Citrus Sinensis ID: 000877

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240--
MGGYDSGSASKDGRDEDDEEEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEVSGFELLVSPLT
ccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccEEccccccEEEEEccccccccccccccccccEEEEcccccEEEEccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHccccccccccccEEEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccc
ccccccccccccccccccHHHHcHccccccEEEEEEccccccccccHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccHHcHHHHHHccccHHcccHHccccccEEEcHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHccHHHcccccccccccccEEEEccccEEEEEEHHcccccccccccccccccccccccEccccHHHHcHHcHHHHHccccccccccccccccccccccccccHHccccccccccccccccHHcccccccccccccHHHcccccHHHHcccccccccccccccHHHHEEEccccccccccccEccccccccHHccccEEEEccccccccccccEccccccccccccccEEEcccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHcccHHHHHcccccccccccEEEEccccccEEEEEccccccccccccccccEEccccccccccccHHHHHHHcccEccccccHHHcccccccEEEEEEEEEEccccHccccccccccccHHHHccccccccccccEEEEEEcccccHHHHcccHHHHHHHHHEccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHccEcccccccccccccEEEEEccccEEEEEEcccEEEEcccccEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHcccccHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccccHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEccccccccccccccHccccccccEccccHHHHHccHHHHHHHHHHccccHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEEEEcccc
mggydsgsaskdgrdeddeeeyedvsggnrllgfmfgnvdyagdldvdylDEDAKEHLAAVADklgpsltdidvwnsqscFQLFCSYCllsvnspqppvdaveqdydkkaedavdyedideqyegpeiqiaseedyllpkkeYFAAEVSLAalkptaspfddenydedeELEKEHEevdketedttTILSGEQvecatavpdgekspegdpqvgslgaeeemtagvKDYDEELADIlkgpldgqvstplpvlcveDGKVILRFSEifgiheplkkgkkrdqrystpkdkyntmdvsslveedeevylkgsgqgfplfkeanifqhgifslndddseLVKFGVeqdaatisehdeqrkdscicsepmkeesnvnpsvgwksmpspnffpldqhdweenivwdnspaasdnsiesheiAGADVESALMRGIeldtgqnnfherstspnekdcivnmqnspvlsetfgsksssdntshlftesryhpqllrlesqldldnhshangikenvsikLCQSDAVKRfskhslqnrdmmegswldniiwepvdavgkpklilDLQDEQMLFEILdnkddehpllhAGAMIitrsakpsdfkpaesVKLFYLGkeledhksladqnvrpnsLIHLIRTKIHllpraqklpgenkslrppgafkkksdlsvkdGHVFLMEYCEerplllsnagmgaNLCTYyqksspgdqagallcsgnnclgnvltlepgdkspflgdikagcsqssletnmyrapvfthkvatTDFLLVRSAKGKISIRRIDKVAVVAQqeplmevmspgsknlqtYSINRMLVNVYREFSAAAKRgllpcigvdelsvqfpnLSEAIIRKKLKECAFlrrdgngkqvwsmkrtfhipsegdlrklaypehvcsYESMQAGLYRLkhlgitqltlpaSISSAMSQLPDEAIALAAASHIERelqitpwnlssnfvactnqdrenierleitgvgdpsgrglgfsyvraapkasvSSAMVKKKAaanrggstvtgtdaDLRRLSMEAAREVLLKfnvpeemiAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSlsaadddeigsdsehsdldsFAGDLENlldaeefeeeesnydtkhdkvegvkglkmrrrpiqvqAEEEIEDEAAEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKAnkpakhiaitvqpngshtaneqikdpkevsgfellvsplt
mggydsgsaskdgrdeddeeEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAAlkptaspfddeNYDEDEELekeheevdketedtttilsgeQVECATavpdgekspegdpqvgslGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSeifgiheplkkgkkrdqrystpkdkyntmdvsslvEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAatisehdeqrkdscicsepmkeesnvnpsvgwKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHAngikenvsiklcqSDAVKRFSkhslqnrdmmegSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIItrsakpsdfkPAESVKLFYLGKELEdhksladqnvrpNSLIHLIRTKIHllpraqklpgenkslrppgafkkksdlsVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRsakgkisirriDKVAVVAqqeplmevmspgsknlqTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFlrrdgngkqvwsmkrtfhipsegdlrklAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLeitgvgdpsgrGLGFSYVRAAPKASVSSAMVkkkaaanrggstvtgtdadlrRLSMEAAREVllkfnvpeemiaKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFeeeesnydtkhdkvegvkglkmrrrpIQVQAEEEIEDEAAEAAELCRLLMDDDEAELKkkkkktkaqvegglslaksisglEIVERLKKANKPAKHiaitvqpngshtaneqikdpkevsgfellvsplt
MGGYDSGSASKdgrdeddeeeyedVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFddenydedeelekeheevdketedtttILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMdvsslveedeevYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRaapkasvssamvkkkaaaNRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDlenlldaeefeeeeSNYDTKHDKVEGVKGLKMRRRPIQVQaeeeiedeaaeaaeLCRLLMDDDEAELkkkkkktkAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEVSGFELLVSPLT
***************************GNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVN**********************************IQIASEEDYLLPKKEYFAAEVSLA********************************************************************************ELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHE********************************EVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGV*******************************************FFPLDQHDWEENIVWD******************************************************************************************************IKENVSIKLCQSDAVKRF********DMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITR***********SVKLFYLGKELE********NVRPNSLIHLIRTKIHLLP*************************VKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEV*****KNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVG*****GLGFSYV****************************************AREVLLKFNVPEEMIAKQTRWHRIAMIRK**************************************************************************************************************************************************************************************************
********************************GFMFGNVDYAGDLDVDYLDEDAKE****************************************************************************************************************************************************************************************************CVEDGKVILRF*****************************************************************************************************************GWKSMPSPNFFPLDQHDWEENIVWDNSP********************************************************************************************************************FSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLF************************************LFY***************VRPNSLIHLIRT****************************DLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYY******************CLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSA***********VDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLP********************SHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYV*************************************************VPEEMIAKQTRWHRIA************************QEIWDRQV***********************************************************************************************************************************************************SGFELLVSPL*
*************************SGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDD************************TILSGEQVECATA****************LGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPL***********TPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATI*********SCICSEPM********SVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVL**************HLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAA**********************VTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSS***************KCQEIWDRQVQSL***************DLDSFAGDLENLLDAEE**********KHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEA**************GGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEVSGFELLVSPLT
*******************EEY**VSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQ*************************QDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAAL*******************************************************************************************VSTPLPVLCVEDGKVILRFSEIFGIHEPLK*********STPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSL****************************SCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTG*NNF*ERSTSPNEKDCIVNMQNSPVLSETFG*****************HP**L*****LDL***S***GIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTL************DEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASV******************TGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLS**************DLDS*A*DL***LDA*************************************IEDEAAEAAELCRLLMDDDEAELKK****TKAQVEGGLSLAKSIS**************AKHIAI*VQPNGSHTANEQIKDPKEVSGFELLVSPL*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGGYDSGSASKDGRDEDDEEEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIxxxxxxxxxxxxxxxxxxxxxLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEVSGFELLVSPLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1242 2.2.26 [Sep-21-2011]
Q8LRK9 1919 Transcription initiation yes no 0.524 0.339 0.672 0.0
Q67W65 1810 Transcription initiation yes no 0.474 0.325 0.655 0.0
Q6PUA2 1786 Transcription initiation no no 0.458 0.319 0.667 0.0
Q54DH8 2310 Transcription initiation yes no 0.331 0.178 0.363 5e-70
P21675 1872 Transcription initiation yes no 0.342 0.227 0.351 1e-67
Q60544 1865 Transcription initiation N/A no 0.338 0.225 0.355 2e-67
Q80UV9 1891 Transcription initiation yes no 0.338 0.222 0.353 3e-67
Q8IZX4 1826 Transcription initiation no no 0.346 0.235 0.353 1e-66
P51123 2129 Transcription initiation yes no 0.322 0.188 0.332 4e-64
Q09813979 Putative transcription in yes no 0.239 0.304 0.306 3e-38
>sp|Q8LRK9|TAF1A_ARATH Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1 Back     alignment and function desciption
 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/681 (67%), Positives = 531/681 (77%), Gaps = 29/681 (4%)

