHhhcCHHHHHhhHHHhhccccC-CCc--------cc---chhHHhhhccc-----------cCCccCcC
Q 000873 899 SVLVQYKDYLAAFESNEAATLRLPKALISAFDN-RSW--------IP---VTNILLRLCKG-----------HGFGSSKH 955 (1245)
Q Consensus 899 ~~~l~~~~~i~~fe~n~~~~~~Lv~aLl~~y~~-R~w--------i~---~~~iLlrl~~g-----------~gFa~rk~ 955 (1245)
+.++++++|+ +||+++++|+..|-.+--. ++- .. .-.-|+|++.- ++|++|.+
T Consensus 557 ~~~~~~~~~i----kNP~l~aKlvevl~~~~~~~s~~~v~~v~~~~~~~~L~~~llr~yv~ie~tg~s~qfydKfnvr~~ 632 (943)
T KOG2042|consen 557 TVFMTSSMYI----KNPYLRAKLVEVLSMPKPSLSFNAVSRVIEAHENGGLVPCLLRFYVDIESTGQSSQFYDKFNVRRN 632 (943)
T ss_pred HHhcccHhhh----cChHHHHHHHHHHhccCcccCchHHHHHHHhccccccchhhhhheeeeecCCCchhHHHHhHHHhh
Confidence 9999999999 9999998888755533210 000 00 00123333322 23444422
Q ss_pred CC----CCCCcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh------------hHH-----
Q 000873 956 GE----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQV------------SEF----- 1014 (1245)
Q Consensus 956 ~~----~~~~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~~~~------------~e~----- 1014 (1245)
.. ..|..|.|++.+.+.++.++++|+||+|+|+||++|+|||++..|.+||+.|+. +++
T Consensus 633 i~~i~~~mw~~pa~~~~~~~~~~~~~~~f~rfvn~l~Nd~t~lLDE~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~ 712 (943)
T KOG2042|consen 633 ISEILEYMWQDPAYRGEFMDEAKDAPPVFVRFVNMLLNDATFLLDESLSELMEIHQIQPSGKNIDQWTKLKREEREAKWG 712 (943)
T ss_pred HHHHHHHHhcCccccchhhhhccccchHHHHHHHHHhhhHHHHHhHHHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHh
Confidence 21 355779999999999999999999999999999999999999999999985432 111
Q ss_pred ----HhhhhhhHHHhHHHHHHHHHHHhhhcccccCCChhhHHHHHHHHHHHHHhhhcCCcccccchhccccccCCccccC
Q 000873 1015 ----QQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVN 1090 (1245)
Q Consensus 1015 ----qqr~c~s~f~Ls~~t~r~Le~~T~~ip~~F~~p~~~iv~RLa~MLnynL~~l~~~~~~~~~~~~lk~~~~~~ek~~ 1090 (1245)
.+|+|++++.++++|+.||+++|+++|++|++|+ +++|+|.||||||++++| |||+. +++|.+ ..+.|+
T Consensus 713 ~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~e--lv~rla~MLN~nL~~lvG-PK~~~--Lkvkdp--~~y~fe 785 (943)
T KOG2042|consen 713 RLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPE--LVERLAAMLNYNLSQLVG-PKCSD--LKVKDP--EKYGFE 785 (943)
T ss_pred ccccchhhhcccceeccchhhHHHHHHhhcchhhcchh--HHHHHHHHHhhhHHHhhC-Ccccc--cccCCc--cccCCC
Confidence 1477999999999999999999999999999996 999999999999999985 55553 355544 344469
Q ss_pred chhhhhhHHHHHHHhcccccccccCcccceeeeeeccCCCchhhhhHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHH
Q 000873 1091 RGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLC 1170 (1245)
Q Consensus 1091 ~~~lL~~i~gIyLnL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~~~~~~~~~~~~i~~l~~~~~~l~~ 1170 (1245)
|+++|++|++||+||...+.| +.|+| .|+|||..+.|..+..+. +.++.+...+|+.+..|++++++
T Consensus 786 Pk~ll~~i~~iYlnl~~~~~F---------~~avA-~D~RSys~~lF~~a~~~~---~k~~l~~~~~Ie~~s~la~~~~~ 852 (943)
T KOG2042|consen 786 PKQLLSQLSDIYLNLSSEPSF---------VEAVA-KDGRSYSEELFNHAISIL---RKRILKSSRQIEEFSELAERVEA 852 (943)
T ss_pred hHHHHHHHHHHHHhhccchhH---------HHHHh-ccccccCHHHHhhhHHHH---HHhhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999998888 68999 599999999999999887 23356677789999999998887
Q ss_pred HHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeC-CCCcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1171 HIEAQEMERTRCGRETDADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1171 ~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lP-CgH~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
...+..+++. ++++.|||+++||+++.|+|||.+| .|++.|++.|.+|++++.++||||+|++.
T Consensus 853 ~~~~~~~eee--~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~ 917 (943)
T KOG2042|consen 853 TASIDAEEEE--ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTE 917 (943)
T ss_pred HHHHHHHHHH--HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCch
Confidence 7766555444 3588999999999999999999999 88899999999999999999999999764
No 5
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=292.20 Aligned_cols=222 Identities=27% Similarity=0.489 Sum_probs=191.0
Q ss_pred HhhhHhhhCCCCCCCCCCCCccch--------hhHHHHHHhhhccccCCCccccccCCCcccccCCCCCceEEeCCCcCC
Q 000873 46 EQTLEYIFGLPNKSLGPLTCPVDN--------NLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSIC 117 (1245)
Q Consensus 46 e~~l~~iF~~~~~~~~~~~g~~~~--------~~v~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~gp~~V~LD~~~~~ 117 (1245)
.++|+.|+|..+..+++.+|++.+ |+||+.|++ ++.-.-+ ..+-.+| .|...++++.+..
T Consensus 30 aeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd-~~egk~g---k~~~~~g--------a~~~w~mn~~Drg 97 (725)
T KOG0349|consen 30 AEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRD-LEEGKAG---KGGMADG--------APREWKMNKQDRG 97 (725)
T ss_pred cccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHh-HhhcccC---CCcccCC--------CccccccCccccC
Confidence 578999999999999999999998 899999988 2211111 1111122 2445788999988
Q ss_pred CCeEEeCCCcEEEee--cceeeEEeCceee-cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCcCCCCceeEeCCCcce
Q 000873 118 GDVRIAKLPLLVESL--AMFSSARANVCVW-KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKK 194 (1245)
Q Consensus 118 ~~l~LS~d~L~v~~~--s~~~sVRAn~~V~-sGk~YFEV~I~s~G~irIG~at~~~~l~~~~gvG~d~~SwgY~G~~g~~ 194 (1245)
..+-|..|+|..++. +.|.++|||.++. .|||||||++.+.|.+||||+|..++++ +|.+.+++||.|.+.+.
T Consensus 98 ~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLd----lGt~~~gFGfGGTGkKS 173 (725)
T KOG0349|consen 98 LALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLD----LGTGLDGFGFGGTGKKS 173 (725)
T ss_pred ceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccc----cCccccccccCccCccc
Confidence 899999999999885 5999999999997 8999999999999999999999999986 89999999999999888
Q ss_pred ecCCCcCCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCC-
Q 000873 195 WNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPI- 273 (1245)
Q Consensus 195 ~~~~~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~~PFkYpp- 273 (1245)
.|.....||.+|+..|||||.+|+++++|+|+|||+.+|.||+.... ..+..+||||-+. +..+++|||..||||||
T Consensus 174 ~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~-~kn~~lfPAvvlk-Nael~fNFG~~~FKfpPg 251 (725)
T KOG0349|consen 174 TNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVK-YKNSNLFPAVVLK-NAELSFNFGSQPFKFPPG 251 (725)
T ss_pred cccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChh-hcccccchheeec-cceEEEecCCCccccCCC
Confidence 88788999999999999999999999999999999999999987653 4667899999875 46899999999999988
Q ss_pred CCcccC-CCCCCc
Q 000873 274 NCYLPL-QESPPV 285 (1245)
Q Consensus 274 ~Gf~pL-~~pp~~ 285 (1245)
+||.++ ++||+.
T Consensus 252 ngFva~s~Ap~e~ 264 (725)
T KOG0349|consen 252 NGFVAVSDAPNEH 264 (725)
T ss_pred CceEEeecCCccc
Confidence 699998 677764
No 6
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.4e-27 Score=274.31 Aligned_cols=194 Identities=27% Similarity=0.451 Sum_probs=171.8
Q ss_pred CCCceEEeCCCcCCCCeEEeCCCcEEEeecceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCCcC
Q 000873 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGD 180 (1245)
Q Consensus 104 ~gp~~V~LD~~~~~~~l~LS~d~L~v~~~s~~~sVRAn~~V~sGk~YFEV~I~s~---G~irIG~at~~~~l~~~~gvG~ 180 (1245)
..+..|.+...+.++.++|++|.|++++.++|++|||+++|..|.|||||+|... +++|+||++..+++. .+||+
T Consensus 288 ~~~~tv~l~~hdrA~ql~Is~drlt~tgeKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~Lq--ApvGY 365 (544)
T KOG2626|consen 288 SPMDTVNLSWHDRAEQLKISEDRLTATGEKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQ--APVGY 365 (544)
T ss_pred CchhhhhhhhhcccccccccccceeeecccceeeeeecccccccceeEEEEeecCCCccceeeeccccccccc--ccccc
Confidence 3345899999999999999999999999999999999999999999999999864 689999999999885 48999
Q ss_pred CCCceeEeCCCcceecCC-CcCCCCCCCCCCEEEEEEeCCC---------------------------------------
Q 000873 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------------------------------------- 220 (1245)
Q Consensus 181 d~~SwgY~G~~g~~~~~~-~~~YG~~f~~GDVIGC~LDld~--------------------------------------- 220 (1245)
|..||+|++.+|+++|.. ++.|...|+.|||||+.|++..
T Consensus 366 dkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l 445 (544)
T KOG2626|consen 366 DKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTL 445 (544)
T ss_pred ccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhcc
Confidence 999999999999999876 6789999999999999999862
Q ss_pred -----CeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCCC--CcccCCCCCCc-hHHHHHH
Q 000873 221 -----DEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPV-NVFATQL 292 (1245)
Q Consensus 221 -----g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~~PFkYpp~--Gf~pL~~pp~~-~~~a~~l 292 (1245)
..|.|+|||+.+|+||+||.. .+.|||+||+++++.+++|||+. |+|||. |+++. ++. ++..++.
T Consensus 446 ~~~pgS~I~f~KNG~~qG~Ay~ni~~---~G~YyPaIS~yks~tv~~nfGP~-F~~~p~~lg~~~~---~m~~~~~eqi~ 518 (544)
T KOG2626|consen 446 KIKPGSEIEFFKNGVSQGVAYENIYK---AGAYYPAISIYKSCTVKFNFGPQ-FRYPPCVLGNRAV---GMSDRYKEQIA 518 (544)
T ss_pred ccCCCceEEEeecccchhhhhhhhhc---cccccceeeecccceEEEecccc-ccCCccccCCCcc---cccchhhhhHH
Confidence 689999999999999999862 36899999999999999999986 999874 66654 333 5688899
Q ss_pred HHHHHHhhcCcccc
Q 000873 293 LQCLSRLLGMDKAE 306 (1245)
Q Consensus 293 ~~~~~~ll~~~~~~ 306 (1245)
+++++++|++.+.|
T Consensus 519 E~~l~DiLy~ve~e 532 (544)
T KOG2626|consen 519 EDTLADILYEVEQE 532 (544)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987443
No 7
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.85 E-value=9.3e-21 Score=185.57 Aligned_cols=118 Identities=38% Similarity=0.650 Sum_probs=104.7
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCcCCCCceeEeCCCcceecCCC-cCCCCCCCC-CCEEEEEEeCCCCeE
Q 000873 146 KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEA-EPYGQSWVA-GDIIGCCIDLDSDEI 223 (1245)
Q Consensus 146 sGk~YFEV~I~s~G~irIG~at~~~~l~~~~gvG~d~~SwgY~G~~g~~~~~~~-~~YG~~f~~-GDVIGC~LDld~g~I 223 (1245)
+|+|||||+|.+.+.++|||++..++.+....+|++.+||+|+++++..|++.. ..|+.++.. ||+|||+||+++|+|
T Consensus 1 sG~~YwEV~v~~~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~~g~l 80 (122)
T smart00449 1 SGRHYFEVEIFDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLEAGTI 80 (122)
T ss_pred CCcEEEEEEEcCCCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECCCCEE
Confidence 599999999999999999999998875444579999999999999988887664 578889987 999999999999999
Q ss_pred EEEECCeee-ecccccccccCCCCcEEEEEEeCCCCEEEEecCC
Q 000873 224 SFYRNGVSL-GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGA 266 (1245)
Q Consensus 224 ~FtkNG~~L-GvAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~ 266 (1245)
+||+||+.+ +.+|..+. ...++||+|++..+..+++|||+
T Consensus 81 ~F~~ng~~~~~~~f~~~~---~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 81 SFYKNGKYLHGLAFFDVK---FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEECCCEeeeEEEeccC---CCCcEeeEEEcCCCCEEEEEecC
Confidence 999999999 79998754 34699999999888899999996
No 8
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.85 E-value=8.8e-21 Score=185.22 Aligned_cols=120 Identities=42% Similarity=0.663 Sum_probs=102.5
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCC-CCCCCCCCcCCCCceeEeCCCcceecCC-CcCCCCCCCC-CCEEEEEEeCCCCe
Q 000873 146 KGKWMYEVTLETSGVQQLGWATLSC-PFTDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVA-GDIIGCCIDLDSDE 222 (1245)
Q Consensus 146 sGk~YFEV~I~s~G~irIG~at~~~-~l~~~~gvG~d~~SwgY~G~~g~~~~~~-~~~YG~~f~~-GDVIGC~LDld~g~ 222 (1245)
+|+|||||+|.+.+.+.|||++... .......+|++..||+|++.++..|++. ...++.++.. ||||||++|+++|+
T Consensus 1 sG~~YwEV~v~~~~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~~~g~ 80 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDLDNGE 80 (124)
T ss_dssp SSEEEEEEEETGGCTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEETTTTE
T ss_pred CcCEEEEEEEecCcCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEeecccE
Confidence 6999999999998889999999998 1122346899999999999997777665 4678899998 99999999999999
Q ss_pred EEEEECCeeee-cccccccccCCCCcEEEEEEeCCCCEEEEecCCCC
Q 000873 223 ISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARP 268 (1245)
Q Consensus 223 I~FtkNG~~LG-vAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~~P 268 (1245)
|+||+||+.++ .+|+++. ...++||+|++..+.++++|||++|
T Consensus 81 l~F~~ng~~~~~~~f~~~~---~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 81 LSFYKNGKFLGIYAFTDID---FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp EEEEETTEEEEEEEEESCT---TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred EEEEECCccceeEEEECCC---CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 8898654 2369999999988899999999986
No 9
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.68 E-value=1e-15 Score=153.78 Aligned_cols=160 Identities=24% Similarity=0.302 Sum_probs=135.3
Q ss_pred ceEEeCCCcCCCCeEEeCCCcEEEeecceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCcCCCCcee
Q 000873 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYA 186 (1245)
Q Consensus 107 ~~V~LD~~~~~~~l~LS~d~L~v~~~s~~~sVRAn~~V~sGk~YFEV~I~s~G~irIG~at~~~~l~~~~gvG~d~~Swg 186 (1245)
+.|.||.....+++.|-+.++.+.|. +++.|+.++...|-||||+|.+.|.|.||+++...+++.. +.|.|..||+
T Consensus 27 P~V~LD~~hMG~dVvilk~g~RicGt---GG~lAtaPlvQnKsYFevkiQ~tG~WgiGlat~q~~l~~~-p~g~d~~sw~ 102 (197)
T KOG4030|consen 27 PTVRLDVGHMGKDVVILKEGERICGT---GGALATAPLVQNKSYFEVKIQQTGTWGIGLATKQSPLDKV-PGGCDEKSWG 102 (197)
T ss_pred CcEEeehhccCCcEEEEecCcEEecc---CceeeeeeeecccceEEEEEeecceeeeeeeeccCccccC-CCCCcceeEE
Confidence 78999999999999999999888764 7889999999999999999999999999999999999864 5788999999
Q ss_pred EeCCCcceecCCCcC---CCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEe
Q 000873 187 FDGRRVKKWNKEAEP---YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLN 263 (1245)
Q Consensus 187 Y~G~~g~~~~~~~~~---YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~g~~V~vN 263 (1245)
.++++...+|+.... -..--..|||||+.+| .-++-||.||+.+...|+++. +++||.|-+.++..+.+.
