Query 000874
Match_columns 1243
No_of_seqs 1075 out of 6596
Neff 9.2
Searched_HMMs 46136
Date Tue Apr 2 00:36:34 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-147 4E-152 1449.2 94.1 1097 5-1238 9-1143(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.1E-60 1.3E-64 585.8 28.3 635 189-944 161-847 (889)
3 PLN03194 putative disease resi 100.0 1.5E-43 3.2E-48 345.9 16.5 158 2-177 20-179 (187)
4 PLN00113 leucine-rich repeat r 100.0 6.1E-39 1.3E-43 424.6 27.1 490 505-1007 43-582 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.9E-37 6.3E-42 408.6 25.2 445 545-992 108-589 (968)
6 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-35 2.9E-40 335.9 15.0 265 191-462 1-278 (287)
7 KOG0444 Cytoskeletal regulator 100.0 1.7E-31 3.7E-36 295.7 -4.8 370 557-953 9-389 (1255)
8 KOG4194 Membrane glycoprotein 100.0 1.7E-29 3.6E-34 279.4 6.6 379 533-934 54-447 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.9E-30 6.2E-35 286.1 -6.2 346 551-922 28-379 (1255)
10 KOG4194 Membrane glycoprotein 99.9 8.1E-29 1.8E-33 274.0 4.6 363 588-963 74-452 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 9.9E-30 2.1E-34 269.9 -9.5 414 551-987 41-541 (565)
12 KOG0472 Leucine-rich repeat pr 99.9 1.8E-28 4E-33 260.3 -9.4 406 593-1006 46-538 (565)
13 KOG0618 Serine/threonine phosp 99.9 4.8E-27 1E-31 274.4 -7.3 412 548-1007 38-487 (1081)
14 PLN03210 Resistant to P. syrin 99.9 5E-23 1.1E-27 272.1 24.1 339 632-1011 553-908 (1153)
15 KOG0618 Serine/threonine phosp 99.9 1.5E-25 3.3E-30 261.9 -5.8 405 534-960 48-510 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 7.5E-21 1.6E-25 189.0 2.8 133 11-144 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.6E-23 213.0 16.2 261 593-922 202-462 (788)
18 PRK15387 E3 ubiquitin-protein 99.8 3.6E-18 7.9E-23 208.8 16.7 243 698-974 227-469 (788)
19 smart00255 TIR Toll - interleu 99.7 1.7E-17 3.7E-22 165.6 12.4 136 8-147 1-138 (140)
20 KOG4237 Extracellular matrix p 99.7 7.8E-19 1.7E-23 187.7 -0.8 228 588-824 63-359 (498)
21 PRK15370 E3 ubiquitin-protein 99.7 4.1E-17 8.9E-22 201.3 12.6 246 592-918 178-428 (754)
22 PRK15370 E3 ubiquitin-protein 99.7 6.6E-17 1.4E-21 199.5 11.9 245 661-963 179-428 (754)
23 KOG4237 Extracellular matrix p 99.6 3E-17 6.5E-22 175.6 -3.5 376 597-989 51-479 (498)
24 KOG0617 Ras suppressor protein 99.5 2E-16 4.4E-21 150.0 -3.8 165 656-832 29-194 (264)
25 KOG0617 Ras suppressor protein 99.5 9.8E-16 2.1E-20 145.4 -2.4 159 605-797 24-183 (264)
26 cd00116 LRR_RI Leucine-rich re 99.5 8.5E-15 1.9E-19 168.9 1.9 116 709-824 74-206 (319)
27 cd00116 LRR_RI Leucine-rich re 99.4 6.4E-14 1.4E-18 161.6 2.9 197 698-895 3-234 (319)
28 PF13676 TIR_2: TIR domain; PD 99.3 9.9E-13 2.2E-17 122.9 4.6 91 11-111 1-91 (102)
29 PRK04841 transcriptional regul 99.2 5E-10 1.1E-14 148.4 23.3 297 180-501 8-335 (903)
30 KOG4658 Apoptotic ATPase [Sign 99.1 2.7E-11 5.9E-16 152.5 3.7 254 695-952 525-796 (889)
31 KOG0532 Leucine-rich repeat (L 99.0 4E-11 8.6E-16 135.0 -1.8 189 597-799 55-246 (722)
32 PRK00411 cdc6 cell division co 99.0 2.6E-08 5.5E-13 118.3 21.2 250 182-447 26-308 (394)
33 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.9E-15 127.2 0.5 107 714-821 119-232 (505)
34 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.8E-15 130.9 -0.5 190 720-916 79-271 (722)
35 PF05729 NACHT: NACHT domain 98.9 6.7E-09 1.5E-13 106.9 11.8 142 211-361 1-163 (166)
36 COG4886 Leucine-rich repeat (L 98.9 1.4E-09 3.1E-14 129.1 7.2 197 720-922 97-294 (394)
37 TIGR00635 ruvB Holliday juncti 98.9 7.9E-09 1.7E-13 117.9 12.9 271 186-480 4-289 (305)
38 PF01637 Arch_ATPase: Archaeal 98.9 1.4E-09 3.1E-14 119.1 6.5 197 188-391 1-233 (234)
39 TIGR03015 pepcterm_ATPase puta 98.9 5.1E-08 1.1E-12 109.2 18.1 181 209-396 42-242 (269)
40 KOG1259 Nischarin, modulator o 98.9 4.6E-10 9.9E-15 116.5 0.6 203 732-940 206-413 (490)
41 TIGR02928 orc1/cdc6 family rep 98.9 1.5E-07 3.2E-12 110.5 21.7 249 183-446 12-299 (365)
42 COG4886 Leucine-rich repeat (L 98.9 4.4E-09 9.6E-14 124.9 8.9 126 698-826 145-270 (394)
43 PRK00080 ruvB Holliday junctio 98.8 1.7E-08 3.6E-13 115.9 12.8 275 183-480 22-310 (328)
44 KOG3207 Beta-tubulin folding c 98.8 9.5E-10 2.1E-14 120.7 0.9 180 737-917 118-313 (505)
45 KOG1259 Nischarin, modulator o 98.8 8.4E-10 1.8E-14 114.6 -0.4 128 763-918 283-412 (490)
46 COG3899 Predicted ATPase [Gene 98.8 5.5E-08 1.2E-12 123.5 14.7 306 187-498 1-386 (849)
47 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 3.1E-13 102.8 5.6 130 775-934 8-148 (175)
48 COG2909 MalT ATP-dependent tra 98.7 5.1E-07 1.1E-11 108.1 18.3 294 181-502 14-342 (894)
49 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.3E-13 101.8 5.6 128 761-915 16-150 (175)
50 KOG1909 Ran GTPase-activating 98.7 3.2E-09 7E-14 113.7 -0.8 231 712-962 26-310 (382)
51 COG2256 MGS1 ATPase related to 98.6 2.3E-07 4.9E-12 102.1 12.8 170 186-386 24-206 (436)
52 KOG1909 Ran GTPase-activating 98.6 2.8E-09 6E-14 114.2 -1.9 184 714-917 90-310 (382)
53 PRK06893 DNA replication initi 98.6 3.6E-07 7.8E-12 98.8 12.9 149 209-390 38-201 (229)
54 PRK13342 recombination factor 98.5 2.7E-06 5.8E-11 100.7 18.1 178 183-392 9-196 (413)
55 PRK15386 type III secretion pr 98.5 3.1E-07 6.7E-12 104.0 9.4 116 807-940 48-170 (426)
56 PRK15386 type III secretion pr 98.5 3.4E-07 7.3E-12 103.7 8.0 137 783-937 48-188 (426)
57 PTZ00112 origin recognition co 98.4 6.5E-06 1.4E-10 99.4 16.8 204 182-396 751-986 (1164)
58 PLN03150 hypothetical protein; 98.3 9.9E-07 2.2E-11 109.7 7.9 105 718-822 420-526 (623)
59 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.9E-06 1.1E-10 90.4 12.4 173 185-393 14-202 (226)
60 PF13173 AAA_14: AAA domain 98.3 3.6E-06 7.7E-11 82.1 9.9 121 210-352 2-126 (128)
61 COG3903 Predicted ATPase [Gene 98.3 7.8E-07 1.7E-11 98.8 5.6 261 208-480 12-292 (414)
62 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.7E-12 112.6 -1.0 195 712-916 91-288 (414)
63 PLN03150 hypothetical protein; 98.3 1.3E-06 2.9E-11 108.5 7.7 104 742-845 420-526 (623)
64 KOG3678 SARM protein (with ste 98.2 4.6E-06 1E-10 91.7 10.4 93 6-105 610-710 (832)
65 KOG0531 Protein phosphatase 1, 98.2 1.8E-07 4E-12 111.2 -0.8 241 613-919 71-319 (414)
66 TIGR01242 26Sp45 26S proteasom 98.2 5E-06 1.1E-10 96.9 10.2 175 183-386 119-328 (364)
67 KOG2120 SCF ubiquitin ligase, 98.2 7.6E-08 1.6E-12 100.6 -4.5 83 694-776 186-272 (419)
68 KOG4341 F-box protein containi 98.2 6E-08 1.3E-12 106.3 -5.6 109 832-940 318-440 (483)
69 PRK12402 replication factor C 98.2 2E-05 4.4E-10 91.5 14.9 196 183-389 12-223 (337)
70 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.2E-11 72.2 3.6 58 859-916 1-60 (61)
71 PRK14949 DNA polymerase III su 98.1 2.6E-05 5.6E-10 96.2 15.0 188 183-391 13-220 (944)
72 cd00009 AAA The AAA+ (ATPases 98.1 1.2E-05 2.6E-10 80.6 10.5 123 189-330 1-131 (151)
73 PRK14963 DNA polymerase III su 98.1 6.2E-05 1.3E-09 90.2 17.7 186 183-389 11-214 (504)
74 PRK14961 DNA polymerase III su 98.1 3E-05 6.4E-10 90.1 14.6 180 183-388 13-216 (363)
75 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3E-12 98.7 -4.2 176 614-821 185-373 (419)
76 PRK07003 DNA polymerase III su 98.1 2.7E-05 5.8E-10 94.1 14.4 183 183-391 13-220 (830)
77 PTZ00202 tuzin; Provisional 98.1 1.6E-05 3.4E-10 89.4 11.6 167 181-360 257-433 (550)
78 PRK14960 DNA polymerase III su 98.1 3.5E-05 7.7E-10 92.2 15.0 180 183-388 12-215 (702)
79 PRK05564 DNA polymerase III su 98.1 3.2E-05 6.9E-10 88.2 14.0 178 186-392 4-190 (313)
80 PF13191 AAA_16: AAA ATPase do 98.1 4.4E-06 9.6E-11 87.6 6.4 51 187-237 1-51 (185)
81 PLN03025 replication factor C 98.1 1.9E-05 4.1E-10 90.3 11.7 183 182-387 9-195 (319)
82 PF13401 AAA_22: AAA domain; P 98.1 6.6E-06 1.4E-10 80.8 6.8 113 209-328 3-125 (131)
83 PRK08727 hypothetical protein; 98.1 4.9E-05 1.1E-09 82.5 14.1 166 185-386 18-198 (233)
84 TIGR02903 spore_lon_C ATP-depe 98.1 6E-05 1.3E-09 93.0 16.6 206 182-395 150-398 (615)
85 PRK13341 recombination factor 98.1 2.7E-05 5.9E-10 96.8 13.5 171 183-386 25-211 (725)
86 PRK07471 DNA polymerase III su 98.1 0.00023 4.9E-09 82.0 19.9 201 181-393 14-239 (365)
87 PRK12323 DNA polymerase III su 98.0 5.4E-05 1.2E-09 90.4 14.6 181 183-389 13-222 (700)
88 PRK14957 DNA polymerase III su 98.0 6.8E-05 1.5E-09 89.9 15.8 184 183-392 13-221 (546)
89 PRK04195 replication factor C 98.0 6.5E-05 1.4E-09 90.9 14.8 180 182-389 10-199 (482)
90 PRK14962 DNA polymerase III su 98.0 7.8E-05 1.7E-09 88.6 14.9 186 183-394 11-221 (472)
91 KOG2028 ATPase related to the 98.0 4.7E-05 1E-09 82.2 11.4 147 186-359 138-292 (554)
92 PRK00440 rfc replication facto 98.0 6.7E-05 1.5E-09 86.4 13.9 183 183-388 14-199 (319)
93 PRK08691 DNA polymerase III su 98.0 8.7E-05 1.9E-09 89.9 14.9 180 183-388 13-216 (709)
94 PRK14087 dnaA chromosomal repl 98.0 0.00018 3.9E-09 85.5 17.3 165 210-394 141-321 (450)
95 PRK09087 hypothetical protein; 98.0 4.4E-05 9.5E-10 82.0 11.0 137 210-390 44-193 (226)
96 PRK07940 DNA polymerase III su 98.0 8.3E-05 1.8E-09 86.2 14.0 179 186-392 5-213 (394)
97 PF13855 LRR_8: Leucine rich r 98.0 6.4E-06 1.4E-10 68.4 3.4 56 695-750 3-59 (61)
98 TIGR00678 holB DNA polymerase 98.0 9E-05 1.9E-09 77.8 13.0 160 197-387 3-186 (188)
99 KOG1859 Leucine-rich repeat pr 97.9 2E-07 4.4E-12 108.2 -7.6 127 694-824 165-292 (1096)
100 PRK08084 DNA replication initi 97.9 0.00012 2.5E-09 79.6 13.9 158 195-388 33-205 (235)
101 PRK06645 DNA polymerase III su 97.9 0.00013 2.9E-09 87.0 15.4 185 182-387 17-224 (507)
102 PF05496 RuvB_N: Holliday junc 97.9 0.00013 2.7E-09 75.8 13.0 177 182-390 20-219 (233)
103 KOG4341 F-box protein containi 97.9 4.7E-07 1E-11 99.5 -4.9 209 714-922 214-443 (483)
104 PRK14956 DNA polymerase III su 97.9 6.1E-05 1.3E-09 87.8 11.9 183 183-387 15-217 (484)
105 TIGR02397 dnaX_nterm DNA polym 97.9 0.00014 3E-09 85.2 14.7 185 182-392 10-218 (355)
106 KOG2982 Uncharacterized conser 97.9 4.2E-06 9E-11 87.9 1.5 188 715-922 70-266 (418)
107 PRK07994 DNA polymerase III su 97.9 0.00015 3.2E-09 88.5 14.9 180 183-388 13-216 (647)
108 PRK03992 proteasome-activating 97.9 6.8E-05 1.5E-09 87.8 11.6 174 183-385 128-336 (389)
109 COG1474 CDC6 Cdc6-related prot 97.9 0.00023 5E-09 81.7 15.5 200 183-392 14-238 (366)
110 PF00308 Bac_DnaA: Bacterial d 97.9 9.5E-05 2.1E-09 79.2 11.6 154 208-385 32-201 (219)
111 PRK09112 DNA polymerase III su 97.9 0.00014 3E-09 83.2 13.7 198 181-393 18-241 (351)
112 KOG1859 Leucine-rich repeat pr 97.9 4.5E-07 9.7E-12 105.4 -6.6 178 709-895 102-292 (1096)
113 PRK08903 DnaA regulatory inact 97.9 0.00012 2.6E-09 79.4 12.4 174 185-395 17-202 (227)
114 KOG2982 Uncharacterized conser 97.8 5E-06 1.1E-10 87.3 1.0 202 596-803 49-265 (418)
115 PRK14964 DNA polymerase III su 97.8 0.00022 4.8E-09 84.4 14.8 179 183-387 10-212 (491)
116 PRK14955 DNA polymerase III su 97.8 8.8E-05 1.9E-09 87.3 11.4 197 182-387 12-223 (397)
117 PRK05642 DNA replication initi 97.8 0.00025 5.4E-09 77.0 13.9 145 210-387 45-203 (234)
118 PRK14951 DNA polymerase III su 97.8 0.00036 7.9E-09 84.9 16.7 192 183-388 13-221 (618)
119 PRK14970 DNA polymerase III su 97.8 0.00022 4.8E-09 83.6 14.5 181 182-387 13-204 (367)
120 PRK09376 rho transcription ter 97.8 2.1E-05 4.5E-10 88.4 5.4 92 210-304 169-269 (416)
121 PRK14958 DNA polymerase III su 97.8 0.00028 6.2E-09 84.9 14.7 180 183-388 13-216 (509)
122 PRK14969 DNA polymerase III su 97.8 0.00031 6.7E-09 85.2 15.0 179 183-387 13-215 (527)
123 PHA02544 44 clamp loader, smal 97.7 0.00019 4.2E-09 82.3 12.3 151 182-359 17-171 (316)
124 PF14516 AAA_35: AAA-like doma 97.7 0.0028 6.1E-08 72.6 21.7 205 182-399 7-246 (331)
125 TIGR02639 ClpA ATP-dependent C 97.7 0.00021 4.5E-09 90.9 13.5 66 163-236 164-229 (731)
126 PRK05896 DNA polymerase III su 97.7 0.00015 3.3E-09 87.0 11.5 196 182-392 12-221 (605)
127 PF12799 LRR_4: Leucine Rich r 97.7 4.5E-05 9.7E-10 58.0 4.1 40 859-898 1-40 (44)
128 PRK06305 DNA polymerase III su 97.7 0.00053 1.2E-08 81.6 15.1 181 183-387 14-217 (451)
129 PRK14959 DNA polymerase III su 97.7 0.00047 1E-08 83.3 14.5 187 183-395 13-224 (624)
130 PRK00149 dnaA chromosomal repl 97.7 0.00075 1.6E-08 81.1 16.4 155 210-388 148-318 (450)
131 TIGR00362 DnaA chromosomal rep 97.7 0.00048 1E-08 81.7 14.4 155 210-388 136-306 (405)
132 PRK07764 DNA polymerase III su 97.7 0.00071 1.5E-08 85.5 16.4 179 183-387 12-216 (824)
133 PRK14954 DNA polymerase III su 97.7 0.00037 7.9E-09 85.3 13.4 196 183-387 13-223 (620)
134 PTZ00361 26 proteosome regulat 97.7 0.00022 4.8E-09 83.5 11.1 156 183-363 180-369 (438)
135 KOG2543 Origin recognition com 97.7 0.0012 2.7E-08 72.6 15.7 169 184-360 4-192 (438)
136 PRK07133 DNA polymerase III su 97.6 0.00047 1E-08 84.6 13.5 189 182-391 14-219 (725)
137 cd01128 rho_factor Transcripti 97.6 4.9E-05 1.1E-09 82.3 4.4 93 209-304 15-116 (249)
138 PRK09111 DNA polymerase III su 97.6 0.00071 1.5E-08 82.7 14.5 195 182-390 20-231 (598)
139 TIGR02881 spore_V_K stage V sp 97.6 0.00082 1.8E-08 74.5 13.8 130 208-362 40-192 (261)
140 TIGR03689 pup_AAA proteasome A 97.6 0.00052 1.1E-08 81.6 12.8 163 181-361 177-378 (512)
141 PRK14952 DNA polymerase III su 97.6 0.0012 2.6E-08 80.2 16.1 184 183-392 10-220 (584)
142 PRK14950 DNA polymerase III su 97.6 0.00064 1.4E-08 84.0 13.7 195 183-391 13-220 (585)
143 PRK14088 dnaA chromosomal repl 97.5 0.00052 1.1E-08 81.5 12.1 155 210-387 130-300 (440)
144 PTZ00454 26S protease regulato 97.5 0.001 2.2E-08 77.6 14.0 178 181-386 140-351 (398)
145 TIGR03345 VI_ClpV1 type VI sec 97.5 0.001 2.2E-08 85.2 15.2 164 163-360 169-362 (852)
146 KOG2227 Pre-initiation complex 97.5 0.00071 1.5E-08 76.4 11.9 332 183-526 147-518 (529)
147 PRK14953 DNA polymerase III su 97.5 0.0013 2.7E-08 78.9 15.0 182 183-390 13-218 (486)
148 PRK08451 DNA polymerase III su 97.5 0.0015 3.3E-08 78.1 15.2 182 183-389 11-215 (535)
149 CHL00095 clpC Clp protease ATP 97.5 0.00092 2E-08 86.2 14.2 66 163-236 161-226 (821)
150 PRK12422 chromosomal replicati 97.5 0.003 6.6E-08 74.9 17.1 130 211-362 142-285 (445)
151 KOG3665 ZYG-1-like serine/thre 97.5 4.4E-05 9.6E-10 94.6 1.7 151 764-915 122-285 (699)
152 TIGR00767 rho transcription te 97.4 0.00029 6.3E-09 79.9 7.2 93 209-304 167-268 (415)
153 PRK10865 protein disaggregatio 97.4 0.0018 3.9E-08 83.4 15.1 66 163-236 160-225 (857)
154 PRK06620 hypothetical protein; 97.4 0.0005 1.1E-08 73.2 8.5 129 211-385 45-182 (214)
155 PRK06647 DNA polymerase III su 97.4 0.0022 4.8E-08 78.1 15.0 187 182-389 12-217 (563)
156 TIGR02880 cbbX_cfxQ probable R 97.4 0.0024 5.3E-08 71.3 14.0 130 212-361 60-208 (284)
157 COG5238 RNA1 Ran GTPase-activa 97.3 7.9E-05 1.7E-09 77.5 1.8 59 859-917 185-254 (388)
158 KOG4579 Leucine-rich repeat (L 97.3 1.8E-05 3.9E-10 73.9 -2.7 106 788-917 28-135 (177)
159 PRK14948 DNA polymerase III su 97.3 0.003 6.6E-08 77.8 15.6 194 183-390 13-220 (620)
160 CHL00181 cbbX CbbX; Provisiona 97.3 0.0039 8.5E-08 69.6 15.2 130 211-362 60-210 (287)
161 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3.1E-08 82.2 12.7 65 163-235 168-232 (758)
162 KOG0989 Replication factor C, 97.3 0.0015 3.3E-08 70.0 10.6 193 182-394 32-233 (346)
163 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0024 5.1E-08 82.7 14.9 51 184-237 171-221 (852)
164 PRK14971 DNA polymerase III su 97.3 0.0022 4.9E-08 79.0 13.9 178 183-387 14-217 (614)
165 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0016 3.4E-08 77.8 11.8 177 185-386 227-429 (489)
166 PRK14086 dnaA chromosomal repl 97.3 0.0027 6E-08 76.5 13.7 151 211-385 315-481 (617)
167 PRK07952 DNA replication prote 97.3 0.0043 9.3E-08 67.1 13.9 35 210-244 99-133 (244)
168 PF12799 LRR_4: Leucine Rich r 97.3 0.00037 8E-09 53.0 4.1 40 882-922 1-40 (44)
169 KOG1644 U2-associated snRNP A' 97.2 0.00044 9.5E-09 69.4 5.6 104 715-820 41-149 (233)
170 PRK05707 DNA polymerase III su 97.2 0.0044 9.6E-08 70.4 14.3 160 208-392 20-203 (328)
171 PF00004 AAA: ATPase family as 97.2 0.0015 3.2E-08 64.0 9.2 23 213-235 1-23 (132)
172 PRK08116 hypothetical protein; 97.2 0.00083 1.8E-08 74.2 8.0 101 211-328 115-220 (268)
173 COG0593 DnaA ATPase involved i 97.2 0.0047 1E-07 70.8 13.7 134 209-363 112-259 (408)
174 CHL00176 ftsH cell division pr 97.2 0.0031 6.6E-08 77.9 13.0 175 184-385 181-387 (638)
175 PRK14965 DNA polymerase III su 97.1 0.0031 6.6E-08 77.6 12.8 186 183-392 13-221 (576)
176 PRK05563 DNA polymerase III su 97.1 0.0089 1.9E-07 73.3 16.6 191 182-387 12-215 (559)
177 PF08937 DUF1863: MTH538 TIR-l 97.1 0.00076 1.6E-08 65.8 6.0 88 9-102 1-105 (130)
178 COG1373 Predicted ATPase (AAA+ 97.1 0.0043 9.4E-08 72.7 13.0 121 212-357 39-163 (398)
179 PRK10536 hypothetical protein; 97.1 0.0021 4.6E-08 68.8 9.3 53 185-242 54-108 (262)
180 PRK12377 putative replication 97.1 0.0068 1.5E-07 65.7 13.0 36 210-245 101-136 (248)
181 KOG3665 ZYG-1-like serine/thre 97.0 0.00013 2.8E-09 90.5 -0.5 109 715-824 121-233 (699)
182 COG1222 RPT1 ATP-dependent 26S 97.0 0.015 3.2E-07 64.0 15.0 200 183-411 148-392 (406)
183 TIGR00602 rad24 checkpoint pro 97.0 0.0055 1.2E-07 75.1 12.9 55 181-235 79-135 (637)
184 KOG0991 Replication factor C, 97.0 0.0053 1.2E-07 62.8 10.6 50 183-235 24-73 (333)
185 COG5238 RNA1 Ran GTPase-activa 97.0 4.9E-05 1.1E-09 79.0 -3.8 41 858-898 271-319 (388)
186 PF05673 DUF815: Protein of un 97.0 0.018 4E-07 60.9 14.9 54 182-237 23-79 (249)
187 TIGR01241 FtsH_fam ATP-depende 97.0 0.0044 9.5E-08 75.5 11.9 176 183-385 52-259 (495)
188 PRK07399 DNA polymerase III su 97.0 0.017 3.7E-07 65.3 15.8 192 186-391 4-220 (314)
189 KOG4579 Leucine-rich repeat (L 97.0 8.2E-05 1.8E-09 69.6 -2.5 112 717-829 28-141 (177)
190 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0015 3.2E-08 71.1 6.4 93 210-305 69-177 (274)
191 smart00382 AAA ATPases associa 96.9 0.0014 3.1E-08 64.9 5.9 34 211-244 3-36 (148)
192 PRK09183 transposase/IS protei 96.9 0.0068 1.5E-07 66.7 11.6 35 210-244 102-136 (259)
193 PRK06526 transposase; Provisio 96.9 0.0036 7.8E-08 68.4 9.3 29 209-237 97-125 (254)
194 KOG1644 U2-associated snRNP A' 96.9 0.0016 3.5E-08 65.5 5.4 102 696-798 45-151 (233)
195 PRK08181 transposase; Validate 96.8 0.0036 7.7E-08 68.8 8.6 34 211-244 107-140 (269)
196 TIGR01243 CDC48 AAA family ATP 96.8 0.013 2.8E-07 75.1 14.9 176 184-386 176-381 (733)
197 PRK10865 protein disaggregatio 96.8 0.011 2.4E-07 76.2 13.8 52 185-236 567-624 (857)
198 PF05621 TniB: Bacterial TniB 96.7 0.018 3.8E-07 63.1 12.8 199 186-389 34-258 (302)
199 PLN00020 ribulose bisphosphate 96.7 0.041 8.8E-07 61.7 15.6 31 208-238 146-176 (413)
200 PF01695 IstB_IS21: IstB-like 96.7 0.0016 3.5E-08 67.2 4.5 35 210-244 47-81 (178)
201 PRK11331 5-methylcytosine-spec 96.7 0.0035 7.5E-08 72.6 7.6 55 186-245 175-231 (459)
202 PRK08058 DNA polymerase III su 96.7 0.018 3.9E-07 66.0 13.4 151 187-360 6-181 (329)
203 TIGR02639 ClpA ATP-dependent C 96.7 0.013 2.8E-07 74.8 13.4 50 186-235 454-509 (731)
204 PRK00771 signal recognition pa 96.7 0.014 3E-07 68.7 12.4 29 209-237 94-122 (437)
205 COG2255 RuvB Holliday junction 96.6 0.016 3.4E-07 61.8 11.1 260 182-480 22-311 (332)
206 PRK06871 DNA polymerase III su 96.6 0.042 9.2E-07 62.0 15.5 174 195-389 11-200 (325)
207 PRK07261 topology modulation p 96.6 0.0058 1.2E-07 62.8 8.0 23 212-234 2-24 (171)
208 TIGR01243 CDC48 AAA family ATP 96.6 0.034 7.3E-07 71.3 16.4 174 185-386 452-657 (733)
209 PRK08118 topology modulation p 96.6 0.0056 1.2E-07 62.6 7.5 32 212-243 3-37 (167)
210 TIGR03346 chaperone_ClpB ATP-d 96.6 0.017 3.7E-07 74.8 13.6 52 186-237 565-622 (852)
211 TIGR00763 lon ATP-dependent pr 96.6 0.05 1.1E-06 69.9 17.6 53 186-238 320-375 (775)
212 KOG0735 AAA+-type ATPase [Post 96.6 0.02 4.3E-07 68.1 12.4 161 210-392 431-616 (952)
213 PRK08769 DNA polymerase III su 96.5 0.068 1.5E-06 60.3 16.1 95 290-393 112-209 (319)
214 KOG1947 Leucine rich repeat pr 96.5 0.00055 1.2E-08 83.9 -0.5 184 739-940 242-441 (482)
215 PRK06921 hypothetical protein; 96.5 0.0035 7.6E-08 69.1 5.6 37 209-245 116-153 (266)
216 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.6E-08 68.4 2.7 85 856-940 62-157 (260)
217 COG3267 ExeA Type II secretory 96.5 0.056 1.2E-06 57.1 13.7 179 208-394 49-247 (269)
218 TIGR02640 gas_vesic_GvpN gas v 96.5 0.02 4.4E-07 63.3 11.5 24 212-235 23-46 (262)
219 COG0466 Lon ATP-dependent Lon 96.4 0.031 6.8E-07 67.0 13.1 162 186-361 323-508 (782)
220 KOG0741 AAA+-type ATPase [Post 96.4 0.019 4.2E-07 65.8 10.8 150 208-382 536-704 (744)
221 TIGR03345 VI_ClpV1 type VI sec 96.4 0.012 2.7E-07 75.5 10.6 51 186-236 566-622 (852)
222 PF04665 Pox_A32: Poxvirus A32 96.4 0.0024 5.2E-08 68.1 3.5 34 212-245 15-48 (241)
223 cd01131 PilT Pilus retraction 96.4 0.0076 1.6E-07 63.6 7.1 110 211-331 2-111 (198)
224 PRK10867 signal recognition pa 96.3 0.026 5.7E-07 66.2 11.9 30 208-237 98-127 (433)
225 COG1484 DnaC DNA replication p 96.3 0.0082 1.8E-07 65.7 7.3 36 209-244 104-139 (254)
226 PRK10787 DNA-binding ATP-depen 96.3 0.079 1.7E-06 67.5 16.9 53 186-238 322-377 (784)
227 TIGR00959 ffh signal recogniti 96.3 0.029 6.4E-07 65.8 12.0 27 209-235 98-124 (428)
228 PRK06090 DNA polymerase III su 96.3 0.14 2.9E-06 57.8 16.8 109 290-412 107-218 (319)
229 COG0542 clpA ATP-binding subun 96.3 0.021 4.6E-07 70.4 11.1 118 186-314 491-618 (786)
230 PRK07993 DNA polymerase III su 96.3 0.05 1.1E-06 62.1 13.6 164 194-390 10-202 (334)
231 PF13207 AAA_17: AAA domain; P 96.3 0.0036 7.7E-08 60.3 3.6 23 212-234 1-23 (121)
232 PRK06835 DNA replication prote 96.2 0.0069 1.5E-07 68.7 6.3 35 211-245 184-218 (329)
233 PF02562 PhoH: PhoH-like prote 96.2 0.014 3.1E-07 60.9 8.0 127 191-329 5-156 (205)
234 PF07728 AAA_5: AAA domain (dy 96.2 0.0078 1.7E-07 59.6 5.9 22 213-234 2-23 (139)
235 PRK14974 cell division protein 96.2 0.089 1.9E-06 59.8 14.9 29 209-237 139-167 (336)
236 KOG0733 Nuclear AAA ATPase (VC 96.2 0.023 5.1E-07 66.3 9.9 55 184-238 188-251 (802)
237 COG1618 Predicted nucleotide k 96.2 0.0054 1.2E-07 59.6 4.1 35 210-244 5-40 (179)
238 KOG0744 AAA+-type ATPase [Post 96.2 0.013 2.9E-07 63.1 7.4 37 209-245 176-216 (423)
239 TIGR01425 SRP54_euk signal rec 96.2 0.14 3E-06 59.8 16.4 29 209-237 99-127 (429)
240 PRK12608 transcription termina 96.1 0.015 3.2E-07 65.9 8.1 102 198-304 123-233 (380)
241 TIGR02902 spore_lonB ATP-depen 96.1 0.029 6.3E-07 68.5 11.2 49 183-234 62-110 (531)
242 PRK06696 uridine kinase; Valid 96.1 0.009 2E-07 64.5 6.1 47 191-237 3-49 (223)
243 KOG0730 AAA+-type ATPase [Post 96.1 0.13 2.7E-06 61.5 15.6 152 186-365 434-619 (693)
244 CHL00095 clpC Clp protease ATP 96.0 0.021 4.5E-07 73.9 10.0 51 186-236 509-565 (821)
245 PRK11889 flhF flagellar biosyn 96.0 0.1 2.2E-06 59.5 14.0 37 208-244 239-275 (436)
246 KOG2739 Leucine-rich acidic nu 96.0 0.0029 6.3E-08 66.7 1.4 86 714-801 41-130 (260)
247 KOG2228 Origin recognition com 95.9 0.042 9.1E-07 60.0 9.9 173 184-359 22-217 (408)
248 PRK11034 clpA ATP-dependent Cl 95.9 0.029 6.2E-07 70.8 10.2 50 186-235 458-513 (758)
249 smart00763 AAA_PrkA PrkA AAA d 95.9 0.0067 1.4E-07 68.4 4.1 49 187-235 52-103 (361)
250 PF13177 DNA_pol3_delta2: DNA 95.8 0.015 3.3E-07 59.0 5.8 138 190-348 1-161 (162)
251 PRK08939 primosomal protein Dn 95.8 0.026 5.7E-07 63.5 8.1 99 209-327 155-259 (306)
252 PRK06964 DNA polymerase III su 95.7 0.26 5.7E-06 56.2 15.8 92 290-392 131-225 (342)
253 TIGR00064 ftsY signal recognit 95.7 0.063 1.4E-06 59.5 10.4 37 208-244 70-106 (272)
254 PRK10733 hflB ATP-dependent me 95.7 0.069 1.5E-06 66.9 12.0 129 211-363 186-337 (644)
255 cd01120 RecA-like_NTPases RecA 95.7 0.017 3.8E-07 58.7 5.7 34 212-245 1-34 (165)
256 PRK07667 uridine kinase; Provi 95.6 0.022 4.7E-07 59.9 6.3 42 195-237 3-44 (193)
257 PRK04132 replication factor C 95.6 0.092 2E-06 66.4 12.6 150 218-388 574-727 (846)
258 KOG1947 Leucine rich repeat pr 95.5 0.0011 2.5E-08 81.1 -4.2 35 715-749 187-223 (482)
259 COG0542 clpA ATP-binding subun 95.5 0.085 1.8E-06 65.3 11.8 50 184-236 168-217 (786)
260 KOG2123 Uncharacterized conser 95.5 0.001 2.2E-08 69.8 -3.9 67 855-922 37-105 (388)
261 COG2812 DnaX DNA polymerase II 95.4 0.077 1.7E-06 63.1 10.6 187 183-384 13-212 (515)
262 COG1223 Predicted ATPase (AAA+ 95.4 0.072 1.6E-06 55.8 8.9 174 185-385 120-318 (368)
263 PF10443 RNA12: RNA12 protein; 95.3 1.4 3E-05 50.9 19.6 102 292-397 149-283 (431)
264 PRK05541 adenylylsulfate kinas 95.3 0.02 4.3E-07 59.3 4.8 38 208-245 5-42 (176)
265 PF13604 AAA_30: AAA domain; P 95.3 0.077 1.7E-06 55.8 9.2 117 194-331 6-133 (196)
266 PRK04296 thymidine kinase; Pro 95.3 0.029 6.2E-07 58.8 5.9 111 211-331 3-118 (190)
267 PF08357 SEFIR: SEFIR domain; 95.2 0.022 4.8E-07 57.2 4.7 65 10-75 2-70 (150)
268 KOG0729 26S proteasome regulat 95.2 0.14 3.1E-06 53.6 10.3 57 187-248 178-244 (435)
269 PRK14722 flhF flagellar biosyn 95.2 0.13 2.8E-06 59.1 11.1 36 209-244 136-173 (374)
270 KOG2004 Mitochondrial ATP-depe 95.2 0.059 1.3E-06 64.4 8.3 53 186-238 411-466 (906)
271 PF13238 AAA_18: AAA domain; P 95.1 0.017 3.6E-07 56.2 3.4 22 213-234 1-22 (129)
272 COG0470 HolB ATPase involved i 95.1 0.14 2.9E-06 59.1 11.4 144 187-352 2-172 (325)
273 PF01583 APS_kinase: Adenylyls 95.1 0.032 6.9E-07 55.5 5.2 36 210-245 2-37 (156)
274 KOG1514 Origin recognition com 95.1 0.42 9.1E-06 57.6 15.0 167 184-361 394-589 (767)
275 PF00448 SRP54: SRP54-type pro 95.1 0.082 1.8E-06 55.5 8.5 36 210-245 1-36 (196)
276 PRK08699 DNA polymerase III su 95.1 0.11 2.5E-06 59.0 10.3 86 291-388 114-202 (325)
277 PRK09361 radB DNA repair and r 95.1 0.072 1.6E-06 57.6 8.4 49 196-245 10-58 (225)
278 PF00485 PRK: Phosphoribulokin 95.1 0.019 4.2E-07 60.4 3.8 26 212-237 1-26 (194)
279 TIGR01420 pilT_fam pilus retra 95.1 0.042 9E-07 63.4 6.8 107 210-327 122-228 (343)
280 cd01121 Sms Sms (bacterial rad 95.0 0.091 2E-06 60.8 9.5 50 195-245 68-117 (372)
281 cd01858 NGP_1 NGP-1. Autoanti 95.0 0.14 3E-06 51.8 9.9 23 210-232 102-124 (157)
282 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.14 3E-06 51.3 9.4 117 211-330 3-139 (159)
283 KOG0738 AAA+-type ATPase [Post 95.0 0.095 2.1E-06 58.3 8.8 75 158-237 189-272 (491)
284 PRK05703 flhF flagellar biosyn 95.0 0.23 5E-06 58.7 12.9 36 210-245 221-258 (424)
285 PRK12724 flagellar biosynthesi 95.0 0.76 1.7E-05 53.3 16.5 25 210-234 223-247 (432)
286 COG0572 Udk Uridine kinase [Nu 95.0 0.027 5.8E-07 58.7 4.3 30 208-237 6-35 (218)
287 PRK15429 formate hydrogenlyase 94.9 0.18 4E-06 64.2 12.7 49 185-234 375-423 (686)
288 cd01394 radB RadB. The archaea 94.9 0.1 2.2E-06 56.2 8.9 50 195-245 5-54 (218)
289 KOG0652 26S proteasome regulat 94.9 0.53 1.1E-05 49.4 13.3 54 184-237 169-232 (424)
290 PRK10416 signal recognition pa 94.9 0.11 2.3E-06 59.0 9.3 29 209-237 113-141 (318)
291 COG1875 NYN ribonuclease and A 94.9 0.17 3.6E-06 56.1 10.2 25 208-232 243-267 (436)
292 TIGR01817 nifA Nif-specific re 94.8 0.26 5.6E-06 60.9 13.4 49 184-233 194-242 (534)
293 TIGR02237 recomb_radB DNA repa 94.7 0.086 1.9E-06 56.3 7.8 38 208-245 10-47 (209)
294 PRK12727 flagellar biosynthesi 94.7 0.28 6.2E-06 58.3 12.4 29 209-237 349-377 (559)
295 PF07726 AAA_3: ATPase family 94.7 0.02 4.4E-07 54.2 2.4 28 213-240 2-29 (131)
296 PRK11608 pspF phage shock prot 94.7 0.38 8.3E-06 55.1 13.4 46 186-232 6-51 (326)
297 PTZ00301 uridine kinase; Provi 94.7 0.028 6E-07 59.5 3.7 29 210-238 3-31 (210)
298 PF13306 LRR_5: Leucine rich r 94.7 0.076 1.7E-06 51.6 6.7 59 760-820 31-90 (129)
299 KOG2123 Uncharacterized conser 94.7 0.0036 7.8E-08 65.8 -2.9 98 554-666 18-123 (388)
300 PF03215 Rad17: Rad17 cell cyc 94.7 0.15 3.3E-06 61.5 10.3 59 185-245 18-78 (519)
301 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.1 2.3E-06 51.8 7.6 35 209-244 25-59 (144)
302 KOG0731 AAA+-type ATPase conta 94.6 0.36 7.8E-06 59.6 13.2 179 183-388 308-520 (774)
303 COG4608 AppF ABC-type oligopep 94.5 0.079 1.7E-06 56.9 6.7 124 209-335 38-176 (268)
304 COG0464 SpoVK ATPases of the A 94.5 0.095 2.1E-06 64.1 8.4 132 208-363 274-425 (494)
305 PRK06067 flagellar accessory p 94.5 0.11 2.3E-06 56.7 7.9 49 196-245 12-60 (234)
306 KOG0733 Nuclear AAA ATPase (VC 94.5 0.19 4.1E-06 59.1 9.9 129 210-362 545-693 (802)
307 PRK15455 PrkA family serine pr 94.4 0.042 9.1E-07 65.3 4.8 52 185-236 75-129 (644)
308 PRK05480 uridine/cytidine kina 94.4 0.034 7.4E-07 59.4 3.9 27 208-234 4-30 (209)
309 cd03223 ABCD_peroxisomal_ALDP 94.4 0.081 1.7E-06 54.1 6.4 123 209-345 26-160 (166)
310 COG2607 Predicted ATPase (AAA+ 94.4 0.27 5.9E-06 51.4 9.9 58 183-240 57-115 (287)
311 COG2884 FtsE Predicted ATPase 94.4 0.12 2.5E-06 52.1 7.0 54 282-337 146-205 (223)
312 PRK04040 adenylate kinase; Pro 94.4 0.039 8.5E-07 57.5 4.0 26 210-235 2-27 (188)
313 PF14532 Sigma54_activ_2: Sigm 94.4 0.015 3.3E-07 57.4 0.9 45 189-234 1-45 (138)
314 PRK03839 putative kinase; Prov 94.4 0.031 6.6E-07 58.2 3.2 24 212-235 2-25 (180)
315 cd02019 NK Nucleoside/nucleoti 94.4 0.032 6.8E-07 47.5 2.7 23 212-234 1-23 (69)
316 PRK08233 hypothetical protein; 94.4 0.031 6.7E-07 58.2 3.3 26 210-235 3-28 (182)
317 cd01129 PulE-GspE PulE/GspE Th 94.4 0.11 2.3E-06 57.5 7.5 101 194-310 68-168 (264)
318 KOG1969 DNA replication checkp 94.3 0.13 2.8E-06 61.8 8.5 77 208-304 324-400 (877)
319 cd03222 ABC_RNaseL_inhibitor T 94.3 0.15 3.2E-06 52.6 7.8 35 209-244 24-58 (177)
320 TIGR02974 phageshock_pspF psp 94.3 0.31 6.6E-06 55.8 11.2 45 188-233 1-45 (329)
321 PRK05022 anaerobic nitric oxid 94.2 0.61 1.3E-05 57.1 14.6 50 184-234 185-234 (509)
322 PRK06762 hypothetical protein; 94.2 0.038 8.2E-07 56.6 3.5 25 210-234 2-26 (166)
323 PRK00625 shikimate kinase; Pro 94.2 0.034 7.4E-07 57.0 3.1 24 212-235 2-25 (173)
324 TIGR00235 udk uridine kinase. 94.2 0.042 9E-07 58.6 3.8 28 208-235 4-31 (207)
325 cd01393 recA_like RecA is a b 94.2 0.17 3.6E-06 54.8 8.6 48 197-245 7-60 (226)
326 PRK12723 flagellar biosynthesi 94.1 0.22 4.9E-06 57.7 9.9 27 209-235 173-199 (388)
327 cd00983 recA RecA is a bacter 94.1 0.097 2.1E-06 58.9 6.6 51 195-245 40-90 (325)
328 KOG0728 26S proteasome regulat 94.1 1.2 2.7E-05 46.5 13.8 47 187-233 147-204 (404)
329 cd03214 ABC_Iron-Siderophores_ 94.1 0.13 2.9E-06 53.3 7.3 121 209-333 24-162 (180)
330 PF08433 KTI12: Chromatin asso 94.0 0.14 3E-06 56.5 7.6 27 211-237 2-28 (270)
331 PRK12726 flagellar biosynthesi 94.0 0.83 1.8E-05 52.2 13.5 38 208-245 204-241 (407)
332 PRK06547 hypothetical protein; 93.9 0.071 1.5E-06 54.6 4.7 27 208-234 13-39 (172)
333 KOG0651 26S proteasome regulat 93.9 0.22 4.7E-06 53.9 8.3 30 209-238 165-194 (388)
334 PRK13531 regulatory ATPase Rav 93.9 0.1 2.3E-06 61.3 6.6 46 186-236 20-65 (498)
335 KOG0743 AAA+-type ATPase [Post 93.9 0.55 1.2E-05 54.0 12.0 152 211-399 236-417 (457)
336 PF13671 AAA_33: AAA domain; P 93.9 0.049 1.1E-06 54.1 3.5 24 212-235 1-24 (143)
337 PF00910 RNA_helicase: RNA hel 93.9 0.037 8E-07 51.8 2.4 26 213-238 1-26 (107)
338 PTZ00088 adenylate kinase 1; P 93.9 0.081 1.8E-06 56.9 5.3 22 213-234 9-30 (229)
339 cd01135 V_A-ATPase_B V/A-type 93.9 0.12 2.6E-06 56.4 6.6 92 210-305 69-180 (276)
340 cd03238 ABC_UvrA The excision 93.8 0.12 2.5E-06 53.2 6.1 24 209-232 20-43 (176)
341 TIGR00416 sms DNA repair prote 93.8 0.24 5.2E-06 59.2 9.5 52 193-245 78-129 (454)
342 TIGR01360 aden_kin_iso1 adenyl 93.8 0.052 1.1E-06 56.8 3.5 26 209-234 2-27 (188)
343 PRK12597 F0F1 ATP synthase sub 93.7 0.11 2.5E-06 61.1 6.6 90 210-303 143-249 (461)
344 PHA00729 NTP-binding motif con 93.7 0.083 1.8E-06 55.9 4.8 28 208-235 15-42 (226)
345 PRK06995 flhF flagellar biosyn 93.7 0.61 1.3E-05 55.5 12.4 28 209-236 255-282 (484)
346 PRK00131 aroK shikimate kinase 93.7 0.052 1.1E-06 56.0 3.3 26 210-235 4-29 (175)
347 cd03115 SRP The signal recogni 93.7 0.34 7.5E-06 49.9 9.4 26 212-237 2-27 (173)
348 PRK06217 hypothetical protein; 93.7 0.22 4.8E-06 51.8 8.0 24 212-235 3-26 (183)
349 PRK09280 F0F1 ATP synthase sub 93.6 0.18 3.8E-06 59.3 7.8 91 210-303 144-250 (463)
350 TIGR03499 FlhF flagellar biosy 93.6 0.18 3.9E-06 56.4 7.7 29 209-237 193-221 (282)
351 KOG2035 Replication factor C, 93.6 1.2 2.6E-05 47.6 13.0 212 185-413 12-260 (351)
352 cd00544 CobU Adenosylcobinamid 93.6 0.36 7.8E-06 49.2 9.2 79 213-300 2-82 (169)
353 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.22 4.8E-06 53.5 7.9 51 282-334 148-204 (254)
354 PRK14723 flhF flagellar biosyn 93.6 0.6 1.3E-05 58.3 12.7 26 210-235 185-210 (767)
355 COG1428 Deoxynucleoside kinase 93.6 0.055 1.2E-06 55.7 3.1 26 210-235 4-29 (216)
356 PRK09354 recA recombinase A; P 93.6 0.15 3.3E-06 57.7 7.0 51 195-245 45-95 (349)
357 KOG1051 Chaperone HSP104 and r 93.5 0.73 1.6E-05 58.2 13.3 107 186-305 562-674 (898)
358 PRK13947 shikimate kinase; Pro 93.5 0.054 1.2E-06 55.8 3.0 26 212-237 3-28 (171)
359 TIGR02012 tigrfam_recA protein 93.5 0.18 3.8E-06 56.8 7.2 50 196-245 41-90 (321)
360 PF13306 LRR_5: Leucine rich r 93.5 0.3 6.4E-06 47.3 8.1 12 855-866 77-88 (129)
361 cd02028 UMPK_like Uridine mono 93.5 0.081 1.8E-06 54.8 4.3 26 212-237 1-26 (179)
362 PRK08356 hypothetical protein; 93.4 0.14 3.1E-06 53.8 6.2 22 210-231 5-26 (195)
363 PRK11823 DNA repair protein Ra 93.4 0.31 6.7E-06 58.2 9.6 50 195-245 66-115 (446)
364 PRK12678 transcription termina 93.3 0.098 2.1E-06 61.9 5.0 93 210-305 416-517 (672)
365 PRK00889 adenylylsulfate kinas 93.3 0.11 2.3E-06 53.8 4.9 28 209-236 3-30 (175)
366 PRK05439 pantothenate kinase; 93.3 0.11 2.5E-06 58.0 5.4 39 198-236 74-112 (311)
367 PRK09270 nucleoside triphospha 93.3 0.1 2.2E-06 56.5 5.0 30 208-237 31-60 (229)
368 PF03205 MobB: Molybdopterin g 93.3 0.12 2.6E-06 50.9 5.0 32 211-242 1-32 (140)
369 PRK10923 glnG nitrogen regulat 93.3 0.63 1.4E-05 56.7 12.3 48 185-233 137-184 (469)
370 PF00006 ATP-synt_ab: ATP synt 93.2 0.091 2E-06 55.7 4.3 85 211-303 16-117 (215)
371 KOG0726 26S proteasome regulat 93.2 0.25 5.3E-06 52.8 7.2 56 183-238 182-247 (440)
372 KOG0734 AAA+-type ATPase conta 93.2 0.6 1.3E-05 54.2 10.8 150 185-361 303-484 (752)
373 PRK03846 adenylylsulfate kinas 93.2 0.12 2.5E-06 54.7 5.0 37 208-244 22-58 (198)
374 PF00437 T2SE: Type II/IV secr 93.2 0.074 1.6E-06 59.4 3.7 123 187-327 105-230 (270)
375 PRK05973 replicative DNA helic 93.1 0.18 4E-06 54.1 6.4 38 208-245 62-99 (237)
376 PF00560 LRR_1: Leucine Rich R 93.1 0.038 8.2E-07 34.9 0.7 18 884-901 2-19 (22)
377 TIGR00554 panK_bact pantothena 93.1 0.25 5.5E-06 54.9 7.7 28 208-235 60-87 (290)
378 TIGR01039 atpD ATP synthase, F 93.1 0.35 7.6E-06 56.7 9.0 92 210-304 143-250 (461)
379 KOG1532 GTPase XAB1, interacts 93.1 0.08 1.7E-06 55.9 3.4 33 208-240 17-49 (366)
380 PF10236 DAP3: Mitochondrial r 93.1 2.4 5.2E-05 48.0 15.7 48 342-389 258-306 (309)
381 COG3640 CooC CO dehydrogenase 93.0 0.14 3E-06 53.5 5.0 35 212-246 2-36 (255)
382 cd00227 CPT Chloramphenicol (C 93.0 0.076 1.6E-06 54.9 3.3 25 211-235 3-27 (175)
383 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.35 7.5E-06 52.7 8.6 49 196-245 8-56 (237)
384 cd02024 NRK1 Nicotinamide ribo 92.9 0.066 1.4E-06 55.4 2.7 23 212-234 1-23 (187)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 92.9 0.65 1.4E-05 45.9 9.7 51 55-107 3-53 (141)
386 COG0055 AtpD F0F1-type ATP syn 92.9 0.2 4.3E-06 55.5 6.3 102 210-315 147-269 (468)
387 PRK10820 DNA-binding transcrip 92.9 0.91 2E-05 55.6 12.9 50 183-233 201-250 (520)
388 cd03240 ABC_Rad50 The catalyti 92.9 0.27 5.8E-06 52.2 7.3 20 212-231 24-43 (204)
389 TIGR01359 UMP_CMP_kin_fam UMP- 92.9 0.066 1.4E-06 55.8 2.7 23 212-234 1-23 (183)
390 cd02025 PanK Pantothenate kina 92.9 0.069 1.5E-06 57.3 2.8 24 212-235 1-24 (220)
391 COG1102 Cmk Cytidylate kinase 92.8 0.082 1.8E-06 51.7 2.9 24 212-235 2-25 (179)
392 cd03216 ABC_Carb_Monos_I This 92.8 0.14 2.9E-06 52.3 4.7 117 209-333 25-146 (163)
393 PF00406 ADK: Adenylate kinase 92.8 0.064 1.4E-06 53.9 2.2 20 215-234 1-20 (151)
394 cd02023 UMPK Uridine monophosp 92.7 0.07 1.5E-06 56.4 2.6 23 212-234 1-23 (198)
395 cd03228 ABCC_MRP_Like The MRP 92.7 0.39 8.4E-06 49.4 8.0 35 209-244 27-61 (171)
396 PRK10463 hydrogenase nickel in 92.7 0.18 3.9E-06 55.5 5.7 44 196-242 93-136 (290)
397 COG1066 Sms Predicted ATP-depe 92.7 0.42 9E-06 54.2 8.5 98 194-301 78-178 (456)
398 COG0003 ArsA Predicted ATPase 92.7 0.14 3E-06 57.7 4.9 35 210-244 2-36 (322)
399 PRK13949 shikimate kinase; Pro 92.7 0.086 1.9E-06 54.0 3.0 24 212-235 3-26 (169)
400 KOG1970 Checkpoint RAD17-RFC c 92.7 0.18 3.8E-06 58.9 5.7 42 192-234 88-134 (634)
401 COG0488 Uup ATPase components 92.6 0.16 3.4E-06 61.4 5.6 128 211-347 349-511 (530)
402 PRK10751 molybdopterin-guanine 92.6 0.12 2.5E-06 52.6 3.8 30 208-237 4-33 (173)
403 PRK13948 shikimate kinase; Pro 92.5 0.095 2.1E-06 54.1 3.1 28 208-235 8-35 (182)
404 TIGR02858 spore_III_AA stage I 92.5 0.25 5.4E-06 54.5 6.6 118 208-332 109-232 (270)
405 cd01122 GP4d_helicase GP4d_hel 92.5 0.53 1.1E-05 52.6 9.3 53 208-267 28-81 (271)
406 TIGR00390 hslU ATP-dependent p 92.5 0.18 4E-06 58.0 5.5 52 187-238 13-75 (441)
407 PF03308 ArgK: ArgK protein; 92.4 0.31 6.8E-06 52.2 6.8 41 196-237 16-56 (266)
408 TIGR00150 HI0065_YjeE ATPase, 92.4 0.15 3.3E-06 49.2 4.2 26 209-234 21-46 (133)
409 cd00071 GMPK Guanosine monopho 92.4 0.081 1.8E-06 52.0 2.3 27 212-238 1-27 (137)
410 cd02020 CMPK Cytidine monophos 92.4 0.091 2E-06 52.4 2.8 23 212-234 1-23 (147)
411 PHA02244 ATPase-like protein 92.3 0.43 9.2E-06 54.3 8.1 47 186-237 96-146 (383)
412 PRK06002 fliI flagellum-specif 92.3 0.14 3.1E-06 59.8 4.6 88 209-304 164-267 (450)
413 PRK13946 shikimate kinase; Pro 92.3 0.095 2.1E-06 54.6 2.9 26 210-235 10-35 (184)
414 PRK11388 DNA-binding transcrip 92.3 1.5 3.2E-05 55.6 14.1 48 185-233 324-371 (638)
415 cd01130 VirB11-like_ATPase Typ 92.3 0.24 5.1E-06 51.8 5.8 92 210-310 25-119 (186)
416 COG2401 ABC-type ATPase fused 92.2 0.13 2.9E-06 57.6 4.0 152 187-338 372-577 (593)
417 PF03266 NTPase_1: NTPase; In 92.2 0.16 3.4E-06 51.8 4.3 24 213-236 2-25 (168)
418 TIGR02322 phosphon_PhnN phosph 92.2 0.1 2.2E-06 54.1 3.1 25 211-235 2-26 (179)
419 cd00464 SK Shikimate kinase (S 92.2 0.11 2.3E-06 52.4 3.1 22 213-234 2-23 (154)
420 PRK08972 fliI flagellum-specif 92.2 0.16 3.4E-06 59.2 4.7 88 209-304 161-265 (444)
421 TIGR00708 cobA cob(I)alamin ad 92.2 0.65 1.4E-05 47.1 8.5 119 210-330 5-141 (173)
422 KOG3928 Mitochondrial ribosome 92.2 1.6 3.4E-05 49.5 12.1 28 209-236 178-206 (461)
423 cd02021 GntK Gluconate kinase 92.1 0.097 2.1E-06 52.5 2.6 22 212-233 1-22 (150)
424 cd01132 F1_ATPase_alpha F1 ATP 92.1 0.19 4.1E-06 54.9 4.9 93 210-309 69-180 (274)
425 PRK14493 putative bifunctional 92.1 0.17 3.8E-06 55.8 4.7 35 211-246 2-36 (274)
426 COG0703 AroK Shikimate kinase 92.1 0.12 2.5E-06 52.0 3.0 28 211-238 3-30 (172)
427 cd03283 ABC_MutS-like MutS-lik 92.0 0.45 9.7E-06 50.2 7.6 23 211-233 26-48 (199)
428 TIGR02788 VirB11 P-type DNA tr 92.0 0.23 5.1E-06 56.3 5.8 95 209-310 143-237 (308)
429 TIGR02655 circ_KaiC circadian 92.0 0.23 5E-06 60.2 6.1 52 193-245 247-298 (484)
430 COG0465 HflB ATP-dependent Zn 92.0 0.57 1.2E-05 56.7 9.1 153 184-363 148-335 (596)
431 PF06068 TIP49: TIP49 C-termin 91.9 0.22 4.7E-06 56.0 5.2 60 184-244 22-84 (398)
432 PLN02796 D-glycerate 3-kinase 91.9 0.72 1.6E-05 52.1 9.3 30 208-237 98-127 (347)
433 PRK05201 hslU ATP-dependent pr 91.9 0.24 5.3E-06 57.1 5.6 51 187-237 16-77 (443)
434 PRK08149 ATP synthase SpaL; Va 91.9 0.2 4.3E-06 58.5 5.1 88 209-304 150-254 (428)
435 PRK13768 GTPase; Provisional 91.9 0.2 4.4E-06 55.0 4.9 35 210-244 2-36 (253)
436 PRK13975 thymidylate kinase; P 91.8 0.14 3E-06 54.1 3.5 26 211-236 3-28 (196)
437 PLN03046 D-glycerate 3-kinase; 91.8 0.67 1.4E-05 53.4 9.0 29 208-236 210-238 (460)
438 COG1936 Predicted nucleotide k 91.8 0.11 2.5E-06 51.5 2.6 20 212-231 2-21 (180)
439 PF00154 RecA: recA bacterial 91.8 0.84 1.8E-05 51.3 9.7 53 193-245 36-88 (322)
440 PF12775 AAA_7: P-loop contain 91.8 0.14 3.1E-06 56.6 3.7 24 211-234 34-57 (272)
441 PRK05057 aroK shikimate kinase 91.8 0.13 2.8E-06 52.9 3.1 26 210-235 4-29 (172)
442 TIGR00176 mobB molybdopterin-g 91.8 0.18 3.8E-06 50.7 4.0 26 212-237 1-26 (155)
443 PF00625 Guanylate_kin: Guanyl 91.8 0.13 2.8E-06 53.6 3.1 35 210-244 2-36 (183)
444 PF00560 LRR_1: Leucine Rich R 91.7 0.067 1.4E-06 33.8 0.6 21 860-880 1-21 (22)
445 PRK14530 adenylate kinase; Pro 91.7 0.13 2.8E-06 55.2 3.1 23 212-234 5-27 (215)
446 PRK12339 2-phosphoglycerate ki 91.7 0.15 3.2E-06 53.5 3.5 25 210-234 3-27 (197)
447 cd00267 ABC_ATPase ABC (ATP-bi 91.7 0.18 3.8E-06 51.1 4.0 122 210-345 25-153 (157)
448 TIGR03878 thermo_KaiC_2 KaiC d 91.7 0.25 5.4E-06 54.5 5.4 38 208-245 34-71 (259)
449 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.23 5E-06 57.2 5.2 95 210-310 134-231 (358)
450 TIGR02782 TrbB_P P-type conjug 91.6 0.39 8.4E-06 54.1 6.9 88 211-309 133-222 (299)
451 KOG0727 26S proteasome regulat 91.5 0.23 5E-06 51.7 4.5 53 186-238 155-217 (408)
452 PRK15453 phosphoribulokinase; 91.5 0.25 5.4E-06 53.9 5.0 29 208-236 3-31 (290)
453 COG3854 SpoIIIAA ncharacterize 91.5 0.42 9.2E-06 49.5 6.2 111 209-327 136-251 (308)
454 COG0468 RecA RecA/RadA recombi 91.5 0.59 1.3E-05 51.4 7.9 47 198-245 49-95 (279)
455 PRK14529 adenylate kinase; Pro 91.4 0.53 1.2E-05 50.2 7.3 23 213-235 3-25 (223)
456 COG0563 Adk Adenylate kinase a 91.4 0.15 3.1E-06 52.6 3.0 22 212-233 2-23 (178)
457 COG2019 AdkA Archaeal adenylat 91.4 0.18 4E-06 49.5 3.4 25 210-234 4-28 (189)
458 COG0529 CysC Adenylylsulfate k 91.4 0.29 6.2E-06 48.8 4.7 37 208-244 21-57 (197)
459 TIGR03574 selen_PSTK L-seryl-t 91.3 0.18 4E-06 55.4 4.0 26 212-237 1-26 (249)
460 PRK14526 adenylate kinase; Pro 91.3 0.27 6E-06 52.2 5.1 22 213-234 3-24 (211)
461 CHL00059 atpA ATP synthase CF1 91.3 0.42 9E-06 56.4 6.9 88 210-304 141-246 (485)
462 TIGR03600 phage_DnaB phage rep 91.3 2.8 6E-05 50.1 14.2 72 187-267 173-245 (421)
463 TIGR01287 nifH nitrogenase iro 91.3 0.2 4.4E-06 56.1 4.3 27 211-237 1-27 (275)
464 COG1224 TIP49 DNA helicase TIP 91.3 0.37 8E-06 53.2 5.9 58 183-241 36-96 (450)
465 cd02034 CooC The accessory pro 91.3 0.28 6E-06 46.5 4.5 32 213-244 2-33 (116)
466 CHL00060 atpB ATP synthase CF1 91.2 0.3 6.6E-06 57.6 5.7 53 210-266 161-214 (494)
467 PF03029 ATP_bind_1: Conserved 91.2 0.19 4.1E-06 54.5 3.8 29 215-243 1-29 (238)
468 COG0194 Gmk Guanylate kinase [ 91.2 0.2 4.2E-06 50.7 3.5 25 210-234 4-28 (191)
469 TIGR03324 alt_F1F0_F1_al alter 91.2 0.43 9.2E-06 56.6 6.9 88 210-304 162-267 (497)
470 TIGR03263 guanyl_kin guanylate 91.2 0.13 2.9E-06 53.3 2.6 24 211-234 2-25 (180)
471 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.8E-06 30.2 1.3 12 884-895 3-14 (17)
472 cd04121 Rab40 Rab40 subfamily. 91.1 0.077 1.7E-06 55.5 0.6 23 210-232 6-28 (189)
473 COG0396 sufC Cysteine desulfur 91.1 0.77 1.7E-05 48.0 7.7 57 282-338 153-213 (251)
474 cd01983 Fer4_NifH The Fer4_Nif 91.0 0.25 5.4E-06 44.9 3.9 25 212-236 1-25 (99)
475 PTZ00494 tuzin-like protein; P 91.0 3.5 7.6E-05 47.4 13.2 166 182-360 367-543 (664)
476 PLN02200 adenylate kinase fami 91.0 0.19 4.2E-06 54.4 3.6 27 208-234 41-67 (234)
477 COG1763 MobB Molybdopterin-gua 91.0 0.28 6E-06 49.2 4.4 36 210-245 2-37 (161)
478 COG1124 DppF ABC-type dipeptid 91.0 0.16 3.6E-06 53.4 2.9 24 209-232 32-55 (252)
479 cd01136 ATPase_flagellum-secre 91.0 0.33 7.2E-06 54.8 5.5 88 209-304 68-172 (326)
480 PRK14738 gmk guanylate kinase; 91.0 0.2 4.3E-06 53.3 3.6 26 208-233 11-36 (206)
481 COG0378 HypB Ni2+-binding GTPa 91.0 0.3 6.4E-06 49.7 4.5 37 210-246 13-49 (202)
482 PRK03731 aroL shikimate kinase 90.9 0.17 3.7E-06 52.0 3.0 24 212-235 4-27 (171)
483 cd02027 APSK Adenosine 5'-phos 90.9 0.24 5.3E-06 49.5 4.0 24 212-235 1-24 (149)
484 COG0467 RAD55 RecA-superfamily 90.9 0.58 1.2E-05 51.9 7.4 38 208-245 21-58 (260)
485 KOG0066 eIF2-interacting prote 90.9 2.8 6.1E-05 47.4 12.3 24 210-233 613-636 (807)
486 PRK04182 cytidylate kinase; Pr 90.9 0.17 3.8E-06 52.4 3.1 24 212-235 2-25 (180)
487 PLN02318 phosphoribulokinase/u 90.9 0.23 5.1E-06 59.5 4.4 27 208-234 63-89 (656)
488 PF02374 ArsA_ATPase: Anion-tr 90.9 0.24 5.3E-06 55.9 4.4 34 211-244 2-35 (305)
489 cd03281 ABC_MSH5_euk MutS5 hom 90.9 0.54 1.2E-05 50.2 6.8 23 210-232 29-51 (213)
490 cd03116 MobB Molybdenum is an 90.9 0.31 6.7E-06 49.1 4.7 28 211-238 2-29 (159)
491 TIGR01069 mutS2 MutS2 family p 90.9 0.37 8E-06 61.4 6.4 114 290-413 401-522 (771)
492 TIGR01313 therm_gnt_kin carboh 90.8 0.15 3.2E-06 52.0 2.4 22 213-234 1-22 (163)
493 PRK09435 membrane ATPase/prote 90.8 0.5 1.1E-05 53.6 6.8 30 208-237 54-83 (332)
494 PRK15115 response regulator Gl 90.8 9.1 0.0002 46.2 18.3 47 186-233 134-180 (444)
495 cd01125 repA Hexameric Replica 90.8 0.82 1.8E-05 49.9 8.3 24 212-235 3-26 (239)
496 PRK08927 fliI flagellum-specif 90.8 0.41 8.9E-06 56.1 6.2 87 209-303 157-260 (442)
497 KOG0780 Signal recognition par 90.7 4 8.7E-05 45.9 13.1 30 208-237 99-128 (483)
498 PRK07132 DNA polymerase III su 90.7 3.1 6.8E-05 46.7 12.9 168 195-392 5-185 (299)
499 TIGR03305 alt_F1F0_F1_bet alte 90.7 0.31 6.8E-06 57.2 5.2 91 210-304 138-245 (449)
500 COG4088 Predicted nucleotide k 90.7 0.19 4.2E-06 51.1 2.9 31 211-241 2-32 (261)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-147 Score=1449.20 Aligned_cols=1097 Identities=33% Similarity=0.552 Sum_probs=890.4
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhcCCceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCcccchhhHHH
Q 000874 5 SSCNYDVFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWCLNE 84 (1243)
Q Consensus 5 ~~~~~dvF~sf~g~d~r~~f~~~L~~~L~~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~s~wcl~e 84 (1243)
+.|+||||+||||+|||++|++|||+|| .++||++|+|++ +++|+.|+++|++||++|+|+|||||++||+|+|||||
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l-~~~~i~~f~d~~-~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~e 86 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKEL-DRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNE 86 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHH-HHCCCeEEccCC-ccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHH
Confidence 5799999999999999999999999999 999999999885 99999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCEEEeEEEEeCcchhccccCchhhHHHHHHHhhccChHHHHHHHHHHHHhhhhcCCCccc-CcchHHH
Q 000874 85 LVKILECKNTNGQIVIPVFYNVSPSDVRHQTGIFGDGFDKLEQQFKEKPEIVQKWRYALRETSHLAGHESTK-FRHDAQL 163 (1243)
Q Consensus 85 l~~i~~~~~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~-~~~e~~~ 163 (1243)
|++||+|+++++++|+||||+|||+|||+|+|.||+||++++++ ...+++++||+||++||+++|| +.. .++|+++
T Consensus 87 l~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~-~~~~~~~E~~~ 163 (1153)
T PLN03210 87 LLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY-HSQNWPNEAKM 163 (1153)
T ss_pred HHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce-ecCCCCCHHHH
Confidence 99999999999999999999999999999999999999999876 4678999999999999999999 554 5899999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEE
Q 000874 164 VNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 243 (1243)
Q Consensus 164 i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 243 (1243)
|++||++|+++++. +++.+.+++|||+.+++++..+|..+. +++++||||||||+||||||+++|+++..+|++.+|
T Consensus 164 i~~Iv~~v~~~l~~--~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf 240 (1153)
T PLN03210 164 IEEIANDVLGKLNL--TPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF 240 (1153)
T ss_pred HHHHHHHHHHhhcc--ccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999998 788888999999999999999998776 789999999999999999999999999999999999
Q ss_pred Eeec--cccc---cC----CC-ChHHHHHHHHHhhhcc-cccccCCCccHHHHHhhcCceEEEEEecCCChhhhHHHhcC
Q 000874 244 MSDV--RRNS---ET----GG-GLEHLQKQMLSTILSE-KLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGG 312 (1243)
Q Consensus 244 ~~~~--~~~~---~~----~~-~l~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~ 312 (1243)
+... +... .. .. ....++++++.++... .... .....++++|++||+||||||||+..+|+.+.+.
