Query 000873
Match_columns 1245
No_of_seqs 379 out of 1866
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 16:20:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000873.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_643-646//hhsearch_pdb/000873hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 1.0 1 1 593.1 46.8 446 749-1236 387-938 (968)
2 3toj_A SET1/ASH2 histone methy 1.0 1 1 300.2 14.6 191 104-305 8-212 (213)
3 2yyo_A SPRY domain-containing 1.0 1 1 257.1 15.5 155 114-275 5-171 (171)
4 3emw_A SPRY domain-containing 1.0 1 1 195.6 16.9 155 106-264 41-214 (217)
5 2jk9_A SPRY domain-containing 1.0 1 1 189.8 16.9 156 106-265 30-206 (212)
6 2afj_A Gene rich cluster, C9 g 1.0 1 1 184.7 10.9 157 106-266 38-213 (226)
7 2vok_A 52 kDa RO protein; poly 1.0 1 1 117.3 14.1 146 107-256 9-171 (188)
8 2wl1_A Pyrin, marenostrin; amy 1.0 1 1 116.8 13.9 145 107-256 13-175 (191)
9 2fbe_A Predicted: similar to R 1.0 1 1 114.8 15.6 143 108-255 11-171 (201)
10 3uv9_A TRIM5alpha, tripartite 1.0 1 1 111.0 13.7 145 107-256 12-174 (186)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=1.00 E-value=1 Score=593.05 Aligned_cols=446 Identities=17% Similarity=0.169 Sum_probs=368.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4499899999999984122469999889997999999999999999997449999999-999866699999987321337
Q 000873 749 LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRL-KEARNNYREEVIDCVRHCAWY 827 (1245)
Q Consensus 749 ~~~~elld~~~~~yhl~~~~~~~~~~~~~~~~~~~~~~l~et~~~i~~~~~~~~~~~~-k~~~~~~~e~l~~~~R~~aw~ 827 (1245)
+=++|.|+..+..-|+|.++.+.++....+++.++.+.|+..++. +...+...++ .+..+.+.+++......+..+
T Consensus 387 nFItecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~ 463 (968)
T 3m62_A 387 NFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKI---AANHDVFARFITAQLSKMEKALKTTESLRFAL 463 (968)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 831899999999998574777888999999999999999999844---14896999999999999999999999999999
Q ss_pred HHHHCCHHHHHHHH----HHHHHHHHHHHC------------C-----------------CCCCCCCCCCHHHHHHHHHH
Q ss_conf 65651076785668----899999987202------------4-----------------78897444442798999999
Q 000873 828 RISLFSRWKQRGMY----ATCVWVVQLLLV------------L-----------------SKVDSVFIYIPEFYLEALVT 874 (1245)
Q Consensus 828 r~~lf~~~~q~~~~----~~~~WLlrv~~~------------~-----------------s~~~~~F~~lPEfyiE~iv~ 874 (1245)
.+.+.++..|.+++ ++++||+|++++ + +++|.+|+|+|||||||+++
T Consensus 464 ~~~l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d 543 (968)
T 3m62_A 464 QGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVN 543 (968)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 98507999999999999999999999854555688877467787332332123200003456986776373899985999
Q ss_pred HHHH-HCCCCCC-CCHHHHHHHHHHHHHHHCCHHHH-----------------------------HHHHCCHHHHHHHHH
Q ss_conf 9866-2169952-48246799999999982591238-----------------------------776219999972389
Q 000873 875 FVVT-HFNDPRI-SSADLRDLLLQSISVLVQYKDYL-----------------------------AAFESNEAATLRLPK 923 (1245)
Q Consensus 875 Fl~~-~~~~p~I-~~~~~~d~lvq~l~~ll~~~~~i-----------------------------~~fE~n~~~~~~Lv~ 923 (1245)
|+.+ ..+.|.+ +.....+++++++++|+++|+|| ++|++|+.++.+|++
T Consensus 544 ~~~F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~ 623 (968)
T 3m62_A 544 YSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLY 623 (968)
T ss_dssp HHHHHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf 99999970898543441066899999999379132178888999999987405665568862789998608999998999
Q ss_pred HHHCCCCC----------------CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 85403367----------------88630023775310356776676778998729999999999870898347899999