T Consensus 103 ~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayD--HVELnfY~NGKn~e~p~~gvR-----G~vyPvvYVddsAILD~~ 175 (197)
T KOG4030|consen 103 IRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYD--HVELNFYVNGKNVEDPITGVR-----GPVYPVVYVDDSAILDLK 175 (197)
T ss_pred EccCCchhcccHHHhcCccccCCccCcEEEEEee--eEEEEEEEcCceecccccccc-----cceeeEEEeCCceEEEEE
Confidence 998876554443221 1111268999999998 678999999999999999886 599999999998888888
Q ss_pred cCCCCCcc-CCCCcccC
Q 000873 264 FGARPFKY-PINCYLPL 279 (1245)
Q Consensus 264 FG~~PFkY-pp~Gf~pL 279 (1245)
|- .|.. ||+||..+
T Consensus 176 f~--nF~h~PPpGFe~I 190 (197)
T KOG4030|consen 176 FK--NFTHAPPPGFEEI 190 (197)
T ss_pred ec--ccccCCCCChhhe
Confidence 74 4777 88999765
No 10
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-16 Score=190.44 Aligned_cols=158 Identities=32% Similarity=0.617 Sum_probs=131.7
Q ss_pred eCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCCcCCCCceeEeCCCcceecCCCcCCCCCCCCCCEEEEEEeCC
Q 000873 140 ANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLD 219 (1245)
Q Consensus 140 An~~V~sGk~YFEV~I~s~G~irIG~at~~~~l~~~~gvG~d~~SwgY~G~~g~~~~~~~~~YG~~f~~GDVIGC~LDld 219 (1245)
-+++|..|+||||++..+.|.|+|||+++.|..+.. +|.|...++|+|.++..||.+...||.+|.+||||||.+|++
T Consensus 1099 ksyavkagkwyfefe~vt~gdmrvgwarpgc~pd~e--lgadd~af~fdg~k~qrwhqg~~~~grswq~gdvvgcmi~l~ 1176 (5019)
T KOG2243|consen 1099 KSYAVKAGKWYFEFETVTAGDMRVGWARPGCQPDQE--LGADDQAFAFDGFKAQRWHQGNEHFGRSWQAGDVVGCMIDLD 1176 (5019)
T ss_pred hhheeeccceEEEEEEeeccceeecccCCCCCcchh--hCCccceeeeccchhhhhhccccccccccCCCCeEEEEEecc
Confidence 467899999999999999999999999999988754 899999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCeee------ecccccccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccC-----CCCcccCC---CCC
Q 000873 220 SDEISFYRNGVSL------GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYP-----INCYLPLQ---ESP 283 (1245)
Q Consensus 220 ~g~I~FtkNG~~L------GvAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~~--PFkYp-----p~Gf~pL~---~pp 283 (1245)
+.++.||.||+.+ ..||.+. ..+.++.|..+++-.+.-++|||.+ .|+|- .+||.|+. +.-
T Consensus 1177 d~sm~ftlngeili~~~gselaf~d~---di~~gfipic~lg~aqigrmn~g~d~st~k~~ticglqeg~epfavn~nrd 1253 (5019)
T KOG2243|consen 1177 DASMIFTLNGEILIDDKGSELAFADF---DIEDGFIPICCLGLAQIGRMNFGKDASTFKFFTICGLQEGFEPFAVNMNRD 1253 (5019)
T ss_pred cceEEEEEcCeEEEcCCCCeeeeccc---cccCCceeeeehhhHhhcccccCCcccceeeeeeecccccCccceecccch
Confidence 9999999999988 2577764 3567999999988667778999976 58883 48999982 222
Q ss_pred CchHHHHHHHHHHHHhhcC
Q 000873 284 PVNVFATQLLQCLSRLLGM 302 (1245)
Q Consensus 284 ~~~~~a~~l~~~~~~ll~~ 302 (1245)
...++++++-+.++--.++
T Consensus 1254 i~mw~skrlp~f~~vp~~h 1272 (5019)
T KOG2243|consen 1254 IAMWFSKRLPQFLNVPKDH 1272 (5019)
T ss_pred HHHHHHhhchhhhcCCCCC
Confidence 3344666666665544433
No 11
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.59 E-value=1.1e-16 Score=193.56 Aligned_cols=545 Identities=19% Similarity=0.119 Sum_probs=371.5
Q ss_pred CCceeEeCCCcceecCCCcCCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEE
Q 000873 182 DDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCV 261 (1245)
Q Consensus 182 ~~SwgY~G~~g~~~~~~~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~g~~V~ 261 (1245)
..+|.+++....+|+....+++..|.. |+|+|+++..--.+ ++.|+...+.+|+......++...+|++++..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~ 85 (558)
T KOG2242|consen 8 GFSYFEDGEDRRAWSPQPPAEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCF 85 (558)
T ss_pred ccccccccchhhhccCCCCcccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchh
Confidence 788999999999999999999999999 99999999988888 9999999999998776567888999999999999999
Q ss_pred EecCCCCCccCCCCcccCCCCCCchHHHHHHHHHHHHhhcCcccccch-hhhhhhhhcccccccccccchHHHHHHHHHh
Q 000873 262 LNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSS-VEKSRRLKRFVSLEKIFNPVSHGICEEFFSL 340 (1245)
Q Consensus 262 vNFG~~PFkYpp~Gf~pL~~pp~~~~~a~~l~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 340 (1245)
.|+++.||.++ +|.+.+..|.......-|..+...+.+-....+.. .++....-++..+.+.|.......|-.+.+.
T Consensus 86 ~~~~~e~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~ 163 (558)
T KOG2242|consen 86 EMRINEPEEVP--HFQPLEPDPHDVRIGWSLDSIRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEI 163 (558)
T ss_pred hcccccccccC--CCCccccccccccccccchhhhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccc
Confidence 99999999998 89999877777666666777666666544111211 1111111111122334444444457788888
Q ss_pred hhhccccceehhhhhHHHHHHHHhcCCCC-CCCchhHHHHHHHHHhhchhhHHHHHHHHHhhcccccccccccCCCCCCC
Q 000873 341 LEADARIIEYVGWGILLSFMMEVFGLQVP-HDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSY 419 (1245)
Q Consensus 341 l~~~~~~~~y~~~~~l~~fl~~~~~~~~p-~~~~~~~~~l~l~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 419 (1245)
++...+.-++...+..+.|+++....+.+ +..+.+.....++..|-+.+...+.+.+.... -+..|+- ||.+..+.
T Consensus 164 ~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~-i~~~~~~--~~~~~~~~ 240 (558)
T KOG2242|consen 164 LDEVELSYEKNGQDLGESFLLSKEDLGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTF-IQNYPLE--ERLRGPVG 240 (558)
T ss_pred cccCcchhhhccchhhhhhcchhhhccCcccCcccccCcceeccccccccccccccchhhhh-hhhcchh--hcccCCCC
Confidence 87777777888889999999998877665 44566777778899998888555555555444 3333443 68888899
Q ss_pred chhhHhHhhhccHHHHHHHhhhcchhhhhcccccccCCCcchhccccCccccCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 000873 420 PYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIE 499 (1245)
Q Consensus 420 ~~l~l~~~~~~~~~~~~~~~~~~~f~~~~~~fl~~k~p~~~~l~~l~p~vwwp~~~~~~~~e~~~~~~~~~l~~~~~~ve 499 (1245)
+.....|+...+.-++..|+.+-.++...+++.-. -+..+....+|.+||.|..+....+.+
T Consensus 241 p~~~~~c~~~~~~g~~~~g~~~~~le~~~q~~~~~--~~i~g~~~~~~~~~~~g~~~~~~~~~s---------------- 302 (558)
T KOG2242|consen 241 PETKKECEVFMMRGLPGAGKTSWALEPAAQNPEKG--GNILGGNTIMPKMRVVGLEEQTNDAFS---------------- 302 (558)
T ss_pred ccccccchhhhcccccccccchhhhhhhhhCcccc--CCccccccccCCcCcccchhhhhcccc----------------
Confidence 99999999999998999999998888888888553 688899999999999997652111111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhhcccccCCccccc
Q 000873 500 EKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWL 579 (1245)
Q Consensus 500 ~~q~~l~~ll~~~~~~~~~~~~~~~~fr~fl~~~~~~nrg~~~~~~pp~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 579 (1245)
+-.+++ ..+......+.+.|.++++..+.+++ ++.+.+...|..+++.|.....+..+.+.. +
T Consensus 303 ------~~~~~~-~~~~~~~~~~~~i~~~~~r~~~~d~~----~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d------~ 365 (558)
T KOG2242|consen 303 ------RGYLIQ-QAGQCLNKLPRDIFLRKKRNYILDQT----NLSSSAQRRKMGLFSQFSRKAPVVCPAFED------L 365 (558)
T ss_pred ------ccchhh-ccccccccchhhhhhhhhhhhhhhcc----ccchhhceecccccccccccCCCcCCchhh------h
Confidence 111111 12222223345677777777766664 334555566778888888877777776555 7
Q ss_pred cccccCCCcccccccCCccccccccccccccccccccccccccccccccCCCCcchhhhhhcccccccccchhhc-ccCC
Q 000873 580 KRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVC-HLSE 658 (1245)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~RlGG~~shl~k~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~ 658 (1245)
++-++.-+.+.+++.+++..+++..++.++.+--..++.|++..|..+.++...+..+..+|....++...+|-. +...
T Consensus 366 ~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 445 (558)
T KOG2242|consen 366 KSRTIVRTEVEGKDVGETAVLEMNANFTLPGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPNDRRKSNINE 445 (558)
T ss_pred ccccceEeeeecccCCcceEEEEeeeeccCchhhhhhhccccccchhhcccccccHhHHhhhccCcccccccccccCcCc
Confidence 777777778899898888888888666665554455566666666666666666666666777777777655411 0000
Q ss_pred CCCcccCCcchhhhhccccccccccCCCCCCccCCCcccccccccccCCCCCccccCCCCCCCCCCCCCCCCCccccchh
Q 000873 659 HKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTV 738 (1245)
Q Consensus 659 ~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1245)
. .+.....--+..++.+.+..++.++. ..+.++.+..+-.....|+..++.+.+++..|...+..-
T Consensus 446 ~-------------~~~~~~~g~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (558)
T KOG2242|consen 446 T-------------DTQQQRRGGTANGSQKRGGFNMSGGQ-LGAPGNRGGNNRRDDNEPSRWGSSDMSFQQCPPPFQAGP 511 (558)
T ss_pred c-------------cchhhhccccccCCccceeeecccCC-CCCCccccccccCCCCCCCccCCCCcccccCccccCCCC
Confidence 0 00000000112223333333333332 333333333333456678888899999999877644433
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000873 739 LRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSI 784 (1245)
Q Consensus 739 ~~~~~~~~~~~~~~elld~~~~lyhl~~~~~~~~~~~~~~~~~~~~ 784 (1245)
. ++.+..-.+.....|+.-.++|+-+.++++.....+.+..+.+
T Consensus 512 ~--~~~~~~~~~~~~~~~~~~~~n~~~~~~~f~~~~~~~~~~~~~~ 555 (558)
T KOG2242|consen 512 F--QPPPGLKVPPFSYSDALGPPNRIIYAPNFRRPSYERAHTTLSQ 555 (558)
T ss_pred C--CCCCcCCCCccccccccCcccchhcccccccCccccccccccc
Confidence 3 2223444456688888999999999999998887777766554
No 12
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=143.43 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=133.2
Q ss_pred EEeCCCcCCCCeEEeCCC-cEEEeec---ceeeEEeCceeecCEEEEEEEEEe--cC-eEEEEEecCCCCCCCC---CCC
Q 000873 109 VGLEESSICGDVRIAKLP-LLVESLA---MFSSARANVCVWKGKWMYEVTLET--SG-VQQLGWATLSCPFTDH---KGV 178 (1245)
Q Consensus 109 V~LD~~~~~~~l~LS~d~-L~v~~~s---~~~sVRAn~~V~sGk~YFEV~I~s--~G-~irIG~at~~~~l~~~---~gv 178 (1245)
-.|++.+++.++.+-.++ ++++.+. .-.++|+..+.+.|.++|||.+.. .| +..||++|..+++... ..+
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 567778887777765544 7876653 356889999999999999999987 35 6789999999988542 368
Q ss_pred cCCCCceeEeCCCcceecCCC--cCC-----CCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEE
Q 000873 179 GDADDSYAFDGRRVKKWNKEA--EPY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1245)
Q Consensus 179 G~d~~SwgY~G~~g~~~~~~~--~~Y-----G~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPa 251 (1245)
|.+..|||++-.+...||++. -.| .+.+.++|.|+|++|++.|+++|.+||+.+|+||.+++ +..+||+
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~----~~~LYP~ 182 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK----DKKLYPA 182 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC----CCcceee
Confidence 999999999988888998872 123 46799999999999999999999999999999999865 5799999
Q ss_pred EEeC-CCCEEEEecCCCCCccCCCCcccC
Q 000873 252 VSLS-QGERCVLNFGARPFKYPINCYLPL 279 (1245)
Q Consensus 252 VSl~-~g~~V~vNFG~~PFkYpp~Gf~pL 279 (1245)
||.. ...++++-+-++++ +++..|+
T Consensus 183 Vsav~g~~Evtm~Ylg~~~---~~e~~~~ 208 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLD---VDEPDPL 208 (242)
T ss_pred eeehhcceeEEEEEeCCcC---cCCcccc
Confidence 9985 56789988888876 4554444
No 13
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.44 E-value=5.8e-13 Score=150.79 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=128.8
Q ss_pred eEEeCCCcCCCCeEEeCCCcEEEeec-ceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCCcCCCC
Q 000873 108 IVGLEESSICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGDADD 183 (1245)
Q Consensus 108 ~V~LD~~~~~~~l~LS~d~L~v~~~s-~~~sVRAn~~V~sGk~YFEV~I~s~---G~irIG~at~~~~l~~~~gvG~d~~ 183 (1245)
-++|++.....++.+|++.+++.|++ .++.+.++.++.+|.+||||+|+.- +.+.||++......+. .+|.|.+
T Consensus 534 wfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrnv--mlgkdlh 611 (699)
T KOG4367|consen 534 WFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRNV--MLGKDLH 611 (699)
T ss_pred eeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhce--eeccccc
Confidence 35677777788999999999999876 8999999999999999999999852 4789999998776553 5999999
Q ss_pred ceeEeCCCccee--cCCC--cCCCCCCCCCCEEEEEEeCCCCeEEEEECCeeee-cccccccccCCCCcEEEEEEeCCCC
Q 000873 184 SYAFDGRRVKKW--NKEA--EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGE 258 (1245)
Q Consensus 184 SwgY~G~~g~~~--~~~~--~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG-vAF~~i~~~~~~~~lYPaVSl~~g~ 258 (1245)
+|+..-++.+.| |+.+ ...-.....|-|||+.+|.+.|++.|++|.+-.+ .||+|.. +-||||+|+..+.