T Consensus 241 v~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~ 317 (1153)
T PLN03210 241 IDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQ 317 (1153)
T ss_pred eeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhh
Confidence 8642 1111 00 01 1235666777664332 2211 1125688999999999999999999999999998
Q ss_pred CCCCCCCCeEEEEecccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 313 LDQYGPGSRIVVTTRDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 313 ~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
..|+++||+||||||+++++..++++ .+|+|+.|++++||+||+++||++..+++++.+++++|+++|+|+||||+++
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 89999999999999999999888877 8999999999999999999999988888889999999999999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHhhccCcchhhhHhHHhhccccCch-hhhhhhheeccccCCCCHHHHHHHHhh---cccchh
Q 000874 393 GSSLCLKRKSHWENVLDDLNRICESEIHDIYDILKISFNELIP-REKSMFLDIACFFEGEDKDILMRILDD---SESYAL 468 (1243)
Q Consensus 393 g~~L~~~~~~~w~~~l~~l~~~~~~~i~~v~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~~l~~---~~~~~~ 468 (1243)
|++|++++..+|+.++++++..++.++ .++|++||++|++ .+|.||++|||||++.+++.+..++++ .++.++
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I---~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKI---EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHH---HHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 999999999999999999988766656 9999999999976 589999999999999999999988876 456789
Q ss_pred hhcccccceEEcCCeEecchhHHHHHHHHhhccccCCCCCcccccChHHHHHHhhccCcccccceeeecCCCcccccccc
Q 000874 469 GVLIDKSLITISHNCLQMHDLLQEMGRQIVRQESQKEPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFMDLSKIEGINLDS 548 (1243)
Q Consensus 469 ~~L~~~sLi~~~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~vl~~~~~~~~i~~i~l~ls~~~~~~l~~ 548 (1243)
+.|+++|||++..+++.|||++|+||++++++++ .+|++|+|+|+++|+++++..++|++.+++|++|++....+.+..
T Consensus 473 ~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 473 KNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 9999999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCCcccccceeccccccccc
Q 000874 549 RAFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQ 628 (1243)
Q Consensus 549 ~~f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~ 628 (1243)
++|.+|++|++|+++.+.+.. .......+|+++..+|.+||+|+|.+|+++.+|..+.+.+|++|+|++|.++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~------~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQ------KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEK 625 (1153)
T ss_pred HHHhcCccccEEEEecccccc------cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccc
Confidence 999999999999998764211 11244678999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCccccc
Q 000874 629 IWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEV 708 (1243)
Q Consensus 629 l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~l 708 (1243)
+|.++..+++|+.|+|++|.....+|+++.+++|+.|+|++|..+. .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~--------------------------------~l 673 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV--------------------------------EL 673 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc--------------------------------cc
Confidence 9999999999999999999988999999999999999999997766 56
Q ss_pred ccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccC
Q 000874 709 PSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLG 788 (1243)
Q Consensus 709 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 788 (1243)
|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. ..+|+.|++++|.+..+|..+ .+++
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~ 748 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLEN 748 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccc
Confidence 6677788888999999998888888866 6899999999999888887764 457899999999999999866 5788
Q ss_pred CcEEeecCCCCCCc-------CCCccCCCCCCcEEEccCC-CCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCC
Q 000874 789 LEFLTVSGCSKLDK-------LPDNIGNLKSLDFIAAVGS-AISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSS 860 (1243)
Q Consensus 789 L~~L~L~~~~~~~~-------lp~~l~~l~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 860 (1243)
|+.|.+.+|..... .+......++|+.|++++| .+..+|.++.++++|+.|++++|..+..+|.. .++++
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~s 826 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLES 826 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccc
Confidence 88888887543211 1112233578999999998 46678999999999999999999999999873 27899
Q ss_pred CcEEEeccCCCC-CcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCCCc---CCCCcEEecccC
Q 000874 861 LKFLYISDCAVT-EIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLPEL---PLCLKYLDLRDC 936 (1243)
Q Consensus 861 L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~l~~c 936 (1243)
|+.|+|++|... .+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.+..+|.. .++|+.|++++|
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 999999998544 45543 47899999999999999999999999999999999999998854 356888899999
Q ss_pred CCCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCCccccccccCcccEEEecCccccchHHhhh
Q 000874 937 NTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRSIKWRYKTSTIYFEFTNCLELNGKANNK 1016 (1243)
Q Consensus 937 ~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~~~~~~~~~~~l~~l~~~nC~~l~~~~~~~ 1016 (1243)
..+..++..- .|.. ...++.|..+ .+ ++...+.|.||++|++.+.
T Consensus 904 ~~L~~~~l~~-------------------~~~~--------~~~~~~n~~~-~~-----p~~~~l~f~nC~~L~~~a~-- 948 (1153)
T PLN03210 904 GALTEASWNG-------------------SPSE--------VAMATDNIHS-KL-----PSTVCINFINCFNLDQEAL-- 948 (1153)
T ss_pred cccccccCCC-------------------Cchh--------hhhhcccccc-cC-----CchhccccccccCCCchhh--
Confidence 8876554210 0000 0011111111 11 1223478899999997652
Q ss_pred HHHhHHHHHHHHHhhhccccccccccccccCCCCcEEEcCCCCCCCCccccCCCceEE-EECCCCCCCCCcceeEEEEEe
Q 000874 1017 ILADSRLRIQHLAIASLRLGYEKTNEEKLSEVDGPIIVLPGSEIPDWFSNQSSGSSIC-IQLPPHSFCRNLIGFALCAVL 1095 (1243)
Q Consensus 1017 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~~g~si~-~~lp~~~~~~~~~gf~~c~v~ 1095 (1243)
+ +... ....+++||.++|+||.||+.|++++ |.+|+.|++..|.||++|+|+
T Consensus 949 l-----------~~~~----------------~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~ 1001 (1153)
T PLN03210 949 L-----------QQQS----------------IFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVV 1001 (1153)
T ss_pred h-----------cccc----------------cceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEE
Confidence 1 1111 02358899999999999999999999 999999998899999999999
Q ss_pred ecCCCccCC-CCceEEEEEecCC-cccccccccccceeeccccCCCCCCCeEEEEeeec--CCC---CCCCCccceEEEE
Q 000874 1096 DFKQLHCDC-LSDFYVSCQLDLE-IKTLSKTKHVDLGFYLPYFKYSIDSDHVILGFKPC--SNV---GFPDGYHHTTASF 1168 (1243)
Q Consensus 1096 ~~~~~~~~~-~~~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~--~~~---~~~~~~~~~~~~f 1168 (1243)
++....... ...+.|.|++.+. ++.++...+. ..+ .....++|++++.... ... .....|+|+.+.|
T Consensus 1002 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f 1075 (1153)
T PLN03210 1002 DSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQP-HVF-----SVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQF 1075 (1153)
T ss_pred ecCccccCCCceeEEEEEEEECCCCCccccCCCc-eeE-----eeeccccceEEecccccccccccchhccCCceeeEEE
Confidence 887643221 1233478887554 3332111100 000 0011245665553211 000 0112466666666
Q ss_pred EEEEeccccceeEEeeeeEEEecCCCCCCCCcccccccccchhcccCCCCCCCCCc--cccCCCchhhhccc
Q 000874 1169 KFFAECHQKRHRIKRYGVCPVYANPSETKANTFTLNFATEVWKLDDLASASGTSDE--EELEPSPKRIFRAD 1238 (1243)
Q Consensus 1169 ~f~~~~~~~~~~vk~cGv~lvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~~~~~~ 1238 (1243)
+|... ...++||+|||+++|..+...++. +-...+.-.....+..++.++++ -|.+.++||+.++.
T Consensus 1076 ~~~~~--~~~~~~~~cg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1143 (1153)
T PLN03210 1076 RLTNK--NSQLKLKGCGIRLSEDDSSLNNTL--PNVEEADDDNPVNGSEHWEDCEDSALERESERTKDREMR 1143 (1153)
T ss_pred EEecC--CCCeEEEeeeEEEeccCCCcccCC--CccccccccccccccccccccCCcchhccccccchhhhh
Confidence 66432 233699999999999765443332 10000000000111223344443 36778888877653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-60 Score=585.80 Aligned_cols=635 Identities=27% Similarity=0.349 Sum_probs=450.8
Q ss_pred ccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH---HhcccCceEEEeeccccccCCCChHHHHHHHH
Q 000874 189 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ---FSSEFEGRCFMSDVRRNSETGGGLEHLQKQML 265 (1243)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 265 (1243)
||.+..++++.+.|..+. ..+|||+||||+||||||+.++|+ ++.+|+.++|+.+ |+. +....++++++
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk~-f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SKE-FTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----ccc-ccHHhHHHHHH
Confidence 999999999999998854 499999999999999999999993 7799999999964 444 88999999999
Q ss_pred HhhhcccccccC---CCccHHHHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhcc-cCCCcce
Q 000874 266 STILSEKLEVAG---PNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEK-FGVEEEK 341 (1243)
Q Consensus 266 ~~l~~~~~~~~~---~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~ 341 (1243)
..++..+..... ......+.+.|++||+||||||||+..+|+.+..++|....||+|++|||++.|+.. ++++ .
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~ 310 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--Y 310 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--c
Confidence 987765544433 245577899999999999999999999999999999988899999999999999998 8876 8
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCC-CHHHHHHHHHHHhhccCcc-
Q 000874 342 IYGVNGLEFDEAFELFCNFAFEEN-HCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLK-RKSHWENVLDDLNRICESE- 418 (1243)
Q Consensus 342 ~~~v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~~~~- 418 (1243)
.++++.|+.+|||+||++.||... ...+.+.++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+.+....+
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 999999999999999999999763 3335589999999999999999999999999988 7789999999887762222
Q ss_pred ---hhhhHhHHhhccccCchhhhhhhheeccccCCCCHH--HHHHHHhh---------------cccchhhhcccccceE
Q 000874 419 ---IHDIYDILKISFNELIPREKSMFLDIACFFEGEDKD--ILMRILDD---------------SESYALGVLIDKSLIT 478 (1243)
Q Consensus 419 ---i~~v~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~--~~~~~l~~---------------~~~~~~~~L~~~sLi~ 478 (1243)
.+.+..+|++|||.|+++.|.||+|||.||++++++ .+...|.+ .+..++..|++++|+.
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 356799999999999988999999999999999765 57777755 3455688999999998
Q ss_pred EcC-----CeEecchhHHHHHHHHhhccccCCCCCcccccChHHHHHHhhccCcccccceeeecCCCcccccccchhhcC
Q 000874 479 ISH-----NCLQMHDLLQEMGRQIVRQESQKEPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFMDLSKIEGINLDSRAFTN 553 (1243)
Q Consensus 479 ~~~-----~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~vl~~~~~~~~i~~i~l~ls~~~~~~l~~~~f~~ 553 (1243)
... .++.|||++||||.+++++.+..... .++.+-.
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-------------------------~iv~~~~-------------- 511 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEEN-------------------------QIVSDGV-------------- 511 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccc-------------------------eEEECCc--------------
Confidence 875 68999999999999999854421100 0000000
Q ss_pred CCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCCcccccceecccccccccccccc
Q 000874 554 MSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQIWEGK 633 (1243)
Q Consensus 554 l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~ 633 (1243)
.+ ...|+... +...|...+.+|.+..++.....+
T Consensus 512 --~~-----------------------~~~~~~~~--~~~~rr~s~~~~~~~~~~~~~~~~------------------- 545 (889)
T KOG4658|consen 512 --GL-----------------------SEIPQVKS--WNSVRRMSLMNNKIEHIAGSSENP------------------- 545 (889)
T ss_pred --Cc-----------------------cccccccc--hhheeEEEEeccchhhccCCCCCC-------------------
Confidence 00 00111111 135566666666666665554333
Q ss_pred cccccccccccCCCcc-cccCCC--CCCCCCccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCccccccc
Q 000874 634 KKAFKLKSIDLSHSEH-LIRIPD--LSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPS 710 (1243)
Q Consensus 634 ~~l~~L~~L~L~~~~~-~~~~~~--l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~ 710 (1243)
+|++|-+..|.. ...++. |..+|.|+.|||++|..+..+|.++++|.+|++ |+|+++.|..+|.
T Consensus 546 ----~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry---------L~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 546 ----KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY---------LDLSDTGISHLPS 612 (889)
T ss_pred ----ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc---------ccccCCCccccch
Confidence 355555555542 333333 778899999999999999999999999998876 8889999999999
Q ss_pred ccccCCcceEEecccCcccccccccccccCccceeeccccc--CcCcCchhhhcCCcccEeeccccCccccCcccccccC
Q 000874 711 SIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCL--NLERFPEILEEMEHLKRIYLERTAITELPSSFENLLG 788 (1243)
Q Consensus 711 ~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~--~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 788 (1243)
.+++|.+|.+||+..+..+..+|.....|++|++|.+..-. .....-..+..+.+|+.+....... .+-..+..++.
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~ 691 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTR 691 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHH
Confidence 99999999999999988888887777779999999987643 1122233445555566555544333 11111222222
Q ss_pred Cc----EEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCcc------ccC-CCCCcEEEeccCCCCCCCChhhccC
Q 000874 789 LE----FLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSS------VAD-SNVLRMLFFCRCRRLLSLPRLLLSG 857 (1243)
Q Consensus 789 L~----~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~------~~~-l~~L~~L~l~~~~~l~~l~~~~~~~ 857 (1243)
|. .+.+.+| .....+..+..+.+|+.|.+.++.+.+.... ... ++++..+.+.+|..+..+.. ...
T Consensus 692 L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~--~~f 768 (889)
T KOG4658|consen 692 LRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW--LLF 768 (889)
T ss_pred HHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch--hhc
Confidence 22 3333222 2334455677778888888887776543221 011 33455555555555444433 234
Q ss_pred CCCCcEEEeccCCCCC-cchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCCCcCCCCcEEecccC
Q 000874 858 LSSLKFLYISDCAVTE-IPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLPELPLCLKYLDLRDC 936 (1243)
Q Consensus 858 l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~l~~c 936 (1243)
.++|+.|.+..|...+ +.+....+..+..+.+..+.+..++ ...++.+.+.+...|-..+.|+.+.+..|
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~ 839 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEEC 839 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce---------eeecCCCCceeEecccCccchhheehhcC
Confidence 5677777777776553 3334444555555444444443322 11122222222222322234777778888
Q ss_pred CCCCccCC
Q 000874 937 NTLRSLPE 944 (1243)
Q Consensus 937 ~~l~~~~~ 944 (1243)
+.+..+|.
T Consensus 840 p~l~~~P~ 847 (889)
T KOG4658|consen 840 PKLGKLPL 847 (889)
T ss_pred cccccCcc
Confidence 88777775
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=345.85 Aligned_cols=158 Identities=32% Similarity=0.583 Sum_probs=145.3
Q ss_pred CCCCCCCccEEEccccccccCchHHHHHHHHhhcCCceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCcccchhh
Q 000874 2 ASSSSCNYDVFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWC 81 (1243)
Q Consensus 2 ~s~~~~~~dvF~sf~g~d~r~~f~~~L~~~L~~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~s~wc 81 (1243)
+|++..+|||||||||+|||++|++|||++| +++||+||+|++++++|+.|.++|.+||++|+++|||||++||+|.||
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL-~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHL-SRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHH-HHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 4678899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcCCCEEEeEEEEeCcchhccc-cCchhhHHHHHHHhhccChHHHHHHHHHHHHhhhhcCCC-cccCcc
Q 000874 82 LNELVKILECKNTNGQIVIPVFYNVSPSDVRHQ-TGIFGDGFDKLEQQFKEKPEIVQKWRYALRETSHLAGHE-STKFRH 159 (1243)
Q Consensus 82 l~el~~i~~~~~~~~~~v~Pvfy~v~ps~vr~~-~~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~-~~~~~~ 159 (1243)
|+||++|++|+ +.|+||||+|+|+|||+| .|.+ ..+++++||+||+++|+++|+. +..+++
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~ 161 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLKGN 161 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 99999999985 479999999999999997 4432 3588999999999999999983 234688
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 000874 160 DAQLVNKIVEDILKKLEK 177 (1243)
Q Consensus 160 e~~~i~~i~~~i~~~l~~ 177 (1243)
|+++|++|+..|.++|..
T Consensus 162 e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 162 WSEVVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-39 Score=424.58 Aligned_cols=490 Identities=20% Similarity=0.253 Sum_probs=302.1
Q ss_pred CCCCcccccChHHHHHHhhccCcccccceeeecCCCcccccccchhhcCCCccceEEEecCCcccchhhhhccCCceecC
Q 000874 505 EPGKRSRLWDPKEIRRVLKHNKGTDAIEGIFMDLSKIEGINLDSRAFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLP 584 (1243)
Q Consensus 505 ~~~~~~rl~~~~~~~~vl~~~~~~~~i~~i~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~ 584 (1243)
+|.++.+.|...+.+......+....-+...+|++....-...+.+|..+++|++|++++|.+.+. +|
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~------------ip 110 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP------------IP 110 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc------------CC
Confidence 455556667543221111111111122344556655443333466888999999999999886543 34
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCCCCcccccceecccccccc-cccccccccccccccccCCCcccccCC-CCCCCCCc
Q 000874 585 DGIDYLPKNLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVE-QIWEGKKKAFKLKSIDLSHSEHLIRIP-DLSEIPNL 662 (1243)
Q Consensus 585 ~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L 662 (1243)
.++....++|++|++++|.+....+...+++|++|+|++|.+. .+|..+..+++|++|+|++|.+...+| .+.++++|
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred hHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 4444333677777777777763333334667777777777776 566667777777777777777666666 46777777
Q ss_pred cEEeccCCcCCCcCCCcccCCCCcccccccc---------------ccceecccCCccc-ccccccccCCcceEEecccC
Q 000874 663 ERIYLSNCTNLVHVPASIQNFKYLKFPQISG---------------KITRLYLSQSAIE-EVPSSIECLTDLVELDLRDC 726 (1243)
Q Consensus 663 ~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~---------------~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~ 726 (1243)
++|+|++|.....+|..++++++|+.+++.. +|+.|++++|.+. .+|..++.+++|+.|+|++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 7777777766666777777777666544322 4566777777665 56666777777777777777
Q ss_pred cccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc-ccCcccccccCCcEEeecCCCCCCcCCC
Q 000874 727 KRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT-ELPSSFENLLGLEFLTVSGCSKLDKLPD 805 (1243)
Q Consensus 727 ~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 805 (1243)
...+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 766666766777777777777777776677777777777777777777665 4566667777777777777777667777
Q ss_pred ccCCCCCCcEEEccCCCCc-cCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCC-CcchhhcCCCC
Q 000874 806 NIGNLKSLDFIAAVGSAIS-QLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVT-EIPQDIACLSS 883 (1243)
Q Consensus 806 ~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~ 883 (1243)
.++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|. .+..+++|+.|++++|+++ .+|..+..+++
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 7777777777777777664 4455556666666666666665555554 4556667777777777666 35666666666
Q ss_pred CCEEeCcCCCCc-ccchhccCCCCCCEEeecCCCCCCcCCCc--CCCCcEEecccCC-----------------------
Q 000874 884 LTTLNLSGNNFE-SLPASIKQLSQLSSLYLKDCKMLQSLPEL--PLCLKYLDLRDCN----------------------- 937 (1243)
Q Consensus 884 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~l~~c~----------------------- 937 (1243)
|+.|+|++|.++ .+|..+..+++|+.|++++|...+.+|.. .++|+.|++++|.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 666666666666 34444555666666666666555444432 1334444444444
Q ss_pred -CCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCCccccccc--cCcccEEEecCcc
Q 000874 938 -TLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRSIKWRY--KTSTIYFEFTNCL 1007 (1243)
Q Consensus 938 -~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~~~~~~~~--~~~l~~l~~~nC~ 1007 (1243)
....+|..+..+++|+.+++++|.+.+.+|..+..|..+..++|++|.+++.+|... ..+++.+++.+|.
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 444444444445555555555555555555555555555555555555555544332 3345555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-37 Score=408.61 Aligned_cols=445 Identities=22% Similarity=0.246 Sum_probs=321.5
Q ss_pred cccchhhcCCCccceEEEecCCcccchhhhhcc-CC---------ceecCCCCCCCCCCceEEEecCCCCC-CCCCCC-c
Q 000874 545 NLDSRAFTNMSNLRMLKFYVPKFLGMIIEEKLE-DS---------KVQLPDGIDYLPKNLRYLHWYKYPLR-TLPSNF-K 612 (1243)
Q Consensus 545 ~l~~~~f~~l~~Lr~L~l~~~~l~~~~~~~~~~-~~---------~~~l~~~~~~l~~~Lr~L~l~~~~l~-~lp~~~-~ 612 (1243)
.++...|.++++||+|++++|.+++.+|..... .. ...+|..+..+ ++|++|++++|.+. .+|..+ .
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcccccCChhhhh
Confidence 345556778889999999888877655432110 00 01234444444 56777777777654 555554 5
Q ss_pred ccccceecccccccc-cccccccccccccccccCCCcccccCC-CCCCCCCccEEeccCCcCCCcCCCcccCCCCccccc
Q 000874 613 PKNIVELSLRFSKVE-QIWEGKKKAFKLKSIDLSHSEHLIRIP-DLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQ 690 (1243)
Q Consensus 613 ~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~ 690 (1243)
+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+...+| .++++++|++|+|++|.....+|..++++++|+.+.
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 667777777777665 456666677777777777777666666 467777777777777766666777777776666544
Q ss_pred ccc---------------ccceecccCCccc-ccccccccCCcceEEecccCcccccccccccccCccceeecccccCcC
Q 000874 691 ISG---------------KITRLYLSQSAIE-EVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLE 754 (1243)
Q Consensus 691 ~~~---------------~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~ 754 (1243)
+.. +|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+.++++|+.|++++|...+
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 332 4555666666665 455556666666666666666666666666666666666666666666
Q ss_pred cCchhhhcCCcccEeeccccCcc-ccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCc-cCCccccC
Q 000874 755 RFPEILEEMEHLKRIYLERTAIT-ELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAIS-QLPSSVAD 832 (1243)
Q Consensus 755 ~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~-~l~~~~~~ 832 (1243)
.+|..++.+++|+.|++++|.+. .+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 66666666666666666666665 55666666667777777777666677777777777777777777765 45666777
Q ss_pred CCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCC-cchhhcCCCCCCEEeCcCCCCc-ccchhccCCCCCCEE
Q 000874 833 SNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTE-IPQDIACLSSLTTLNLSGNNFE-SLPASIKQLSQLSSL 910 (1243)
Q Consensus 833 l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 910 (1243)
++.|+.|++++|.....++. .+..+++|+.|+|++|++.. +|.. ...++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred CCCCCEEECcCCcccCccCh-hhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEE
Confidence 77888888887776555554 45678888888888888774 4443 35688999999999988 778888999999999
Q ss_pred eecCCCCCCcCCC---cCCCCcEEecccCCCCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCC
Q 000874 911 YLKDCKMLQSLPE---LPLCLKYLDLRDCNTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPD 987 (1243)
Q Consensus 911 ~L~~c~~l~~lp~---l~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~ 987 (1243)
+|++|.....+|. ..++|+.|++++|.....+|..+..+++|+.+++++|++.+.+|..+..+..+..+++++|++.
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 9999999888884 3468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 000874 988 RSIKW 992 (1243)
Q Consensus 988 ~~~~~ 992 (1243)
+.+|.
T Consensus 585 ~~~p~ 589 (968)
T PLN00113 585 GSLPS 589 (968)
T ss_pred eeCCC
Confidence 98874
No 6
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-35 Score=335.93 Aligned_cols=265 Identities=31% Similarity=0.463 Sum_probs=209.5
Q ss_pred chhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH--HhcccCceEEEeeccccccCCCChHHHHHHHHHhh
Q 000874 191 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ--FSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTI 268 (1243)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 268 (1243)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++ ++.+|+.++|+..... ....++.++++.++
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccccccccccc
Confidence 6889999999998866 78999999999999999999999987 8899999999864322 45588889999888
Q ss_pred hcccccc----cCCCccHHHHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhcccCCCcceEEe
Q 000874 269 LSEKLEV----AGPNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGVEEEKIYG 344 (1243)
Q Consensus 269 ~~~~~~~----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~ 344 (1243)
....... +.......+++.|+++++||||||||+...|+.+...++....||+||||||+..++..++.. ...|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~ 153 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIE 153 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 7764332 222345778999999999999999999999999988887778899999999999998776542 27899
Q ss_pred cCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCC-CHHHHHHHHHHHhhccCc---ch
Q 000874 345 VNGLEFDEAFELFCNFAFEEN-HCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLK-RKSHWENVLDDLNRICES---EI 419 (1243)
Q Consensus 345 v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~~~---~i 419 (1243)
|++|+.+||++||.+.++... ...+...+++++|+++|+|+||||+++|++|+.+ +..+|+.+++.+...... ..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998765 3345556789999999999999999999999654 678999999887765431 23
Q ss_pred hhhHhHHhhccccCchhhhhhhheeccccCCCC--HHHHHHHHhh
Q 000874 420 HDIYDILKISFNELIPREKSMFLDIACFFEGED--KDILMRILDD 462 (1243)
Q Consensus 420 ~~v~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~~l~~ 462 (1243)
..+..++..||+.|+++.|+||++||+||.++. .+.+.++|.+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 567999999999999999999999999999876 6678888875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-31 Score=295.74 Aligned_cols=370 Identities=25% Similarity=0.344 Sum_probs=251.4
Q ss_pred cceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCC-cccccceecccccccccccccccc
Q 000874 557 LRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKVEQIWEGKKK 635 (1243)
Q Consensus 557 Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~ 635 (1243)
.|-.++++|.++| ..+|.+...+ ..+++|.+....+..+|... .+.+|++|.+.+|++.++-..+..
T Consensus 9 VrGvDfsgNDFsg-----------~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSG-----------DRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred eecccccCCcCCC-----------CcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence 4445566666543 2345555554 56777777777777777766 677777777777777777777777
Q ss_pred cccccccccCCCccc--ccCCCCCCCCCccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCccccccccc-
Q 000874 636 AFKLKSIDLSHSEHL--IRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSI- 712 (1243)
Q Consensus 636 l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i- 712 (1243)
++.|+.+++.+|++. +..+++-.+..|..|+||+| .+.+.|..+..-+ ++-.|+||+|+|++||.++
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AK---------n~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAK---------NSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhc---------CcEEEEcccCccccCCchHH
Confidence 777777777777642 33336777777777777776 4566665554444 3445777777777777654
Q ss_pred ccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc--ccCcccccccCCc
Q 000874 713 ECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT--ELPSSFENLLGLE 790 (1243)
Q Consensus 713 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~ 790 (1243)
-+|+.|-.|||++|+ +..+|+.+..|..|++|.|++|.....-...+..|++|+.|.+++++-+ .+|.++..+.+|.
T Consensus 147 inLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred HhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 357777777777765 4556666777777777777777665544444555667777777776544 6777777777777
Q ss_pred EEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCC
Q 000874 791 FLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCA 870 (1243)
Q Consensus 791 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~ 870 (1243)
.++++.|+ +..+|+.+.++++|+.|++++|.|+++........+|++|+++.|+ ++.+|. .+..++.|+.|.+.+|+
T Consensus 226 dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~-avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 226 DVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD-AVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH-HHhhhHHHHHHHhccCc
Confidence 77777654 5566777777777777777777777776666666777777777765 556665 56677777777777777
Q ss_pred CC--CcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCC---CcCCCCcEEecccCCCCCccCCC
Q 000874 871 VT--EIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLP---ELPLCLKYLDLRDCNTLRSLPEL 945 (1243)
Q Consensus 871 l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp---~l~~~L~~L~l~~c~~l~~~~~~ 945 (1243)
++ .+|+.++.+..|+.+..++|++.-+|.++..|+.|+.|.|++|. +-.+| .+++.|+.||+..|+.+...|..
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 66 47777777777777777777777777777777777777777666 44455 35566777777777777766654
Q ss_pred cccccccc
Q 000874 946 PLCLESLK 953 (1243)
Q Consensus 946 ~~~l~~L~ 953 (1243)
-..-+.|.
T Consensus 382 ~da~~~le 389 (1255)
T KOG0444|consen 382 NDARKKLE 389 (1255)
T ss_pred chhhhcce
Confidence 33333333
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-29 Score=279.38 Aligned_cols=379 Identities=21% Similarity=0.198 Sum_probs=308.1
Q ss_pred eeeecCCCcccccccchhhcCCCc--cceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCC
Q 000874 533 GIFMDLSKIEGINLDSRAFTNMSN--LRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSN 610 (1243)
Q Consensus 533 ~i~l~ls~~~~~~l~~~~f~~l~~--Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~ 610 (1243)
...+|++..+.-.++...+.+.-- -++|++++|.++...+ .++..+ ++|+.+++..|.++.+|..
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~------------~~f~nl-~nLq~v~l~~N~Lt~IP~f 120 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDF------------EFFYNL-PNLQEVNLNKNELTRIPRF 120 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcH------------HHHhcC-Ccceeeeeccchhhhcccc
Confidence 345666666544454445554433 3559999998755432 233344 6999999999999999988
Q ss_pred C-cccccceeccccccccccc-ccccccccccccccCCCcccccC-CCCCCCCCccEEeccCCcCCCcCCCcccCCCCcc
Q 000874 611 F-KPKNIVELSLRFSKVEQIW-EGKKKAFKLKSIDLSHSEHLIRI-PDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLK 687 (1243)
Q Consensus 611 ~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~ 687 (1243)
. ...+|+.|+|.+|.|.++- +.+..++.|++||||.|.+.... |.|..-.++++|+|++|.+...-...|.+|.+
T Consensus 121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns-- 198 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS-- 198 (873)
T ss_pred cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch--
Confidence 7 4556999999999999874 46778999999999999876533 46888899999999999877665666666654
Q ss_pred ccccccccceecccCCccccccc-ccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcc
Q 000874 688 FPQISGKITRLYLSQSAIEEVPS-SIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHL 766 (1243)
Q Consensus 688 ~l~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 766 (1243)
|..|.|+.|+|+.+|. ++.+|++|+.|+|..|.+-..-...|.+|++|+.|.|..|.+...-...|..|.++
T Consensus 199 -------L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 199 -------LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred -------heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 4568999999999998 55569999999999998655546668899999999999999888777888999999
Q ss_pred cEeeccccCccccCc-ccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEeccC
Q 000874 767 KRIYLERTAITELPS-SFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSS-VADSNVLRMLFFCRC 844 (1243)
Q Consensus 767 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~ 844 (1243)
++|+|..|+++.+.. ++-+|+.|+.|++++|.+...-++...-.++|+.|+++.|.+..+++. +..+..|+.|.|+.|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 999999999998865 588999999999999999988888888999999999999999999764 677899999999988
Q ss_pred CCCCCCChhhccCCCCCcEEEeccCCCC----CcchhhcCCCCCCEEeCcCCCCcccch-hccCCCCCCEEeecCCCCCC
Q 000874 845 RRLLSLPRLLLSGLSSLKFLYISDCAVT----EIPQDIACLSSLTTLNLSGNNFESLPA-SIKQLSQLSSLYLKDCKMLQ 919 (1243)
Q Consensus 845 ~~l~~l~~~~~~~l~~L~~L~Ls~~~l~----~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~ 919 (1243)
. +..+....|.++.+|+.|+|++|.+. +-...+..+++|+.|.|.||++.++|. .+.+|++|++|+|.+|.+-.
T Consensus 352 s-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 352 S-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred c-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 6 56667778889999999999999887 334456789999999999999999987 78999999999999999776
Q ss_pred cCCCcC--CCCcEEecc
Q 000874 920 SLPELP--LCLKYLDLR 934 (1243)
Q Consensus 920 ~lp~l~--~~L~~L~l~ 934 (1243)
.-|..+ ..|+.|.+.
T Consensus 431 Iq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 431 IQPNAFEPMELKELVMN 447 (873)
T ss_pred ecccccccchhhhhhhc
Confidence 666433 246665543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.9e-30 Score=286.12 Aligned_cols=346 Identities=22% Similarity=0.294 Sum_probs=299.3
Q ss_pred hcCCCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCC-cccccceecccccccc--
Q 000874 551 FTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKVE-- 627 (1243)
Q Consensus 551 f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~-- 627 (1243)
...|++++.|++....+ ..+|+.+..+ .+|.+|.+.+|++.++-... .++.|+.+.+++|+++
T Consensus 28 v~qMt~~~WLkLnrt~L-------------~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKL-------------EQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred HHHhhheeEEEechhhh-------------hhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC
Confidence 34799999999976542 4567777777 79999999999999888776 8899999999999998
Q ss_pred cccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCc-ccCCCCccccccccccceecccCCccc
Q 000874 628 QIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPAS-IQNFKYLKFPQISGKITRLYLSQSAIE 706 (1243)
Q Consensus 628 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~-i~~L~~L~~l~~~~~L~~L~L~~n~i~ 706 (1243)
-+|..+..+..|.+||||+|++......+....++-.|+||+|+ +..+|.. +-+|+.|-+ |+||+|.++
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLf---------LDLS~NrLe 163 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLF---------LDLSNNRLE 163 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhh---------hccccchhh
Confidence 67999999999999999999966555579999999999999984 5667754 456776555 899999999
Q ss_pred ccccccccCCcceEEecccCcccccccccccccCccceeecccccC-cCcCchhhhcCCcccEeeccccCccccCccccc
Q 000874 707 EVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLN-LERFPEILEEMEHLKRIYLERTAITELPSSFEN 785 (1243)
Q Consensus 707 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 785 (1243)
.+|+.+..|.+|++|+|++|+....--..+-.+++|+.|.+++... +..+|..+..+.+|+.++++.|++..+|..+-+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~ 243 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK 243 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh
Confidence 9999999999999999999986432111122388999999998654 457899999999999999999999999999999
Q ss_pred ccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCC-CCCCChhhccCCCCCcEE
Q 000874 786 LLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRR-LLSLPRLLLSGLSSLKFL 864 (1243)
Q Consensus 786 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~l~~L~~L 864 (1243)
+++|+.|+|++|.+. .+....+...+|+.|+++.|.++.+|+.+..++.|+.|.+.+|.. ...+|. .++.+.+|+.+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHH
Confidence 999999999998754 344456677899999999999999999999999999999988875 455676 68899999999
Q ss_pred EeccCCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCC
Q 000874 865 YISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 865 ~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
..++|.+.-+|+.+..|..|+.|.|+.|++.++|..|.-|+.|+.||+..|+.+..-|
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999988766
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.1e-29 Score=273.97 Aligned_cols=363 Identities=22% Similarity=0.242 Sum_probs=274.6
Q ss_pred CCCCCCceEEEecCCCCCCCCCCC--cccccceecccccccccccccccccccccccccCCCcccccCC-CCCCCCCccE
Q 000874 588 DYLPKNLRYLHWYKYPLRTLPSNF--KPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIP-DLSEIPNLER 664 (1243)
Q Consensus 588 ~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 664 (1243)
..+|..-+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+|.+..... .++.++.|+.
T Consensus 74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 345677888999999998777663 8899999999999999999888888889999999998766555 4888899999
Q ss_pred EeccCCcCCCcCC-CcccCCCCccccccccccceecccCCccccccc-ccccCCcceEEecccCcccccccccccccCcc
Q 000874 665 IYLSNCTNLVHVP-ASIQNFKYLKFPQISGKITRLYLSQSAIEEVPS-SIECLTDLVELDLRDCKRLKRISTRFCKLKSL 742 (1243)
Q Consensus 665 L~L~~~~~l~~~p-~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 742 (1243)
|||+.|.. ..+| .++.. ..++++|+|++|.|+.+.. .+..+.+|..|.|+.|++...-+..|.+|+.|
T Consensus 154 lDLSrN~i-s~i~~~sfp~---------~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 154 LDLSRNLI-SEIPKPSFPA---------KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhchh-hcccCCCCCC---------CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 99998743 3333 22221 1267778888888887754 66778888888888888777766777778888
Q ss_pred ceeecccccCcCcCchhhhcCCcccEeeccccCccccCcc-cccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCC
Q 000874 743 VKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSS-FENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGS 821 (1243)
Q Consensus 743 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 821 (1243)
+.|+|..|.+...---.|.++++|+.|.|..|.+..+.+. |-.+.+++.|+|..|+....-..++.+|++|+.|+++.|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 8888888877655455678888888888888888888765 677888888888888877777777888888888888888
Q ss_pred CCccC-CccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcch-hhcCCCCCCEEeCcCCCCc-cc-
Q 000874 822 AISQL-PSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQ-DIACLSSLTTLNLSGNNFE-SL- 897 (1243)
Q Consensus 822 ~i~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~-~l- 897 (1243)
.|..+ +++...+++|+.|+|++|. +..+++..+..+..|++|+|++|.+..+-+ .+.++++|++|+|+.|.+. .+
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 88876 3455667888888887776 566777777788888888888888876533 4567888888888888776 22
Q ss_pred --chhccCCCCCCEEeecCCCCCCcCC----CcCCCCcEEecccCCCCCccCCCcccccccccccCCCCCCC
Q 000874 898 --PASIKQLSQLSSLYLKDCKMLQSLP----ELPLCLKYLDLRDCNTLRSLPELPLCLESLKARNCKGLQSL 963 (1243)
Q Consensus 898 --p~~l~~l~~L~~L~L~~c~~l~~lp----~l~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~l~~~~~~~~ 963 (1243)
...+.+|++|+.|.+.+|+ ++++| .-+++|++|||.+|.....-|..|..+ .|+.+-+....++
T Consensus 383 Daa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred cchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 2246678888888888876 55565 345678888888887777667666655 5555555444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=9.9e-30 Score=269.92 Aligned_cols=414 Identities=21% Similarity=0.270 Sum_probs=287.5
Q ss_pred hcCCCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCC-cccccceecccccccccc
Q 000874 551 FTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKVEQI 629 (1243)
Q Consensus 551 f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l 629 (1243)
+..-..|..|.+++|.+ ..+.+++..+ ..|.+|+.++|.+..+|+.+ .+..++.|+.++|++.++
T Consensus 41 wW~qv~l~~lils~N~l-------------~~l~~dl~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~l 106 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDL-------------EVLREDLKNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSEL 106 (565)
T ss_pred hhhhcchhhhhhccCch-------------hhccHhhhcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhc
Confidence 33444566667766643 2333444444 46778888888888888776 677888888888888888
Q ss_pred cccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCcccCCCCcccccccc--------------cc
Q 000874 630 WEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISG--------------KI 695 (1243)
Q Consensus 630 ~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~--------------~L 695 (1243)
|+.+..+.+|+.|++++|.+....++++.+..|+.|+..+| ....+|.++.++.+|..+...+ .|
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL 185 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH
Confidence 88888888888888888887777777888888888877776 4556777777666665444433 46
Q ss_pred ceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccC
Q 000874 696 TRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTA 775 (1243)
Q Consensus 696 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 775 (1243)
++|+...|-++++|+.++.+.+|..|+|..|++ ..+| .|.++..|.+|+++.|.+.....+...++++|..|+|..|+
T Consensus 186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred HhcccchhhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc
Confidence 678888888888888888888888888888764 4556 47778888888887765543333444578888888888888
Q ss_pred ccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccc-------------------------
Q 000874 776 ITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSV------------------------- 830 (1243)
Q Consensus 776 l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~------------------------- 830 (1243)
++++|..+..+.+|++|++++|. +..+|..++++ .|+.|.+.||.+..+-..+
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 88888888888888888888876 45677788888 8888888888765221110
Q ss_pred -----------------cCCCCCcEEEeccCCCCCCCChhhcc------------------C----CCC----CcEEEec
Q 000874 831 -----------------ADSNVLRMLFFCRCRRLLSLPRLLLS------------------G----LSS----LKFLYIS 867 (1243)
Q Consensus 831 -----------------~~l~~L~~L~l~~~~~l~~l~~~~~~------------------~----l~~----L~~L~Ls 867 (1243)
....+.+.|++++-+ ++.+|...|. . ++. ++.+.++
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 011223334433322 2223322111 0 111 2345677
Q ss_pred cCCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCCCcC---CCCcEEecccCCCCCccCC
Q 000874 868 DCAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLPELP---LCLKYLDLRDCNTLRSLPE 944 (1243)
Q Consensus 868 ~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~l~~c~~l~~~~~ 944 (1243)
+|.+.-+|..+..+++|..|+|++|-+..+|..++.+..|+.|+|++|. ...+|... ..|+.+-.++ +.+..++.
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~-nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASN-NQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhcc-ccccccCh
Confidence 7777778888888999999999999888999888888889999999884 34444322 2233443444 44555544
Q ss_pred C-cccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCC
Q 000874 945 L-PLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPD 987 (1243)
Q Consensus 945 ~-~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~ 987 (1243)
. ..++.+|..+|+.+|.+ -.+|+.++++..+..+.|.+|++.
T Consensus 499 ~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 3 77888888888877654 457888888888888889988876
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.8e-28 Score=260.34 Aligned_cols=406 Identities=23% Similarity=0.260 Sum_probs=291.2
Q ss_pred CceEEEecCCCCCCCCCCC-cccccceecccccccccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCc
Q 000874 593 NLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCT 671 (1243)
Q Consensus 593 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 671 (1243)
.|..|.+++|.+..+..+. .+..|.+|++.+|++.++|..+..+..++.|+.++|++....+.+..+++|..|+.+.|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n- 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN- 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-
Confidence 5778889999998777766 88999999999999999999999999999999999998887778999999999999997
Q ss_pred CCCcCCCcccCCCCcccccccc--------------ccceecccCCcccccccccccCCcceEEecccCccccccccccc
Q 000874 672 NLVHVPASIQNFKYLKFPQISG--------------KITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFC 737 (1243)
Q Consensus 672 ~l~~~p~~i~~L~~L~~l~~~~--------------~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 737 (1243)
....+|++++.+..|..++... ++..|++.+|.+.++|+..-+++.|++||...| .++.+|+.++
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg 203 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELG 203 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhc
Confidence 4677888898888775532211 233444444444444444434445555554443 2444555555
Q ss_pred ccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCccc-ccccCCcEEeecCCCCCCcCCCccCCCCCCcEE
Q 000874 738 KLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSF-ENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFI 816 (1243)
Q Consensus 738 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 816 (1243)
.|.+|+.|++..|.+. .+| .|+++..|++|+++.|.++.+|... .++++|..|++.+|. +...|+.+..+.+|+.|
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERL 280 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhh
Confidence 5555555555554432 233 4555555666666666666666554 378899999999975 67889999999999999
Q ss_pred EccCCCCccCCccccCCCCCcEEEeccCCCCC------------------C-------------------CChhh---cc
Q 000874 817 AAVGSAISQLPSSVADSNVLRMLFFCRCRRLL------------------S-------------------LPRLL---LS 856 (1243)
Q Consensus 817 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~------------------~-------------------l~~~~---~~ 856 (1243)
++++|.++.+|.+++++ .|+.|.+.+|+.-+ + .+... ..
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 99999999999999999 99999999887410 0 01101 11
Q ss_pred CCCCCcEEEeccCCCCCcchhhcCCCC---CCEEeCcCCCCcc------------------------cchhccCCCCCCE
Q 000874 857 GLSSLKFLYISDCAVTEIPQDIACLSS---LTTLNLSGNNFES------------------------LPASIKQLSQLSS 909 (1243)
Q Consensus 857 ~l~~L~~L~Ls~~~l~~lp~~l~~l~~---L~~L~Ls~n~l~~------------------------lp~~l~~l~~L~~ 909 (1243)
...+.+.|++++-+++.+|........ ....++++|++.+ +|..++.+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 234667777777777777665432222 4455555555444 4445678899999
Q ss_pred EeecCCCCCCcCCC---cCCCCcEEecccCCCCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCC
Q 000874 910 LYLKDCKMLQSLPE---LPLCLKYLDLRDCNTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSP 986 (1243)
Q Consensus 910 L~L~~c~~l~~lp~---l~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~ 986 (1243)
|+|++|. +..+|. ....|+.|+++.| ....+|.....++.++.+-.++|++...-|+.+..|..+..++|..|.+
T Consensus 440 L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 440 LDLSNNL-LNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eecccch-hhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 9999876 677773 3345999999998 5566777666677777777777888777778899999999999999998
Q ss_pred Cccccc-cccCcccEEEecCc
Q 000874 987 DRSIKW-RYKTSTIYFEFTNC 1006 (1243)
Q Consensus 987 ~~~~~~-~~~~~l~~l~~~nC 1006 (1243)
...-|. +.++++++|.+.|-
T Consensus 518 q~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 518 QQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhCChhhccccceeEEEecCC
Confidence 754433 34678888888774
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=4.8e-27 Score=274.37 Aligned_cols=412 Identities=20% Similarity=0.215 Sum_probs=239.2
Q ss_pred chhhcCCCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCC-cccccceeccccccc
Q 000874 548 SRAFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKV 626 (1243)
Q Consensus 548 ~~~f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i 626 (1243)
-++..+.-+|+.|++++|.+ ..+|..+..+ .+|+.|+++.|.+.++|... .+.+|++|.|.+|.+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~-------------~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQI-------------SSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hHHhhheeeeEEeecccccc-------------ccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 34445555688899988863 3445555555 58888999999998888765 788899999999999
Q ss_pred ccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCcccCCCCccccccc-------cccce-e
Q 000874 627 EQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQIS-------GKITR-L 698 (1243)
Q Consensus 627 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~-------~~L~~-L 698 (1243)
..+|.++..+.+|+.|+++.|.+....+-+..+..++.+..++|..+..++...-+.-.|+...+. ++++. |
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~l 183 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQL 183 (1081)
T ss_pred hcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheee
Confidence 999988888899999999998877666667777777777777774443333332222222222221 13444 7
Q ss_pred cccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccc
Q 000874 699 YLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITE 778 (1243)
Q Consensus 699 ~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~ 778 (1243)
+|.+|.+.. ..+..+.+|+.|....|.+.... -..++|+.|+.+.|.+....+.. .-.+|++++++.|.++.
T Consensus 184 dLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 184 DLRYNEMEV--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLSN 255 (1081)
T ss_pred ecccchhhh--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--ccccceeeecchhhhhc
Confidence 777777762 23455666666666655533221 12456666666666665333221 12356777777777777
Q ss_pred cCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhcc--
Q 000874 779 LPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLS-- 856 (1243)
Q Consensus 779 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~-- 856 (1243)
+|+++..+.+|+.|...+|.+ ..+|..+....+|+.|.+..|.+..+|.....+++|++|++..|+ +.++|...+.
T Consensus 256 lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVL 333 (1081)
T ss_pred chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhh
Confidence 777677777777777766654 455555666666666666666666666666666666666666554 3334433222
Q ss_pred -----------------------CCCCCcEEEeccCCCCC-cchhhcCCCCCCEEeCcCCCCcccch-hccCCCCCCEEe
Q 000874 857 -----------------------GLSSLKFLYISDCAVTE-IPQDIACLSSLTTLNLSGNNFESLPA-SIKQLSQLSSLY 911 (1243)
Q Consensus 857 -----------------------~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 911 (1243)
.++.|+.|++.+|.+++ .-+.+.++.+|+.|+|++|.+.++|+ .+.++..|++|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 23345555555555553 22334455555555555555555554 334555555555
Q ss_pred ecCCCCCCcCCCcCCCCcEEecccCCCCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCCc-cc
Q 000874 912 LKDCKMLQSLPELPLCLKYLDLRDCNTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDR-SI 990 (1243)
Q Consensus 912 L~~c~~l~~lp~l~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~~-~~ 990 (1243)
||+|+ ++.+ |.....+..|+.+.+.+|+++. .| .+..|..+.+++++.|+++. .+
T Consensus 414 LSGNk-L~~L---------------------p~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 414 LSGNK-LTTL---------------------PDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccch-hhhh---------------------hHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhh
Confidence 55554 3333 3333344444444444444332 22 44444444455555554442 22
Q ss_pred ccccc-CcccEEEecCcc
Q 000874 991 KWRYK-TSTIYFEFTNCL 1007 (1243)
Q Consensus 991 ~~~~~-~~l~~l~~~nC~ 1007 (1243)
+.... ..|++|++++-.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 22222 445555555544
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5e-23 Score=272.14 Aligned_cols=339 Identities=25% Similarity=0.426 Sum_probs=265.4
Q ss_pred cccccccccccccCCCcc------cccCC-CCCCCC-CccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCC
Q 000874 632 GKKKAFKLKSIDLSHSEH------LIRIP-DLSEIP-NLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQS 703 (1243)
Q Consensus 632 ~~~~l~~L~~L~L~~~~~------~~~~~-~l~~l~-~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n 703 (1243)
.+..+++|+.|.+.++.. ...+| .+..++ +|+.|++.++ .+..+|..+. . .+|+.|++.++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~-~---------~~L~~L~L~~s 621 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFR-P---------ENLVKLQMQGS 621 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCC-c---------cCCcEEECcCc
Confidence 455677777777755431 12233 355554 6888988886 4566776552 2 35667899999
Q ss_pred cccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeecccc-CccccCcc
Q 000874 704 AIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERT-AITELPSS 782 (1243)
Q Consensus 704 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n-~l~~lp~~ 782 (1243)
.+..++..+..+++|+.|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++.+++|+.|++++| .++.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 9999999999999999999999988888886 888999999999999999999999999999999999985 67788886
Q ss_pred cccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCC------CCCChhhcc
Q 000874 783 FENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRL------LSLPRLLLS 856 (1243)
Q Consensus 783 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l------~~l~~~~~~ 856 (1243)
+ ++++|+.|++++|..++.+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++... ..++.....
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhh
Confidence 6 7999999999999988888764 467899999999999998876 5788998888775431 222222334
Q ss_pred CCCCCcEEEeccCC-CCCcchhhcCCCCCCEEeCcCC-CCcccchhccCCCCCCEEeecCCCCCCcCCCcCCCCcEEecc
Q 000874 857 GLSSLKFLYISDCA-VTEIPQDIACLSSLTTLNLSGN-NFESLPASIKQLSQLSSLYLKDCKMLQSLPELPLCLKYLDLR 934 (1243)
Q Consensus 857 ~l~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~l~ 934 (1243)
.+++|+.|+|++|. +.++|..++++++|+.|+|++| ++..+|..+ .+++|+.|+|++|..+..+|..+.+|+.|+++
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence 46789999999985 4469999999999999999987 677888766 78999999999999999999988999999999
Q ss_pred cCCCCCccCCCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCCccccccccCcccEEEecCccccch
Q 000874 935 DCNTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRSIKWRYKTSTIYFEFTNCLELNG 1011 (1243)
Q Consensus 935 ~c~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~~~~~~~~~~~l~~l~~~nC~~l~~ 1011 (1243)
+|. ++.+|..+..+++|+.+++.++..+..+|..+..| ++++.++|.+|.+|+.
T Consensus 855 ~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L----------------------~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 855 RTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL----------------------KHLETVDFSDCGALTE 908 (1153)
T ss_pred CCC-CccChHHHhcCCCCCEEECCCCCCcCccCcccccc----------------------cCCCeeecCCCccccc
Confidence 875 45678777778888888777655554455433222 3456688888888864
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-25 Score=261.90 Aligned_cols=405 Identities=25% Similarity=0.291 Sum_probs=263.7
Q ss_pred eeecCCCcccccccchhhcCCCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCC-c
Q 000874 534 IFMDLSKIEGINLDSRAFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNF-K 612 (1243)
Q Consensus 534 i~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~ 612 (1243)
-.+|++.+....+ +.....+.+|+.|.++.|.+. .+|.....+ ++|++|.+.+|.+..+|..+ .
T Consensus 48 ~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~-------------~vp~s~~~~-~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 48 KSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIR-------------SVPSSCSNM-RNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred EEeeccccccccC-CchhhhHHHHhhcccchhhHh-------------hCchhhhhh-hcchhheeccchhhcCchhHHh
Confidence 3455555543332 234566778888888877542 234344444 67888888888888888877 7
Q ss_pred ccccceecccccccccccccccccccccccccCCCc-------------------ccccCC-CCCCCCCccEEeccCCcC
Q 000874 613 PKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSE-------------------HLIRIP-DLSEIPNLERIYLSNCTN 672 (1243)
Q Consensus 613 ~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~-------------------~~~~~~-~l~~l~~L~~L~L~~~~~ 672 (1243)
+++|++|++++|.+..+|..+..+..+..+..++|. +...++ ++..+.+ .|+|+.|..
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 888888888888888887777666666666666662 222222 1222222 366665543
Q ss_pred CCcCCCcccCCCCc-------ccc-----------------------ccccccceecccCCcccccccccccCCcceEEe
Q 000874 673 LVHVPASIQNFKYL-------KFP-----------------------QISGKITRLYLSQSAIEEVPSSIECLTDLVELD 722 (1243)
Q Consensus 673 l~~~p~~i~~L~~L-------~~l-----------------------~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~ 722 (1243)
....-..+.+++.| ..+ ..+.++++++++.|.++.+|++++.+.+|+.|+
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN 270 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec
Confidence 31111111111111 001 112256677777777777777777777777777
Q ss_pred cccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCccccc-cc-CCcEEeecCCCCC
Q 000874 723 LRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFEN-LL-GLEFLTVSGCSKL 800 (1243)
Q Consensus 723 L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~-l~-~L~~L~L~~~~~~ 800 (1243)
+.+|.+ ..+|..+...++|+.|.+..|. ++.+|...+.++.|++|+|..|++..+|..+-. +. +|..|+.+.+..