Q 000873 924 ALISAFDN----------------RSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRL 987 (1245)
Q Consensus 924 aLL~~y~~----------------R~wi~~~~iL~rl~~g~gF~~rk~~~~~~~s~~~q~~l~~~~~~n~~fF~rFlN~L 987 (1245)
|||++|.+ ||.|.. ||..+|+ .++.||+++..++++|+++|+||+|+|
T Consensus 624 aLm~fYvdvE~TG~~~qFYdKFn~R~~I~~--Ilk~LW~--------------~~~~yr~~l~~~a~~~~~~FvrFvNlL 687 (968)
T 3m62_A 624 ALLDFYVIVEKTGSSSQFYDKFNSRYSISI--ILEELYY--------------KIPSYKNQLIWQSQNNADFFVRFVARM 687 (968)
T ss_dssp HHHHHHHHGGGCCSCCSSSCHHHHHHHHHH--HHHHHHH--------------HCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHHHHH--------------CCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999998644216885217875331989999--9999971--------------689999999999974838899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 654679999987999999877535----------------28------87645455777289999999998421254657
Q 000873 988 FNTLSWTMTEFSISIREMQEKYQV----------------SE------FQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFL 1045 (1245)
Q Consensus 988 lNDl~~lldEfl~~L~eIq~~~~~----------------~e------~qqr~c~s~f~Ls~~t~r~Le~~T~~ip~~Fl 1045 (1245)
|||+||+|||++..|++||+.|.. ++ ..+|+|++|++|+++|++||++||+++|++|+
T Consensus 688 iND~tyLLDEsL~~L~~I~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~ 767 (968)
T 3m62_A 688 LNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFV 767 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
T ss_conf 99899999999987899999999985132057765366799999999998756478887478999999999997543416
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 89156899999999999853038741110000001246774366--8100235699999770343322223755651254
Q 000873 1046 SGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKV--NRGMILAPLVGIILNLLDASAESECGVQNDVVGV 1123 (1245)
Q Consensus 1046 ~p~e~lv~RLa~MLny~L~~l~~~~~~~~~~~~lk~~~~~~ek~--~~~~lL~~i~gIyLnL~~~~~f~~~~~~~~~~~a 1123 (1245)
+|+ +|+|||+||||||++++| |||. ++||+ |||+| +|+.+|.+||+||+||...++| +.|
T Consensus 768 ~pe--iv~RlA~MLnynL~~LvG-Pk~~--~LKVk----npekY~F~Pk~lL~~i~~IYlnL~~~~~F---------~~a 829 (968)
T 3m62_A 768 TPE--IVYRLASMLNYNLESLVG-PKCG--ELKVK----DPQSYSFNPKDLLKALTTVYINLSEQSEF---------ISA 829 (968)
T ss_dssp SHH--HHHHHHHHHHHHHHHHHS-HHHH--TCCCS----CGGGGTCCHHHHHHHHHHHHHHTTTCHHH---------HHH
T ss_pred CHH--HHHHHHHHHHHHHHHHCC-CCCC--CCCCC----CHHHCCCCHHHHHHHHHHHHHHCCCCHHH---------HHH
T ss_conf 699--999999999999998558-6422--36648----87644979899999999997603577399---------999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20468893001338888731014676798897899999999999999999999876214999999775473223346681
Q 000873 1124 FSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADA 1203 (1245)
Q Consensus 1124 vas~D~~sf~~~~f~~l~~i~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~e~e~~~~~~~~~~de~lCpIC~~~~~dp 1203 (1245)
|| .|+|||..+.|+++..+... ..|.++.+.+++|..|++++++.+.+.++++.+ ..+.|++|+|||..++|.||
T Consensus 830 Va-~DgRSy~~elF~~a~~il~~--~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~--~~~iP~~F~cPIs~~lM~DP 904 (968)
T 3m62_A 830 VA-KDERSFNRNLFVRAVDILGR--KTGLASPEFIEKLLNFANKAEEQRKADEEEDLE--YGDVPDEFLDPLMYTIMKDP 904 (968)
T ss_dssp HH-HCTTTCCHHHHHHHHHHHTT--STTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSCGGGBCTTTCSBCSSE
T ss_pred HH-HCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHCCCCHHHHHHCC
T ss_conf 98-05888899999999999998--606999999999999999999999998765312--34996776792414398498
Q ss_pred EEECCCC-CCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7807997-32388899963189999888434423
Q 000873 1204 QFVPCSH-RSCHGCISRHLLNCLRCFFCNATVLE 1236 (1245)
Q Consensus 1204 V~lPCgH-~fC~~CI~~hl~~~~~CPfCR~~i~~ 1236 (1245)
|++|.|| ++.+++|.+|+.++++||+.|++++.