T Consensus 612 gwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmr-----glyypafsvnans 686 (699)
T KOG4367|consen 612 GWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMR-----GLYYPAFSVNANS 686 (699)
T ss_pred ceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeeccc-----ceeeeeeEeccCc
Confidence 999876666666 5543 2333467899999999999999999999998765 7999875 6899999999889
Q ss_pred EEEEecCCC
Q 000873 259 RCVLNFGAR 267 (1245)
Q Consensus 259 ~V~vNFG~~ 267 (1245)
++++.-|-.
T Consensus 687 sitvhtgls 695 (699)
T KOG4367|consen 687 SITVHTGLS 695 (699)
T ss_pred eEEEecCCC
Confidence 999998864
No 14
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.25 E-value=2.1e-12 Score=156.43 Aligned_cols=151 Identities=32% Similarity=0.576 Sum_probs=118.0
Q ss_pred CCCcEEEee--cceeeEEeCce--eecC-----EEEEEEEEEec--------CeEEEEEecCCC--CCC------CCCCC
Q 000873 124 KLPLLVESL--AMFSSARANVC--VWKG-----KWMYEVTLETS--------GVQQLGWATLSC--PFT------DHKGV 178 (1245)
Q Consensus 124 ~d~L~v~~~--s~~~sVRAn~~--V~sG-----k~YFEV~I~s~--------G~irIG~at~~~--~l~------~~~gv 178 (1245)
+.+|.++.. ...+++|-|.- |..| |||||..|... .+.+|||+.... |.. ++.|+
T Consensus 645 ~r~lllqtrlin~vss~rpniflgvaegsaqykkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggngv 724 (5019)
T KOG2243|consen 645 GRDLLLQTRLINDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNGV 724 (5019)
T ss_pred cchhhHHHHhhhhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCCc
Confidence 334444443 36778888764 4444 89999998752 489999998763 332 24689
Q ss_pred cCCCCceeEeCCCcceecCCCc-C----CCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEE
Q 000873 179 GDADDSYAFDGRRVKKWNKEAE-P----YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVS 253 (1245)
Q Consensus 179 G~d~~SwgY~G~~g~~~~~~~~-~----YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVS 253 (1245)
|+|-+||||+|-. .|.+... . --.-.+..|||.|++|+....|+|-+||+.+...|+++. .++-+||.+|
T Consensus 725 gddl~sygfdglh--lwsg~i~r~vas~nqhllrsddvisccldl~~psisfringqpvqgmfenfn---~dglffpv~s 799 (5019)
T KOG2243|consen 725 GDDLFSYGFDGLH--LWSGCIARAVASPNQHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFENFN---IDGLFFPVMS 799 (5019)
T ss_pred cchhhhcCCCcch--hhcccchhhhcChhhhhhcccchhhhhhhcCCCceEEEECCccchhHHhcCC---CcceeeeeEe
Confidence 9999999998864 6876521 1 123467899999999999999999999999988899864 4688999999
Q ss_pred eCCCCEEEEecCCC--CCcc-CCCCcccC
Q 000873 254 LSQGERCVLNFGAR--PFKY-PINCYLPL 279 (1245)
Q Consensus 254 l~~g~~V~vNFG~~--PFkY-pp~Gf~pL 279 (1245)
++.|.+|++-.|++ .|+| ||+||.|.
T Consensus 800 fsagikvrfllggrhgefkflpp~gyapc 828 (5019)
T KOG2243|consen 800 FSAGIKVRFLLGGRHGEFKFLPPPGYAPC 828 (5019)
T ss_pred eccCeEEEEEecccccceeecCCCCCccH
Confidence 99999999999998 5999 89999997
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.97 E-value=3.1e-10 Score=96.11 Aligned_cols=49 Identities=31% Similarity=0.749 Sum_probs=43.7
Q ss_pred CCccCccccccccCcEEeCCCCc-ccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
++..|+||++.+.+++++||||. +|..|+.+++.+...||+||++|++|
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35689999999999999999999 99999999999999999999999886
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=4.4e-10 Score=119.27 Aligned_cols=63 Identities=24% Similarity=0.442 Sum_probs=51.2
Q ss_pred hcCCCCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcC----------------CCCCCCCcccccc--ccccCC
Q 000873 1181 RCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN----------------CLRCFFCNATVLE--VVKVDE 1242 (1245)
Q Consensus 1181 ~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~----------------~~~CP~CR~~i~~--v~~i~~ 1242 (1245)
++...+..+++.|+||++.++|||+++|||.||+.||.+|+.. ...||.||++++. ++++.|
T Consensus 9 ~~~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 9 DTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cceeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3445566778999999999999999999999999999998642 3479999999765 556655
Q ss_pred c
Q 000873 1243 K 1243 (1245)
Q Consensus 1243 ~ 1243 (1245)
.
T Consensus 89 r 89 (193)
T PLN03208 89 R 89 (193)
T ss_pred c
Confidence 4
No 17
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.89 E-value=1e-09 Score=100.33 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCCccCccccccccCcEEeCCCCcccHHHHHHhhcC-CCCCCCCcccccc
Q 000873 1187 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1236 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~-~~~CP~CR~~i~~ 1236 (1245)
+|+++.||||.++|+|||++||||+|+++||.+|+.. ..+||+|+++++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4789999999999999999999999999999999988 7899999999875
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.85 E-value=2e-09 Score=94.58 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=43.2
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccc
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1235 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~ 1235 (1245)
++.||||.+.|+|||.+||||+||+.||.+++...++||+|+.+++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4689999999999999999999999999999988889999999974
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.78 E-value=3.7e-09 Score=86.88 Aligned_cols=38 Identities=32% Similarity=0.738 Sum_probs=31.0
Q ss_pred CccccccccCcEEeCCCCcccHHHHHHhhcCC----CCCCCC
Q 000873 1193 CCICYASEADAQFVPCSHRSCHGCISRHLLNC----LRCFFC 1230 (1245)
Q Consensus 1193 CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~----~~CP~C 1230 (1245)
||||.++++|||+|+|||+||++||.+++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998763 259987
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.1e-09 Score=112.00 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=49.4
Q ss_pred CCCCccCccccccccCcEEeCCCCcccHHHHHHhhcC---CCCCCCCccc--cccccccCC
Q 000873 1187 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN---CLRCFFCNAT--VLEVVKVDE 1242 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~---~~~CP~CR~~--i~~v~~i~~ 1242 (1245)
+...|.|.||++.-+|||.+.|||-||+.||.+|+.. ++.||+|++. ++.|++|.|
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3567999999999999999999999999999999875 4579999998 567888876
No 21
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.69 E-value=3.2e-08 Score=118.68 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=121.7
Q ss_pred eEEeCCCcC-CCCeEEeCCCcEEEee------cceeeEEeCceee--cCEEEEEEEEEec---CeEEEEEecCCCCCCCC
Q 000873 108 IVGLEESSI-CGDVRIAKLPLLVESL------AMFSSARANVCVW--KGKWMYEVTLETS---GVQQLGWATLSCPFTDH 175 (1245)
Q Consensus 108 ~V~LD~~~~-~~~l~LS~d~L~v~~~------s~~~sVRAn~~V~--sGk~YFEV~I~s~---G~irIG~at~~~~l~~~ 175 (1245)
.-.||+.+. +...+.+.|.....-. ...+.+.++..+. -|.+|||+.|.+. +.+.||.....++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~- 109 (469)
T KOG1477|consen 31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIE- 109 (469)
T ss_pred cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEeccccccc-
Confidence 345666555 3444455554443211 2455666666664 5799999999864 5788898888887765
Q ss_pred CCCcCCCCceeEeCCCcceec-CC--CcCCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEE--
Q 000873 176 KGVGDADDSYAFDGRRVKKWN-KE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYP-- 250 (1245)
Q Consensus 176 ~gvG~d~~SwgY~G~~g~~~~-~~--~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYP-- 250 (1245)
..|+..+||+|+|+.|.+++ +. +..|+++++.||.|||+++..+.+|+|++||..+|.+++.... .++|
T Consensus 110 -~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~-----~~~~~~ 183 (469)
T KOG1477|consen 110 -SEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSP-----DLLEEN 183 (469)
T ss_pred -ccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCccccccccccccc-----cccccc
Confidence 47887889999999999999 43 4679999999999999999999999999999999999987652 4444
Q ss_pred ---EEEeCCCCEEEEecC-CCCCccCCCC
Q 000873 251 ---AVSLSQGERCVLNFG-ARPFKYPINC 275 (1245)
Q Consensus 251 ---aVSl~~g~~V~vNFG-~~PFkYpp~G 275 (1245)
++.+..++.|.+||| ..+|.|+..+
T Consensus 184 ~n~~~~~s~~~~I~~~~g~~~~~~fd~~~ 212 (469)
T KOG1477|consen 184 GNLAWLFSPNEEVEVNFGLEEEFRFDFSG 212 (469)
T ss_pred cceeeEeccCceeeeeecCCCceeecccc
Confidence 344568899999999 7789987654
No 22
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.65 E-value=1.3e-08 Score=81.94 Aligned_cols=38 Identities=34% Similarity=0.823 Sum_probs=34.3
Q ss_pred CccccccccCc-EEeCCCCcccHHHHHHhhcCCCCCCCC
Q 000873 1193 CCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFC 1230 (1245)
Q Consensus 1193 CpIC~~~~~dp-V~lPCgH~fC~~CI~~~l~~~~~CP~C 1230 (1245)
|+||++.+.|| +.++|||.||+.||.+++....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999998899998
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.59 E-value=2.9e-08 Score=109.47 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=45.3
Q ss_pred CCCccCccccccccCc--------EEeCCCCcccHHHHHHhhcCCCCCCCCccccccccc
Q 000873 1188 ADDGMCCICYASEADA--------QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dp--------V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~~ 1239 (1245)
.++..|+||++.+.++ +..+|||.||..||.+|+...++||.||+++..|++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 4567899999976653 567899999999999999999999999999988865
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.2e-08 Score=110.99 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=45.2
Q ss_pred CCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
....|.||++.+.||..+||||.||.+||..|......||.||++.+.-
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3489999999999999999999999999999999999999999987653
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.47 E-value=5.4e-08 Score=80.29 Aligned_cols=40 Identities=28% Similarity=0.569 Sum_probs=35.5
Q ss_pred cCcccccccc---CcEEeCCCCcccHHHHHHhhcCCCCCCCCc
Q 000873 1192 MCCICYASEA---DAQFVPCSHRSCHGCISRHLLNCLRCFFCN 1231 (1245)
Q Consensus 1192 ~CpIC~~~~~---dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR 1231 (1245)
.|+||++.+. .++.++|||.||..||.+|+.++++||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999998874 567899999999999999999999999998
No 26
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.3e-08 Score=85.10 Aligned_cols=52 Identities=29% Similarity=0.584 Sum_probs=46.5
Q ss_pred ccCccccccccCcEEeCCCCc-ccHHHHHHhhcC-CCCCCCCccccccccccCC
Q 000873 1191 GMCCICYASEADAQFVPCSHR-SCHGCISRHLLN-CLRCFFCNATVLEVVKVDE 1242 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~-~~~CP~CR~~i~~v~~i~~ 1242 (1245)
.+|.|||+.+.|.|+.-|||. .|..|-.+.+.. ...||+||+||.+|++-..