T Consensus 271 ~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l- 347 (1081)
T KOG0618|consen 271 ANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL- 347 (1081)
T ss_pred ccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-
Confidence 777664 5566666667777777776654 345566666677777777777777777664322 11 244455444432
Q ss_pred CcCC-CccCCCCCCcEEEccCCCCcc-CCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhh
Q 000874 801 DKLP-DNIGNLKSLDFIAAVGSAISQ-LPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDI 878 (1243)
Q Consensus 801 ~~lp-~~l~~l~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l 878 (1243)
..+| ..=..++.|+.|.+.+|.+++ .-+.+.+..+|+.|+|++|. +..+|...+.+++.|++|+||||.++.+|..+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv 426 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTV 426 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHH
Confidence 2222 112245567778888887763 34556777889999998876 66788878889999999999999999999999
Q ss_pred cCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCc-CC-CcC-CCCcEEecccCCCCCccCCCcccccccccc
Q 000874 879 ACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQS-LP-ELP-LCLKYLDLRDCNTLRSLPELPLCLESLKAR 955 (1243)
Q Consensus 879 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~-lp-~l~-~~L~~L~l~~c~~l~~~~~~~~~l~~L~~l 955 (1243)
..++.|++|...+|++..+| .+..++.|+.+|++.|..... +| ..| +.|++||+++|..+..--..+..++.+...
T Consensus 427 a~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQM 505 (1081)
T ss_pred HhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhe
Confidence 99999999999999999999 788999999999998876443 33 456 789999999998755444444444444444
Q ss_pred cCCCC
Q 000874 956 NCKGL 960 (1243)
Q Consensus 956 ~~~~~ 960 (1243)
+..-+
T Consensus 506 ~i~~~ 510 (1081)
T KOG0618|consen 506 DITLN 510 (1081)
T ss_pred ecccC
Confidence 44333
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=7.5e-21 Score=189.01 Aligned_cols=133 Identities=33% Similarity=0.570 Sum_probs=117.9
Q ss_pred EEEccccccccCchHHHHHHHHhhcC--CceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCcccchhhHHHHHHH
Q 000874 11 VFLSFRGVDTRASFTCHLYDSLFERK--KIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWCLNELVKI 88 (1243)
Q Consensus 11 vF~sf~g~d~r~~f~~~L~~~L~~~~--gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~s~wcl~el~~i 88 (1243)
|||||++.+++..|+++|..+| ++. |+++|++++|+.+|..+.+++.++|++||++|+|+|++|++|.||+.||..+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~L-e~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPEL-EERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHH-HCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHH-HhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 8999999666799999999999 888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCC--CEEEeEEEEeCcchhc-cccCchhhHHHHHHHhhccC--hHHHHHHHHHHH
Q 000874 89 LECKNTNG--QIVIPVFYNVSPSDVR-HQTGIFGDGFDKLEQQFKEK--PEIVQKWRYALR 144 (1243)
Q Consensus 89 ~~~~~~~~--~~v~Pvfy~v~ps~vr-~~~~~~~~~~~~~~~~~~~~--~~~v~~w~~aL~ 144 (1243)
+++..+.+ ++|+|+||+|.+++++ ++.+.|+.+|..+....... ......|++++.
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 99987755 8899999999999999 79999998888777665443 567889998865
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.2e-18 Score=212.99 Aligned_cols=261 Identities=21% Similarity=0.254 Sum_probs=139.4
Q ss_pred CceEEEecCCCCCCCCCCCcccccceecccccccccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcC
Q 000874 593 NLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTN 672 (1243)
Q Consensus 593 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 672 (1243)
+-..|+++++.++++|..+. .+|+.|.+.+|+++.+|.. +++|++|+|++|++.. +|.+ .++|+.|+|++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL--PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc--ccccceeeccCCc-
Confidence 34456666666666666542 3566666666666666542 3556666666665442 3322 3456666666653
Q ss_pred CCcCCCcccCCCCccccccccccceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccC
Q 000874 673 LVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLN 752 (1243)
Q Consensus 673 l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 752 (1243)
+..+|.. +.+|+.|++++|.++.+|.. +++|+.|+|++|.+.+ +|.. ..+|+.|++++|.+
T Consensus 274 L~~Lp~l------------p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 274 LTHLPAL------------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL 334 (788)
T ss_pred hhhhhhc------------hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence 2222221 12344455566666666542 3456666666664332 3331 22445555555443
Q ss_pred cCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccC
Q 000874 753 LERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVAD 832 (1243)
Q Consensus 753 ~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~ 832 (1243)
.. +|.. ..+|+.|+|++|.++.+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+..+
T Consensus 335 ~~-LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~L------ 397 (788)
T PRK15387 335 TS-LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL------ 397 (788)
T ss_pred cc-cccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCC------
Confidence 32 3321 12455555555555555532 233444445444332 23321 12344444444444433
Q ss_pred CCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEee
Q 000874 833 SNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYL 912 (1243)
Q Consensus 833 l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 912 (1243)
|. ..++|+.|++++|.++.+|.. +.+|+.|+|++|+++.+|..+..+++|+.|+|
T Consensus 398 ------------------P~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 398 ------------------PV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred ------------------CC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 32 124677777777777777653 34677778888888888877777888888888
Q ss_pred cCCCCCCcCC
Q 000874 913 KDCKMLQSLP 922 (1243)
Q Consensus 913 ~~c~~l~~lp 922 (1243)
++|+.....+
T Consensus 453 s~N~Ls~~~~ 462 (788)
T PRK15387 453 EGNPLSERTL 462 (788)
T ss_pred CCCCCCchHH
Confidence 8887665544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=3.6e-18 Score=208.78 Aligned_cols=243 Identities=26% Similarity=0.299 Sum_probs=147.2
Q ss_pred ecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc
Q 000874 698 LYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT 777 (1243)
Q Consensus 698 L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 777 (1243)
|++.+|.++.+|.. +++|++|+|++|.+. .+|.. .++|+.|++++|.+. .+|.. +++|+.|++++|.++
T Consensus 227 L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 227 LVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT 295 (788)
T ss_pred EEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc
Confidence 44444444444431 345555555554332 33321 245555555555432 22322 134555666666666
Q ss_pred ccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccC
Q 000874 778 ELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSG 857 (1243)
Q Consensus 778 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 857 (1243)
.+|.. +++|+.|++++|.+.+ +|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|. +..+|. .
T Consensus 296 ~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~----l 360 (788)
T PRK15387 296 SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ-LASLPT----L 360 (788)
T ss_pred ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccccccc---ccccceEecCCCc-cCCCCC----C
Confidence 55542 3456666666654432 3331 12455566666666665532 2356666666554 334443 1
Q ss_pred CCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCCCcCCCCcEEecccCC
Q 000874 858 LSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLPELPLCLKYLDLRDCN 937 (1243)
Q Consensus 858 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~l~~c~ 937 (1243)
.++|+.|++++|.+..+|.. +++|+.|+|++|.|+.+|.. .++|+.|++++|. +..+|..+.+|+.|++++|.
T Consensus 361 p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~Nq 433 (788)
T PRK15387 361 PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ 433 (788)
T ss_pred CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccCc
Confidence 35677788888888877753 35788888888888887753 3578888888887 45678777788888888876
Q ss_pred CCCccCCCcccccccccccCCCCCCCCCCChhhhhcc
Q 000874 938 TLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELD 974 (1243)
Q Consensus 938 ~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~ 974 (1243)
. ..+|..+..+++|..+++++|++.+..|..|.++.
T Consensus 434 L-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 434 L-TRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred c-cccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 4 46787777888888888888888888777775553
No 19
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.73 E-value=1.7e-17 Score=165.63 Aligned_cols=136 Identities=39% Similarity=0.664 Sum_probs=116.0
Q ss_pred CccEEEcccc-ccccCchHHHHHHHHhhcCCceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCcccchhhHHHHH
Q 000874 8 NYDVFLSFRG-VDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWCLNELV 86 (1243)
Q Consensus 8 ~~dvF~sf~g-~d~r~~f~~~L~~~L~~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~s~wcl~el~ 86 (1243)
.|||||||++ +++++.|+.+|..+| ...|+.+|.|++ ...|.... +|.++|++|++.|+|+|++|..|.||..|+.
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l-~~~~~~v~~d~~-~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~ 77 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKL-RGYGLCVFIDDF-EPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELV 77 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHh-hcCCcEEEecCc-ccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence 5999999999 677899999999999 999999999976 44344444 9999999999999999999999999999999
Q ss_pred HHHHhHhc-CCCEEEeEEEEeCcchhccccCchhhHHHHHHHhhccChHHHHHHHHHHHHhh
Q 000874 87 KILECKNT-NGQIVIPVFYNVSPSDVRHQTGIFGDGFDKLEQQFKEKPEIVQKWRYALRETS 147 (1243)
Q Consensus 87 ~i~~~~~~-~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~~ 147 (1243)
.++++..+ ..+.|+||+|+..|+.+..+.+.++.++.....++.....+ +.|+.++..++
T Consensus 78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 99998765 56789999999999999999999999998875444433333 68998887765
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=7.8e-19 Score=187.66 Aligned_cols=228 Identities=19% Similarity=0.238 Sum_probs=165.5
Q ss_pred CCCCCCceEEEecCCCCCCCCCCC--cccccceecccccccccc-cccccccccccccccCCCcccccCC--CCCCCCCc
Q 000874 588 DYLPKNLRYLHWYKYPLRTLPSNF--KPKNIVELSLRFSKVEQI-WEGKKKAFKLKSIDLSHSEHLIRIP--DLSEIPNL 662 (1243)
Q Consensus 588 ~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L 662 (1243)
..+|.+-..+++..|.|+++|+.. .+++|+.|+|++|+|+.+ |..++.+..|..|-+.+++....+| .|.++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 455677888899999999998764 788999999999999877 6678888888877777754455565 38888888
Q ss_pred cEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCccccccc-ccccCCcceEEecccCc--------------
Q 000874 663 ERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPS-SIECLTDLVELDLRDCK-------------- 727 (1243)
Q Consensus 663 ~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~-------------- 727 (1243)
+.|.+.-|...-.....+..|++|.. |.+.+|.+..++. ++..+..++.+.+..|.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~l---------LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSL---------LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcch---------hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 88888776554444555566665544 4444444444444 33444444444443332
Q ss_pred -----------------------------------------------cccccc-ccccccCccceeecccccCcCcCchh
Q 000874 728 -----------------------------------------------RLKRIS-TRFCKLKSLVKLCLDDCLNLERFPEI 759 (1243)
Q Consensus 728 -----------------------------------------------~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~ 759 (1243)
.....| ..|..|++|++|+|++|.+...-+..
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 111111 13667889999999999888888888
Q ss_pred hhcCCcccEeeccccCccccCcc-cccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCc
Q 000874 760 LEEMEHLKRIYLERTAITELPSS-FENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAIS 824 (1243)
Q Consensus 760 l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~ 824 (1243)
|++...+++|.|..|++..+... |.++.+|+.|+|.+|.++...|..|..+.+|..|.+-.|.+.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999999999998877654 788899999999999998888888999999999988777553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=4.1e-17 Score=201.31 Aligned_cols=246 Identities=20% Similarity=0.316 Sum_probs=124.6
Q ss_pred CCceEEEecCCCCCCCCCCCcccccceecccccccccccccccccccccccccCCCcccccCCC-CCCCCCccEEeccCC
Q 000874 592 KNLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPD-LSEIPNLERIYLSNC 670 (1243)
Q Consensus 592 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~ 670 (1243)
.+...|+++++.++++|..+ +++|+.|+|++|+|+.+|..+. .+|++|+|++|++. .+|. + .++|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence 45566777777777777654 3567777777777777765443 36666666666543 2331 2 134555565555
Q ss_pred cCCCcCCCcccCCCCccccccccccceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccc
Q 000874 671 TNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDC 750 (1243)
Q Consensus 671 ~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~ 750 (1243)
.. ..+|..+. .+|+.|++++|.++.+|..+. ++|+.|+|++|.+. .+|.
T Consensus 252 ~L-~~LP~~l~-----------s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~---------------- 300 (754)
T PRK15370 252 RI-TELPERLP-----------SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPA---------------- 300 (754)
T ss_pred cc-CcCChhHh-----------CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcc----------------
Confidence 32 23333221 123334444444444444332 24444444444322 1222
Q ss_pred cCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccc
Q 000874 751 LNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSV 830 (1243)
Q Consensus 751 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~ 830 (1243)
.+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.+..+|..+
T Consensus 301 --------~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 301 --------HLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred --------cch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh
Confidence 111 234555555555555543321 345555555544322 333221 34455555554444433221
Q ss_pred cCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccchhc----cCCCC
Q 000874 831 ADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPASI----KQLSQ 906 (1243)
Q Consensus 831 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~ 906 (1243)
.++|+.|+|++|+++.+|..+. .+|+.|++++|+++.+|..+ ..+++
T Consensus 366 ---------------------------p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 366 ---------------------------PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQ 416 (754)
T ss_pred ---------------------------cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCC
Confidence 2356666666666666666543 35667777777776665543 23466
Q ss_pred CCEEeecCCCCC
Q 000874 907 LSSLYLKDCKML 918 (1243)
Q Consensus 907 L~~L~L~~c~~l 918 (1243)
+..|+|.+|+..
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 667777766643
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6.6e-17 Score=199.51 Aligned_cols=245 Identities=21% Similarity=0.303 Sum_probs=121.7
Q ss_pred CccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCcccccccccccCCcceEEecccCcccccccccccccC
Q 000874 661 NLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLK 740 (1243)
Q Consensus 661 ~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 740 (1243)
+...|+++++ .+..+|..+. .+++.|+|++|.|+.+|..+. ++|+.|++++|.+ ..+|..+ ..
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip-----------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l--~~ 241 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP-----------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATL--PD 241 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc-----------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhh--hc
Confidence 4556666664 3334443321 234556666666666665443 3566666666543 2344433 23
Q ss_pred ccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccC
Q 000874 741 SLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVG 820 (1243)
Q Consensus 741 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 820 (1243)
+|+.|+|++|.+. .+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 4555555555443 3343332 345555555555555554332 34555555554332 2333221 2344444544
Q ss_pred CCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccchh
Q 000874 821 SAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPAS 900 (1243)
Q Consensus 821 ~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 900 (1243)
|.+..+|..+ .++|+.|++++|.++.+|..+ +++|+.|+|++|+++.+|..
T Consensus 314 N~Lt~LP~~l---------------------------~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~ 364 (754)
T PRK15370 314 NSLTALPETL---------------------------PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPET 364 (754)
T ss_pred CccccCCccc---------------------------cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChh
Confidence 4444443322 245566666666666555544 25666666666666655544
Q ss_pred ccCCCCCCEEeecCCCCCCcCC-CcCCCCcEEecccCCCCCccCCCcc----cccccccccCCCCCCC
Q 000874 901 IKQLSQLSSLYLKDCKMLQSLP-ELPLCLKYLDLRDCNTLRSLPELPL----CLESLKARNCKGLQSL 963 (1243)
Q Consensus 901 l~~l~~L~~L~L~~c~~l~~lp-~l~~~L~~L~l~~c~~l~~~~~~~~----~l~~L~~l~~~~~~~~ 963 (1243)
+ .++|+.|+|++|... .+| .++.+|+.|++++|.. ..+|..+. .++.+..+++.+|.+.
T Consensus 365 l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 L--PPTITTLDVSRNALT-NLPENLPAALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred h--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 245666666666533 333 3444566666666543 24443222 2244555556666554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=3e-17 Score=175.63 Aligned_cols=376 Identities=21% Similarity=0.227 Sum_probs=227.0
Q ss_pred EEecCCCCCCCCCCCcccccceecccccccccccc-cccccccccccccCCCcccccCC-CCCCCCCccEEeccCCcCCC
Q 000874 597 LHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQIWE-GKKKAFKLKSIDLSHSEHLIRIP-DLSEIPNLERIYLSNCTNLV 674 (1243)
Q Consensus 597 L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~ 674 (1243)
.+-++-.++.+|.+. +..-+++.|..|.|+.+|+ .++.+++|+.||||+|.+...-| .|.++++|..|-+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344555677777766 5577899999999999987 57899999999999999988888 49999999999998876777
Q ss_pred cCCC-cccCCCCccccccccccceecccCCccccccc-ccccCCcceEEecccCcccccccccccccCccceeecccccC
Q 000874 675 HVPA-SIQNFKYLKFPQISGKITRLYLSQSAIEEVPS-SIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLN 752 (1243)
Q Consensus 675 ~~p~-~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 752 (1243)
.+|. .|++|..|+. |.+.-|.+..++. .+..+++|..|.+.+|.+-..--..|..+.+++.+.+..|..
T Consensus 130 ~l~k~~F~gL~slqr---------LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQR---------LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhhHhhhHHHHHH---------HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 7774 4667765544 6777777776654 677788888999988775444444677888888888877652
Q ss_pred c------------CcCchhhhcCCcccEeeccccCccccCcc-c-ccccCCcEEeecCCCCCCcCC-CccCCCCCCcEEE
Q 000874 753 L------------ERFPEILEEMEHLKRIYLERTAITELPSS-F-ENLLGLEFLTVSGCSKLDKLP-DNIGNLKSLDFIA 817 (1243)
Q Consensus 753 ~------------~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l-~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~ 817 (1243)
. ...|..++......-..+.+..+..++.. + ..+.++..=-.+.|......| ..|..|++|++|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 2 22233333333333333333333322221 0 011111111112232233333 2356666666666
Q ss_pred ccCCCCccCC-ccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCC-cchhhcCCCCCCEEeCcCCCCc
Q 000874 818 AVGSAISQLP-SSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTE-IPQDIACLSSLTTLNLSGNNFE 895 (1243)
Q Consensus 818 l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 895 (1243)
+++|.++.+. .++.....++.|.+..|+ +..+....|.++..|+.|+|.+|+++. .|..+..+.+|.+|+|-+|.+.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 6666666553 345556666666666654 444555567788888888888888886 4667778888888888777553
Q ss_pred ------ccchhc-----------cCCCCCCEEeecCCCCCCcC---C---------CcC---CCCcEEecccCCCCCccC
Q 000874 896 ------SLPASI-----------KQLSQLSSLYLKDCKMLQSL---P---------ELP---LCLKYLDLRDCNTLRSLP 943 (1243)
Q Consensus 896 ------~lp~~l-----------~~l~~L~~L~L~~c~~l~~l---p---------~l~---~~L~~L~l~~c~~l~~~~ 943 (1243)
-+-+|+ +....++.+.+++...-..- | .-| +.+....=..|..++.+|
T Consensus 360 CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp 439 (498)
T KOG4237|consen 360 CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLP 439 (498)
T ss_pred CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcC
Confidence 111121 12235666666654432111 1 111 234333333344455555
Q ss_pred CCcccccccccccCCCCCCCCCCChhhhhcchhhhhhccCCCCCcc
Q 000874 944 ELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRS 989 (1243)
Q Consensus 944 ~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~Ls~n~~~~~ 989 (1243)
.... ..-..+.+.+|++.. +|.. .+..+ .++|++|+++..
T Consensus 440 ~~iP--~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~L 479 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSL 479 (498)
T ss_pred CCCC--chhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehh
Confidence 4321 112345566666543 4443 33334 778888887643
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2e-16 Score=150.03 Aligned_cols=165 Identities=30% Similarity=0.424 Sum_probs=129.7
Q ss_pred CCCCCCccEEeccCCcCCCcCCCcccCCCCccccccccccceecccCCcccccccccccCCcceEEecccCccccccccc
Q 000874 656 LSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTR 735 (1243)
Q Consensus 656 l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 735 (1243)
+-.+.+...|.|++| .+..+|..+..|.+|+. |++++|+|+++|.+++.+++|+.|++.-|+ +..+|..
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlev---------ln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprg 97 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEV---------LNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRG 97 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhh---------hhcccchhhhcChhhhhchhhhheecchhh-hhcCccc
Confidence 344445555555554 34445555555554433 666667777889999999999999998765 6678889
Q ss_pred ccccCccceeecccccCcC-cCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCc
Q 000874 736 FCKLKSLVKLCLDDCLNLE-RFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLD 814 (1243)
Q Consensus 736 ~~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 814 (1243)
|+.++.|+.|+|++|+..+ .+|..|-.|+.|+.|+|++|.+.-+|..++++++|+.|.+.+|.. -.+|..++.++.|+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLR 176 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHH
Confidence 9999999999999887764 678888888999999999999999999999999999999998864 45788899999999
Q ss_pred EEEccCCCCccCCccccC
Q 000874 815 FIAAVGSAISQLPSSVAD 832 (1243)
Q Consensus 815 ~L~l~~~~i~~l~~~~~~ 832 (1243)
+|.+.+|.+.-+|+.+++
T Consensus 177 elhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHhcccceeeecChhhhh
Confidence 999999999888876554
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=9.8e-16 Score=145.40 Aligned_cols=159 Identities=22% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCCCCCcccccceecccccccccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCcccCCC
Q 000874 605 RTLPSNFKPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFK 684 (1243)
Q Consensus 605 ~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~ 684 (1243)
..+|..|.+.++..|.|++|+++.+|..+..+.+|+.|++++|++....+.++.++.|+.|+++-| .+..
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~--------- 93 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNI--------- 93 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhc---------
Confidence 345555666666666666666666666666666666666666665554445666666666665543 2232
Q ss_pred CccccccccccceecccCCcccccccccccCCcceEEecccCcccc-cccccccccCccceeecccccCcCcCchhhhcC
Q 000874 685 YLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLK-RISTRFCKLKSLVKLCLDDCLNLERFPEILEEM 763 (1243)
Q Consensus 685 ~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l 763 (1243)
+|..++.++.|+.|||.+|.... .+|..|..+..|+.|+|++|.+ +.+|..++++
T Consensus 94 -----------------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~l 149 (264)
T KOG0617|consen 94 -----------------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKL 149 (264)
T ss_pred -----------------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhh
Confidence 33333334444444444333222 2344444444444444444322 3334444444
Q ss_pred CcccEeeccccCccccCcccccccCCcEEeecCC
Q 000874 764 EHLKRIYLERTAITELPSSFENLLGLEFLTVSGC 797 (1243)
Q Consensus 764 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~ 797 (1243)
++|+.|.+..|.+-++|..++.++.|++|++.+|
T Consensus 150 t~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 150 TNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 4444444444444444444444444444444444
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=8.5e-15 Score=168.86 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred ccccccCCcceEEecccCcccccccccccccCc---cceeecccccCcC----cCchhhhcC-CcccEeeccccCcc---
Q 000874 709 PSSIECLTDLVELDLRDCKRLKRISTRFCKLKS---LVKLCLDDCLNLE----RFPEILEEM-EHLKRIYLERTAIT--- 777 (1243)
Q Consensus 709 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~L~~n~l~--- 777 (1243)
+..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344445666666666666655444444433333 6666666665442 122333444 56666666666655
Q ss_pred --ccCcccccccCCcEEeecCCCCCC----cCCCccCCCCCCcEEEccCCCCc
Q 000874 778 --ELPSSFENLLGLEFLTVSGCSKLD----KLPDNIGNLKSLDFIAAVGSAIS 824 (1243)
Q Consensus 778 --~lp~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~i~ 824 (1243)
.++..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 233334555566666666665442 12223334455666666655543
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=6.4e-14 Score=161.59 Aligned_cols=197 Identities=21% Similarity=0.213 Sum_probs=115.1
Q ss_pred ecccCCccc--ccccccccCCcceEEecccCccccc----ccccccccCccceeecccccCcC------cCchhhhcCCc
Q 000874 698 LYLSQSAIE--EVPSSIECLTDLVELDLRDCKRLKR----ISTRFCKLKSLVKLCLDDCLNLE------RFPEILEEMEH 765 (1243)
Q Consensus 698 L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~L~~~~~~~------~~p~~l~~l~~ 765 (1243)
|+|..+.++ ..+..+..+.+|+.|++++|..... ++..+...++|++|+++++.... .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666664 3444556677799999999886332 45556677889999998876552 23456667778
Q ss_pred ccEeeccccCcc-ccCcccccccC---CcEEeecCCCCCC----cCCCccCCC-CCCcEEEccCCCCc-----cCCcccc
Q 000874 766 LKRIYLERTAIT-ELPSSFENLLG---LEFLTVSGCSKLD----KLPDNIGNL-KSLDFIAAVGSAIS-----QLPSSVA 831 (1243)
Q Consensus 766 L~~L~L~~n~l~-~lp~~l~~l~~---L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~l~~~~i~-----~l~~~~~ 831 (1243)
|+.|++++|.+. ..+..+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|.+. .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 888888888776 33333444443 8888888877652 222344555 77777777777766 2233334
Q ss_pred CCCCCcEEEeccCCCCCC----CChhhccCCCCCcEEEeccCCCCC-----cchhhcCCCCCCEEeCcCCCCc
Q 000874 832 DSNVLRMLFFCRCRRLLS----LPRLLLSGLSSLKFLYISDCAVTE-----IPQDIACLSSLTTLNLSGNNFE 895 (1243)
Q Consensus 832 ~l~~L~~L~l~~~~~l~~----l~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 895 (1243)
.++.|+.|++++|..... ++. .+..+++|+.|++++|.+.+ ++..+..+++|+.|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 445555555555542211 111 12233455555555555542 2233444555555555555554
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.32 E-value=9.9e-13 Score=122.93 Aligned_cols=91 Identities=31% Similarity=0.584 Sum_probs=76.7
Q ss_pred EEEccccccccCchHHHHHHHHhhcCCceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCcccchhhHHHHHHHHH
Q 000874 11 VFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWCLNELVKILE 90 (1243)
Q Consensus 11 vF~sf~g~d~r~~f~~~L~~~L~~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~s~wcl~el~~i~~ 90 (1243)
|||||+++| +.|+.+|.+.| ++.|+++|.|. ++..|+.+..++.++|++|...|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L-~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERL-ESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHH-HHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH-
T ss_pred eEEEecCCc--HHHHHHHHHHH-hhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH-
Confidence 899999999 77999999999 99999999997 89999999999999999999999999999999999999998883
Q ss_pred hHhcCCCEEEeEEEEeCcchh
Q 000874 91 CKNTNGQIVIPVFYNVSPSDV 111 (1243)
Q Consensus 91 ~~~~~~~~v~Pvfy~v~ps~v 111 (1243)
+.++.|+||. +++.++
T Consensus 76 ---~~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 76 ---KRGKPIIPVR--LDPCEL 91 (102)
T ss_dssp ---CTSESEEEEE--CSGGGS
T ss_pred ---HCCCEEEEEE--ECCcCC
Confidence 3455799997 444433
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=5e-10 Score=148.35 Aligned_cols=297 Identities=14% Similarity=0.133 Sum_probs=179.8
Q ss_pred cCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 180 VSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
.+|.....+|-|..-++.+. .. ...+++.|.|++|.||||++..+..+ +..++|+.. .... .+...
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~----~~--~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l-~~~d---~~~~~ 73 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLS----GA--NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSL-DESD---NQPER 73 (903)
T ss_pred CCCCCccccCcchHHHHHHh----cc--cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEec-Cccc---CCHHH
Confidence 35566678888886555443 22 46789999999999999999998753 336788853 2211 33344
Q ss_pred HHHHHHHhhhccccc----c------cC-CCcc---HHHHHhhc--CceEEEEEecCCChhh---hHHHhcCCCCCCCCC
Q 000874 260 LQKQMLSTILSEKLE----V------AG-PNIP---QFTKERVR--RMKVLIVLDDVNKVGQ---LEGLIGGLDQYGPGS 320 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~----~------~~-~~~~---~~l~~~L~--~kr~LlVLDdv~~~~~---~~~l~~~~~~~~~gs 320 (1243)
+...++..+...... . .+ .... ..+-..+. +.+++|||||+...+. .+.+...+....++.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 555555555321111 0 00 1111 11222222 6789999999966431 122222222235667
Q ss_pred eEEEEecccchhcc--cCCCcceEEecC----CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhh
Q 000874 321 RIVVTTRDKGVLEK--FGVEEEKIYGVN----GLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGS 394 (1243)
Q Consensus 321 rIIiTTR~~~v~~~--~~~~~~~~~~v~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~ 394 (1243)
++|||||...-... .... ....++. +|+.+|+.+||....... --.+.+.++.+.++|.|+++..++.
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred EEEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHH
Confidence 89899998432211 1111 1345566 899999999998764221 1234467899999999999999887
Q ss_pred hhCCCCHHHHHHHHHHHhhccCcchhhhHhHHhh-ccccCchhhhhhhheeccccCCCCHHHHHHHHhh-cccchhhhcc
Q 000874 395 SLCLKRKSHWENVLDDLNRICESEIHDIYDILKI-SFNELIPREKSMFLDIACFFEGEDKDILMRILDD-SESYALGVLI 472 (1243)
Q Consensus 395 ~L~~~~~~~w~~~l~~l~~~~~~~i~~v~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~-~~~~~~~~L~ 472 (1243)
.+...... .......+...+...+ ...+.- -++.||++.++.++.+|+++ .+..+....+... .....+..|.
T Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~ 302 (903)
T PRK04841 228 SARQNNSS-LHDSARRLAGINASHL---SDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELE 302 (903)
T ss_pred HHhhCCCc-hhhhhHhhcCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHH
Confidence 76543210 0111111111111222 444333 37899999999999999986 5555555555443 4566788999
Q ss_pred cccceEEc----CCeEecchhHHHHHHHHhhcc
Q 000874 473 DKSLITIS----HNCLQMHDLLQEMGRQIVRQE 501 (1243)
Q Consensus 473 ~~sLi~~~----~~~~~mHdlv~~~~~~i~~~e 501 (1243)
+.+++... ...|.+|++++++.+.....+
T Consensus 303 ~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 303 RQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99996532 237999999999999876443
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=2.7e-11 Score=152.46 Aligned_cols=254 Identities=26% Similarity=0.340 Sum_probs=171.5
Q ss_pred cceecccCCcccccccccccCCcceEEecccCcc-ccccc-ccccccCccceeecccccCcCcCchhhhcCCcccEeecc
Q 000874 695 ITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKR-LKRIS-TRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLE 772 (1243)
Q Consensus 695 L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~-l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 772 (1243)
.+...+-+|.+..++....+ ++|++|-+.+|.. +..++ ..|..++.|+.|+|++|.....+|..++.+-+|++|+++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 34455555555566555433 4788888888863 33343 346779999999999999999999999999999999999
Q ss_pred ccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccC---CccccCCCCCcEEEeccCCCCCC
Q 000874 773 RTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQL---PSSVADSNVLRMLFFCRCRRLLS 849 (1243)
Q Consensus 773 ~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~l~~ 849 (1243)
++.+..+|.++++|..|.+|++..+..+..+|.....|++|++|.+.......- -..+..+.+|+.+....+.. ..
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~ 682 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL 682 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh
Confidence 999999999999999999999999888877777777799999999877652211 12234445555555543332 00
Q ss_pred CChhhccCCCCC----cEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccch-h-----cc-CCCCCCEEeecCCCCC
Q 000874 850 LPRLLLSGLSSL----KFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPA-S-----IK-QLSQLSSLYLKDCKML 918 (1243)
Q Consensus 850 l~~~~~~~l~~L----~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~-~l~~L~~L~L~~c~~l 918 (1243)
+. .+..++.| +.+.+.+|.....+..+..+.+|+.|.+.++.+..... . .. .+++|..+.+.+|...
T Consensus 683 ~e--~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 683 LE--DLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred Hh--hhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 00 11222222 23343445555566677788888888888887763321 1 11 1456777777777766
Q ss_pred CcCC--CcCCCCcEEecccCCCCCccCCCccccccc
Q 000874 919 QSLP--ELPLCLKYLDLRDCNTLRSLPELPLCLESL 952 (1243)
Q Consensus 919 ~~lp--~l~~~L~~L~l~~c~~l~~~~~~~~~l~~L 952 (1243)
..+. ..+++|+.|.+..|+.++.+......+..+
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 6655 467889999999998887665544433333
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=4e-11 Score=134.97 Aligned_cols=189 Identities=21% Similarity=0.256 Sum_probs=125.1
Q ss_pred EEecCCCCCCCCCCC---cccccceecccccccccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCC
Q 000874 597 LHWYKYPLRTLPSNF---KPKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNL 673 (1243)
Q Consensus 597 L~l~~~~l~~lp~~~---~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l 673 (1243)
|.|++-.++..|..- .+.--+..+|+.|++..+|...+.+..|..+.|.+|.+....+.+.++..|.+|+|+.| .+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-ql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hh
Confidence 334444444444332 34445566777777777777777777777777777776666666777777777777765 34
Q ss_pred CcCCCcccCCCCccccccccccceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCc
Q 000874 674 VHVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNL 753 (1243)
Q Consensus 674 ~~~p~~i~~L~~L~~l~~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~ 753 (1243)
..+|..++.|. |+.|-+++|+++.+|..++.+.+|..|+.+.|.+ ..+|..++.+.+|+.|.+..|...
T Consensus 134 S~lp~~lC~lp----------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 134 SHLPDGLCDLP----------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred hcCChhhhcCc----------ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh
Confidence 55666665553 5557777777777777777777777777777663 445556777777777777776543
Q ss_pred CcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCC
Q 000874 754 ERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSK 799 (1243)
Q Consensus 754 ~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 799 (1243)
.+|+.+..+ .|..|+++.|++..+|-.|.+++.|++|-|.+|++
T Consensus 203 -~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 203 -DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 445555544 37777777777777777777777777777777654
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.98 E-value=2.6e-08 Score=118.28 Aligned_cols=250 Identities=15% Similarity=0.133 Sum_probs=147.3
Q ss_pred CCCCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLE 258 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~ 258 (1243)
...++.++||+.++++|...+...- +...+.+.|+|++|+|||++++.+++++...... .+++... .. .+..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~----~~-~~~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ----ID-RTRY 100 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC----cC-CCHH
Confidence 3456789999999999999884421 1344567899999999999999999987665422 3333211 11 3455
Q ss_pred HHHHHHHHhhhcccccccC---CCccHHHHHhhc--CceEEEEEecCCChh------hhHHHhcCCCCCCCCCe--EEEE
Q 000874 259 HLQKQMLSTILSEKLEVAG---PNIPQFTKERVR--RMKVLIVLDDVNKVG------QLEGLIGGLDQYGPGSR--IVVT 325 (1243)
Q Consensus 259 ~l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IIiT 325 (1243)
.+...++.++........+ .+..+.+.+.+. ++.++||||+++... .+..+...... .++++ +|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 7777788777653222111 122344455554 456899999998753 24444433222 12333 6666
Q ss_pred ecccchhcccC-----CCcceEEecCCCCHHHHHHHHHHhhc---CCCCCCch-HHHHHHHHHHHhCCCchhHHHHhhhh
Q 000874 326 TRDKGVLEKFG-----VEEEKIYGVNGLEFDEAFELFCNFAF---EENHCPED-LNWHSRRVVWYATSNPLVLKVLGSSL 396 (1243)
Q Consensus 326 TR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~~-~~~l~~~i~~~~~glPLal~~~g~~L 396 (1243)
+.+..+..... .-....+.+++++.++..+++..++- ......++ .+.+++......|..+.|+.++-.+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66654433221 00114678999999999999987752 22222222 23333333333455777776654321
Q ss_pred -----CCC---CHHHHHHHHHHHhhccCcchhhhHhHHhhccccCchhhhhhhheeccc
Q 000874 397 -----CLK---RKSHWENVLDDLNRICESEIHDIYDILKISFNELIPREKSMFLDIACF 447 (1243)
Q Consensus 397 -----~~~---~~~~w~~~l~~l~~~~~~~i~~v~~~l~~sy~~L~~~~k~~fl~~a~f 447 (1243)
.+. +.+....+++... .....-.+..||.++|..+..++..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 4556666665441 2223345778999998888766644
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-10 Score=127.18 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=60.3
Q ss_pred cCCcceEEecccCccccccc--ccccccCccceeecccccCcC--cCchhhhcCCcccEeeccccCccccCcc--ccccc
Q 000874 714 CLTDLVELDLRDCKRLKRIS--TRFCKLKSLVKLCLDDCLNLE--RFPEILEEMEHLKRIYLERTAITELPSS--FENLL 787 (1243)
Q Consensus 714 ~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~l~~lp~~--l~~l~ 787 (1243)
++.+|+...|.+|.. ...+ .....+++++.|+|+.|-+.. .+......+++|+.|+|+.|.+...-++ -..++
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456666666666542 2222 123456777777777765443 2334566677777777777766644333 13456
Q ss_pred CCcEEeecCCCCCC-cCCCccCCCCCCcEEEccCC
Q 000874 788 GLEFLTVSGCSKLD-KLPDNIGNLKSLDFIAAVGS 821 (1243)
Q Consensus 788 ~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~ 821 (1243)
+|+.|.|++|.+.. .+...+..+|+|+.|.+..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 77777777776552 12222344566666666665
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=1.3e-10 Score=130.95 Aligned_cols=190 Identities=28% Similarity=0.365 Sum_probs=101.4
Q ss_pred EEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecCCCC
Q 000874 720 ELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSK 799 (1243)
Q Consensus 720 ~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 799 (1243)
..||+.|+ ...+|..++.+-.|+.|.|..|.+ ..+|+.+.++..|.+|+|+.|.+..+|..+..|+ |+.|-+++| .
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-K 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-c
Confidence 34444433 223344444444444444444332 2344455555555555555555555555554443 455555543 3
Q ss_pred CCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhc
Q 000874 800 LDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIA 879 (1243)
Q Consensus 800 ~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~ 879 (1243)
++.+|+.++.++.|..|+.+.|.+..+|+.++.+.+|+.|.+..|... .+|.. +. .-.|..||++.|++..+|-.+.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCceeecchhhh
Confidence 445555555555666666666666666655555555555554444422 22221 22 2246677777777777777777
Q ss_pred CCCCCCEEeCcCCCCcccchhcc---CCCCCCEEeecCCC
Q 000874 880 CLSSLTTLNLSGNNFESLPASIK---QLSQLSSLYLKDCK 916 (1243)
Q Consensus 880 ~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~c~ 916 (1243)
.|..|++|.|.+|.+.+-|..+. ...=-++|+..-|+
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 77777777777777777666442 22234566666664
No 35
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=6.7e-09 Score=106.95 Aligned_cols=142 Identities=19% Similarity=0.337 Sum_probs=86.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhccc------CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHH
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFT 284 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l 284 (1243)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..... .....+...+.......... ....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~~~~~~~~~~-----~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDS-NNSRSLADLLFDQLPESIAP-----IEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhc-cccchHHHHHHHhhccchhh-----hHHHH
Confidence 5899999999999999999999776554 233343 33332222 11123444443333221111 11111
Q ss_pred H-HhhcCceEEEEEecCCChhh---------hHHHhc-CCCC-CCCCCeEEEEecccchhc---ccCCCcceEEecCCCC
Q 000874 285 K-ERVRRMKVLIVLDDVNKVGQ---------LEGLIG-GLDQ-YGPGSRIVVTTRDKGVLE---KFGVEEEKIYGVNGLE 349 (1243)
Q Consensus 285 ~-~~L~~kr~LlVLDdv~~~~~---------~~~l~~-~~~~-~~~gsrIIiTTR~~~v~~---~~~~~~~~~~~v~~L~ 349 (1243)
. -..+.++++||||++|+... +..++. .+.. ..++.+||||+|...... ..... ..+++.+|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCC
Confidence 1 12257899999999976543 122222 1221 257899999999887622 22222 589999999
Q ss_pred HHHHHHHHHHhh
Q 000874 350 FDEAFELFCNFA 361 (1243)
Q Consensus 350 ~~ea~~Lf~~~a 361 (1243)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997763
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.4e-09 Score=129.08 Aligned_cols=197 Identities=30% Similarity=0.408 Sum_probs=129.5
Q ss_pred EEecccCcccccccccccccCccceeecccccCcCcCchhhhcCC-cccEeeccccCccccCcccccccCCcEEeecCCC
Q 000874 720 ELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEME-HLKRIYLERTAITELPSSFENLLGLEFLTVSGCS 798 (1243)
Q Consensus 720 ~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~ 798 (1243)
.|++..+........ +..++.++.|++.++.... ++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 344544443222222 3334556666665544332 333344443 6777777777777776667777777777777765
Q ss_pred CCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhh
Q 000874 799 KLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDI 878 (1243)
Q Consensus 799 ~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l 878 (1243)
+ ..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.++++........ +..+.++..|.+.+|++..++..+
T Consensus 175 l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 175 L-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred h-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccchh
Confidence 4 3344444467777777778887777777666666677777777753333332 566777777778888887777778
Q ss_pred cCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCC
Q 000874 879 ACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 879 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
+.+++|+.|++++|.++.++. +..+.+|+.|+++++......|
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 888888888888888888876 7778888888888887666555
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=7.9e-09 Score=117.91 Aligned_cols=271 Identities=15% Similarity=0.119 Sum_probs=146.6
Q ss_pred CCcccchhhHHhHHHhhccCC--CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQ 263 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 263 (1243)
..|||++..+++|..++.... ....+.+.++|++|+|||+||+++++++...+. +. ..... .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~-~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---IT-SGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Ee-ccchh----cCchhHHH-
Confidence 469999999999998886421 133556889999999999999999997754321 11 10000 11111111
Q ss_pred HHHhhhcccc-cccC-----CCccHHHHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhcccCC
Q 000874 264 MLSTILSEKL-EVAG-----PNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGV 337 (1243)
Q Consensus 264 ll~~l~~~~~-~~~~-----~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 337 (1243)
.+..+..... -+|. ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111111110 0000 00112233333334444455444333332211 1234556667776554433111
Q ss_pred CcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCCCHHHHHHHHH-HHhhccC
Q 000874 338 EEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLD-DLNRICE 416 (1243)
Q Consensus 338 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~-~l~~~~~ 416 (1243)
.-...+++++++.++..+++...+..... .-..+....|++.|+|.|-.+..++..+ |..+.. .-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 11157899999999999999988743221 2224567889999999997665554432 211100 0000111
Q ss_pred cchhhhHhHHhhccccCchhhhhhhh-eeccccCC-CCHHHHHHHHhh---cccchhh-hcccccceEEc
Q 000874 417 SEIHDIYDILKISFNELIPREKSMFL-DIACFFEG-EDKDILMRILDD---SESYALG-VLIDKSLITIS 480 (1243)
Q Consensus 417 ~~i~~v~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~l~~---~~~~~~~-~L~~~sLi~~~ 480 (1243)
..+......+...|.++++.++..+. .++.+..+ ...+.+...+.. ..+..++ .|++++||...
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 11122233366778899998888776 44555432 445556666554 3444466 59999999654
No 38
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=1.4e-09 Score=119.07 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=99.4
Q ss_pred cccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH------H
Q 000874 188 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL------Q 261 (1243)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l------~ 261 (1243)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..+..-..++|+........ ..+..+ .
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHH
Confidence 799999999999999763 35788999999999999999999987543334445432221110 011111 1
Q ss_pred HHHHHhhhccccc-----------ccCCCccHHHHHhhc--CceEEEEEecCCChh-h----------hHHHhcCCCCCC
Q 000874 262 KQMLSTILSEKLE-----------VAGPNIPQFTKERVR--RMKVLIVLDDVNKVG-Q----------LEGLIGGLDQYG 317 (1243)
Q Consensus 262 ~~ll~~l~~~~~~-----------~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-~----------~~~l~~~~~~~~ 317 (1243)
+.+...+...... .........+.+.+. +++++||+||++... . +..+........
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1111111111000 011112222333333 345999999997665 1 222222212122
Q ss_pred CCCeEEEEecccchhcc----c--CCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 000874 318 PGSRIVVTTRDKGVLEK----F--GVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKV 391 (1243)
Q Consensus 318 ~gsrIIiTTR~~~v~~~----~--~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~ 391 (1243)
+. .+|+++-...+... . -......+.+++|+.+++++++...+-.. ..-+.-.+..++|...+||+|..|..
T Consensus 156 ~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred Cc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 33 44455444433322 0 01111459999999999999998865332 11012344568999999999998764
No 39
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=5.1e-08 Score=109.17 Aligned_cols=181 Identities=15% Similarity=0.101 Sum_probs=106.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh-
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER- 287 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 287 (1243)
..+++.|+|++|+||||+++.+++.....=-..+++.. .. .+..++...+...++......+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876532111122211 11 345567777776664432111111111222222
Q ss_pred ----hcCceEEEEEecCCChh--hhHHHhcCCC---CCCCCCeEEEEecccchhcccC--------CCcceEEecCCCCH
Q 000874 288 ----VRRMKVLIVLDDVNKVG--QLEGLIGGLD---QYGPGSRIVVTTRDKGVLEKFG--------VEEEKIYGVNGLEF 350 (1243)
Q Consensus 288 ----L~~kr~LlVLDdv~~~~--~~~~l~~~~~---~~~~gsrIIiTTR~~~v~~~~~--------~~~~~~~~v~~L~~ 350 (1243)
..+++.+||+||++... .++.+..... .......|++|.... +..... ......+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 25788999999998764 3444432111 112223445555432 211111 00014688999999
Q ss_pred HHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhCCCchhHHHHhhhh
Q 000874 351 DEAFELFCNFAFEEN--HCPEDLNWHSRRVVWYATSNPLVLKVLGSSL 396 (1243)
Q Consensus 351 ~ea~~Lf~~~af~~~--~~~~~~~~l~~~i~~~~~glPLal~~~g~~L 396 (1243)
+|..+++...+-... ....-..+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887653221 1112234678899999999999999888765
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=4.6e-10 Score=116.52 Aligned_cols=203 Identities=21% Similarity=0.195 Sum_probs=132.3
Q ss_pred ccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEeecC-CCCCCcCCCccCCC
Q 000874 732 ISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTVSG-CSKLDKLPDNIGNL 810 (1243)
Q Consensus 732 lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-~~~~~~lp~~l~~l 810 (1243)
+|-.+.-+.+|..+.++.|.-... -.....-+.|.++...++.+...|.-+ ....+..+.-.. ....+.....+...
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecchH
Confidence 344445567777777777653322 122222356777777776665444311 111111111110 00112222334445
Q ss_pred CCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCc
Q 000874 811 KSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLS 890 (1243)
Q Consensus 811 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls 890 (1243)
+.|+++++++|.|+.+..++.-.|.++.|+++.|.... +. .+..+++|+.|+||+|.++++..+-..+.+.++|+|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 67888999999999888888888889999998887433 22 2567899999999999999888877788899999999
Q ss_pred CCCCcccchhccCCCCCCEEeecCCCCCC--cCC--CcCCCCcEEecccCCCCC
Q 000874 891 GNNFESLPASIKQLSQLSSLYLKDCKMLQ--SLP--ELPLCLKYLDLRDCNTLR 940 (1243)
Q Consensus 891 ~n~l~~lp~~l~~l~~L~~L~L~~c~~l~--~lp--~l~~~L~~L~l~~c~~l~ 940 (1243)
+|.+.++. ++..|.+|..||+++|++-+ ... .-+|+|+.|.+.+|+...
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99998887 78889999999999987522 111 234577777777776544
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=1.5e-07 Score=110.54 Aligned_cols=249 Identities=16% Similarity=0.121 Sum_probs=140.9
Q ss_pred CCCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccC------ceEEEeeccccccCCC
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE------GRCFMSDVRRNSETGG 255 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~~ 255 (1243)
..++.++||+.++++|...|.... +...+.+.|+|++|+|||++++++++.+..... ..+|+... .. .
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~-~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----IL-D 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CC-C
Confidence 345689999999999999886421 134467899999999999999999997654322 12343321 11 3
Q ss_pred ChHHHHHHHHHhhhc--ccccccCC---CccHHHHHhh--cCceEEEEEecCCChh-----hhHHHhcCCCC-CC--CCC
Q 000874 256 GLEHLQKQMLSTILS--EKLEVAGP---NIPQFTKERV--RRMKVLIVLDDVNKVG-----QLEGLIGGLDQ-YG--PGS 320 (1243)
Q Consensus 256 ~l~~l~~~ll~~l~~--~~~~~~~~---~~~~~l~~~L--~~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~--~gs 320 (1243)
....+...++.++.. ...+..+. +....+.+.+ .+++++||||+++... .+..+...... .. ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 445677777777642 11111111 1223344444 3568999999998772 13333322111 11 233
Q ss_pred eEEEEecccchhcccC-----CCcceEEecCCCCHHHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHhCCCch-hHHH
Q 000874 321 RIVVTTRDKGVLEKFG-----VEEEKIYGVNGLEFDEAFELFCNFAF---EENHCPEDLNWHSRRVVWYATSNPL-VLKV 391 (1243)
Q Consensus 321 rIIiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~glPL-al~~ 391 (1243)
.+|.+|........+. .-....+.+++.+.++..+++..++- ......++..+.+.+++....|.|- |+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555555443322111 00115688999999999999988763 2222334444455667777778874 3333
Q ss_pred Hhhhh----C-C---CCHHHHHHHHHHHhhccCcchhhhHhHHhhccccCchhhhhhhheecc
Q 000874 392 LGSSL----C-L---KRKSHWENVLDDLNRICESEIHDIYDILKISFNELIPREKSMFLDIAC 446 (1243)
Q Consensus 392 ~g~~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~v~~~l~~sy~~L~~~~k~~fl~~a~ 446 (1243)
+-... . + .+.+..+.+.+.+. .....-+..+||.++|.++..++.
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22211 1 1 14455555554432 122233556888888877665553
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=4.4e-09 Score=124.91 Aligned_cols=126 Identities=31% Similarity=0.407 Sum_probs=51.7
Q ss_pred ecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc
Q 000874 698 LYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT 777 (1243)
Q Consensus 698 L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 777 (1243)
|++++|.+..+|..++.+++|+.|++++|+.. .+|...+.+++|+.|++++|.+ ..+|...+.+..|++|.+++|.+.
T Consensus 145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred ccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce
Confidence 44444444444444444555555555544422 2222222344444444444332 222332233333444444444444
Q ss_pred ccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccC
Q 000874 778 ELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQL 826 (1243)
Q Consensus 778 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l 826 (1243)
..+..+.++.++..|.+.+|.. ..++..++.+++|+.|++++|.+..+
T Consensus 223 ~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 223 ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ecchhhhhcccccccccCCcee-eeccchhccccccceecccccccccc
Confidence 4444444444444444333322 11233344444444444444444443
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=1.7e-08 Score=115.88 Aligned_cols=275 Identities=16% Similarity=0.112 Sum_probs=147.1
Q ss_pred CCCCCcccchhhHHhHHHhhccC--CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
....+|+|++..++.+..++... .....+.+.|+|++|+||||+|+.+++.....+. +.. . ... .....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~-~~~---~~~~~- 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-G-PAL---EKPGD- 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-c-ccc---cChHH-
Confidence 45678999999999998887642 1134567889999999999999999998754321 111 0 000 11111
Q ss_pred HHHHHHhhhcccc-cccCC-----CccHHHHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhcc
Q 000874 261 QKQMLSTILSEKL-EVAGP-----NIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEK 334 (1243)
Q Consensus 261 ~~~ll~~l~~~~~-~~~~~-----~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 334 (1243)
...++..+..... -+|.. ...+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHH
Confidence 1112221111000 00000 0011122222233333333332222211100 1223456667775544332
Q ss_pred cCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCCCHHHHHHHHHHHhhc
Q 000874 335 FGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLDDLNRI 414 (1243)
Q Consensus 335 ~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~ 414 (1243)
....-...++++.++.++..+++...+..... .-..+.+..|++.|+|.|-.+..+...+ ..|.... .-...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCCC
Confidence 21100157899999999999999988754322 2234568899999999996555444322 1121111 00111
Q ss_pred cCcchhhhHhHHhhccccCchhhhhhhh-eeccccCC-CCHHHHHHHHhh---cccchhh-hcccccceEEc
Q 000874 415 CESEIHDIYDILKISFNELIPREKSMFL-DIACFFEG-EDKDILMRILDD---SESYALG-VLIDKSLITIS 480 (1243)
Q Consensus 415 ~~~~i~~v~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~l~~---~~~~~~~-~L~~~sLi~~~ 480 (1243)
....+....+.+...+.+|++..+..+. .+..|..+ ...+.+...+.. ..+..++ .|++.+||+..
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 1122233345667788899998888886 55555443 455666666654 3333455 78999999654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.5e-10 Score=120.66 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=118.9
Q ss_pred cccCccceeecccccCcCcCc-hhhhcCCcccEeeccccCccc---cCcccccccCCcEEeecCCCCCCcCCC-ccCCCC
Q 000874 737 CKLKSLVKLCLDDCLNLERFP-EILEEMEHLKRIYLERTAITE---LPSSFENLLGLEFLTVSGCSKLDKLPD-NIGNLK 811 (1243)
Q Consensus 737 ~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~ 811 (1243)
.++++|+...|.++....... .....+++++.|+|+.|-+.. +-.....|++|+.|+|+.|.+.-.... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 468889999998876432221 467789999999999987763 334467899999999999876532221 122567
Q ss_pred CCcEEEccCCCCc--cCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcc--hhhcCCCCCCEE
Q 000874 812 SLDFIAAVGSAIS--QLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIP--QDIACLSSLTTL 887 (1243)
Q Consensus 812 ~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L 887 (1243)
+|+.|.++.|.++ ++......+|+|..|.+..|..+..... ....+..|++|+|++|++.+++ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888888888776 2333345567777777777753221111 2334567777788777777665 456677777777
Q ss_pred eCcCCCCccc--chh-----ccCCCCCCEEeecCCCC
Q 000874 888 NLSGNNFESL--PAS-----IKQLSQLSSLYLKDCKM 917 (1243)
Q Consensus 888 ~Ls~n~l~~l--p~~-----l~~l~~L~~L~L~~c~~ 917 (1243)
+++.|.+.++ |+. ...+++|++|++..|+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 7777777633 332 34566777777776664
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=8.4e-10 Score=114.59 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=95.0
Q ss_pred CCcccEeeccccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEec
Q 000874 763 MEHLKRIYLERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFC 842 (1243)
Q Consensus 763 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 842 (1243)
...|++|+|++|.|+.+..+..-+|.++.|++++|.++..- .+..+++|+.|++++|.+..+..+-.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~----------- 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHL----------- 349 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHh-----------
Confidence 45688889999999888888888888899999888776543 37778888888888887776655433
Q ss_pred cCCCCCCCChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccch--hccCCCCCCEEeecCCCCC
Q 000874 843 RCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPA--SIKQLSQLSSLYLKDCKML 918 (1243)
Q Consensus 843 ~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l 918 (1243)
.+-+.+.|.|++|.+.++. .++.+-+|..|++++|+|..+.. +|++||.|++|.|.+|+..
T Consensus 350 --------------KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 350 --------------KLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --------------hhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 3455666666666655543 46677788888888888876544 6788888888888888843
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=5.5e-08 Score=123.52 Aligned_cols=306 Identities=14% Similarity=0.140 Sum_probs=177.7
Q ss_pred CcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe--eccccccCCCChHHHHHHH
Q 000874 187 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS--DVRRNSETGGGLEHLQKQM 264 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~--~~~~~~~~~~~l~~l~~~l 264 (1243)
.++||+.+++.|...+..-......++.+.|..|||||+|+++|...+..++...+--. .......- ..+.+..+.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl-~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPL-SPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCch-HHHHHHHHHH
Confidence 37999999999999887755567789999999999999999999997766522111000 00000000 1122222222
Q ss_pred HHh-------------------hhcccccc----------cC----------CCc--------cHHHHHhh-cCceEEEE
Q 000874 265 LST-------------------ILSEKLEV----------AG----------PNI--------PQFTKERV-RRMKVLIV 296 (1243)
Q Consensus 265 l~~-------------------l~~~~~~~----------~~----------~~~--------~~~l~~~L-~~kr~LlV 296 (1243)
..+ ++...... .+ ... ...+.... +.|+.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 222 22111110 00 000 01111222 35699999
Q ss_pred EecC-CChhh----hHHHhcCCC---CCCCCCeEEEEecccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCC
Q 000874 297 LDDV-NKVGQ----LEGLIGGLD---QYGPGSRIVVTTRDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCP 368 (1243)
Q Consensus 297 LDdv-~~~~~----~~~l~~~~~---~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~ 368 (1243)
+||+ |-+.. ++.+..... ......-.+.|.+..--.-.........+.+.+|+..+...|.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 9999 33322 333333322 000111122233322111111122226899999999999999987753322
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHhhhhCCC-------CHHHHHHHHHHHhhccCcchhhhHhHHhhccccCchhhhhhh
Q 000874 369 EDLNWHSRRVVWYATSNPLVLKVLGSSLCLK-------RKSHWENVLDDLNRICESEIHDIYDILKISFNELIPREKSMF 441 (1243)
Q Consensus 369 ~~~~~l~~~i~~~~~glPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~~~i~~v~~~l~~sy~~L~~~~k~~f 441 (1243)
....+....|+++.+|+|+.+..+-..+... +...|..-...+... +.++.+...+....+.||...|+.+
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~--~~~~~vv~~l~~rl~kL~~~t~~Vl 314 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL--ATTDAVVEFLAARLQKLPGTTREVL 314 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc--hhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 2334568899999999999999988888653 334455444333222 2223345568888999999999999
Q ss_pred heeccccCCCCHHHHHHHHhh----cccchhhhcccccceEEc--------CC---eEecchhHHHHHHHHh
Q 000874 442 LDIACFFEGEDKDILMRILDD----SESYALGVLIDKSLITIS--------HN---CLQMHDLLQEMGRQIV 498 (1243)
Q Consensus 442 l~~a~f~~~~~~~~~~~~l~~----~~~~~~~~L~~~sLi~~~--------~~---~~~mHdlv~~~~~~i~ 498 (1243)
-..||+.+.++.+.+..+.+. .+....+.|....++..+ .. +-..||.+|+.+-...
T Consensus 315 ~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 315 KAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 999999999999988887764 222223334333333211 11 2367888888876554
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.4e-08 Score=102.82 Aligned_cols=130 Identities=26% Similarity=0.370 Sum_probs=41.5
Q ss_pred CccccCcccccccCCcEEeecCCCCCCcCCCccC-CCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChh
Q 000874 775 AITELPSSFENLLGLEFLTVSGCSKLDKLPDNIG-NLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRL 853 (1243)
Q Consensus 775 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~ 853 (1243)
.|...|. +.+..++++|+|++|.+... +.++ .+.+|+.|++++|.+..+.
T Consensus 8 ~i~~~~~-~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------- 58 (175)
T PF14580_consen 8 MIEQIAQ-YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-------------------------- 58 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T--------------------------
T ss_pred ccccccc-cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--------------------------
Confidence 3344433 34444667777777654432 2333 3556666666666665543
Q ss_pred hccCCCCCcEEEeccCCCCCcchhh-cCCCCCCEEeCcCCCCcccch--hccCCCCCCEEeecCCCCCCcCC-------C
Q 000874 854 LLSGLSSLKFLYISDCAVTEIPQDI-ACLSSLTTLNLSGNNFESLPA--SIKQLSQLSSLYLKDCKMLQSLP-------E 923 (1243)
Q Consensus 854 ~~~~l~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp-------~ 923 (1243)
.+..++.|++|++++|.++++...+ ..+++|++|+|++|+|..+.. .+..+++|+.|+|.+||.... + .
T Consensus 59 ~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~ 137 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIY 137 (175)
T ss_dssp T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHH
T ss_pred CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHH
Confidence 1455778888888888888876555 367888888888888775543 456778888888888876433 2 1
Q ss_pred cCCCCcEEecc
Q 000874 924 LPLCLKYLDLR 934 (1243)
Q Consensus 924 l~~~L~~L~l~ 934 (1243)
..|+|+.||-.
