Query 000874
Match_columns 1243
No_of_seqs 721 out of 6596
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 16:49:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000874.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_643-646//hhsearch_pdb/000874hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 1.0 1 1 367.1 12.0 175 1-182 1-175 (176)
2 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 357.1 24.4 297 189-503 131-473 (549)
3 3ozi_A L6TR; plant TIR domain, 1.0 1 1 350.2 12.9 169 5-177 32-202 (204)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 350.1 21.0 306 180-501 118-452 (1249)
5 3rgz_A Protein brassinosteroid 1.0 1 1 335.7 32.2 88 592-680 200-289 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 330.7 24.6 416 550-990 95-530 (768)
7 1vt4_I APAF-1 related killer D 1.0 1 1 315.1 14.4 299 185-522 127-459 (1221)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 307.0 32.7 453 534-1009 36-560 (606)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 304.2 23.1 356 604-968 437-845 (876)
10 4eco_A Uncharacterized protein 1.0 1 1 304.0 20.6 352 603-963 194-600 (636)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=367.13 Aligned_cols=175 Identities=43% Similarity=0.769 Sum_probs=168.5
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHH
Q ss_conf 99999997449972423546674289999999561791015218214599863289999864033167862457656055
Q 000874 1 MASSSSCNYDVFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKW 80 (1243)
Q Consensus 1 ~~s~~~~~~dvf~s~~~~d~r~~f~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~w 80 (1243)
|+||++|+|||||||||+|||++|++||+.+| +++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|.|
T Consensus 1 msss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L-~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~W 79 (176)
T 3jrn_A 1 MSSHTATKYDVFLSFRGHDTRHNFISFLYKEL-VRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSW 79 (176)
T ss_dssp ------CCEEEEEEECHHHHTTTHHHHHHHHH-HHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHH
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHH
T ss_conf 99988988849997867466748999999999-97899899876423577855799999999688899982488677716
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 49999999994731998899699871731010145762247999998512685899999999998214129986557644
Q 000874 81 CLNELVKILECKNTNGQIVIPVFYNVSPSDVRHQTGIFGDGFDKLEQQFKEKPEIVQKWRYALRETSHLAGHESTKFRHD 160 (1243)
Q Consensus 81 cl~EL~~i~~~~~~~~~~v~Pvfy~v~ps~vr~~~~~~~~a~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~~~~e 160 (1243)
|++||++|++|++.++++|+||||+|+|++||+|+|+||+||++|+++ .+.+++++|+.||+++|+++|| +. .++|
T Consensus 80 Cl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~-~~-~~~e 155 (176)
T 3jrn_A 80 CLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGD-CS-GDDD 155 (176)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCE-EC-CSCH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCE-EC-CCCH
T ss_conf 899999877654158877999984487888353157099999999820--4789999999999997466635-25-8879
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999999999999721014578
Q 000874 161 AQLVNKIVEDILKKLEKITVST 182 (1243)
Q Consensus 161 ~~~i~~i~~~v~~~l~~~~~~~ 182 (1243)
+++|++||++|.+++++ +++
T Consensus 156 ~~~i~~Iv~~v~~~l~~--~~~ 175 (176)
T 3jrn_A 156 SKLVDKIANEISNKKTI--YAT 175 (176)
T ss_dssp HHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHHHHCC--CCC
T ss_conf 99999999999998667--898
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=357.13 Aligned_cols=297 Identities=14% Similarity=0.126 Sum_probs=234.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHH----HHHCCCCCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 23224698688762157899709999991388536799999999----87315672399761400016899938999999
Q 000874 189 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFN----QFSSEFEGRCFMSDVRRNSETGGGLEHLQKQM 264 (1243)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 264 (1243)
+||+.++++|.++|..+.+.++++|+|+|||||||||||+++|+ +++.+|++++|+. ++.... .++..++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCC--CCHHHHHHHH
T ss_conf 7841799999998725157896289998699998899999999840698746699579999-789878--7999999999
Q ss_pred HHHHHCCCC--CCCC-CC-----CCHHHHHHHCCC-EEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHCCC
Q ss_conf 986602564--3359-99-----508899865286-28999806998344678742989779997599993353100002
Q 000874 265 LSTILSEKL--EVAG-PN-----IPQFTKERVRRM-KVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDKGVLEKF 335 (1243)
Q Consensus 265 l~~l~~~~~--~~~~-~~-----~~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 335 (1243)
+.++..... .... .. +...+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHC
T ss_conf 999853755345555331469999999999976898489999799971441-5432-----6998899974977999970
Q ss_pred C-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH-HHH
Q ss_conf 8-88532896589998789999977312989999138999999999817993468998643079998799999988-752
Q 000874 336 G-VEEEKIYGVNGLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENVLDD-LNR 413 (1243)
Q Consensus 336 ~-~~~~~~~~v~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~lg~~L~~~~~~~w~~~l~~-l~~ 413 (1243)
+ .. .+|+|++|+.++|++||..+||+... .+.+.+++.+|+++|+|+|||++++|+.++.+. .+|...+.. +..