Query: 577  LHAG-----AMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTK 631
            LH G     + +  ++++  DFK  E+VK+FY GKEL+D KSLA QNV+PNSL+HLIRTK
Sbjct: 675  LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTK 734

Query: 632  IHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCT 691
            +HL P AQKLPGENKSLRPPGAFKKKSDLS KDGHVFLMEYCEERPL+LSNAGMGANLCT
Sbjct: 735  VHLWPWAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANLCT 794

Query: 692  YYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFT 751
            YYQKSSP DQ G LL + ++ LGNV+ LEPGDKSPFLG+I AGCSQSS+ETNMY+AP+F 
Sbjct: 795  YYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAGCSQSSVETNMYKAPIFP 854

Query: 752  HKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYR 811
             ++ +TD+LLVRS KGK+S+RRIDK+ VV QQEP MEVMSPGSKNLQTY +NRMLV VYR
Sbjct: 855  QRLQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGSKNLQTYLVNRMLVYVYR 914

Query: 812  EFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIP 871
            EF    + G    I  DELS  F NL++AII+K +K  A  +RD NG+  W+ K +   P
Sbjct: 915  EF--FKRGGGEHPIAADELSFLFSNLTDAIIKKNMKIIACWKRDKNGQSYWTKKDSLLEP 972

Query: 872  SEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASH 931
             E +L+KL  PEHVCSYESM AGLYRLKHLGIT+ TLPASIS+A++QLPDEAIALAAASH
Sbjct: 973  PESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISNALAQLPDEAIALAAASH 1032

Query: 932  IERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAM 991
            IERELQITPWNLSSNFVACTNQDR NIERLEITGVGDPSGRGLGFSYVRAAPKA  ++  
Sbjct: 1033 IERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGLGFSYVRAAPKAPAAAGH 1092

Query: 992  VKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSS 1051
            +KKKAAA RG  TVTGTDADLRRLSMEAAREVL+KFNVP+E+IAKQTRWHRIAMIRKLSS
Sbjct: 1093 MKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEIIAKQTRWHRIAMIRKLSS 1152

Query: 1052 EQAASGV-------------------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE 1092
            EQAASGV                   Q+QQQ R KCQEIWDRQ+ SLSA D DE  S++E
Sbjct: 1153 EQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLLSLSAFDGDENESENE 1212

Query: 1093 -HSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEA 1151
             +SDLDSFAGDLENLLDAEE  E E +  +K+DK++GVKGLKMRRRP QV+ +EEIEDEA
Sbjct: 1213 ANSDLDSFAGDLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEA 1272