T Consensus 138 ~lP~Lk~LD~~ 148 (175)
T PF14580_consen 138 KLPSLKVLDGQ 148 (175)
T ss_dssp H-TT-SEETTE
T ss_pred HcChhheeCCE
Confidence 33556666544
No 48
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=5.1e-07 Score=108.12 Aligned_cols=294 Identities=14% Similarity=0.155 Sum_probs=181.4
Q ss_pred CCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
+|....+.|-|..-++.+.. . .+.|.+.|..++|.|||||+-.... ....=..+.|+...... .+...+
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~----~--~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d----ndp~rF 82 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR----A--NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD----NDPARF 82 (894)
T ss_pred CCCCcccccccHHHHHHHhc----C--CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc----CCHHHH
Confidence 44556677777755554443 2 4789999999999999999999988 34445678888643222 556677
Q ss_pred HHHHHHhhhccccccc-----------CCC---ccHHHHHhhc--CceEEEEEecCCChh------hhHHHhcCCCCCCC
Q 000874 261 QKQMLSTILSEKLEVA-----------GPN---IPQFTKERVR--RMKVLIVLDDVNKVG------QLEGLIGGLDQYGP 318 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~-----------~~~---~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~ 318 (1243)
...++..++.-..... ... +...+...+. .++..+||||..-.. .++.++.. ..+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCC
Confidence 7777777663332210 011 1122222222 458999999974332 24455444 346
Q ss_pred CCeEEEEecccchhcccCCC-cceEEecC----CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 000874 319 GSRIVVTTRDKGVLEKFGVE-EEKIYGVN----GLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLG 393 (1243)
Q Consensus 319 gsrIIiTTR~~~v~~~~~~~-~~~~~~v~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g 393 (1243)
+-..|||||...-+...... .+...++. .++.+|+-++|..... . +-...-++.+.++..|-+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l--~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L--PLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C--CCChHHHHHHHhhcccHHHHHHHHH
Confidence 78999999987543221110 01334443 3789999999987641 1 1122347889999999999998888
Q ss_pred hhhCCC-CHHHHHHHHHHHhhccCcchhhhHh-HHhhccccCchhhhhhhheeccccCCCCHHHHHHHHhh--cccchhh
Q 000874 394 SSLCLK-RKSHWENVLDDLNRICESEIHDIYD-ILKISFNELIPREKSMFLDIACFFEGEDKDILMRILDD--SESYALG 469 (1243)
Q Consensus 394 ~~L~~~-~~~~w~~~l~~l~~~~~~~i~~v~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~--~~~~~~~ 469 (1243)
=.+++. +.+.-...+... ...+ .+ ...--++.||++.|..++-+|++..- . +.+..-+.+ .+...++
T Consensus 235 La~~~~~~~~q~~~~LsG~----~~~l---~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~-~eL~~~Ltg~~ng~amLe 305 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGA----ASHL---SDYLVEEVLDRLPPELRDFLLQTSVLSRF-N-DELCNALTGEENGQAMLE 305 (894)
T ss_pred HHccCCCcHHHHhhhccch----HHHH---HHHHHHHHHhcCCHHHHHHHHHHHhHHHh-h-HHHHHHHhcCCcHHHHHH
Confidence 777633 332222211111 0111 11 11223678999999999999988431 1 122222222 4455588
Q ss_pred hcccccceEEc----CCeEecchhHHHHHHHHhhccc
Q 000874 470 VLIDKSLITIS----HNCLQMHDLLQEMGRQIVRQES 502 (1243)
Q Consensus 470 ~L~~~sLi~~~----~~~~~mHdlv~~~~~~i~~~e~ 502 (1243)
.|..++|+-+. ++.|+.|.++.||-+.-...+.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 89999998754 6789999999999988766543
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=2e-08 Score=101.80 Aligned_cols=128 Identities=22% Similarity=0.313 Sum_probs=51.3
Q ss_pred hcCCcccEeeccccCccccCcccc-cccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 000874 761 EEMEHLKRIYLERTAITELPSSFE-NLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRML 839 (1243)
Q Consensus 761 ~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 839 (1243)
.+..++++|+|++|.|+.+.. ++ .+.+|+.|++++|.+... +.+..++.|+.|++++|.++.+...+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l--------- 83 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGL--------- 83 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH---------
T ss_pred ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccch---------
Confidence 345578999999999998853 55 689999999999987643 35778899999999999988775432
Q ss_pred EeccCCCCCCCChhhccCCCCCcEEEeccCCCCCc--chhhcCCCCCCEEeCcCCCCcccch----hccCCCCCCEEeec
Q 000874 840 FFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEI--PQDIACLSSLTTLNLSGNNFESLPA----SIKQLSQLSSLYLK 913 (1243)
Q Consensus 840 ~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 913 (1243)
...+++|++|+|++|++.++ -..+..+++|+.|+|.+|.++.-+. .+..+|+|+.||-.
T Consensus 84 ---------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 ---------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ---------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ---------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 12467777778888777653 2456778889999999998885543 46778999998865
Q ss_pred CC
Q 000874 914 DC 915 (1243)
Q Consensus 914 ~c 915 (1243)
..
T Consensus 149 ~V 150 (175)
T PF14580_consen 149 DV 150 (175)
T ss_dssp ET
T ss_pred Ec
Confidence 43
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-09 Score=113.70 Aligned_cols=231 Identities=19% Similarity=0.240 Sum_probs=127.2
Q ss_pred cccCCcceEEecccCccccc----ccccccccCccceeeccccc---CcCcCc-------hhhhcCCcccEeeccccCcc
Q 000874 712 IECLTDLVELDLRDCKRLKR----ISTRFCKLKSLVKLCLDDCL---NLERFP-------EILEEMEHLKRIYLERTAIT 777 (1243)
Q Consensus 712 i~~l~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~L~~~~---~~~~~p-------~~l~~l~~L~~L~L~~n~l~ 777 (1243)
+..+..++.|+|++|.+... +...+.+.++|+..++++-- ....+| ..+..+++|++|+||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456667777777665433 22334445566666665421 111222 23344556777777777665
Q ss_pred -c----cCcccccccCCcEEeecCCCCCCcCC-------------CccCCCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 000874 778 -E----LPSSFENLLGLEFLTVSGCSKLDKLP-------------DNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRML 839 (1243)
Q Consensus 778 -~----lp~~l~~l~~L~~L~L~~~~~~~~lp-------------~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 839 (1243)
. +-.-+.++..|+.|.|.+|.+...-- .-.++-+.|+.+...+|.+..-+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~--------- 176 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA--------- 176 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH---------
Confidence 1 11224556677777777765432111 11233344455554444443322110
Q ss_pred EeccCCCCCCCChhhccCCCCCcEEEeccCCCCC-----cchhhcCCCCCCEEeCcCCCCc-----ccchhccCCCCCCE
Q 000874 840 FFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTE-----IPQDIACLSSLTTLNLSGNNFE-----SLPASIKQLSQLSS 909 (1243)
Q Consensus 840 ~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~ 909 (1243)
+ ...+...+.|+.+.++.|.+.. +-..+..+++|+.|||..|.|+ .+...+..+++|+.
T Consensus 177 ----------~-A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 177 ----------L-AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ----------H-HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 0 1134455777777777776652 3455677888888888888776 34445667778888
Q ss_pred EeecCCCCCCc--------CCCcCCCCcEEecccCCCCCcc----CCCcccccccccccCCCCCC
Q 000874 910 LYLKDCKMLQS--------LPELPLCLKYLDLRDCNTLRSL----PELPLCLESLKARNCKGLQS 962 (1243)
Q Consensus 910 L~L~~c~~l~~--------lp~l~~~L~~L~l~~c~~l~~~----~~~~~~l~~L~~l~~~~~~~ 962 (1243)
|++++|..... +....++|+.|.+.+|.....- .......+.|..|++++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888865332 2234567888888887655421 11122355666777777765
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.3e-07 Score=102.06 Aligned_cols=170 Identities=18% Similarity=0.291 Sum_probs=104.4
Q ss_pred CCcccchhhH---HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 186 NGLVGLNSRI---EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
+.+||-+.-+ .-|.+++.. +.+.-...||++|+||||||+.++......|...- ....+++++++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~ 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLRE 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHH
Confidence 4455544333 224445544 45666779999999999999999998777765322 22266677666
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCC--hhhhHHHhcCCCCCCCCCeEEE--EecccchhcccC-C
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNK--VGQLEGLIGGLDQYGPGSRIVV--TTRDKGVLEKFG-V 337 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v~~~~~-~ 337 (1243)
.+-.. -+.+..+++.+|++|.|.. ..|-+.+++. ...|.-|+| ||-++...-... .
T Consensus 92 i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 92 IIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHh
Confidence 54322 2344558999999999954 3455566544 356776666 666664321110 0
Q ss_pred CcceEEecCCCCHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHHhCCCc
Q 000874 338 EEEKIYGVNGLEFDEAFELFCNFAFEENHCPE-----DLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 338 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~-----~~~~l~~~i~~~~~glP 386 (1243)
....++++++|+.+|-.+++.+-+-.....-. -.++...-++..++|--
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 11178999999999999999883322111111 12345566777787754
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=2.8e-09 Score=114.15 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=113.1
Q ss_pred cCCcceEEecccCccccccccc----ccccCccceeecccccCcCcCc-------------hhhhcCCcccEeeccccCc
Q 000874 714 CLTDLVELDLRDCKRLKRISTR----FCKLKSLVKLCLDDCLNLERFP-------------EILEEMEHLKRIYLERTAI 776 (1243)
Q Consensus 714 ~l~~L~~L~L~~~~~l~~lp~~----~~~l~~L~~L~L~~~~~~~~~p-------------~~l~~l~~L~~L~L~~n~l 776 (1243)
.+++|++|+||+|-+....+.. +.++.+|++|.|.+|.....-. ...++-+.|+.+...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3456777777776654433322 3446667777777665432211 1123345677777777777
Q ss_pred cccCc-----ccccccCCcEEeecCCCCCCc----CCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCC
Q 000874 777 TELPS-----SFENLLGLEFLTVSGCSKLDK----LPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRL 847 (1243)
Q Consensus 777 ~~lp~-----~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l 847 (1243)
..-+. .++..+.|+.+.+..|.+... +-..+..+++|+.|++..|.++.-.+..
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~----------------- 232 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA----------------- 232 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------------
Confidence 64443 356667778887777765422 2234566777777777777655321110
Q ss_pred CCCChhhccCCCCCcEEEeccCCCCC-----cchhh-cCCCCCCEEeCcCCCCc-----ccchhccCCCCCCEEeecCCC
Q 000874 848 LSLPRLLLSGLSSLKFLYISDCAVTE-----IPQDI-ACLSSLTTLNLSGNNFE-----SLPASIKQLSQLSSLYLKDCK 916 (1243)
Q Consensus 848 ~~l~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 916 (1243)
+. ..++.+++|+.|++++|.+.+ +...+ ...|+|+.|.|.+|.++ .+-.++...+.|..|+|++|.
T Consensus 233 --La-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 233 --LA-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --HH-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 00 134557788888888888774 22222 34788999999999887 233456668899999999987
Q ss_pred C
Q 000874 917 M 917 (1243)
Q Consensus 917 ~ 917 (1243)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 5
No 53
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=3.6e-07 Score=98.81 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=90.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
..+.+.|||++|+|||+||+++++.+..+...+.|+.... ....... +.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~~--------------------~~~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSPA--------------------VLENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhHH--------------------HHhhc
Confidence 3467899999999999999999998766666667764210 0000011 11122
Q ss_pred cCceEEEEEecCCCh---hhhHH-HhcCCCCC-CCCCeEEEEeccc----------chhcccCCCcceEEecCCCCHHHH
Q 000874 289 RRMKVLIVLDDVNKV---GQLEG-LIGGLDQY-GPGSRIVVTTRDK----------GVLEKFGVEEEKIYGVNGLEFDEA 353 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~---~~~~~-l~~~~~~~-~~gsrIIiTTR~~----------~v~~~~~~~~~~~~~v~~L~~~ea 353 (1243)
+ +.-+|||||++.. .+|+. +...+... ..|+.+||+|.+. .+...++.. .+++++++++++.
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~ 166 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQK 166 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHH
Confidence 2 2348999999863 33442 22222211 2466665554443 455554443 6899999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 354 FELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
++++.+.++.... .--.+...-+++++.|-.-++.
T Consensus 167 ~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 167 IIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 9999998864332 1223455667777766554443
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=2.7e-06 Score=100.75 Aligned_cols=178 Identities=17% Similarity=0.275 Sum_probs=106.3
Q ss_pred CCCCCcccchhhHHh---HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 183 DSSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
...+.+||.+..+.. +.+++.. .....+.++|++|+||||+|+.+++.....|.. +.. . . .+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~--~-~~~~~ 76 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---V--T-SGVKD 76 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---c--c-ccHHH
Confidence 345679999887766 7777754 445678899999999999999999976554421 111 0 1 22222
Q ss_pred HHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEE--ecccc--hhc
Q 000874 260 LQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVT--TRDKG--VLE 333 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiT--TR~~~--v~~ 333 (1243)
+.+ ++.... .....+++.+|++|+++.. .+.+.+...+. .|..++|. |.+.. +..
T Consensus 77 ir~-ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 LRE-VIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHH-HHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 222 221110 0112457889999999865 34555554433 34555553 33332 111
Q ss_pred ccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchhHHHH
Q 000874 334 KFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCP-EDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 334 ~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.... ...++.+++++.++..+++.+.+-...... .-..+....+++.++|.+..+..+
T Consensus 138 aL~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 138 ALLS-RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHhc-cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1111 116799999999999999988653211111 222456778899999998765443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=3.1e-07 Score=103.99 Aligned_cols=116 Identities=22% Similarity=0.406 Sum_probs=83.6
Q ss_pred cCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEEeccC-CCCCcchhhcCCCCCC
Q 000874 807 IGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDC-AVTEIPQDIACLSSLT 885 (1243)
Q Consensus 807 l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~-~l~~lp~~l~~l~~L~ 885 (1243)
+..+.+++.|++++|.+..+|. ..++|+.|.+++|..+..+|.. + .++|+.|++++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccc
Confidence 3456889999999999999882 3457999999999998888852 2 368999999998 6666664 577
Q ss_pred EEeCcCCCC---cccchhccCCCCCCEEeecCCCC--CCcCC-CcCCCCcEEecccCCCCC
Q 000874 886 TLNLSGNNF---ESLPASIKQLSQLSSLYLKDCKM--LQSLP-ELPLCLKYLDLRDCNTLR 940 (1243)
Q Consensus 886 ~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~c~~--l~~lp-~l~~~L~~L~l~~c~~l~ 940 (1243)
.|+++++.. ..+| ++|+.|.+.++.. ...+| .+|++|++|++++|..+.
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 888877654 3455 3566777754331 22334 467889999999888664
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=3.4e-07 Score=103.71 Aligned_cols=137 Identities=25% Similarity=0.365 Sum_probs=95.5
Q ss_pred cccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCC-CCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCC
Q 000874 783 FENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGS-AISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSL 861 (1243)
Q Consensus 783 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L 861 (1243)
+..+.+++.|++++| .+..+|. -..+|+.|.+.+| .+..+|..+ .++|+.|.+++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------cc
Confidence 556789999999999 4666662 2346999999885 566677655 36899999999987776664 68
Q ss_pred cEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCc---ccchhccCCCCCCEEeecCCCCCCcCCCcCCCCcEEecccCC
Q 000874 862 KFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFE---SLPASIKQLSQLSSLYLKDCKMLQSLPELPLCLKYLDLRDCN 937 (1243)
Q Consensus 862 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~l~~c~ 937 (1243)
+.|+++++....++. -.++|+.|.+.+++.. .+|. .-.++|++|++++|......+.+|.+|+.|+++.|.
T Consensus 115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred ceEEeCCCCCccccc---CcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 888888776543221 1236778888654311 2221 112689999999999765444688999999997653
No 57
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=6.5e-06 Score=99.41 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=112.2
Q ss_pred CCCCCCcccchhhHHhHHHhhccC--CCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-----cC--ceEEEeecccccc
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-----FE--GRCFMSDVRRNSE 252 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~~ 252 (1243)
...++.++||+.++++|...|... ......++-|+|++|.|||+.++.|.++++.. .+ ..+++.+..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~---- 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN---- 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----
Confidence 345678999999999998887542 11334677899999999999999999876432 12 123443211
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCC---ccHHHHHhh-c--CceEEEEEecCCChh--h---hHHHhcCCCCCCCCCe
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPN---IPQFTKERV-R--RMKVLIVLDDVNKVG--Q---LEGLIGGLDQYGPGSR 321 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~---~~~~l~~~L-~--~kr~LlVLDdv~~~~--~---~~~l~~~~~~~~~gsr 321 (1243)
......+...+..++...... .+.. ....+...+ . +...+||||+|+... + +-.|..... ..+++
T Consensus 827 -Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SK 902 (1164)
T PTZ00112 827 -VVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSK 902 (1164)
T ss_pred -cCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCe
Confidence 133445666666666433322 2222 222233332 1 224689999997553 1 322322211 24566
Q ss_pred EEE--Eecccc--------hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCC-CCCCch-HHHHHHHHHHHhCCCchhH
Q 000874 322 IVV--TTRDKG--------VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEE-NHCPED-LNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 322 IIi--TTR~~~--------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~-~~~~~~-~~~l~~~i~~~~~glPLal 389 (1243)
|+| +|.+.+ +...++. ..+..++.+.++-.+++..++-.. ....++ ++-+|+.++...|..-.||
T Consensus 903 LiLIGISNdlDLperLdPRLRSRLg~---eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL 979 (1164)
T PTZ00112 903 LVLIAISNTMDLPERLIPRCRSRLAF---GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL 979 (1164)
T ss_pred EEEEEecCchhcchhhhhhhhhcccc---ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH
Confidence 554 333222 2222322 346679999999999999887432 112222 3333343443344455666
Q ss_pred HHHhhhh
Q 000874 390 KVLGSSL 396 (1243)
Q Consensus 390 ~~~g~~L 396 (1243)
.++-.+.
T Consensus 980 DILRrAg 986 (1164)
T PTZ00112 980 QICRKAF 986 (1164)
T ss_pred HHHHHHH
Confidence 6555443
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=9.9e-07 Score=109.67 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=57.7
Q ss_pred ceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc-ccCcccccccCCcEEeecC
Q 000874 718 LVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT-ELPSSFENLLGLEFLTVSG 796 (1243)
Q Consensus 718 L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 796 (1243)
++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555555555555555555555555555555555555555555555555555554 4555555555566666655
Q ss_pred CCCCCcCCCccCCC-CCCcEEEccCCC
Q 000874 797 CSKLDKLPDNIGNL-KSLDFIAAVGSA 822 (1243)
Q Consensus 797 ~~~~~~lp~~l~~l-~~L~~L~l~~~~ 822 (1243)
|.+.+.+|..+..+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555555432 344455555553
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.30 E-value=4.9e-06 Score=90.43 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=99.9
Q ss_pred CCCccc--chhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 185 SNGLVG--LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 185 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
.++|++ .+..++.+.+++.. ...+.|.|+|..|+|||++|+.++++........+|+... .+..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-----------~~~~ 79 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-----------ELAQ 79 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-----------HHHH
Confidence 344552 34466777777543 4467889999999999999999999766554444555321 1111
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh---hh-HHHhcCCCC-CCCCCeEEEEecccc-------
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG---QL-EGLIGGLDQ-YGPGSRIVVTTRDKG------- 330 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIIiTTR~~~------- 330 (1243)
.. .. +.+.+.+ .-+|||||++... .| +.+...+.. ...+.++|+||+...
T Consensus 80 ~~-~~----------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 80 AD-PE----------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred hH-HH----------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 00 00 1111222 2389999997653 22 233322211 123457889887432
Q ss_pred --hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 000874 331 --VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLG 393 (1243)
Q Consensus 331 --v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g 393 (1243)
+...+... ..+++++++.++...++...+-+... .--.+....+++.+.|+|..+..+-
T Consensus 142 ~~L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 142 PDLRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 11122112 57999999999999988775432211 1223445677777888887665543
No 60
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=3.6e-06 Score=82.12 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=77.9
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
-+++.|.|+.|+|||||++.++.+.. .-...+|+... +.. ....... ...+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~--------~~~-~~~~~~~------------~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD--------DPR-DRRLADP------------DLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC--------CHH-HHHHhhh------------hhHHHHHHhhc
Confidence 36899999999999999999998765 33444555311 111 1000000 02222444444
Q ss_pred CceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhccc----CCCcceEEecCCCCHHH
Q 000874 290 RMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKF----GVEEEKIYGVNGLEFDE 352 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~----~~~~~~~~~v~~L~~~e 352 (1243)
.++.+|+||+|....+|...+..+...++..+|++|+........- -......+++.+|+-.|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 5788999999999888887776665556678999999877665321 11122568899998876
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.28 E-value=7.8e-07 Score=98.83 Aligned_cols=261 Identities=22% Similarity=0.238 Sum_probs=168.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
...|.|.++|.|||||||++-.+.. +...|....++.+.....+. ..+.-.+...+.-... .+......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~--~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQ--PGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccc--cchHHHHHHHHH
Confidence 4578999999999999999999999 88889888777665554333 2222222222222111 222233457778
Q ss_pred hcCceEEEEEecCCChhh-hHHHhcCCCCCCCCCeEEEEecccchhcccCCCcceEEecCCCCHH-HHHHHHHHhhcCCC
Q 000874 288 VRRMKVLIVLDDVNKVGQ-LEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGVEEEKIYGVNGLEFD-EAFELFCNFAFEEN 365 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~-ea~~Lf~~~af~~~ 365 (1243)
..++|.++|+||-.+... -..+...+....+.-+|+.|+|+.. .+.++..+.++.|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~-----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI-----LVAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh-----cccccccccCCccccCCchhHHHHHHHHHhc
Confidence 889999999999866533 2223333333355667899999653 3444478888998876 79999877663211
Q ss_pred ---CCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCCCHHHHHHHHHH----Hhhcc---CcchhhhHhHHhhccccCch
Q 000874 366 ---HCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLDD----LNRIC---ESEIHDIYDILKISFNELIP 435 (1243)
Q Consensus 366 ---~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~----l~~~~---~~~i~~v~~~l~~sy~~L~~ 435 (1243)
.....-.....+|.+...|.|++|...++..+.....+-.+.++. +.... ...-......+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 112233456789999999999999999999887766555544442 22220 01112457788999999999
Q ss_pred hhhhhhheeccccCCCCHHHHHHHHhh-c--cc-----chhhhcccccceEEc
Q 000874 436 REKSMFLDIACFFEGEDKDILMRILDD-S--ES-----YALGVLIDKSLITIS 480 (1243)
Q Consensus 436 ~~k~~fl~~a~f~~~~~~~~~~~~l~~-~--~~-----~~~~~L~~~sLi~~~ 480 (1243)
-++-.|.-++.|..++..+.......+ . .. ..+..+++++++...
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 999999999999877766532222111 1 01 124557888877554
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-07 Score=112.56 Aligned_cols=195 Identities=27% Similarity=0.307 Sum_probs=82.5
Q ss_pred cccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcE
Q 000874 712 IECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEF 791 (1243)
Q Consensus 712 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 791 (1243)
+..+++|..|++.+|.+.+... .+..+++|++|++++|.+...- .+..++.|+.|++.+|.++.+.. +..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 4444455555555444333221 1333445555555544443321 23333445555555555554432 333555555
Q ss_pred EeecCCCCCCcCC-CccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCC--CCcEEEecc
Q 000874 792 LTVSGCSKLDKLP-DNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLS--SLKFLYISD 868 (1243)
Q Consensus 792 L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~--~L~~L~Ls~ 868 (1243)
+++++|.+...-+ . +..+.+|+.+.+.+|.+..+... ..+..+..+.+..+.... +.. +..+. .|+.+++++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-~~~~~l~~~~l~~n~i~~-~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-DLLKKLVLLSLLDNKISK-LEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch-HHHHHHHHhhccccccee-ccC--cccchhHHHHHHhccc
Confidence 5555554433322 1 34455555555555555443211 111111111222211100 000 11111 255555555
Q ss_pred CCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCC
Q 000874 869 CAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCK 916 (1243)
Q Consensus 869 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 916 (1243)
|.+..++..+..+..+..|++..|.+..+. .+...+.+..+....++
T Consensus 242 n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 242 NRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred Cccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 555555444555555555555555555433 23334444444444444
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.3e-06 Score=108.52 Aligned_cols=104 Identities=24% Similarity=0.360 Sum_probs=63.8
Q ss_pred cceeecccccCcCcCchhhhcCCcccEeeccccCcc-ccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccC
Q 000874 742 LVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT-ELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVG 820 (1243)
Q Consensus 742 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 820 (1243)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666666666666666666666666666665 5666666666666666666666666666666666666666666
Q ss_pred CCCc-cCCccccCC-CCCcEEEeccCC
Q 000874 821 SAIS-QLPSSVADS-NVLRMLFFCRCR 845 (1243)
Q Consensus 821 ~~i~-~l~~~~~~l-~~L~~L~l~~~~ 845 (1243)
|.+. .+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6555 445544432 344555555554
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.24 E-value=4.6e-06 Score=91.67 Aligned_cols=93 Identities=28% Similarity=0.477 Sum_probs=74.0
Q ss_pred CCCccEEEccccccccCchHHHHHHHHhhcCCceeeecCccccCCCcchHHHHHHhhhcceeEEeeccCccc--------
Q 000874 6 SCNYDVFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYAS-------- 77 (1243)
Q Consensus 6 ~~~~dvF~sf~g~d~r~~f~~~L~~~L~~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~s~~y~~-------- 77 (1243)
....|||||||.. |....++-+.-.| .-.|++||+|-+++..|. +.+.|++-|..++-+|.|++||...
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~L-QL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLL-QLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHH-HhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 4578999999875 3455666555555 999999999999999886 5669999999999999999996543
Q ss_pred chhhHHHHHHHHHhHhcCCCEEEeEEEE
Q 000874 78 SKWCLNELVKILECKNTNGQIVIPVFYN 105 (1243)
Q Consensus 78 s~wcl~el~~i~~~~~~~~~~v~Pvfy~ 105 (1243)
..|.-.||+..++|.+. ++|||-.
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~ 710 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc
Confidence 36777788888877654 9999843
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.8e-07 Score=111.16 Aligned_cols=241 Identities=24% Similarity=0.218 Sum_probs=108.8
Q ss_pred ccccceecccccccccccccccccccccccccCCCcccccCCCCCCCCCccEEeccCCcCCCcCCCcccCCCCccccccc
Q 000874 613 PKNIVELSLRFSKVEQIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQIS 692 (1243)
Q Consensus 613 ~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~~~ 692 (1243)
+..+..+.++.|.|...-.....+.+|..|++.+|++......+..+++|++|+|++|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N---------------------- 128 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN---------------------- 128 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc----------------------
Confidence 3444444455555554323344445555555555543333222444555555555544
Q ss_pred cccceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCc-hhhhcCCcccEeec
Q 000874 693 GKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFP-EILEEMEHLKRIYL 771 (1243)
Q Consensus 693 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L 771 (1243)
.|+.+. .+..++.|+.|++++|.+... ..+..+++|+.+++++|.+...-+ . +..+.+|+.+++
T Consensus 129 -----------~I~~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 129 -----------KITKLE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred -----------cccccc-chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 333332 133344455555555543322 113335555555555555444333 2 345555666666
Q ss_pred cccCccccCcccccccCCcEEeecCCCCCCcCCCccCCCC--CCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCC
Q 000874 772 ERTAITELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLK--SLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLS 849 (1243)
Q Consensus 772 ~~n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~ 849 (1243)
.+|.+..+.. +..+..+..+++..|.+...-+ +..+. .|+.+++.+|.+...+..
T Consensus 194 ~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~-------------------- 250 (414)
T KOG0531|consen 194 GGNSIREIEG-LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEG-------------------- 250 (414)
T ss_pred cCCchhcccc-hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccccc--------------------
Confidence 6665554432 2222233333444443322111 11112 255666666655554422
Q ss_pred CChhhccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcc----cch-hccCCCCCCEEeecCCCCCC
Q 000874 850 LPRLLLSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFES----LPA-SIKQLSQLSSLYLKDCKMLQ 919 (1243)
Q Consensus 850 l~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~----lp~-~l~~l~~L~~L~L~~c~~l~ 919 (1243)
+..+..+..|++.++.+..+.. +...+.+..+.+..|.+.. ... .....+.++.+.+..++.-.
T Consensus 251 -----~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 251 -----LENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred -----ccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 2334455555555555443221 2334444455555554431 111 14455667777777666544
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.19 E-value=5e-06 Score=96.95 Aligned_cols=175 Identities=18% Similarity=0.288 Sum_probs=101.4
Q ss_pred CCCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccccc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSE 252 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 252 (1243)
...+.+.|++..++++.+.+...- -...+-|.++|++|+|||++|++++++....|-.. ..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~~---- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----VG---- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----ch----
Confidence 344578999999999888764210 02345689999999999999999999876543211 00
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCCcc-HHHHHhhcCceEEEEEecCCChh----------------hhHHHhcCCCC
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPNIP-QFTKERVRRMKVLIVLDDVNKVG----------------QLEGLIGGLDQ 315 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1243)
..+....... ..... ..++..-...+.+|+||+++... .+..+...+..
T Consensus 190 -----~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 -----SELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -----HHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 0111111100 00000 11111123456899999986531 12333332222
Q ss_pred C--CCCCeEEEEecccchh-----cccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCc
Q 000874 316 Y--GPGSRIVVTTRDKGVL-----EKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCP-EDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 316 ~--~~gsrIIiTTR~~~v~-----~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~glP 386 (1243)
. ..+.+||.||...... .....+ ..++++..+.++..++|..++.+..... .. ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd--~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFD--RIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCc--eEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 2 2466788888754322 222234 6899999999999999998875543222 12 345666676654
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.6e-08 Score=100.56 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=51.4
Q ss_pred ccceecccCCccc--ccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCc--hhhhcCCcccEe
Q 000874 694 KITRLYLSQSAIE--EVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFP--EILEEMEHLKRI 769 (1243)
Q Consensus 694 ~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L 769 (1243)
.+++|||++..|+ ++...+..+.+|+.|.|.++.....+-..+++-.+|+.|+|+.|+...... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555666666665 444456667777777777777666666666677777777777776554332 234455555555
Q ss_pred eccccCc
Q 000874 770 YLERTAI 776 (1243)
Q Consensus 770 ~L~~n~l 776 (1243)
+|+.|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555443
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=6e-08 Score=106.25 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=61.7
Q ss_pred CCCCCcEEEeccCCCCCCCChhhc-cCCCCCcEEEeccCCCCC---cchhhcCCCCCCEEeCcCCCCc------ccchhc
Q 000874 832 DSNVLRMLFFCRCRRLLSLPRLLL-SGLSSLKFLYISDCAVTE---IPQDIACLSSLTTLNLSGNNFE------SLPASI 901 (1243)
Q Consensus 832 ~l~~L~~L~l~~~~~l~~l~~~~~-~~l~~L~~L~Ls~~~l~~---lp~~l~~l~~L~~L~Ls~n~l~------~lp~~l 901 (1243)
+..+|+.|.+.+|+.++......+ .+.+.|+.|++..|.+.. +-..-.+++.|+.|.|+.|... .+..+-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 446666666666666544332222 256777777777776552 3333456777777777766332 122233
Q ss_pred cCCCCCCEEeecCCCCCCcCC----CcCCCCcEEecccCCCCC
Q 000874 902 KQLSQLSSLYLKDCKMLQSLP----ELPLCLKYLDLRDCNTLR 940 (1243)
Q Consensus 902 ~~l~~L~~L~L~~c~~l~~lp----~l~~~L~~L~l~~c~~l~ 940 (1243)
..+..|..|.|++|+.+..-. ...++|+.+++.+|....
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 456667777777777644321 122356666666665444
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.18 E-value=2e-05 Score=91.49 Aligned_cols=196 Identities=14% Similarity=0.097 Sum_probs=105.5
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc-Cc-eEEEeeccccccCCCChHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-EG-RCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~l~~l 260 (1243)
...+.++|++..++.+..++.. +..+.+.++|+.|+||||+|+++++.+..+- .. .+++.. ...... ....+
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~-~~~~~~--~~~~~ 85 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV-ADFFDQ--GKKYL 85 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech-hhhhhc--chhhh
Confidence 3456799999999999998865 3344678999999999999999999765332 22 223321 110000 00000
Q ss_pred HH--HHHHhhhcccccccCCCccHHHHHhh---------cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEec
Q 000874 261 QK--QMLSTILSEKLEVAGPNIPQFTKERV---------RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTR 327 (1243)
Q Consensus 261 ~~--~ll~~l~~~~~~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR 327 (1243)
.. .....+... ...+......+++.+ ...+-+||+||++... ....+...+....+.+++|+||.
T Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hcCcchhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00 000000000 000000011122111 1334589999997653 23334333333345577888775
Q ss_pred cc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 328 DK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 328 ~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
.. .+....... ...+++.+++.++..+++...+-..... -..+....++++++|.+-.+
T Consensus 164 ~~~~~~~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 164 QPSKLIPPIRSR-CLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred ChhhCchhhcCC-ceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 43 222222111 2578899999999988888765332211 22445677888888875543
No 70
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.5e-06 Score=72.24 Aligned_cols=58 Identities=36% Similarity=0.537 Sum_probs=47.9
Q ss_pred CCCcEEEeccCCCCCcch-hhcCCCCCCEEeCcCCCCcccch-hccCCCCCCEEeecCCC
Q 000874 859 SSLKFLYISDCAVTEIPQ-DIACLSSLTTLNLSGNNFESLPA-SIKQLSQLSSLYLKDCK 916 (1243)
Q Consensus 859 ~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 916 (1243)
|+|++|++++|++..+|. .+..+++|++|++++|+++.++. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888888888774 66788888889998888887775 67888899999988886
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.6e-05 Score=96.22 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=112.1
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-c-Cc-eEEEeec------------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-EG-RCFMSDV------------ 247 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~------------ 247 (1243)
.....+||-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-.. . .. -|..+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 45578999999999999988753 224456899999999999999999876432 1 00 0110000
Q ss_pred cc-cccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEE
Q 000874 248 RR-NSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVV 324 (1243)
Q Consensus 248 ~~-~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi 324 (1243)
-+ ......++..+ +++...+. .....+++-++|||+++.. .....|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00 00000222222 22222210 1112467789999999765 346666665554455667766
Q ss_pred Eecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-hHHH
Q 000874 325 TTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL-VLKV 391 (1243)
Q Consensus 325 TTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL-al~~ 391 (1243)
+|.+.. +....... ...|++++|+.++..+++.+.+-... ..-..+....|++.++|.|- |+..
T Consensus 155 aTTe~~kLl~TIlSR-Cq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSR-CLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHh-heEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 665543 33222111 17899999999999998887653221 11223457789999999875 4433
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=1.2e-05 Score=80.57 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=70.1
Q ss_pred ccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhh
Q 000874 189 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTI 268 (1243)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 268 (1243)
+|++..+..+...+.. ...+.+.|+|.+|+||||+|+++++.+...-..++++. ....... ........ .
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~~--~ 70 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELFG--H 70 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHhh--h
Confidence 4778888888888765 24567889999999999999999998754333334442 1111110 00000000 0
Q ss_pred hcccccccCCCccHHHHHhhcCceEEEEEecCCCh-----hhhHHHhcCCCCC---CCCCeEEEEecccc
Q 000874 269 LSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV-----GQLEGLIGGLDQY---GPGSRIVVTTRDKG 330 (1243)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIIiTTR~~~ 330 (1243)
. ............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 71 ~---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 0000112223456789999999864 2233333333221 36778888888654
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.2e-05 Score=90.25 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=110.7
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc--ccCceEEEeeccccc---------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEGRCFMSDVRRNS--------- 251 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~--------- 251 (1243)
...+.++|-+.-++.|..++..+ .-...+.++|++|+||||+|+.+++.+.. .+...|+.+......
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 44567999998888898888764 23456799999999999999999987642 222233332110000
Q ss_pred ----cCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEE
Q 000874 252 ----ETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVT 325 (1243)
Q Consensus 252 ----~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiT 325 (1243)
....++..+. ++...+. .....+++-++|+|+++.. ..+..+...+....+...+|++
T Consensus 89 el~~~~~~~vd~iR-~l~~~~~---------------~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 89 EIDAASNNSVEDVR-DLREKVL---------------LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred EecccccCCHHHHH-HHHHHHh---------------hccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 0001111111 1111110 0012245668999999865 3466676665544555566665
Q ss_pred ecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 326 TRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 326 TR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
|.. ..+....... ...+++.+++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 153 t~~~~kl~~~I~SR-c~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 153 TTEPEKMPPTILSR-TQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCChhhCChHHhcc-eEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 543 3333222211 26899999999999999988764333211 2345778889999987533
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3e-05 Score=90.15 Aligned_cols=180 Identities=12% Similarity=0.188 Sum_probs=108.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccC---------------------ce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE---------------------GR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 241 (1243)
...++++|-+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+..... ..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 45577999999999999988753 23466789999999999999999987642210 00
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+. . ... ..+.++ +++...+.. ....+++-++|+|+++... .++.++..+....+.
T Consensus 91 ~~~~---~-~~~-~~v~~i-r~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 91 IEID---A-ASR-TKVEEM-REILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EEec---c-ccc-CCHHHH-HHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 0010 0 000 111111 111111100 0012455689999998765 366666665555566
Q ss_pred CeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 320 SRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 320 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.++|++|.+.. +...... ....+++++++.++..+.+...+-..+. .-..+.+..|++.++|.|-.
T Consensus 150 ~~fIl~t~~~~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 150 IKFILATTDVEKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred eEEEEEcCChHhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77777765433 3222211 1168999999999999888776533221 11234567788899998763
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-07 Score=98.68 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=108.5
Q ss_pred cccceecccccccc--cccccccccccccccccCCCcccccCC-CCCCCCCccEEeccCCcCCCcCCCcccCCCCccccc
Q 000874 614 KNIVELSLRFSKVE--QIWEGKKKAFKLKSIDLSHSEHLIRIP-DLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQ 690 (1243)
Q Consensus 614 ~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~p~~i~~L~~L~~l~ 690 (1243)
..|++|||+++.|+ ++-.-++.+.+|+.|.|.++++...+. .+.+-.+|+.|+|+.|......
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------- 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence 35888888888887 455556788999999999988766555 4788899999999998654421
Q ss_pred cccccceecccCCcccccccccccCCcceEEecccCcccccccccc-c-ccCccceeecccccCcC---cCchhhhcCCc
Q 000874 691 ISGKITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRF-C-KLKSLVKLCLDDCLNLE---RFPEILEEMEH 765 (1243)
Q Consensus 691 ~~~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~-~l~~L~~L~L~~~~~~~---~~p~~l~~l~~ 765 (1243)
.+.--+.+++.|..|+|+.|......-..+ . --++|..|+|+||...- .+......+++
T Consensus 251 ----------------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 251 ----------------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred ----------------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 111124567778888888877655432111 1 13567777887765431 12222345677
Q ss_pred ccEeeccccCcc--ccCcccccccCCcEEeecCCCCCCcCCC---ccCCCCCCcEEEccCC
Q 000874 766 LKRIYLERTAIT--ELPSSFENLLGLEFLTVSGCSKLDKLPD---NIGNLKSLDFIAAVGS 821 (1243)
Q Consensus 766 L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~---~l~~l~~L~~L~l~~~ 821 (1243)
|..|+|+++..- .+-..|..++.|++|.++.|..+ .|. .+...|+|.+|++.++
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 777777765422 22223556677777777777532 222 2344555555555443
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.7e-05 Score=94.13 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 241 (1243)
...+++||.+.-++.|.+++..+ .-...+.++|..|+||||+|+.+.+.+-.. |...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 45678999999999999998754 234566799999999999999999865321 1111
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~g 319 (1243)
+.+.. ... .++.++.+ ++.... ..-..++.-++|||+++.... +..++..+......
T Consensus 91 iEIDA----as~-rgVDdIRe-LIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDA----ASN-RGVDEMAA-LLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecc----ccc-ccHHHHHH-HHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 11100 000 12222211 111100 001124455888999987654 66666655544567
Q ss_pred CeEEEEecccchh-cccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hhHHH
Q 000874 320 SRIVVTTRDKGVL-EKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP-LVLKV 391 (1243)
Q Consensus 320 srIIiTTR~~~v~-~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP-Lal~~ 391 (1243)
.++|+||++.+-. ..... ....+.++.++.++..+.+.+.+-.... .-..+..+.|++.++|-. -|+..
T Consensus 150 v~FILaTtd~~KIp~TIrS-RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLS-RCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhh-heEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7888887765432 12111 1168999999999999988877633221 122345678888888854 34444
No 77
>PTZ00202 tuzin; Provisional
Probab=98.12 E-value=1.6e-05 Score=89.36 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=103.6
Q ss_pred CCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
.|.+...|+||+.++.++...|...+.+..+++.|.|++|+|||||++.+..... ..+++.+. .+..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHH
Confidence 4566789999999999999999754434567999999999999999999997653 22455433 355789
Q ss_pred HHHHHHhhhcccccccCCCccHHHHHhh-----c-CceEEEEEecC--CChhh-hHHHhcCCCCCCCCCeEEEEecccch
Q 000874 261 QKQMLSTILSEKLEVAGPNIPQFTKERV-----R-RMKVLIVLDDV--NKVGQ-LEGLIGGLDQYGPGSRIVVTTRDKGV 331 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVLDdv--~~~~~-~~~l~~~~~~~~~gsrIIiTTR~~~v 331 (1243)
...++.+|+..... ...++...|.+.+ . +++.+||+-== .+... ..+.. .+.....-|.|++----+.+
T Consensus 326 Lr~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 326 LRSVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 99999998863221 1122333343333 2 67777777521 11111 11111 11222345677765443332
Q ss_pred hccc-CCCcceEEecCCCCHHHHHHHHHHh
Q 000874 332 LEKF-GVEEEKIYGVNGLEFDEAFELFCNF 360 (1243)
Q Consensus 332 ~~~~-~~~~~~~~~v~~L~~~ea~~Lf~~~ 360 (1243)
.... ..+.-..|-++.++.++|.++-.+.
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2111 1122257999999999999876554
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.5e-05 Score=92.19 Aligned_cols=180 Identities=15% Similarity=0.122 Sum_probs=108.5
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------Cce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 241 (1243)
...+.+||.+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-... ...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 45678999999999999998754 2346788999999999999999998653211 111
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
+.+.. +.. .++.++.+ ++.... .....+++-++|+|+|+... ....++..+.....+
T Consensus 90 iEIDA----As~-~~VddIRe-li~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDA----ASR-TKVEDTRE-LLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecc----ccc-CCHHHHHH-HHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11100 000 12222211 111100 01123566789999998753 455565555444456
Q ss_pred CeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 320 SRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 320 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.++|++|.+.. +.... ......+++++++.++..+.+...+-+.+. .-..+....|++.++|-+-.
T Consensus 149 v~FILaTtd~~kIp~TI-lSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 149 VKFLFATTDPQKLPITV-ISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred cEEEEEECChHhhhHHH-HHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77888776643 21111 111268999999999998888776643222 12234467788888887643
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=3.2e-05 Score=88.24 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=110.4
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc------ccCceEEEeeccccccCCCChHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
+.++|-+..++.+...+..+ .-.....++|+.|+||||+|+.++..+-. +.+...|... .... ..+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~-i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKS-IGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCC-CCHHH
Confidence 46889888889999998654 34567789999999999999999996532 2333333210 1111 33334
Q ss_pred HHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCC--ChhhhHHHhcCCCCCCCCCeEEEEecccchh-cccC
Q 000874 260 LQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVN--KVGQLEGLIGGLDQYGPGSRIVVTTRDKGVL-EKFG 336 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~~ 336 (1243)
+.. +...+... ...+++=++|+|+++ +...+..++..+....+++.+|++|.+.+.. ....
T Consensus 78 ir~-~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRN-IIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHH-HHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 332 22222110 112344456666654 4456788887777667889999888765422 2111
Q ss_pred CCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 337 VEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 337 ~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.. ...+++.++++++..+.+.... .+ . ..+.+..++.+++|.|..+..+
T Consensus 142 SR-c~~~~~~~~~~~~~~~~l~~~~-~~--~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SR-CQIYKLNRLSKEEIEKFISYKY-ND--I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hh-ceeeeCCCcCHHHHHHHHHHHh-cC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1689999999999988776553 11 1 1233667889999988755433
No 80
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.09 E-value=4.4e-06 Score=87.65 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=36.4
Q ss_pred CcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 187 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
.||||+.+++++...|........+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999954333667999999999999999999999988777
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=98.08 E-value=1.9e-05 Score=90.31 Aligned_cols=183 Identities=13% Similarity=0.201 Sum_probs=104.9
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc-ccCceEEEeeccccccCCCChHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
|...+.++|.+.-++.|..++..+ ..+-+-++|++|+||||+|+++++.+.. .|...+.-.+ .+.. .+...+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~-~~~~~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDD-RGIDVV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccc-ccHHHH
Confidence 344567899998888888887653 3445679999999999999999997633 3322111111 1111 333333
Q ss_pred HHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEeccc-chhcccCC
Q 000874 261 QKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLEKFGV 337 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~ 337 (1243)
+.. +.......... -.++.-++|||+++... .-..+...+......+++|+++... .+......
T Consensus 82 r~~-i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 82 RNK-IKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHH-HHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 222 22111110000 01346689999998753 2333433333345567787777543 22221111
Q ss_pred CcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 338 EEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 338 ~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
. ...++++++++++..+.+...+-..+..- ..+....+++.++|-.-
T Consensus 149 R-c~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 R-CAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred h-hhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 1 15799999999999888887764322211 13456778888888653
No 82
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.08 E-value=6.6e-06 Score=80.80 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=69.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc-----cCceEEEeeccccccCCCChHHHHHHHHHhhhccccc-ccCCCccH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-----FEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE-VAGPNIPQ 282 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~ 282 (1243)
+-+++.|+|.+|+|||++++.+.+....+ -..++|+.. .. . .....+.+.++..+...... .....+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC-PS---S-RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HH---H-SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe-CC---C-CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 45789999999999999999999976543 233445532 21 1 36778889999887765544 22223334
Q ss_pred HHHHhhcCce-EEEEEecCCCh-h--hhHHHhcCCCCCCCCCeEEEEecc
Q 000874 283 FTKERVRRMK-VLIVLDDVNKV-G--QLEGLIGGLDQYGPGSRIVVTTRD 328 (1243)
Q Consensus 283 ~l~~~L~~kr-~LlVLDdv~~~-~--~~~~l~~~~~~~~~gsrIIiTTR~ 328 (1243)
.+.+.+...+ .+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5556665544 59999999876 3 2444443333 566778877765
No 83
>PRK08727 hypothetical protein; Validated
Probab=98.07 E-value=4.9e-05 Score=82.45 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCCcccchh-hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHH
Q 000874 185 SNGLVGLNS-RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQ 263 (1243)
Q Consensus 185 ~~~~vGr~~-~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 263 (1243)
.++|++-.. .+..+..+.. + .....+.|+|..|+|||+||+++++....+...+.|+.. .+....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----------~~~~~~ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----------QAAAGR 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----------HHhhhh
Confidence 445665543 3333333332 1 223459999999999999999999987666555566641 111111
Q ss_pred HHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh---hhH-HHhcCCCC-CCCCCeEEEEecccc--------
Q 000874 264 MLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG---QLE-GLIGGLDQ-YGPGSRIVVTTRDKG-------- 330 (1243)
Q Consensus 264 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gsrIIiTTR~~~-------- 330 (1243)
+.. ..+.+. +.-+|||||++... .++ .+...+.. ...|..||+|++...
T Consensus 84 ~~~-----------------~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 84 LRD-----------------ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred HHH-----------------HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 111 111111 23489999997432 222 22221111 134667999998432
Q ss_pred -hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 000874 331 -VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 331 -v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP 386 (1243)
+...+... .++++++++.++..+++.+++....- .-..+...-+++.+.|-.
T Consensus 146 dL~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 146 DLRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 22222222 58999999999999999987753221 122344556666666543
No 84
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.07 E-value=6e-05 Score=93.05 Aligned_cols=206 Identities=13% Similarity=0.062 Sum_probs=110.4
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc--cc---CceEEEeeccccccCCCC
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EF---EGRCFMSDVRRNSETGGG 256 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F---~~~~~~~~~~~~~~~~~~ 256 (1243)
+...+.++|.+..++.+...+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+..- ..... .+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~l~-~d 224 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTTLR-WD 224 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chhcc-CC
Confidence 34556799999999988877753 33457999999999999999999875432 12 112233211 11000 11
Q ss_pred hHHHHHHH---------------HHhhhc-------------ccccccCC-----CccHHHHHhhcCceEEEEEecCCCh
Q 000874 257 LEHLQKQM---------------LSTILS-------------EKLEVAGP-----NIPQFTKERVRRMKVLIVLDDVNKV 303 (1243)
Q Consensus 257 l~~l~~~l---------------l~~l~~-------------~~~~~~~~-----~~~~~l~~~L~~kr~LlVLDdv~~~ 303 (1243)
...+...+ +...+. .-.-.+.. .....+.+.++.+++.++-|+.|..
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 11111111 111000 00000111 1234566667778888887766544
Q ss_pred h--hhHHHhcCCCCCCCCCeEEE--Eecccchh-cccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 000874 304 G--QLEGLIGGLDQYGPGSRIVV--TTRDKGVL-EKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRV 378 (1243)
Q Consensus 304 ~--~~~~l~~~~~~~~~gsrIIi--TTR~~~v~-~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i 378 (1243)
+ .|+.+...+....+...|+| ||++.... ..... ....+.+.+++.+|.++++.+.+-..... -..+....|
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L 381 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELI 381 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3 36666555554445555555 56654321 11111 11467889999999999999876422111 113344555
Q ss_pred HHHhCCCchhHHHHhhh
Q 000874 379 VWYATSNPLVLKVLGSS 395 (1243)
Q Consensus 379 ~~~~~glPLal~~~g~~ 395 (1243)
.+++..-+-|+..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55554445566555443
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.07 E-value=2.7e-05 Score=96.84 Aligned_cols=171 Identities=18% Similarity=0.282 Sum_probs=98.3
Q ss_pred CCCCCcccchhhHH---hHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 183 DSSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
...+.++|.+..+. .+.+++.. +....+.++|++|+||||+|+.+++.....|. .+.. . . .++.+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~-~~i~d 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--L-AGVKD 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--h-hhhHH
Confidence 34567899888774 46666654 44566789999999999999999997765552 1211 0 0 22222
Q ss_pred HHHHHHHhhhcccccccCCCccHHHHHh--hcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEE--ecccc--h
Q 000874 260 LQKQMLSTILSEKLEVAGPNIPQFTKER--VRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVT--TRDKG--V 331 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiT--TR~~~--v 331 (1243)
+.+ .+.. ..+. ..+++.+||||||+.. .+.+.+...+ ..|+.++|+ |.+.. +
T Consensus 93 ir~-~i~~----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 LRA-EVDR----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred HHH-HHHH----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 211 1111 1111 1246779999999754 4556665433 345555553 33321 1
Q ss_pred hcccCCCcceEEecCCCCHHHHHHHHHHhhcCC-----CCCCchHHHHHHHHHHHhCCCc
Q 000874 332 LEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEE-----NHCPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 332 ~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~glP 386 (1243)
...... ...++.+++|+.++...++.+.+-.. .....-..+....+++++.|.-
T Consensus 153 ~~aL~S-R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 153 NKALVS-RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhHhhc-cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 111111 11579999999999999988765310 1111122345577777887763
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00023 Score=81.99 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=110.8
Q ss_pred CCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc--CceEEEeeccccccCCCChH
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFMSDVRRNSETGGGLE 258 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~l~ 258 (1243)
.|.....++|-+.-.+.+.+.+..+ .-.....++|+.|+||||+|..+++.+-.+= .....-... ..... .+-.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~-~~~c 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAI-DPDH 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccC-CCCC
Confidence 3445678999999999999988764 2345688999999999999999998653211 100000000 00000 0000
Q ss_pred HHHHHHHHhhhcccc-------cccC----CCc-cHHHHH---hh-----cCceEEEEEecCCChh--hhHHHhcCCCCC
Q 000874 259 HLQKQMLSTILSEKL-------EVAG----PNI-PQFTKE---RV-----RRMKVLIVLDDVNKVG--QLEGLIGGLDQY 316 (1243)
Q Consensus 259 ~l~~~ll~~l~~~~~-------~~~~----~~~-~~~l~~---~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~ 316 (1243)
..-+.+...- ..+. ...+ ..+ .+.+++ .+ .+.+-++|+||++... ....++..+...
T Consensus 90 ~~c~~i~~~~-HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGA-HGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccC-CCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111000 0000 0000 011 122332 22 2456789999997654 344555444433
Q ss_pred CCCCeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 000874 317 GPGSRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLG 393 (1243)
Q Consensus 317 ~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g 393 (1243)
.+++.+|++|.+.. +...... ....+.+.+++.++..+++...... .. .+....++..++|.|+....+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRS-RCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhc-cceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 45667777777654 3222211 1268999999999999999876411 11 1112678999999998655443
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=5.4e-05 Score=90.45 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=108.6
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-----c-------------------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-----F------------------- 238 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F------------------- 238 (1243)
...+++||-+.-++.|.+++..+ .-...+.++|..|+||||+|+.+.+.+-.. .
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 45678999999999999999764 234567899999999999999999865421 0
Q ss_pred --CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCC
Q 000874 239 --EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLD 314 (1243)
Q Consensus 239 --~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~ 314 (1243)
...+.+.. ... .++.++.+ ++..+. ..-..++.-++|||+++... ....|+..+.
T Consensus 91 ~hpDviEIdA----as~-~gVDdIRe-Lie~~~---------------~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDA----ASN-RGVDEMAQ-LLDKAV---------------YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecc----ccc-CCHHHHHH-HHHHHH---------------hchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 00011100 000 12222211 111100 00113456689999998764 4667776665
Q ss_pred CCCCCCeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 315 QYGPGSRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 315 ~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
......++|++|.+ ..+....... ...+.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-.
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSR-Cq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSR-CLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHH-HHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 54556666655554 4443222111 1679999999999998888765322211 12334577899999988633
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=6.8e-05 Score=89.94 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=106.9
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 241 (1243)
...+.+||-+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45677999999999999988653 234567899999999999999999865421 1111
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+.. ... .++.++ ++++..+. .....+++-++|+|+++... ..+.++..+......
T Consensus 91 ieida----as~-~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEIDA----ASR-TGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEeec----ccc-cCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 11100 000 222222 11211110 01123566799999997653 466666655544456
Q ss_pred CeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-hHHHH
Q 000874 320 SRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL-VLKVL 392 (1243)
Q Consensus 320 srIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL-al~~~ 392 (1243)
+++|++|.+. .+...... ...++++++++.++..+.+...+-..+. .-..+....|++.++|-+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666555443 33322211 1178999999999988777765422211 1223345678888888553 44333
No 89
>PRK04195 replication factor C large subunit; Provisional
Probab=98.00 E-value=6.5e-05 Score=90.91 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=106.2
Q ss_pred CCCCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
|...+.++|.+..++++..|+..-. +...+.+.|+|++|+||||+|+++++++. |+.. .+ +. +.. ... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-na---sd~-r~~-~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-NA---SDQ-RTA-DV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-cc---ccc-ccH-HH
Confidence 3445679999999999999986421 12367899999999999999999999763 2221 11 11 111 111 22
Q ss_pred HHHHHHhhhcccccccCCCccHHHHHhhc-CceEEEEEecCCChhh------hHHHhcCCCCCCCCCeEEEEecccchhc
Q 000874 261 QKQMLSTILSEKLEVAGPNIPQFTKERVR-RMKVLIVLDDVNKVGQ------LEGLIGGLDQYGPGSRIVVTTRDKGVLE 333 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gsrIIiTTR~~~v~~ 333 (1243)
...++...... ..+. .++-+||+|+++.... +..+...+. ..+..||+|+.+..-..
T Consensus 81 i~~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 22222221100 0111 3677999999976532 444443332 23445677665432111
Q ss_pred --ccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 334 --KFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 334 --~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
... .....+++.+++.++....+...+......- ..+....|++.++|-.-++
T Consensus 145 ~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LRELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 111 1126789999999999888887764332211 2356788888888865543
No 90
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=7.8e-05 Score=88.62 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=106.6
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc----cC-----------------ce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FE-----------------GR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 241 (1243)
...+.+||.+.-.+.|...+..+ .-...+.++|++|+||||+|+.+++.+... +. ..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 45677999988888888877653 223567899999999999999999865321 00 11
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+. . +.. .++..+. ++...... ....+++-++|+|+++... +.+.++..+....+.
T Consensus 89 ~el~---a-a~~-~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELD---A-ASN-RGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEe---C-ccc-CCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 1111 0 001 2333322 22211100 0123466799999997653 355565555433344
Q ss_pred CeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chhHHHHhh
Q 000874 320 SRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN-PLVLKVLGS 394 (1243)
Q Consensus 320 srIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl-PLal~~~g~ 394 (1243)
..+|++|.+ ..+....... ...+++.+++.++....+...+..... .-..+....|+++++|- +.|+..+-.
T Consensus 148 vv~Ilattn~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 454444443 3333332221 268999999999988888877643221 11234566778777654 556555543
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.99 E-value=4.7e-05 Score=82.21 Aligned_cols=147 Identities=15% Similarity=0.299 Sum_probs=85.7
Q ss_pred CCcccchhhHHh---HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 186 NGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
++.||-+.-+-+ |.+++.. +...-+.+||++|.||||||+.+...-+.+= ..|+.. +.......+++.+.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel-SAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL-SATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE-eccccchHHHHHHHH
Confidence 445555443322 3334433 5677788999999999999999998654431 234432 111111123333333
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCC--hhhhHHHhcCCCCCCCCCeEEE--EecccchhcccC-C
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNK--VGQLEGLIGGLDQYGPGSRIVV--TTRDKGVLEKFG-V 337 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v~~~~~-~ 337 (1243)
+-- -...+.++|.+|.+|.|.. ..|-+.+++. ...|+-++| ||.++..--... .
T Consensus 212 ~aq------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 212 QAQ------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHH------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHH
Confidence 211 1233567899999999953 3444444433 456776665 777665311100 1
Q ss_pred CcceEEecCCCCHHHHHHHHHH
Q 000874 338 EEEKIYGVNGLEFDEAFELFCN 359 (1243)
Q Consensus 338 ~~~~~~~v~~L~~~ea~~Lf~~ 359 (1243)
....++.++.|+.++-..++.+
T Consensus 271 SRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hccceeEeccCCHHHHHHHHHH
Confidence 1116899999999999988877
No 92
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.98 E-value=6.7e-05 Score=86.37 Aligned_cols=183 Identities=14% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
...++++|++..++.+..++..+ ..+.+.++|..|+||||+|+.+++..........++.. .. +.. .+...+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~~-~~~-~~~~~~~~ 87 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-NA-SDE-RGIDVIRN 87 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-cc-ccc-cchHHHHH
Confidence 34567999999999999998653 34457999999999999999999976433211112211 00 111 12222222
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEeccc-chhcccCCCc
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLEKFGVEE 339 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~ 339 (1243)
.+ ..+.... + .-...+-++|+|+++... ....+...+....+.+++|+++... .+...... .
T Consensus 88 ~i-~~~~~~~-~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s-r 152 (319)
T PRK00440 88 KI-KEFARTA-P------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS-R 152 (319)
T ss_pred HH-HHHHhcC-C------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-H
Confidence 11 1111000 0 001235689999987553 2444444444445567777776432 22221111 1
Q ss_pred ceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 340 EKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 340 ~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
...+++++++.++....+...+-..... -..+....+++.++|.+--
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 1578999999999988888776433221 1234567888888887654
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=8.7e-05 Score=89.86 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=105.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------Cce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 241 (1243)
...+.+||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-..- ...
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 45678999999999999998763 2346789999999999999999988643211 000
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~g 319 (1243)
+.+.. ... .++..+.+ ++.... ..-..+++-++|+|+++.... ...++..+......
T Consensus 91 lEida----As~-~gVd~IRe-lle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDA----ASN-TGIDNIRE-VLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEec----ccc-CCHHHHHH-HHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 11100 000 12211111 111100 000124566899999987543 44455444333455
Q ss_pred CeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 320 SRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 320 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
+++|++|.+.. +..... .....+.++.++.++..+.+.+.+-..+.. -..+....|++.++|.+.-
T Consensus 150 v~fILaTtd~~kL~~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 150 VKFILATTDPHKVPVTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred cEEEEEeCCccccchHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHH
Confidence 67777775543 221111 111568888999999988888766432211 1234567888888887753
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00018 Score=85.53 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=98.1
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccC--ceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFE--GRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
..-+.|+|..|.|||+|++++.+.+..... .++|+. ..++...+...+.... ...+.+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 345889999999999999999997664332 233432 2345555555443211 111224444
Q ss_pred hcCceEEEEEecCCChh---h-hHHHhcCCCCC-CCCCeEEEEecccc---------hhcccCCCcceEEecCCCCHHHH
Q 000874 288 VRRMKVLIVLDDVNKVG---Q-LEGLIGGLDQY-GPGSRIVVTTRDKG---------VLEKFGVEEEKIYGVNGLEFDEA 353 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~~-~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea 353 (1243)
++. .-+|||||+.... . .+.+...+... ..|..||+|+.... +...+... -++++++++.++.
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r 280 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTA 280 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHH
Confidence 443 4478899996432 1 22332222211 34557888865331 22222222 6788999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhh
Q 000874 354 FELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGS 394 (1243)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~ 394 (1243)
.+++.+++-.......-..+...-|+..++|.|-.+..+..
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99999887432211123356778889999999877665543
No 95
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=4.4e-05 Score=82.04 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=80.9
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
.+.+.|||..|+|||+|+++++.... ..|+.. ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 46689999999999999999887532 224421 1111111111 11
Q ss_pred CceEEEEEecCCCh----hhhHHHhcCCCCCCCCCeEEEEecc---------cchhcccCCCcceEEecCCCCHHHHHHH
Q 000874 290 RMKVLIVLDDVNKV----GQLEGLIGGLDQYGPGSRIVVTTRD---------KGVLEKFGVEEEKIYGVNGLEFDEAFEL 356 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~----~~~~~l~~~~~~~~~gsrIIiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~ea~~L 356 (1243)
. -+|++||++.. +.+-.+..... ..|..||+|++. +++...+... .++++++++.++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHH
Confidence 1 27888999543 22222222211 346779998873 3333333333 7899999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 357 FCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 357 f~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
+.+++-... -.--+++..-|++.+.|..-++.
T Consensus 162 L~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 162 IFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHH
Confidence 998874321 11223455666666666555444
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=8.3e-05 Score=86.24 Aligned_cols=179 Identities=11% Similarity=0.133 Sum_probs=105.5
Q ss_pred CCcccchhhHHhHHHhhccCCC-------CCeEEEEEEecCCchhHHHHHHHHHHHhccc--------------------
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLS-------DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-------------------- 238 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 238 (1243)
+.++|-+.-++.|.+++..+.. .-.+.+.++|+.|+||||+|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688988888889988876420 1346688999999999999999988653321
Q ss_pred CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCC
Q 000874 239 EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQY 316 (1243)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~ 316 (1243)
+...++.. .... .++.++. .+...+.. ....+++-++|+|+++... ....++..+...