T Consensus 905 VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 905 VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred EECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6728899888799999998359989899797872
No 2
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=1.00 E-value=1 Score=300.18 Aligned_cols=191 Identities=28% Similarity=0.478 Sum_probs=170.3
Q ss_pred CCCCEEEECCCCCCCCEEEECCCCEEEEECCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 898528848776889839928993899506520598292121597999999984---19189998449999999999768
Q 000873 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFTDHKGVGD 180 (1245)
Q Consensus 104 ~gp~~V~LD~~~~~~~l~IS~d~L~v~~~~~~ssvRAt~~V~sGkwYFEV~I~s---~G~irIGvat~~~~l~~~~giG~ 180 (1245)
+.+..|+||+.++++.+.||+|++++++..+|++||++.++.+|+|||||+|.. .+.++|||++..++.+. ++|+
T Consensus 8 ~~~~~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~--~~G~ 85 (213)
T 3toj_A 8 CLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQA--PLGY 85 (213)
T ss_dssp EEECCCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTS--CTTS
T ss_pred HCCCEEEECHHHCCCCEEECCCCCEEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCC--CCCC
T ss_conf 35770796035178988986998489968853479958776597499999980058886379973357765655--8878
Q ss_pred CCCCEEEECCCCCEECCC-CCCCCCCCCCCCEEEEEEECCC--------CEEEEEECCEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 998426827994000488-7677987789999999996899--------7699998790420100033346899838999
Q 000873 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------DEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1245)
Q Consensus 181 d~~Sygy~g~~g~~~h~~-~~~yG~~f~~GDVIGC~IDld~--------gtI~FtkNG~~LGvAF~~i~~~~~~~~lYPa 251 (1245)
+.+||||+++++++||++ ..+||++|..||||||+||++. ++|+||+||+.+|+||+++.. +.|||+
T Consensus 86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~----~~lyPa 161 (213)
T 3toj_A 86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFE----GVYFPA 161 (213)
T ss_dssp STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCS----SCBEEE
T ss_pred CCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEECCCC----CCEEEE
T ss_conf 8886778889970993992765677779999999999858876665776199999699053133774889----969999
Q ss_pred EEECCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99379978999529999745899--9212787887317888999999996227400
Q 000873 252 VSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPVNVFATQLLQCLSRLLGMDKA 305 (1245)
Q Consensus 252 VSl~~g~~V~vNFG~~PFkYpp~--Gf~PL~~pP~~~~~a~~l~~~~~~l~~~~~~ 305 (1245)
||+..++.+++|||+ ||+|||+ +|+|+.+. ..+.+.+++++|++++.++
T Consensus 162 vsl~~~~~v~~NFG~-~F~~~p~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~ 212 (213)
T 3toj_A 162 ISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDM----GWGAVVEHTLADVLYHVET 212 (213)
T ss_dssp EEEESSCEEEEECSS-SCSSCCSSCCCEEGGGG----GEEEECCC-----------
T ss_pred EECCCCCEEEEECCC-CCCCCCCCCCEECHHHH----CCCCCCHHHHHHHHHHHHC
T ss_conf 990789999998899-98658998861757782----2334217889888888644