T Consensus 282 ~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 282 SQTC--EFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLES 357 (549)
T ss_dssp CSCE--EEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHC
T ss_conf 8897--38989998989999999987448998-556899999999995998399999999844344-8999875787613
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHH-----------EECCCCCCCCHHHHHHHHHHC----------------CCC
Q ss_conf 05742245685875011367154453540-----------011355887988999998210----------------000
Q 000874 414 ICESEIHDIYDILKISFNELIPREKSMFL-----------DIACFFEGEDKDILMRILDDS----------------ESY 466 (1243)
Q Consensus 414 ~~~~~i~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~l~~~----------------~~~ 466 (1243)
.....+ ..++.+||+.|+.+.|.||+ +||+||+++.++ ..+|.+. ...
T Consensus 358 ~~~~~i---~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 358 RGLVGV---ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp HCSSTT---CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH
T ss_pred CCHHHH---HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHH
T ss_conf 647778---9897516202267999997526522336743235608997666--53311013550026778999999999
Q ss_pred HHHHCCCCCCEEEC----CCEEECCHHHHHHHHHHHHCCCC
Q ss_conf 00000135425881----88386014699999998620244
Q 000874 467 ALGVLIDKSLITIS----HNCLQMHDLLQEMGRQIVRQESQ 503 (1243)
Q Consensus 467 ~l~~L~~~~Li~~~----~~~~~mHdli~~~~~~i~~~e~~ 503 (1243)
+++.|+++||++.. ..+|.|||++|+++++++++++.
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99999875883671479804999676999999999889899
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=1.00 E-value=1 Score=350.23 Aligned_cols=169 Identities=45% Similarity=0.762 Sum_probs=160.2
Q ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHH
Q ss_conf 99974499724235466742899999995617910152182145998632899998640331678624576560554999
Q 000874 5 SSCNYDVFLSFRGVDTRASFTCHLYDSLFERKKIRTFIDDEELRQGDAISPVLLNAIQGSKISLIIFSKDYASSKWCLNE 84 (1243)
Q Consensus 5 ~~~~~dvf~s~~~~d~r~~f~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~wcl~E 84 (1243)
+.++|||||||||+|+|.+|++||+.+| +++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|.||++|
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL-~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSL-RRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHH-HHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHH
T ss_conf 8857749996536477787999999999-978995898487667877047999999984847668877553257478999
Q ss_pred HHHHHHHHHC-CCCEEEEEEEEECCCHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHH
Q ss_conf 9999994731-998899699871731010145762247999998512685899999999998214129986557-64489
Q 000874 85 LVKILECKNT-NGQIVIPVFYNVSPSDVRHQTGIFGDGFDKLEQQFKEKPEIVQKWRYALRETSHLAGHESTKF-RHDAQ 162 (1243)
Q Consensus 85 L~~i~~~~~~-~~~~v~Pvfy~v~ps~vr~~~~~~~~a~~~~~~~~~~~~~~v~~w~~aL~~~~~~~g~~~~~~-~~e~~ 162 (1243)
|++|++|+++ ++++|+||||+|+|++||+|+|.||+||++|++++ ..+++++|+.||+++|+++|| +..+ ..|++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~-~~~~~~~e~~ 187 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGW-HIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBE-EECTTSCHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHH--CHHHHHHHHHHHHHHHCCCCE-ECCCCCCHHH
T ss_conf 9999998875177035779960688997741241999999999861--788999999999998466756-3289998999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999997210
Q 000874 163 LVNKIVEDILKKLEK 177 (1243)
Q Consensus 163 ~i~~i~~~v~~~l~~ 177 (1243)
++++|+++|++++++
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999987334
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=350.09 Aligned_cols=306 Identities=21% Similarity=0.281 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH---HHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 578888984232246986887621578997099999913885367999999998---73156723997614000168999
Q 000874 180 VSTDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ---FSSEFEGRCFMSDVRRNSETGGG 256 (1243)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~ 256 (1243)
..|.....||||+.++++|.++|.... +++++|+|+||||+||||||+++|++ ....|...+||..+..... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 194 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SG 194 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCC--HH