Query: 1152 AEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAI 1211
             E AELCRLLM D++ + KKKK K   +  G     +    L+  E ++KAN   K   I
Sbjct: 1273 TEYAELCRLLMQDEDQKKKKKKMKGVGEGMGSYPPPRPNIALQSGEPVRKANAMDKK-PI 1331

Query: 1212 TVQPNGSHTANEQ-IKDPKEV 1231
             +QP+ S   NE  IKD + V
Sbjct: 1332 AIQPDASFLVNESTIKDNRNV 1352
Largest component and core scaffold of the TFIID basal transcription factor complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q67W65|TAF1_ORYSJ Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PUA2|TAF1B_ARATH Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q54DH8|TAF1_DICDI Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum GN=taf1 PE=3 SV=1 Back     alignment and function description
>sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2 Back     alignment and function description
>sp|Q60544|TAF1_MESAU Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus GN=TAF1 PE=2 SV=1 Back     alignment and function description
>sp|Q80UV9|TAF1_MOUSE Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=2 SV=2 Back     alignment and function description
>sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens GN=TAF1L PE=1 SV=1 Back     alignment and function description
>sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3 Back     alignment and function description
>sp|Q09813|T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.14 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1242
302143274 1798 unnamed protein product [Vitis vinifera] 0.948 0.655 0.595 0.0
449475476 1734 PREDICTED: LOW QUALITY PROTEIN: transcri 0.892 0.638 0.507 0.0
359485367 2068 PREDICTED: transcription initiation fact 0.522 0.313 0.733 0.0
255563246 1885 transcription initiation factor tfiid, p 0.517 0.341 0.744 0.0
224093308 1851 histone acetyltransferase [Populus trich 0.516 0.346 0.727 0.0
224140747 1857 histone acetyltransferase [Populus trich 0.512 0.343 0.732 0.0
15223289 1919 transcription initiation factor TFIID su 0.524 0.339 0.672 0.0
356529777 1910 PREDICTED: transcription initiation fact 0.471 0.306 0.742 0.0
6714281 1994 F6N18.13 [Arabidopsis thaliana] 0.524 0.326 0.646 0.0
297851714 1951 F6N18.13 [Arabidopsis lyrata subsp. lyra 0.519 0.330 0.648 0.0
>gi|302143274|emb|CBI21835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 755/1268 (59%), Positives = 891/1268 (70%), Gaps = 90/1268 (7%)

Query: 35   MFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNS 94
            MFGNVD AGDLD +Y+ +DAKEHLAA+ADKLGPSLTDID                LSV S
Sbjct: 1    MFGNVDGAGDLDYNYVFQDAKEHLAALADKLGPSLTDID----------------LSVKS 44

Query: 95   PQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALK 154
            PQ P D  EQDYD+KAEDAV+YEDIDEQYEGPEIQ A+EEDYLL KKEYF+A+VS+A+L 
Sbjct: 45   PQTPADGAEQDYDEKAEDAVNYEDIDEQYEGPEIQAATEEDYLLSKKEYFSADVSVASLD 104

Query: 155  PTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVG 214
             +AS FDD+NYDEDEE EKEHE VD  +E    I SGEQ E  + V +GEKSP+ D   G
Sbjct: 105  HSASVFDDDNYDEDEEFEKEHEVVDNNSE-VQAISSGEQGEHLSVVSEGEKSPDDDLFPG 163

Query: 215  SLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLK 274
             L   E +T  ++D  EE  + L+ P +G+ S PLP+LCVEDG VILRFSEIFGIH PLK
Sbjct: 164  LL-EPENLTGDLEDIPEEEPEGLEEPFEGKRSAPLPILCVEDGMVILRFSEIFGIHGPLK 222

Query: 275  KGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDD 334
            KG+KRD+RY+ PK++Y +MD    VEEDEE +LKG  Q F   K   + Q       +D+
Sbjct: 223  KGEKRDRRYTIPKERYKSMDAPDNVEEDEEAFLKGGCQAFSFTKHKLLTQDDASVFMEDE 282

Query: 335  SELVKFGVEQDAATIS-EHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHD 393
            +EL K GV Q  AT+  ++DEQRK SCI +EPMKE+  V+ S  W S  SP F+PLDQ D
Sbjct: 283  AELKKVGVVQGTATMELQNDEQRKHSCISAEPMKEDMPVDLSEFWLSPLSPKFYPLDQQD 342

Query: 394  WEENIVWDNSPAASDNSIESHEIAGADVESA------------LMRGIELDTGQNNFHER 441
            WE+ I+WDNSP  SDNS ES EI+G D E+             ++ G  +D      H+ 
Sbjct: 343  WEDKIIWDNSPEVSDNSAESCEISGPDSEAIRRFNKLTLQNRDMLEGSWVDRIIWEPHKP 402

Query: 442  STSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHA 501
             + P     I+++Q+  +L E    K   +   H        P        ++L  H   
Sbjct: 403  ISKPK---LILDLQDEQMLFEILDDKDGKNLGLHAGAMLITRPVKSSTGDSIELPVHGGP 459

Query: 502  NGIKENVS-----IKLCQSDAVKRFSK----------HS------------LQNRDMMEG 534
            +G + N++     +    S  +K  SK          HS            L N+D+   
Sbjct: 460  SGGRFNIANDKFYLNRKTSQQLKSHSKKRTAHGVKILHSIPALKLQTMKLKLSNKDIA-N 518