No 3
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=257.12 Aligned_cols=155 Identities=24% Similarity=0.310 Sum_probs=140.4
Q ss_pred CCCCCCEEEECCCCEEEEEC-CEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 76889839928993899506-5205982921215979999999841---9189998449999999999768998426827
Q 000873 114 SSICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGDADDSYAFDG 189 (1245)
Q Consensus 114 ~~~~~~l~IS~d~L~v~~~~-~~ssvRAt~~V~sGkwYFEV~I~s~---G~irIGvat~~~~l~~~~giG~d~~Sygy~g 189 (1245)
.+.+..+.+++|.|++++.+ .|+++||+.++.+|+|||||+|.+. +.++|||++..+++++ .+|++.+||||++
T Consensus 5 ~dr~~~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~--~~G~d~~S~gy~~ 82 (171)
T 2yyo_A 5 SSGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDH--QPGWLPDSVAYHA 82 (171)
T ss_dssp -CEEESEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTS--CTTSSTTCEEEET
T ss_pred CCCCCEEEECCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCC--CCCCCCCEEEEEC
T ss_conf 45763379859999996888965699979987899789999999789885799984279988756--8985688899994
Q ss_pred CCCCEECCC--CCCCCCCCCCCCEEEEEEECC-----CCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECC-CCEEE
Q ss_conf 994000488--767798778999999999689-----9769999879042010003334689983899999379-97899
Q 000873 190 RRVKKWNKE--AEPYGQSWVAGDIIGCCIDLD-----SDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ-GERCV 261 (1245)
Q Consensus 190 ~~g~~~h~~--~~~yG~~f~~GDVIGC~IDld-----~gtI~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~-g~~V~ 261 (1245)
+++++||+. ...||++|..||||||+||++ .++|+||+||+.+|+||.+++ ...|||+|++.. +++|+
T Consensus 83 ~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~----~~~lyPaV~l~~~g~~v~ 158 (171)
T 2yyo_A 83 DDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMS----PDGLFPAVGMHSLGEEVR 158 (171)
T ss_dssp TTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSC----SSSCEEEEEECSTTEEEE
T ss_pred CCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCEECCCEECCCC----CCCEEEEEEEECCCCEEE
T ss_conf 9996993999888478887789999999973667888379999989989672131886----787899999856998999
Q ss_pred EECCCCCCCCCCCC
Q ss_conf 95299997458999
Q 000873 262 LNFGARPFKYPINC 275 (1245)
Q Consensus 262 vNFG~~PFkYpp~G 275 (1245)
+|||+ +|+|||.|
T Consensus 159 vNFG~-~~~~pp~~ 171 (171)
T 2yyo_A 159 LHLNA-ELSGPSSG 171 (171)
T ss_dssp EETTC-CC------
T ss_pred EECCC-CCCCCCCC
T ss_conf 98999-87699888
No 4
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=1.00 E-value=1 Score=195.61 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=132.7
Q ss_pred CCEEEECCCCCCCCEEEECCCCEEEEE---CCEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCC---CCCC
Q ss_conf 852884877688983992899389950---65205982921215979999999841---91899984499999---9999
Q 000873 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPF---TDHK 176 (1245)
Q Consensus 106 p~~V~LD~~~~~~~l~IS~d~L~v~~~---~~~ssvRAt~~V~sGkwYFEV~I~s~---G~irIGvat~~~~l---~~~~ 176 (1245)
+..++||+.++++.+.+|+|++++... ..|.+|+++.++.+|+|||||+|... +.++|||++...++ ....