T ss_conf 979998641257999999999986135-887779999189888889999986075678862788179999788572--67
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-C----CCCHHHHHHHCCC--EEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 389999999866025643359-9----9508899865286--28999806998344678742989779997599993353
Q 000874 257 LEHLQKQMLSTILSEKLEVAG-P----NIPQFTKERVRRM--KVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTRDK 329 (1243)
Q Consensus 257 l~~l~~~ll~~l~~~~~~~~~-~----~~~~~l~~~L~~k--~~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~ 329 (1243)
+......++..+......... . .+...++..+.++ |+||||||||+..+|+.+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCH
T ss_conf 999999999986553033347887778999999999735678789999567997788763-------6897899992778
Q ss_pred CHHCC-CCCCCCEEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 10000-2888532896589-998789999977312989999138999999999817993468998643079998799999
Q 000874 330 GVLEK-FGVEEEKIYGVNG-LEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLKRKSHWENV 407 (1243)
Q Consensus 330 ~v~~~-~~~~~~~~~~v~~-L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~lg~~L~~~~~~~w~~~ 407 (1243)
.++.. .+.. ..++++. |+.++|++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.+. ..|+..
T Consensus 268 ~~~~~~~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 268 SVTDSVMGPK--HVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp TTTTTCCSCB--CCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred HHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCC---HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHH
T ss_conf 9987634884--3798258888788999999865798---134838899999984997799999999862480-579999
Q ss_pred HHHHHHCCCCC--------HHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCH--HHHHHHHHH---CCCCHHHHCCCC
Q ss_conf 98875205742--------24568587501136715445354001135588798--899999821---000000000135
Q 000874 408 LDDLNRICESE--------IHDIYDILKISFNELIPREKSMFLDIACFFEGEDK--DILMRILDD---SESYALGVLIDK 474 (1243)
Q Consensus 408 l~~l~~~~~~~--------i~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~l~~---~~~~~l~~L~~~ 474 (1243)
++++....... ...+..+|.+||+.|++++|.||++||+||++..+ +.+..+|.. .++..++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNK 421 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99986504430346556446779999998998679999999997281379975189999988589888999999999744
Q ss_pred CCEEEC-CC---EEECCHHHHHHHHHHHHCC
Q ss_conf 425881-88---3860146999999986202
Q 000874 475 SLITIS-HN---CLQMHDLLQEMGRQIVRQE 501 (1243)
Q Consensus 475 ~Li~~~-~~---~~~mHdli~~~~~~i~~~e 501 (1243)
||++.. ++ +++||+++|+++++...++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 6338963798118996689999987450678
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=335.67 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCCCCCCCC-CCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 88169981389999999987-6444330022243442-111111124655301468886643379988988761894458
Q 000874 592 KNLRYLHWYKYPLRTLPSNF-KPKNIVELSLRFSKVE-QIWEGKKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSN 669 (1243)
Q Consensus 592 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~s~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~ 669 (1243)
.+|++|++.++.+...++.+ .+++|++|+++++.+. .++..+..+++|+.|++++|......|.. .+++|++|++++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~ 278 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAE 278 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCC
T ss_conf 8689898928827887711126999998979488587816577744888898989888665716724-368789897917
Q ss_pred CCCCCCCCCCC
Q ss_conf 85787689754
Q 000874 670 CTNLVHVPASI 680 (1243)
Q Consensus 670 c~~l~~~p~~~ 680 (1243)
|.....+|..+
T Consensus 279 n~l~~~ip~~~ 289 (768)
T 3rgz_A 279 NKFTGEIPDFL 289 (768)
T ss_dssp SEEEESCCCCS
T ss_pred CCCCCCCCHHH
T ss_conf 85577258888
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=330.75 Aligned_cols=416 Identities=21% Similarity=0.226 Sum_probs=152.2
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHCCCCCEECCCCCCCCCCCCEEEEECCCCCC-CCCCC--CCCCCCCEECCCCCCC
Q ss_conf 11178866629983688533102210137850059977788888169981389999-99998--7644433002224344