Query: 535  SWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGA-----MIITRSAK 589
                  +W P D     K    L  +  +  IL +   +   LH  A      +  +++K
Sbjct: 519  FHRPKALWYPHDIEMAVKEQGKLPTQGPMKIILKSLGGKGSKLHVDAEETVSSVKLKASK 578

Query: 590  PSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLR 649
              DFKP+E VK+FY GKELEDHKSLA QNV+PNSL+HL+RTKIHL PRAQKLPGENKSLR
Sbjct: 579  KLDFKPSEMVKIFYTGKELEDHKSLAAQNVQPNSLLHLVRTKIHLWPRAQKLPGENKSLR 638

Query: 650  PPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSG 709
            PPGAFKKKSDLSVKDGHVFLMEYCEERPLLL N GMGA LCTYYQKS+PGD  GA + +G
Sbjct: 639  PPGAFKKKSDLSVKDGHVFLMEYCEERPLLLGNVGMGARLCTYYQKSAPGDHTGAFMRNG 698

Query: 710  NNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKI 769
            N+ LG VLTL+P DKSPFLGDIK GCSQSSLETNMYRAP+F HKV++TD+LLVRSAKGK+
Sbjct: 699  NSSLGTVLTLDPADKSPFLGDIKPGCSQSSLETNMYRAPLFPHKVSSTDYLLVRSAKGKL 758

Query: 770  SIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDE 829
            SIRRID++ VV QQEP MEVMSPG+K LQTY +NR+LV +YREF A  KRG LPCI  DE
Sbjct: 759  SIRRIDRIDVVGQQEPHMEVMSPGTKGLQTYIMNRLLVYMYREFRAGEKRGSLPCIRADE 818

Query: 830  LSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYE 889
            LS QFPN+SE  +RK+LK CA L++  NG   W M+R F IP E +LR++  PE+VC+YE
Sbjct: 819  LSAQFPNISEPFLRKRLKHCADLQKGSNGLLFWVMRRNFRIPLEEELRRMVTPENVCAYE 878

Query: 890  SMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVA 949
            SMQAGLYRLKHLGIT+LTLP  +SSAM+QLP EAIALAAASHIERELQITPWNLSSNFVA
Sbjct: 879  SMQAGLYRLKHLGITRLTLPTGLSSAMNQLPYEAIALAAASHIERELQITPWNLSSNFVA 938

Query: 950  CTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTD 1009
            CTNQDRENIERLEITGVGDPSGRGLGFSYVR APKA +S+AMVKKK    RGGSTVTGTD
Sbjct: 939  CTNQDRENIERLEITGVGDPSGRGLGFSYVRTAPKAPISNAMVKKKITVGRGGSTVTGTD 998

Query: 1010 ADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGV----------- 1058
            ADLRRLSMEAAREVLLKFNVPEE+IAKQTRWHRIAMIRKLSSEQAASGV           
Sbjct: 999  ADLRRLSMEAAREVLLKFNVPEELIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYA 1058

Query: 1059 --------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE-HSDLDSFAGDLENLLDA 1109
                    QLQQQTR KCQEIWDRQVQSLSA D DEI SDSE +SDLDSFAGDLENLLDA
Sbjct: 1059 RGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVDSDEIESDSEANSDLDSFAGDLENLLDA 1118

Query: 1110 EEFEE-EESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEAE 1168
            EE E+ EE N ++KHD+ +GV+GLKMRRRP Q QAEEEIEDEAAEAAELCR+LMDDDEAE
Sbjct: 1119 EECEDGEEGNCESKHDRTDGVRGLKMRRRPSQAQAEEEIEDEAAEAAELCRMLMDDDEAE 1178

Query: 1169 LKKKKKKTKAQVEGGLSLAKSIS-GLEIVERLKKANKPAKHIAITVQPNGSHTANEQ-IK 1226
             KKKKK      E GL+L   ++ G E  +++KK +   K +   VQP+GS++  E+  +
Sbjct: 1179 RKKKKKTRPVGEEEGLALGSQLNFGFENGQKMKKNSAVVKQLVSKVQPDGSYSQKEKAFR 1238