T Consensus 85 pD~~~i~~---~~~~-i~i~~iR-~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAP---EGLS-IGVDEVR-ELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecc---cccc-CCHHHHH-HHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11111110 0000 1222221 11111110 0112445578889997653 344455544444
Q ss_pred CCCCeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 317 GPGSRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 317 ~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.++..+|++|.+. .+....... ...+.++.++.++..+.+.... + . + .+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSR-c~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSR-CRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhh-CeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5567777766654 333232211 2689999999999998887532 1 1 1 344678899999998754443
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=6.4e-06 Score=68.40 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=25.0
Q ss_pred cceecccCCccccccc-ccccCCcceEEecccCcccccccccccccCccceeecccc
Q 000874 695 ITRLYLSQSAIEEVPS-SIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDC 750 (1243)
Q Consensus 695 L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~ 750 (1243)
|+.|++++|.++.+|. .+..+++|++|++++|.+...-|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444443 3344444444444444443333334444444444444444
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=9e-05 Score=77.81 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=94.0
Q ss_pred hHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCceEEEeeccccccCCC
Q 000874 197 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGRCFMSDVRRNSETGG 255 (1243)
Q Consensus 197 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~~ 255 (1243)
.+.+.+..+ .-...+.++|+.|+||||+|+.+...+-.. +....++.. .... .
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~-~ 76 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQS-I 76 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCc-C
Confidence 344445432 223678899999999999999999876432 111112110 0001 1
Q ss_pred ChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEeccc-chh
Q 000874 256 GLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDK-GVL 332 (1243)
Q Consensus 256 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~ 332 (1243)
++..+. ++...+.. ....+.+-++|+|+++... ..+.++..+....+.+.+|++|++. .+.
T Consensus 77 ~~~~i~-~i~~~~~~---------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 77 KVDQVR-ELVEFLSR---------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred CHHHHH-HHHHHHcc---------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 222221 12221110 0112456689999997653 3566666665555667777777654 332
Q ss_pred cccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 333 EKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 333 ~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
..... ....+++.+++.++..+.+.... .. .+.+..++..++|.|.
T Consensus 141 ~~i~s-r~~~~~~~~~~~~~~~~~l~~~g-----i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 141 PTIRS-RCQVLPFPPLSEEALLQWLIRQG-----IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHh-hcEEeeCCCCCHHHHHHHHHHcC-----CC---HHHHHHHHHHcCCCcc
Confidence 22211 12689999999999998887761 11 3557889999999875
No 99
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=2e-07 Score=108.16 Aligned_cols=127 Identities=22% Similarity=0.144 Sum_probs=93.5
Q ss_pred ccceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccc
Q 000874 694 KITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLER 773 (1243)
Q Consensus 694 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 773 (1243)
.|...+.++|.+..+..++.-++.|+.|||++|+....- .+..++.|++|+|+.|......--....+. |..|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 345567778888888888888899999999998866553 567788999999998776543322333444 88899999
Q ss_pred cCccccCcccccccCCcEEeecCCCCCCcCC-CccCCCCCCcEEEccCCCCc
Q 000874 774 TAITELPSSFENLLGLEFLTVSGCSKLDKLP-DNIGNLKSLDFIAAVGSAIS 824 (1243)
Q Consensus 774 n~l~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~i~ 824 (1243)
|.++++-. +.+|.+|+.|++++|-+.+.-. ..++.|..|..|++.||.+-
T Consensus 242 N~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 98888753 7888899999998876554221 23556777888888888765
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.94 E-value=0.00012 Score=79.65 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=87.8
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE 274 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~ 274 (1243)
+..+..+... ...+.+.|+|+.|+|||+||+++++....+-..+.|+.. ... ......
T Consensus 33 ~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~-------~~~~~~----------- 90 (235)
T PRK08084 33 LAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKR-------AWFVPE----------- 90 (235)
T ss_pred HHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHH-------hhhhHH-----------
Confidence 3444444432 334678999999999999999999977655444555531 100 000000
Q ss_pred ccCCCccHHHHHhhcCceEEEEEecCCCh---hhhHHHh-cCCCCC-CCC-CeEEEEecccc---------hhcccCCCc
Q 000874 275 VAGPNIPQFTKERVRRMKVLIVLDDVNKV---GQLEGLI-GGLDQY-GPG-SRIVVTTRDKG---------VLEKFGVEE 339 (1243)
Q Consensus 275 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~-~~~~~~-~~g-srIIiTTR~~~---------v~~~~~~~~ 339 (1243)
+.+.+.. --+|++||++.. .+|+..+ ..+... ..| .++|+||+... +...+...
T Consensus 91 ---------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g- 159 (235)
T PRK08084 91 ---------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG- 159 (235)
T ss_pred ---------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-
Confidence 1111111 137899999653 2343221 111111 123 37999987542 22333322
Q ss_pred ceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 340 EKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 340 ~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.+++++++++++-.+++.+++.... -.--+++..-+++.+.|..-+
T Consensus 160 -~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 160 -QIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred -ceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHH
Confidence 6899999999999999887664321 112234556666666655433
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00013 Score=86.96 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=109.3
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccC-------ceEEEee--------
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE-------GRCFMSD-------- 246 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~-------- 246 (1243)
|....++||-+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+-..-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 345678999999999888877653 23467889999999999999999986532110 0011100
Q ss_pred ----cccc-ccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCC
Q 000874 247 ----VRRN-SETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPG 319 (1243)
Q Consensus 247 ----~~~~-~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 319 (1243)
+.+. .....++.++.. ++.... .....+++-++|+|+++.. ..+..+...+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 0000 000022222222 111110 0112356678999999875 3477776665544556
Q ss_pred CeEEE-EecccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 320 SRIVV-TTRDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 320 srIIi-TTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
+.+|+ ||+.+.+....... ...+++.+++.++..+.+...+-..+.. -..+....|++.++|.+-
T Consensus 159 ~vfI~aTte~~kI~~tI~SR-c~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISR-CQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred EEEEEEeCChHHhhHHHHhc-ceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66654 44544444333221 1679999999999999998887433221 123345678888888764
No 102
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.93 E-value=0.00013 Score=75.82 Aligned_cols=177 Identities=18% Similarity=0.200 Sum_probs=95.3
Q ss_pred CCCCCCcccchhhHHhHHHhhccC--CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
|...+++||-+.-+..+.-++... ..+...-+-+||++|+||||||+.+++.....|. +... ... ....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg--~~i---~k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG--PAI---EKAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC--CC-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc--hhh---hhHHH
Confidence 346788999999888877665432 1245677889999999999999999998877663 1110 000 11122
Q ss_pred HHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCC--------CCCCCC---------
Q 000874 260 LQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLD--------QYGPGS--------- 320 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~--------~~~~gs--------- 320 (1243)
+... + ..++ ++-+|.+|.+.... +-+.+.+... ..++++
T Consensus 92 l~~i-l--------------------~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LAAI-L--------------------TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HHHH-H--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HHHH-H--------------------HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 2221 1 1122 34467779986542 2222222111 112222
Q ss_pred --eEEEEecccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 321 --RIVVTTRDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 321 --rIIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
-|=-|||...+...+.-.=.-+.+++..+.+|-.++..+.+-.-+ -+-..+.+.+|++++.|-|--..
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHH
Confidence 344688876654433221114578999999999999988764322 23345678999999999997443
No 103
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=4.7e-07 Score=99.45 Aligned_cols=209 Identities=18% Similarity=0.219 Sum_probs=113.7
Q ss_pred cCCcceEEecccCccccc--ccccccccCccceeecccccCcCc--CchhhhcCCcccEeeccccC-ccccC--cccccc
Q 000874 714 CLTDLVELDLRDCKRLKR--ISTRFCKLKSLVKLCLDDCLNLER--FPEILEEMEHLKRIYLERTA-ITELP--SSFENL 786 (1243)
Q Consensus 714 ~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~n~-l~~lp--~~l~~l 786 (1243)
.+++|++|+++.|..... +...+.+++.|+.+.+.||...+. +-..-+.+.-+..+++..+. ++... ..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 356666677766654333 112233455566666666654331 11111223334445544432 12111 111345
Q ss_pred cCCcEEeecCCCCCCcCC--CccCCCCCCcEEEccCCC-CccC--CccccCCCCCcEEEeccCCCCCCCChh-hccCCCC
Q 000874 787 LGLEFLTVSGCSKLDKLP--DNIGNLKSLDFIAAVGSA-ISQL--PSSVADSNVLRMLFFCRCRRLLSLPRL-LLSGLSS 860 (1243)
Q Consensus 787 ~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~-i~~l--~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~l~~ 860 (1243)
..|+.|..++|...+..+ .-..+..+|+.|.+.+|. ++.. ...-.+++.|+.+++..|....+.... .-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 667777777766543322 122355677777777664 2211 122245667777777777655443111 1236788
Q ss_pred CcEEEeccCCCC-C-----cchhhcCCCCCCEEeCcCCCCc--ccchhccCCCCCCEEeecCCCCCCcCC
Q 000874 861 LKFLYISDCAVT-E-----IPQDIACLSSLTTLNLSGNNFE--SLPASIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 861 L~~L~Ls~~~l~-~-----lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
|+.|.|++|.+. + +...-..+..|..|.|+++... ..-..+..+++|+.+++-+|+....-+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 888888888654 2 1233355677888888888665 333456778899999998888655433
No 104
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=6.1e-05 Score=87.85 Aligned_cols=183 Identities=12% Similarity=0.092 Sum_probs=106.5
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccC---ceEEEeec------------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE---GRCFMSDV------------ 247 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~------------ 247 (1243)
...+.+||-+.-+..|..++..+. -...+.++|+.|+||||+|+.+++.+-..-. ..|..+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 456779999999999999887632 2346789999999999999999986543210 00111000
Q ss_pred ccc-ccCCCChHHHHHHHHHhhhcccccccCCCccHHHH-HhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEE
Q 000874 248 RRN-SETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTK-ERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIV 323 (1243)
Q Consensus 248 ~~~-~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrII 323 (1243)
.+. .....++..+. ++.. .+. ....++.-++|+|+++... .+..++..+........+|
T Consensus 93 iEIdaas~~gVd~IR-eL~e----------------~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFI 155 (484)
T PRK14956 93 LEIDAASNRGIENIR-ELRD----------------NVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFI 155 (484)
T ss_pred eeechhhcccHHHHH-HHHH----------------HHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEE
Confidence 000 00001111111 1111 111 1123566799999998653 4777766665434455555
Q ss_pred EEec-ccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 324 VTTR-DKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 324 iTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
++|. ...+....... ...|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+-
T Consensus 156 LaTte~~kI~~TI~SR-Cq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 156 LATTEFHKIPETILSR-CQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred eecCChhhccHHHHhh-hheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 4444 34443332221 167999999999988888776533221 1224456889999999875
No 105
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.90 E-value=0.00014 Score=85.17 Aligned_cols=185 Identities=11% Similarity=0.127 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc----cC-----------------c
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FE-----------------G 240 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 240 (1243)
|...+.+||.+..++.+.+++..+ .-...+-++|+.|+||||+|+.++..+... +. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345677899999999999988653 234577899999999999999999875422 11 0
Q ss_pred eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCC
Q 000874 241 RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGP 318 (1243)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 318 (1243)
..++.. ... ....+ .+++...+.. ....+++-++|+|+++.. .....+...+....+
T Consensus 88 ~~~~~~----~~~-~~~~~-~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 88 VIEIDA----ASN-NGVDD-IREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred EEEeec----ccc-CCHHH-HHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 111110 000 11111 1122222110 001234558899998765 335566555544455
Q ss_pred CCeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 319 GSRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 319 gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.+.+|++|.+.. +....... ...++.++++.++..+.+...+-.....- -.+.+..+++.++|.|..+...
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHH
Confidence 677777765443 22222111 15788999999999888887664332211 1355778888999988755444
No 106
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=4.2e-06 Score=87.86 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=99.8
Q ss_pred CCcceEEecccCcccc--cccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCcc--ccCcccccccCCc
Q 000874 715 LTDLVELDLRDCKRLK--RISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAIT--ELPSSFENLLGLE 790 (1243)
Q Consensus 715 l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~ 790 (1243)
.+.++.|||.+|.+.. .+..-+.+||.|+.|+|+.|+....+-..-..+.+|+.|-|.++.+. ...+.+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555554322 12222334555555555555443322111123456666666666543 4455566677777
Q ss_pred EEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChh-hccCCCCCcEEEeccC
Q 000874 791 FLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRL-LLSGLSSLKFLYISDC 869 (1243)
Q Consensus 791 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~l~~L~~L~Ls~~ 869 (1243)
.|+++.|+. +.+.+..+.+.... +.+++|.+..|....-.... .-.-+|++..+-+..|
T Consensus 150 elHmS~N~~--------------rq~n~Dd~c~e~~s------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 150 ELHMSDNSL--------------RQLNLDDNCIEDWS------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hhhhccchh--------------hhhccccccccccc------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 777766532 22222222222211 12333333333211100000 1123677777888888
Q ss_pred CCCCc--chhhcCCCCCCEEeCcCCCCcccch--hccCCCCCCEEeecCCCCCCcCC
Q 000874 870 AVTEI--PQDIACLSSLTTLNLSGNNFESLPA--SIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 870 ~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
.+.+. -.....++.+--|+|+.|+|.+..+ .+..++.|..|.+++++....+.
T Consensus 210 PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 77653 2334556777788888888885543 67888999999999999877765
No 107
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00015 Score=88.50 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=107.4
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------Cce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 241 (1243)
...+.+||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-... ...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 456789999999999999887532 235578999999999999999998654321 001
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+. . ... .++.++ ++++..+. .....+++-++|+|+++... ....|+..+......
T Consensus 91 ieid---a-as~-~~Vddi-R~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEID---A-ASR-TKVEDT-RELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eeec---c-ccc-CCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 1110 0 000 112221 11211110 11124567789999997654 456665554444455
Q ss_pred CeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 320 SRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 320 srIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.++|++|.+. .+....... ...|.++.++.++..+.+.+.+-.... ....+....|++.++|.+--
T Consensus 150 v~FIL~Tt~~~kLl~TI~SR-C~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSR-CLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRD 216 (647)
T ss_pred eEEEEecCCccccchHHHhh-heEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 6666555544 343222111 278999999999999888876522221 11234457788999997763
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=6.8e-05 Score=87.76 Aligned_cols=174 Identities=17% Similarity=0.282 Sum_probs=98.2
Q ss_pred CCCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccccc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSE 252 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 252 (1243)
...+.+.|++..++++.+.+...- -...+-|.++|++|.|||++|++++++....| +....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~---- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG---- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeeh----
Confidence 344578999999999888663210 13356688999999999999999999765432 21100
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCCcc-HHHHHhhcCceEEEEEecCCChh------------h----hHHHhcCCCC
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPNIP-QFTKERVRRMKVLIVLDDVNKVG------------Q----LEGLIGGLDQ 315 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~ 315 (1243)
..+..... + ...... ..+...-...+.+|+|||++... . +..+...+..
T Consensus 199 -----~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 -----SELVQKFI---G------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -----HHHhHhhc---c------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 01111000 0 000010 11111123456899999997531 1 2223322222
Q ss_pred C--CCCCeEEEEecccchhccc-----CCCcceEEecCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCC
Q 000874 316 Y--GPGSRIVVTTRDKGVLEKF-----GVEEEKIYGVNGLEFDEAFELFCNFAFEENHCP-EDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 316 ~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~gl 385 (1243)
. ..+.+||.||......... ..+ ..++++..+.++..++|..++.+..... .. ...+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd--~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFD--RIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCc--eEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2 2355677777654432221 233 6799999999999999998875433222 22 34555566664
No 109
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00023 Score=81.74 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=122.7
Q ss_pred CCCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~ 259 (1243)
..++.+.+|+.+++++...|..-- +....-+.|+|..|.|||+.++.+++++...... .+++.+... ....+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-----~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-----RTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-----CCHHH
Confidence 344569999999999988775421 1223348999999999999999999987766433 466643222 56667
Q ss_pred HHHHHHHhhhcc-cccccCCCccHHHHHhhc--CceEEEEEecCCChhh-----hHHHhcCCCCCCCCCeEEE--Eeccc
Q 000874 260 LQKQMLSTILSE-KLEVAGPNIPQFTKERVR--RMKVLIVLDDVNKVGQ-----LEGLIGGLDQYGPGSRIVV--TTRDK 329 (1243)
Q Consensus 260 l~~~ll~~l~~~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIIi--TTR~~ 329 (1243)
+..+++.+++.. .......+..+.+.+.+. ++.+++|||+++.... +-.|....... .++|+| .+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 888888876521 111222333355555554 5789999999976532 33443332222 454433 34333
Q ss_pred chh--------cccCCCcceEEecCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCC-CchhHHHH
Q 000874 330 GVL--------EKFGVEEEKIYGVNGLEFDEAFELFCNFA---FEENHCPEDLNWHSRRVVWYATS-NPLVLKVL 392 (1243)
Q Consensus 330 ~v~--------~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~g-lPLal~~~ 392 (1243)
.+. ..++. ..+..++-+.+|-.+.+..++ |......+...+++..++.+-+| .-.|+..+
T Consensus 167 ~~~~~ld~rv~s~l~~---~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 167 KFLDYLDPRVKSSLGP---SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHhhhhhhhccCc---ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 322 22332 346778888888888887664 45555566666666666666665 34455444
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.87 E-value=9.5e-05 Score=79.16 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTK 285 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 285 (1243)
.....+.|+|..|+|||.|.+++++++....+. ++|+. ..++...+...+.... ...++
T Consensus 32 ~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~~--------~~~~~ 92 (219)
T PF00308_consen 32 ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDGE--------IEEFK 92 (219)
T ss_dssp TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHccc--------chhhh
Confidence 334457899999999999999999987765432 34442 3345555554443311 22355
Q ss_pred HhhcCceEEEEEecCCChhh---hHH-HhcCCCCC-CCCCeEEEEecccc-hh--------cccCCCcceEEecCCCCHH
Q 000874 286 ERVRRMKVLIVLDDVNKVGQ---LEG-LIGGLDQY-GPGSRIVVTTRDKG-VL--------EKFGVEEEKIYGVNGLEFD 351 (1243)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~-~~gsrIIiTTR~~~-v~--------~~~~~~~~~~~~v~~L~~~ 351 (1243)
+.++. -=+|++|||+.... |+. +...+... ..|-+||+|++... -. ..+.. ..++++++++++
T Consensus 93 ~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 93 DRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDE 169 (219)
T ss_dssp HHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HH
T ss_pred hhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHH
Confidence 66664 34788999965432 222 22211111 35678999996432 11 11222 268999999999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000874 352 EAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 352 ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
+..+++.+.|-..... --++++.-+++.+.+.
T Consensus 170 ~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE--LPEEVIEYLARRFRRD 201 (219)
T ss_dssp HHHHHHHHHHHHTT----S-HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCC
Confidence 9999998887432211 2233444455544443
No 111
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00014 Score=83.21 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=112.3
Q ss_pred CCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc----cCceEEEeeccccccCCCC
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FEGRCFMSDVRRNSETGGG 256 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~ 256 (1243)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... . . .+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~----~-~---~~ 87 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA----D-P---DP 87 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC----C-C---CC
Confidence 4556778999999999999998764 345578899999999999999999976442 1110000 0 0 10
Q ss_pred hHHHHHHHHHh-------hhcc-ccc---ccC-C--CccHHHHHhh-----cCceEEEEEecCCChhh--hHHHhcCCCC
Q 000874 257 LEHLQKQMLST-------ILSE-KLE---VAG-P--NIPQFTKERV-----RRMKVLIVLDDVNKVGQ--LEGLIGGLDQ 315 (1243)
Q Consensus 257 l~~l~~~ll~~-------l~~~-~~~---~~~-~--~~~~~l~~~L-----~~kr~LlVLDdv~~~~~--~~~l~~~~~~ 315 (1243)
-....+.+... +... +.. ... . +....+.+.+ .+++-++|+|+++.... ...++..+..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 11111222111 0000 000 000 0 0011222222 34567899999986543 4445444433
Q ss_pred CCCCCeEEEEe-cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 000874 316 YGPGSRIVVTT-RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLG 393 (1243)
Q Consensus 316 ~~~gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g 393 (1243)
......+|++| +...+........ ..+.+.+++.++..+++...+.... -..+....+++.++|.|.....+.
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33445544444 4434433332222 6899999999999999987432111 113446788999999998655443
No 112
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=4.5e-07 Score=105.43 Aligned_cols=178 Identities=24% Similarity=0.250 Sum_probs=114.0
Q ss_pred ccccccCCcceEEecccCccccccccccccc-CccceeecccccCcCcCchhhhc----------CCcccEeeccccCcc
Q 000874 709 PSSIECLTDLVELDLRDCKRLKRISTRFCKL-KSLVKLCLDDCLNLERFPEILEE----------MEHLKRIYLERTAIT 777 (1243)
Q Consensus 709 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l-~~L~~L~L~~~~~~~~~p~~l~~----------l~~L~~L~L~~n~l~ 777 (1243)
|-+|..+.+|+.|.|++|.+... ..+..+ ..|++|...+ .+..+-+.+.. -..|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 55777889999999999886542 111111 1344443222 11111111110 124777788889999
Q ss_pred ccCcccccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccC
Q 000874 778 ELPSSFENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSG 857 (1243)
Q Consensus 778 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 857 (1243)
.+..++.-++.|+.|+|+.|.+...- .+..|+.|++||++.|.+..+|..-..--.|+.|.+++|. ++.+-. +.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g--ie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG--IEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--HHh
Confidence 88888999999999999999877654 6788999999999999988887643333337777776665 233322 456
Q ss_pred CCCCcEEEeccCCCCCcc--hhhcCCCCCCEEeCcCCCCc
Q 000874 858 LSSLKFLYISDCAVTEIP--QDIACLSSLTTLNLSGNNFE 895 (1243)
Q Consensus 858 l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 895 (1243)
+.+|+.||+++|-+.+.. ..+..+.+|+.|.|.||.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 677777777777665421 23455667777777777654
No 113
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.86 E-value=0.00012 Score=79.44 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCCcc-cchhhH-HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 185 SNGLV-GLNSRI-EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 185 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
.++|+ |..... ..+.++.... ...+.+.|+|..|+|||+||+++++.....-....++... .+..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~--~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-----------~~~~ 83 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGP--VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-----------SPLL 83 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-----------HhHH
Confidence 34555 544433 4444444321 3456788999999999999999999764332233444310 0100
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCC-CCCC-eEEEEecccchhccc---
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQY-GPGS-RIVVTTRDKGVLEKF--- 335 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs-rIIiTTR~~~v~~~~--- 335 (1243)
.+ .. ....-+||+||++... +-+.+...+... ..+. .||+|++........
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 00 1123478899996542 222232222111 2344 366666643221111
Q ss_pred ---CCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhhh
Q 000874 336 ---GVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSS 395 (1243)
Q Consensus 336 ---~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~~ 395 (1243)
.......++++++++++-.+++...+-... ..-..+....+++...|.+..+..+-..
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 011116899999999887777765432211 1122345677777888888876655543
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=5e-06 Score=87.31 Aligned_cols=202 Identities=16% Similarity=0.116 Sum_probs=117.8
Q ss_pred EEEecCCCCCCCCCC--C--cccccceecccccccccc---cccccccccccccccCCCcccccCCCC-CCCCCccEEec
Q 000874 596 YLHWYKYPLRTLPSN--F--KPKNIVELSLRFSKVEQI---WEGKKKAFKLKSIDLSHSEHLIRIPDL-SEIPNLERIYL 667 (1243)
Q Consensus 596 ~L~l~~~~l~~lp~~--~--~~~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L~L 667 (1243)
.|.+.++.+.+.-.. + ...++++|+|.+|.|..- .....++|.|++|+|+.|.+...+..+ ..+.||+.|.|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 444445544433222 1 467888888888888743 334568899999999999887776665 36778999998
Q ss_pred cCCcCCC-cCCCcccCCCCcccccccc-ccceecccCCcccccccccccCCcceEEecccCcccccc--cccccccCccc
Q 000874 668 SNCTNLV-HVPASIQNFKYLKFPQISG-KITRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRI--STRFCKLKSLV 743 (1243)
Q Consensus 668 ~~~~~l~-~~p~~i~~L~~L~~l~~~~-~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l--p~~~~~l~~L~ 743 (1243)
.|...-. .....+..++.++.+.++. +++.+++..+.++.... .+++|.+..|....-. -.--.-++++.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~------~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST------EVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccch------hhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 8753221 2233445555555555543 35556666666554432 3334444444311100 00001255666
Q ss_pred eeecccccCcC-cCchhhhcCCcccEeeccccCccccCc--ccccccCCcEEeecCCCCCCcC
Q 000874 744 KLCLDDCLNLE-RFPEILEEMEHLKRIYLERTAITELPS--SFENLLGLEFLTVSGCSKLDKL 803 (1243)
Q Consensus 744 ~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~~~~~~~l 803 (1243)
.+.+..|.+.. .-.+.++.++.+..|+|+.|+|....+ .+..+++|..|.++++++.+.+
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 66666665432 223345556667778888887775433 3667778888888887766544
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00022 Score=84.37 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=108.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 241 (1243)
...+++||-+.-++.+.+.+..+. -...+.++|+.|+||||+|+.++..+-.. +..+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 456789999998998988887642 24578899999999999999998754211 1112
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+.. +.. .++.++.. ++..... .-..+++-++|+|+++... ..+.+...+....+.
T Consensus 88 ~eida----as~-~~vddIR~-Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDA----ASN-TSVDDIKV-ILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEec----ccC-CCHHHHHH-HHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 22211 111 33333332 2221110 0012456689999997653 355666555545566
Q ss_pred CeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 320 SRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 320 srIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
+++|++|.+ +.+....... ...++++.++.++..+.+...+-..+.. -..+....|++.++|.+-
T Consensus 147 v~fIlatte~~Kl~~tI~SR-c~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISR-CQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMR 212 (491)
T ss_pred eEEEEEeCChHHHHHHHHHh-heeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 777766643 3443322111 1689999999999998888876433221 123346678888888764
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=8.8e-05 Score=87.26 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=106.5
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc--cCceEEEeeccccccCCCChHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--FEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
|...+.++|-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+... .....|....... .+.-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~ 85 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECE 85 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCH
Confidence 345678999998888898888753 223457899999999999999999876432 1000010000000 00000
Q ss_pred HHHHHHHhhhcccccccC-----CCccHHHHHhh-----cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEe-
Q 000874 260 LQKQMLSTILSEKLEVAG-----PNIPQFTKERV-----RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTT- 326 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTT- 326 (1243)
--+.+.......-...++ .+....+.+.+ .+++-++|+|+++... .++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 111111000000000000 00001111222 3456688999997653 4666666655555667766655
Q ss_pred cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 327 RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 327 R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
+...+...... ....++++++++++..+.+...+-... ..-..+.+..++..++|.+-
T Consensus 166 ~~~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 166 ELHKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred ChHHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 33334322211 115788999999998888776652211 11224557888999999765
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=97.82 E-value=0.00025 Score=76.96 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=83.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
...+.|+|..|+|||.||+++++.+..+-..++|+.. .++.... ..+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----------~~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----------AELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----------HHHHhhh-----------------HHHHHhhh
Confidence 3678999999999999999999877655445566641 1111110 11333333
Q ss_pred CceEEEEEecCCCh---hhhHH-HhcCCCCC-CCCCeEEEEecccc--h-------hcccCCCcceEEecCCCCHHHHHH
Q 000874 290 RMKVLIVLDDVNKV---GQLEG-LIGGLDQY-GPGSRIVVTTRDKG--V-------LEKFGVEEEKIYGVNGLEFDEAFE 355 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~---~~~~~-l~~~~~~~-~~gsrIIiTTR~~~--v-------~~~~~~~~~~~~~v~~L~~~ea~~ 355 (1243)
+-. +||+||+... .+|+. +...+... ..|.+||+|++... . ...++.. .+++++++++++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHH
Confidence 323 6788999633 23432 33222211 34678888887432 1 1112222 678999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 356 LFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 356 Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
++..++...... --.++..-+++.+.|-.-
T Consensus 174 il~~ka~~~~~~--l~~ev~~~L~~~~~~d~r 203 (234)
T PRK05642 174 ALQLRASRRGLH--LTDEVGHFILTRGTRSMS 203 (234)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhcCCCHH
Confidence 988666432211 113445556666655543
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00036 Score=84.95 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=105.7
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc----cCceEEEeeccccccCCCChH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FEGRCFMSDVRRNSETGGGLE 258 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~l~ 258 (1243)
...+++||-+.-++.|.+++..+ .-...+-++|..|+||||+|+.+++.+-.. ..+... ...+..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~---------~pCg~C 81 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA---------TPCGVC 81 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC---------CCCCcc
Confidence 45678999888888899988764 234677899999999999999998865321 000000 000111
Q ss_pred HHHHHHHHhhhcccccccCC--CccHHHHHhh--------cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEe
Q 000874 259 HLQKQMLSTILSEKLEVAGP--NIPQFTKERV--------RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTT 326 (1243)
Q Consensus 259 ~l~~~ll~~l~~~~~~~~~~--~~~~~l~~~L--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTT 326 (1243)
.-.+.+...-..+-...+.. .-.+.+++.+ .++.-++|||+|+... ....++..+.......++|++|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 11111100000000000000 0001111111 2345588999998764 3666666555444556666665
Q ss_pred cc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 327 RD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 327 R~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.+ ..+...... ....++++.++.++..+.+...+-..+.. -..+....|++.++|-+--
T Consensus 162 td~~kil~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 162 TDPQKVPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRD 221 (618)
T ss_pred CCchhhhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 44 333322111 11789999999999988888765332221 1234567788888887643
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00022 Score=83.57 Aligned_cols=181 Identities=12% Similarity=0.164 Sum_probs=105.6
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc--------cCceEEEeeccccccC
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--------FEGRCFMSDVRRNSET 253 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~ 253 (1243)
|...+.++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+... |...++-. .. ...
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccC
Confidence 345677899999999999998753 234678899999999999999998876431 22222111 00 011
Q ss_pred CCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEec-ccc
Q 000874 254 GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTR-DKG 330 (1243)
Q Consensus 254 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR-~~~ 330 (1243)
.++..+. ++..++... ...+++-++|+|+++... .+..+...+......+.+|++|. ...
T Consensus 88 -~~~~~i~-~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 88 -NSVDDIR-NLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred -CCHHHHH-HHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 2222222 222211100 112345579999997543 35555544433334556665553 333
Q ss_pred hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 331 VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 331 v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
+....... ...++.+++++++....+...+...+.. -..+.+..++..++|.+-
T Consensus 151 l~~~l~sr-~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSR-CQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhc-ceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 33222111 1579999999999988888766443221 123456778888888654
No 120
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.81 E-value=2.1e-05 Score=88.40 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=60.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhc-ccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCC-------Ccc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGP-------NIP 281 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-------~~~ 281 (1243)
-..++|+|++|+||||||+++|+.+.. +|+.++|+..+++.. ..+.++++++...+-....+.... ...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 456789999999999999999997654 699999998766521 367788888864322111111000 000
Q ss_pred HHHHH-hhcCceEEEEEecCCChh
Q 000874 282 QFTKE-RVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 282 ~~l~~-~L~~kr~LlVLDdv~~~~ 304 (1243)
+..+. +-.+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 11111 136799999999996543
No 121
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00028 Score=84.87 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=105.2
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 241 (1243)
...+++||-+.-++.|.+++..+. -.....++|+.|+||||+|+.+++.+-.. |...
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 456789999999999999997642 34567899999999999999999865321 1111
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 319 (1243)
..+.. ... .++.++.+ ++..+.. ....++.-++|+|+|+.. .....++..+....+.
T Consensus 91 ~eida----as~-~~v~~iR~-l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDA----ASR-TKVEDTRE-LLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEcc----ccc-CCHHHHHH-HHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22210 011 33333322 2222110 011245568899999865 3455565555544556
Q ss_pred CeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 320 SRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 320 srIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
+++|++|.+. .+...... ....++++.++.++..+.+...+-..+..- ..+....|++.++|-+.-
T Consensus 150 ~~fIlattd~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLS-RCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred eEEEEEECChHhchHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 7777666543 33222111 115688999999987776655543222111 123456778888887653
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00031 Score=85.17 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=105.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------Cce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 241 (1243)
.....+||-+.-++.+..++..+ .-...+.++|+.|+||||+|+.++..+-... ...
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 45567999999999999988763 2345678999999999999999998653211 111
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~g 319 (1243)
..+.. ... .++.++. +++..... .-..+++-++|+|+++.... ...++..+......
T Consensus 91 ~ei~~----~~~-~~vd~ir-~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDA----ASN-TQVDAMR-ELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeec----ccc-CCHHHHH-HHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 11100 000 1222221 22221110 01135667899999986643 55565555544456
Q ss_pred CeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 320 SRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 320 srIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
+.+|++|.+. .+...... ....++++.++.++..+.+.+.+-..+.. ...+....+++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6666666543 33221110 11678999999999888887655322211 123345778888888765
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.75 E-value=0.00019 Score=82.32 Aligned_cols=151 Identities=14% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 261 (1243)
|...+.++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| ..+.. .. .....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~---~~---~~~~~i~ 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNG---SD---CRIDFVR 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEecc---Cc---ccHHHHH
Confidence 445678999999999999988753 3456777899999999999999998764322 22211 00 1122222
Q ss_pred HHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh---hhhHHHhcCCCCCCCCCeEEEEecccchh-cccCC
Q 000874 262 KQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV---GQLEGLIGGLDQYGPGSRIVVTTRDKGVL-EKFGV 337 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~~~ 337 (1243)
..+...... ..+.+.+-++|+||++.. +..+.+...+.....++++|+||...... ....
T Consensus 86 ~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~- 149 (316)
T PHA02544 86 NRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR- 149 (316)
T ss_pred HHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH-
Confidence 222111100 001134557899999765 22233333233345677899988654321 1111
Q ss_pred CcceEEecCCCCHHHHHHHHHH
Q 000874 338 EEEKIYGVNGLEFDEAFELFCN 359 (1243)
Q Consensus 338 ~~~~~~~v~~L~~~ea~~Lf~~ 359 (1243)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 1114677777888887766554
No 124
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0028 Score=72.62 Aligned_cols=205 Identities=11% Similarity=0.146 Sum_probs=116.0
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccc-ccCCCChHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRN-SETGGGLEHL 260 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-~~~~~~l~~l 260 (1243)
+.+.+..|.|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.++.+.+=-.+++++ .... +....+...+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 34556678898555555555543 2458899999999999999999988765423334443 3322 1122345555
Q ss_pred HHHHHHh----hhccc-----ccc---cCCCccHHHHHhh---cCceEEEEEecCCChhh----hHHHhcCCC-CC----
Q 000874 261 QKQMLST----ILSEK-----LEV---AGPNIPQFTKERV---RRMKVLIVLDDVNKVGQ----LEGLIGGLD-QY---- 316 (1243)
Q Consensus 261 ~~~ll~~----l~~~~-----~~~---~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~----~~~l~~~~~-~~---- 316 (1243)
.+.+... +.... +.. ........+.+.+ .+++++|+||+|+..-. .+.+.+.+. |.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5444443 33221 000 1112223444432 25799999999975432 112222111 00
Q ss_pred --C-CCCeEEEEecccc---hhcc----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 000874 317 --G-PGSRIVVTTRDKG---VLEK----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 317 --~-~gsrIIiTTR~~~---v~~~----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP 386 (1243)
. -.+-.+|...+.. .... ..+. ..+++++++.+|...|...+... .. ....+++...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg--~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIG--QPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccc--cceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCH
Confidence 0 0111222222111 1111 1222 57899999999999999887422 11 122889999999999
Q ss_pred hhHHHHhhhhCCC
Q 000874 387 LVLKVLGSSLCLK 399 (1243)
Q Consensus 387 Lal~~~g~~L~~~ 399 (1243)
.-+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9888888888653
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00021 Score=90.91 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 163 LVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 163 ~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
.+++...+...+..+ ...+.++||+.+++++...|... ...-+.++|.+|+|||++|+.+++++..
T Consensus 164 ~l~~~~~~l~~~~r~-----~~l~~~igr~~ei~~~~~~L~~~---~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN-----GKIDPLIGREDELERTIQVLCRR---KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHhhhHHHHHhc-----CCCCcccCcHHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 455555555554433 33457999999999999988764 2334579999999999999999998754
No 126
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00015 Score=86.96 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=104.2
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 261 (1243)
|.....++|.+.-++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |... .. .+-....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~--~~----Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG--DC----CNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC--CC----CcccHHH
Confidence 345678999999999999988654 2346788999999999999999998763210 0000 00 0000111
Q ss_pred HHHHHhhhcccccccCC--CccHHHH---Hh-----hcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEec-c
Q 000874 262 KQMLSTILSEKLEVAGP--NIPQFTK---ER-----VRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTR-D 328 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~~--~~~~~l~---~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR-~ 328 (1243)
+.+.......-...++. .-.+.++ +. ..+++-++|+|+++.. ..+..|+..+....+.+.+|++|. .
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 11110000000000000 0001111 11 1123346999999764 345555554443344556655553 3
Q ss_pred cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-hHHHH
Q 000874 329 KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL-VLKVL 392 (1243)
Q Consensus 329 ~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL-al~~~ 392 (1243)
..+....... ...+++.+++.++....+...+-..... -..+.+..+++.++|-+- |+..+
T Consensus 160 ~KLl~TI~SR-cq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 160 QKIPLTIISR-CQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HhhhHHHHhh-hhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 3333221111 1679999999999988887765332211 113446778888888654 44333
No 127
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.5e-05 Score=58.00 Aligned_cols=40 Identities=33% Similarity=0.550 Sum_probs=25.9
Q ss_pred CCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccc
Q 000874 859 SSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLP 898 (1243)
Q Consensus 859 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 898 (1243)
++|++|++++|+++++|..++.|++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777666677777777777777666554
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00053 Score=81.56 Aligned_cols=181 Identities=14% Similarity=0.174 Sum_probs=104.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---C---c-e-------------E
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---E---G-R-------------C 242 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~---~-~-------------~ 242 (1243)
...+.++|.+..++.+.+++..+ .-...+.++|+.|+||||+|+.+++.+-..= + + . -
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 45678999999999999998753 2246678999999999999999998653210 0 0 0 0
Q ss_pred EEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCC
Q 000874 243 FMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGS 320 (1243)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs 320 (1243)
|+.. .. ... .++..+. ++...+. .....+++-++|+|+++... ..+.|...+....+..
T Consensus 92 ~~~i-~g-~~~-~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLEI-DG-ASH-RGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEEe-ec-ccc-CCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1100 00 000 1222221 1111110 00112456688999987553 3455555544444566
Q ss_pred eEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 321 RIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 321 rIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
.+|++|.+ ..+...... ....++++.+++++..+.+...+-+.+. .-..+.+..++++++|.+-
T Consensus 153 ~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 67666643 333322211 1167999999999988888776532221 1223457788888988654
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00047 Score=83.35 Aligned_cols=187 Identities=12% Similarity=0.107 Sum_probs=109.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc--C-------------------ce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--E-------------------GR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~~ 241 (1243)
...+++||-+.-++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... . .+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 44567899888888888888653 2246788999999999999999998654211 0 01
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh--hhhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 319 (1243)
.++.. ... .++.++.. +...+. ..-..+++-+||+|+++.. .....|+..+....+.
T Consensus 91 ~eId~----a~~-~~Id~iR~-L~~~~~---------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEIDG----ASN-RGIDDAKR-LKEAIG---------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEec----ccc-cCHHHHHH-HHHHHH---------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 11100 000 12222211 111110 0012355678999999765 3356666555433445
Q ss_pred CeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hhHHHHhhh
Q 000874 320 SRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP-LVLKVLGSS 395 (1243)
Q Consensus 320 srIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP-Lal~~~g~~ 395 (1243)
..+|++|.+ ..+...... ....++++.++.++..+.+...+..... .-..+.+..|++.++|.+ .|+..+...
T Consensus 150 ~ifILaTt~~~kll~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred EEEEEecCChhhhhHHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 666666654 333322211 1157899999999999888876643321 112345677888888854 566666543
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00075 Score=81.12 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=90.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
..-+.|+|..|+|||+||+++++++..++.. +.|+. ...+...+...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHHH
Confidence 4568899999999999999999988776533 33432 223333343333221 11224444
Q ss_pred hcCceEEEEEecCCChhh----hHHHhcCCCC-CCCCCeEEEEecccc---------hhcccCCCcceEEecCCCCHHHH
Q 000874 288 VRRMKVLIVLDDVNKVGQ----LEGLIGGLDQ-YGPGSRIVVTTRDKG---------VLEKFGVEEEKIYGVNGLEFDEA 353 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~~----~~~l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea 353 (1243)
++. .-+|||||++.... -+.+...+.. ...|..|||||.... +...+.. ..++++++++.++.
T Consensus 209 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--gl~v~i~~pd~~~r 285 (450)
T PRK00149 209 YRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW--GLTVDIEPPDLETR 285 (450)
T ss_pred Hhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC--CeeEEecCCCHHHH
Confidence 543 44889999964311 1222221111 123456888876431 1222322 25799999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 354 FELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.+++...+-... ..--.++..-|++.+.|..-.
T Consensus 286 ~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 286 IAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHH
Confidence 999998874321 112234567777777776553
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.67 E-value=0.00048 Score=81.73 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
...+.|+|..|+|||+||+++++.+..+... ++|+. ..++...+...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 3568899999999999999999987766432 33432 123333444433221 11224444
Q ss_pred hcCceEEEEEecCCChhh---h-HHHhcCCCCC-CCCCeEEEEeccc-c--------hhcccCCCcceEEecCCCCHHHH
Q 000874 288 VRRMKVLIVLDDVNKVGQ---L-EGLIGGLDQY-GPGSRIVVTTRDK-G--------VLEKFGVEEEKIYGVNGLEFDEA 353 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~~---~-~~l~~~~~~~-~~gsrIIiTTR~~-~--------v~~~~~~~~~~~~~v~~L~~~ea 353 (1243)
++. .-+|||||++.... + +.+...+... ..|..||||+... . +...+.. ..++++++.+.++.
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r 273 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETR 273 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHH
Confidence 443 33788999975321 1 2222222111 2355688877632 1 1222221 25789999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 354 FELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
.+++...+-.... .-..++...|++.+.|..-.
T Consensus 274 ~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 274 LAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHH
Confidence 9999888743221 11245566666776665543
No 132
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00071 Score=85.55 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=105.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccC-----------------------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE----------------------- 239 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----------------------- 239 (1243)
.....+||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+-....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 455679999999999999987642 3356789999999999999999987642110
Q ss_pred ceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCC
Q 000874 240 GRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYG 317 (1243)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 317 (1243)
.+.++. .....++.++.+ +...+ ......+++-++|||+++... ....|+..+....
T Consensus 90 dv~eid-----aas~~~Vd~iR~-l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEID-----AASHGGVDDARE-LRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEec-----ccccCCHHHHHH-HHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 001110 000012222221 11111 011123455578899998763 3555655555445
Q ss_pred CCCeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 318 PGSRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 318 ~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
..+.+|++|.+ ..+....... ...|++..++.++..+.+.+.+-..... ...+....|++.++|.+.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSR-c~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSR-THHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhh-eeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 56666655543 3444332211 1789999999999888887754222211 123345678888888764
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00037 Score=85.26 Aligned_cols=196 Identities=12% Similarity=0.110 Sum_probs=103.8
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc--cCceEEEeeccccccCCCChHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--FEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
.....+||-+.-++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|...+... .+....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~s 86 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECES 86 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHH
Confidence 45678999999899999988653 234558899999999999999999875331 1100111000000 000011
Q ss_pred HHHHHHhhhcccccccCC-----CccHHHHHh-----hcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEe-c
Q 000874 261 QKQMLSTILSEKLEVAGP-----NIPQFTKER-----VRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTT-R 327 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~~~-----~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTT-R 327 (1243)
.+.+...-...-...++. +....+.+. ..+++-++|+|+++... ..+.|+..+....+.+.+|++| +
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 111100000000000000 000111111 22445578999997653 3555665555444556655555 4
Q ss_pred ccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 328 DKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 328 ~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
...+...... ...++++..++.++....+...+-.... .-..+.+..++..++|..-
T Consensus 167 ~~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 3444332211 1278999999999988877765532221 1123456788888888544
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=0.00022 Score=83.50 Aligned_cols=156 Identities=20% Similarity=0.326 Sum_probs=91.0
Q ss_pred CCCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccccc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSE 252 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 252 (1243)
....++.|.+..++++.+.+...- -...+-|.++|++|.|||++|++++++....|- .+. .
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~--~---- 250 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV--G---- 250 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe--c----
Confidence 344678899999999888764210 023456889999999999999999998765541 111 0
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCC-ccHHHHHhhcCceEEEEEecCCChh----------------hhHHHhcCCCC
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPN-IPQFTKERVRRMKVLIVLDDVNKVG----------------QLEGLIGGLDQ 315 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1243)
.. +......+ +.. +...+.....+.+.+|+||+++... .+..++..+..
T Consensus 251 --se---L~~k~~Ge---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 251 --SE---LIQKYLGD---------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred --ch---hhhhhcch---------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 00 00000000 000 0111222223567889999875321 01222222222
Q ss_pred C--CCCCeEEEEecccchhccc-----CCCcceEEecCCCCHHHHHHHHHHhhcC
Q 000874 316 Y--GPGSRIVVTTRDKGVLEKF-----GVEEEKIYGVNGLEFDEAFELFCNFAFE 363 (1243)
Q Consensus 316 ~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af~ 363 (1243)
+ ..+.+||+||...+..... ..+ ..++++..+.++..++|..++.+
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd--~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRID--RKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeE--EEEEeCCCCHHHHHHHHHHHHhc
Confidence 2 2356788888755543321 233 68999999999999999987643
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.65 E-value=0.0012 Score=72.64 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=104.8
Q ss_pred CCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHH
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQ 263 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 263 (1243)
..+.+-+|+.++..+..++...+..-+..|.|+|-.|.|||.+.+++.+.... ..+|+..+.+ +..+.+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ec-----ft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVEC-----FTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHh-----ccHHHHHHH
Confidence 35678999999999999998766323456699999999999999999997632 3467766554 777888888
Q ss_pred HHHhhhcccccc---cC--CCccHHHHHh-----h--cCceEEEEEecCCChhhhHH-----HhcCCCCCCCCCeEEEEe
Q 000874 264 MLSTILSEKLEV---AG--PNIPQFTKER-----V--RRMKVLIVLDDVNKVGQLEG-----LIGGLDQYGPGSRIVVTT 326 (1243)
Q Consensus 264 ll~~l~~~~~~~---~~--~~~~~~l~~~-----L--~~kr~LlVLDdv~~~~~~~~-----l~~~~~~~~~gsrIIiTT 326 (1243)
|+.+.+..+.+. .+ +++...+... . +++.++||||+++...+.+. +.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 888864221111 11 1111222111 1 14699999999987654322 211100011112334443
Q ss_pred cccc---hhcccCCCcceEEecCCCCHHHHHHHHHHh
Q 000874 327 RDKG---VLEKFGVEEEKIYGVNGLEFDEAFELFCNF 360 (1243)
Q Consensus 327 R~~~---v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 360 (1243)
-... -...+|.....++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3221 122245544467888899999999988664
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00047 Score=84.63 Aligned_cols=189 Identities=11% Similarity=0.165 Sum_probs=106.0
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccc------------
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRR------------ 249 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~------------ 249 (1243)
|.....+||-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-.+-.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 345677999999999999998764 235667899999999999999999865321000000000000
Q ss_pred -cccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEe
Q 000874 250 -NSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTT 326 (1243)
Q Consensus 250 -~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTT 326 (1243)
......++.++ +++...+. .....+++-++|+|+++... .+..|+..+....+...+|++|
T Consensus 92 idaasn~~vd~I-ReLie~~~---------------~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 92 MDAASNNGVDEI-RELIENVK---------------NLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred EeccccCCHHHH-HHHHHHHH---------------hchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 00000111111 11111110 00123556688999997653 4666666555444455555444
Q ss_pred -cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-hHHH
Q 000874 327 -RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL-VLKV 391 (1243)
Q Consensus 327 -R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL-al~~ 391 (1243)
+...+....... ...+++.+++.++..+.+...+-..+. ....+.+..+++.++|-+- |+..
T Consensus 156 te~~KLl~TI~SR-cq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 156 TEVHKIPLTILSR-VQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred CChhhhhHHHHhh-ceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444443322111 168999999999998888775432221 1113346778888888654 4443
No 137
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.60 E-value=4.9e-05 Score=82.32 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=59.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhc-ccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccC-------CCc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAG-------PNI 280 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-------~~~ 280 (1243)
....++|.|++|+|||||++++++.+.. +|+..+|+..+.+. ..++.++++.+...+-........ ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4467899999999999999999997654 68999998765442 257888888883331111111000 001
Q ss_pred cHHHHH-hhcCceEEEEEecCCChh
Q 000874 281 PQFTKE-RVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 281 ~~~l~~-~L~~kr~LlVLDdv~~~~ 304 (1243)
.+..+. +-.++++++++|++....
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhh
Confidence 111121 135799999999986543
No 138
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00071 Score=82.71 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=108.8
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccC----ceEEEeeccccccCCCCh
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE----GRCFMSDVRRNSETGGGL 257 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~~~~~~~l 257 (1243)
|...+.+||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.... +..+-. .+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~---------cg~ 88 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL---------CGV 88 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc---------Ccc
Confidence 345678999999999999998764 23456889999999999999999997643321 000000 000
Q ss_pred HHHHHHHHHhhhcccccccCC--CccHHHH---Hh-----hcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEE
Q 000874 258 EHLQKQMLSTILSEKLEVAGP--NIPQFTK---ER-----VRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVT 325 (1243)
Q Consensus 258 ~~l~~~ll~~l~~~~~~~~~~--~~~~~l~---~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiT 325 (1243)
..-.+.+......+-...+.. .-.+.++ +. ..+++-++|+|+++... ..+.|+..+....+.+.+|++
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 000111111000000000000 0001111 11 12345578999997654 355665555444556676655
Q ss_pred e-cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 326 T-RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 326 T-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
| ....+....... ...++++.++.++..+.+...+-..... -..+....|++.++|-+.-+.
T Consensus 169 tte~~kll~tI~SR-cq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 169 TTEIRKVPVTVLSR-CQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred eCChhhhhHHHHhh-eeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 5 433443332111 1689999999999998888776332211 123456788888998876443
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.58 E-value=0.00082 Score=74.50 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhccc--CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTK 285 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 285 (1243)
....-+.++|++|+||||+|+.+++.+...- ....++. +.. .++..... +. . ...++
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--------~~l~~~~~---g~-----~----~~~~~ 98 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--------ADLVGEYI---GH-----T----AQKTR 98 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--------HHhhhhhc---cc-----h----HHHHH
Confidence 3456688999999999999999998653211 1111221 111 11111100 00 0 01111
Q ss_pred Hhhc-CceEEEEEecCCCh----------hhhHHHhcCCCCCCCCCeEEEEecccch----------hcccCCCcceEEe
Q 000874 286 ERVR-RMKVLIVLDDVNKV----------GQLEGLIGGLDQYGPGSRIVVTTRDKGV----------LEKFGVEEEKIYG 344 (1243)
Q Consensus 286 ~~L~-~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v----------~~~~~~~~~~~~~ 344 (1243)
+.+. ...-+|++|+++.. +..+.+............+|+++..... ...+ . ..++
T Consensus 99 ~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~--~~i~ 174 (261)
T TIGR02881 99 EVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--P--ISID 174 (261)
T ss_pred HHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--c--eEEE
Confidence 2111 11348899999752 2345555554433333355555543322 1222 2 5688
Q ss_pred cCCCCHHHHHHHHHHhhc
Q 000874 345 VNGLEFDEAFELFCNFAF 362 (1243)
Q Consensus 345 v~~L~~~ea~~Lf~~~af 362 (1243)
++.++.+|-.+++.+.+-
T Consensus 175 f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVK 192 (261)
T ss_pred ECCCCHHHHHHHHHHHHH
Confidence 999999999999887763
No 140
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.58 E-value=0.00052 Score=81.56 Aligned_cols=163 Identities=17% Similarity=0.252 Sum_probs=91.7
Q ss_pred CCCCCCCcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhccc-----CceEEEe
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-----EGRCFMS 245 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~ 245 (1243)
|......+.|.+..++++.+.+... .-...+-|.++|++|.|||++|+++++.+...+ ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 3344566888999998887765321 002345688999999999999999999876542 2234442
Q ss_pred eccccc-cCCC-ChHHHHHHHHHhhhcccccccCCCccHHHHHh-hcCceEEEEEecCCChh---------h-----hHH
Q 000874 246 DVRRNS-ETGG-GLEHLQKQMLSTILSEKLEVAGPNIPQFTKER-VRRMKVLIVLDDVNKVG---------Q-----LEG 308 (1243)
Q Consensus 246 ~~~~~~-~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~ 308 (1243)
...... .... ......+.+. +..++. -.+++++|+||+++... + +..
T Consensus 257 v~~~eLl~kyvGete~~ir~iF----------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~ 320 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIF----------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ 320 (512)
T ss_pred ccchhhcccccchHHHHHHHHH----------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH
Confidence 111000 0000 0000011111 111211 13478999999996431 1 223
Q ss_pred HhcCCCCCC--CCCeEEEEecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhh
Q 000874 309 LIGGLDQYG--PGSRIVVTTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 309 l~~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
++..+.... .+..||.||...+.... ...+ ..++++..+.+++.++|..+.
T Consensus 321 LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD--~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 321 LLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLD--VKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHhcccccCCceEEEeccCChhhCCHhhcCccccc--eEEEeCCCCHHHHHHHHHHHh
Confidence 443333222 34445556654443221 1234 679999999999999999886
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0012 Score=80.21 Aligned_cols=184 Identities=15% Similarity=0.138 Sum_probs=107.0
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc--C---------------------
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--E--------------------- 239 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~--------------------- 239 (1243)
...+++||-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-... .
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 45678999999999999998763 2345678999999999999999998654211 0
Q ss_pred ceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCC
Q 000874 240 GRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYG 317 (1243)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 317 (1243)
.++.+. .....++.++. ++...+. ..-..+++-++|+|+++... ....|+..+....
T Consensus 88 dvieid-----aas~~gvd~iR-el~~~~~---------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp 146 (584)
T PRK14952 88 DVVELD-----AASHGGVDDTR-ELRDRAF---------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP 146 (584)
T ss_pred eEEEec-----cccccCHHHHH-HHHHHHH---------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC
Confidence 000010 00001222221 1111110 00112455688999997653 3556665555445
Q ss_pred CCCeEEEEec-ccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-hHHHH
Q 000874 318 PGSRIVVTTR-DKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL-VLKVL 392 (1243)
Q Consensus 318 ~gsrIIiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL-al~~~ 392 (1243)
....+|++|. ...+....... ...++...++.++..+.+...+-.....- ..+....|++.++|-+- |+..+
T Consensus 147 ~~~~fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5666665554 34443322111 16899999999998888877654322211 13345677888888764 44433
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00064 Score=84.02 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=108.7
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
...+.+||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+-...... .....+.....+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---------~~~~c~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---------KGRPCGTCEMCR 81 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccCHHHH
Confidence 45678999999999998888753 2345678999999999999999998764211000 000011111222
Q ss_pred HHHHhhhcccccccCC--CccH---HHHHhh-----cCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEeccc-
Q 000874 263 QMLSTILSEKLEVAGP--NIPQ---FTKERV-----RRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTRDK- 329 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~--~~~~---~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~- 329 (1243)
.+...........+.. .-.+ .+.+.+ .+++-++|+|+++.. +..+.|+..+....+.+.+|++|.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 2211110000000000 0001 111111 245668999999755 34566665554444566777666433
Q ss_pred chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 000874 330 GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKV 391 (1243)
Q Consensus 330 ~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~ 391 (1243)
.+....... ...++++.++.++....+.+.+...+.. -..+.+..+++.++|.+..+..
T Consensus 162 kll~tI~SR-~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSR-CQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhc-cceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 333222111 1578899999999888887776432211 1234577888999998764443
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.00052 Score=81.53 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=89.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
..-+.|+|..|+|||+||+++++.+...... +.|+. ..++...+...+.... ...+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~~--------~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEGK--------LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhccc--------HHHHHHH
Confidence 3458999999999999999999987765432 34442 2234444444433211 1224444
Q ss_pred hcCceEEEEEecCCChh---hh-HHHhcCCCC-CCCCCeEEEEec-ccchh--------cccCCCcceEEecCCCCHHHH
Q 000874 288 VRRMKVLIVLDDVNKVG---QL-EGLIGGLDQ-YGPGSRIVVTTR-DKGVL--------EKFGVEEEKIYGVNGLEFDEA 353 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIIiTTR-~~~v~--------~~~~~~~~~~~~v~~L~~~ea 353 (1243)
.+.+.-+|++||++... .+ +.+...+.. ...|..||+||. ...-. ..+... .++++++.+.+.-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHH
Confidence 44445689999997431 11 122221111 123457888875 32211 122222 5789999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 354 FELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
.+++.+.+-.... .--.++...|++.+.|.--
T Consensus 269 ~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 269 KKIARKMLEIEHG--ELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHhccccCHH
Confidence 9999888743221 1123456677777766543
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.53 E-value=0.001 Score=77.61 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=99.9
Q ss_pred CCCCCCCcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccc
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRN 250 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~ 250 (1243)
|.....++.|.+..+++|.+.+... .-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~s- 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVGS- 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH-
Confidence 4445567899999998888765321 013457789999999999999999999765443 111100
Q ss_pred ccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh----------------hhHHHhcCCC
Q 000874 251 SETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG----------------QLEGLIGGLD 314 (1243)
Q Consensus 251 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~ 314 (1243)
.+......+ ....+.+.+.......+.+|+||+++... .+..++..+.
T Consensus 214 --------~l~~k~~ge--------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 214 --------EFVQKYLGE--------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred --------HHHHHhcch--------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 111110000 00001111222234568899999986421 1223333333
Q ss_pred CC--CCCCeEEEEecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCc
Q 000874 315 QY--GPGSRIVVTTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENH-CPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 315 ~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~glP 386 (1243)
.. ..+..||+||...+.... ...+ ..++++..+.++..++|..+.-+... ..-+ ..++++.+.|.-
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd--~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLD--RKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCccc--EEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 22 235678888875554322 1244 67899999999999999876533221 1122 345556666654
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.001 Score=85.23 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc----
Q 000874 163 LVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---- 238 (1243)
Q Consensus 163 ~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---- 238 (1243)
.+++...+...+..+ ...+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 169 ~l~~~~~~L~~~~r~-----~~ld~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 169 ALDQYTTDLTAQARE-----GKIDPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred hHHHHhhhHHHHhcC-----CCCCcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 445555554444333 345679999999999999887642 33456999999999999999999875432
Q ss_pred --CceEEEeecccccc-C--CCChHHHHHHHHHhhhcccccccCCCccHHHHHhh-cCceEEEEEecCCChh-------h
Q 000874 239 --EGRCFMSDVRRNSE-T--GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV-RRMKVLIVLDDVNKVG-------Q 305 (1243)
Q Consensus 239 --~~~~~~~~~~~~~~-~--~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~-------~ 305 (1243)
...+|..+...... . ......-.+++ +.+.- .+++++|++|++.... +
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i-------------------i~e~~~~~~~~ILfIDEih~l~~~g~~~~~ 301 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSV-------------------IDEVKASPQPIILFIDEAHTLIGAGGQAGQ 301 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHH-------------------HHHHHhcCCCeEEEEeChHHhccCCCcccc
Confidence 12233222221100 0 00111111111 11111 2468999999985432 1
Q ss_pred --hHH-HhcCCCCCCCCCeEEEEecccc----------hhcccCCCcceEEecCCCCHHHHHHHHHHh
Q 000874 306 --LEG-LIGGLDQYGPGSRIVVTTRDKG----------VLEKFGVEEEKIYGVNGLEFDEAFELFCNF 360 (1243)
Q Consensus 306 --~~~-l~~~~~~~~~gsrIIiTTR~~~----------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 360 (1243)
... +.+.+. .| .-++|-||...+ +...+ .++.|++++.+++.+++...