Q 000874 550 AFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLR-TLPSN--FKPKNIVELSLRFSKV 626 (1243)
Q Consensus 550 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~--~~~~~L~~L~L~~s~i 626 (1243)
.|.++++|+.|++.+|.+.+.++. ...+..+ .+|++|++.+|.+. ..|.. ..+.+|++|+++++.+
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTT----------LTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGG----------GGGGGGC-TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred HHCCCCCCCEEECCCCCCCCCCCC----------HHHHHCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 324578899898989857870789----------6787278-89998989688267747977856388999898979835
Q ss_pred CCCCC-C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 21111-1---1124655301468886643379988988761894458857876897545998756555445623003657
Q 000874 627 EQIWE-G---KKKAFKLKSIDLSHSEHLIRIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFPQISGKITRLYLSQ 702 (1243)
Q Consensus 627 ~~l~~-~---~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~p~~~~~L~~L~~l~~~~~L~~L~L~~ 702 (1243)
..... . +..+++|+.|++++|......+ +..+++|++|++++|.....+|. ++.+++|+. |++++
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~---------L~Ls~ 232 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH---------LDISG 232 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE---------EECCS
T ss_pred CCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCE---------EECCC
T ss_conf 88587155664358988989897880346578-45478689898928827887711-126999998---------97948
Q ss_pred CCCC-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCC-CCCCEEECCCCCCC-CC
Q ss_conf 7565-555433468934199513686542032110266765523023544768672445327-86667423564763-23
Q 000874 703 SAIE-EVPSSIECLTDLVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEM-EHLKRIYLERTAIT-EL 779 (1243)
Q Consensus 703 ~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~l~~L~~L~Ls~c~~~~~~p~~l~~l-~~L~~L~L~~~~i~-~l 779 (1243)
+.++ .+|..+..+++|+.|++++|.....+|.. .+++|++|++++|.....+|..+... ++|+.|++++|.+. .+
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 8587816577744888898989888665716724--36878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCC-CCCCCCCCCC-CCCEEEECCCCCCCCCCHHHCC
Q ss_conf 831014667848961289888767976-699999858881488775-5792222898-8739980568777888810006
Q 000874 780 PSSFENLLGLEFLTVSGCSKLDKLPDN-IGNLKSLDFIAAVGSAIS-QLPSSVADSN-VLRMLFFCRCRRLLSLPRLLLS 856 (1243)
Q Consensus 780 p~~l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~-~l~~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~ 856 (1243)
|..+..+++|+.|++++|...+.+|.. +..+++|+.|++++|.+. .+|..+..++ +|+.|++++|.....+|. .+.
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~ 389 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLC 389 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCH-HHH
T ss_conf 3677558776677897885257379788724888878848478437623098986322771998627874787676-665
Q ss_pred C--CCCCCEEEECCCCCC-CCCHHHCCCCCCCEEECCCCCCC-CCCHHCCCCCCCCEEEECCCCCCCCCCC---CCCCCC
Q ss_conf 9--998859980168997-76401017998888967689884-3450001999998996258888875787---677775
Q 000874 857 G--LSSLKFLYISDCAVT-EIPQDIACLSSLTTLNLSGNNFE-SLPASIKQLSQLSSLYLKDCKMLQSLPE---LPLCLK 929 (1243)
Q Consensus 857 ~--l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~---l~~~L~ 929 (1243)
. +++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.....+|. ..++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCE
T ss_conf 33247761898977846542487775689879898958846685467774499889898978815471897882877732
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCC
Q ss_conf 8842068788855998201133442247897789998814441003455201379998642
Q 000874 930 YLDLRDCNTLRSLPELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRSI 990 (1243)
Q Consensus 930 ~L~l~~c~~l~~~~~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~L~~~~~~~~~ 990 (1243)
.|++++|.....+|..+..+++|+.+++++|.+...+|..+..+..+..++++.|.+.+.+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred EEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 9990199513758878816998998975399518968768856899998989789433748