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 679999999999999999998 499999998874 6799999999999987543
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1.1e-07 Score=111.52 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=46.8
Q ss_pred CCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1185 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1185 ~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
....+++.|+||.+.+.+||++||||.||..||..++.....||.||.++..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4446678999999999999999999999999999999888889999998754
No 28
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.24 E-value=6.1e-07 Score=72.66 Aligned_cols=38 Identities=32% Similarity=0.927 Sum_probs=35.2
Q ss_pred CccccccccCcE-EeCCCCcccHHHHHHhhc--CCCCCCCC
Q 000873 1193 CCICYASEADAQ-FVPCSHRSCHGCISRHLL--NCLRCFFC 1230 (1245)
Q Consensus 1193 CpIC~~~~~dpV-~lPCgH~fC~~CI~~~l~--~~~~CP~C 1230 (1245)
|+||.+.+.+|+ +++|||.||..|+.+++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 35589998
No 29
>PHA02926 zinc finger-like protein; Provisional
Probab=98.23 E-value=5.5e-07 Score=97.03 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=42.6
Q ss_pred CCCccCccccccccC---------cEEeCCCCcccHHHHHHhhcCC------CCCCCCccccccccc
Q 000873 1188 ADDGMCCICYASEAD---------AQFVPCSHRSCHGCISRHLLNC------LRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~d---------pV~lPCgH~fC~~CI~~~l~~~------~~CP~CR~~i~~v~~ 1239 (1245)
+.|..|+||++...+ ++..+|+|.||..||.+|.... ..||+||+.+..|++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 567889999987533 4677999999999999998642 359999999888765
No 30
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.8e-07 Score=93.87 Aligned_cols=47 Identities=28% Similarity=0.566 Sum_probs=40.7
Q ss_pred CccCccccccccC--cEEeCCCCcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1190 DGMCCICYASEAD--AQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1190 e~~CpIC~~~~~d--pV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
-+-||||++-... ||.+.|||+||+.||+..+.....||.||..|+.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3789999987655 5678999999999999999999999999987653
No 31
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.17 E-value=1.4e-06 Score=70.13 Aligned_cols=43 Identities=26% Similarity=0.654 Sum_probs=37.8
Q ss_pred cCccccccccCcEEeC-CCCcccHHHHHHhhcC-CCCCCCCcccc
Q 000873 1192 MCCICYASEADAQFVP-CSHRSCHGCISRHLLN-CLRCFFCNATV 1234 (1245)
Q Consensus 1192 ~CpIC~~~~~dpV~lP-CgH~fC~~CI~~~l~~-~~~CP~CR~~i 1234 (1245)
.|+||++.+.+++.++ |||.||..|+..++.. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998887766 9999999999999887 67899999864
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.14 E-value=8.2e-07 Score=97.95 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=43.8
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
..|-||-+.++-|+.++|||.||.-||++||.+.+.||.||.+..++
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 56999999999999999999999999999999999999999986554
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.12 E-value=8.8e-07 Score=99.52 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=44.0
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
..|-||.+.++-|+++||||+||.-||+.||.+.+.||.|+.++++-
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 56999999999999999999999999999999999999999987653
No 34
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.05 E-value=3.4e-06 Score=65.47 Aligned_cols=38 Identities=34% Similarity=0.842 Sum_probs=34.9
Q ss_pred CccccccccCcEEeCCCCcccHHHHHHhhc-CCCCCCCC
Q 000873 1193 CCICYASEADAQFVPCSHRSCHGCISRHLL-NCLRCFFC 1230 (1245)
Q Consensus 1193 CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~-~~~~CP~C 1230 (1245)
|+||++...+++.+||||.||..|+..++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999987 45679987
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.00 E-value=4.2e-06 Score=69.32 Aligned_cols=41 Identities=22% Similarity=0.711 Sum_probs=35.4
Q ss_pred cCccccccc---cCcEEeCCCCcccHHHHHHhhcCCCCCCCCcc
Q 000873 1192 MCCICYASE---ADAQFVPCSHRSCHGCISRHLLNCLRCFFCNA 1232 (1245)
Q Consensus 1192 ~CpIC~~~~---~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~ 1232 (1245)
.|+||+..+ ..|++++|||+||..|+.+.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999888 35788999999999999998855678999985
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.1e-06 Score=96.85 Aligned_cols=55 Identities=24% Similarity=0.631 Sum_probs=48.1
Q ss_pred CCccCccccccccCcEEeCCCCcc-cHHHHHHhhcCCCCCCCCccccccccccCCc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRS-CHGCISRHLLNCLRCFFCNATVLEVVKVDEK 1243 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~f-C~~CI~~~l~~~~~CP~CR~~i~~v~~i~~~ 1243 (1245)
....|.||++..+|.++|||.|.+ |.+|.+........||+||++|+....|...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 357899999999999999999986 9999998776677899999999998876543
No 37
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.99 E-value=2.7e-06 Score=70.48 Aligned_cols=35 Identities=26% Similarity=0.738 Sum_probs=22.5
Q ss_pred CccccccccC----cEEeCCCCcccHHHHHHhhcCC----CCCC
Q 000873 1193 CCICYASEAD----AQFVPCSHRSCHGCISRHLLNC----LRCF 1228 (1245)
Q Consensus 1193 CpIC~~~~~d----pV~lPCgH~fC~~CI~~~l~~~----~~CP 1228 (1245)
||||.+ +.+ |+.|||||+||+.|+.+.+.++ -+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 9999999999999999988743 2576
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.4e-06 Score=93.52 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=41.4
Q ss_pred CCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcc
Q 000873 1187 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNA 1232 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~ 1232 (1245)
..++..||||++.+++|+++||||+||+.||..++...-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3578899999999999999999999999999999884458999993
No 39
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.8e-06 Score=93.47 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=42.0
Q ss_pred CCCCccCccccccccCc-------------EEeCCCCcccHHHHHHhhcCCCCCCCCcccc
Q 000873 1187 DADDGMCCICYASEADA-------------QFVPCSHRSCHGCISRHLLNCLRCFFCNATV 1234 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dp-------------V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i 1234 (1245)
..+|..|.||++.|-.| --|||||.+--.|++.|+.+.++||+||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 35778999999985433 6799999999999999999999999999993
No 40
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.9e-06 Score=92.53 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=40.4
Q ss_pred CCccCccccccccCcEEeCCCCcccHHHHHH-hhcCCC-CCCCCccccc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRSCHGCISR-HLLNCL-RCFFCNATVL 1235 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~-~l~~~~-~CP~CR~~i~ 1235 (1245)
.++.|+||++.+.+|+.+||||+||..||.. |-.... .||.||+...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 3678999999999999999999999999998 544444 5999999854
No 41
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.9e-06 Score=94.04 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=42.7
Q ss_pred CccCccccccccCcEEeCCCCc-ccHHHHHHhhcCCCCCCCCccccccccccC
Q 000873 1190 DGMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEVVKVD 1241 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~~~~CP~CR~~i~~v~~i~ 1241 (1245)
+.+|.|||+.++|.|+|+|||. .|..|-++. ..||+||+.|.+|++|-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 7899999999999999999997 599997643 38999999999998874
No 42
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.3e-06 Score=96.81 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=45.9
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCC-----CCCCCCcccccc--ccccCC
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNC-----LRCFFCNATVLE--VVKVDE 1242 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~-----~~CP~CR~~i~~--v~~i~~ 1242 (1245)
+..||||+....-|+.+.|||+||..||-+.|... ..||+||..|.. +.+|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 67799999999999999999999999999998764 379999999877 666543
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.8e-06 Score=91.03 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=43.7
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCCC-CCCCCcccccccc
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCL-RCFFCNATVLEVV 1238 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~-~CP~CR~~i~~v~ 1238 (1245)
...|+||+..+.-||.++|+|.||.-||+-...++. +|++||.||..-+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 456999999999999999999999999999877765 5999999998754
No 44
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.77 E-value=2e-05 Score=72.43 Aligned_cols=42 Identities=33% Similarity=0.672 Sum_probs=34.8
Q ss_pred CccCccccccccCc-------------EEeCCCCcccHHHHHHhhcCCCCCCCCc
Q 000873 1190 DGMCCICYASEADA-------------QFVPCSHRSCHGCISRHLLNCLRCFFCN 1231 (1245)
Q Consensus 1190 e~~CpIC~~~~~dp-------------V~lPCgH~fC~~CI~~~l~~~~~CP~CR 1231 (1245)
+..|+||.+.+.++ +..+|||.|...||.+|+....+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 33499999988333 4468999999999999999999999998
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.68 E-value=1.1e-05 Score=71.84 Aligned_cols=45 Identities=22% Similarity=0.613 Sum_probs=25.0
Q ss_pred ccCccccccccCcEE-eCCCCcccHHHHHHhhcCCCCCCCCccc--cccc
Q 000873 1191 GMCCICYASEADAQF-VPCSHRSCHGCISRHLLNCLRCFFCNAT--VLEV 1237 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~-lPCgH~fC~~CI~~~l~~~~~CP~CR~~--i~~v 1237 (1245)
..|++|.+.|++||. .-|.|+||..||...+.+ .||.|++| ++|+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence 469999999999996 589999999999876543 59999998 3554
No 46
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=97.62 E-value=1.2e-05 Score=97.01 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=73.5
Q ss_pred eeEeCCCcceecCC--CcCCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeC-CCCEEE
Q 000873 185 YAFDGRRVKKWNKE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLS-QGERCV 261 (1245)
Q Consensus 185 wgY~G~~g~~~~~~--~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~-~g~~V~ 261 (1245)
++|+++++..+... +..||+.+..||+|||++|..++.-+|++||..+|++|.... ..+||.|.+. .+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~-----~~~~~dvg~~~~~~~~~ 75 (469)
T KOG1477|consen 1 YGYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPP-----ALLYHDVGVVQAGEPLP 75 (469)
T ss_pred CCCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCc-----cccCCCcceeeCCCCCC
Confidence 46888888877654 578999999999999999999999999999999999998644 2477777775 678899
Q ss_pred EecCCCCCccCCCCc
Q 000873 262 LNFGARPFKYPINCY 276 (1245)
Q Consensus 262 vNFG~~PFkYpp~Gf 276 (1245)
.|||..||.+....|
T Consensus 76 ~N~~~~~Fe~~i~d~ 90 (469)
T KOG1477|consen 76 ANFGIYYFEFDILDY 90 (469)
T ss_pred cccccceeeeeHHHh
Confidence 999999999976544
No 47
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.5e-05 Score=96.46 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=42.6
Q ss_pred CCCccCccccccccC-----cEEeCCCCcccHHHHHHhhcCCCCCCCCccc
Q 000873 1188 ADDGMCCICYASEAD-----AQFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~d-----pV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
..+..|+||.+.|.. |-.+||||.||..|+.+|+...++||+||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 346789999999999 7899999999999999999999999999994
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=1.6e-05 Score=98.34 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=43.9
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcC-CCCCCCCcccc--ccccccC
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATV--LEVVKVD 1241 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~-~~~CP~CR~~i--~~v~~i~ 1241 (1245)
..||.|.+..+|.|++.|||+||..||...... ..+||.|.+++ .||.+|+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 579999999999999999999999999988765 56899999984 5555553
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.3e-05 Score=90.26 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=47.5
Q ss_pred CCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1185 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1185 ~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
..+..++.|.||+...-+||.+||||.||..||.+.+.....||.||.++.+
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4447899999999999999999999999999999988888899999999875
No 50
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0002 Score=83.04 Aligned_cols=48 Identities=25% Similarity=0.595 Sum_probs=40.5
Q ss_pred ccCccccccccCc---EEeCCCCcccHHHHHHhhcCCCC-CCCCcccccccc
Q 000873 1191 GMCCICYASEADA---QFVPCSHRSCHGCISRHLLNCLR-CFFCNATVLEVV 1238 (1245)
Q Consensus 1191 ~~CpIC~~~~~dp---V~lPCgH~fC~~CI~~~l~~~~~-CP~CR~~i~~v~ 1238 (1245)
+.|.||++-++.- .+|||+|.|-..||..|+...++ ||.|++.+-...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 5999999987763 67999999999999999988765 999999765443
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=5e-05 Score=86.73 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=44.1
Q ss_pred CCCccCccccccccCcEEeC-CCCcccHHHHHHhhcC-CCCCCCCccccccccc
Q 000873 1188 ADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLLN-CLRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dpV~lP-CgH~fC~~CI~~~l~~-~~~CP~CR~~i~~v~~ 1239 (1245)
.-++.||||+++.+...+++ |+|.||+.||-..+.. +..||-||+.+..-..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 45678999999999998876 9999999999998876 6689999998765543
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.19 E-value=0.00013 Score=83.84 Aligned_cols=48 Identities=25% Similarity=0.659 Sum_probs=42.5
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcCC--CCCCCCcccccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLNC--LRCFFCNATVLEVV 1238 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~--~~CP~CR~~i~~v~ 1238 (1245)
.+|.||-+.-+|.-+-||||..|..|+..|..++ ++|||||..|....
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4799999999999999999999999999998664 68999999876543
No 53
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00025 Score=79.46 Aligned_cols=45 Identities=29% Similarity=0.724 Sum_probs=38.1
Q ss_pred ccCccccccccC---cEEeCCCCcccHHHHHHhhc-CCCCCCCCccccc
Q 000873 1191 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLL-NCLRCFFCNATVL 1235 (1245)
Q Consensus 1191 ~~CpIC~~~~~d---pV~lPCgH~fC~~CI~~~l~-~~~~CP~CR~~i~ 1235 (1245)
..|.||++.+.. -+.+||.|.|-..|+..|+. .+.+||.||+++-
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 679999986542 26699999999999999998 4779999999874
No 54
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00019 Score=82.61 Aligned_cols=52 Identities=27% Similarity=0.603 Sum_probs=41.6
Q ss_pred CCCCCccCccccccccCcEEeCCCCcccH-HHHHHhhcCCCCCCCCccccccccccC
Q 000873 1186 TDADDGMCCICYASEADAQFVPCSHRSCH-GCISRHLLNCLRCFFCNATVLEVVKVD 1241 (1245)
Q Consensus 1186 ~~~de~~CpIC~~~~~dpV~lPCgH~fC~-~CI~~~l~~~~~CP~CR~~i~~v~~i~ 1241 (1245)
+.+-..+|.||.+.+.+.+++||||++|. .|- + ..+.||.||+.|..+.++.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs-~---~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCS-K---HLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHH-h---hCCCCchhHHHHHHHHHHh
Confidence 34556899999999999999999999874 332 2 3356999999999888764
No 55
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.92 E-value=0.00021 Score=81.33 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=45.9
Q ss_pred CCCccCccccccccCcEEe-CCCCcccHHHHHHhhcCCCCCCCCccccccccc
Q 000873 1188 ADDGMCCICYASEADAQFV-PCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dpV~l-PCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~~ 1239 (1245)
..-..|++|...+.|+.++ -|=|+||++||-+|+..+..||.|...|....+
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 4556899999999999876 599999999999999999999999998876643
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00068 Score=75.51 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=44.6
Q ss_pred CCCCCCccCccccccccCcEE-eCCCCcccHHHHHHhhcCC--CCCCCCcccccccc
Q 000873 1185 ETDADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLNC--LRCFFCNATVLEVV 1238 (1245)
Q Consensus 1185 ~~~~de~~CpIC~~~~~dpV~-lPCgH~fC~~CI~~~l~~~--~~CP~CR~~i~~v~ 1238 (1245)
+....+.+||+|...++.|-. .||||++|+.||....+.+ -+||-|.++.....
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 444567899999999999965 5799999999999987764 69999999876443
No 57
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.74 E-value=0.0012 Score=62.49 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.3
Q ss_pred EEeCCCCcccHHHHHHhhcC---CCCCCCCccccc
Q 000873 1204 QFVPCSHRSCHGCISRHLLN---CLRCFFCNATVL 1235 (1245)
Q Consensus 1204 V~lPCgH~fC~~CI~~~l~~---~~~CP~CR~~i~ 1235 (1245)
|.-.|+|.|-..||.+|+.+ ++.||+||++.+
T Consensus 48 v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 44579999999999999975 468999999864
No 58
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00084 Score=78.20 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=45.3
Q ss_pred CCCccCccccccccCcE-----E---eCCCCcccHHHHHHhh--cC-----CCCCCCCcccccccccc
Q 000873 1188 ADDGMCCICYASEADAQ-----F---VPCSHRSCHGCISRHL--LN-----CLRCFFCNATVLEVVKV 1240 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dpV-----~---lPCgH~fC~~CI~~~l--~~-----~~~CP~CR~~i~~v~~i 1240 (1245)
..+..|-||++...+.+ + .+|.|.||-.||..|. .. .+.||+||.+.+-|.+-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 56789999999999988 5 5699999999999997 33 46899999999888764
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.47 E-value=0.0023 Score=71.61 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeC-CCCcccHHHHHHhhcC-CCCCCCCc
Q 000873 1154 YLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLLN-CLRCFFCN 1231 (1245)
Q Consensus 1154 ~~~~i~~l~~~~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lP-CgH~fC~~CI~~~l~~-~~~CP~CR 1231 (1245)
..++++.|+.+-++-+..+..-++ .. .+.--.-...||+|..+.++|+-+| |+|.||+.||...|+. +..||.|-
T Consensus 241 ~qpdvqsWe~Yq~r~~a~~~~~Dq-v~--k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~ 317 (427)
T COG5222 241 AQPDVQSWEKYQQRTKAVAEIPDQ-VY--KMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCS 317 (427)
T ss_pred eccchHHHHHHHHHHHhhhhCchh-hh--ccCCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcc
Confidence 346778888775443332221111 11 0111111278999999999999996 8999999999988764 77999998
Q ss_pred c
Q 000873 1232 A 1232 (1245)
Q Consensus 1232 ~ 1232 (1245)
.