T Consensus 302 ~d~~n~Lkp~l~-~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf-----~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 302 GDAANLLKPALA-RG-ELRTIAATTWAEYKKYFEKDPALTRRF-----QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ccHHHHhhHHhh-CC-CeEEEEecCHHHHhhhhhccHHHHHhC-----eEEEeCCCCHHHHHHHHHHH
Confidence 112 332222 12 245555555422 22222 68999999999999997543
No 146
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00071 Score=76.40 Aligned_cols=332 Identities=17% Similarity=0.221 Sum_probs=168.1
Q ss_pred CCCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCc--eEEEeeccccccCCCChHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~ 259 (1243)
..+..++||+.++..+.+++..-- ....+-+-|.|-+|.|||.+...++.+....... .+++.+. +- .....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~---sl--~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT---SL--TEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec---cc--cchHH
Confidence 456789999999999999986531 1566788899999999999999999876544333 3555422 21 23345
Q ss_pred HHHHHHHhh-hcccccccCCCccHHHHHhhcCc--eEEEEEecCCChhh--hHHHhcCCCCC-CCCCeEEEEeccc----
Q 000874 260 LQKQMLSTI-LSEKLEVAGPNIPQFTKERVRRM--KVLIVLDDVNKVGQ--LEGLIGGLDQY-GPGSRIVVTTRDK---- 329 (1243)
Q Consensus 260 l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIIiTTR~~---- 329 (1243)
+.+.+...+ .....+..+.+..+.+.+..... -+|+|||.+|.... -+.+...+.|. -+++|+|+.---.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 666666664 33332323333334455555443 58999999876542 22233333333 2677766542111
Q ss_pred --chhcc----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCchhHHHHhhhhCCCC
Q 000874 330 --GVLEK----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENHC---PEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKR 400 (1243)
Q Consensus 330 --~v~~~----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~---~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~ 400 (1243)
..+.. .+.. +.....++-+.++-.+++..+.-..... +...+-.|++++.--|.+--|+-+.-+.+. .-
T Consensus 302 TdR~LprL~~~~~~~-P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE-I~ 379 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIK-PKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE-IA 379 (529)
T ss_pred HHHHhhhhhhccCCC-CceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH-HH
Confidence 11111 1222 2678888999999999998876322111 122333344444444555555555443320 01
Q ss_pred HHHHHHHHH-HHhhc--cCcc----hhhhHhHHhh--------ccccCchhhhhhhheeccccCCCCHHH-HHHHHhhcc
Q 000874 401 KSHWENVLD-DLNRI--CESE----IHDIYDILKI--------SFNELIPREKSMFLDIACFFEGEDKDI-LMRILDDSE 464 (1243)
Q Consensus 401 ~~~w~~~l~-~l~~~--~~~~----i~~v~~~l~~--------sy~~L~~~~k~~fl~~a~f~~~~~~~~-~~~~l~~~~ 464 (1243)
..+|+.... .+... +... +..+..++.- +-+.||-++|-++--++...++...+. +.++.+
T Consensus 380 E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~slplqqkiilctl~~l~r~~kkd~s~~eL~e--- 456 (529)
T KOG2227|consen 380 EIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESLPLQQKIILCTLVLLIRGNKKDVSIAELYE--- 456 (529)
T ss_pred HHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhcCcccchhHHHHHHHHhcccccccHHHHHH---
Confidence 123333311 11100 1110 2222222222 222334444444333333334333221 111111
Q ss_pred cchhhhcccccceEEc--CCeEecchhHHHHHHHHhhccccCCCCCcccccChHHHHHHhhccC
Q 000874 465 SYALGVLIDKSLITIS--HNCLQMHDLLQEMGRQIVRQESQKEPGKRSRLWDPKEIRRVLKHNK 526 (1243)
Q Consensus 465 ~~~~~~L~~~sLi~~~--~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~vl~~~~ 526 (1243)
.|+.+-. ...|... .....|-+++..-|.--.+...-...++.+..|+.+++.+.+.+..
T Consensus 457 -~Y~k~C~-~~~I~~ld~tEF~~i~~ilet~gil~l~~~k~~kl~kv~l~vde~~i~~Al~D~~ 518 (529)
T KOG2227|consen 457 -AYLKACQ-KREIAPLDRTEFLSICDILETQGILRLRRKKEPKLKKVVLQVDEDDIMRALSDKA 518 (529)
T ss_pred -HHHHHHH-hccCCcccHHHHHHHHHHHHhhhHHHHhhhcCCccceEEEecchHHHHHHHhHHH
Confidence 1122211 1122221 2345566777776655555443223445556788888888877654
No 147
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0013 Score=78.87 Aligned_cols=182 Identities=11% Similarity=0.092 Sum_probs=104.1
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---c-C-----------------ce
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---F-E-----------------GR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F-~-----------------~~ 241 (1243)
.....++|-+.-++.+.+++..+. -.....++|+.|+||||+|+.++..+-.. . + ..
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 455679999999999999997642 34566789999999999999999865321 0 0 00
Q ss_pred EEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 242 CFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
..+. . +.. .++.++. .+...+. .....+++-++|+|+++... ..+.+...+....+.
T Consensus 91 ~eid---a-as~-~gvd~ir-~I~~~~~---------------~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEID---A-ASN-RGIDDIR-ALRDAVS---------------YTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEe---C-ccC-CCHHHHH-HHHHHHH---------------hCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 0 000 1121111 1111110 00123566799999997653 355565555444445
Q ss_pred CeEEEEec-ccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 320 SRIVVTTR-DKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 320 srIIiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
..+|++|. ...+....... ...+++.+++.++....+...+-.... .-..+.+..++..++|.+..+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred eEEEEEECCHHHHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 56665553 33333221111 167899999999988888776533221 1123446677888888765443
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0015 Score=78.10 Aligned_cols=182 Identities=11% Similarity=0.079 Sum_probs=108.0
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-c-------------------CceE
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-------------------EGRC 242 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-------------------~~~~ 242 (1243)
...+.+||-+.-++.+...+..+ .-..+..++|+.|+||||+|+.+++.+-.. . ...+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 45678999998889999988653 234566899999999999999999865311 0 0001
Q ss_pred EEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCC
Q 000874 243 FMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGS 320 (1243)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs 320 (1243)
+..+ . +.. .++..+...+ ..... ....+++-++|+|+++... ....++..+....+.+
T Consensus 89 ~eld--a-as~-~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 89 IEMD--A-ASN-RGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred EEec--c-ccc-cCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 1000 0 000 2233332222 11000 0011456688999997653 3555655555445667
Q ss_pred eEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 321 RIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 321 rIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
++|++|.+.. +....... ...+++.+++.++..+.+...+-..+.. -..+.+..|++.++|.+--+
T Consensus 149 ~FIL~ttd~~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 149 KFILATTDPLKLPATILSR-TQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEEEECChhhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 7777776642 22211111 2689999999999988887665332221 12345678888899887533
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.00092 Score=86.18 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 163 LVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 163 ~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..++...++.++-.. ...+.++||+.+++++...|.... ..-+.++|.+|+|||++|+.++.++..
T Consensus 161 ~l~~~~~~l~~~a~~-----~~~~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 161 TLEEFGTNLTKEAID-----GNLDPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred HHHHHHHHHHHHHHc-----CCCCCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 455555555444222 223569999999999999997642 334569999999999999999998653
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.003 Score=74.88 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=76.5
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
.-+.|+|+.|+|||+||+++++.+..+-..++|+. ...+...+...+.... .+.+++..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~~--------~~~f~~~~~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSGE--------MQRFRQFYRN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcch--------HHHHHHHccc
Confidence 45789999999999999999998765544445543 1233344444432211 1224444433
Q ss_pred ceEEEEEecCCChhh----hHHHhcCCCC-CCCCCeEEEEeccc---------chhcccCCCcceEEecCCCCHHHHHHH
Q 000874 291 MKVLIVLDDVNKVGQ----LEGLIGGLDQ-YGPGSRIVVTTRDK---------GVLEKFGVEEEKIYGVNGLEFDEAFEL 356 (1243)
Q Consensus 291 kr~LlVLDdv~~~~~----~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~L 356 (1243)
.-+|++||+..... -+.+...+.. ...|..||+||... .+...+.. +.++++.+++.++..++
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~--Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW--GIAIPLHPLTKEGLRSF 279 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC--CeEEecCCCCHHHHHHH
Confidence 44788899855321 1222221111 12356788888542 12222222 26899999999999999
Q ss_pred HHHhhc
Q 000874 357 FCNFAF 362 (1243)
Q Consensus 357 f~~~af 362 (1243)
+.+++-
T Consensus 280 L~~k~~ 285 (445)
T PRK12422 280 LERKAE 285 (445)
T ss_pred HHHHHH
Confidence 988774
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=4.4e-05 Score=94.60 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=84.4
Q ss_pred CcccEeeccccCcc--ccCccc-ccccCCcEEeecCCCCC-CcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 000874 764 EHLKRIYLERTAIT--ELPSSF-ENLLGLEFLTVSGCSKL-DKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRML 839 (1243)
Q Consensus 764 ~~L~~L~L~~n~l~--~lp~~l-~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L 839 (1243)
.+|++|++++...- .-|..+ ..||+|+.|.+++-.+. +.+.....++|+|..||++++.++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35666666553221 112222 23677777777663332 12223345677777777777777776 566777777777
Q ss_pred EeccCCCCCCCChhhccCCCCCcEEEeccCCCCCcch-------hhcCCCCCCEEeCcCCCCc--ccchhccCCCCCCEE
Q 000874 840 FFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVTEIPQ-------DIACLSSLTTLNLSGNNFE--SLPASIKQLSQLSSL 910 (1243)
Q Consensus 840 ~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~l~~lp~-------~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 910 (1243)
.+.+-.....-.-..+.+|.+|+.||+|.......+. .-..+|+|+.||.|++.+. .+...+..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 7665443322212234567788888887765543221 1234778888888887766 233334445566555
Q ss_pred eecCC
Q 000874 911 YLKDC 915 (1243)
Q Consensus 911 ~L~~c 915 (1243)
.+-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 54443
No 152
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.40 E-value=0.00029 Score=79.92 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=62.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCC---Cc----
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGP---NI---- 280 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~---~~---- 280 (1243)
.-..++|+|++|.|||||++.+++.+... |+..+|+..+++. ...+.+++++++..+-....+.... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34578999999999999999999987655 9999999766442 2578889998865432222221110 00
Q ss_pred cHHH-HHhhcCceEEEEEecCCChh
Q 000874 281 PQFT-KERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 281 ~~~l-~~~L~~kr~LlVLDdv~~~~ 304 (1243)
.+.. ..+-.+++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 0111 11235899999999996554
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0018 Score=83.35 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 163 LVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 163 ~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
.+++...+...+..+ ...+.++||+.++.++...|+.. ...-+.++|.+|+||||||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~-----~~l~~vigr~~ei~~~i~iL~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ-----GKLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc-----CCCCcCCCCHHHHHHHHHHHhcC---CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 444555554444433 33457999999999999999763 3345669999999999999999998754
No 154
>PRK06620 hypothetical protein; Validated
Probab=97.39 E-value=0.0005 Score=73.22 Aligned_cols=129 Identities=12% Similarity=-0.002 Sum_probs=72.0
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
+.+.|||++|+|||+||+++++.... .++.. . ... . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~-~~~----~-----------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------I-FFN----E-----------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------h-hhc----h-----------------------hHHh-
Confidence 66899999999999999997765321 22210 0 000 0 0011
Q ss_pred ceEEEEEecCCChhh--hHHHhcCCCCCCCCCeEEEEecccch-------hcccCCCcceEEecCCCCHHHHHHHHHHhh
Q 000874 291 MKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSRIVVTTRDKGV-------LEKFGVEEEKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 291 kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR~~~v-------~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
..-++++||++...+ +-.+...+. ..|..||+|++...- ...+... .+++++++++++..+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHH
Confidence 234688899975432 222211111 356789999874432 1222221 589999999999888887765
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCC
Q 000874 362 FEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 362 f~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
-... -.--+++..-|++++.|-
T Consensus 161 ~~~~--l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 161 SISS--VTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHcC--CCCCHHHHHHHHHHccCC
Confidence 3211 111133455555555543
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0022 Score=78.12 Aligned_cols=187 Identities=13% Similarity=0.185 Sum_probs=107.4
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-----cCce-EEEe---------e
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-----FEGR-CFMS---------D 246 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~-~~~~---------~ 246 (1243)
|.....++|-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +.+. |..+ +
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 345678999999999999998763 234568899999999999999999865321 0000 0000 0
Q ss_pred ccc-cccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEE
Q 000874 247 VRR-NSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIV 323 (1243)
Q Consensus 247 ~~~-~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrII 323 (1243)
+.. ......++.++.. +...+ ...-..+++-++|+|+++... .++.++..+....+.+.+|
T Consensus 90 v~~idgas~~~vddIr~-l~e~~---------------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQ-IKEEI---------------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred eEEecCcccCCHHHHHH-HHHHH---------------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 000 0000011111111 11100 000123456689999997654 4667766665545566666
Q ss_pred EEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 324 VTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 324 iTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
++|.+ ..+....... ...++.+.++.++..+.+...+...... -..+.+..|++.++|.+-.+
T Consensus 154 ~~tte~~kL~~tI~SR-c~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 154 FATTEVHKLPATIKSR-CQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EecCChHHhHHHHHHh-ceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 66543 3333222111 1578999999999888887766433221 12345667888888876533
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.36 E-value=0.0024 Score=71.32 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=69.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccc--CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
-|.++|.+|.||||+|+.++..+...- ....|+... ..+ +...+.+.. .......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~~----l~~~~~g~~----~~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RDD----LVGQYIGHT----APKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HHH----HhHhhcccc----hHHHHHHHHHc--
Confidence 578999999999999999988654321 111233211 111 111111110 00111112221
Q ss_pred CceEEEEEecCCCh-----------hhhHHHhcCCCCCCCCCeEEEEecccchhcccCCC------cceEEecCCCCHHH
Q 000874 290 RMKVLIVLDDVNKV-----------GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGVE------EEKIYGVNGLEFDE 352 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~------~~~~~~v~~L~~~e 352 (1243)
..-+|+||+++.. +..+.+...+.....+.+||+++...........+ -...+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358889999632 12344444444344556666666433221111110 01579999999999
Q ss_pred HHHHHHHhh
Q 000874 353 AFELFCNFA 361 (1243)
Q Consensus 353 a~~Lf~~~a 361 (1243)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988775
No 157
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.35 E-value=7.9e-05 Score=77.52 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCcEEEeccCCCCC------cchhhcCCCCCCEEeCcCCCCccc-----chhccCCCCCCEEeecCCCC
Q 000874 859 SSLKFLYISDCAVTE------IPQDIACLSSLTTLNLSGNNFESL-----PASIKQLSQLSSLYLKDCKM 917 (1243)
Q Consensus 859 ~~L~~L~Ls~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~L~L~~c~~ 917 (1243)
.+|+.+.+..|.+.. +-..+..+.+|+.|+|..|.++.. ...+...+.|+.|.+.+|-.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 466777777776652 122345567777777777766622 22334455577777777754
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.8e-05 Score=73.88 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=71.2
Q ss_pred CCcEEeecCCCCC--CcCCCccCCCCCCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCCCCChhhccCCCCCcEEE
Q 000874 788 GLEFLTVSGCSKL--DKLPDNIGNLKSLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLY 865 (1243)
Q Consensus 788 ~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 865 (1243)
.+..++|++|.+. ...+..+.....|...++++|.+..+|..+ -..++.++.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf------------------------t~kf~t~t~lN 83 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF------------------------TIKFPTATTLN 83 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH------------------------hhccchhhhhh
Confidence 3445666666532 122233444455556666666666555433 23456778888
Q ss_pred eccCCCCCcchhhcCCCCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCC
Q 000874 866 ISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKM 917 (1243)
Q Consensus 866 Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~ 917 (1243)
+++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|..
T Consensus 84 l~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 84 LANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 8888888888888888888888888888888887777777777777776653
No 159
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.003 Score=77.83 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=106.2
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc-CceEEEeeccccccCCCChHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-EGRCFMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~ 261 (1243)
.....++|.+.-++.|..++..+. -...+.++|..|+||||+|+.++..+-... +.... ...+.....
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~---------~~Cg~C~~C 81 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP---------EPCGKCELC 81 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC---------CCCcccHHH
Confidence 455779999999999999987642 235678999999999999999999754321 10000 001111111
Q ss_pred HHHHHhhhcccccccC--CCccHHHHHh---h-----cCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEeccc
Q 000874 262 KQMLSTILSEKLEVAG--PNIPQFTKER---V-----RRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTRDK 329 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~--~~~~~~l~~~---L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~ 329 (1243)
+.+...........+. ....+.+++. + .+++-++|+|+++.. +....|+..+........+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 1111110000000000 0001111111 1 244568899999865 34666665555434455555555443
Q ss_pred -chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 330 -GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 330 -~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
.+....... ...+++..++.++....+.+.+-..... -..+.+..+++.++|.+..+.
T Consensus 162 ~~llpTIrSR-c~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 162 QRVLPTIISR-CQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhhHHHHhh-eeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 333222111 1678889999998888777765332211 112447788889998776443
No 160
>CHL00181 cbbX CbbX; Provisional
Probab=97.33 E-value=0.0039 Score=69.61 Aligned_cols=130 Identities=12% Similarity=0.164 Sum_probs=70.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcc-c-CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSE-F-EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
..+.++|.+|+||||+|+.++...... + ...-|+.. ....+ ...+.+.. .......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v---------~~~~l----~~~~~g~~----~~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV---------TRDDL----VGQYIGHT----APKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe---------cHHHH----HHHHhccc----hHHHHHHHHHc-
Confidence 357899999999999999998864321 1 11112221 11122 11111100 00001112221
Q ss_pred cCceEEEEEecCCCh-----------hhhHHHhcCCCCCCCCCeEEEEecccchhccc--------CCCcceEEecCCCC
Q 000874 289 RRMKVLIVLDDVNKV-----------GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKF--------GVEEEKIYGVNGLE 349 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~~~v~~L~ 349 (1243)
..-+|+||+++.. +..+.+...+.....+.+||+++....+.... ..+ ..+++++++
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~--~~i~F~~~t 197 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA--NHVDFPDYT 197 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC--ceEEcCCcC
Confidence 2348999999642 22444544444344556677776543321111 122 679999999
Q ss_pred HHHHHHHHHHhhc
Q 000874 350 FDEAFELFCNFAF 362 (1243)
Q Consensus 350 ~~ea~~Lf~~~af 362 (1243)
.+|..+++...+-
T Consensus 198 ~~el~~I~~~~l~ 210 (287)
T CHL00181 198 PEELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887764
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0014 Score=82.21 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 163 LVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 163 ~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.+++...+...+-.. ...+.++||+.++.++...|.... ..-+.++|.+|+|||++|+.++.++.
T Consensus 168 ~l~~~~~~l~~~a~~-----g~~~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLARV-----GGIDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHHc-----CCCCcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 445555554443322 233569999999999999887742 23346899999999999999998754
No 162
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.30 E-value=0.0015 Score=70.00 Aligned_cols=193 Identities=13% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc--ccCceEEEeeccccccCCCChHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
|...+.++|-+..+..|.+.+.. ........+|++|.|||+-|++++.++-. -|.+++.-.+.+.. .++.-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGisv 104 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGISV 104 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----ccccc
Confidence 34567899999999999888865 45678889999999999999999986533 35544432222211 22221
Q ss_pred HHHHH--HHhhhcccccccCCCccHHHHHhhcCce-EEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEecccch-hc
Q 000874 260 LQKQM--LSTILSEKLEVAGPNIPQFTKERVRRMK-VLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTRDKGV-LE 333 (1243)
Q Consensus 260 l~~~l--l~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~ 333 (1243)
....+ .+++.......++.. .++ -.||||+++.. +.|..+......+...+|.|+.|-.-.. ..
T Consensus 105 vr~Kik~fakl~~~~~~~~~~~----------~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSDGYP----------CPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhhcCHHHHhhccccccCCC----------CCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 11111 111111110001100 112 47899999876 4488888777766777776655443322 11
Q ss_pred ccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chhHHHHhh
Q 000874 334 KFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN-PLVLKVLGS 394 (1243)
Q Consensus 334 ~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl-PLal~~~g~ 394 (1243)
.. +..-..|.-++|.+++..+-+...|-..+..- ..+..+.|+++++|- --|+.++-+
T Consensus 175 pi-~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 175 PL-VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HH-HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 11115688899999999888888875443322 234577888888884 445554433
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.0024 Score=82.67 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=41.7
Q ss_pred CCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..+.+|||+.++.++...|+.. ...-+.++|.+|+|||++|+.++.++...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR---TKNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC---CCCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 4457999999999999999763 23445689999999999999999987543
No 164
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0022 Score=79.01 Aligned_cols=178 Identities=11% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-----------------------cC
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-----------------------FE 239 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~ 239 (1243)
...+.+||-+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+-.. |+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 45678999999999999998753 234568899999999999999998865311 21
Q ss_pred ceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCC
Q 000874 240 GRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYG 317 (1243)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 317 (1243)
...+ . . ... .++.+++. ++.++... -..+++=++|+|+++... ..+.|+..+....
T Consensus 92 ~~~l-d---~-~~~-~~vd~Ir~-li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHEL-D---A-ASN-NSVDDIRN-LIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEEe-c---c-ccc-CCHHHHHH-HHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1111 0 0 000 12222221 11111100 012345578999997654 3566665555445
Q ss_pred CCCeEEEEe-cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 318 PGSRIVVTT-RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 318 ~gsrIIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
..+.+|++| +...+....... ..++++++++.++....+...+-..+.. -..+.+..|+..++|-.-
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SR-c~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSR-CQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhh-hheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 566666555 444444332211 1689999999999988888765332221 122346778888888654
No 165
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.28 E-value=0.0016 Score=77.75 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=90.5
Q ss_pred CCCcccchhhHHhHHHhh---ccC----CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCCh
Q 000874 185 SNGLVGLNSRIEQIKPFL---CMD----LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGL 257 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L---~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l 257 (1243)
.+++.|.+...+.+.... ... .-...+-|.++|++|.|||.+|+++++.+.-.| +..+.........+-
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 356778776665554321 110 003356688999999999999999999765332 111111100000000
Q ss_pred HHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--------------hHHHhcCCCCCCCCCeEE
Q 000874 258 EHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--------------LEGLIGGLDQYGPGSRIV 323 (1243)
Q Consensus 258 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gsrII 323 (1243)
. ...+.+.++..-...+++|++|+++.... +..+...+.....+--||
T Consensus 303 s------------------e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 303 S------------------ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred H------------------HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 0 00011112211234689999999964210 112222222222334455
Q ss_pred EEecccchh-----cccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 000874 324 VTTRDKGVL-----EKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 324 iTTR~~~v~-----~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP 386 (1243)
.||.+.... .....+ ..+.++..+.++..++|..+.-+....... ......+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD--~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFD--EIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCC--eEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 677655422 222345 789999999999999998886442211000 111345556666653
No 166
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0027 Score=76.48 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=86.2
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccC--ceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFE--GRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
..+.|+|..|.|||.|++++++.....+. .+.|+. ..++...+...+... ..+.+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 34899999999999999999998765432 234442 234444444433221 112244444
Q ss_pred cCceEEEEEecCCChh---hhH-HHhcCCCCC-CCCCeEEEEeccc---------chhcccCCCcceEEecCCCCHHHHH
Q 000874 289 RRMKVLIVLDDVNKVG---QLE-GLIGGLDQY-GPGSRIVVTTRDK---------GVLEKFGVEEEKIYGVNGLEFDEAF 354 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~~---~~~-~l~~~~~~~-~~gsrIIiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~ 354 (1243)
+. -=+|||||++... .|+ .+...+... ..|..|||||+.. .+...+... .+++++..+.+...
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRI 452 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHH
Confidence 43 3478889996442 222 222222111 3456788888753 122223232 68999999999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000874 355 ELFCNFAFEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 355 ~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
+++.+++-.... .--.++..-|++.+.+.
T Consensus 453 aIL~kka~~r~l--~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 453 AILRKKAVQEQL--NAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHHHhccCC
Confidence 999988743221 11234445555554443
No 167
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.26 E-value=0.0043 Score=67.10 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=28.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
...+.++|.+|+|||+||.++++.+..+-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788999999999999999999876654455555
No 168
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.26 E-value=0.00037 Score=52.99 Aligned_cols=40 Identities=28% Similarity=0.506 Sum_probs=33.5
Q ss_pred CCCCEEeCcCCCCcccchhccCCCCCCEEeecCCCCCCcCC
Q 000874 882 SSLTTLNLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 882 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
++|++|+|++|+|+.+|..+.+|++|+.|++++|+.. .++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 5799999999999999988999999999999999743 444
No 169
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00044 Score=69.44 Aligned_cols=104 Identities=24% Similarity=0.224 Sum_probs=63.3
Q ss_pred CCcceEEecccCcccccccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCc--ccccccCCcEE
Q 000874 715 LTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPS--SFENLLGLEFL 792 (1243)
Q Consensus 715 l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L 792 (1243)
+.+...+||++|.+... +. |..++.|.+|.|.+|.+...-|..-.-+++|+.|.|.+|++.++.+ .+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc-cc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 44556677776653322 22 4457777777777777777666666666777777777777776543 25566777777
Q ss_pred eecCCCCCCcCC---CccCCCCCCcEEEccC
Q 000874 793 TVSGCSKLDKLP---DNIGNLKSLDFIAAVG 820 (1243)
Q Consensus 793 ~L~~~~~~~~lp---~~l~~l~~L~~L~l~~ 820 (1243)
.+-+|+....-- ..+..+|+|+.||..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777766443211 2344555666665544
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0044 Score=70.43 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=89.2
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------CceEEEeeccccccCCCChHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGRCFMSDVRRNSETGGGLEHLQKQMLS 266 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 266 (1243)
.-...+.++|+.|+||||+|+.++..+-.+- +...++.. +.....-.++++.+ +..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~--~~~~~~i~id~iR~-l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP--EEADKTIKVDQVRE-LVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec--cCCCCCCCHHHHHH-HHH
Confidence 3456788999999999999999998653221 11111110 00000012222222 211
Q ss_pred hhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEecccc-hhcccCCCcceEE
Q 000874 267 TILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDKG-VLEKFGVEEEKIY 343 (1243)
Q Consensus 267 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~ 343 (1243)
.+... -...+.|++ |+|+++... ....++..+..-.+++.+|+||.+.. +....... ...+
T Consensus 97 ~~~~~--------------~~~~~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR-c~~~ 160 (328)
T PRK05707 97 FVVQT--------------AQLGGRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR-CQQQ 160 (328)
T ss_pred HHhhc--------------cccCCCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh-ceee
Confidence 11100 011234544 679998653 35555554444456777887777654 33222211 1679
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 344 GVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 344 ~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.+.+++.+++.+.+.... .. . ..+.+..++..++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~-~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL-PE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhc-cc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999887653 11 1 1233567788999999755444
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.22 E-value=0.0015 Score=64.05 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHh
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999875
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.21 E-value=0.00083 Score=74.22 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=57.0
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
.-+.++|..|+|||.||.++++.+..+-..++|+. ...+...+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 45789999999999999999998876644444542 233344433332211 11111224444554
Q ss_pred ceEEEEEecCC--ChhhhH--HHhcCCCC-CCCCCeEEEEecc
Q 000874 291 MKVLIVLDDVN--KVGQLE--GLIGGLDQ-YGPGSRIVVTTRD 328 (1243)
Q Consensus 291 kr~LlVLDdv~--~~~~~~--~l~~~~~~-~~~gsrIIiTTR~ 328 (1243)
-. ||||||+. ....|. .+...+.. ...|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 89999993 233332 22222221 1356679999863
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0047 Score=70.80 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=82.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
....+.|||..|.|||.|++++.+......+...++. -........+...+..+. .+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~~--------~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDNE--------MEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhhh--------HHHHHHhh
Confidence 4667999999999999999999998877776444442 122334444444433211 12255554
Q ss_pred cCceEEEEEecCCChhh---h-HHHhcCCCCC-CCCCeEEEEecccc---------hhcccCCCcceEEecCCCCHHHHH
Q 000874 289 RRMKVLIVLDDVNKVGQ---L-EGLIGGLDQY-GPGSRIVVTTRDKG---------VLEKFGVEEEKIYGVNGLEFDEAF 354 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~~~---~-~~l~~~~~~~-~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea~ 354 (1243)
.-=++++||++-... | +++...+... ..|-.||+|++... +...++.. -++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHHHH
Confidence 334888999954321 2 2222222111 23448999986432 22333333 78999999999999
Q ss_pred HHHHHhhcC
Q 000874 355 ELFCNFAFE 363 (1243)
Q Consensus 355 ~Lf~~~af~ 363 (1243)
.++.+.+-.
T Consensus 251 aiL~kka~~ 259 (408)
T COG0593 251 AILRKKAED 259 (408)
T ss_pred HHHHHHHHh
Confidence 999887643
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.16 E-value=0.0031 Score=77.85 Aligned_cols=175 Identities=15% Similarity=0.229 Sum_probs=97.5
Q ss_pred CCCCcccchhhHHhHHHhhcc---CC------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCC
Q 000874 184 SSNGLVGLNSRIEQIKPFLCM---DL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETG 254 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~---~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 254 (1243)
..++++|.+...+++.+.+.. .. ..-.+-|.++|++|.|||++|++++......| +..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~i-------- 247 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FSI-------- 247 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----eec--------
Confidence 446788988877776665422 11 02245689999999999999999998653222 210
Q ss_pred CChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh----------------hhHHHhcCCCCC--
Q 000874 255 GGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG----------------QLEGLIGGLDQY-- 316 (1243)
Q Consensus 255 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~-- 316 (1243)
...++...... .....+...+.......+++|+|||++... .+..++..+..+
T Consensus 248 -s~s~f~~~~~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 248 -SGSEFVEMFVG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -cHHHHHHHhhh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 00111111100 000011122444445678999999996431 133444333322
Q ss_pred CCCCeEEEEecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000874 317 GPGSRIVVTTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 317 ~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
..+-.||.||...+.... ...+ ..+.++..+.++..+++..++-..... .......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd--~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFD--RQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCc--eEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 245566667765443221 1234 678999999999999998887432111 112245566666663
No 175
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0031 Score=77.63 Aligned_cols=186 Identities=13% Similarity=0.178 Sum_probs=103.3
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc-c-Cc----eE-------------E
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-EG----RC-------------F 243 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~----~~-------------~ 243 (1243)
...+.+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . .. .| |
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 45678999998889999988753 234567899999999999999999865321 0 00 00 0
Q ss_pred EeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCe
Q 000874 244 MSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSR 321 (1243)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsr 321 (1243)
+. +.. ... .++.++. ++...+.. .-..+++-++|+|+|+... ....|+..+....+.+.
T Consensus 91 ~e-id~-~s~-~~v~~ir-~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 91 FE-IDG-ASN-TGVDDIR-ELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred ee-eec-cCc-cCHHHHH-HHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 00 000 000 1222221 11111110 0012345578899997654 35555554444445666
Q ss_pred EEEEe-cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hhHHHH
Q 000874 322 IVVTT-RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP-LVLKVL 392 (1243)
Q Consensus 322 IIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP-Lal~~~ 392 (1243)
+|++| ....+....... ...+++..++.++....+...+-..+.. -..+....+++.++|.. .|+..+
T Consensus 152 fIl~t~~~~kl~~tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITILSR-CQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66555 444444322111 1578889999998887776654322211 11344667788888854 344433
No 176
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0089 Score=73.25 Aligned_cols=191 Identities=12% Similarity=0.095 Sum_probs=104.4
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 261 (1243)
|...+.+||.+.-++.+.+.+..+. -.+..-++|+.|+||||+|+.++..+-..-.. .. .+.+.....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~---------~~-~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP---------DG-EPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---------CC-CCCCccHHH
Confidence 3456789999999999999987642 35667789999999999999998865321000 00 000111111
Q ss_pred HHHHHhhhcccccccCC--Ccc---HHHHHh-----hcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEe-cc
Q 000874 262 KQMLSTILSEKLEVAGP--NIP---QFTKER-----VRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTT-RD 328 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~~--~~~---~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT-R~ 328 (1243)
+.+......+-...++. .-. ..+.+. ..+++-++|+|+++.. ..+..|+..+........+|++| ..
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 11111000000000100 000 111121 2345668899999865 34666665554334455555544 43
Q ss_pred cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 000874 329 KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 329 ~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPL 387 (1243)
..+....... ...++...++.++..+.+...+-..+... ..+.+..+++.++|-+.
T Consensus 160 ~ki~~tI~SR-c~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 160 HKIPATILSR-CQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMR 215 (559)
T ss_pred hhCcHHHHhH-heEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 3333222111 15788999999998888877663322111 13446677888888665
No 177
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.14 E-value=0.00076 Score=65.76 Aligned_cols=88 Identities=23% Similarity=0.384 Sum_probs=44.0
Q ss_pred ccEEEccccccccCchHHHHHHHHhhcC-------Cce----------eeecCccccCCCcchHHHHHHhhhcceeEEee
Q 000874 9 YDVFLSFRGVDTRASFTCHLYDSLFERK-------KIR----------TFIDDEELRQGDAISPVLLNAIQGSKISLIIF 71 (1243)
Q Consensus 9 ~dvF~sf~g~d~r~~f~~~L~~~L~~~~-------gi~----------~f~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~ 71 (1243)
|.|||||+..|-. .....|.+.+ ... .+. .+.+..+....+.|...|.++|++|.+.||++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWL-ENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------THH--HHHHHHHHH-HH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccCcH-HHHHHHHHHh-ccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 6899999999832 2555565555 442 221 11233334455689999999999999999999
Q ss_pred ccCcccchhhHHHHHHHHHhHhcCCCEEEeE
Q 000874 72 SKDYASSKWCLNELVKILECKNTNGQIVIPV 102 (1243)
Q Consensus 72 s~~y~~s~wcl~el~~i~~~~~~~~~~v~Pv 102 (1243)
+++=+.|+|+-.|+...++ .+..|+-|
T Consensus 79 g~~T~~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp -TT----HHHHHHHHHHTT----T---EEEE
T ss_pred CCCcccCcHHHHHHHHHHH----CCCCEEEE
Confidence 9999999999999987765 33335555
No 178
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.0043 Score=72.68 Aligned_cols=121 Identities=23% Similarity=0.232 Sum_probs=77.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRM 291 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 291 (1243)
++.|.|+-++||||+++.+.....+. .+++......... ..+.+..+.. .... ..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~~-------------------~~~~-~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRAY-------------------IELK-ERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHHH-------------------HHhh-ccC
Confidence 99999999999999997776655444 4444321111111 1111111111 1111 117
Q ss_pred eEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchhcccC----CCcceEEecCCCCHHHHHHHH
Q 000874 292 KVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKFG----VEEEKIYGVNGLEFDEAFELF 357 (1243)
Q Consensus 292 r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~----~~~~~~~~v~~L~~~ea~~Lf 357 (1243)
+..|+||.|.....|+..+..+...++. +|+||+-+..+...-. +.....+++-+|+-.|-..+-
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8899999999999999888777766666 8888887665433211 112378999999999977654
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.0021 Score=68.78 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH-H-hcccCceE
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ-F-SSEFEGRC 242 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~ 242 (1243)
...+.++......+..++.. ..+|.+.|.+|.|||+||.++..+ + ...|+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 35577888888888887753 249999999999999999998884 4 34444433
No 180
>PRK12377 putative replication protein; Provisional
Probab=97.06 E-value=0.0068 Score=65.74 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=29.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
...+.++|..|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998876655556653
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00013 Score=90.50 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCcceEEecccCccccc-cccccc-ccCccceeecccccCc-CcCchhhhcCCcccEeeccccCccccCcccccccCCcE
Q 000874 715 LTDLVELDLRDCKRLKR-ISTRFC-KLKSLVKLCLDDCLNL-ERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEF 791 (1243)
Q Consensus 715 l~~L~~L~L~~~~~l~~-lp~~~~-~l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 791 (1243)
-.+|++|++++...... -|..++ .||+|+.|.+++-... ..+.....++++|..||+++++++.+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35677777777543322 122222 3788888888774432 23445566788888888888888877 66888888888
Q ss_pred EeecCCCCCC-cCCCccCCCCCCcEEEccCCCCc
Q 000874 792 LTVSGCSKLD-KLPDNIGNLKSLDFIAAVGSAIS 824 (1243)
Q Consensus 792 L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~i~ 824 (1243)
|.+.+-.+.. ..-..+.+|++|+.||++.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 8887644332 11124566777777777765443
No 182
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.015 Score=63.98 Aligned_cols=200 Identities=18% Similarity=0.271 Sum_probs=116.4
Q ss_pred CCCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecccccc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSE 252 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 252 (1243)
.....+=|.+.++++|.+.....- -+.++=|-++|++|.|||-||++|+++.... |+..++.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS--- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS--- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH---
Confidence 334556678888888887654321 1345668899999999999999999986544 4443321
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh-cCceEEEEEecCCChh--------------h--hHHHhcCCCC
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV-RRMKVLIVLDDVNKVG--------------Q--LEGLIGGLDQ 315 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~ 315 (1243)
++.+..+. ++..+...+-+.- ...+..|.+|.++... | .-+|+..++.
T Consensus 220 ------ElVqKYiG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 220 ------ELVQKYIG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ------HHHHHHhc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 12222111 1222322222222 3457899999884321 1 3355556665
Q ss_pred CCC--CCeEEEEecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCch
Q 000874 316 YGP--GSRIVVTTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENH-CPEDLNWHSRRVVWYATSNPL 387 (1243)
Q Consensus 316 ~~~--gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~glPL 387 (1243)
|.+ .-|||..|...+++.- -..+ ..++++..+.+.-.++|.-|+-+-.- ..-++ +.+++.+.|.-=
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~D--RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sG 358 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFD--RKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSG 358 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCccc--ceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCch
Confidence 543 4588888876655433 2355 78999988888888999888754322 12233 345556666543
Q ss_pred ----hHHHHhhhhC--C-C---CHHHHHHHHHHH
Q 000874 388 ----VLKVLGSSLC--L-K---RKSHWENVLDDL 411 (1243)
Q Consensus 388 ----al~~~g~~L~--~-~---~~~~w~~~l~~l 411 (1243)
|+.+=|++++ . + +.+.+..+.++.
T Consensus 359 AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 359 ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 3444444443 1 1 445555555543
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.0055 Score=75.07 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=43.9
Q ss_pred CCCCCCCcccchhhHHhHHHhhccCC--CCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 181 STDSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.|...++++|-+..++++..++.... ....+++.|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556789999999999999986532 13456899999999999999999998643
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.00 E-value=0.0053 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=40.7
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
....++||-++.++.+.-.-.. .+++-+.|.||+|+||||-+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4456799999999988776654 5678888999999999998888888643
No 185
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.00 E-value=4.9e-05 Score=79.00 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=23.3
Q ss_pred CCCCcEEEeccCCCCC-------cchh-hcCCCCCCEEeCcCCCCcccc
Q 000874 858 LSSLKFLYISDCAVTE-------IPQD-IACLSSLTTLNLSGNNFESLP 898 (1243)
Q Consensus 858 l~~L~~L~Ls~~~l~~-------lp~~-l~~l~~L~~L~Ls~n~l~~lp 898 (1243)
.|+|..|-..+|.... ++.. -..+|-|..|.+.||++....
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 4556666666554331 1111 135677777888888877544
No 186
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.98 E-value=0.018 Score=60.94 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCCCCCcccchhhHHhHHHhh---ccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 182 TDSSNGLVGLNSRIEQIKPFL---CMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
+...+.++|.+.+.+.|.+-. ..+ ....-|-+||..|.|||++++++.+++..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345568999999998876422 222 345567789999999999999999987654
No 187
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.97 E-value=0.0044 Score=75.49 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=93.5
Q ss_pred CCCCCcccchhhHHhHHHhhcc---C------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCM---D------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET 253 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~---~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 253 (1243)
...++++|.+...+++.+++.. . .....+-+.++|++|.|||++|++++......| +.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-------- 118 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-------- 118 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee--------
Confidence 3445688888777666554431 0 012334588999999999999999998653322 11
Q ss_pred CCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh----------------hhHHHhcCCCCC-
Q 000874 254 GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG----------------QLEGLIGGLDQY- 316 (1243)
Q Consensus 254 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 316 (1243)
....++...... . ....+...+.......+.+|+|||++... .+..++..+...
T Consensus 119 -i~~~~~~~~~~g----~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 119 -ISGSDFVEMFVG----V----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred -ccHHHHHHHHhc----c----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 001111111100 0 00011122333334567899999995431 122333333222
Q ss_pred -CCCCeEEEEecccchhc-----ccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000874 317 -GPGSRIVVTTRDKGVLE-----KFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 317 -~~gsrIIiTTR~~~v~~-----~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
..+-.||.||....... ....+ ..++++..+.++..++|..+.-+..... . .....+++.+.|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd--~~i~i~~Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFD--RQVVVDLPDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGF 259 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcce--EEEEcCCCCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCC
Confidence 23445556665543221 12244 6899999999999999988764322211 1 1134677777764
No 188
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.017 Score=65.32 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=105.0
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------cCceEEEeecccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------FEGRCFMSDVRRN 250 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------F~~~~~~~~~~~~ 250 (1243)
+.++|-+.-++.+.+.+..+ .-....-++|+.|+||+++|.++++.+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46899999999999988764 234788999999999999999999865322 2222333211000
Q ss_pred ccCCCChHHHHHHHHHhhh--cccccccCCCccHHHHHhh-----cCceEEEEEecCCChhh--hHHHhcCCCCCCCCCe
Q 000874 251 SETGGGLEHLQKQMLSTIL--SEKLEVAGPNIPQFTKERV-----RRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSR 321 (1243)
Q Consensus 251 ~~~~~~l~~l~~~ll~~l~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsr 321 (1243)
.. ..+ ....+...+ ......-..+....+.+.+ .+++-++|+|+++.... ...++..+.... .+.
T Consensus 82 ~g--~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QG--KLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cc--ccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 00 000 000000000 0000000000011222222 34567889999876543 444444443333 345
Q ss_pred EEEEe-cccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 000874 322 IVVTT-RDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKV 391 (1243)
Q Consensus 322 IIiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~ 391 (1243)
+|++| +...+....... ...+++.++++++..+.+....... ........++..++|-|..+..
T Consensus 156 fILi~~~~~~Ll~TI~SR-cq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 156 LILIAPSPESLLPTIVSR-CQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEEECChHhCcHHHHhh-ceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHH
Confidence 55555 444444433222 2789999999999999998764211 1111135788999999975543
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=8.2e-05 Score=69.61 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=68.5
Q ss_pred cceEEecccCcccc--cccccccccCccceeecccccCcCcCchhhhcCCcccEeeccccCccccCcccccccCCcEEee
Q 000874 717 DLVELDLRDCKRLK--RISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITELPSSFENLLGLEFLTV 794 (1243)
Q Consensus 717 ~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 794 (1243)
.+..++|+.|.+.. ..+..+.....|...+|++|.+....+......+.++.|+|.+|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34456666665321 1222233445555666776654433333334455777777777777777777777777777777
Q ss_pred cCCCCCCcCCCccCCCCCCcEEEccCCCCccCCcc
Q 000874 795 SGCSKLDKLPDNIGNLKSLDFIAAVGSAISQLPSS 829 (1243)
Q Consensus 795 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~l~~~ 829 (1243)
+.|++. ..|..+..|.+|..|+..+|.+..+|..
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 776643 3455555677777777777777766654
No 190
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.92 E-value=0.0015 Score=71.06 Aligned_cols=93 Identities=22% Similarity=0.320 Sum_probs=59.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh-hhccccc-c---cCCCc----
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEKLE-V---AGPNI---- 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~---~~~~~---- 280 (1243)
-..++|.|..|.||||||+.++++++.+|+..+++..+++.. ..+.++.+.+... ......- . +....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999999999999988888888887665533 3455666665543 1111100 0 11111
Q ss_pred ----cHHHHHhh---cCceEEEEEecCCChhh
Q 000874 281 ----PQFTKERV---RRMKVLIVLDDVNKVGQ 305 (1243)
Q Consensus 281 ----~~~l~~~L---~~kr~LlVLDdv~~~~~ 305 (1243)
.-.+.+++ +++++|+|+||+-...+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 01123444 38899999999865543
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.0014 Score=64.86 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=27.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
+.+.|+|++|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999776554334444
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0068 Score=66.73 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=25.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
...|.|+|++|+|||+||.++......+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45688999999999999999988654333233343
No 193
>PRK06526 transposase; Provisional
Probab=96.90 E-value=0.0036 Score=68.42 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=24.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..+-+.++|++|+|||+||.++..+...+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 34568999999999999999999876543
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0016 Score=65.55 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=71.7
Q ss_pred ceecccCCcccccccccccCCcceEEecccCcccccccccccccCccceeecccccCcCc-CchhhhcCCcccEeecccc
Q 000874 696 TRLYLSQSAIEEVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLER-FPEILEEMEHLKRIYLERT 774 (1243)
Q Consensus 696 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~L~~n 774 (1243)
..++|++|.+..++. +..++.|.+|.|.+|.++..-|.--.-+++|..|.|.+|++... --+-+..++.|++|.+-+|
T Consensus 45 d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 346666666665543 55678888888888887776665444467788888888776542 1234567788999999888
Q ss_pred CccccCcc----cccccCCcEEeecCCC
Q 000874 775 AITELPSS----FENLLGLEFLTVSGCS 798 (1243)
Q Consensus 775 ~l~~lp~~----l~~l~~L~~L~L~~~~ 798 (1243)
.++.-..- +..+++|+.||+.+-.
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhhhh
Confidence 88765432 6778899999987643
No 195
>PRK08181 transposase; Validated
Probab=96.84 E-value=0.0036 Score=68.78 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=27.3
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.-+.++|++|+|||.||.++.+....+.-.+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999999776554445554
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.013 Score=75.11 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET 253 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 253 (1243)
..+++.|++..++++.+++... .-...+-|.++|++|.||||||+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3456889999998888776321 002346688999999999999999999765433 1221 0000000
Q ss_pred CCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh-------------hhHHHhcCCCCC-CCC
Q 000874 254 GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG-------------QLEGLIGGLDQY-GPG 319 (1243)
Q Consensus 254 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~g 319 (1243)
..+. .. ..+...+.......+.+|+||+++... ....+...+... ..+
T Consensus 252 ~~g~--~~----------------~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 252 YYGE--SE----------------ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred cccH--HH----------------HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 0000 00 001111223334556799999985421 122333322222 233
Q ss_pred CeEEE-Eecccc-hhccc----CCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 000874 320 SRIVV-TTRDKG-VLEKF----GVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 320 srIIi-TTR~~~-v~~~~----~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP 386 (1243)
..++| ||.... +.... ..+ ..+.+...+.++..+++..+.-+..... ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd--~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFD--REIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhcc--EEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 34444 444332 11111 123 5688888899998888886542211111 112456667777754
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.011 Score=76.17 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=39.4
Q ss_pred CCCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 185 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
...++|-+..++.+...+... .+.....+.++|+.|+|||++|+++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346889999998888777532 1122357889999999999999999986543
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.74 E-value=0.018 Score=63.14 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCcccchh---hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceE-EEeeccccccCCCChHHHH
Q 000874 186 NGLVGLNS---RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC-FMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 186 ~~~vGr~~---~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~~~~~~~l~~l~ 261 (1243)
+..||-.. -++.+.++|........+-+.|+|..|+|||++++++...+-..++.-. .+.++.-......+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 34566543 3455667776655456677999999999999999999986554443211 0011111122237888999
Q ss_pred HHHHHhhhcccccccCCC-ccHHHHHhhcC-ceEEEEEecCCChh-----hhHHHhc---CCCCCCCCCeEEEEecc---
Q 000874 262 KQMLSTILSEKLEVAGPN-IPQFTKERVRR-MKVLIVLDDVNKVG-----QLEGLIG---GLDQYGPGSRIVVTTRD--- 328 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~---~~~~~~~gsrIIiTTR~--- 328 (1243)
..|+.+++......+... ....+.+.++. +-=+||+|.+.+.- +-..++. .+...-.-+-|.+-|++
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 999999876543332222 22233344443 23488999996632 1111111 11111233445555543
Q ss_pred -----cchhcccCCCcceEEecCCCCHH-HHHHHHHHhhc--CCCC-CCchHHHHHHHHHHHhCCCchhH
Q 000874 329 -----KGVLEKFGVEEEKIYGVNGLEFD-EAFELFCNFAF--EENH-CPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 329 -----~~v~~~~~~~~~~~~~v~~L~~~-ea~~Lf~~~af--~~~~-~~~~~~~l~~~i~~~~~glPLal 389 (1243)
.+++..+ ..+.++....+ |..+|+..... .-.. ..-...+++..|...++|+.--+
T Consensus 194 al~~D~QLa~RF-----~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 194 ALRTDPQLASRF-----EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HhccCHHHHhcc-----CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 3333333 45667777655 44444433221 1111 11234678889999999975433
No 199
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.72 E-value=0.041 Score=61.74 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=27.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
.-++.++|||++|.|||.+|++++.+....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 5678999999999999999999999876543
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.72 E-value=0.0016 Score=67.16 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=25.6
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
..-+.++|..|+|||.||.++.++...+=..+.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 35689999999999999999998765543445555
No 201
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.70 E-value=0.0035 Score=72.62 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=42.0
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc--ccCceEEEe
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEGRCFMS 245 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 245 (1243)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .|..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4577888888888888864 346788999999999999999997653 345555553
No 202
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.018 Score=65.98 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=85.1
Q ss_pred Cccc-chhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc---------------------cCceEEE
Q 000874 187 GLVG-LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGRCFM 244 (1243)
Q Consensus 187 ~~vG-r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 244 (1243)
.++| -+.-++.+...+..+ .-....-++|+.|+||||+|+.+.+.+-.. ++...++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 3566 455566777777543 335667899999999999999998865321 1111111
Q ss_pred eeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCCCeE
Q 000874 245 SDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSRI 322 (1243)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrI 322 (1243)
.. .... -.+.++.. +...+.. ....+.+=++|+|+++.... ...++..+....+++.+
T Consensus 84 ~~---~~~~-i~id~ir~-l~~~~~~---------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 AP---DGQS-IKKDQIRY-LKEEFSK---------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cc---cccc-CCHHHHHH-HHHHHhh---------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 10 0000 11111111 1111100 00223455789999876533 55566555555667778
Q ss_pred EEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHh
Q 000874 323 VVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNF 360 (1243)
Q Consensus 323 IiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 360 (1243)
|++|.+.. +....... ...+++.+++.++..+.+...
T Consensus 144 Il~t~~~~~ll~TIrSR-c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSR-CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhh-ceeeeCCCCCHHHHHHHHHHc
Confidence 87776543 33222111 178999999999998888654
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.69 E-value=0.013 Score=74.82 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.5
Q ss_pred CCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 186 NGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..++|-+..++.+.+.+... .+....++.++|+.|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46889998888888776531 112345688999999999999999998763
No 204
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.014 Score=68.68 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
...+|.++|.+|+||||.|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 47899999999999999999999877654
No 205
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.016 Score=61.79 Aligned_cols=260 Identities=18% Similarity=0.225 Sum_probs=134.0
Q ss_pred CCCCCCcccchhhHHhHHHhhccCC--CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
|....+|||-+.-.+++.-.+.... +...--|.++|++|.||||||.-+++.+...+... .+..-+++.++.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDla- 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLA- 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHH-
Confidence 3455679999988888877665432 24456789999999999999999999876543211 011111111111
Q ss_pred HHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh-hHHHh-cCCC--------CCCCCCe--------
Q 000874 260 LQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ-LEGLI-GGLD--------QYGPGSR-------- 321 (1243)
Q Consensus 260 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~~~l~-~~~~--------~~~~gsr-------- 321 (1243)
.++.. |+... ++.+|.+..... .++++ +... ..|+++|
T Consensus 96 ---aiLt~--------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 96 ---AILTN--------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---HHHhc--------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 11111 22222 334565543321 11111 1111 1244444
Q ss_pred ---EEEEecccchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhhCC
Q 000874 322 ---IVVTTRDKGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCL 398 (1243)
Q Consensus 322 ---IIiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~ 398 (1243)
|=-|||.-.+..-+.-.=..+.+++.-+.+|-.+...+.|-.-. -+-..+-+.+|+++..|-|--..-+-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 33588876554332111114678888899999999988873211 122234588999999999963332222211
Q ss_pred CCHHHHHHHHHHHhhccCcc-hhhhHhHHhhccccCchhhhhhhheeccccCCC--CHHHHHHHHhhc----ccchhhhc
Q 000874 399 KRKSHWENVLDDLNRICESE-IHDIYDILKISFNELIPREKSMFLDIACFFEGE--DKDILMRILDDS----ESYALGVL 471 (1243)
Q Consensus 399 ~~~~~w~~~l~~l~~~~~~~-i~~v~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~l~~~----~~~~~~~L 471 (1243)
++..+... .....+ .......|.+-=.+|+...++.+..+.-.+.|- -++.+...+... .+.+=-.|
T Consensus 229 ----Dfa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 229 ----DFAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred ----HHHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 11111100 000000 011244555555567777776666655555333 334444443321 11112247
Q ss_pred ccccceEEc
Q 000874 472 IDKSLITIS 480 (1243)
Q Consensus 472 ~~~sLi~~~ 480 (1243)
+..++++..
T Consensus 303 iq~gfi~RT 311 (332)
T COG2255 303 IQQGFIQRT 311 (332)
T ss_pred HHhchhhhC
Confidence 788888776
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.042 Score=62.03 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=93.6
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE 274 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~ 274 (1243)
.+.+.+.+..+ .-.....+.|+.|+||+++|++++..+-..-... ....+.-.--+.+...- ..+..
T Consensus 11 ~~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~----------~~~Cg~C~sC~~~~~g~-HPD~~ 77 (325)
T PRK06871 11 YQQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG----------DQPCGQCHSCHLFQAGN-HPDFH 77 (325)
T ss_pred HHHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHhcCC-CCCEE
Confidence 34555555543 2345778999999999999999998653211000 00000000111111000 00000
Q ss_pred -c---cCCCc-cHHHH---Hhh-----cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEeccc-chhcccCCC
Q 000874 275 -V---AGPNI-PQFTK---ERV-----RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLEKFGVE 338 (1243)
Q Consensus 275 -~---~~~~~-~~~l~---~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~ 338 (1243)
. ++..+ .+.++ +.+ .+++=++|+|+++... ....++..+..-.+++.+|++|.+. .++......
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0 01011 11222 222 2455678899998764 3555655555556677777777665 344332211
Q ss_pred cceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhH
Q 000874 339 EEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 339 ~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal 389 (1243)
...+.+.+++++++.+.+..... .+ ...+...+..++|.|+..
T Consensus 158 -C~~~~~~~~~~~~~~~~L~~~~~-----~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 -CQTWLIHPPEEQQALDWLQAQSS-----AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred -ceEEeCCCCCHHHHHHHHHHHhc-----cC--hHHHHHHHHHcCCCHHHH
Confidence 16899999999999988877641 11 112556788899999633
No 207
>PRK07261 topology modulation protein; Provisional
Probab=96.64 E-value=0.0058 Score=62.80 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.60 E-value=0.034 Score=71.30 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=94.3
Q ss_pred CCCcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCC
Q 000874 185 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETG 254 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 254 (1243)
-..+.|.+...++|.+.+... .....+-|.++|++|.|||++|+++++.....| +.. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v-~~----- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAV-RG----- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEE-eh-----
Confidence 356788888877777765321 012345588999999999999999999765433 211 00
Q ss_pred CChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--------------hhHHHhcCCCCC--CC
Q 000874 255 GGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--------------QLEGLIGGLDQY--GP 318 (1243)
Q Consensus 255 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~ 318 (1243)
.++ +... .......+...+...-...+.+|++|+++... ....++..++.. ..
T Consensus 521 ---~~l----~~~~----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 ---PEI----LSKW----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ---HHH----hhcc----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 011 1100 00000001111222223557899999985421 123344333322 23
Q ss_pred CCeEEEEecccchhccc-----CCCcceEEecCCCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCc
Q 000874 319 GSRIVVTTRDKGVLEKF-----GVEEEKIYGVNGLEFDEAFELFCNFAFEENHC-PEDLNWHSRRVVWYATSNP 386 (1243)
Q Consensus 319 gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~glP 386 (1243)
+-.||.||...+..... ..+ ..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd--~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFD--RLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccc--eEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 44566667655443221 234 788999999999999998765332211 112 345556666653
No 209
>PRK08118 topology modulation protein; Reviewed
Probab=96.59 E-value=0.0056 Score=62.55 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc---ccCceEE
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSS---EFEGRCF 243 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 243 (1243)
.|.|+|++|+||||||++++++..- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997543 3565554
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.58 E-value=0.017 Score=74.83 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=40.2
Q ss_pred CCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 186 NGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..++|.+..++.+...+... .+....++.+.|+.|+|||++|+.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999988877542 11224678899999999999999999876443
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.05 Score=69.93 Aligned_cols=53 Identities=26% Similarity=0.393 Sum_probs=39.9
Q ss_pred CCcccchhhHHhHHHhhccC---CCCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
...+|.+.-.+.|.+++... .....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35789888888888766421 112345789999999999999999999875544
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.02 Score=68.06 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=89.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
..-|-|.|..|+|||+||+++++.+.. +..+++..+.+..-....+..+|+.+-.- +.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh
Confidence 456889999999999999999997763 34455554444433334566666655322 556667
Q ss_pred CceEEEEEecCCChh--------hhH----HHhcCC----C-CCCCCCe--EEEEecccchhc-----ccCCCcceEEec
Q 000874 290 RMKVLIVLDDVNKVG--------QLE----GLIGGL----D-QYGPGSR--IVVTTRDKGVLE-----KFGVEEEKIYGV 345 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~--------~~~----~l~~~~----~-~~~~gsr--IIiTTR~~~v~~-----~~~~~~~~~~~v 345 (1243)
..+-+|||||++-.. ||. .+...+ . ....+.+ +|-|.....-.. ..-.. .+..+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq--~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQ--IVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceE--EEEec
Confidence 788999999995321 111 111111 0 1123444 333433332211 11122 56788
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chhHHHH
Q 000874 346 NGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN-PLVLKVL 392 (1243)
Q Consensus 346 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl-PLal~~~ 392 (1243)
+.+...+..++++... ..+. .+...+...-+..+|+|. |.-++++
T Consensus 571 ~ap~~~~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CCcchhHHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 8888888877776653 2222 112222233377777774 4444444
No 213
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.068 Score=60.27 Aligned_cols=95 Identities=9% Similarity=0.110 Sum_probs=60.9
Q ss_pred CceEEEEEecCCChhh--hHHHhcCCCCCCCCCeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCC
Q 000874 290 RMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENH 366 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~ 366 (1243)
+++=++|+|+++.... -..++..+..-.+++.+|++|.+. .++....... ..+.+..++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHcC----C
Confidence 4566889999987643 344444444445677777777654 3443322211 678999999999998886541 1
Q ss_pred CCchHHHHHHHHHHHhCCCchhHHHHh
Q 000874 367 CPEDLNWHSRRVVWYATSNPLVLKVLG 393 (1243)
Q Consensus 367 ~~~~~~~l~~~i~~~~~glPLal~~~g 393 (1243)
. ...+..++..++|.|+....+.
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1226678999999998665443
No 214
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00055 Score=83.86 Aligned_cols=184 Identities=24% Similarity=0.273 Sum_probs=87.7
Q ss_pred cCccceeecccccC-cCcCchhhh-cCCcccEeeccccC-cc--ccCcccccccCCcEEeecCCCCCCc--CCCccCCCC
Q 000874 739 LKSLVKLCLDDCLN-LERFPEILE-EMEHLKRIYLERTA-IT--ELPSSFENLLGLEFLTVSGCSKLDK--LPDNIGNLK 811 (1243)
Q Consensus 739 l~~L~~L~L~~~~~-~~~~p~~l~-~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~~~~~~~--lp~~l~~l~ 811 (1243)
+.+|+.|++++|.. ....-..+. .+++|+.|.+.++. ++ .+-.....+++|+.|++++|..... +.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 45666666666653 222222222 25666666655544 33 2222345566677777777765421 122233344
Q ss_pred CCcEEEccCCCCccCCccccCCCCCcEEEeccCCCCC--CCChhhccCCCCCcEEEeccCCCCCcc--hhhcCCCCCCEE
Q 000874 812 SLDFIAAVGSAISQLPSSVADSNVLRMLFFCRCRRLL--SLPRLLLSGLSSLKFLYISDCAVTEIP--QDIACLSSLTTL 887 (1243)
Q Consensus 812 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L 887 (1243)
+|+.|.+..... +..++.+.+.++.... .+.......++.|+.+.|..|...+.. ..+..++.|. .
T Consensus 322 ~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~ 391 (482)
T KOG1947|consen 322 NLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-E 391 (482)
T ss_pred chhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-h
Confidence 444443332211 3334444444443332 233334556777777777777644322 3334444441 1
Q ss_pred eCcCCCCcccchhccCCCCCCEEeecCCCCCCcCC--C---cCCCCcEEecccCCCCC
Q 000874 888 NLSGNNFESLPASIKQLSQLSSLYLKDCKMLQSLP--E---LPLCLKYLDLRDCNTLR 940 (1243)
Q Consensus 888 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp--~---l~~~L~~L~l~~c~~l~ 940 (1243)
.+ ........+|+.|+++.|.....-- . ....+..+++.+|....