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=315.10 Aligned_cols=299 Identities=18% Similarity=0.185 Sum_probs=218.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHH--HHHCCCCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 898423224698688762157899709999991388536799999999--873156723997614000168999389999
Q 000874 185 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFN--QFSSEFEGRCFMSDVRRNSETGGGLEHLQK 262 (1243)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 262 (1243)
.+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..+||..+++. .+...+..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~ 200 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLE 200 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHH
T ss_conf 787789289999999997435--897189997699966799999999714988748993899982899----99999999
Q ss_pred HHHHHHHCCCCC----CC--------CCCCCHHHHHHH---CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 999866025643----35--------999508899865---286289998069983446787429897799975999933
Q 000874 263 QMLSTILSEKLE----VA--------GPNIPQFTKERV---RRMKVLIVLDDVNKVGQLEGLIGGLDQYGPGSRIVVTTR 327 (1243)
Q Consensus 263 ~ll~~l~~~~~~----~~--------~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR 327 (1243)
.++..+...... .+ ...+...+++.| .++|+||||||||+.++|+.+ ++||+||||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTR 273 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH-------CCCEEEEEECC
T ss_conf 99999862272102200134679999999999999999850478879987186818999864-------79829999443
Q ss_pred CCCHHCCCCCCCCEEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--
Q ss_conf 5310000288853289658------99987899999773129899991389999999998179934689986430799--
Q 000874 328 DKGVLEKFGVEEEKIYGVN------GLEFDEAFELFCNFAFEENHCPEDLNWHSRRVVWYATSNPLVLKVLGSSLCLK-- 399 (1243)
Q Consensus 328 ~~~v~~~~~~~~~~~~~v~------~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~glPLal~~lg~~L~~~-- 399 (1243)
++.++..+... ..|+|+ .|+.+||++||+.+. +.. ..++..++ |+|+||||+++|+.|+++
T Consensus 274 d~~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHCCCC--EEEEECCCCCCCCCCHHHHHHHHHHHC-CCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCC
T ss_conf 73799866897--089946865568969999999999974-998-----89999999---69899999999999848899
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH-HHHHHEECCCCCCCCH--HHHHHHHHHC----CCCHHHHCC
Q ss_conf 98799999988752057422456858750113671544-5354001135588798--8999998210----000000001
Q 000874 400 RKSHWENVLDDLNRICESEIHDIYDILKISFNELIPRE-KSMFLDIACFFEGEDK--DILMRILDDS----ESYALGVLI 472 (1243)
Q Consensus 400 ~~~~w~~~l~~l~~~~~~~i~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~~~~~l~~~----~~~~l~~L~ 472 (1243)
+.++|+.. .. ..+..+|+.||+.|++++ |.||++||+||++..+ +.+..+|... +..+++.|+
T Consensus 343 s~eeW~~~-------~~---~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLv 412 (1221)
T 1vt4_I 343 TWDNWKHV-------NC---DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412 (1221)
T ss_dssp SHHHHHHC-------SC---HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHH
T ss_pred CHHHHHCC-------CH---HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 79998669-------86---189999999998488999999999971779999877999998766778899999999999
Q ss_pred CCCCEEEC--CCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 35425881--883860146999999986202447999742345968899986
Q 000874 473 DKSLITIS--HNCLQMHDLLQEMGRQIVRQESQKEPGKRSRLWDPKEIRRVL 522 (1243)
Q Consensus 473 ~~~Li~~~--~~~~~mHdli~~~~~~i~~~e~~~~~~~~~rl~~~~~i~~vl 522 (1243)
++||++.. .++++|||++++++.. ....+..+.|+.+...+..++
T Consensus 413 dRSLLq~d~~~~rYrMHDLllELr~~-----~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 413 KYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp TSSSSSBCSSSSEEBCCCHHHHHHHH-----HSCCTTHHHHHHHHHHHHHHC
T ss_pred HHCCEEEECCCCEEEEHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 61988986899989860999998568-----985999999999999854858
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=307.05 Aligned_cols=453 Identities=15% Similarity=0.111 Sum_probs=267.6
Q ss_pred EEECCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCC-CCC-
Q ss_conf 541378752000151111178866629983688533102210137850059977788888169981389999999-987-
Q 000874 534 IFMDLSKIEGINLDSRAFTNMSNLRMLKFYVPKFLGMIIEEKLEDSKVQLPDGIDYLPKNLRYLHWYKYPLRTLP-SNF- 611 (1243)