T Consensus 318 r 318 (427)
T COG5222 318 R 318 (427)
T ss_pred c
Confidence 7
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.37 E-value=0.0017 Score=77.46 Aligned_cols=53 Identities=26% Similarity=0.606 Sum_probs=46.8
Q ss_pred CCCCccCccccccccCcEE-eCCCCcccHHHHHHhhcCCCCCCCCccccccccc
Q 000873 1187 DADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dpV~-lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~~ 1239 (1245)
..++..||||...+.||+. ..|||.||..|+..++.+.+.||.|+..++....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 3567899999999999999 5999999999999999999999999998765543
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.08 E-value=0.0038 Score=71.13 Aligned_cols=53 Identities=34% Similarity=0.653 Sum_probs=44.6
Q ss_pred CCCCCccCccccccccCcEEeCCCCcccHHHHHHh--hcCCCCCCCCcccccccc
Q 000873 1186 TDADDGMCCICYASEADAQFVPCSHRSCHGCISRH--LLNCLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1186 ~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~--l~~~~~CP~CR~~i~~v~ 1238 (1245)
.+.++.+|.||-.-.+-...+||+|..|..|.-|. |...+.||+||+.-+.|+
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34567899999999988889999999999998764 666789999999866664
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.07 E-value=0.0039 Score=54.97 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCccCccccccccCcEE-eCCCCcccHHHHHHhhcC--CCCCCC
Q 000873 1188 ADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLN--CLRCFF 1229 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dpV~-lPCgH~fC~~CI~~~l~~--~~~CP~ 1229 (1245)
.-.+.|||....++|||. ..|||+|.++.|.+++.+ ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 456889999999999998 589999999999999944 347998
No 63
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.99 E-value=0.0042 Score=71.33 Aligned_cols=30 Identities=20% Similarity=0.619 Sum_probs=26.1
Q ss_pred CCCCcccHHHHHHhhcC-CCCCCCCcccccc
Q 000873 1207 PCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1236 (1245)
Q Consensus 1207 PCgH~fC~~CI~~~l~~-~~~CP~CR~~i~~ 1236 (1245)
+|||+||.+|+.+++.. ...||.|+.++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 89999999999998865 4589999998765
No 64
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.61 E-value=0.0045 Score=53.90 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=37.9
Q ss_pred CCccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
.+..|-.|...-+..+.+||||..|+.|-. +.+-+.||||.++++.-
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~--~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFP--GERYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccC--hhhccCCCCCCCcccCC
Confidence 456788899888889999999999999954 23345799999998753
No 65
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0068 Score=68.48 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=43.7
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
-|-|-||-..+.+||.+.|||.||..|..+++.....|++|.+.+..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 366999999999999999999999999999998889999999886554
No 66
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=95.18 E-value=0.0043 Score=76.79 Aligned_cols=141 Identities=28% Similarity=0.437 Sum_probs=99.8
Q ss_pred ceeeEEeCceeecCEEEEEEEEEec-------------CeEEEEEecCCCCCCCCCCCcCCCCceeEeCCCcceecCCCc
Q 000873 134 MFSSARANVCVWKGKWMYEVTLETS-------------GVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAE 200 (1245)
Q Consensus 134 ~~~sVRAn~~V~sGk~YFEV~I~s~-------------G~irIG~at~~~~l~~~~gvG~d~~SwgY~G~~g~~~~~~~~ 200 (1245)
.|...|+..++..+..-+|-++... -..+|||.-..+.. +++++..+++|.+.+.+-|+...+
T Consensus 68 ~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 143 (558)
T KOG2242|consen 68 PWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPDPHDVRIGWSLDSIRT----LLGDEPFSYGYSETGKKSCNSEVE 143 (558)
T ss_pred cCcccceeeeecCCcchhhcccccccccCCCCccccccccccccccchhhhh----ccccccccccccccccchhhHHHH
Confidence 4555565555554443333333221 24577877666433 688899999999999999988888
Q ss_pred CCCCCCCCCCEEEEEEeCC---CCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccCCCC
Q 000873 201 PYGQSWVAGDIIGCCIDLD---SDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYPINC 275 (1245)
Q Consensus 201 ~YG~~f~~GDVIGC~LDld---~g~I~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~g~~V~vNFG~~--PFkYpp~G 275 (1245)
.|++.+...|+|||.++.. .-.+.|.+||..++.+|..-.....+..+||+|.. +...|..|||.+ +|.+.+.+
T Consensus 144 ~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~-~~~~ve~~f~~~~ag~~~v~~~ 222 (558)
T KOG2242|consen 144 KYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFLLSKEDLGGQALYPHVLR-KNCAVEGNFGQKAAGYEPVKEE 222 (558)
T ss_pred HHHhhcccccccchhhcccccccCcchhhhccchhhhhhcchhhhccCcccCccccc-Ccceeccccccccccccccchh
Confidence 9999999999999999964 57899999999999998654322233469999964 456889999987 34444444
Q ss_pred cccC
Q 000873 276 YLPL 279 (1245)
Q Consensus 276 f~pL 279 (1245)
|.-+
T Consensus 223 ~~~i 226 (558)
T KOG2242|consen 223 YTFI 226 (558)
T ss_pred hhhh
Confidence 4444
No 67
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.07 E-value=0.01 Score=63.42 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=40.4
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccc
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
-|+|-||-.-++.||.+.|||.||..|..+-......|.+|-+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 48999999999999999999999999999888777899999865
No 68
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.0095 Score=66.36 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=38.8
Q ss_pred CCccCccccccccCcE----------EeCCCCcccHHHHHHhhcC--CCCCCCCcccccc
Q 000873 1189 DDGMCCICYASEADAQ----------FVPCSHRSCHGCISRHLLN--CLRCFFCNATVLE 1236 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV----------~lPCgH~fC~~CI~~~l~~--~~~CP~CR~~i~~ 1236 (1245)
++..|.||.....+.+ .|.|+|+|-.-||+-|-.- +++||+|+..++-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 5678999987665554 7999999999999999543 6799999988654
No 69
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.72 E-value=0.0078 Score=74.49 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=44.4
Q ss_pred CccCccccccccCcEE---eCCCCcccHHHHHHhhcCCCCCCCCccccccccccC
Q 000873 1190 DGMCCICYASEADAQF---VPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVD 1241 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~---lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~~i~ 1241 (1245)
...||+|.....|-.. .+|+|.||..||..|....++||.||..+.+|+..+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 4579999888777644 589999999999999999999999999988887554
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.63 E-value=0.033 Score=63.16 Aligned_cols=57 Identities=9% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCCCccCccccccccC---cEE-eCCCCcccHHHHHHhhcCCCCCCCCcccc--ccccccCCcC
Q 000873 1187 DADDGMCCICYASEAD---AQF-VPCSHRSCHGCISRHLLNCLRCFFCNATV--LEVVKVDEKI 1244 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~d---pV~-lPCgH~fC~~CI~~~l~~~~~CP~CR~~i--~~v~~i~~~~ 1244 (1245)
....+.|||+...|.. -|. .||||+|+..++...- .+..||.|-.++ .+|++|.+..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 3567999999988854 344 4999999999999874 466899999995 4566776654
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.26 E-value=0.017 Score=69.11 Aligned_cols=48 Identities=21% Similarity=0.498 Sum_probs=40.7
Q ss_pred CCCccCccccccccCcEEeCCCCcccHHHHHHhhcC-----CCCCCCCccccc
Q 000873 1188 ADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN-----CLRCFFCNATVL 1235 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~-----~~~CP~CR~~i~ 1235 (1245)
..+..|-+|.+.-.|++...|-|+||+-||+....+ +-+||.|-.+++
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456799999999999999999999999999776432 348999988754
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.05 E-value=0.035 Score=47.40 Aligned_cols=43 Identities=30% Similarity=0.602 Sum_probs=22.6
Q ss_pred Cccccccc--cCcEEeC--CCCcccHHHHHHhhcC-CCCCCCCccccc
Q 000873 1193 CCICYASE--ADAQFVP--CSHRSCHGCISRHLLN-CLRCFFCNATVL 1235 (1245)
Q Consensus 1193 CpIC~~~~--~dpV~lP--CgH~fC~~CI~~~l~~-~~~CP~CR~~i~ 1235 (1245)
||+|.+.+ +|--+.| ||+..|+.|..+.+.+ ++.||-||++.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 78898776 4445555 8889999999999874 789999999863
No 73
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.029 Score=66.91 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=36.7
Q ss_pred CCccCccccccc------c-----------CcEEeCCCCcccHHHHHHhhcC-CCCCCCCcccccc
Q 000873 1189 DDGMCCICYASE------A-----------DAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1236 (1245)
Q Consensus 1189 de~~CpIC~~~~------~-----------dpV~lPCgH~fC~~CI~~~l~~-~~~CP~CR~~i~~ 1236 (1245)
+-..|+||++-. . +=..+||-|+|-++|+.+|... +-.||.||.|+-.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345599998632 1 1245699999999999999985 4599999999743
No 74
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.046 Score=60.42 Aligned_cols=50 Identities=8% Similarity=0.196 Sum_probs=43.6
Q ss_pred CCCccCccccccccCc----EEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1188 ADDGMCCICYASEADA----QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dp----V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
...+.||+|-+..+|. |.-||||++|..|..+....+..||+|-.|+.+-
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 3568999999988875 5569999999999999998899999999997753
No 75
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.41 E-value=0.032 Score=70.78 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=39.3
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcC--CCCCCCCcccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLE 1236 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~--~~~CP~CR~~i~~ 1236 (1245)
..|+||.+ ..++++.+|||.+|.+|+...+.. ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 899999999999999999998765 3469999987653
No 76
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.36 E-value=0.034 Score=65.92 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=36.4
Q ss_pred CccCccccccccCcE----EeCCCCcccHHHHHHhhcCCCCCCCCccccc
Q 000873 1190 DGMCCICYASEADAQ----FVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1235 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV----~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~ 1235 (1245)
--+||+|.+.|-+-| +++|.|.|-.+|+.+|+.+ +||+||-..+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC--cChhhhhhcC
Confidence 357999999997764 6899999999999998754 5999997655
No 77
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.92 E-value=0.035 Score=70.10 Aligned_cols=46 Identities=20% Similarity=0.559 Sum_probs=35.2
Q ss_pred ccCcccccccc--Cc-----EEeCCCCcccHHHHHHhhcC--CCCCCCCcccccc
Q 000873 1191 GMCCICYASEA--DA-----QFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLE 1236 (1245)
Q Consensus 1191 ~~CpIC~~~~~--dp-----V~lPCgH~fC~~CI~~~l~~--~~~CP~CR~~i~~ 1236 (1245)
..|+|||.... |- ..-.|+|.|--+|+-+|..+ +.+||.||..|+-
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 46999998754 32 12238899999999999876 4589999987764
No 78
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.55 E-value=0.047 Score=50.06 Aligned_cols=46 Identities=24% Similarity=0.605 Sum_probs=22.6
Q ss_pred CccCcccccccc-C---cEE--e--CCCCcccHHHHHHhhcC---C--------CCCCCCccccc
Q 000873 1190 DGMCCICYASEA-D---AQF--V--PCSHRSCHGCISRHLLN---C--------LRCFFCNATVL 1235 (1245)
Q Consensus 1190 e~~CpIC~~~~~-d---pV~--l--PCgH~fC~~CI~~~l~~---~--------~~CP~CR~~i~ 1235 (1245)
+..|+|||+... + |+. - .|++.|-..|+.+|++. . +.||+|+++|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 356999998754 2 221 1 57888888999999763 1 25999999986
No 79
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.03 E-value=0.075 Score=54.43 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CccCccccccccC---cEEeCCCC------cccHHHHHHhhcCCCCCCCCcccc
Q 000873 1190 DGMCCICYASEAD---AQFVPCSH------RSCHGCISRHLLNCLRCFFCNATV 1234 (1245)
Q Consensus 1190 e~~CpIC~~~~~d---pV~lPCgH------~fC~~CI~~~l~~~~~CP~CR~~i 1234 (1245)
...|.||++...+ .|.++||. .||.+|+.+|-....++||.|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccceE
Confidence 4569999998877 46689985 589999999987788999999853
No 80
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.50 E-value=0.17 Score=47.38 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=35.1
Q ss_pred ccCccccccccC----c-EEeCCCCcccHHHHHHhhcCCCCCCCCccccc
Q 000873 1191 GMCCICYASEAD----A-QFVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1235 (1245)
Q Consensus 1191 ~~CpIC~~~~~d----p-V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~ 1235 (1245)
..||-|..-|.. | |.=-|.|.|-..||.+|+.....||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 457777764421 2 33469999999999999999999999999854
No 81
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.22 E-value=0.17 Score=43.34 Aligned_cols=40 Identities=28% Similarity=0.713 Sum_probs=32.4
Q ss_pred cCccccc--cccCcEEeCCC-----CcccHHHHHHhhcCC--CCCCCCc
Q 000873 1192 MCCICYA--SEADAQFVPCS-----HRSCHGCISRHLLNC--LRCFFCN 1231 (1245)
Q Consensus 1192 ~CpIC~~--~~~dpV~lPCg-----H~fC~~CI~~~l~~~--~~CP~CR 1231 (1245)
.|.||++ ...++.+.||. |.+-.+|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889986 66778999996 667889999999654 4899995
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=0.15 Score=58.73 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=38.7
Q ss_pred CCCccCccccccccCc-EEeCCCCcccHHHHHHhhcCCCCCCCCccc
Q 000873 1188 ADDGMCCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dp-V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
++...||+|.-.-.+| |..-+|-+||+.||-.+..+-++||+..-|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 5678999999776666 445679999999999999999999997766
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.3 Score=57.84 Aligned_cols=33 Identities=33% Similarity=0.909 Sum_probs=27.2
Q ss_pred CCccCccccccccC---cEEeCCCCcccHHHHHHhh
Q 000873 1189 DDGMCCICYASEAD---AQFVPCSHRSCHGCISRHL 1221 (1245)
Q Consensus 1189 de~~CpIC~~~~~d---pV~lPCgH~fC~~CI~~~l 1221 (1245)
.-+.|.||++...- -+++||+|+||++|.+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~ 218 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYF 218 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHH
Confidence 34789999987544 4789999999999998764
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.12 E-value=0.16 Score=58.37 Aligned_cols=48 Identities=25% Similarity=0.594 Sum_probs=35.7
Q ss_pred CCccCccccccc--cCcEEe--CCCCcccHHHHHHhhcC-CCCCCCCcccccc
Q 000873 1189 DDGMCCICYASE--ADAQFV--PCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1236 (1245)
Q Consensus 1189 de~~CpIC~~~~--~dpV~l--PCgH~fC~~CI~~~l~~-~~~CP~CR~~i~~ 1236 (1245)
+|+.||+|++.| .|--|. |||-..|+-|....-.+ +++||-||...++
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 445599999865 344444 68888888887766555 6799999998765
No 85
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.14 Score=56.35 Aligned_cols=44 Identities=30% Similarity=0.588 Sum_probs=36.6
Q ss_pred CccccccccCcEEeCCCCc-ccHHHHHHhhcCCCCCCCCcccccccccc
Q 000873 1193 CCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEVVKV 1240 (1245)
Q Consensus 1193 CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~~~~CP~CR~~i~~v~~i 1240 (1245)
|-.|.......+++||.|. .|..|-. +.+.||+|+.+...-+.|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~----~~~~CPiC~~~~~s~~~v 205 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDE----SLRICPICRSPKTSSVEV 205 (207)
T ss_pred ceecCcCCceEEeecccceEecccccc----cCccCCCCcChhhceeec
Confidence 9999999999999999997 4889953 256799999998766554
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.1 Score=59.48 Aligned_cols=34 Identities=24% Similarity=0.658 Sum_probs=28.3
Q ss_pred EEeCCCCcccHHHHHHhhcCCCCCCCCccccccccc
Q 000873 1204 QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1204 V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~~ 1239 (1245)
-.+||+|+||..|...+ .++.||.|-.+|.+|..