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~ 120 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAA 120 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCC
T ss_pred CCCEEECCCCCCCCEEECCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 44037474458998898999839997865788887985997158628999998014778830677774755545688534
Q ss_pred CCCCCCCCEEEECCCCCEECCCC----CCCC-----CCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf 97689984268279940004887----6779-----87789999999996899769999879042010003334689983
Q 000873 177 GVGDADDSYAFDGRRVKKWNKEA----EPYG-----QSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1245)
Q Consensus 177 giG~d~~Sygy~g~~g~~~h~~~----~~yG-----~~f~~GDVIGC~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~ 247 (1245)
.+|++..||+|+..++..||++. ..|+ +.|..+|+|||.||+++|+|+||+||+.+|.||+++. +.+
T Consensus 121 ~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~----~~~ 196 (217)
T 3emw_A 121 LLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK----GRT 196 (217)
T ss_dssp CTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCC
T ss_pred CCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCC----CCE
T ss_conf 2467997799990898098089066774366533566789999999999958999999999938078787799----998
Q ss_pred EEEEEEEC-CCCEEEEEC
Q ss_conf 89999937-997899952
Q 000873 248 YYPAVSLS-QGERCVLNF 264 (1245)
Q Consensus 248 lYPaVSl~-~g~~V~vNF 264 (1245)
+||+|++. .++.|+++|
T Consensus 197 LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 197 LYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp BEEEEEECSTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
T ss_conf 998999126983899996
No 5
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=1.00 E-value=1 Score=189.75 Aligned_cols=156 Identities=20% Similarity=0.317 Sum_probs=130.8
Q ss_pred CCEEEECCCCCCCCEEEECCC-CEEEEE---CCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCC---CC
Q ss_conf 852884877688983992899-389950---6520598292121597999999984---1918999844999999---99
Q 000873 106 PHIVGLEESSICGDVRIAKLP-LLVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DH 175 (1245)
Q Consensus 106 p~~V~LD~~~~~~~l~IS~d~-L~v~~~---~~~ssvRAt~~V~sGkwYFEV~I~s---~G~irIGvat~~~~l~---~~ 175 (1245)
+..++||+.++++++.+|+|+ +++... ..|.+|+++.++.+|+|||||+|.. .+.++||||+...+.. ..
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~ 109 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYT 109 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSC
T ss_pred CCCCCCCHHHCCCCEEEECCCEEEEEECCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 26561482216885698079838999798777625387587746974999999954267885799997577554546765
Q ss_pred CCCCCCCCCEEEECCCCCEECCCCC----C------CCCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCC
Q ss_conf 9976899842682799400048876----7------79877899999999968997699998790420100033346899
Q 000873 176 KGVGDADDSYAFDGRRVKKWNKEAE----P------YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPG 245 (1245)
Q Consensus 176 ~giG~d~~Sygy~g~~g~~~h~~~~----~------yG~~f~~GDVIGC~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~ 245 (1245)
..+|.+..||+|++.++++||++.. . +++.|..||+|||.||+++|+|+||+||+.++.+|+++. +
T Consensus 110 ~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~----~ 185 (212)
T 2jk9_A 110 TLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK----G 185 (212)
T ss_dssp CCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----T
T ss_pred CCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEECCCC----C
T ss_conf 665469976845999882888985467633675345677579999999999899999999999998478731699----9
Q ss_pred CCEEEEEEEC-CCCEEEEECC
Q ss_conf 8389999937-9978999529
Q 000873 246 FGYYPAVSLS-QGERCVLNFG 265 (1245)
Q Consensus 246 ~~lYPaVSl~-~g~~V~vNFG 265 (1245)
.++||++++. .+..|++||-
T Consensus 186 ~~l~P~f~l~~g~~~v~l~~~ 206 (212)
T 2jk9_A 186 KKLYPVVSAVWGHCEIRMRYL 206 (212)
T ss_dssp CCBEEEEEECCTTCEEEEEEE
T ss_pred CEEEEEEEEECCCCEEEEEEC
T ss_conf 879639998759958999977
No 6
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=1.00 E-value=1 Score=184.73 Aligned_cols=157 Identities=18% Similarity=0.289 Sum_probs=129.2
Q ss_pred CCEEEECCCCCCCCEEEECCCCEEEEE---CCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCC---CCC
Q ss_conf 852884877688983992899389950---6520598292121597999999984---1918999844999999---999
Q 000873 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DHK 176 (1245)
Q Consensus 106 p~~V~LD~~~~~~~l~IS~d~L~v~~~---~~~ssvRAt~~V~sGkwYFEV~I~s---~G~irIGvat~~~~l~---~~~ 176 (1245)
+..++||+.++++++.||+|++++... ..+.+|+++.++.+|+|||||+|.. .+.|.||||+...+.. ...