Q Consensus 534 i~l~l~~~~~l~l~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~- 611 (1243)
..++++.+..-.+.+.+|.++++|+.|++.+|.+... .|..+..+ .+|++|++.++.++.++ ..+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI------------HEDTFQSQ-HRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE------------CTTTTTTC-TTCCEEECTTCCCSEECTTTTS
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEE------------CHHHCCCC-CCCCEEECCCCCCCCCCHHHHC
T ss_conf 5898158734717966725676652897889835524------------85113684-3367644889856545865523
Q ss_pred CCCCCCEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 644433002224344211-1111124655301468886643-37998898876189445885787689754599875655
Q 000874 612 KPKNIVELSLRFSKVEQI-WEGKKKAFKLKSIDLSHSEHLI-RIPDLSEIPNLERIYLSNCTNLVHVPASIQNFKYLKFP 689 (1243)
Q Consensus 612 ~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~p~l~~l~~L~~L~L~~c~~l~~~p~~~~~L~~L~~l 689 (1243)
.+.+|++|+++++.+..+ +..+..+++|+.|++++|.... ..|.+..+++|++|++++|......+..++.+..|+.+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred CCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 44215376521267665781012237822389887983411476545687656877765684455496563322156403
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCC----------------------------------------------------C
Q ss_conf 544562300365775655554334689----------------------------------------------------3
Q 000874 690 QISGKITRLYLSQSAIEEVPSSIECLT----------------------------------------------------D 717 (1243)
Q Consensus 690 ~~~~~L~~L~L~~~~i~~lp~~i~~l~----------------------------------------------------~ 717 (1243)
.|+++++.+..+++...... +
T Consensus 183 -------~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 183 -------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp -------EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred -------EEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCC
T ss_conf -------8966798147548667300100135567726677776513356442200201102641226866743032075
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf 41995136865420321102667655230235447686724453278666742356476323-83101466784896128
Q 000874 718 LVELDLRDCKRLKRISTRFCKLKSLVKLCLDDCLNLERFPEILEEMEHLKRIYLERTAITEL-PSSFENLLGLEFLTVSG 796 (1243)
Q Consensus 718 L~~L~L~~c~~l~~lp~~~~~l~~L~~L~Ls~c~~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~ 796 (1243)
|+.|++++|......+..+..+++|++|++++|.. ..+|..+..+++|+.|++++|.+..+ |..+..+++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred EEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCC-CCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 05999445765855777744566788895628826-77782141654688897716876867602330157689888989
Q ss_pred CCCCCCCCC-CCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCEEEECCCCCC
Q ss_conf 988876797-669999985888148877557---9222289887399805687778888100069998859980168997
Q 000874 797 CSKLDKLPD-NIGNLKSLDFIAAVGSAISQL---PSSVADSNVLRMLFFCRCRRLLSLPRLLLSGLSSLKFLYISDCAVT 872 (1243)
Q Consensus 797 c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~L~~~~l~ 872 (1243)
|.....++. .+..+++|+.|++++|.+... +..+..+++|+.|++++|......+ ..+..+++|+.|++++|.+.
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEE
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCC
T ss_conf 97444346245506675898878899666456752210567888989898996775788-87347745776878888677
Q ss_pred CC--CHHHCCCCCCCEEECCCCCCCC-CCHHCCCCCCCCEEEECCCCCCCC-CC-----CCCCCCCEEECCCCCCCCCCC
Q ss_conf 76--4010179988889676898843-450001999998996258888875-78-----767777588420687888559
Q 000874 873 EI--PQDIACLSSLTTLNLSGNNFES-LPASIKQLSQLSSLYLKDCKMLQS-LP-----ELPLCLKYLDLRDCNTLRSLP 943 (1243)
Q Consensus 873 ~l--p~~l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~l~~-lp-----~l~~~L~~L~l~~c~~l~~~~ 943 (1243)
.. +..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|..... ++ ...++|+.|++++|......+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 75652124176558889898985577687787378878889898998885434543124048876688799996670686
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCC--CCCCCCCEEEECCCCCC
Q ss_conf 9820113344224789778999881444100345520137999864222--34685418983174443
Q 000874 944 ELPLCLESLKARNCKGLQSLPEIPSCLQELDASVLEKLSKHSPDRSIKW--RYKTSTIYFEFTNCLEL 1009 (1243)