T Consensus 105 RmIPCkHvFCl~CAr~~--~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSD--SDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccccchhhhhhhhhcC--ccccCcCcccHHHHHHH
Confidence 45899999999998744 47899999998887754
No 87
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.41 E-value=0.24 Score=58.49 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=35.1
Q ss_pred ccCccccccccC---cEEeCCCCcccHHHHHHhhcCC---CCCCCCccc
Q 000873 1191 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLLNC---LRCFFCNAT 1233 (1245)
Q Consensus 1191 ~~CpIC~~~~~d---pV~lPCgH~fC~~CI~~~l~~~---~~CP~CR~~ 1233 (1245)
|.|||=-+.-.| |+.|+|||+.|+.-+.+-..+. -+||+|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 689998765444 7999999999999999987663 379999654
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.73 E-value=0.5 Score=54.82 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=37.2
Q ss_pred CCccCccccccccCcEEe-CCCCcccHHHHHHhhcCCCCCCCCcccccccc
Q 000873 1189 DDGMCCICYASEADAQFV-PCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~l-PCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~ 1238 (1245)
+=..||||+..+.-|++- +=||..|-+|-.+ -...||+||-++.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~~R 94 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGNIR 94 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccccHH
Confidence 346799999999989542 4489999999753 3468999999998774
No 89
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=0.37 Score=59.46 Aligned_cols=36 Identities=28% Similarity=0.607 Sum_probs=28.8
Q ss_pred ccCccccccc----cCcEEeCCCCcccHHHHHHhhcCCCCCC
Q 000873 1191 GMCCICYASE----ADAQFVPCSHRSCHGCISRHLLNCLRCF 1228 (1245)
Q Consensus 1191 ~~CpIC~~~~----~dpV~lPCgH~fC~~CI~~~l~~~~~CP 1228 (1245)
.+|+||...+ ..||++-|||+.|+.|.. ++.+.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~--~lyn~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQ--LLYNASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHH--hHhhccCC
Confidence 4699996543 468999999999999987 45567788
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=0.65 Score=53.32 Aligned_cols=34 Identities=32% Similarity=0.680 Sum_probs=28.5
Q ss_pred cCcEEeCCCCcccHHHHHHhhcCCC-CCCCCcccc
Q 000873 1201 ADAQFVPCSHRSCHGCISRHLLNCL-RCFFCNATV 1234 (1245)
Q Consensus 1201 ~dpV~lPCgH~fC~~CI~~~l~~~~-~CP~CR~~i 1234 (1245)
.-|-.|.|||.+|..|+..++.+.. .|||||.+.
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3466777999999999999887754 799999995
No 91
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.04 E-value=2.3 Score=43.81 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEeC----CCCcccHHHHHHhhcC---CCCCCCC
Q 000873 1158 LGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVP----CSHRSCHGCISRHLLN---CLRCFFC 1230 (1245)
Q Consensus 1158 i~~l~~~~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lP----CgH~fC~~CI~~~l~~---~~~CP~C 1230 (1245)
+++-...++.++...+...--.. =.++.-..|.||.+.-.|.-+|. ||=..|..|-...|.. -+.||.|
T Consensus 52 l~~~~~~l~~I~~~n~r~qvmnv----F~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvC 127 (140)
T PF05290_consen 52 LSHSLKYLEKIKAINRRLQVMNV----FLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVC 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhee----ecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcc
Confidence 33444455555544444332111 12235578999999999999984 9999999999998876 4689999
Q ss_pred ccccccc
Q 000873 1231 NATVLEV 1237 (1245)
Q Consensus 1231 R~~i~~v 1237 (1245)
++.+...
T Consensus 128 kTSFKss 134 (140)
T PF05290_consen 128 KTSFKSS 134 (140)
T ss_pred ccccccc
Confidence 9987654
No 92
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.47 E-value=1.5 Score=42.37 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=27.7
Q ss_pred CCCCCccCccccccccCcEE--eCCCCcccHHHHHH
Q 000873 1186 TDADDGMCCICYASEADAQF--VPCSHRSCHGCISR 1219 (1245)
Q Consensus 1186 ~~~de~~CpIC~~~~~dpV~--lPCgH~fC~~CI~~ 1219 (1245)
.++++..|++|.....+.++ .||||++...|++|
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 34667889999988887755 69999999999864
No 93
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=81.46 E-value=1.4 Score=37.60 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.5
Q ss_pred EEeCCCcCCCCeEEeCCCcEEEe
Q 000873 109 VGLEESSICGDVRIAKLPLLVES 131 (1245)
Q Consensus 109 V~LD~~~~~~~l~LS~d~L~v~~ 131 (1245)
|+||+.++++.+.||+|+.+|..
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~ 23 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRY 23 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE
T ss_pred CEECcccCCCCeEECCCCeEEEE
Confidence 57999999999999999999964
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.99 E-value=3.9 Score=48.68 Aligned_cols=69 Identities=17% Similarity=0.431 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCccCccccccccCcEEe-----------------CCCCcc-----cHHHH
Q 000873 1161 LECFLSLVLCHIEAQEMERTRCGRE-TDADDGMCCICYASEADAQFV-----------------PCSHRS-----CHGCI 1217 (1245)
Q Consensus 1161 l~~~~~~l~~~~~~~e~e~~~~~~~-~~~de~~CpIC~~~~~dpV~l-----------------PCgH~f-----C~~CI 1217 (1245)
.+.|++.++++..+... .... ..++...|--|+....|--+. +|+.-+ |-+|+
T Consensus 245 ~drF~e~F~~~V~~Np~----y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm 320 (358)
T PF10272_consen 245 SDRFVEAFKEQVEQNPR----YSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECM 320 (358)
T ss_pred HHHHHHHHHHHHHhCCc----cccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHH
Confidence 35566666655544221 1112 224556788888766665443 455544 66999
Q ss_pred HHhhcC-------------CCCCCCCccc
Q 000873 1218 SRHLLN-------------CLRCFFCNAT 1233 (1245)
Q Consensus 1218 ~~~l~~-------------~~~CP~CR~~ 1233 (1245)
.+|..+ +-.||.||++
T Consensus 321 ~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 321 GKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred HHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 998543 2269999998
No 95
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=1.4 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCCCcccHHHHHHhhcC---CCCCCCCccccc
Q 000873 1207 PCSHRSCHGCISRHLLN---CLRCFFCNATVL 1235 (1245)
Q Consensus 1207 PCgH~fC~~CI~~~l~~---~~~CP~CR~~i~ 1235 (1245)
-|.|.|-..||.+|+.. ...||+||+..+
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 69999999999999865 347999999754
No 96
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.86 E-value=2.2 Score=49.72 Aligned_cols=46 Identities=30% Similarity=0.563 Sum_probs=37.2
Q ss_pred ccCccccccc--cCcEEe--CCCCcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1191 GMCCICYASE--ADAQFV--PCSHRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1191 ~~CpIC~~~~--~dpV~l--PCgH~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
-.||||++.+ .|.-++ |||+..|.-|......++..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 4699999865 444455 578888999999999999999999987654
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=71.69 E-value=1.2 Score=49.57 Aligned_cols=45 Identities=27% Similarity=0.686 Sum_probs=33.5
Q ss_pred CCccCccccc-cccCc--EE--eC-CCCcccHHHHHHhhcCCC-CCC--CCccc
Q 000873 1189 DDGMCCICYA-SEADA--QF--VP-CSHRSCHGCISRHLLNCL-RCF--FCNAT 1233 (1245)
Q Consensus 1189 de~~CpIC~~-~~~dp--V~--lP-CgH~fC~~CI~~~l~~~~-~CP--~CR~~ 1233 (1245)
.+..||||.+ ..-+| ++ -| |=|.+|.+|..|.....+ .|| -|..-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4557999974 44444 33 36 999999999999987755 799 67654
No 98
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=71.36 E-value=2.4 Score=56.51 Aligned_cols=49 Identities=31% Similarity=0.598 Sum_probs=37.6
Q ss_pred CCccCcccccc--ccCc-EEeCCCCcccHHHHHHhhcCC---C-------CCCCCccccccc
Q 000873 1189 DDGMCCICYAS--EADA-QFVPCSHRSCHGCISRHLLNC---L-------RCFFCNATVLEV 1237 (1245)
Q Consensus 1189 de~~CpIC~~~--~~dp-V~lPCgH~fC~~CI~~~l~~~---~-------~CP~CR~~i~~v 1237 (1245)
.++.|-||++. -..| +.|.|||+|-..|.++.+.+. + .||+|..+|..+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 35679999974 3444 558999999999988887652 1 599999998755
No 99
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.34 E-value=2.8 Score=47.10 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=43.0
Q ss_pred CCCccCccccccccCc----EEeCCCCcccHHHHHHhhcCCCCCCCCcccc--ccccccCCcCC
Q 000873 1188 ADDGMCCICYASEADA----QFVPCSHRSCHGCISRHLLNCLRCFFCNATV--LEVVKVDEKIE 1245 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dp----V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i--~~v~~i~~~~~ 1245 (1245)
...|+|||-.-.|.+- +.-+|||+|-..-+++.- ...|+.|.+++ ++|+.|+|..|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~E 170 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTEE 170 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeCCCHH
Confidence 3468999988777764 567999999887666544 56799999994 57788888654
No 100
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.71 E-value=2.4 Score=41.80 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=25.8
Q ss_pred eCCCCcccHHHHHHhhcCCCCCCCCccc
Q 000873 1206 VPCSHRSCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1206 lPCgH~fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
=-|.|.|-.-||.+|+.....||.|...
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 3699999999999999999999999876
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=68.51 E-value=1.5 Score=55.57 Aligned_cols=46 Identities=17% Similarity=0.483 Sum_probs=38.8
Q ss_pred ccCccccccccCcEEeCCCCcccHHHHHHhhcC---CCCCCCCcccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN---CLRCFFCNATVLE 1236 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~---~~~CP~CR~~i~~ 1236 (1245)
..||||.....+|+.+.|-|.||+.|+...+.. ...||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 459999999999999999999999999876654 3479999976553
No 102
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.06 E-value=4.5 Score=34.98 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=21.8
Q ss_pred ccCccccccccCcEE-eCCCCcccH--HHHHHhhcCC--CCCCCCccc
Q 000873 1191 GMCCICYASEADAQF-VPCSHRSCH--GCISRHLLNC--LRCFFCNAT 1233 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~-lPCgH~fC~--~CI~~~l~~~--~~CP~CR~~ 1233 (1245)
..|||.+..+.-||- ..|.|.-|. .-.-...... -.||+|++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 469999999999987 579998654 3333222222 279999875
No 103
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=66.72 E-value=2.3 Score=50.17 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=36.8
Q ss_pred CccCccccccc----cCcEEeCCCCcccHHHHHHhhcCC--CCCCCCccccccc
Q 000873 1190 DGMCCICYASE----ADAQFVPCSHRSCHGCISRHLLNC--LRCFFCNATVLEV 1237 (1245)
Q Consensus 1190 e~~CpIC~~~~----~dpV~lPCgH~fC~~CI~~~l~~~--~~CP~CR~~i~~v 1237 (1245)
+..|-.|.+.. ..--.|||.|+|--.|....++++ ++||-||.-++.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~ 418 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSM 418 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhc
Confidence 35699997653 334569999999999999998774 4899999655533
No 104
>smart00588 NEUZ domain in neuralized proteins.
Probab=63.76 E-value=1.1e+02 Score=31.38 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCCCeEEeCCCcEEEeecc-e--eeEEeCceeecC-EEEEEEEEEe-----cCeEEEEEecCCCC-CCCC-------CCC
Q 000873 116 ICGDVRIAKLPLLVESLAM-F--SSARANVCVWKG-KWMYEVTLET-----SGVQQLGWATLSCP-FTDH-------KGV 178 (1245)
Q Consensus 116 ~~~~l~LS~d~L~v~~~s~-~--~sVRAn~~V~sG-k~YFEV~I~s-----~G~irIG~at~~~~-l~~~-------~gv 178 (1245)
+..++.|++++.++..... | +-|.++.++..| ++ +|+|.. .|.++||+.+.+-. +... +.+
T Consensus 9 ~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~~--~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~~~~~dl 86 (123)
T smart00588 9 HGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELF--EVKIEKVVRKWSGALRFGVTTCDPATLRPASLPTNACPDL 86 (123)
T ss_pred cCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCEE--EEEEEEecCCccCceEEEEecCCcccccCccCcccCcccc
Confidence 4568999999999977543 4 346677888755 44 555543 37899999987532 2110 111
Q ss_pred cCCCCceeEeCCCcceecCCCcCCCC-CCCCCCEEEEEEeCCCCeEEEEEC
Q 000873 179 GDADDSYAFDGRRVKKWNKEAEPYGQ-SWVAGDIIGCCIDLDSDEISFYRN 228 (1245)
Q Consensus 179 G~d~~SwgY~G~~g~~~~~~~~~YG~-~f~~GDVIGC~LDld~g~I~FtkN 228 (1245)
-.-...|... .+. ....||+++..++ ..|.+.|.+|
T Consensus 87 ~~~~g~wv~~-------------~~~~~~~~g~~l~f~~~-~~G~v~~~vn 123 (123)
T smart00588 87 VDMSGFWAKA-------------LGEGLAEQGGILGLDVL-AEGEVVGVIN 123 (123)
T ss_pred cccCCcceEE-------------CChhhccCCCEEEEEEC-CCceEEEEeC
Confidence 1122233222 122 2367888887776 4677777766
No 105
>PLN02189 cellulose synthase
Probab=63.68 E-value=5.3 Score=52.99 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=35.1
Q ss_pred CccCcccccc----ccCcEEeCCCCc---ccHHHHHHhhcC-CCCCCCCcccccccc
Q 000873 1190 DGMCCICYAS----EADAQFVPCSHR---SCHGCISRHLLN-CLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1190 e~~CpIC~~~----~~dpV~lPCgH~---fC~~CI~~~l~~-~~~CP~CR~~i~~v~ 1238 (1245)
...|.||.+. ...-++..|.-. .|+.|..--... ++.||.|+++..+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3489999876 233367776654 799999654433 778999999988543
No 106
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.53 E-value=4.1 Score=45.74 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCccCccccccccCcEEeCCCCcccHHHHHHhhcC
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN 1223 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~ 1223 (1245)
+=..|++|..-.+|||+.|=||.||+.||-...+.
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 34579999999999999999999999999876543
No 107
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.42 E-value=4.9 Score=46.49 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=32.3
Q ss_pred ccCccccccccC---cEEeCCCCcccHHHHHHhhcC---CCCCCCCcc
Q 000873 1191 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLLN---CLRCFFCNA 1232 (1245)
Q Consensus 1191 ~~CpIC~~~~~d---pV~lPCgH~fC~~CI~~~l~~---~~~CP~CR~ 1232 (1245)
|.||+--+.-++ |+.+.|||+.-+.-+.+...+ ..+||+|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 689998665443 899999999999888776655 237999954
No 108
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=60.86 E-value=6.5 Score=45.54 Aligned_cols=50 Identities=8% Similarity=-0.108 Sum_probs=42.5
Q ss_pred ccCccccccccCcEEeCCCCc-ccHHHHHHhhcCCCCCCCCccccccccccCC
Q 000873 1191 GMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEVVKVDE 1242 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~-fC~~CI~~~l~~~~~CP~CR~~i~~v~~i~~ 1242 (1245)
..|..|..-....+..||+|+ ||-+|.. +.-+++||.|..-....++|.|
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i~g 394 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPING 394 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeecCC
Confidence 469999988888888999997 7999987 4458899999998888888876
No 109
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.17 E-value=10 Score=49.06 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCCccCccccccccCc-EEeCCCCcccHHHHHHhhcCCCCCCCCccc
Q 000873 1156 SKLGQLECFLSLVLCHIEAQEMERTRC-GRETDADDGMCCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1156 ~~i~~l~~~~~~l~~~~~~~e~e~~~~-~~~~~~de~~CpIC~~~~~dp-V~lPCgH~fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
..|++=+..++..++..+...++.... ...-+-....|..|-....=| |..-|||.+-..|.. .+...||-|+..