Query: 1227 DPKEVSGF 1234
            D KEV  F
Sbjct: 1239 DSKEVESF 1246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449475476|ref|XP_004154465.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359485367|ref|XP_002273712.2| PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563246|ref|XP_002522626.1| transcription initiation factor tfiid, putative [Ricinus communis] gi|223538102|gb|EEF39713.1| transcription initiation factor tfiid, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224093308|ref|XP_002309876.1| histone acetyltransferase [Populus trichocarpa] gi|222852779|gb|EEE90326.1| histone acetyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224140747|ref|XP_002323740.1| histone acetyltransferase [Populus trichocarpa] gi|222866742|gb|EEF03873.1| histone acetyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15223289|ref|NP_174552.1| transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana] gi|75157524|sp|Q8LRK9.1|TAF1A_ARATH RecName: Full=Transcription initiation factor TFIID subunit 1-A; Short=AtTAF1a; AltName: Full=TAFII250-A gi|21105767|gb|AAM34782.1|AF510669_1 HAF1 [Arabidopsis thaliana] gi|332193403|gb|AEE31524.1| transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356529777|ref|XP_003533464.1| PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] Back     alignment and taxonomy information
>gi|6714281|gb|AAF25977.1|AC017118_14 F6N18.13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297851714|ref|XP_002893738.1| F6N18.13 [Arabidopsis lyrata subsp. lyrata] gi|297339580|gb|EFH69997.1| F6N18.13 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1242
TAIR|locus:2035574 1919 HAF01 "AT1G32750" [Arabidopsis 0.553 0.357 0.556 2.7e-252
TAIR|locus:2085909 1786 HAF2 "AT3G19040" [Arabidopsis 0.573 0.398 0.535 3.3e-250
DICTYBASE|DDB_G0292242 2310 taf1 "transcription initiation 0.378 0.203 0.338 5e-70
MGI|MGI:1336878 1891 Taf1 "TAF1 RNA polymerase II, 0.268 0.176 0.334 1.2e-68
RGD|1562050 1902 Taf1 "TAF1 RNA polymerase II, 0.268 0.175 0.334 3.3e-68
UNIPROTKB|Q60544 1865 TAF1 "Transcription initiation 0.268 0.178 0.337 4.2e-68
UNIPROTKB|P21675 1872 TAF1 "Transcription initiation 0.268 0.177 0.337 7e-68
UNIPROTKB|B1Q2X3 1895 N-TAF1 "TAF1 RNA polymerase II 0.268 0.175 0.337 7.7e-68
UNIPROTKB|F1MF62 1882 TAF1 "Uncharacterized protein" 0.268 0.176 0.337 9.3e-68
ZFIN|ZDB-GENE-030131-5576 1947 taf1 "TAF1 RNA polymerase II, 0.266 0.170 0.332 1e-67
TAIR|locus:2035574 HAF01 "AT1G32750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1795 (636.9 bits), Expect = 2.7e-252, Sum P(3) = 2.7e-252
 Identities = 407/731 (55%), Positives = 493/731 (67%)

Query:   389 LDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQN-NFHERSTSPNE 447
             L    W ++I+WD+    S + +    I     E  +    + +  +N   H  +     
Sbjct:   502 LGDEAWLDSIIWDSEKELSRSKL----IFDLQDEQMVFEIFDNEESKNLQLHAGAM---- 553

Query:   448 KDCIVNMQNSPVLSETF--GSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIK 505
                IV+ ++S    ETF  G +S+S    +L  +  Y    +  +S   L     AN  K
Sbjct:   554 ---IVS-RSSKSKDETFQEGCESNSGWQFNLSNDKFY----MNGKSSQQLQ----ANTNK 601

Query:   506 ENV-SIKLCQS-DAVK-RFSKHSLQNRDMMEGSWLDNIIWEPVD---AVGKPKLILDLQD 559
              +V S+++  S  A+K +  K  L N+D+         +W P D   A+ +   +     
Sbjct:   602 SSVHSLRVFHSVPAIKLQTMKSKLSNKDIANFH-RPKALWYPHDNELAIKQQGKLPTRGS 660

Query:   560 EQMLFEILDNKDDEHPLLHAGA--MIITRSAKPS---DFKPAESVKLFYLGKELEDHKSL 614
              +++ + L  K  +   LH G    + +  AK S   DFK  E+VK+FY GKEL+D KSL
Sbjct:   661 MKIIVKSLGGKGSK---LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSL 717

Query:   615 ADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCE 674
             A QNV+PNSL+HLIRTK+HL P AQKLPGENKSLRPPGAFKKKSDLS KDGHVFLMEYCE
Sbjct:   718 AAQNVQPNSLVHLIRTKVHLWPWAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCE 777

Query:   675 ERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAG 734
             ERPL+LSNAGMGANLCTYYQKSSP DQ G LL + ++ LGNV+ LEPGDKSPFLG+I AG
Sbjct:   778 ERPLMLSNAGMGANLCTYYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAG 837

Query:   735 CSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGS 794
             CSQSS+ETNMY+AP+F  ++ +TD+LLVRS KGK+S+RRIDK+ VV QQEP MEVMSPGS
Sbjct:   838 CSQSSVETNMYKAPIFPQRLQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGS 897

Query:   795 KNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRR 854
             KNLQTY +NRMLV VYREF      G  P I  DELS  F NL++AII+K +K  A  +R
Sbjct:   898 KNLQTYLVNRMLVYVYREFFKRGG-GEHP-IAADELSFLFSNLTDAIIKKNMKIIACWKR 955

Query:   855 DGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISS 914
             D NG+  W+ K +   P E +L+KL  PEHVCSYESM AGLYRLKHLGIT+ TLPASIS+
Sbjct:   956 DKNGQSYWTKKDSLLEPPESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISN 1015

Query:   915 AMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGL 974
             A++QLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDR NIERLEITGVGDPSGRGL
Sbjct:  1016 ALAQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGL 1075

Query:   975 GFSYVRXXXXXXXXXXXXXXXXXXNRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMI 1034
             GFSYVR                   RG  TVTGTDADLRRLSMEAAREVL+KFNVP+E+I
Sbjct:  1076 GFSYVRAAPKAPAAAGHMKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEII 1135

Query:  1035 AKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKC---QEIWDRQVQSLSAADDDEIGSDS 1091
             AKQTRWHRIAMIRKLSSEQAASGV++   T GK    Q +   Q+Q  +     EI  D 
Sbjct:  1136 AKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIW-DR 1194