Q Consensus 944 ~~~~~l~~L~~l~~~~~~~~~~~p~~L~~L~~~~~~~L~~~~~~~~~~~--~~~~sl~~l~~~~C~~l 1009 (1243)
..+..+++|+.+++++|.+....|..+..+..+ .++++.|.+.+..+. ...++++.+++.+|+-.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 463265678889898980686896684756651-8987689414268766256778788967799861
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=304.23 Aligned_cols=356 Identities=15% Similarity=0.170 Sum_probs=188.9
Q ss_pred CCCCCCCC-CCCCCCEECCCCCCCCC------------------CCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 99999987-64443300222434421------------------111111--24655301468886643379-9889887
Q 000874 604 LRTLPSNF-KPKNIVELSLRFSKVEQ------------------IWEGKK--KAFKLKSIDLSHSEHLIRIP-DLSEIPN 661 (1243)
Q Consensus 604 l~~lp~~~-~~~~L~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~p-~l~~l~~ 661 (1243)
++.+|..+ .+.+|+.|+|++|.+.. +|..+. .+++|+.|+|++|.....+| .+..+++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred CCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 15211887569998789796886788746532233222222445874440255999778987189887527387737999
Q ss_pred CCEEECCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 6189445885-787-689754599875655544562300365775655554--334689341995136865420321102
Q 000874 662 LERIYLSNCT-NLV-HVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPS--SIECLTDLVELDLRDCKRLKRISTRFC 737 (1243)
Q Consensus 662 L~~L~L~~c~-~l~-~~p~~~~~L~~L~~l~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~~~ 737 (1243)
|+.|+|++|. ... .+|..++.+.. .+....+|+.|++++|.++.+|. .++.+++|+.|++++|... .+| .+.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLAD--DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHH--CTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHH--CCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHC
T ss_conf 89998968987656646177875233--01556883199822894776187235515898898989799825-621-224
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCEEEECCCCCCCCCCC---CCC--C
Q ss_conf 6676552302354476867244532786-66742356476323831014667--84896128988876797---669--9
Q 000874 738 KLKSLVKLCLDDCLNLERFPEILEEMEH-LKRIYLERTAITELPSSFENLLG--LEFLTVSGCSKLDKLPD---NIG--N 809 (1243)
Q Consensus 738 ~l~~L~~L~Ls~c~~~~~~p~~l~~l~~-L~~L~L~~~~i~~lp~~l~~l~~--L~~L~L~~c~~l~~lp~---~l~--~ 809 (1243)
.+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..++. |+.|++++|...+.+|. .+. .
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 7985007987187125-035877525114989998499787476445225567778897708847886432000000135
Q ss_pred CCCCCEEECCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCHHHCCCC-------CCCCEEEECCCCCCCCCHHHC--
Q ss_conf 9998588814887755792222-898873998056877788881000699-------988599801689977640101--
Q 000874 810 LKSLDFIAAVGSAISQLPSSVA-DSNVLRMLFFCRCRRLLSLPRLLLSGL-------SSLKFLYISDCAVTEIPQDIA-- 879 (1243)
Q Consensus 810 l~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~l-------~~L~~L~L~~~~l~~lp~~l~-- 879 (1243)
+++|+.|++++|.+..+|..+. .+++|+.|++++|.. ..+|...+... ++|+.|+|++|.+..+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHC
T ss_conf 79768898319968865978871389889998989968-85496784555334321487158988899786652776244
Q ss_pred CCCCCCEEECCCCCCCCCCHHCCCCCCCCEEEECC------CCCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 79988889676898843450001999998996258------888875787---677775884206878885599820113
Q 000874 880 CLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKD------CKMLQSLPE---LPLCLKYLDLRDCNTLRSLPELPLCLE 950 (1243)
Q Consensus 880 ~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~l~~lp~---l~~~L~~L~l~~c~~l~~~~~~~~~l~ 950 (1243)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.....+|. ..++|+.|++++|.. +.+|..+. +
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~ 827 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--P 827 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--S
T ss_pred CCCCCCEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--C
T ss_conf 27986989908997876105661599988998879977665632444868883699878898879978-74087662--8
Q ss_pred CCCCCCCCCCCCCCCCCH
Q ss_conf 344224789778999881
Q 000874 951 SLKARNCKGLQSLPEIPS 968 (1243)
Q Consensus 951 ~L~~l~~~~~~~~~~~p~ 968 (1243)
+|+.+++++|++....+.