T Consensus 805 ~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 805 TIIEQDEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 445555555655554444333222110 001112235799998766666 668999999999987 456689999996
Q ss_pred cccccc
Q 000873 1234 VLEVVK 1239 (1245)
Q Consensus 1234 i~~v~~ 1239 (1245)
...+.+
T Consensus 882 ~~~~m~ 887 (933)
T KOG2114|consen 882 LRGVMD 887 (933)
T ss_pred hhhhHH
Confidence 655543
No 110
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=58.34 E-value=3 Score=55.74 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=40.6
Q ss_pred CCccCccccccccC-cEEeCCCCcccHHHHHHhhcCCCCCCCCccccc
Q 000873 1189 DDGMCCICYASEAD-AQFVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1235 (1245)
Q Consensus 1189 de~~CpIC~~~~~d-pV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~ 1235 (1245)
+-..|+||.+.+++ -.+.-|||-+|..|+..|+.....||.|+....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 44689999999994 567889999999999999999999999986533
No 111
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.95 E-value=5.5 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCCCcccHHHHHHhhcCCC---CCCCCc
Q 000873 1207 PCSHRSCHGCISRHLLNCL---RCFFCN 1231 (1245)
Q Consensus 1207 PCgH~fC~~CI~~~l~~~~---~CP~CR 1231 (1245)
.|||+|--.|+.+|...++ .||+||
T Consensus 25 ~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred chhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4999999999999998754 799999
No 112
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=56.85 E-value=5.6 Score=42.21 Aligned_cols=21 Identities=33% Similarity=0.698 Sum_probs=18.7
Q ss_pred CCccCccccccccCcEEeCCC
Q 000873 1189 DDGMCCICYASEADAQFVPCS 1209 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCg 1209 (1245)
|+..||||++.+.|+|.|-|+
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 456899999999999999875
No 113
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=55.73 E-value=6.7 Score=45.14 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=24.6
Q ss_pred CCCCcccHHHHHHhhcC-CCCCCCCccccc
Q 000873 1207 PCSHRSCHGCISRHLLN-CLRCFFCNATVL 1235 (1245)
Q Consensus 1207 PCgH~fC~~CI~~~l~~-~~~CP~CR~~i~ 1235 (1245)
||||..|.+|..+.... ...||-|..++.
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 89999999999998654 668999988753
No 114
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=9 Score=39.48 Aligned_cols=42 Identities=36% Similarity=0.740 Sum_probs=27.2
Q ss_pred CCCccCcccc-ccccCcEEeCCCCcc-------cHHHHHHhhcC-CC---CCCCCccc
Q 000873 1188 ADDGMCCICY-ASEADAQFVPCSHRS-------CHGCISRHLLN-CL---RCFFCNAT 1233 (1245)
Q Consensus 1188 ~de~~CpIC~-~~~~dpV~lPCgH~f-------C~~CI~~~l~~-~~---~CP~CR~~ 1233 (1245)
.++-+|-||. +.+.|- |||++ |..|-.+..+. ++ .|-.||..
T Consensus 63 ~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 5678899997 567776 78863 34444444443 33 48888865
No 115
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=14 Score=48.16 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=26.5
Q ss_pred CCCccCcccccc-ccCc-EEeCCCCcccHHHHHHhhc
Q 000873 1188 ADDGMCCICYAS-EADA-QFVPCSHRSCHGCISRHLL 1222 (1245)
Q Consensus 1188 ~de~~CpIC~~~-~~dp-V~lPCgH~fC~~CI~~~l~ 1222 (1245)
.....|-+|.-. ..-| +..||||.|-+.|+.+|..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 456779999753 3345 4579999999999999843
No 116
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=54.47 E-value=10 Score=43.92 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCCccCcccccc--------------ccC-----cEEeCCCCcccHHHHHHhhcC---------CCCCCCCcccccc
Q 000873 1188 ADDGMCCICYAS--------------EAD-----AQFVPCSHRSCHGCISRHLLN---------CLRCFFCNATVLE 1236 (1245)
Q Consensus 1188 ~de~~CpIC~~~--------------~~d-----pV~lPCgH~fC~~CI~~~l~~---------~~~CP~CR~~i~~ 1236 (1245)
+.+-.||+|... ..| -.|-||||+.-..+..-|..- ...||||-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 456779999753 112 157899999777777655321 2369999987643
No 117
>smart00589 PRY associated with SPRY domains.
Probab=53.59 E-value=14 Score=30.90 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=21.9
Q ss_pred eEEeCCCcCCCCeEEeCCCcEEEee
Q 000873 108 IVGLEESSICGDVRIAKLPLLVESL 132 (1245)
Q Consensus 108 ~V~LD~~~~~~~l~LS~d~L~v~~~ 132 (1245)
.|.||+.++++++.||+|+..+...
T Consensus 3 ~vtld~~tA~~~l~lS~d~~~v~~~ 27 (52)
T smart00589 3 DVTLDPDTAHPYLLLSEDRRSVRYG 27 (52)
T ss_pred CCEECcccCCCCeEECCCCCEEEEC
Confidence 5789999999999999999888643
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=53.35 E-value=6.7 Score=50.04 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=39.0
Q ss_pred CCCccCccccccccCc----EEeC---CCCcccHHHHHHhhcC---C---CCCCCCccccccccc
Q 000873 1188 ADDGMCCICYASEADA----QFVP---CSHRSCHGCISRHLLN---C---LRCFFCNATVLEVVK 1239 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~dp----V~lP---CgH~fC~~CI~~~l~~---~---~~CP~CR~~i~~v~~ 1239 (1245)
.+...|++|-....+| =+.| |+|.+|..||..+... . -.|+||..-|....+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 4557889998888774 2466 9999999999999654 1 169999987655443
No 119
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=17 Score=41.27 Aligned_cols=54 Identities=13% Similarity=-0.084 Sum_probs=46.9
Q ss_pred CCCCCCccCccccccccCcEEeCCCCcccHHHHHHhhcCCC-CCCCCcccccccc
Q 000873 1185 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCL-RCFFCNATVLEVV 1238 (1245)
Q Consensus 1185 ~~~~de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~-~CP~CR~~i~~v~ 1238 (1245)
.+.|+-..|.|-.++|++||+.|.|-+.-+.=|..|+..-+ .+|.-|.+++.-.
T Consensus 206 rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q 260 (284)
T KOG4642|consen 206 REVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQ 260 (284)
T ss_pred ccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHh
Confidence 44577788899999999999999999999999999998855 6999999987643
No 120
>PHA03096 p28-like protein; Provisional
Probab=50.33 E-value=6.9 Score=45.38 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred ccCccccccccC--------cEEeCCCCcccHHHHHHhhcC---CC---CCCCCccccccc
Q 000873 1191 GMCCICYASEAD--------AQFVPCSHRSCHGCISRHLLN---CL---RCFFCNATVLEV 1237 (1245)
Q Consensus 1191 ~~CpIC~~~~~d--------pV~lPCgH~fC~~CI~~~l~~---~~---~CP~CR~~i~~v 1237 (1245)
..|.||++...+ -..--|.|.||..||..|... .. .||.||..+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v 239 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFI 239 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHH
Confidence 569999975432 133469999999999988533 23 455555555444
No 121
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.58 E-value=15 Score=34.76 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCccCccccccc----cCcEEeCCCC---cccHHHHHHhhc-CCCCCCCCcccccccc
Q 000873 1189 DDGMCCICYASE----ADAQFVPCSH---RSCHGCISRHLL-NCLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1189 de~~CpIC~~~~----~dpV~lPCgH---~fC~~CI~~~l~-~~~~CP~CR~~i~~v~ 1238 (1245)
+...|.||.+.. .--+|.-|-. -.|+.|..--.. .++.||.|+++..+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 345799998642 2235666554 469999876544 4778999999977653
No 122
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=49.39 E-value=16 Score=38.93 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=35.4
Q ss_pred CCCCccCccccccccCcEEeCCCCc----c-cHHHHHHhhcCC--CCCCCCccccccc
Q 000873 1187 DADDGMCCICYASEADAQFVPCSHR----S-CHGCISRHLLNC--LRCFFCNATVLEV 1237 (1245)
Q Consensus 1187 ~~de~~CpIC~~~~~dpV~lPCgH~----f-C~~CI~~~l~~~--~~CP~CR~~i~~v 1237 (1245)
...+..|-||.+-.. +..-||.=. + -.+|+.+|+..+ ..|+.|++++.-+
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 356778999998754 445676532 2 459999998764 4799999986433
No 123
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.63 E-value=7 Score=44.96 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=34.3
Q ss_pred CccCcccccccc------CcEEeC--------CCCcccHHHHHHhhcCC-CCCCCCccc
Q 000873 1190 DGMCCICYASEA------DAQFVP--------CSHRSCHGCISRHLLNC-LRCFFCNAT 1233 (1245)
Q Consensus 1190 e~~CpIC~~~~~------dpV~lP--------CgH~fC~~CI~~~l~~~-~~CP~CR~~ 1233 (1245)
+.+|.||..... -|-++. |||..|..|+...+... ..|||||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 456999976554 255666 99999999999987664 589999974
No 124
>PLN02436 cellulose synthase A
Probab=48.41 E-value=12 Score=49.84 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=34.5
Q ss_pred CccCccccccc---cC-cEEeCCCCc---ccHHHHHHhhcC-CCCCCCCcccccccc
Q 000873 1190 DGMCCICYASE---AD-AQFVPCSHR---SCHGCISRHLLN-CLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1190 e~~CpIC~~~~---~d-pV~lPCgH~---fC~~CI~~~l~~-~~~CP~CR~~i~~v~ 1238 (1245)
...|.||.+.. .| -++..|... .|+.|..--... ++.||.|+++..+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34899998752 22 256776654 799999654433 678999999988543
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.90 E-value=10 Score=45.84 Aligned_cols=33 Identities=27% Similarity=0.840 Sum_probs=24.4
Q ss_pred CccCcccc-ccccCc---EEeCCCCcccHHHHHHhhc
Q 000873 1190 DGMCCICY-ASEADA---QFVPCSHRSCHGCISRHLL 1222 (1245)
Q Consensus 1190 e~~CpIC~-~~~~dp---V~lPCgH~fC~~CI~~~l~ 1222 (1245)
...|.||+ +.+..- ...-|+|.||..|.++|..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46799999 333221 2356999999999999965
No 126
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=45.23 E-value=77 Score=29.28 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=30.7
Q ss_pred cCCCCeEEeCCCcEEEeecc--eeeEEeCceeecCEEEEEEEEEe-----cCeEEEEEecC
Q 000873 115 SICGDVRIAKLPLLVESLAM--FSSARANVCVWKGKWMYEVTLET-----SGVQQLGWATL 168 (1245)
Q Consensus 115 ~~~~~l~LS~d~L~v~~~s~--~~sVRAn~~V~sGk~YFEV~I~s-----~G~irIG~at~ 168 (1245)
.+..++.|++|+.++..... -+-|.++.++..|. .|+|+|.. .|.++||+++.
T Consensus 8 ~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E-~~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 8 VHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGE-KFEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS
T ss_pred ccCCCEEEcCCCeEEEecccCCceEEEecCCccCCC-EEEEEEEecCCCceeEEEEeeEcc
Confidence 34568999999999987553 35677888887652 34555543 37899999874
No 127
>PHA02862 5L protein; Provisional
Probab=40.36 E-value=22 Score=37.43 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=32.4
Q ss_pred ccCccccccccCcEEeCCCCc-----ccHHHHHHhhcCC--CCCCCCccccc
Q 000873 1191 GMCCICYASEADAQFVPCSHR-----SCHGCISRHLLNC--LRCFFCNATVL 1235 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~lPCgH~-----fC~~CI~~~l~~~--~~CP~CR~~i~ 1235 (1245)
..|-||.+.-.+. .-||.=. .-++|+.+|+..+ ..||+|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4699999876555 4787542 2459999998664 37999999853
No 128
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=40.27 E-value=17 Score=42.09 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=37.0
Q ss_pred CccCccccc----cccCcEEeCCCCcccHHHHHHhhcCCCCCCCCccccccc
Q 000873 1190 DGMCCICYA----SEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1190 e~~CpIC~~----~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v 1237 (1245)
+..||||.. -+.+|..++|||..=..|...-....-+||.|.. +.+.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 445999975 4667888999999878888877666689999999 5444
No 129
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.68 E-value=8 Score=44.69 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=23.6
Q ss_pred CccCccccccccCcEEeCC---CCc--ccHHHHHHhhcCCCCCCCCccc
Q 000873 1190 DGMCCICYASEADAQFVPC---SHR--SCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPC---gH~--fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
...||+|...+.=.++..= |+. +|.-|-..|....-.||+|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4799999999887777765 554 5999999988777799999875
No 130
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=11 Score=43.22 Aligned_cols=33 Identities=30% Similarity=0.713 Sum_probs=28.2
Q ss_pred CccCccccccccCcEEeCC----CCcccHHHHHHhhc
Q 000873 1190 DGMCCICYASEADAQFVPC----SHRSCHGCISRHLL 1222 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPC----gH~fC~~CI~~~l~ 1222 (1245)
-..|.+|.+...|.-|+.| +|.||.-|-+...+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 3679999999999999888 79999999777654
No 131
>PLN02400 cellulose synthase
Probab=39.59 E-value=17 Score=48.76 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=32.8
Q ss_pred CccCcccccccc---C-cEEeCCCCc---ccHHHHHHhh-cCCCCCCCCccccccc
Q 000873 1190 DGMCCICYASEA---D-AQFVPCSHR---SCHGCISRHL-LNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1190 e~~CpIC~~~~~---d-pV~lPCgH~---fC~~CI~~~l-~~~~~CP~CR~~i~~v 1237 (1245)
...|.||.+..- | -++.-|... .|+.|..--. ..++.||.|++...+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 348999987521 1 256666655 7999985322 2367899999998754
No 132
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.21 E-value=22 Score=47.67 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=33.2
Q ss_pred CccCcccccccc---C-cEEeCCCCc---ccHHHHHHhh-cCCCCCCCCccccccc
Q 000873 1190 DGMCCICYASEA---D-AQFVPCSHR---SCHGCISRHL-LNCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1190 e~~CpIC~~~~~---d-pV~lPCgH~---fC~~CI~~~l-~~~~~CP~CR~~i~~v 1237 (1245)
...|.||.+..- | -++.-|... .|+.|..=-. ..++.||.|+++..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 348999987521 1 256666665 7999985433 3377899999998744
No 133
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.78 E-value=19 Score=44.29 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.7
Q ss_pred CCCccCccccccccC-cEEeCCCCcccHHHHHHhhcC
Q 000873 1188 ADDGMCCICYASEAD-AQFVPCSHRSCHGCISRHLLN 1223 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~d-pV~lPCgH~fC~~CI~~~l~~ 1223 (1245)
..+..|-||.+...+ .+.+.|||.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 455789999988875 788999999999999998754
No 134
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.00 E-value=24 Score=38.08 Aligned_cols=45 Identities=27% Similarity=0.688 Sum_probs=34.0
Q ss_pred ccCccccccccCcEE-------eCCCCcccHHHHHHhhcC---C--------CCCCCCccccc
Q 000873 1191 GMCCICYASEADAQF-------VPCSHRSCHGCISRHLLN---C--------LRCFFCNATVL 1235 (1245)
Q Consensus 1191 ~~CpIC~~~~~dpV~-------lPCgH~fC~~CI~~~l~~---~--------~~CP~CR~~i~ 1235 (1245)
..|-|||...-|-.+ ..||..|-.-|+..|+.+ + +.||+|-.||.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 459999987655432 469999989999999753 1 25999999975
No 135
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=32.51 E-value=21 Score=30.90 Aligned_cols=42 Identities=29% Similarity=0.691 Sum_probs=24.2
Q ss_pred CccccccccCcEEeCCC-CcccHHHHHHhhcCCCCCCCCcccccc
Q 000873 1193 CCICYASEADAQFVPCS-HRSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1193 CpIC~~~~~dpV~lPCg-H~fC~~CI~~~l~~~~~CP~CR~~i~~ 1236 (1245)
|.-|- +.+--.+.|+ |--|..|+..-+..+..||+|..++-.