T Consensus 392 ~l--------~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 392 SL--------ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HH--------HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 11 1112222337788888777544322 0 13345666666665544
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.49 E-value=0.0035 Score=69.13 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEEe
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFMS 245 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 245 (1243)
...-+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 34678999999999999999999987765 44456664
No 216
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0017 Score=68.45 Aligned_cols=85 Identities=34% Similarity=0.382 Sum_probs=57.4
Q ss_pred cCCCCCcEEEeccC--CCC-CcchhhcCCCCCCEEeCcCCCCcccch--hccCCCCCCEEeecCCCCCCcCC------Cc
Q 000874 856 SGLSSLKFLYISDC--AVT-EIPQDIACLSSLTTLNLSGNNFESLPA--SIKQLSQLSSLYLKDCKMLQSLP------EL 924 (1243)
Q Consensus 856 ~~l~~L~~L~Ls~~--~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp------~l 924 (1243)
..+++|+.|.++.| +.. .++.....+|+|++|+|++|++..+.. .+..+.+|..|++.+|.....-- .+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34778888888888 433 455556667899999999998774221 45677888888888887655211 35
Q ss_pred CCCCcEEecccCCCCC
Q 000874 925 PLCLKYLDLRDCNTLR 940 (1243)
Q Consensus 925 ~~~L~~L~l~~c~~l~ 940 (1243)
.++|++|+-.++..-+
T Consensus 142 l~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhhhccccccccCCcc
Confidence 5677777665554433
No 217
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.056 Score=57.08 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=98.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
++.+++.++|.-|.|||+++|++....-+.=-.++.+. ........+...+..++.. ..........+.+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHH
Confidence 56679999999999999999955554332212222221 1114555677777777655 2222111111222222
Q ss_pred -----hcCce-EEEEEecCCChh--hhHHHhc--CC-C-CCCCCCeEEEE---eccc---chhcccCCCcceE-EecCCC
Q 000874 288 -----VRRMK-VLIVLDDVNKVG--QLEGLIG--GL-D-QYGPGSRIVVT---TRDK---GVLEKFGVEEEKI-YGVNGL 348 (1243)
Q Consensus 288 -----L~~kr-~LlVLDdv~~~~--~~~~l~~--~~-~-~~~~gsrIIiT---TR~~---~v~~~~~~~~~~~-~~v~~L 348 (1243)
-+++| +.+++||..+.. .++.+.. .+ . ..++-+.+++- -|.+ .+....+-.. .+ |++.++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~-~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI-DIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE-EEEEecCCc
Confidence 25677 999999986543 3443322 11 1 11222223321 1110 0111111111 34 999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCchhHHHHhh
Q 000874 349 EFDEAFELFCNFAFEENHCPEDL-NWHSRRVVWYATSNPLVLKVLGS 394 (1243)
Q Consensus 349 ~~~ea~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~glPLal~~~g~ 394 (1243)
+.++...++.++.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999998888765443333333 34566788888999998887764
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.02 Score=63.31 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
-|.+.|.+|+|||++|++++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998653
No 219
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.031 Score=67.01 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=91.5
Q ss_pred CCcccchhhHHhHHHhhccCC---CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
.+..|.+.-.++|.+.|.-.. .-.-.++.++|++|+|||.|++.++......|-.. -+.-++..++ ++.-.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAE----IRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAE----IRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHH----hccccc
Confidence 467899999999988885421 13457999999999999999999999887776432 2222222211 111111
Q ss_pred HHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh------hHHHhcCCCCCC-------------CCCeE-
Q 000874 263 QMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ------LEGLIGGLDQYG-------------PGSRI- 322 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~-------------~gsrI- 322 (1243)
.... .-...+.+.+++ .+.+.=|++||.+|.... -.+++..++.-. .=|.|
T Consensus 398 TYIG--------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIG--------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc--------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1111 111122222222 355677999999965421 223333322110 12334
Q ss_pred EEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhh
Q 000874 323 VVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 323 IiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
.|||-+. +-....-.+...++++.+-+++|-.++-.+|.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4455432 20111112333899999999999888877765
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.019 Score=65.78 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=85.9
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
.....|.+.|++|+|||+||..++.. ..|+++-.++ .. ..-++.+-.+-.. +.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe--~miG~sEsaKc~~--------------i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PE--DMIGLSESAKCAH--------------IKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hH--HccCccHHHHHHH--------------HHHHHHHh
Confidence 45667889999999999999999864 6787654442 11 1112222111110 00112333
Q ss_pred hcCceEEEEEecCCChhhhHHH------------hcCC---CCCCCCCeEEEEecccchhcccCCCc--ceEEecCCCCH
Q 000874 288 VRRMKVLIVLDDVNKVGQLEGL------------IGGL---DQYGPGSRIVVTTRDKGVLEKFGVEE--EKIYGVNGLEF 350 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~~~~~l------------~~~~---~~~~~gsrIIiTTR~~~v~~~~~~~~--~~~~~v~~L~~ 350 (1243)
-+..=-.||+||++..-+|-.+ +-.+ |..|..--|+-||-...+++.|++.. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3455578999999776654332 2222 22222333555888888988887431 15789999987
Q ss_pred -HHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHh
Q 000874 351 -DEAFELFCNFA-FEENHCPEDLNWHSRRVVWYA 382 (1243)
Q Consensus 351 -~ea~~Lf~~~a-f~~~~~~~~~~~l~~~i~~~~ 382 (1243)
++..+.++..- |. ++..+.++.+...++
T Consensus 675 ~~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 67777776543 32 233334444444444
No 221
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.41 E-value=0.012 Score=75.53 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCcccchhhHHhHHHhhcc------CCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 186 NGLVGLNSRIEQIKPFLCM------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..++|-+..++.+.+.+.. .......++.++|+.|+|||.+|++++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4688999998888777632 11134557899999999999999999887643
No 222
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.40 E-value=0.0024 Score=68.11 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.++|+|..|.||||+++.+......+|..+..+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4679999999999999999998999997666554
No 223
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.37 E-value=0.0076 Score=63.62 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=62.8
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
.+|.|.|+.|.||||+++++...+.......++...-.. + ..... ...+. .......+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~--E--~~~~~-~~~~i---~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI--E--FVHES-KRSLI---NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc--c--ccccC-cccee---eecccCCCccCHHHHHHHHhcC
Confidence 478999999999999999988877655454444321110 0 00000 00010 0111111223344567777877
Q ss_pred ceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccch
Q 000874 291 MKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGV 331 (1243)
Q Consensus 291 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v 331 (1243)
..=.+++|.+.+.+.+....... ..|-.++.|+-...+
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 78899999998887665544331 345556666655444
No 224
>PRK10867 signal recognition particle protein; Provisional
Probab=96.34 E-value=0.026 Score=66.17 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
....+|.++|.+|+||||.|..++..++.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 346899999999999999999888876655
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.0082 Score=65.69 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 445688999999999999999999888432334444
No 226
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.32 E-value=0.079 Score=67.46 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCcccchhhHHhHHHhhccCC---CCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
...+|.+.-.++|.++|.... .....++.++|++|+||||+|+.++......|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 458999999999988776421 13456899999999999999999998765444
No 227
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.30 E-value=0.029 Score=65.77 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999888764
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.14 Score=57.84 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=67.4
Q ss_pred CceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEeccc-chhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCC
Q 000874 290 RMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENH 366 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~ 366 (1243)
+++=++|+|+++... ....++..+..-.+++.+|++|.+. .+........ ..+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHHcCC----
Confidence 344578889998764 3555665555556677777766654 4444332222 6899999999999998865421
Q ss_pred CCchHHHHHHHHHHHhCCCchhHHHHhhhhCCCCHHHHHHHHHHHh
Q 000874 367 CPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLDDLN 412 (1243)
Q Consensus 367 ~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~ 412 (1243)
. .+..++..++|.|+....+. .....+.++..++.+.
T Consensus 182 -~-----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 182 -T-----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQLV 218 (319)
T ss_pred -c-----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHHH
Confidence 1 13567889999999665443 2233344444444443
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.021 Score=70.45 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEH 259 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 259 (1243)
..++|-+..++.+.+.+... .+.........|+.|||||-||++++..+-..=+..+- .++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR-----------~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR-----------IDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee-----------echHH
Confidence 46899998888887766432 22456788889999999999999999865432232222 33333
Q ss_pred HH-HHHHHhhhcccccccCCCccHHHHHhhcCceE-EEEEecCCChh--hhHHHhcCCC
Q 000874 260 LQ-KQMLSTILSEKLEVAGPNIPQFTKERVRRMKV-LIVLDDVNKVG--QLEGLIGGLD 314 (1243)
Q Consensus 260 l~-~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~--~~~~l~~~~~ 314 (1243)
.+ +.-.+.|.+..+..-|-+---.+-+..+.++| +|.||.|+... ...-++..++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 33 34455565555443221112236777788877 77889998654 3555555544
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.05 Score=62.08 Aligned_cols=164 Identities=10% Similarity=0.078 Sum_probs=94.0
Q ss_pred hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc--c-------------------CceEEEeecccccc
Q 000874 194 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--F-------------------EGRCFMSDVRRNSE 252 (1243)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F-------------------~~~~~~~~~~~~~~ 252 (1243)
..+++...+..+ .-....-+.|+.|+||+|+|.+++..+-.. - +...++.. +...
T Consensus 10 ~~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--~~~~ 85 (334)
T PRK07993 10 DYEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP--EKGK 85 (334)
T ss_pred HHHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec--cccc
Confidence 345566666543 345678899999999999999999865321 0 11111110 0000
Q ss_pred CCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh-----cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEE
Q 000874 253 TGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV-----RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVT 325 (1243)
Q Consensus 253 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiT 325 (1243)
..-.++++ ..+.+.+ .+++=++|+|+++... .-..++..+..-.+++.+|++
T Consensus 86 ~~I~idqi---------------------R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (334)
T PRK07993 86 SSLGVDAV---------------------REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLA 144 (334)
T ss_pred ccCCHHHH---------------------HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 00111111 1122222 2556688999998764 345555555544667777777
Q ss_pred ecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHH
Q 000874 326 TRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLK 390 (1243)
Q Consensus 326 TR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~ 390 (1243)
|.+.+ ++....... ..+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|....
T Consensus 145 t~~~~~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 145 CREPARLLATLRSRC-RLHYLAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ECChhhChHHHHhcc-ccccCCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHHH
Confidence 76644 443322111 578999999999998886542 1 11 2236678999999996433
No 231
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0036 Score=60.32 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.25 E-value=0.0069 Score=68.67 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.-+.++|..|+|||+||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998766544556653
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.24 E-value=0.014 Score=60.87 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred chhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH-H-hcccCceEEEeeccccccC-CCChHHHHHHH---
Q 000874 191 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ-F-SSEFEGRCFMSDVRRNSET-GGGLEHLQKQM--- 264 (1243)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~~~-~~~l~~l~~~l--- 264 (1243)
+..+.....+.|. ...+|.+.|++|.|||.||.+.+.+ + ..+|+..++....-+..+. .+-.-++.+++
T Consensus 5 ~~~~Q~~~~~al~-----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALL-----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHH-----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHH-----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 3444455555554 2458999999999999999988764 2 3567777666432211111 00000111111
Q ss_pred ----HHhhhcccccccCCCccHHHH----------HhhcCc---eEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEE
Q 000874 265 ----LSTILSEKLEVAGPNIPQFTK----------ERVRRM---KVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVT 325 (1243)
Q Consensus 265 ----l~~l~~~~~~~~~~~~~~~l~----------~~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiT 325 (1243)
...+..- -+....+.+. ..++++ ..+||+|++.+. .++..++.. .+.|||||++
T Consensus 80 ~~p~~d~l~~~----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 80 LRPIYDALEEL----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp THHHHHHHTTT----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHH----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 1111100 0111111111 123332 579999999665 567777654 5889999998
Q ss_pred eccc
Q 000874 326 TRDK 329 (1243)
Q Consensus 326 TR~~ 329 (1243)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6543
No 234
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.23 E-value=0.0078 Score=59.61 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|.++|.+|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 235
>PRK14974 cell division protein FtsY; Provisional
Probab=96.21 E-value=0.089 Score=59.76 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..++|+++|++|+||||++.+++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999888876554
No 236
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.023 Score=66.34 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=43.0
Q ss_pred CCCCcccchhhHHhHHHhhccCC---------CCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDL---------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
...++=|++..+.++.+++..-. -...|=|.++|++|.|||.||++++++..--|
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 45678899999999888775421 13456788999999999999999999865443
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0054 Score=59.63 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=28.4
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 244 (1243)
.--|+|.||+|+||||+++.+.+.++.. |...-|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 3458999999999999999999988776 6554444
No 238
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.013 Score=63.07 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=28.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHH----hcccCceEEEe
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQF----SSEFEGRCFMS 245 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 245 (1243)
.-|+|-++|++|.|||+|.+++++++ .++|.....+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 45899999999999999999999964 34555555443
No 239
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.15 E-value=0.14 Score=59.83 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
...+|.++|..|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999988766554
No 240
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.13 E-value=0.015 Score=65.93 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=59.9
Q ss_pred HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc-CceEEEeeccccccCCCChHHHHHHHHHhhhccccccc
Q 000874 198 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVA 276 (1243)
Q Consensus 198 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~ 276 (1243)
+.+.+..-. .+ ..++|+|.+|+|||||++.+++.+..+. +..+++..+.+ ....+.++.+.+...+.....+..
T Consensus 123 vID~l~PiG-kG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 123 VVDLVAPIG-KG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhheeecC-CC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCCCC
Confidence 445544322 23 3568999999999999999999876654 33334433333 235677888888776443221111
Q ss_pred CCC------ccHHHHHhh--cCceEEEEEecCCChh
Q 000874 277 GPN------IPQFTKERV--RRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 277 ~~~------~~~~l~~~L--~~kr~LlVLDdv~~~~ 304 (1243)
... ....+.+++ ++++++||+|++....
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 100 011111222 5899999999985543
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.11 E-value=0.029 Score=68.48 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=38.6
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
...+.++|.+..++.+...+... ...-|.|+|.+|+||||+|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34557999999999998876543 23456799999999999999998743
No 242
>PRK06696 uridine kinase; Validated
Probab=96.10 E-value=0.009 Score=64.46 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.6
Q ss_pred chhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 191 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
|...+++|.+.+.........+|+|.|.+|+||||+|+++...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44556666665543222678899999999999999999999987544
No 243
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.13 Score=61.46 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=84.8
Q ss_pred CCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCce----EEEeeccccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGR----CFMSDVRRNS 251 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~----~~~~~~~~~~ 251 (1243)
+++=|.++-..+|+....... -...+-|-.+|++|.|||++|+++++.-+-.|-.+ .|-..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v---- 509 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV---- 509 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc----
Confidence 345557766666665442210 14567788999999999999999999866555322 000000
Q ss_pred cCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh-------------hhHHHhcCCCCCCC
Q 000874 252 ETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG-------------QLEGLIGGLDQYGP 318 (1243)
Q Consensus 252 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~ 318 (1243)
..-+...+++ .++.-+--..+|.||.++... .+..++..++....
T Consensus 510 ---GeSEr~ir~i-------------------F~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 510 ---GESERAIREV-------------------FRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred ---CchHHHHHHH-------------------HHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 0011111111 222222345788888774321 25556666665544
Q ss_pred CCeEEE---Eecccchhcc----cCCCcceEEecCCCCHHHHHHHHHHhhcCCC
Q 000874 319 GSRIVV---TTRDKGVLEK----FGVEEEKIYGVNGLEFDEAFELFCNFAFEEN 365 (1243)
Q Consensus 319 gsrIIi---TTR~~~v~~~----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~ 365 (1243)
...|+| |-|...+-.. -..+ .++.|+.-+.+-..++|..++-+-.
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD--~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLD--RIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccc--eeEeecCccHHHHHHHHHHHHhcCC
Confidence 434443 2333222221 1244 7888888888888999999884433
No 244
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.05 E-value=0.021 Score=73.91 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 186 NGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..++|-+..++.+...+... .+.....+.++|+.|+|||+||+.+++.+-.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 56889998888887776421 1122456778999999999999999987643
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.1 Score=59.45 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=28.2
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.+.++|+++|.+|+||||++.+++..+..+=..+.++
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 3468999999999999999999988765443334444
No 246
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.0029 Score=66.66 Aligned_cols=86 Identities=26% Similarity=0.284 Sum_probs=57.2
Q ss_pred cCCcceEEecccCcccccccccccccCccceeecccc--cCcCcCchhhhcCCcccEeeccccCccccCc--ccccccCC
Q 000874 714 CLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDC--LNLERFPEILEEMEHLKRIYLERTAITELPS--SFENLLGL 789 (1243)
Q Consensus 714 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L 789 (1243)
.+..|+.|++.++..++. ..+-.|++|++|.++.| .....++-....+++|++|++++|.+..+.. .+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 355666666666654443 11334788888888888 6666666666777888888888888775221 14556677
Q ss_pred cEEeecCCCCCC
Q 000874 790 EFLTVSGCSKLD 801 (1243)
Q Consensus 790 ~~L~L~~~~~~~ 801 (1243)
..|++.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 777777776544
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.94 E-value=0.042 Score=59.96 Aligned_cols=173 Identities=20% Similarity=0.206 Sum_probs=91.5
Q ss_pred CCCCcccchhhHHhHHHhhccCC-CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC-CCChHHHH
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET-GGGLEHLQ 261 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l~ 261 (1243)
+...++|..++..++..++.... .++..-|.|+|+.|.|||+|......+ .+.+.-...+......... .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 44579999999999988885421 133445779999999999987766655 2333333333222211110 02344555
Q ss_pred HHHHHhhhcccccc-cCCCccHHHHHhhcC------ceEEEEEecCCChh----h--hHHHhcCCC-CCCCCCeEEEEec
Q 000874 262 KQMLSTILSEKLEV-AGPNIPQFTKERVRR------MKVLIVLDDVNKVG----Q--LEGLIGGLD-QYGPGSRIVVTTR 327 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~-~~~~~~~~l~~~L~~------kr~LlVLDdv~~~~----~--~~~l~~~~~-~~~~gsrIIiTTR 327 (1243)
.++..++....... .-.+...++-+.|+. -++.+|+|.+|--. | +..+...-. ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55555543322111 222223444444432 36999999876432 2 233322211 2356777889998
Q ss_pred ccc-------hhcccCCCcceEEecCCCCHHHHHHHHHH
Q 000874 328 DKG-------VLEKFGVEEEKIYGVNGLEFDEAFELFCN 359 (1243)
Q Consensus 328 ~~~-------v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~ 359 (1243)
-.- |-....-. .++-.+.++-++-.++++.
T Consensus 181 ld~lE~LEKRVKSRFshr--~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHR--VIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred ccHHHHHHHHHHhhcccc--eeeccCCCChHHHHHHHHH
Confidence 532 22222221 3555555555555555544
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.94 E-value=0.029 Score=70.79 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCcccchhhHHhHHHhhccC------CCCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 186 NGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..++|-+..++.|...+... .+.....+.++|+.|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999998888877531 112345789999999999999999988763
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.91 E-value=0.0067 Score=68.44 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=41.3
Q ss_pred CcccchhhHHhHHHhhccCC---CCCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 187 GLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.++|.++.++++.+++.... ....++++++|++|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999998886532 23568899999999999999999998654
No 250
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.79 E-value=0.015 Score=59.02 Aligned_cols=138 Identities=14% Similarity=0.231 Sum_probs=70.3
Q ss_pred cchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc--------------------cCceEEEeeccc
Q 000874 190 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--------------------FEGRCFMSDVRR 249 (1243)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~~~~~~~~ 249 (1243)
|-+..++.+.+.+..+ .-...+.++|..|+||+|+|.++++.+-.. .....++.....
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 3445566677777653 234467899999999999999999864221 222233311000
Q ss_pred cccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEec
Q 000874 250 NSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTR 327 (1243)
Q Consensus 250 ~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR 327 (1243)
... ..++++. .+...+... ...+++=++|+||++... ...+|+..+......+++|++|+
T Consensus 79 -~~~-i~i~~ir-~i~~~~~~~---------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 79 -KKS-IKIDQIR-EIIEFLSLS---------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp -SSS-BSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred -cch-hhHHHHH-HHHHHHHHH---------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 000 2222222 222221111 012345688999998753 35556555554567889999888
Q ss_pred ccc-hhcccCCCcceEEecCCC
Q 000874 328 DKG-VLEKFGVEEEKIYGVNGL 348 (1243)
Q Consensus 328 ~~~-v~~~~~~~~~~~~~v~~L 348 (1243)
+.. +........ ..+.+.++
T Consensus 141 ~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTS-EEEEE---
T ss_pred ChHHChHHHHhhc-eEEecCCC
Confidence 765 222221111 45665554
No 251
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.76 E-value=0.026 Score=63.50 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
..+-+.++|..|+|||.||.++++.+..+-..+.|+. +..+...+....... ...+ ..+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-------~~~~-~l~~l 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-------SVKE-KIDAV 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-------cHHH-HHHHh
Confidence 3456889999999999999999998765544445553 123333333322211 1112 22223
Q ss_pred cCceEEEEEecCCCh--hhhH--HHhcCC-CCC-CCCCeEEEEec
Q 000874 289 RRMKVLIVLDDVNKV--GQLE--GLIGGL-DQY-GPGSRIVVTTR 327 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~--~~~~--~l~~~~-~~~-~~gsrIIiTTR 327 (1243)
. +-=||||||+... ..|. .++..+ ... ..+-.+|+||-
T Consensus 216 ~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 216 K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 3 3458999999533 3343 243332 211 23456777775
No 252
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.26 Score=56.15 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=59.1
Q ss_pred CceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEecc-cchhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCC
Q 000874 290 RMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENH 366 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~ 366 (1243)
+++=++|+|+++... ....++..+..-.+++.+|++|.+ ..++....... ..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHcC----C
Confidence 345578889998764 366666666555677776666655 44443332211 689999999999999887652 1
Q ss_pred CCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 367 CPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 367 ~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
.+ ...++..++|.|+....+
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999754433
No 253
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.66 E-value=0.063 Score=59.49 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.+.++|+++|++|+||||++..++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999988776553334444
No 254
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.66 E-value=0.069 Score=66.94 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=71.4
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
+-|.++|++|.||||+|+.++.+....|- .+.. .++....... ....+...+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is~-----------~~~~~~~~g~--------~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TISG-----------SDFVEMFVGV--------GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEeh-----------HHhHHhhhcc--------cHHHHHHHHHHHHhc
Confidence 34889999999999999999987654431 1110 0111100000 000011112222334
Q ss_pred ceEEEEEecCCChh----------------hhHHHhcCCCCCC--CCCeEEEEecccchhccc-----CCCcceEEecCC
Q 000874 291 MKVLIVLDDVNKVG----------------QLEGLIGGLDQYG--PGSRIVVTTRDKGVLEKF-----GVEEEKIYGVNG 347 (1243)
Q Consensus 291 kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~ 347 (1243)
.+.+|++|+++... .+..++..+..+. .+.-+|.||...+..... ..+ ..+.++.
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfd--r~i~v~~ 321 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFD--RQVVVGL 321 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccc--eEEEcCC
Confidence 67899999986541 1233333333222 344455577665543321 234 6788999
Q ss_pred CCHHHHHHHHHHhhcC
Q 000874 348 LEFDEAFELFCNFAFE 363 (1243)
Q Consensus 348 L~~~ea~~Lf~~~af~ 363 (1243)
.+.++..+++..+.-+
T Consensus 322 Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 322 PDVRGREQILKVHMRR 337 (644)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999998887643
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.017 Score=58.70 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
++.|+|.+|.||||+|+.+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999997766545566664
No 256
>PRK07667 uridine kinase; Provisional
Probab=95.60 E-value=0.022 Score=59.92 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=31.9
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
.+++...+..-. .+..+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555554433 556899999999999999999999977654
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=95.59 E-value=0.092 Score=66.41 Aligned_cols=150 Identities=11% Similarity=0.139 Sum_probs=87.1
Q ss_pred cCCchhHHHHHHHHHHHhc-ccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEE
Q 000874 218 MGGIGKTTLATAIFNQFSS-EFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIV 296 (1243)
Q Consensus 218 ~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlV 296 (1243)
+.|+||||+|.++++++-. .+.....--+. ++. .++..+++.+-........ -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~-rgid~IR~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA---SDE-RGINVIREKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCc-ccHHHHHHHHHHHHhcCCc--------------CCCCCEEEE
Confidence 7899999999999997632 23222222121 121 3555444333211111000 012457999
Q ss_pred EecCCChh--hhHHHhcCCCCCCCCCeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHH
Q 000874 297 LDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNW 373 (1243)
Q Consensus 297 LDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~ 373 (1243)
||+++... +...|...+......+++|++|.+.. +....... ...+.+.+++.++-.+.+.+.+-..... -..+
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR-C~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh-ceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 99998764 45566655554455677777666543 32222211 2789999999999888777665322211 1134
Q ss_pred HHHHHHHHhCCCchh
Q 000874 374 HSRRVVWYATSNPLV 388 (1243)
Q Consensus 374 l~~~i~~~~~glPLa 388 (1243)
....|++.++|-+..
T Consensus 713 ~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 713 GLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHcCCCHHH
Confidence 678899999998753
No 258
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.0011 Score=81.08 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=18.3
Q ss_pred CCcceEEecccCccccc--ccccccccCccceeeccc
Q 000874 715 LTDLVELDLRDCKRLKR--ISTRFCKLKSLVKLCLDD 749 (1243)
Q Consensus 715 l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~L~~ 749 (1243)
++.|+.|.+.+|..... +-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666665554443 222234455666666655
No 259
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.085 Score=65.33 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
.-+.++||+.+++++...|+... .+-+ .++|-+|+|||++|.-++.++..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-KNNP--vLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-KNNP--VLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-CCCC--eEecCCCCCHHHHHHHHHHHHhc
Confidence 34569999999999999998754 2222 35799999999999999987654
No 260
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.001 Score=69.80 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=46.0
Q ss_pred ccCCCCCcEEEeccCCCCCcchhhcCCCCCCEEeCcCCCCcccch--hccCCCCCCEEeecCCCCCCcCC
Q 000874 855 LSGLSSLKFLYISDCAVTEIPQDIACLSSLTTLNLSGNNFESLPA--SIKQLSQLSSLYLKDCKMLQSLP 922 (1243)
Q Consensus 855 ~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp 922 (1243)
...++.|+.|.||-|.++.+.. +..|++|++|.|..|.|.++.+ .+.++|+|+.|.|..|+-.+.-+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 3456777777777777776643 5667777777777777776654 45777777777777776554443
No 261
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.077 Score=63.05 Aligned_cols=187 Identities=14% Similarity=0.158 Sum_probs=101.4
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
...+++||-+.-...|...+..+. -..--...|+-|+||||+||-++..+-..=. ....+.+--..-+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----------~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENG----------PTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCC----------CCCCcchhhhhhH
Confidence 445678999999999999887643 2334567899999999999999885321100 0000011111111
Q ss_pred HHHHhhhccccccc-----CCCccHHHHHhh-----cCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEecccc
Q 000874 263 QMLSTILSEKLEVA-----GPNIPQFTKERV-----RRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTRDKG 330 (1243)
Q Consensus 263 ~ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~ 330 (1243)
.+...-..+-..+| +.+-.+.+.+.. +++.=+.|+|.|.-. ..|..++..+..-.+.-..|..|++.+
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 11111000000011 111112233332 345568899999655 458888777665555666666666554
Q ss_pred -hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 000874 331 -VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATS 384 (1243)
Q Consensus 331 -v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~g 384 (1243)
+.... ......|..+.++.++-...+...+-...... ..+...-|++..+|
T Consensus 161 Kip~TI-lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~G 212 (515)
T COG2812 161 KIPNTI-LSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEG 212 (515)
T ss_pred cCchhh-hhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCC
Confidence 33222 11126799999999988887777664332222 22334445555555
No 262
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.40 E-value=0.072 Score=55.84 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=95.3
Q ss_pred CCCcccchhhHHh---HHHhhccCC---CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChH
Q 000874 185 SNGLVGLNSRIEQ---IKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLE 258 (1243)
Q Consensus 185 ~~~~vGr~~~~~~---l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 258 (1243)
.++.||-+....+ |.+.|.... +-..+-|..+|++|.|||.+|++++++.+.-| +. +
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-v----------- 182 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-V----------- 182 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-e-----------
Confidence 3567787765443 455554421 14578899999999999999999999755332 11 0
Q ss_pred HHHHHHHHh-hhcccccccCCCccHHHHH-hhcCceEEEEEecCCChh--------------hhHHHhcCCCCC--CCCC
Q 000874 259 HLQKQMLST-ILSEKLEVAGPNIPQFTKE-RVRRMKVLIVLDDVNKVG--------------QLEGLIGGLDQY--GPGS 320 (1243)
Q Consensus 259 ~l~~~ll~~-l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~gs 320 (1243)
.. .+++.+ .+ ++......+-+ .-+.-++.+.+|.++-.. ...+++..++.. +.|-
T Consensus 183 ka-t~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 183 KA-TELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ch-HHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 00 111111 11 11111112222 223457999999875321 244555554433 3566
Q ss_pred eEEEEecccchhccc-CCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000874 321 RIVVTTRDKGVLEKF-GVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSN 385 (1243)
Q Consensus 321 rIIiTTR~~~v~~~~-~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~gl 385 (1243)
..|-.|....++... ...=...++..-.+++|..+++..++-.-.-+-+. -.+.++++.+|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 666666666554331 11111567777788999999998887332222111 134555566554
No 263
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.32 E-value=1.4 Score=50.89 Aligned_cols=102 Identities=10% Similarity=-0.016 Sum_probs=63.2
Q ss_pred eEEEEEecCCCh-----------hhhHHHhcCCCCCCCCCeEEEEecccchhcc----cCCCcceEEecCCCCHHHHHHH
Q 000874 292 KVLIVLDDVNKV-----------GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEK----FGVEEEKIYGVNGLEFDEAFEL 356 (1243)
Q Consensus 292 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~----~~~~~~~~~~v~~L~~~ea~~L 356 (1243)
|=+||+|+.... .+|...+.. .+-.+||++|-+...... +.-...+.+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998432 124443322 355689998887654432 3222236789999999999999
Q ss_pred HHHhhcCCCCC------------C------chHHHHHHHHHHHhCCCchhHHHHhhhhC
Q 000874 357 FCNFAFEENHC------------P------EDLNWHSRRVVWYATSNPLVLKVLGSSLC 397 (1243)
Q Consensus 357 f~~~af~~~~~------------~------~~~~~l~~~i~~~~~glPLal~~~g~~L~ 397 (1243)
...+.-..... . .....-....+...||==.=|..+++.++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99887432110 0 11233345566777777667777777665
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.02 Score=59.32 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=32.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
....+|.+.|+.|+||||+|++++.++..++...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34568999999999999999999999988887777763
No 265
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.30 E-value=0.077 Score=55.84 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=58.0
Q ss_pred hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccc
Q 000874 194 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKL 273 (1243)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~ 273 (1243)
+.+.+...+.. +-+++.|.|.+|.||||+++.+...+...=..++++. .. ......+....+....
T Consensus 6 Q~~a~~~~l~~----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT----~~Aa~~L~~~~~~~a~ 71 (196)
T PF13604_consen 6 QREAVRAILTS----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PT----NKAAKELREKTGIEAQ 71 (196)
T ss_dssp HHHHHHHHHHC----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SS----HHHHHHHHHHHTS-EE
T ss_pred HHHHHHHHHhc----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------Cc----HHHHHHHHHhhCcchh
Confidence 34445555543 3467888999999999999999887666522333332 11 1222222222221111
Q ss_pred cccCCCccHHHHHhh---------cCceEEEEEecCCChh--hhHHHhcCCCCCCCCCeEEEEecccch
Q 000874 274 EVAGPNIPQFTKERV---------RRMKVLIVLDDVNKVG--QLEGLIGGLDQYGPGSRIVVTTRDKGV 331 (1243)
Q Consensus 274 ~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~~v 331 (1243)
.+ ...+...- ..++-+||+|++.-.. ++..+..... ..|+|+|+.--..++
T Consensus 72 Ti-----~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 72 TI-----HSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EH-----HHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred hH-----HHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 10 00000000 1234599999986553 4666665543 257788887654443
No 266
>PRK04296 thymidine kinase; Provisional
Probab=95.29 E-value=0.029 Score=58.76 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=58.8
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc--c-cCCCccHHHHHh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE--V-AGPNIPQFTKER 287 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~-~~~~~~~~l~~~ 287 (1243)
.++.|+|..|.||||+|..++.+...+-..+.++... .... .+.. .++++++..... . ...++...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~-~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDR-YGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccc-ccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4778999999999999999998876654444444210 0001 1111 122223211100 0 11111122233
Q ss_pred hcCceEEEEEecCCCh--hhhHHHhcCCCCCCCCCeEEEEecccch
Q 000874 288 VRRMKVLIVLDDVNKV--GQLEGLIGGLDQYGPGSRIVVTTRDKGV 331 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v 331 (1243)
..++.-+||+|.+.-. +++.++...+ ...|..||+|.++...
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 2234568999998543 3344443332 2467889999987543
No 267
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=95.24 E-value=0.022 Score=57.21 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=55.4
Q ss_pred cEEEcccccccc-CchHHHHHHHHhhcC-CceeeecCccccC--CCcchHHHHHHhhhcceeEEeeccCc
Q 000874 10 DVFLSFRGVDTR-ASFTCHLYDSLFERK-KIRTFIDDEELRQ--GDAISPVLLNAIQGSKISLIIFSKDY 75 (1243)
Q Consensus 10 dvF~sf~g~d~r-~~f~~~L~~~L~~~~-gi~~f~d~~~~~~--g~~~~~~l~~ai~~s~~~i~v~s~~y 75 (1243)
-|||||+.+.-- ...+-.|.+.| ++. |+.|.+|-++... +..+...+.++++++...|+|.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L-~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFL-RQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHH-HhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 399999985533 36788999999 888 9999999988854 77899999999999999999999543
No 268
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.14 Score=53.58 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=39.1
Q ss_pred CcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeecc
Q 000874 187 GLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVR 248 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 248 (1243)
+.=|-..+++++.+..... .-+..+=|.++|++|.|||-+|++|+|+. ..||+.+++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvig 244 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIG 244 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehh
Confidence 4556666777766544221 01445668899999999999999999973 456775443
No 269
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.13 Score=59.08 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhccc--CceEEE
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFM 244 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~ 244 (1243)
..++++++|+.|+||||++.+++.+...++ ..+.++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457999999999999999999998765444 344454
No 270
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.059 Score=64.36 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=43.1
Q ss_pred CCcccchhhHHhHHHhhccCC---CCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
++-.|+++-.++|.+.+.-.. +-+-+++..+|++|||||.+|+.++..+-..|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 457899988888888875431 25678999999999999999999999776665
No 271
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.14 E-value=0.017 Score=56.18 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.5
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|+|.|+.|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 272
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.14 Score=59.08 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=79.9
Q ss_pred CcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc---------------------CceEEEe
Q 000874 187 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGRCFMS 245 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~ 245 (1243)
.++|-+....++..+..... .....+-++|+.|+||||+|.++++.+-... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 35677777788887776433 2344589999999999999999999765332 1122221
Q ss_pred eccccccCCCC---hHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCCC
Q 000874 246 DVRRNSETGGG---LEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGS 320 (1243)
Q Consensus 246 ~~~~~~~~~~~---l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs 320 (1243)
. +.. .. ..+..+++........ ..++.-++|+|+++.... -..+..........+
T Consensus 81 ~----s~~-~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 P----SDL-RKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred c----ccc-CCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 0 111 11 1222222222211100 035677899999987643 444554444456778
Q ss_pred eEEEEeccc-chhcccCCCcceEEecCCCCHHH
Q 000874 321 RIVVTTRDK-GVLEKFGVEEEKIYGVNGLEFDE 352 (1243)
Q Consensus 321 rIIiTTR~~-~v~~~~~~~~~~~~~v~~L~~~e 352 (1243)
++|++|.+. .+....... ...+++.+.+..+
T Consensus 141 ~~il~~n~~~~il~tI~SR-c~~i~f~~~~~~~ 172 (325)
T COG0470 141 RFILITNDPSKILPTIRSR-CQRIRFKPPSRLE 172 (325)
T ss_pred EEEEEcCChhhccchhhhc-ceeeecCCchHHH
Confidence 888888733 333322211 1456666633333
No 273
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.10 E-value=0.032 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=29.9
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..+|-|.|.+|.||||||+++..++...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999888776666664
No 274
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.09 E-value=0.42 Score=57.55 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=99.5
Q ss_pred CCCCcccchhhHHhHHHhhccC--CCCCeEEEEEEecCCchhHHHHHHHHHHHh--------cccCceEEEeeccccccC
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFS--------SEFEGRCFMSDVRRNSET 253 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~~~~ 253 (1243)
++..+=+|+.+..+|...+..- .....+.+-|.|.+|.|||..+..|.+.++ ..|+++ .+...+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv-eINgm~----- 467 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYV-EINGLR----- 467 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEE-EEccee-----
Confidence 5667889999999998887542 113445889999999999999999998543 124432 222111
Q ss_pred CCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc-----CceEEEEEecCCChhh--hHHHhcCCCCC-CCCCeEEEE
Q 000874 254 GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR-----RMKVLIVLDDVNKVGQ--LEGLIGGLDQY-GPGSRIVVT 325 (1243)
Q Consensus 254 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIIiT 325 (1243)
.....++...|..++.+....+. ...+.+..+.. .+.+++++|+++..-. -+-+-..+.|. .++|+++|-
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 15567888888888776654431 22233444443 4568999999865432 11122234454 478887765
Q ss_pred eccc-----------chhcccCCCcceEEecCCCCHHHHHHHHHHhh
Q 000874 326 TRDK-----------GVLEKFGVEEEKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 326 TR~~-----------~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
+=.. .+...+|. ..+...+-+.++-.++...+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhh
Confidence 4211 12222333 345555566666555555443
No 275
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.08 E-value=0.082 Score=55.45 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+++|.++|+.|+||||.+.+++.+.+.+-..+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999988888887665534445553
No 276
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.11 Score=58.96 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=47.0
Q ss_pred ceEEEEEecCCChhh--hHHHhcCCCCCCCCCeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCC
Q 000874 291 MKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHC 367 (1243)
Q Consensus 291 kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~ 367 (1243)
.|++ |+|+++..+. -..+...+.....+..+|++|.+.. +....... ...+.+.+++.+++.+.+.... .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR-c~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR-CRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH-hhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 3444 5688865432 2333322222234566777777654 33322111 1678999999999998886542 1
Q ss_pred CchHHHHHHHHHHHhCCCchh
Q 000874 368 PEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 368 ~~~~~~l~~~i~~~~~glPLa 388 (1243)
.... ..+..++|-|+.
T Consensus 187 ~~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEPE-----ERLAFHSGAPLF 202 (325)
T ss_pred CcHH-----HHHHHhCCChhh
Confidence 1111 123567888864
No 277
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.06 E-value=0.072 Score=57.64 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=37.3
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..|.++|..+- ..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555554333 45679999999999999999999887766667788885
No 278
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.06 E-value=0.019 Score=60.44 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=23.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
||||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987644
No 279
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.05 E-value=0.042 Score=63.40 Aligned_cols=107 Identities=13% Similarity=0.196 Sum_probs=62.4
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
...|.|.|+.|.||||+++++...+.......++... . .++.........+.......+.....+.++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--d------p~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--D------PIEYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--C------ChhhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 4689999999999999999999877655555554421 0 0110000000000011111122334466888888
Q ss_pred CceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEec
Q 000874 290 RMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTR 327 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR 327 (1243)
...=.|++|.+.+.+.+...... ...|-.|+.|.-
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~H 228 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLH 228 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEc
Confidence 89999999999988776654332 133444554443
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.05 E-value=0.091 Score=60.79 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=36.8
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+.++.+.|..+- ..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345556665433 34579999999999999999999987766555666764
No 281
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.02 E-value=0.14 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 45688999999999999999975
No 282
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.01 E-value=0.14 Score=51.29 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=59.9
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhh----cccccccCCC-------
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTIL----SEKLEVAGPN------- 279 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~----~~~~~~~~~~------- 279 (1243)
.+|-|++-.|.||||+|-..+-+...+=-.+.++.=+... .. .+-....+.+ ..+. +........+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WK-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-Cc-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999999888765553334443211111 11 2222333322 0000 0000000000
Q ss_pred ---ccHHHHHhhcC-ceEEEEEecCCCh-----hhhHHHhcCCCCCCCCCeEEEEecccc
Q 000874 280 ---IPQFTKERVRR-MKVLIVLDDVNKV-----GQLEGLIGGLDQYGPGSRIVVTTRDKG 330 (1243)
Q Consensus 280 ---~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIIiTTR~~~ 330 (1243)
..+..++.+.. +-=|+|||++-.. ...+.+...+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344433 4459999998443 223444444444456778999999864
No 283
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.095 Score=58.27 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHHHhhccccCCCCCCCcccchhhHHhHHHhhccC---------CCCCeEEEEEEecCCchhHHHHH
Q 000874 158 RHDAQLVNKIVEDILKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAT 228 (1243)
Q Consensus 158 ~~e~~~i~~i~~~i~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGiGKTtLA~ 228 (1243)
.+++.+++.+-.+|..+ .+-..=+.+.|.+...+-|++..... --..=+-|..+|++|.|||-||+
T Consensus 189 ~~d~~Lve~lerdIl~~-----np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAK 263 (491)
T KOG0738|consen 189 GYDADLVEALERDILQR-----NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAK 263 (491)
T ss_pred cchHHHHHHHHHHHhcc-----CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHH
Confidence 45666666666666554 33344467888888777776654321 00223568899999999999999
Q ss_pred HHHHHHhcc
Q 000874 229 AIFNQFSSE 237 (1243)
Q Consensus 229 ~v~~~~~~~ 237 (1243)
+||.+-...
T Consensus 264 AvATEc~tT 272 (491)
T KOG0738|consen 264 AVATECGTT 272 (491)
T ss_pred HHHHhhcCe
Confidence 999875533
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.00 E-value=0.23 Score=58.70 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=27.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh--cccCceEEEe
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFMS 245 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 245 (1243)
.+++.++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999998887665 3333455553
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.76 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.+++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 286
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.027 Score=58.74 Aligned_cols=30 Identities=43% Similarity=0.605 Sum_probs=27.2
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
+.+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988766
No 287
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.90 E-value=0.18 Score=64.18 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
...++|....++.+.+.+..-. ..-.-|.|+|..|+|||++|+++++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4579999999888876665432 233467899999999999999998853
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.89 E-value=0.1 Score=56.19 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+..|..+|..+- ..-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344556664332 45689999999999999999999987765555667774
No 289
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.53 Score=49.36 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..+.+=|.+.+++++.+.+...- -...+=|..+|++|.|||-+|++.+.+....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 34556677777777766553211 0234567899999999999999988764433
No 290
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.87 E-value=0.11 Score=58.96 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=25.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
...+|+++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 56899999999999999999999877654
No 291
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.86 E-value=0.17 Score=56.09 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
+++..|.+.|.+|.|||.||-+..-
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHHH
Confidence 6799999999999999998876543
No 292
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.85 E-value=0.26 Score=60.90 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
....++|....++++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 45689999999999888775433 23345679999999999999999885
No 293
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.74 E-value=0.086 Score=56.32 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..-+++-|+|.+|+|||++|..++.....+-..++|++
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45689999999999999999999887766667788886
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.28 Score=58.25 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=24.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..++|+|+|.+|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999998866544
No 295
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.69 E-value=0.02 Score=54.20 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEecCCchhHHHHHHHHHHHhcccCc
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFSSEFEG 240 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 240 (1243)
|-|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 296
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.69 E-value=0.38 Score=55.06 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
+.++|....+.++.+.+..-. ..-.-|.|+|-.|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 468999999988887775543 2334577999999999999999986
No 297
>PTZ00301 uridine kinase; Provisional
Probab=94.68 E-value=0.028 Score=59.54 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=25.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
..+|||.|.+|+||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998876544
No 298
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.67 E-value=0.076 Score=51.56 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=20.1
Q ss_pred hhcCCcccEeeccccCccccCcc-cccccCCcEEeecCCCCCCcCCCccCCCCCCcEEEccC
Q 000874 760 LEEMEHLKRIYLERTAITELPSS-FENLLGLEFLTVSGCSKLDKLPDNIGNLKSLDFIAAVG 820 (1243)
Q Consensus 760 l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 820 (1243)
+..+++|+.+.+.++ +..++.. +.++++|+.+.+.+ .....-...+..+++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 333334444444332 3333322 34444455555533 11111122344455555555443
No 299
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0036 Score=65.84 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=71.1
Q ss_pred CCccceEEEecCCcccchhhhhccCCceecCCCCCCCCCCceEEEecCCCCCCCCCCCcccccceecccccccccccc--
Q 000874 554 MSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLPSNFKPKNIVELSLRFSKVEQIWE-- 631 (1243)
Q Consensus 554 l~~Lr~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-- 631 (1243)
+.+.+.|++.++.+... .+.. . .+.|.+|.++-|.|++|.+.-.+++|++|.|+.|.|..+-+
T Consensus 18 l~~vkKLNcwg~~L~DI-----------sic~---k-Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----------SICE---K-MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccHH-----------HHHH---h-cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH
Confidence 44566777777765432 1111 1 25788999999999999888889999999999999987743
Q ss_pred cccccccccccccCCCcccccCCC------CCCCCCccEEe
Q 000874 632 GKKKAFKLKSIDLSHSEHLIRIPD------LSEIPNLERIY 666 (1243)
Q Consensus 632 ~~~~l~~L~~L~L~~~~~~~~~~~------l~~l~~L~~L~ 666 (1243)
-++++++|++|.|..|.-...-+. +.-+|||+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 457888888888888876555442 55677777775
No 300
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.66 E-value=0.15 Score=61.50 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=43.0
Q ss_pred CCCcccchhhHHhHHHhhccCC--CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..+++--..-++++..||.... ....+++.+.|++|+||||.++.+++.. .|+..-|..
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3445555667788888886521 1346799999999999999999999875 356666654
No 301
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.65 E-value=0.1 Score=51.83 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=26.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.-.+++|.|..|.|||||++.+..... ...+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTW 59 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEE
Confidence 346899999999999999999987543 23455554
No 302
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.36 Score=59.55 Aligned_cols=179 Identities=14% Similarity=0.155 Sum_probs=103.7
Q ss_pred CCCCCcccchhhHHhHHHhh---ccCC------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC
Q 000874 183 DSSNGLVGLNSRIEQIKPFL---CMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET 253 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L---~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 253 (1243)
....++.|.++..++|++.. .... ..-++=|-++|++|.|||-||++++-+.. +=|+......
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSE--- 379 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSE--- 379 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechHH---
Confidence 45678899887766665544 3221 13356688999999999999999998633 2233221111
Q ss_pred CCChHHHHHHHHHhhhcccccccCCCc-cHHHHHhhcCceEEEEEecCCCh-----------------hhhHHHhcCCCC
Q 000874 254 GGGLEHLQKQMLSTILSEKLEVAGPNI-PQFTKERVRRMKVLIVLDDVNKV-----------------GQLEGLIGGLDQ 315 (1243)
Q Consensus 254 ~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~ 315 (1243)
+++.+.+ .+... .+.....-...++.|.+|+++.. ..+.+++...+.
T Consensus 380 ----------FvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 380 ----------FVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ----------HHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 0100000 00011 01122222345677777776321 126677776666
Q ss_pred CCCCCeEE--EEecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchh
Q 000874 316 YGPGSRIV--VTTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLV 388 (1243)
Q Consensus 316 ~~~gsrII--iTTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLa 388 (1243)
+..++.|| -+|+..+++.. -..+ ..+.++.-+.....++|..|+-+.... .+..++++ ++...-|.+=|
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfd--r~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFD--RQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccc--cceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 65444333 35555554433 2244 678899999999999999998544332 45556666 88888888755
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.53 E-value=0.079 Score=56.93 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=69.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC-CCChHHHHHHHHHhhhccc-------ccccCCCc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET-GGGLEHLQKQMLSTILSEK-------LEVAGPNI 280 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l~~~ll~~l~~~~-------~~~~~~~~ 280 (1243)
.-.++||+|-.|.||||+|+.+..-.... .+.+++..-. ...- .....+...+++...+... .+.++.+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45689999999999999999998744433 3444443110 0000 0222333444444433211 12244444
Q ss_pred c-HHHHHhhcCceEEEEEecCCCh------hhhHHHhcCCCCCCCCCeEEEEecccchhccc
Q 000874 281 P-QFTKERVRRMKVLIVLDDVNKV------GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKF 335 (1243)
Q Consensus 281 ~-~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 335 (1243)
+ -.+.+.|.-+.-++|.|.--.. .|.-.++..+. ...|-..+..|-|-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 3 4567778889999999975332 33333333322 12355667777777766665
No 304
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.095 Score=64.13 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=76.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
...+.+-++|++|.|||.||+++++.....|-.+..- .+....+ ......+.+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--------------~l~sk~v--------Gesek~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--------------ELLSKWV--------GESEKNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--------------HHhcccc--------chHHHHHHHHHHHH
Confidence 3456889999999999999999999665554322111 1100000 00011111223333
Q ss_pred hcCceEEEEEecCCChh-------------hhHHHhcCCCCCCC--CCeEEEEecccchhccc-----CCCcceEEecCC
Q 000874 288 VRRMKVLIVLDDVNKVG-------------QLEGLIGGLDQYGP--GSRIVVTTRDKGVLEKF-----GVEEEKIYGVNG 347 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~--gsrIIiTTR~~~v~~~~-----~~~~~~~~~v~~ 347 (1243)
.+..+..|.+|.++... ....++..+..... +..||-||-........ ..+ ..+.++.
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd--~~i~v~~ 409 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFD--RLIYVPL 409 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccc--eEeecCC
Confidence 45678999999985432 13333333332233 33345555544433321 234 7899999
Q ss_pred CCHHHHHHHHHHhhcC
Q 000874 348 LEFDEAFELFCNFAFE 363 (1243)
Q Consensus 348 L~~~ea~~Lf~~~af~ 363 (1243)
.+.++..+.|..+.-+
T Consensus 410 pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 410 PDLEERLEIFKIHLRD 425 (494)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999998753
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.45 E-value=0.11 Score=56.65 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=34.7
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..+.++|..+- ..-.++.|+|.+|+||||+|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 44555554433 55678999999999999999999765433445666764
No 306
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.19 Score=59.12 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=77.0
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVR 289 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 289 (1243)
..=|.+||++|.|||-||++|+|+-.-.| +.. .+. ++......+ ....+.+..++.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV--------KGP-ELlNkYVGE--------SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV--------KGP-ELLNKYVGE--------SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eee--------cCH-HHHHHHhhh--------HHHHHHHHHHHhhc
Confidence 34478999999999999999999866555 321 111 222222111 01111122222234
Q ss_pred CceEEEEEecCCChh-------------hhHHHhcCCCCC--CCCCeEEEEecccchhcc-----cCCCcceEEecCCCC
Q 000874 290 RMKVLIVLDDVNKVG-------------QLEGLIGGLDQY--GPGSRIVVTTRDKGVLEK-----FGVEEEKIYGVNGLE 349 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~v~~L~ 349 (1243)
.-+++|.+|.++... ....|+..++.. ..|--||-.|..+++... -..+ .+.-|+..+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlD--k~LyV~lPn 680 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLD--KLLYVGLPN 680 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccC--ceeeecCCC
Confidence 568999999985432 144555555543 245556666655544322 2244 678889999
Q ss_pred HHHHHHHHHHhhc
Q 000874 350 FDEAFELFCNFAF 362 (1243)
Q Consensus 350 ~~ea~~Lf~~~af 362 (1243)
.+|-.+++...+-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988874
No 307
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.44 E-value=0.042 Score=65.26 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=41.6
Q ss_pred CCCcccchhhHHhHHHhhcc---CCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 185 SNGLVGLNSRIEQIKPFLCM---DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..+++|++..+++|.+.|.. +-...-+++.++|++|+||||||+.+.+.+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 34689999999999988822 11245689999999999999999999985543
No 308
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.44 E-value=0.034 Score=59.38 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999876
No 309
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.44 E-value=0.081 Score=54.11 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEee---ccccccCCCChH--HHHHHHHHhhhcccccccCCC-ccH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSD---VRRNSETGGGLE--HLQKQMLSTILSEKLEVAGPN-IPQ 282 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~l~--~l~~~ll~~l~~~~~~~~~~~-~~~ 282 (1243)
.-.+++|.|..|.|||||++.+...... ..+.+++.. +....+. ..+. .+.+.+... .....++.+ ..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~-~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQR-PYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCC-CccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 3458999999999999999999875432 233333321 1111111 1111 222222110 111112211 122
Q ss_pred HHHHhhcCceEEEEEecCCCh------hhhHHHhcCCCCCCCCCeEEEEecccchhcccCCCcceEEec
Q 000874 283 FTKERVRRMKVLIVLDDVNKV------GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGVEEEKIYGV 345 (1243)
Q Consensus 283 ~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v 345 (1243)
.+...+-.++=++++|+--.. ..+..+...+ +..||++|.+...... .+ +++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~~--~d--~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWKF--HD--RVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHhh--CC--EEEEE
Confidence 344555667778899975322 2233333222 3568888888765432 33 55554
No 310
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.40 E-value=0.27 Score=51.36 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=41.7
Q ss_pred CCCCCcccchhhHHhHHHhhc-cCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG 240 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 240 (1243)
..-..++|.|...+.+.+--. .-.+...--|-+||.-|.||+.|+|++.+.+..+.-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 344578999988887754211 1111234567899999999999999999998877654
No 311
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.40 E-value=0.12 Score=52.13 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=36.8
Q ss_pred HHHHHhhcCceEEEEEec----CCChhhhHHH--hcCCCCCCCCCeEEEEecccchhcccCC
Q 000874 282 QFTKERVRRMKVLIVLDD----VNKVGQLEGL--IGGLDQYGPGSRIVVTTRDKGVLEKFGV 337 (1243)
Q Consensus 282 ~~l~~~L~~kr~LlVLDd----v~~~~~~~~l--~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 337 (1243)
-.|.+.+-+++-+|+=|. +|....|+-+ ...+ ...|..||++|-+.++...+..
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhccC
Confidence 446666678888888884 5555445432 2222 2568999999999998877653
No 312
>PRK04040 adenylate kinase; Provisional
Probab=94.39 E-value=0.039 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.4
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..+|+|+|++|+||||+++.+..++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999874
No 313
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.39 E-value=0.015 Score=57.39 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=31.4
Q ss_pred ccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 189 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
||....++++.+.+..-. ....-|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 566667777776665433 334457899999999999999998853
No 314
>PRK03839 putative kinase; Provisional
Probab=94.38 E-value=0.031 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 315
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.38 E-value=0.032 Score=47.46 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|+|.|..|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 316
>PRK08233 hypothetical protein; Provisional
Probab=94.38 E-value=0.031 Score=58.24 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998654
No 317
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.35 E-value=0.11 Score=57.50 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=59.4
Q ss_pred hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccc
Q 000874 194 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKL 273 (1243)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~ 273 (1243)
.++.+..++.. ...+|.|.|..|.||||+++++...+...-..++.+.+-.+ ..+..+ .++.- .
T Consensus 68 ~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E-----~~~~~~-----~q~~v--~ 131 (264)
T cd01129 68 NLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE-----YQIPGI-----NQVQV--N 131 (264)
T ss_pred HHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce-----ecCCCc-----eEEEe--C
Confidence 34445555532 34589999999999999999998876542223344432211 111100 00000 0
Q ss_pred cccCCCccHHHHHhhcCceEEEEEecCCChhhhHHHh
Q 000874 274 EVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLI 310 (1243)
Q Consensus 274 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1243)
...+....+.++..|+...=.|+++++.+.+....+.
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 0112234466888888889999999999988655443
No 318
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.34 E-value=0.13 Score=61.78 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=47.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKER 287 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 287 (1243)
..-+|.-++|++|+||||||..++++.. |.. ..+ ..|+. .....+.+.+...+.....-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--YsV----vEI-NASDe-Rt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YSV----VEI-NASDE-RTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ceE----EEe-ccccc-ccHHHHHHHHHHHHhhccccc------------
Confidence 5678999999999999999999998632 221 111 11222 445555555555443221110
Q ss_pred hcCceEEEEEecCCChh
Q 000874 288 VRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~~ 304 (1243)
..+++..||+|.++-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 02577889999997654
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.26 E-value=0.15 Score=52.57 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.-.+++|.|..|.|||||++.+..-.. ...+.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 58 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEW 58 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEE
Confidence 345899999999999999999887433 23444444
No 320
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.25 E-value=0.31 Score=55.81 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=33.5
Q ss_pred cccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 188 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
+||....++++.+.+..-. ..-.-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777776665433 23345789999999999999999874
No 321
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.25 E-value=0.61 Score=57.11 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
....++|....++++.+.+..-. ..-.-|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999998888776544 334567899999999999999998853
No 322
>PRK06762 hypothetical protein; Provisional
Probab=94.25 E-value=0.038 Score=56.61 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.++|.|.|++|+||||+|+++..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 323
>PRK00625 shikimate kinase; Provisional
Probab=94.23 E-value=0.034 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.|.++||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 324
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.20 E-value=0.042 Score=58.59 Aligned_cols=28 Identities=43% Similarity=0.592 Sum_probs=24.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+...+|+|+|++|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998654
No 325
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.17 E-value=0.17 Score=54.85 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.0
Q ss_pred hHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhccc------CceEEEe
Q 000874 197 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFMS 245 (1243)
Q Consensus 197 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 245 (1243)
.+..+|..+- ..-.++.|+|.+|+|||++|..++......- ..++|+.
T Consensus 7 ~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 4445554332 4567999999999999999999987655444 5667775
No 326
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.22 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..++|.++|+.|+||||.+..++.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999888654
No 327
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.11 E-value=0.097 Score=58.89 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+..|..+|..+.-..-+++-|+|++|+||||||..++......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344556665222255689999999999999999998877666666777875
No 328
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.2 Score=46.46 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=33.9
Q ss_pred Cccc-chhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 187 GLVG-LNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 187 ~~vG-r~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
.+|| .+.++++|++.+...- -.+.+=|.++|++|.|||-||++|++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 3444 5677777776654321 145667889999999999999999974
No 329
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.07 E-value=0.13 Score=53.31 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=62.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHH------HHHHhhhcccc------ccc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQK------QMLSTILSEKL------EVA 276 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~------~ll~~l~~~~~------~~~ 276 (1243)
.-.+++|.|..|.|||||++.++.... ...+.+++.... . .. .....+.. +++..++-... ..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~-~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-L-AS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-C-Cc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 446899999999999999999987543 345666654211 0 01 11111111 12333222111 111
Q ss_pred CCC-ccHHHHHhhcCceEEEEEecCCCh---hhhHHHhcCCCCC-CC-CCeEEEEecccchhc
Q 000874 277 GPN-IPQFTKERVRRMKVLIVLDDVNKV---GQLEGLIGGLDQY-GP-GSRIVVTTRDKGVLE 333 (1243)
Q Consensus 277 ~~~-~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~-~~-gsrIIiTTR~~~v~~ 333 (1243)
+.+ ..-.+...+-..+=++++|+--.. ...+.+...+... .. |..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 111 112344556667889999986322 2222222222111 22 667888888776543
No 330
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.04 E-value=0.14 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
+.|.|+|.+|+||||+|+.+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999876653
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.83 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
...++++++|+.|+||||++..++.....+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999999999886654433455553
No 332
>PRK06547 hypothetical protein; Provisional
Probab=93.92 E-value=0.071 Score=54.61 Aligned_cols=27 Identities=41% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
....+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998864
No 333
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.22 Score=53.91 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=26.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
-+..++|||++|-|||-+|++|+..+--.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999876554
No 334
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.91 E-value=0.1 Score=61.26 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..++|++..++.+...+..+. -|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~-----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC-----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 369999999999888776543 4779999999999999999986543
No 335
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.55 Score=53.98 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=78.3
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR 290 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 290 (1243)
|=--++|++|.|||++..++++.+. +-++.-....+... .+ ++.++.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n----~d-Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLD----SD-LRHLLLA---------------------TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCc----HH-HHHHHHh---------------------CC
Confidence 4467899999999999999998543 33444333222211 11 2222211 12
Q ss_pred ceEEEEEecCCChhh--------------------hHHHhcCCC--CCCC-CCeEEE-Eecccchh-----cccCCCcce
Q 000874 291 MKVLIVLDDVNKVGQ--------------------LEGLIGGLD--QYGP-GSRIVV-TTRDKGVL-----EKFGVEEEK 341 (1243)
Q Consensus 291 kr~LlVLDdv~~~~~--------------------~~~l~~~~~--~~~~-gsrIIi-TTR~~~v~-----~~~~~~~~~ 341 (1243)
.|-.||+.|+|-.-+ +..|+..++ |... +-|||| ||..++-+ ..-.++ .
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD--m 363 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD--M 363 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce--e
Confidence 355666666643211 222333322 2222 236655 66554432 222244 4
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHHh-hhhCCC
Q 000874 342 IYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLG-SSLCLK 399 (1243)
Q Consensus 342 ~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~g-~~L~~~ 399 (1243)
-+.+.-=+.+.-..||..+..... +. .+..+|.+...|.-+.=..++ .++..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 577777888888888888863322 22 344555555555544433344 444444
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.91 E-value=0.049 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
No 337
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.90 E-value=0.037 Score=51.85 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=22.0
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccc
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
|-|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 338
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.89 E-value=0.081 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 339
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.88 E-value=0.12 Score=56.35 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh----cccCceEEEeeccccccCCCChHHHHHHHHHh--hhcccccc---cCCCc
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS----SEFEGRCFMSDVRRNSETGGGLEHLQKQMLST--ILSEKLEV---AGPNI 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~~~~~---~~~~~ 280 (1243)
-..++|.|-.|+|||||+..+.++.. .+-+.++|.. +++. ...+.++.+.+... +...-.-. +....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR---~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGIT---MEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-eccc---cHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 34579999999999999999887643 2234455553 3332 24456666666554 11111100 11110
Q ss_pred --------cHHHHHhh---cCceEEEEEecCCChhh
Q 000874 281 --------PQFTKERV---RRMKVLIVLDDVNKVGQ 305 (1243)
Q Consensus 281 --------~~~l~~~L---~~kr~LlVLDdv~~~~~ 305 (1243)
.-.+.+++ .++++|+++||+-...+
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 01123333 37899999999965543
No 340
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.82 E-value=0.12 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHHH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998853
No 341
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.79 E-value=0.24 Score=59.17 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=37.7
Q ss_pred hhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 193 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.-+.++.++|..+- ..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 78 TGi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34556667775443 45678999999999999999999876655434566764
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.75 E-value=0.052 Score=56.84 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
++.+|+|.|++|+||||+|+.++.++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 343
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.73 E-value=0.11 Score=61.12 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=52.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEEeeccccccCCCChHHHHHHHHHh-hhccccc-c---cCCCc---
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEKLE-V---AGPNI--- 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~---~~~~~--- 280 (1243)
-..++|.|.+|+|||||+..+.+....+ -+.++|. .+++. ...+.++.+.+... ......- . +....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 4568999999999999999998876543 3444444 34332 24455666666543 1111110 0 11111
Q ss_pred -----cHHHHHhh---cCceEEEEEecCCCh
Q 000874 281 -----PQFTKERV---RRMKVLIVLDDVNKV 303 (1243)
Q Consensus 281 -----~~~l~~~L---~~kr~LlVLDdv~~~ 303 (1243)
.-.+.+++ +++++|+++||+-..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 11233444 378999999999544
No 344
>PHA00729 NTP-binding motif containing protein
Probab=93.70 E-value=0.083 Score=55.88 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.+...|.|.|.+|+||||||.++.+++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998754
No 345
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.66 E-value=0.61 Score=55.54 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
..++++++|+.|+||||++.+++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3579999999999999999999986643
No 346
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.66 E-value=0.052 Score=56.04 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=23.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
...|.|+|++|+||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.65 E-value=0.34 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
++.+.|++|+||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 348
>PRK06217 hypothetical protein; Validated
Probab=93.65 E-value=0.22 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.|.|.|++|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 349
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.64 E-value=0.18 Score=59.34 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=53.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh-hhccccc-c---cCCCc----
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEKLE-V---AGPNI---- 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~---~~~~~---- 280 (1243)
-..++|.|..|+|||||+..++...+.+...++.+..+++. ...+.++.+.++.. ......- . +....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999888665443434434344332 24456666666654 1111110 0 11111
Q ss_pred ----cHHHHHhh---cCceEEEEEecCCCh
Q 000874 281 ----PQFTKERV---RRMKVLIVLDDVNKV 303 (1243)
Q Consensus 281 ----~~~l~~~L---~~kr~LlVLDdv~~~ 303 (1243)
.-.+.+++ +++++||++||+-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 11233444 679999999999544
No 350
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.63 E-value=0.18 Score=56.36 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..++|+|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999998876543
No 351
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.63 E-value=1.2 Score=47.63 Aligned_cols=212 Identities=14% Similarity=0.227 Sum_probs=113.8
Q ss_pred CCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc------ccCceEEEeeccc------c--
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFMSDVRR------N-- 250 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~-- 250 (1243)
.+.+.++++.-..+.++... .+.+-.-++|+.|.||-|.+..+.+++-+ +-+...|...... .