Query:  1092 EHSDLDSFAGD 1102
             +   L +F GD
Sbjct:  1195 QLLSLSAFDGD 1205
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0004402 "histone acetyltransferase activity" evidence=ISS
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
TAIR|locus:2085909 HAF2 "AT3G19040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292242 taf1 "transcription initiation factor TFIID subunit 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1336878 Taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562050 Taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q60544 TAF1 "Transcription initiation factor TFIID subunit 1" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
UNIPROTKB|P21675 TAF1 "Transcription initiation factor TFIID subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B1Q2X3 N-TAF1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, neuron specific isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MF62 TAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5576 taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018562001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1798 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032691001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (676 aa)
    ••  0.597
GSVIVG00021654001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (351 aa)
    ••  0.456

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1242
pfam12157457 pfam12157, DUF3591, Protein of unknown function (D 7e-86
COG5179968 COG5179, TAF1, Transcription initiation factor TFI 3e-49
pfam0924762 pfam09247, TBP-binding, TATA box-binding protein b 5e-09
pfam0024069 pfam00240, ubiquitin, Ubiquitin family 2e-05
cd0176969 cd01769, UBL, Ubiquitin-like domain of UBL 3e-05
smart0021372 smart00213, UBQ, Ubiquitin homologues 3e-05
>gnl|CDD|221445 pfam12157, DUF3591, Protein of unknown function (DUF3591) Back     alignment and domain information 
 Score =  286 bits (735), Expect = 7e-86
 Identities = 136/435 (31%), Positives = 203/435 (46%), Gaps = 45/435 (10%)

Query: 618  NVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKD-GHVFLMEYCEER 676
            N RP   I    +K+    +      + K +     FK   DL++ D   + L+EY EE 
Sbjct: 61   NFRPGLQIVF--SKLKHRKKKHD---KGKDISE--LFKTTKDLTLGDTSPLILLEYSEEY 113

Query: 677  PLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPF--LGDIKAG 734
            P +LSN GMG+ +  YY+K    D     L  G   +     L P DKSPF   G ++ G
Sbjct: 114  PPVLSNFGMGSKIINYYRKKDEEDTPRPKLEIGETHV-----LGPQDKSPFWNFGFVEPG 168

Query: 735  CSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKIS----IRRIDKVAVVAQQEPLMEVM 790
                +L  NM+RAPVF HK   TDFLL+RS  G       +R ID + VV Q  P++EV 
Sbjct: 169  EVVPTLYNNMFRAPVFKHKPEPTDFLLIRSTTGGSGSKYYLRNIDHLFVVGQTFPVVEVP 228

Query: 791  SPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECA 850
             P S+ +   S NR+ + VYR    + +R     I VD+++  FP+ +E   R++LKE  
Sbjct: 229  GPHSRKVTNASKNRLKMIVYRLLRKSGRRR----ISVDDITKHFPDQNEMQNRQRLKEFM 284

Query: 851  FLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPA 910
              +R+G  +  W +K    +P E ++R +  PE VC YESMQ G   L+  G        
Sbjct: 285  KYQREGGDQGYWKLKEGETLPDEEEIRAMITPEDVCLYESMQVGQQHLEDAGYNNT---- 340

Query: 911  SISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPS 970
                 +    DE         I+ E ++ PWN + NF+  T         L++ G GDP+
Sbjct: 341  -----IESKRDED---EGEEKIDLEEKLAPWNTTRNFINATQGK----AMLQLHGEGDPT 388

Query: 971  GRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVP 1030
            G G GFS++R + K     +    +    +    V GT A LR        +    +   
Sbjct: 389  GCGEGFSFLRTSMKGGFLKS---GEGPEAKPKKAVAGTKAKLRGGHSYNVAQQQRLY--- 442

Query: 1031 EEMIAKQTRWHRIAM 1045
            EE I +  RW ++++
Sbjct: 443  EEEIRRIWRWQKVSL 457

This domain is found in eukaryotes and is typically between 445 to 462 amino acids in length. Most members are annotated as being transcription initiation factor TFIID subunit 1, and this region is the conserved central portion of these proteins. Length = 457
>gnl|CDD|227506 COG5179, TAF1, Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>gnl|CDD|150052 pfam09247, TBP-binding, TATA box-binding protein binding Back     alignment and domain information
>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family Back     alignment and domain information
>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL Back     alignment and domain information
>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1242
KOG0008 1563 consensus Transcription initiation factor TFIID, s 100.0
PF12157457 DUF3591: Protein of unknown function (DUF3591); In 100.0
COG5179968 TAF1 Transcription initiation factor TFIID, subuni 100.0
PF0924762 TBP-binding: TATA box-binding protein binding; Int 99.51
PF02270275 TFIIF_beta: Transcription initiation factor IIF, b 92.14
KOG0008 1563 consensus Transcription initiation factor TFIID, s 81.12
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-171  Score=1521.55  Aligned_cols=908  Identities=37%  Similarity=0.487  Sum_probs=743.8

Q ss_pred             CCCCchhhhhccccCcchhhhhh-ccCCCCCCCCCCcceEEeeCCeEEEEehhhhccccccccCCcccccccCCccccCC
Q 000877          214 GSLGAEEEMTAGVKDYDEELADI-LKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNT  292 (1242)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~l~~e~g~~il~fseif~~~ep~~~~~~~~~~~~~~~~~~~~  292 (1242)
                      .++..++.|+  +.|++++..++ .-.+++-+..+|||. ++|+   | +|||+|.+|+|. ++.++.-++..+++.|++
T Consensus        15 ~v~~~ed~~d--~~dl~e~~e~~~~~~~~~~~s~~~l~~-~~~~---~-~~s~d~~~~~P~-~~~~~e~~~~~~~D~~~s   86 (1563)
T KOG0008|consen   15 SVLVKEDAMD--YSDLQEESEDEPAEFTLEFGSLTPLPT-YGDE---A-QFSEDFALMEPP-KRDMREDEYIGSRDKYIS   86 (1563)
T ss_pred             cccccccccc--chhhhhhhhcccccccccccCcccCcc-cchh---h-hcchhhhhcCCC-CCCchhhccccccCcccc
Confidence            4556677788  99999998877 667788888999999 9999   4 999999999999 888889999999999999