T Consensus 5 CKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred Chhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 44443 3333345565 567999999988888999999998743
No 136
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.73 E-value=30 Score=41.70 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=30.0
Q ss_pred CccccccccCcEEeCCCCcccHHHHHHhhcC--CCCCCCCccc
Q 000873 1193 CCICYASEADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNAT 1233 (1245)
Q Consensus 1193 CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~--~~~CP~CR~~ 1233 (1245)
+.+-+.--.--|++.|||-|=.+||.+|+-. ...||.|...
T Consensus 12 ds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 12 DSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred eeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3333333344588999999999999999852 3479999865
No 137
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=29.97 E-value=24 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCccCccccccccCcEEeCCCCcccHHHHHHhhcCC--CCCCCCccccc
Q 000873 1189 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNC--LRCFFCNATVL 1235 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~--~~CP~CR~~i~ 1235 (1245)
+.+.||.|.. --|. ...+.-|...|.... -.||+|.+.+.
T Consensus 1 ~~f~CP~C~~-~~~~------~~L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGK-GFSE------SSLVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCC-ccCH------HHHHHHHHhHCcCCCCCccCCCchhhhh
Confidence 4588999997 3332 234677788887553 36999987544
No 138
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.26 E-value=23 Score=41.66 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=35.3
Q ss_pred CCccCccccccccCcEEe---CCCCc--ccHHHHHHhhcCCCCCCCCccc
Q 000873 1189 DDGMCCICYASEADAQFV---PCSHR--SCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1189 de~~CpIC~~~~~dpV~l---PCgH~--fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
....||+|...+.-.|+. .-|+. .|.-|-..|-...-.||+|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 467899999998766542 34555 4999999998888899999874
No 139
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.82 E-value=17 Score=42.09 Aligned_cols=48 Identities=25% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCccCccccccccC-c--EEeCCCCcccHHHHHHhhcC-----------------------CCCCCCCcccccc
Q 000873 1189 DDGMCCICYASEAD-A--QFVPCSHRSCHGCISRHLLN-----------------------CLRCFFCNATVLE 1236 (1245)
Q Consensus 1189 de~~CpIC~~~~~d-p--V~lPCgH~fC~~CI~~~l~~-----------------------~~~CP~CR~~i~~ 1236 (1245)
....|.||+--+.+ | ..++|-|-+-..|+.|++.. .-.||+||.+|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34679999654443 4 34799999999999998531 1149999998753
No 140
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.17 E-value=18 Score=42.50 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=34.4
Q ss_pred CccCccccccccCcEEeC----CCCc--ccHHHHHHhhcCCCCCCCCccc
Q 000873 1190 DGMCCICYASEADAQFVP----CSHR--SCHGCISRHLLNCLRCFFCNAT 1233 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lP----CgH~--fC~~CI~~~l~~~~~CP~CR~~ 1233 (1245)
...||+|...+.-.++.. =|+. .|.-|-..|-...-+||+|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 458999999886655433 4554 5999999998888899999875
No 141
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=26.96 E-value=8.6e+02 Score=31.47 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHhhcC--CCC--CCCCCCCCCCCchh
Q 000873 480 YESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNR--GAD--RSLPPPGVSSNSVL 555 (1245)
Q Consensus 480 ~e~~~~~~~~~l~~~~~~ve~~q~~l~~ll~~~~~~~~~~~~~~~~fr~fl~~~~~~nr--g~~--~~~~pp~~~~~~v~ 555 (1245)
.......+...|+..+..+.+.=.+|++-|+...+.+ .+++.+|+-..+..|. +.. + .-|..+++.+.|
T Consensus 29 ~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~s------R~~~L~w~a~~l~~N~~R~k~~~~-~~~~~~aSDGFm 101 (629)
T PF10408_consen 29 NQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPES------RERVLSWFAQILNANAKRAKMWLQ-VDPRTVASDGFM 101 (629)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHT-GGGGSS--S---GGGS--HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhH------HHHHHHHHHHHHHhchhhhhhhhc-cccccCCCcHHH
Confidence 3445666778888888888777777877777532222 5788888888886664 444 3 456677888899
Q ss_pred hHHHHHHHHHhhcc
Q 000873 556 VSLYTVILHFLSEG 569 (1245)
Q Consensus 556 ~~~~~~~l~~~~~~ 569 (1245)
+.+..+|||++.+-
T Consensus 102 lNl~~VLl~L~~Pf 115 (629)
T PF10408_consen 102 LNLTAVLLRLCQPF 115 (629)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997765
No 142
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=25.62 E-value=42 Score=28.63 Aligned_cols=38 Identities=26% Similarity=0.771 Sum_probs=22.5
Q ss_pred Ccccccccc--CcEEeCCCCc-----ccHHHHHHhhcC--CCCCCCC
Q 000873 1193 CCICYASEA--DAQFVPCSHR-----SCHGCISRHLLN--CLRCFFC 1230 (1245)
Q Consensus 1193 CpIC~~~~~--dpV~lPCgH~-----fC~~CI~~~l~~--~~~CP~C 1230 (1245)
|-||++... +|.+.||+=. .-.+|+.+|... +.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567876533 2688897632 244899999874 4579987
No 143
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=25.08 E-value=4.7e+02 Score=34.21 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=56.7
Q ss_pred CCCCcHHHHHHHHHHH-HhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHhhhhh-----hHHHhHHHHHH
Q 000873 958 SSSSSVIFQRLLREAC-INDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCC-----VIFDLSCNLTR 1031 (1245)
Q Consensus 958 ~~~~s~~~q~~l~~~~-~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~~~~~e~qqr~c~-----s~f~Ls~~t~r 1031 (1245)
.-|||-.-++++.+.. ..|.+.|.--++|+++| |+-+|--..+++|.+. ..+..-.+.-. -.|+|-.-.+.
T Consensus 517 vTCPNlPl~eLl~qL~~~~n~El~~Di~~Ril~d--fs~~~It~~~k~l~~~-dl~~~I~~li~~~~~~q~~~Ll~~vID 593 (670)
T PF10395_consen 517 VTCPNLPLDELLQQLFTIENDELFLDISLRILQD--FSKDEITQEIKKLNKV-DLNNFINFLIKLNNNEQLWQLLSLVID 593 (670)
T ss_pred ccCCCCcHHHHHHHHHhccchHHHHHHHHHHHHH--hhHHHHHHHHHhhccc-cHHHHHHHHhccCCccchHHHHHHHhh
Confidence 3678877788888876 78899999999999987 4556666666666221 11111111110 12333222222
Q ss_pred HHHHHhhhcccccCCChhhHHHHHHHHHHHHHhhhc
Q 000873 1032 VLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVT 1067 (1245)
Q Consensus 1032 ~Le~~T~~ip~~F~~p~~~iv~RLa~MLnynL~~l~ 1067 (1245)
. -..|-.+ .+++.||.+.++.=+..++
T Consensus 594 ~--------~GLfn~~-~~~l~~L~~~Id~kv~~l~ 620 (670)
T PF10395_consen 594 S--------NGLFNWD-METLEKLSEIIDSKVEVLT 620 (670)
T ss_pred c--------cccccCC-HHHHHHHHHHHHHHHHHHH
Confidence 2 2224433 4688888888887776664
No 144
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.44 E-value=53 Score=44.20 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCccCccccccccC----cEEeCCCCc---ccHHHHHHhhc-CCCCCCCCccccccc
Q 000873 1189 DDGMCCICYASEAD----AQFVPCSHR---SCHGCISRHLL-NCLRCFFCNATVLEV 1237 (1245)
Q Consensus 1189 de~~CpIC~~~~~d----pV~lPCgH~---fC~~CI~~~l~-~~~~CP~CR~~i~~v 1237 (1245)
....|.||.+..-- -++.-|... .|+.|..--.. .++.||.|+++..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~ 70 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRH 70 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 45679999875211 145666554 79999954333 367899999998754
No 145
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.36 E-value=25 Score=42.30 Aligned_cols=8 Identities=38% Similarity=0.600 Sum_probs=2.0
Q ss_pred EEECCeee
Q 000873 225 FYRNGVSL 232 (1245)
Q Consensus 225 FtkNG~~L 232 (1245)
+|-||+.+
T Consensus 181 LTTNGVli 188 (416)
T PF04710_consen 181 LTTNGVLI 188 (416)
T ss_dssp --SS-EEE
T ss_pred ccccceEE
Confidence 33344443
No 146
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=4.5e+02 Score=33.71 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000873 961 SSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQE 1007 (1245)
Q Consensus 961 ~s~~~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~ 1007 (1245)
-..+|...=.+.+..+.+.|..-++.|=+.-+....-.+.-+..|-+
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 34445555555666666666666665555555555555554444443
No 147
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.67 E-value=9.9 Score=35.34 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=24.4
Q ss_pred CccCccccccccCcEEeCCCCcccHHHHHHhhcCCCCCCCCcccccccc
Q 000873 1190 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1238 (1245)
Q Consensus 1190 e~~CpIC~~~~~dpV~lPCgH~fC~~CI~~~l~~~~~CP~CR~~i~~v~ 1238 (1245)
|..||.|...|. + .-||-.|..|-... .....||-|.++++...
T Consensus 1 e~~CP~C~~~L~-~---~~~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 1 ENTCPKCQQELE-W---QGGHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp --B-SSS-SBEE-E---ETTEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CCcCCCCCCccE-E---eCCEEECccccccc-eecccCCCcccHHHHHH
Confidence 457999997643 2 23788899997632 23457999999988664
No 148
>PLN02195 cellulose synthase A
Probab=23.34 E-value=62 Score=43.33 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=31.6
Q ss_pred CccCcccccc-----ccCcEEeC---CCCcccHHHHHHhh-cCCCCCCCCcccccc
Q 000873 1190 DGMCCICYAS-----EADAQFVP---CSHRSCHGCISRHL-LNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1190 e~~CpIC~~~-----~~dpV~lP---CgH~fC~~CI~~~l-~~~~~CP~CR~~i~~ 1236 (1245)
...|.||.+. +-+ ++.- |+--.|+.|..=-. ..++.||.|+++..+
T Consensus 6 ~~~c~~cgd~~~~~~~g~-~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGE-AFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCC-eEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 3479999873 223 3555 45558999985332 337789999999873
No 149
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.56 E-value=53 Score=38.84 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=10.8
Q ss_pred CCCccCccccccccC
Q 000873 1188 ADDGMCCICYASEAD 1202 (1245)
Q Consensus 1188 ~de~~CpIC~~~~~d 1202 (1245)
..+.+||+|.+...-
T Consensus 13 dl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG 27 (475)
T ss_pred ccccccccccCcccc
Confidence 345789999986543
No 150
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.01 E-value=4e+02 Score=25.22 Aligned_cols=28 Identities=11% Similarity=0.366 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhHh
Q 000873 801 EQLKRLKEARNNYREEVIDCVRHCAWYR 828 (1245)
Q Consensus 801 ~~~~~~k~~~~~~~e~l~~~aR~~aw~r 828 (1245)
+-.+.+.+.-+.|+..-.+..|.+.|-+
T Consensus 38 ~kt~~L~~~a~~F~k~a~~l~r~~~~~~ 65 (89)
T PF00957_consen 38 DKTEELSDNAKQFKKNAKKLKRKMWWRN 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888888888888843
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.82 E-value=57 Score=36.95 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=21.1
Q ss_pred cccHHHHHHhhcCCCCCCCCcccc
Q 000873 1211 RSCHGCISRHLLNCLRCFFCNATV 1234 (1245)
Q Consensus 1211 ~fC~~CI~~~l~~~~~CP~CR~~i 1234 (1245)
..|.+|-.+.-.|-+.||.|++.-
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred chhHhHHHHHhcCCCCCccccccc
Confidence 469999999988999999999864
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=20.55 E-value=1.5e+03 Score=27.18 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhhhhHhhhhccHhHHhhhHHHHHHHHHHhhccCCCCC-ccccchHHHHHHHHHHHhhhccCCcccChhhH
Q 000873 813 YREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDS-VFIYIPEFYLEALVTFVVTHFNDPRISSADLR 891 (1245)
Q Consensus 813 ~~e~l~~~aR~~aw~r~~lf~~~~q~~~~~~~~WLlrl~~~~s~~~~-~F~~lPEfylE~iv~Fl~~~~~~p~I~~~~~~ 891 (1245)
..+...+.+|.+.-++.++++..-.. |. |+ .-...=|.|-+|+..-|..++ .-+.-+.+
T Consensus 34 ~~k~~eeisK~L~~mK~IL~G~~e~e-------p~----------~e~v~qLa~Ei~~~dll~~Li~~L---~~L~fEsr 93 (335)
T PF08569_consen 34 REKAQEEISKYLQQMKEILYGDGEPE-------PN----------PEQVAQLAQEIYRSDLLYLLIRNL---PKLDFESR 93 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SS---------------------HHHHHHHHHHHHHHTHHHHHHHTG---GGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCC-------CC----------HHHHHHHHHHHHHhCHHHHHHHHh---hhCCCccc
Confidence 34455666777777788888774311 11 00 112233566666665555532 13455567
Q ss_pred HHHHHHHHHHhcCh---h---hHHHhhcC-HHHHHhhHHHhhccccCCCcccchhHHhhhccccCCccCcCCCCCCCcHH
Q 000873 892 DLLLQSISVLVQYK---D---YLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVI 964 (1245)
Q Consensus 892 d~lvq~l~~~l~~~---~---~i~~fe~n-~~~~~~Lv~aLl~~y~~R~wi~~~~iLlrl~~g~gFa~rk~~~~~~~s~~ 964 (1245)
....+....+++.. . .++-+++| |. ++..|+++|++.--+...+..+|-|- .
T Consensus 94 Kdv~~if~~llr~~~~~~~~p~v~yl~~~~pe----il~~L~~gy~~~dial~~g~mlRec~-----------------k 152 (335)
T PF08569_consen 94 KDVAQIFSNLLRRQIGSRSPPTVDYLERHRPE----ILDILLRGYENPDIALNCGDMLRECI-----------------K 152 (335)
T ss_dssp HHHHHHHHHHHT--BTTB--HHHHHHHT--TH----HHHHHHHGGGSTTTHHHHHHHHHHHT-----------------T
T ss_pred ccHHHHHHHHHhhccCCCCCchHHHHHhCCHH----HHHHHHHHhcCccccchHHHHHHHHH-----------------h
Confidence 77777777777642 1 24445555 54 56678889987655555666666661 1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 000873 965 FQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEK 1008 (1245)
Q Consensus 965 ~q~~l~~~~~~n~~fF~rFlN~LlNDl~~lldEfl~~l~eIq~~ 1008 (1245)
| +.+.+..-. .+.|-+|.+.+-+..-..-++++..++++-..
T Consensus 153 ~-e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~ 194 (335)
T PF08569_consen 153 H-ESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTR 194 (335)
T ss_dssp S-HHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS
T ss_pred h-HHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc
Confidence 2 223333333 45667777777666666666677777776553
Done!