T Consensus 38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~ 117 (226)
T 2afj_A 38 QRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAA 117 (226)
T ss_dssp HHHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSC
T ss_pred CCCCEECCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 54657860207997799479879997777887575998987469779999999512788878998467756633366555
Q ss_pred CCCCCCCCEEEECCCCCEECCCCC----CC-----CCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf 976899842682799400048876----77-----987789999999996899769999879042010003334689983
Q 000873 177 GVGDADDSYAFDGRRVKKWNKEAE----PY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1245)
Q Consensus 177 giG~d~~Sygy~g~~g~~~h~~~~----~y-----G~~f~~GDVIGC~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~ 247 (1245)
.+|.+..||+|+..++.+||++.. .| ++.+..+|+|||.||+++|+|+||+||+.++.+|.++.. .+
T Consensus 118 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~~----~~ 193 (226)
T 2afj_A 118 LLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKG----RT 193 (226)
T ss_dssp CCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHHH----HC
T ss_pred CCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCCC----CE
T ss_conf 34678985789958980998966267610565456776899899999998889999999999585898876899----87
Q ss_pred EEEEEEEC-CCCEEEEECCC
Q ss_conf 89999937-99789995299
Q 000873 248 YYPAVSLS-QGERCVLNFGA 266 (1245)
Q Consensus 248 lYPaVSl~-~g~~V~vNFG~ 266 (1245)
+||++++. .+..+++||-.
T Consensus 194 L~P~f~l~~g~~~v~l~~~~ 213 (226)
T 2afj_A 194 LYPSVSAVWGQCQVRIRYMG 213 (226)
T ss_dssp CEEEEEECCTTSCCEEEEES
T ss_pred EEEEEECCCCCCEEEEEECC
T ss_conf 98999902699789999807
No 7
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=1.00 E-value=1 Score=117.33 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=109.6
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCC
Q ss_conf 52884877688983992899389950-------------65205982921215979999999841918999844999999
Q 000873 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1245)
Q Consensus 107 ~~V~LD~~~~~~~l~IS~d~L~v~~~-------------~~~ssvRAt~~V~sGkwYFEV~I~s~G~irIGvat~~~~l~ 173 (1245)
..++||+.++++.+.+|+|+.++... ..+.+|+++.++.+|++||||++...+.+.||+|..+.+..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~Rk 88 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQRK 88 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTTCSCEEEEEEETTCCCS
T ss_pred CCEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 55098975689975988999899989866788788320234033144674448876899996678369999942870878
Q ss_pred CCCCCCCCCCCEEEECCC--CCEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCE--EEECCCCCCCCCCCCCCEE
Q ss_conf 999976899842682799--400048876779877899999999968997699998790--4201000333468998389
Q 000873 174 DHKGVGDADDSYAFDGRR--VKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGV--SLGVAFSGIRKMGPGFGYY 249 (1245)
Q Consensus 174 ~~~giG~d~~Sygy~g~~--g~~~h~~~~~yG~~f~~GDVIGC~IDld~gtI~FtkNG~--~LGvAF~~i~~~~~~~~lY 249 (1245)
....+|.+..+|+..-.+ ...||+....... -.....||+.+|+++|+|+||-... .+--+|.... -.+++|
T Consensus 89 g~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~-~~~~~rVGVfLDye~G~lSFY~v~~~~~~I~tF~~~~---Fs~pL~ 164 (188)
T 2vok_A 89 GQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI-QVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECV---FAGPLR 164 (188)
T ss_dssp SCCCCSTTTTEEEEEEETTEEEECSSSCEEECC-SSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCC---CCSCEE
T ss_pred CCCCCCCCCCEEEEEEECCEEEEEECCCCCEEC-CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC---CCCCEE
T ss_conf 862348999899999989979999588617805-7898899999883899999997999973559842888---899888
Q ss_pred EEEEECC
Q ss_conf 9999379
Q 000873 250 PAVSLSQ 256 (1245)
Q Consensus 250 PaVSl~~ 256 (1245)
|++++..