T Consensus 12 l~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34577777777777776653 56777889999999999988887775422 2334444432211 0
Q ss_pred --------ccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceE-EEEEecCCChh--hhHHHhcCCCCCCCC
Q 000874 251 --------SETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKV-LIVLDDVNKVG--QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 251 --------~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~--~~~~l~~~~~~~~~g 319 (1243)
|+....-+-+.++++.+...... +.-. ..+.| ++|+-.++... .-.++..........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----------ie~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----------IETQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----------hhhc-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 11111111233444444222110 0000 01122 55666665432 122333322233456
Q ss_pred CeEEEEecccc-hhcccCCCcceEEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hhHHHHhhhh-
Q 000874 320 SRIVVTTRDKG-VLEKFGVEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNP-LVLKVLGSSL- 396 (1243)
Q Consensus 320 srIIiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glP-Lal~~~g~~L- 396 (1243)
+|+|+...+.. +........ -.+.++..+++|-...++..+-+..-.-+ .+++.+|+++++|+- .||-++-..-
T Consensus 158 ~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 78777544322 111111111 56899999999999999887754443222 678999999999863 3443332211
Q ss_pred ------CC---CCHHHHHHHHHHHhh
Q 000874 397 ------CL---KRKSHWENVLDDLNR 413 (1243)
Q Consensus 397 ------~~---~~~~~w~~~l~~l~~ 413 (1243)
.+ ...-+|+-.+....+
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHH
Confidence 11 134689988886644
No 352
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.60 E-value=0.36 Score=49.24 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=44.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcC--
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRR-- 290 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-- 290 (1243)
+.|.|..|+|||++|.++... ....++|+... .. .+. ++++.+..........+...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~-~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EA-FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----Cc-CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999999765 23456676422 11 322 34554444322223333333333345555532
Q ss_pred ceEEEEEecC
Q 000874 291 MKVLIVLDDV 300 (1243)
Q Consensus 291 kr~LlVLDdv 300 (1243)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347999986
No 353
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.22 Score=53.50 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=34.4
Q ss_pred HHHHHhhcCceEEEEEec----CCCh--hhhHHHhcCCCCCCCCCeEEEEecccchhcc
Q 000874 282 QFTKERVRRMKVLIVLDD----VNKV--GQLEGLIGGLDQYGPGSRIVVTTRDKGVLEK 334 (1243)
Q Consensus 282 ~~l~~~L~~kr~LlVLDd----v~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 334 (1243)
-.+.+.|-.+.=|+|||. ||.. ..+..++..+. ..|..||++|-|-+....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 456777888999999995 3333 33555555444 238889999988765544
No 354
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.6 Score=58.35 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.++|+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999887653
No 355
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.055 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=23.8
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 356
>PRK09354 recA recombinase A; Provisional
Probab=93.56 E-value=0.15 Score=57.75 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=38.2
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+..|..+|..+.-..-+++-|+|++|+||||||..++......-..++|++
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 445556665222256789999999999999999998887666666778875
No 357
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.73 Score=58.23 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCcccchhhHHhHHHhhccCC---CC--CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDL---SD--TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHL 260 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~---~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 260 (1243)
..++|-+..+..|-+.+.... .+ ..-...+.|+.|+|||-||++++.-+.+..+..+-+ ++.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri-----------Dmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL-----------DMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe-----------chhhh
Confidence 357888888888887775421 12 456678999999999999999999876665554444 23333
Q ss_pred HHHHHHhhhcccccccCCCccHHHHHhhcCceE-EEEEecCCChhh
Q 000874 261 QKQMLSTILSEKLEVAGPNIPQFTKERVRRMKV-LIVLDDVNKVGQ 305 (1243)
Q Consensus 261 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~~ 305 (1243)
++ .+++.+.....-+......+.+.++.+++ +|.||||+..+.
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 33 44555555555555555678888888875 556699987653
No 358
>PRK13947 shikimate kinase; Provisional
Probab=93.50 E-value=0.054 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
-|.|+||+|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999986433
No 359
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.47 E-value=0.18 Score=56.82 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=36.5
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..|..+|..+.-..-+++-|+|++|+||||||..++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 44555665222256789999999999999999998887666656667774
No 360
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.47 E-value=0.3 Score=47.34 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=4.7
Q ss_pred ccCCCCCcEEEe
Q 000874 855 LSGLSSLKFLYI 866 (1243)
Q Consensus 855 ~~~l~~L~~L~L 866 (1243)
+..+++|+.+.+
T Consensus 77 F~~~~~l~~i~~ 88 (129)
T PF13306_consen 77 FSNCTNLKNIDI 88 (129)
T ss_dssp TTT-TTECEEEE
T ss_pred cccccccccccc
Confidence 333444444444
No 361
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.46 E-value=0.081 Score=54.77 Aligned_cols=26 Identities=46% Similarity=0.641 Sum_probs=22.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
+|+|.|..|+||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 362
>PRK08356 hypothetical protein; Provisional
Probab=93.43 E-value=0.14 Score=53.83 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=19.7
Q ss_pred eEEEEEEecCCchhHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIF 231 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~ 231 (1243)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999994
No 363
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.43 E-value=0.31 Score=58.22 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+.++.++|..+- ..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 455666665433 34569999999999999999999887764444567764
No 364
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.34 E-value=0.098 Score=61.95 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=51.5
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEEeeccccccCCCChHHHHHHHHHhhhccccccc------CCCccH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVA------GPNIPQ 282 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~------~~~~~~ 282 (1243)
-..++|+|.+|.|||||++.+++.+... -+..+++..+.+-. ..+.++.+.+-.++-....+.. ...+.-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999977543 34444454444432 3344454443111111111100 000111
Q ss_pred HHHHhh--cCceEEEEEecCCChhh
Q 000874 283 FTKERV--RRMKVLIVLDDVNKVGQ 305 (1243)
Q Consensus 283 ~l~~~L--~~kr~LlVLDdv~~~~~ 305 (1243)
.+.+++ .++.+||++|++-....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 122333 68899999999865544
No 365
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.33 E-value=0.11 Score=53.81 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
...+|+|.|++|+||||+|++++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999997754
No 366
>PRK05439 pantothenate kinase; Provisional
Probab=93.32 E-value=0.11 Score=58.01 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=29.2
Q ss_pred HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 198 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 198 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
+..++........-+|||.|.+|+||||+|+.+...+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334443323356789999999999999999999886653
No 367
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.31 E-value=0.1 Score=56.52 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=26.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
....+|||.|..|.|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 568899999999999999999999876654
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.29 E-value=0.12 Score=50.87 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=25.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceE
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC 242 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 242 (1243)
++|.|+|..|+|||||++.+.+.+..+--.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47999999999999999999998775533333
No 369
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.26 E-value=0.63 Score=56.69 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=37.4
Q ss_pred CCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
...++|....+.++...+..-. ..-..|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3468999988888877665433 33445789999999999999999874
No 370
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.25 E-value=0.091 Score=55.70 Aligned_cols=85 Identities=20% Similarity=0.415 Sum_probs=49.4
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh-hhccc-ccc--cC---------
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEK-LEV--AG--------- 277 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~-~~~--~~--------- 277 (1243)
..++|.|.+|+|||+|+..+.+..... ..+++. +++. ...+.++.+++... ..... .-. ..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-iGer---~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-IGER---GREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-ESEC---HHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee-cccc---chhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 467899999999999999999876432 334543 2221 13455666665443 11111 100 11
Q ss_pred ----CCccHHHHHhhcCceEEEEEecCCCh
Q 000874 278 ----PNIPQFTKERVRRMKVLIVLDDVNKV 303 (1243)
Q Consensus 278 ----~~~~~~l~~~L~~kr~LlVLDdv~~~ 303 (1243)
..+.+++++ ++|.+|+++||+...
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHH
Confidence 111233333 689999999998443
No 371
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.25 Score=52.75 Aligned_cols=56 Identities=36% Similarity=0.459 Sum_probs=41.0
Q ss_pred CCCCCcccchhhHHhHHHhhccCC----------CCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
....++=|.++++++|++.....- -...+=|.++|.+|.|||-||++|+|+.+..|
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 334567788999999988764321 13355678999999999999999999644333
No 372
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.6 Score=54.20 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=79.7
Q ss_pred CCCcccchhhH---HhHHHhhccCC------CCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccC--
Q 000874 185 SNGLVGLNSRI---EQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSET-- 253 (1243)
Q Consensus 185 ~~~~vGr~~~~---~~l~~~L~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-- 253 (1243)
.++.-|.|+.. ++|.+.|.... ..=++=|.++|++|.|||-||++++-+..--| +...+...+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF-----F~~sGSEFdEm~ 377 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF-----FYASGSEFDEMF 377 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe-----Eeccccchhhhh
Confidence 45566777655 45555665432 12245688999999999999999987643222 2111111111
Q ss_pred -CCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChh-------------hhHHHhcCCCCCCCC
Q 000874 254 -GGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVG-------------QLEGLIGGLDQYGPG 319 (1243)
Q Consensus 254 -~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~g 319 (1243)
..+.+++. +.....-..-++.|.+|.++... .+.+++..++.|.+.
T Consensus 378 VGvGArRVR--------------------dLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 378 VGVGARRVR--------------------DLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred hcccHHHHH--------------------HHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 01111111 11222223457999999885321 256777777777654
Q ss_pred CeEEE--Eecccchhcc-----cCCCcceEEecCCCCHHHHHHHHHHhh
Q 000874 320 SRIVV--TTRDKGVLEK-----FGVEEEKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 320 srIIi--TTR~~~v~~~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
.-||| .|..++.+.. -..+ ..+.|+..+-.-..++|..+.
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD--~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFD--RHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccc--eeEecCCCCcccHHHHHHHHH
Confidence 44443 3433332222 1233 456666666555566666554
No 373
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.18 E-value=0.12 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
....+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999999765443334555
No 374
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.16 E-value=0.074 Score=59.37 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=68.4
Q ss_pred CcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHH
Q 000874 187 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLS 266 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 266 (1243)
.+.-.....+++.++|...- ...+.|.|.|..|.||||+++++...+...-...+-+.+..+ ..+ .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E-----~~l--------~ 170 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE-----LRL--------P 170 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS------S----------S
T ss_pred hccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc-----eee--------c
Confidence 34433444455555554421 345789999999999999999999876655122333332211 111 0
Q ss_pred hhhccccc--ccCCCccHHHHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeE-EEEec
Q 000874 267 TILSEKLE--VAGPNIPQFTKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRI-VVTTR 327 (1243)
Q Consensus 267 ~l~~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrI-IiTTR 327 (1243)
........ .+.....+.++..|+...=.+|++.+.+.+.+..+... ..|..+ +-|.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000000 12334456788888988889999999988877764332 456666 44433
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=93.11 E-value=0.18 Score=54.14 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..-.++.|.|.+|+|||++|..+......+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568899999999999999998776544444566664
No 376
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.10 E-value=0.038 Score=34.94 Aligned_cols=18 Identities=56% Similarity=0.877 Sum_probs=9.3
Q ss_pred CCEEeCcCCCCcccchhc
Q 000874 884 LTTLNLSGNNFESLPASI 901 (1243)
Q Consensus 884 L~~L~Ls~n~l~~lp~~l 901 (1243)
|++|+|++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.09 E-value=0.25 Score=54.87 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999998876554
No 378
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.08 E-value=0.35 Score=56.72 Aligned_cols=92 Identities=20% Similarity=0.332 Sum_probs=53.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh-hhccccc----ccCCCc----
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEKLE----VAGPNI---- 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~----~~~~~~---- 280 (1243)
-..++|.|..|+|||||+..+......+...++.+..+++.. ..+.++.++++.. ......- .+....
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999999999886654434444444444322 4456666666543 1111100 011111
Q ss_pred ----cHHHHHhh---cCceEEEEEecCCChh
Q 000874 281 ----PQFTKERV---RRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 281 ----~~~l~~~L---~~kr~LlVLDdv~~~~ 304 (1243)
.-.+.+++ +++++||++||+-.-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 11233444 4689999999995543
No 379
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.07 E-value=0.08 Score=55.88 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG 240 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 240 (1243)
....+|.++||+|.||||..+.++..+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 456688899999999999999999987777653
No 380
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.07 E-value=2.4 Score=48.03 Aligned_cols=48 Identities=21% Similarity=0.089 Sum_probs=32.3
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchhH
Q 000874 342 IYGVNGLEFDEAFELFCNFAFEENHCP-EDLNWHSRRVVWYATSNPLVL 389 (1243)
Q Consensus 342 ~~~v~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~glPLal 389 (1243)
+++|++++.+|+..++..++-.+-... ...+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764433222 222334555555668888643
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.04 E-value=0.14 Score=53.46 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=25.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcccCceEEEee
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSD 246 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 246 (1243)
.|+|+|-||+||||+|..+..++..+=...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977766555333444433
No 382
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.02 E-value=0.076 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.5
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
++|.+.|++|+||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.01 E-value=0.35 Score=52.73 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=35.6
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..|.++|..+- ..-.++.|.|.+|.|||++|..+......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555565443 56689999999999999999987765434556777775
No 384
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.95 E-value=0.066 Score=55.42 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=92.92 E-value=0.65 Score=45.94 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=33.2
Q ss_pred HHHHHHhhhcceeEEeeccCcccchhhHHHHHHHHHhHhcCCCEEEeEEEEeC
Q 000874 55 PVLLNAIQGSKISLIIFSKDYASSKWCLNELVKILECKNTNGQIVIPVFYNVS 107 (1243)
Q Consensus 55 ~~l~~ai~~s~~~i~v~s~~y~~s~wcl~el~~i~~~~~~~~~~v~Pvfy~v~ 107 (1243)
.++.++|+++.+.+.|+......+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367899999999999998766555552 25555555332 2334566665655
No 386
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.92 E-value=0.2 Score=55.52 Aligned_cols=102 Identities=21% Similarity=0.418 Sum_probs=63.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh--hhccccc------c------
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST--ILSEKLE------V------ 275 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~~~~------~------ 275 (1243)
-.-||+.|-+|+|||-+.+++.+.+..+..+...+.-+++.... =.++..++... +.....- .
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 35689999999999999999999888777776666666654433 23444444433 1111100 0
Q ss_pred ---cCCCccHHHHHhhcCceEEEEEecCCChhh----hHHHhcCCCC
Q 000874 276 ---AGPNIPQFTKERVRRMKVLIVLDDVNKVGQ----LEGLIGGLDQ 315 (1243)
Q Consensus 276 ---~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----~~~l~~~~~~ 315 (1243)
.+..+.+++++. .++.+|+.+||+..-.| ...+++..|.
T Consensus 224 ValtGlT~AEyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 224 VALTGLTMAEYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred ehhhhhhHHHHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 222333444443 36789999999965433 5666666553
No 387
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.91 E-value=0.91 Score=55.64 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=37.1
Q ss_pred CCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 183 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
...+.++|....+.++.+.+..-. ..-.-|.|+|-.|.||+++|+++...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA-MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh-CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 355689999998888776664322 12233779999999999999998663
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.90 E-value=0.27 Score=52.17 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIF 231 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~ 231 (1243)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999985
No 389
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.89 E-value=0.066 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 390
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.88 E-value=0.069 Score=57.27 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 391
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.82 E-value=0.082 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+|.|.|++|.||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998754
No 392
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.80 E-value=0.14 Score=52.25 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=59.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCC-ccHHHHHh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPN-IPQFTKER 287 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 287 (1243)
.-.+++|.|..|.|||||.+.++.... ...+.+++....- .. ....+..+. .+.- ..+.++.+ ..-.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~--~~-~~~~~~~~~---~i~~-~~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEV--SF-ASPRDARRA---GIAM-VYQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEC--Cc-CCHHHHHhc---CeEE-EEecCHHHHHHHHHHHH
Confidence 345899999999999999999987543 3455666542110 00 111111100 0000 00011111 11234455
Q ss_pred hcCceEEEEEecCCCh---hhhHHHhcCCCCC-CCCCeEEEEecccchhc
Q 000874 288 VRRMKVLIVLDDVNKV---GQLEGLIGGLDQY-GPGSRIVVTTRDKGVLE 333 (1243)
Q Consensus 288 L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~-~~gsrIIiTTR~~~v~~ 333 (1243)
+-.++=++++|+--.. ...+.+...+... ..|..||++|.+...+.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5667788899986332 1122222222111 24667888888876443
No 393
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.76 E-value=0.064 Score=53.91 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=18.6
Q ss_pred EEecCCchhHHHHHHHHHHH
Q 000874 215 IWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 215 I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 394
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.72 E-value=0.07 Score=56.43 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|||.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 395
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.70 E-value=0.39 Score=49.37 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=26.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.-.+++|.|..|.|||||.+.++.... ...+.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~ 61 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILI 61 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEE
Confidence 345899999999999999999988543 23455555
No 396
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.70 E-value=0.18 Score=55.54 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=34.2
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceE
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC 242 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 242 (1243)
++.+.++.. .++.+|.|.|.+|.|||||+..+.+.++......+
T Consensus 93 ~~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 93 ERNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 345555544 67899999999999999999999998876654333
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.42 Score=54.15 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=57.4
Q ss_pred hHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcc--
Q 000874 194 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSE-- 271 (1243)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~-- 271 (1243)
.+.++.+.|..+- -.-.+|.|-|-+|||||||.-+++.++..+- .+.|+. ++ ....++.- -...|+..
T Consensus 78 g~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE-----ES~~Qikl-RA~RL~~~~~ 147 (456)
T COG1066 78 GIEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE-----ESLQQIKL-RADRLGLPTN 147 (456)
T ss_pred ChHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC-----cCHHHHHH-HHHHhCCCcc
Confidence 3456666665432 2346899999999999999999999988776 777774 12 22222221 12224322
Q ss_pred cccc-cCCCccHHHHHhhcCceEEEEEecCC
Q 000874 272 KLEV-AGPNIPQFTKERVRRMKVLIVLDDVN 301 (1243)
Q Consensus 272 ~~~~-~~~~~~~~l~~~L~~kr~LlVLDdv~ 301 (1243)
+... ...++.+.++..-+.+.-++|+|-+.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 2221 12222222333334577899999873
No 398
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.69 E-value=0.14 Score=57.66 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=28.5
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.|++.+.|.||+||||+|.+.+-+.......+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 58999999999999999999888777666544444
No 399
>PRK13949 shikimate kinase; Provisional
Probab=92.66 E-value=0.086 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
-|.|+|+.|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 400
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.66 E-value=0.18 Score=58.85 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=32.6
Q ss_pred hhhHHhHHHhhc-----cCCCCCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 192 NSRIEQIKPFLC-----MDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 192 ~~~~~~l~~~L~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
..-+.+++.||. ... -+.++.-|.|++|+||||..+.++...
T Consensus 88 kkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677788886 222 567899999999999999999988753
No 401
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.61 E-value=0.16 Score=61.41 Aligned_cols=128 Identities=19% Similarity=0.306 Sum_probs=68.6
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCc---------eEEEeeccccc-cC----------CCCh-HHHHHHHHHhhh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEG---------RCFMSDVRRNS-ET----------GGGL-EHLQKQMLSTIL 269 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---------~~~~~~~~~~~-~~----------~~~l-~~l~~~ll~~l~ 269 (1243)
-.|+|+|+.|+|||||.+.+....... .+ ..|+.--.... .. .... ..-.+..+..++
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 468999999999999999997754322 11 22222111000 00 0010 222223333311
Q ss_pred --ccccc-----ccC-CCccHHHHHhhcCceEEEEEec------CCChhhhHHHhcCCCCCCCCCeEEEEecccchhccc
Q 000874 270 --SEKLE-----VAG-PNIPQFTKERVRRMKVLIVLDD------VNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKF 335 (1243)
Q Consensus 270 --~~~~~-----~~~-~~~~~~l~~~L~~kr~LlVLDd------v~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 335 (1243)
.+... .++ +...-.+...+-.+.=+||||. ++..+.++..+..++ | .||+.|-|+......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----G-tvl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----G-TVLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----C-eEEEEeCCHHHHHhh
Confidence 11110 122 2222334555567788999994 444555555554433 4 588889999888776
Q ss_pred CCCcceEEecCC
Q 000874 336 GVEEEKIYGVNG 347 (1243)
Q Consensus 336 ~~~~~~~~~v~~ 347 (1243)
.. .++.+++
T Consensus 503 a~---~i~~~~~ 511 (530)
T COG0488 503 AT---RIWLVED 511 (530)
T ss_pred cc---eEEEEcC
Confidence 43 6777764
No 402
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.60 E-value=0.12 Score=52.62 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
....+++|+|..|+|||||++.+...+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 356799999999999999999999877653
No 403
>PRK13948 shikimate kinase; Provisional
Probab=92.51 E-value=0.095 Score=54.13 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
...+.|.++||.|+||||+++.+..+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999998764
No 404
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.51 E-value=0.25 Score=54.46 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc-----ccCCCccH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE-----VAGPNIPQ 282 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-----~~~~~~~~ 282 (1243)
.+..-++|+|..|.|||||.+.++..++.. .+.+++... ..... ....++...+ ..+...... .+...-..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 345789999999999999999999866543 334444211 10000 0111222111 001111100 01111111
Q ss_pred HHHHhhc-CceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEecccchh
Q 000874 283 FTKERVR-RMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVL 332 (1243)
Q Consensus 283 ~l~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~ 332 (1243)
-+...+. ..+=++|+|.+...+.+..+..... .|..||+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2233333 5678999999988777776665542 477899999876553
No 405
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.45 E-value=0.53 Score=52.58 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=35.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc-cCceEEEeeccccccCCCChHHHHHHHHHh
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFMSDVRRNSETGGGLEHLQKQMLST 267 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 267 (1243)
..-.++.|.|.+|+||||+|.+++.....+ =..++|+.. . ....++...+.+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~------E-~~~~~~~~r~~~~ 81 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL------E-EPVVRTARRLLGQ 81 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc------c-cCHHHHHHHHHHH
Confidence 344588899999999999999998876544 345666642 1 2334555555544
No 406
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.45 E-value=0.18 Score=58.01 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.9
Q ss_pred CcccchhhHHhHHHhhccC-----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 187 GLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
++||.+...+.+.-.+... .....+-|.++|++|+|||++|++++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4777777766665443321 012246788999999999999999999765443
No 407
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.43 E-value=0.31 Score=52.16 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=29.3
Q ss_pred HhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 196 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 196 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
.++.+.+.... .+..+|||.|++|.||+||..++...+..+
T Consensus 16 ~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444443333 567899999999999999999999877655
No 408
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.42 E-value=0.15 Score=49.24 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.-.+|.+.|.-|.||||+++.++..+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999864
No 409
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.39 E-value=0.081 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.688 Sum_probs=22.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
.|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 410
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.38 E-value=0.091 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+|.|.|+.|+||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 411
>PHA02244 ATPase-like protein
Probab=92.33 E-value=0.43 Score=54.25 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCcccchhhHH----hHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 186 NGLVGLNSRIE----QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 186 ~~~vGr~~~~~----~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
..++|....+. .+..++.. + .-|.|+|++|+|||+||++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~----~-~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA----N-IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc----C-CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34566554443 34444433 2 236789999999999999999875433
No 412
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.30 E-value=0.14 Score=59.83 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccc----cC-------
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEV----AG------- 277 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~----~~------- 277 (1243)
.-..++|+|..|+|||||++.+..... ...+++++. ++ ....+.++.+..+.......... +.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~li--Ge---rgrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALV--GE---RGREVREFLEDTLADNLKKAVAVVATSDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeec--cc---CCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHH
Confidence 345799999999999999988876432 122333331 11 11344444443333321111110 11
Q ss_pred -----CCccHHHHHhhcCceEEEEEecCCChh
Q 000874 278 -----PNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 278 -----~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
..+.+++++ +++.+|+++||+-...
T Consensus 238 ~~~~a~~iAEyfrd--~G~~Vll~~DslTr~A 267 (450)
T PRK06002 238 APLTATAIAEYFRD--RGENVLLIVDSVTRFA 267 (450)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEeccchHHHH
Confidence 112233443 4899999999985543
No 413
>PRK13946 shikimate kinase; Provisional
Probab=92.29 E-value=0.095 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.+.|.+.||.|+||||+|+.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999863
No 414
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.27 E-value=1.5 Score=55.59 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=36.3
Q ss_pred CCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
.+.++|....+.++.+.+..-...+. -|.|+|..|+||+++|+++.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~-pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSF-PVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCC-CEEEECCCCcCHHHHHHHHHHh
Confidence 46688988888877766654331223 3779999999999999999874
No 415
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.27 E-value=0.24 Score=51.75 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhc--ccc-cccCCCccHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILS--EKL-EVAGPNIPQFTKE 286 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~--~~~-~~~~~~~~~~l~~ 286 (1243)
-..++|.|..|.||||+++++...+... ...+.+.+..+.... . .... ++.. ... ........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998866533 233333221111000 0 0000 0000 000 0111233455677
Q ss_pred hhcCceEEEEEecCCChhhhHHHh
Q 000874 287 RVRRMKVLIVLDDVNKVGQLEGLI 310 (1243)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1243)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 778788889999999887766543
No 416
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.24 E-value=0.13 Score=57.56 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=77.6
Q ss_pred CcccchhhHHhHHHhhccCCC--------------CCeEEEEEEecCCchhHHHHHHHHHHHhcccC-------ceEEEe
Q 000874 187 GLVGLNSRIEQIKPFLCMDLS--------------DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE-------GRCFMS 245 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~ 245 (1243)
...|...+...|.+.+..... ..--++.|+|..|.||||+.+.+.......-+ +.+=+.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 345556666666555432210 22346899999999999999999875432211 111100
Q ss_pred -----e-ccccccCCCChHHHHHHHHHhhhc-------------cccc---------ccCCCccHHHHHhhcCceEEEEE
Q 000874 246 -----D-VRRNSETGGGLEHLQKQMLSTILS-------------EKLE---------VAGPNIPQFTKERVRRMKVLIVL 297 (1243)
Q Consensus 246 -----~-~~~~~~~~~~l~~l~~~ll~~l~~-------------~~~~---------~~~~~~~~~l~~~L~~kr~LlVL 297 (1243)
. +....+..++-..+++++.+..++ .+.- .++..-...+...+..+.=+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 000111112222444444443332 1100 02233334566677778788999
Q ss_pred ecCCChhh---hHHHhcCCCCC--CCCCeEEEEecccchhcccCCC
Q 000874 298 DDVNKVGQ---LEGLIGGLDQY--GPGSRIVVTTRDKGVLEKFGVE 338 (1243)
Q Consensus 298 Ddv~~~~~---~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~~~~ 338 (1243)
|.+...-+ ...++..+... ..|+.+++.|+.+++...+..+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 98743321 11122221111 2577788888888888777554
No 417
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.24 E-value=0.16 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHhc
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.24 E-value=0.1 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 419
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.23 E-value=0.11 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|.|+|++|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 420
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.22 E-value=0.16 Score=59.20 Aligned_cols=88 Identities=15% Similarity=0.287 Sum_probs=50.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc--c---cC------
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE--V---AG------ 277 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~---~~------ 277 (1243)
.-..++|.|..|+|||||++.++..... +..++. .+++. ...+.++.+.++..-.....- . +.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER---~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGER---GREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCC---hHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 3457999999999999999999864322 344443 34332 234455555544331111100 0 11
Q ss_pred ------CCccHHHHHhhcCceEEEEEecCCChh
Q 000874 278 ------PNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 278 ------~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
..+.+++++ +++++|+++||+-...
T Consensus 235 ~a~~~A~tiAEyfrd--~G~~VLl~~DslTR~A 265 (444)
T PRK08972 235 KGCETATTIAEYFRD--QGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEEcChHHHH
Confidence 112233443 5899999999995543
No 421
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.21 E-value=0.65 Score=47.09 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=59.4
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhh--cccccccCCC--------
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTIL--SEKLEVAGPN-------- 279 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~--~~~~~~~~~~-------- 279 (1243)
..+|-|++-.|.||||.|-.++-+...+=-.++++-=+ ..... .+-....+.+.-.+. .........+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFl-Kg~~~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFI-KGAWP-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe-cCCcc-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 45788888899999999998888655442223222111 11111 222222222200000 0000110001
Q ss_pred --ccHHHHHhhcC-ceEEEEEecCCChh-----hhHHHhcCCCCCCCCCeEEEEecccc
Q 000874 280 --IPQFTKERVRR-MKVLIVLDDVNKVG-----QLEGLIGGLDQYGPGSRIVVTTRDKG 330 (1243)
Q Consensus 280 --~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIIiTTR~~~ 330 (1243)
..+..++.+.. +-=|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 11233444444 34599999984322 23344444444456779999999763
No 422
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.17 E-value=1.6 Score=49.53 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhH-HHHHHHHHHHhc
Q 000874 209 TVQIVGIWGMGGIGKT-TLATAIFNQFSS 236 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKT-tLA~~v~~~~~~ 236 (1243)
.+..+.++|..|.||| |||+++.....+
T Consensus 178 P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~ 206 (461)
T KOG3928|consen 178 PVKRFVLDGEPGTGKSIALAQAVHYAADQ 206 (461)
T ss_pred cceEEEEeCCCCCchhhHHHHHHHHHhcC
Confidence 4566789999999999 688877664433
No 423
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.14 E-value=0.097 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
+|.|.|++|+||||+|+.+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999886
No 424
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.12 E-value=0.19 Score=54.87 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=52.2
Q ss_pred eEEEEEEecCCchhHHHH-HHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh--hhccccc---ccC------
Q 000874 210 VQIVGIWGMGGIGKTTLA-TAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST--ILSEKLE---VAG------ 277 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~~~~---~~~------ 277 (1243)
-..++|.|..|+|||+|| ..+.++. +-+.++.+..+++.. ..+.++.+.+... +.....- .+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 346899999999999996 5565543 234554444444322 3455666666543 1111100 011
Q ss_pred ------CCccHHHHHhhcCceEEEEEecCCChhh-hHHH
Q 000874 278 ------PNIPQFTKERVRRMKVLIVLDDVNKVGQ-LEGL 309 (1243)
Q Consensus 278 ------~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~~~l 309 (1243)
..+.+++++ +++.+|+|+||+-...+ +.++
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 112233433 58899999999966543 4443
No 425
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.07 E-value=0.17 Score=55.81 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEEee
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSD 246 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 246 (1243)
++|+|+|.+|+|||||+..+...++.+. .++.+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 5899999999999999999999988886 5666643
No 426
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.12 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.3
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765444
No 427
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.03 E-value=0.45 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=21.2
Q ss_pred EEEEEEecCCchhHHHHHHHHHH
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
++++|.|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999999764
No 428
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.01 E-value=0.23 Score=56.33 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=54.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
....+.|.|..|.||||+++++...+.... ..+.+.+..+......+...+ . ..............+.++..|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~--~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----F--YSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----E--ecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987654432 334443322211110000000 0 000000111223345677788
Q ss_pred cCceEEEEEecCCChhhhHHHh
Q 000874 289 RRMKVLIVLDDVNKVGQLEGLI 310 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~~~~~~l~ 310 (1243)
+...=.+|+|.+...+.++.+.
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIR 237 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHH
Confidence 8888899999999877665443
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.99 E-value=0.23 Score=60.19 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=39.7
Q ss_pred hhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 193 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.-+.++.++|..+- ..-.++.|.|.+|+||||||.++......+=+.++|+.
T Consensus 247 tGi~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34566777776544 55678999999999999999999887766656677764
No 430
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.57 Score=56.65 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=85.8
Q ss_pred CCCCcccchhhHHhHHHhhccCCC---------CCeEEEEEEecCCchhHHHHHHHHHHHhcccCc---eEEEeeccccc
Q 000874 184 SSNGLVGLNSRIEQIKPFLCMDLS---------DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG---RCFMSDVRRNS 251 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~ 251 (1243)
...+.-|.|...+++.+.+..-.+ .-++=|..+|++|.|||.||++++....--|-. .-|+...-.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG-- 225 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG-- 225 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC--
Confidence 445678888877776665543211 224558999999999999999999864433311 111100000
Q ss_pred cCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCCh---------------h-hhHHHhcCCCC
Q 000874 252 ETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKV---------------G-QLEGLIGGLDQ 315 (1243)
Q Consensus 252 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---------------~-~~~~l~~~~~~ 315 (1243)
-+. ....+...+..+.-++.+++|.++.. + .+.+++...+.
T Consensus 226 ---vGA--------------------sRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 226 ---VGA--------------------SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ---CCc--------------------HHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 011 11112234444555788999876432 1 25566666666
Q ss_pred CCCCCeEE-E-Eecccchh-----cccCCCcceEEecCCCCHHHHHHHHHHhhcC
Q 000874 316 YGPGSRIV-V-TTRDKGVL-----EKFGVEEEKIYGVNGLEFDEAFELFCNFAFE 363 (1243)
Q Consensus 316 ~~~gsrII-i-TTR~~~v~-----~~~~~~~~~~~~v~~L~~~ea~~Lf~~~af~ 363 (1243)
++...-|| + .|-..+|+ ..-..+ ..+.|+..+-....+.+.-|+-.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFD--RqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFD--RQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcc--eeeecCCcchhhHHHHHHHHhhc
Confidence 66333233 3 33333343 222344 66777777777777888777643
No 431
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.95 E-value=0.22 Score=55.97 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCCCcccchhhHHh---HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 184 SSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 184 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
..+++||.....+. +.+++.... -.-|.|-+.|++|.|||+||.+++..+....+++...
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 45789999877665 455555543 3468899999999999999999999998877765543
No 432
>PLN02796 D-glycerate 3-kinase
Probab=91.91 E-value=0.72 Score=52.14 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=25.6
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
...-+|||.|..|.||||||+.+...+...
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 356789999999999999999999876543
No 433
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.86 E-value=0.24 Score=57.08 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=36.9
Q ss_pred CcccchhhHHhHHHhhcc---------CC--CCCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 187 GLVGLNSRIEQIKPFLCM---------DL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~---------~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
.++|.+..++.+...+.. .. ....+-|.++|+.|+||||||+.+...+...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 578888877777665532 00 0123678999999999999999999876543
No 434
>PRK08149 ATP synthase SpaL; Validated
Probab=91.85 E-value=0.2 Score=58.53 Aligned_cols=88 Identities=16% Similarity=0.284 Sum_probs=50.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhcccccc-----cC------
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEV-----AG------ 277 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~-----~~------ 277 (1243)
.-..++|.|..|+|||||++.++.... -+..++. .+. .....+.++.+..+.......... +.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g-~Ig---~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE--ADVFVIG-LIG---ERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC--CCeEEEE-EEe---eCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 446789999999999999998886432 1222222 222 222556666666655422111110 11
Q ss_pred ------CCccHHHHHhhcCceEEEEEecCCChh
Q 000874 278 ------PNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 278 ------~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
..+.+++++ ++|++||++||+-...
T Consensus 224 ~a~~~a~tiAE~fr~--~G~~Vll~~DslTr~A 254 (428)
T PRK08149 224 NAALVATTVAEYFRD--QGKRVVLFIDSMTRYA 254 (428)
T ss_pred hHHHHHHHHHHHHHH--cCCCEEEEccchHHHH
Confidence 111233333 5899999999995543
No 435
>PRK13768 GTPase; Provisional
Probab=91.85 E-value=0.2 Score=55.01 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=26.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
..++.|.|+||+||||++..+....+.+-..++.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 35789999999999999999988765543333333
No 436
>PRK13975 thymidylate kinase; Provisional
Probab=91.83 E-value=0.14 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 437
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.83 E-value=0.67 Score=53.35 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
...-+|||.|..|.|||||++.+...++.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~ 238 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRV 238 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45689999999999999999999765543
No 438
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.82 E-value=0.11 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=18.7
Q ss_pred EEEEEecCCchhHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIF 231 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~ 231 (1243)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 439
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=91.81 E-value=0.84 Score=51.29 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=37.9
Q ss_pred hhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 193 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.-...|...|..+.-..-+++-|+|..|+||||||..+....+..-..++|++
T Consensus 36 TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 36 TGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp -S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 33455666665332244679999999999999999999888776766777875
No 440
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.80 E-value=0.14 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHHHHH
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+-|.++|+.|+|||++++....+.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 456899999999999999987654
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.79 E-value=0.13 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.+.|.|+|+.|.||||+|+.+..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 442
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.78 E-value=0.18 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999987765
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.77 E-value=0.13 Score=53.62 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=29.6
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
.|+|.|+|+.|+|||||++++..+...+|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999988888544443
No 444
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.75 E-value=0.067 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=16.8
Q ss_pred CCcEEEeccCCCCCcchhhcC
Q 000874 860 SLKFLYISDCAVTEIPQDIAC 880 (1243)
Q Consensus 860 ~L~~L~Ls~~~l~~lp~~l~~ 880 (1243)
+|++|+|++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578899999988888877654
No 445
>PRK14530 adenylate kinase; Provisional
Probab=91.74 E-value=0.13 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.|.|+|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 446
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.70 E-value=0.15 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 447
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.18 Score=51.08 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=63.4
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccccc-CCCccHHHHHhh
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVA-GPNIPQFTKERV 288 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~-~~~~~~~l~~~L 288 (1243)
-.+++|.|..|.|||||++.+...+. ...+.+++....- .. .........+ .-- .+.+ +....-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~--~~-~~~~~~~~~i----~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI--AK-LPLEELRRRI----GYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc--cc-CCHHHHHhce----EEE-eeCCHHHHHHHHHHHHH
Confidence 36899999999999999999987543 3456666542110 00 0111111110 000 0011 111112344555
Q ss_pred cCceEEEEEecCCCh---hh---hHHHhcCCCCCCCCCeEEEEecccchhcccCCCcceEEec
Q 000874 289 RRMKVLIVLDDVNKV---GQ---LEGLIGGLDQYGPGSRIVVTTRDKGVLEKFGVEEEKIYGV 345 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~---~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~v 345 (1243)
-...=++++|+.... .. +..+...+. ..+..+|++|-+....... .+ +++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d--~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-AD--RVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CC--EEEEE
Confidence 566788999987432 22 222222222 2256788888877765553 23 45544
No 448
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.66 E-value=0.25 Score=54.53 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.6
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..-.++.|.|.+|.||||+|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999998765444445677775
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.61 E-value=0.23 Score=57.24 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=54.7
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccC--c-eEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFE--G-RCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKE 286 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 286 (1243)
-..|.|+|+.|.||||+++++...+....+ . ++.+.+--+ .....+.... ..........+.......++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~~-~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETIS-ASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----Eecccccccc-ceeeeeeccccccCHHHHHHH
Confidence 478999999999999999999987754433 1 222221111 1111111000 000011111112234466888
Q ss_pred hhcCceEEEEEecCCChhhhHHHh
Q 000874 287 RVRRMKVLIVLDDVNKVGQLEGLI 310 (1243)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1243)
.|+..+-.+++..+.+.+..+..+
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 889899999999998888765443
No 450
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.61 E-value=0.39 Score=54.08 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=53.2
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhccc--CceEEEeeccccccCCCChHHHHHHHHHhhhcccccccCCCccHHHHHhh
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQFTKERV 288 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 288 (1243)
+.+.|.|..|.||||+++++...+.... +.++-+.+..+..-...+... +.. ........+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~---~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRT---SDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEe---cCCCCCHHHHHHHHh
Confidence 4577999999999999999998876532 233333322221100000000 000 001114446688888
Q ss_pred cCceEEEEEecCCChhhhHHH
Q 000874 289 RRMKVLIVLDDVNKVGQLEGL 309 (1243)
Q Consensus 289 ~~kr~LlVLDdv~~~~~~~~l 309 (1243)
+...=.||+..+.+.+.++.+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 888889999999988876654
No 451
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.23 Score=51.67 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=39.0
Q ss_pred CCcccchhhHHhHHHhhccC----------CCCCeEEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 186 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
.++=|.|-..+++.+..... .-+..|=|.++|++|.|||.||++|++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 45667887777777655321 115567789999999999999999999755444
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=91.52 E-value=0.25 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
....+|+|.|.+|.||||+|+++...+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999999976643
No 453
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.49 E-value=0.42 Score=49.52 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhc---ccC-ceEEEeecc-ccccCCCChHHHHHHHHHhhhcccccccCCCccHH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSS---EFE-GRCFMSDVR-RNSETGGGLEHLQKQMLSTILSEKLEVAGPNIPQF 283 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~F~-~~~~~~~~~-~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~ 283 (1243)
+..-..|.|++|+||||+.+.+++-++. +|- ..+-+.+-+ +......+..+.....--+...... ..+.+...
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp--k~~gmmma 213 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP--KAEGMMMA 213 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch--HHHHHHHH
Confidence 3444678999999999999999885543 343 222222211 1111101111111111111111111 11111112
Q ss_pred HHHhhcCceEEEEEecCCChhhhHHHhcCCCCCCCCCeEEEEec
Q 000874 284 TKERVRRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTR 327 (1243)
Q Consensus 284 l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR 327 (1243)
++ ...+=++|.|.+...++..++... ...|-++|.|.-
T Consensus 214 Ir---sm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaH 251 (308)
T COG3854 214 IR---SMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAH 251 (308)
T ss_pred HH---hcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeec
Confidence 22 234668999999888776655544 246777766643
No 454
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.45 E-value=0.59 Score=51.39 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 198 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 198 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
+..+|..+- ..-+++=|+|+.|.||||+|-+++-..+..-..++|++
T Consensus 49 LD~~LGGGl-~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGL-PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCc-ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 444555332 67789999999999999999998887777777888986
No 455
>PRK14529 adenylate kinase; Provisional
Probab=91.44 E-value=0.53 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHh
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
|.|.|++|+||||+|+.++.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 77899999999999999998764
No 456
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.40 E-value=0.15 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEecCCchhHHHHHHHHHH
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
.|.|.|.+|.||||+|+.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999997
No 457
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.38 E-value=0.18 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
.++|.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887765
No 458
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.37 E-value=0.29 Score=48.81 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
....+|-+.|..|.||||||.+++.++..+--.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4567999999999999999999999887664444333
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.35 E-value=0.18 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=22.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
.|.++|++|+||||+|+++.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877544
No 460
>PRK14526 adenylate kinase; Provisional
Probab=91.33 E-value=0.27 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|+|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 461
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.31 E-value=0.42 Score=56.38 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=51.2
Q ss_pred eEEEEEEecCCchhHHHHH-HHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh--hhcccccc-----------
Q 000874 210 VQIVGIWGMGGIGKTTLAT-AIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST--ILSEKLEV----------- 275 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~~~~~----------- 275 (1243)
-..++|.|-.|+||||||. .+.++- .-+..|.+..+++.. ..+.++.+.+... +...-.-.
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~---rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQKA---SSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCc---hHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 3568999999999999965 455542 335554444444322 4455666666544 21111100
Q ss_pred ----cCCCccHHHHHhhcCceEEEEEecCCChh
Q 000874 276 ----AGPNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 276 ----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
.+..+.+++++ +++++|+|+||+-...
T Consensus 216 ~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 216 LAPYTGAALAEYFMY--RGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHHhhHHHHHHH--cCCCEEEEEcChhHHH
Confidence 11223344554 5899999999996543
No 462
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.27 E-value=2.8 Score=50.11 Aligned_cols=72 Identities=25% Similarity=0.291 Sum_probs=47.1
Q ss_pred CcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHh-cccCceEEEeeccccccCCCChHHHHHHHH
Q 000874 187 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFMSDVRRNSETGGGLEHLQKQML 265 (1243)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 265 (1243)
...|...-...|.+++. +- ..-.++.|-|.+|+|||++|..++..+. .+-..++|++. . ....++...++
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~-~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl------E-m~~~~l~~Rl~ 243 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GL-VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL------E-MSAEQLGERLL 243 (421)
T ss_pred CCcceeCCChhHHHHhc-CC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------C-CCHHHHHHHHH
Confidence 35566666667776664 22 3456888999999999999999987654 33334555531 1 34556666666
Q ss_pred Hh
Q 000874 266 ST 267 (1243)
Q Consensus 266 ~~ 267 (1243)
+.
T Consensus 244 ~~ 245 (421)
T TIGR03600 244 AS 245 (421)
T ss_pred HH
Confidence 55
No 463
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.27 E-value=0.2 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.1
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
|+|+|+|-||+||||+|..++..+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578999999999999999988866554
No 464
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.26 E-value=0.37 Score=53.23 Aligned_cols=58 Identities=26% Similarity=0.218 Sum_probs=44.4
Q ss_pred CCCCCcccchhhHHh---HHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCce
Q 000874 183 DSSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGR 241 (1243)
Q Consensus 183 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 241 (1243)
...+.+||-....+. +.+++..+. -.-+.|.|+|++|.|||+||-.+.+.+-..-+++
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk-~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGK-MAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCc-ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 346789998766655 566666554 4568899999999999999999999887664443
No 465
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.26 E-value=0.28 Score=46.55 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=25.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 213 VGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
|.+.|.||+||||++..++..+..+-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78999999999999999998876543334434
No 466
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.23 E-value=0.3 Score=57.62 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=35.0
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhccc-CceEEEeeccccccCCCChHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEF-EGRCFMSDVRRNSETGGGLEHLQKQMLS 266 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 266 (1243)
-..++|.|-.|+|||||+..+...+.... +.++|. .+++.. ..+.++.+.++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~ 214 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKE 214 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHh
Confidence 45689999999999999999887644322 444444 444322 345666666655
No 467
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.23 E-value=0.19 Score=54.46 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEecCCchhHHHHHHHHHHHhcccCceEE
Q 000874 215 IWGMGGIGKTTLATAIFNQFSSEFEGRCF 243 (1243)
Q Consensus 215 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 243 (1243)
|+||+|+||||+++.+.+.+..+-..++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceE
Confidence 68999999999999999977655333333
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.22 E-value=0.2 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999976
No 469
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=91.21 E-value=0.43 Score=56.58 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=49.8
Q ss_pred eEEEEEEecCCchhHHHH-HHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHh--hhcccccc-----------
Q 000874 210 VQIVGIWGMGGIGKTTLA-TAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLST--ILSEKLEV----------- 275 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~~~~~----------- 275 (1243)
-..++|.|-.|+|||||| ..+.++. .-+..|.+..+++. ...+.++.+.+... +...-.-.
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~IGeR---~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCAIGQR---ASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEEeccC---cHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 456899999999999997 4677753 33442333334332 13455666666554 11111000
Q ss_pred ----cCCCccHHHHHhhcCceEEEEEecCCChh
Q 000874 276 ----AGPNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 276 ----~~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
.+..+.+++++ +++++|||+||+-...
T Consensus 237 ~ap~~a~aiAEyfrd--~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 237 IAPYAATSIGEHFME--QGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEEcChhHHH
Confidence 11122334443 5899999999995543
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.18 E-value=0.13 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEEEEecCCchhHHHHHHHHHHH
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998854
No 471
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.16 E-value=0.13 Score=30.18 Aligned_cols=12 Identities=50% Similarity=0.697 Sum_probs=3.4
Q ss_pred CCEEeCcCCCCc
Q 000874 884 LTTLNLSGNNFE 895 (1243)
Q Consensus 884 L~~L~Ls~n~l~ 895 (1243)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333333333333
No 472
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.10 E-value=0.077 Score=55.50 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
.--|.|+|.+|+|||||++.+..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 34577999999999999999876
No 473
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.77 Score=47.99 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHhhcCceEEEEEecCCChhhhHHHh---cCCCC-CCCCCeEEEEecccchhcccCCC
Q 000874 282 QFTKERVRRMKVLIVLDDVNKVGQLEGLI---GGLDQ-YGPGSRIVVTTRDKGVLEKFGVE 338 (1243)
Q Consensus 282 ~~l~~~L~~kr~LlVLDdv~~~~~~~~l~---~~~~~-~~~gsrIIiTTR~~~v~~~~~~~ 338 (1243)
..+.+.+--++-+.|||.-++--+.+++. ..... ..+|+-++|.|-.+.++.....+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 44555555678899999887655443332 11111 14577788888888888877655
No 474
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.02 E-value=0.25 Score=44.94 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFSS 236 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~~ 236 (1243)
++.+.|.+|+||||+|..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998765
No 475
>PTZ00494 tuzin-like protein; Provisional
Probab=91.01 E-value=3.5 Score=47.40 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCCCCCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHH
Q 000874 182 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQ 261 (1243)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 261 (1243)
+.....+|.|+.+-.-+...|..-+...+|++++.|.-|.||++|.+....+ .-...+|++ + .+-++..
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-V-------Rg~EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-V-------GGTEDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-e-------cCCcchH
Confidence 4456789999999888888887655478999999999999999999988764 224456664 3 3334556
Q ss_pred HHHHHhhhcccccccCCCccHHHHH-------hhcCceEEEEEe--cCCChhh-hHHHhcCCCCCCCCCeEEEEecccch
Q 000874 262 KQMLSTILSEKLEVAGPNIPQFTKE-------RVRRMKVLIVLD--DVNKVGQ-LEGLIGGLDQYGPGSRIVVTTRDKGV 331 (1243)
Q Consensus 262 ~~ll~~l~~~~~~~~~~~~~~~l~~-------~L~~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gsrIIiTTR~~~v 331 (1243)
+.+.+.|+-...+.-+. +.+++.+ ...++.=+||+- +=.+... +.+.. .+.....-+.|++----+.+
T Consensus 436 rsVVKALgV~nve~CGD-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGD-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHhCCCChhhhcc-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 66677777666554322 2233332 234454556653 2122211 11111 11112345667764433332
Q ss_pred hcc-cCCCcceEEecCCCCHHHHHHHHHHh
Q 000874 332 LEK-FGVEEEKIYGVNGLEFDEAFELFCNF 360 (1243)
Q Consensus 332 ~~~-~~~~~~~~~~v~~L~~~ea~~Lf~~~ 360 (1243)
... .....-..|-++.++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 111 11122257999999999999886554
No 476
>PLN02200 adenylate kinase family protein
Probab=91.00 E-value=0.19 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
....+|.|.|++|+||||+|+.++.++
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 477
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.00 E-value=0.28 Score=49.16 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.0
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
.++++|+|..|+|||||..++..+++.+--.++.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 478999999999999999999998887755555553
No 478
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.99 E-value=0.16 Score=53.38 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHHH
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
.--++||+|..|.||||||+.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=90.98 E-value=0.33 Score=54.75 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhh--cccccc---cC------
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTIL--SEKLEV---AG------ 277 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~--~~~~~~---~~------ 277 (1243)
.-..++|.|..|.|||||++.+...... +..++. .+++ ....+..+.+..+..-. ....-. +.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~-~iGe---r~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIA-LIGE---RGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEE-EEec---CCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 3457899999999999999988875432 222222 2222 11445555555444311 100000 11
Q ss_pred ------CCccHHHHHhhcCceEEEEEecCCChh
Q 000874 278 ------PNIPQFTKERVRRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 278 ------~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1243)
..+.+++++ ++|.+|+++||+-...
T Consensus 142 ~~~~~a~~~AEyfr~--~g~~Vll~~Dsltr~a 172 (326)
T cd01136 142 KAAYTATAIAEYFRD--QGKDVLLLMDSLTRFA 172 (326)
T ss_pred HHHHHHHHHHHHHHH--cCCCeEEEeccchHHH
Confidence 112233333 5899999999985543
No 480
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.96 E-value=0.2 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
...+.|.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56789999999999999999999754
No 481
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.95 E-value=0.3 Score=49.72 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=32.2
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEee
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSD 246 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 246 (1243)
+..|+|-|+.|+|||||..+....++++|...+.-.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 5899999999999999999999999999887665543
No 482
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.94 E-value=0.17 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
.|.|+|+.|.||||+|+.+..++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 483
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.93 E-value=0.24 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.91 E-value=0.58 Score=51.86 Aligned_cols=38 Identities=29% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEe
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMS 245 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 245 (1243)
..-+++.|.|.+|+|||++|.++..+...+.+.++|+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56789999999999999999999998888888899985
No 485
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.90 E-value=2.8 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
-..|+|+|+.|+||+||.+.+.-+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998764
No 486
>PRK04182 cytidylate kinase; Provisional
Probab=90.89 E-value=0.17 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 487
>PLN02318 phosphoribulokinase/uridine kinase
Probab=90.89 E-value=0.23 Score=59.45 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHH
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
+++.+|||.|..|.||||||+.+...+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 568899999999999999999998764
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.88 E-value=0.24 Score=55.86 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=25.9
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCceEEE
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFM 244 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 244 (1243)
|++.+.|-||+||||+|.+.+-....+=..+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6889999999999999998888766553333433
No 489
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.88 E-value=0.54 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHHH
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFN 232 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~ 232 (1243)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999875
No 490
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.87 E-value=0.31 Score=49.11 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=24.8
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhccc
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEF 238 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 238 (1243)
++++|+|..|+|||||+..+...+..+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999876553
No 491
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.85 E-value=0.37 Score=61.43 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCh---hhhH----HHhcCCCCCCCCCeEEEEecccchhcccCCCc-ceEEecCCCCHHHHHHHHHHhh
Q 000874 290 RMKVLIVLDDVNKV---GQLE----GLIGGLDQYGPGSRIVVTTRDKGVLEKFGVEE-EKIYGVNGLEFDEAFELFCNFA 361 (1243)
Q Consensus 290 ~kr~LlVLDdv~~~---~~~~----~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~-~~~~~v~~L~~~ea~~Lf~~~a 361 (1243)
.++-|+++|..... ..-. .++..+. ..|+.+|+||-+..+........ ...+.+. ++. +... |..+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Yk- 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYK- 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEE-
Confidence 47899999998542 2222 2222222 35789999999887643321110 0111111 111 1111 1111
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhhCCCCHHHHHHHHHHHhh
Q 000874 362 FEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLDDLNR 413 (1243)
Q Consensus 362 f~~~~~~~~~~~l~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~ 413 (1243)
+....+.. .-|-+|++++ |+|-.+..-|..+.+....+++..++++..
T Consensus 475 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 475 LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11122221 2356676665 889888888877766555566666665543
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.82 E-value=0.15 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 000874 213 VGIWGMGGIGKTTLATAIFNQF 234 (1243)
Q Consensus 213 v~I~G~gGiGKTtLA~~v~~~~ 234 (1243)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 493
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.80 E-value=0.5 Score=53.60 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=26.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
....+|+|.|.+|+|||||+..+...++..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 567899999999999999999998877654
No 494
>PRK15115 response regulator GlrR; Provisional
Probab=90.79 E-value=9.1 Score=46.18 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCcccchhhHHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHH
Q 000874 186 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 233 (1243)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 233 (1243)
..++|....+.++.+....-. ..-..|.|.|.+|.|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 357888777766655443322 22345679999999999999999874
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=90.76 E-value=0.82 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 000874 212 IVGIWGMGGIGKTTLATAIFNQFS 235 (1243)
Q Consensus 212 vv~I~G~gGiGKTtLA~~v~~~~~ 235 (1243)
+..|+|+||+||||||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987654
No 496
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=90.76 E-value=0.41 Score=56.06 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHHHHHhcccCceEEEeeccccccCCCChHHHHHHHHHhhhccccc--c---cC------
Q 000874 209 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFMSDVRRNSETGGGLEHLQKQMLSTILSEKLE--V---AG------ 277 (1243)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~---~~------ 277 (1243)
.-..++|.|..|+|||||++.+++.... +..++. .+++.. ..+.++.+..+.+-...... . +.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~-~iGER~---rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIG-LIGERG---REVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEE-EEecCc---HHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 4467899999999999999998875432 333433 333321 33445544443331111100 0 11
Q ss_pred ------CCccHHHHHhhcCceEEEEEecCCCh
Q 000874 278 ------PNIPQFTKERVRRMKVLIVLDDVNKV 303 (1243)
Q Consensus 278 ------~~~~~~l~~~L~~kr~LlVLDdv~~~ 303 (1243)
..+.+++++ +++++|+++||+-..
T Consensus 231 ~a~~~a~tiAEyfrd--~G~~Vll~~DslTr~ 260 (442)
T PRK08927 231 QAAYLTLAIAEYFRD--QGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHH--CCCcEEEEEeCcHHH
Confidence 112233333 589999999999544
No 497
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=4 Score=45.90 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHHHHHhcc
Q 000874 208 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 237 (1243)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 237 (1243)
....||-++|.-|+||||...++++.++.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkk 128 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKK 128 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhc
Confidence 567899999999999999877776655444
No 498
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=90.72 E-value=3.1 Score=46.66 Aligned_cols=168 Identities=8% Similarity=0.077 Sum_probs=90.9
Q ss_pred HHhHHHhhccCCCCCeEEEEEEecCCchhHHHHHHHHHHHhc--------c-cC-ceEEEeeccccccCCCChHHHHHHH
Q 000874 195 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--------E-FE-GRCFMSDVRRNSETGGGLEHLQKQM 264 (1243)
Q Consensus 195 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~l~~l~~~l 264 (1243)
++.+.+.+..+ .-..+.-++|..|.||+++|+++.+.+-. . .+ ...++... . .. -.+.++. ++
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-g--~~-i~vd~Ir-~l 77 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-D--KD-LSKSEFL-SA 77 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-C--Cc-CCHHHHH-HH
Confidence 34455555432 23466779999999999999999997621 1 11 11222100 0 11 2233332 22
Q ss_pred HHhhhcccccccCCCccHHHHHhhcCceEEEEEecCCChhh--hHHHhcCCCCCCCCCeEEEEec-ccchhcccCCCcce
Q 000874 265 LSTILSEKLEVAGPNIPQFTKERVRRMKVLIVLDDVNKVGQ--LEGLIGGLDQYGPGSRIVVTTR-DKGVLEKFGVEEEK 341 (1243)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR-~~~v~~~~~~~~~~ 341 (1243)
...+.-.. .-.+++=++|+|+++.... ...++..+....+.+.+|++|. ...+....... ..
T Consensus 78 ~~~~~~~~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR-c~ 142 (299)
T PRK07132 78 INKLYFSS--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR-CQ 142 (299)
T ss_pred HHHhccCC--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC-eE
Confidence 22211100 0014566788898876543 5556655555567777776654 34444332211 27
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 000874 342 IYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVL 392 (1243)
Q Consensus 342 ~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~~ 392 (1243)
++++.++++++..+.+.... .+ .+.+..++...+|.=-|+..+
T Consensus 143 ~~~f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EEECCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 89999999999988776541 11 123555666666632445443
No 499
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.72 E-value=0.31 Score=57.16 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=52.3
Q ss_pred eEEEEEEecCCchhHHHHHHHHHHHhc-ccCceEEEeeccccccCCCChHHHHHHHHHh-hhccccc-c---cCCCc---
Q 000874 210 VQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFMSDVRRNSETGGGLEHLQKQMLST-ILSEKLE-V---AGPNI--- 280 (1243)
Q Consensus 210 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~---~~~~~--- 280 (1243)
-..++|.|.+|+|||+|+..+...... +-+.++|. .+++. ...+.++.+++... ......- . +....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-EeccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 456899999999999999998876542 23455554 34332 24455666665543 1111111 0 11111
Q ss_pred -----cHHHHHhh---cCceEEEEEecCCChh
Q 000874 281 -----PQFTKERV---RRMKVLIVLDDVNKVG 304 (1243)
Q Consensus 281 -----~~~l~~~L---~~kr~LlVLDdv~~~~ 304 (1243)
.-.+.+++ +++++|+++||+-...
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 11234444 4689999999995543
No 500
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.71 E-value=0.19 Score=51.05 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.0
Q ss_pred EEEEEEecCCchhHHHHHHHHHHHhcccCce
Q 000874 211 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGR 241 (1243)
Q Consensus 211 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 241 (1243)
+.|-+.|.+|+||||+|++++..+++.-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4678899999999999999999766554333
Done!