Q ss_pred             CCcccccchhHHHHhhh-cCCCcccccccccccccccccCccchhhhhhcccc---cccccchhhhccccccccCccccc
Q 000877          293 MDVSSLVEEDEEVYLKG-SGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQ---DAATISEHDEQRKDSCICSEPMKE  368 (1242)
Q Consensus       293 ~~~~~~~e~dee~~lk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~s~~~~~p~~~  368 (1242)
                      +|.+..++++|+..||+ +++..+-.+.+.-.+.++.....+.....+-|+..   ..++...+..--++||+...-.+.
T Consensus        87 ed~~~~~~~~e~t~l~d~d~~~dt~l~~I~~~~ld~~~Pvre~~~d~~~~~vl~~~~~~p~~~f~~~~r~s~~~~~~~~~  166 (1563)
T KOG0008|consen   87 EDSSSLSGPDEETDLKDDDGKLDTPLSGIDSIDLDVPLPVRELFPDFRPSKVLRSRLFGPNKEFMGLWRDSRIMRKKLKQ  166 (1563)
T ss_pred             cccccccCcchhhhhhhhccccCCchhhcccccccCCCchhhhccccCccceeccCCCCccchhhhhhHHHHhhhHhhhh
Confidence            99999999999999999 88876666666666666653322222222333322   222333888899999999999999


Q ss_pred             cccCCCCcCCCCCCCCCcccCCccccccccccCCCccCcCCccccccccccc-h--hhhhhcCcc--cccCCCCcccc--
Q 000877          369 ESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGAD-V--ESALMRGIE--LDTGQNNFHER--  441 (1242)
Q Consensus       369 ~~~~~~~~~~~~~~~~~f~p~~~~~we~~i~w~~s~~~~~~~~~~~~~~~~~-~--~~~~~~~~~--~~~~~~~~~~~--  441 (1242)
                      |+..+....|+|++++..+|+++++|+..|||..+|....+.   |++.+.- +  ...+..|..  =.+++..+--.  
T Consensus       167 d~~~~~~~~~~sqls~~~~~gdk~~~~~~~i~E~~p~~~~~~---~e~~~~g~~~~~g~l~~g~~~~~vt~~~~~v~~~r  243 (1563)
T KOG0008|consen  167 DLIDENSEIGPSQLSMEVEVGDKMEWNLGIIMEPEPEICLAD---DEIKEMGSVESKGLLPPGEPMKKVTEQKPLVIEWR  243 (1563)
T ss_pred             hhcccccccccccccccccccchhhhccCcccCCChHHhccc---hhhhccccccccccCCCCccccccccccccccccc
Confidence            999899999999999999999999999999999999776654   3332221 0  000111200  01111111110  


Q ss_pred             --cCCCCCcccccccCCCCcccccCCCCCCCCCCCcCCcccccccccccccccccccccCccCCCccchh----------
Q 000877          442 --STSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVS----------  509 (1242)
Q Consensus       442 --~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~hp~~lr~e~~~~~~~~~~~~~~~~~~~----------  509 (1242)
                        +.+..-+...  .+.+...++ ||... +-....+.+.++.|||++++|+.     .||....++...          
T Consensus       244 ~gp~~~~y~~~~--vP~~~~~ln-~gfk~-kqs~~~~~~~s~~~~q~~~~e~d-----~~~~~s~~~~~~l~~kqL~~e~  314 (1563)
T KOG0008|consen  244 YGPAQIWYDMMK--VPESGMPLN-FGFKL-KQSPNESANKSRKTPQALSPESD-----ENESDSLRDAIFLSIKQLEWED  314 (1563)
T ss_pred             cccceeeecccc--CCCcCCccc-cchhc-ccCccccccccCCCccccccccc-----ccccccchhhhhhhHhhcchhh
Confidence              2222222222  355666777 88875 34456678889999999999952     122211110000          


Q ss_pred             ---------------------------hh-------hc---------ccccccccccCcccCcccCCCCccceeeccCCC
Q 000877          510 ---------------------------IK-------LC---------QSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVD  546 (1242)
Q Consensus       510 ---------------------------~~-------~~---------~~~~~~r~s~~~~~N~dL~~g~Wld~IiWD~~~  546 (1242)
                                                 ..       ++         +..-..-|++||+.|-+|.+..|.++||||+..
T Consensus       315 ~v~~~g~~~~~k~~~~~~~~~~~gWd~~~i~tr~~~~f~~~d~~m~~~i~d~~~~~~~~~~~~~li~~~we~~~i~Daq~  394 (1563)
T KOG0008|consen  315 DVRKDGEDVKDKVLEDENWLDLDGWDPNKIYTRNALAFNLQDSSMTFNIPDNKGYKIFPLHNDSLIYSRWEDDIIWDAQA  394 (1563)
T ss_pred             hcccchHHHHHhhhhhcccccccccccccccccchhhhcccccccccccCCCccccccccccchhhhchhhhheeechhh
Confidence                                       00       00         011123477899999999999999999999954