T Consensus 165 P~F~~~~ 171 (188)
T 2vok_A 165 PFFNVGF 171 (188)
T ss_dssp EEEECCC
T ss_pred EEEEECC
T ss_conf 0899253
No 8
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=116.85 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=108.4
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCC
Q ss_conf 52884877688983992899389950-------------65205982921215979999999841918999844999999
Q 000873 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1245)
Q Consensus 107 ~~V~LD~~~~~~~l~IS~d~L~v~~~-------------~~~ssvRAt~~V~sGkwYFEV~I~s~G~irIGvat~~~~l~ 173 (1245)
..++||++++++++.+|+|+.++... ..+.+|+++.++.+|++||||++...+.+.||+|..+.+..
T Consensus 13 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~~~~w~vGV~~~s~~Rk 92 (191)
T 2wl1_A 13 VNVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDKTAWILGACKTSISRK 92 (191)
T ss_dssp CCCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTTCSCEEEEEEETTCCSS
T ss_pred EEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 01288876689855987998499988767789899554033345467422168778999995789989999954871888
Q ss_pred CCCCCCCCCCCEEEE---CCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCEEEECCCCCCCCCCCCCCE
Q ss_conf 999976899842682---799400048876779877899999999968997699998--790420100033346899838
Q 000873 174 DHKGVGDADDSYAFD---GRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1245)
Q Consensus 174 ~~~giG~d~~Sygy~---g~~g~~~h~~~~~yG~~f~~GDVIGC~IDld~gtI~Ftk--NG~~LGvAF~~i~~~~~~~~l 248 (1245)
....+|.+..+|+.. +.....+|+....... -.....||+.+|+++|+|+||- ++..+ -+|.... -.+++
T Consensus 93 g~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~~-~~~~~rVGVfLDye~G~lSFY~v~~~~~i-~tF~~~~---Fs~pl 167 (191)
T 2wl1_A 93 GNMTLSPENGYWVVIMMKENEYQASSVPPTRLLI-KEPPKRVGIFVDYRVGSISFYNVTARSHI-YTFASCS---FSGPL 167 (191)
T ss_dssp SCCCCCGGGTEEEEEEEETTEEEECCSSCEECCC-SSCCSEEEEEEETTTTEEEEEETTTTEEE-EEECCCC---CCSCE
T ss_pred CCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCC-CCCCCEEEEEEECCCCEEEEEECCCCCCE-EEECCCC---CCCCE
T ss_conf 9602589998999999699989988189726852-26876889998828999999979999414-8857988---89888
Q ss_pred EEEEEECC
Q ss_conf 99999379
Q 000873 249 YPAVSLSQ 256 (1245)
Q Consensus 249 YPaVSl~~ 256 (1245)
||++++..
T Consensus 168 ~P~F~~~~ 175 (191)
T 2wl1_A 168 QPIFSPGT 175 (191)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
T ss_conf 75798254
No 9
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=1.00 E-value=1 Score=114.79 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=107.0
Q ss_pred EEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCCC
Q ss_conf 2884877688983992899389950-------------652059829212159799999998419189998449999999
Q 000873 108 IVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTD 174 (1245)
Q Consensus 108 ~V~LD~~~~~~~l~IS~d~L~v~~~-------------~~~ssvRAt~~V~sGkwYFEV~I~s~G~irIGvat~~~~l~~ 174 (1245)
.++||++++++++.+|+|+.++... ..+.+|+++.++.+|++||||++...+.+.||+|..+.+...