T Consensus 828 ~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 828 QLYILDIADNPNISIDVT 845 (876)
T ss_dssp SSCEEECCSCTTCEEECG
T ss_pred CCCEEECCCCCCCCCCHH
T ss_conf 778899979988811767
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=304.03 Aligned_cols=352 Identities=15% Similarity=0.185 Sum_probs=210.9
Q ss_pred CCCCCCCCC-CCCCCCEECCCCCCCCC------------------CCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 999999987-64443300222434421------------------111111--24655301468886643379-988988
Q 000874 603 PLRTLPSNF-KPKNIVELSLRFSKVEQ------------------IWEGKK--KAFKLKSIDLSHSEHLIRIP-DLSEIP 660 (1243)
Q Consensus 603 ~l~~lp~~~-~~~~L~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~p-~l~~l~ 660 (1243)
.++.+|..+ .+.+|++|+++++.+.. +|..+. .+++|+.|++++|.....+| .+.+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCC
T ss_conf 77507877725647878988688236642322122222100102486322004468788898048857762838883499
Q ss_pred CCCEEECCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 76189445885-787-689754599875655544562300365775655554--33468934199513686542032110
Q 000874 661 NLERIYLSNCT-NLV-HVPASIQNFKYLKFPQISGKITRLYLSQSAIEEVPS--SIECLTDLVELDLRDCKRLKRISTRF 736 (1243)
Q Consensus 661 ~L~~L~L~~c~-~l~-~~p~~~~~L~~L~~l~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~~ 736 (1243)
+|++|++++|. ... .+|..++.+..+ ....+|+.|+++++.++.+|. .++.+++|+.|++++|.....+| .+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~---~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADA---PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHS---GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HH
T ss_conf 9788978479887665335788754304---6578888898979937766765554257888989690880705166-64
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCC-----
Q ss_conf 26676552302354476867244532786-6674235647632383101466--784896128988876797669-----
Q 000874 737 CKLKSLVKLCLDDCLNLERFPEILEEMEH-LKRIYLERTAITELPSSFENLL--GLEFLTVSGCSKLDKLPDNIG----- 808 (1243)
Q Consensus 737 ~~l~~L~~L~Ls~c~~~~~~p~~l~~l~~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~c~~l~~lp~~l~----- 808 (1243)
..+++|+.|++++|... .+|..+..+++ |+.|++++|.++.+|..+..++ +|+.|++++|......|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 78898898989899403-03375651023686898529827544665533345766889774885788652442002201
Q ss_pred --CCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCHHHCCCCC-------CCCEEEECCCCCCCCCHHH
Q ss_conf --99998588814887755792222-8988739980568777888810006999-------8859980168997764010
Q 000874 809 --NLKSLDFIAAVGSAISQLPSSVA-DSNVLRMLFFCRCRRLLSLPRLLLSGLS-------SLKFLYISDCAVTEIPQDI 878 (1243)
Q Consensus 809 --~l~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~-------~L~~L~L~~~~l~~lp~~l 878 (1243)
.+++|+.|++++|.+..+|..+. .+++|+.|++++|... .+|...+.... +|+.|++++|.+..+|..+
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 125898888977279668678788715898898989799788-7397884044001221477338989699388168545
Q ss_pred C--CCCCCCEEECCCCCCCCCCHHCCCCCCCCEEEECC------CCCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 1--79988889676898843450001999998996258------888875787---677775884206878885599820
Q 000874 879 A--CLSSLTTLNLSGNNFESLPASIKQLSQLSSLYLKD------CKMLQSLPE---LPLCLKYLDLRDCNTLRSLPELPL 947 (1243)
Q Consensus 879 ~--~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~l~~lp~---l~~~L~~L~l~~c~~l~~~~~~~~ 947 (1243)
. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |...+.+|. ..++|+.|++++|.. +.+|..+.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH
T ss_conf 34458876989898998877682353088878788988866566731212737785699878898989947-70597683
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 1133442247897789
Q 000874 948 CLESLKARNCKGLQSL 963 (1243)
Q Consensus 948 ~l~~L~~l~~~~~~~~ 963 (1243)
++|+.+++++|++.
T Consensus 587 --~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 587 --PNISVLDIKDNPNI 600 (636)
T ss_dssp --TTCCEEECCSCTTC
T ss_pred --CCCCEEECCCCCCC
T ss_conf --86789987699876
Done!