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~Rkg 90 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQG 90 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTCSEEEEEEEETTSCCSS
T ss_pred EEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 67888646898458889972899888667888883412101422037632588668999967898899999548607788
Q ss_pred CCCCCCCCCCEEEECC---CCCEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC--CEEEECCCCCCCCCCCCCCEE
Q ss_conf 9997689984268279---94000488767798778999999999689976999987--904201000333468998389
Q 000873 175 HKGVGDADDSYAFDGR---RVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRN--GVSLGVAFSGIRKMGPGFGYY 249 (1245)
Q Consensus 175 ~~giG~d~~Sygy~g~---~g~~~h~~~~~yG~~f~~GDVIGC~IDld~gtI~FtkN--G~~LGvAF~~i~~~~~~~~lY 249 (1245)
...++.+..+|++.-. ....||+..... ..-.....||+.+|+++|+|+||-. +..+ -+|.... -.+++|
T Consensus 91 ~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i-~tF~~~~---Fs~pL~ 165 (201)
T 2fbe_A 91 KIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLHRVGIFLDVGMRSIAFYNVSDGCHI-YTFIEIP---VCEPWR 165 (201)
T ss_dssp CCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCCEEEEEEETTTTEEEEEETTTTEEE-EEECSCC---CSSCEE
T ss_pred CCCCCCCCCEEEEEEECCCEEEEECCCCCCC-CCCCCCCEEEEEEECCCCEEEEEECCCCCEE-EEECCCC---CCCCEE
T ss_conf 6146678989999996999899776874468-3477988999998908999999969999304-8976888---898888
Q ss_pred EEEEEC
Q ss_conf 999937
Q 000873 250 PAVSLS 255 (1245)
Q Consensus 250 PaVSl~ 255 (1245)
|++++.
T Consensus 166 P~F~~~ 171 (201)
T 2fbe_A 166 PFFAHK 171 (201)
T ss_dssp EEEEEE
T ss_pred EEEEEC
T ss_conf 199935
No 10
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=1.00 E-value=1 Score=111.01 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=104.4
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEECCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCCC-----CCCCCCC
Q ss_conf 52884877688983992899389950652059829212159799999998419189998449999999-----9997689
Q 000873 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTD-----HKGVGDA 181 (1245)
Q Consensus 107 ~~V~LD~~~~~~~l~IS~d~L~v~~~~~~ssvRAt~~V~sGkwYFEV~I~s~G~irIGvat~~~~l~~-----~~giG~d 181 (1245)
..|+||++++++ +.+|+|+.+|+. ....+|++..++++|++||||++...+.+.||+|....+... ...+|.+
T Consensus 12 v~vTLDp~TA~~-l~lSed~r~Vr~-~~~~~VLG~~~ftsGrHYWEVeV~~~~~W~vGV~~~~~~r~~~~~~~~~~~~~~ 89 (186)
T 3uv9_A 12 VDVTLATNNISH-AVIAEDKRQVSS-RAGTGVLGSQSITSGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPK 89 (186)
T ss_dssp CCCCCCCCSSCC-CEECTTSSCEEC-CCSSCEECSSCBCSSEEEEEEECTTCSCEEEEEESCSTTTTTTTHHHHTCCCGG
T ss_pred EEEEECCCCCCC-CEECCCCCEEEE-CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 972859887688-169789998763-399708588978898889999986897188889887764345466787315889
Q ss_pred CCCEEEEC---CCCCEECCCC--CCCCC------CCCCCCEEEEEEECCCCEEEEEE--CCEEEECCCCCCCCCCCCCCE
Q ss_conf 98426827---9940004887--67798------77899999999968997699998--790420100033346899838
Q 000873 182 DDSYAFDG---RRVKKWNKEA--EPYGQ------SWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1245)
Q Consensus 182 ~~Sygy~g---~~g~~~h~~~--~~yG~------~f~~GDVIGC~IDld~gtI~Ftk--NG~~LGvAF~~i~~~~~~~~l 248 (1245)
..+|+..- .....||+.. .+.++ .-.....||+.+|+++|+|+||- |...+--.|.... -.+++
T Consensus 90 ~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~~~---Fs~pL 166 (186)
T 3uv9_A 90 YGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCS---FSKPV 166 (186)
T ss_dssp GTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCC---CSSCB
T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC---CCCCE
T ss_conf 989999987898899996897412478835843355268889998454999899996788966899947968---89988
Q ss_pred EEEEEECC
Q ss_conf 99999379
Q 000873 249 YPAVSLSQ 256 (1245)
Q Consensus 249 YPaVSl~~ 256 (1245)
||++++..
T Consensus 167 ~P~F~~~~ 174 (186)
T 3uv9_A 167 FPYLNPRK 174 (186)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
T ss_conf 84798889
Done!