Q ss_pred             CCC---CCceeecCCCCcceeecccCCCCCc----------------------------------------ccccccccc
Q 000877          547 AVG---KPKLILDLQDEQMLFEILDNKDDEH----------------------------------------PLLHAGAMI  583 (1242)
Q Consensus       547 ~~~---k~KLiLDlnD~nmifei~d~kd~~~----------------------------------------l~~~A~~~~  583 (1242)
                      ...   ...|.|| ||+++||++++.+...+                                        +++..|..+
T Consensus       395 ~~s~~~~~~l~L~-nD~~Lilg~~~~k~qa~~kk~~~~~~~~~~~lk~K~lls~d~~~~~~~~~~q~k~~k~rltvg~~~  473 (1563)
T KOG0008|consen  395 MPSSLSPWVLNLD-NDENLILGIPDDKRQAKQKKSSKHSKRVFHSLKSKFLLSNDGKYQNLKQDHQSKGGKVRLTVGGLE  473 (1563)
T ss_pred             ccCCCCCceEEec-CChhhhcCCcccchhcccCCCccccccccchhhhhhhhcchHHhhhhhhcccccccceeeeccccc
Confidence            322   2358888 99999999998887422                                        122334445


Q ss_pred             ccCCCCCCCC-CCcc---ccccccccccccccccccccccCCCccccccccccccCcccccCCCCCCCCCCCCCCcccCC
Q 000877          584 ITRSAKPSDF-KPAE---SVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSD  659 (1242)
Q Consensus       584 i~~~~K~~~~-~P~~---~~klfY~gkel~~~~sl~~~~VrP~sl~h~~R~k~~~~pka~r~pg~~kslrp~gaFkk~sD  659 (1242)
                      |-|+.++..+ -|++   ..+++|.+.....-++++..+++|+++.|+.++..|.|+++++.++..++++++++|....|
T Consensus       474 IqHS~pA~~Lr~pFykT~~~k~~lR~fHRp~~k~~~~~~~qp~~~~~vf~~lkh~kr~a~kr~~er~s~~~~~~ftmrdD  553 (1563)
T KOG0008|consen  474 IQHSLPAVNLRLPFYKTHMSKMKLRGFHRPPFKSRISGAVQPNSPHHVFSPLKHRKRKADKREGERESIGGGGEFTMRDD  553 (1563)
T ss_pred             eeecchhhhccCCcccccccHHHHhhccCCchhhccccccCCCCcccccchHHHHHHHHhhCccchhccCCccceEeccc
Confidence            5555555433 2333   34456677766666788999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEEEEeeccCCccccCCCcccccccccCCCCCCCCcccccccCCCCCCceEEcCCCCC--CCcceecCCCCce
Q 000877          660 LSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDK--SPFLGDIKAGCSQ  737 (1242)
Q Consensus       660 LSlkDG~lVLmEYsEE~PpLLSNvGMgSkIiNYYRKk~~~D~~~~~lr~~k~~lGe~vvL~p~D~--SPFLG~V~PGqtv  737 (1242)
                      ||.+||++||||||||||++|||+||||+|+|||||+++.|+.+|.     .+.|+.++|.++|+  |||||.|+|||.+
T Consensus       554 Lsgkdg~v~L~EYsEE~P~~Lsn~GMaskl~nYYrK~n~~D~~~~~-----~~d~~~~vl~~eh~sp~pflG~vhPG~s~  628 (1563)
T KOG0008|consen  554 LSGKDGHVILMEYSEEHPVLLSNAGMASKLKNYYRKKNEQDEYRPK-----LPDGEYGVLDVEHTSPSPFLGSVHPGQSL  628 (1563)
T ss_pred             ccCCCCCEEEEEecccCchhhccchHHHHHHHHHhccCccccccCC-----CCcccceeEeecCCCCCCcccccCCCcch
Confidence            9999999999999999999999999999999999999999998743     46777777778887  7779999999999


Q ss_pred             eeeecccccCCCCCCCCCCceEEEEEcCCCc--EEEEecCceeeccccccccccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 000877          738 SSLETNMYRAPVFTHKVATTDFLLVRSAKGK--ISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSA  815 (1242)
Q Consensus       738 ~tLeNNMfRAPIFkHk~~~TDFLLIRS~~Gk--~yIReId~LfvVGQ~eP~vEVP~PhSKkvt~f~KNRLkv~iyRlf~k  815 (1242)
                      |+|||||||||||+|++.+||||||||++|+  ||||+|++|||||||||++|||+||||++|+|++|||+|||||+||+
T Consensus       629 qaleNNMyRAPIF~Hk~~~TDfLLiRS~~g~~r~ylR~In~IfvVGQq~Pl~EVpgPnSKk~tt~~~nrLkv~IYRlF~~  708 (1563)
T KOG0008|consen  629 QALENNMYRAPIFKHKMQSTDFLLIRSSSGKMRYYLRNINHIFVVGQQFPLEEVPGPNSKKLTTFLRNRLKVFIYRLFWK  708 (1563)
T ss_pred             HHHhhcchhcccccccCCCCcEEEEecCCCCceEEEeccCcEEEecccccccccCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999886  99999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCcccHhHHhhhCCCCcHHHHHHHHHHhhcccccCCCceeEEecCCCCCCChHHhhhhCChhhhHHHHHHHHHH
Q 000877          816 AAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGL  895 (1242)
Q Consensus       816 ~~~~~~~~rIrv~DI~k~FP~~sE~qIRKRLKEcad~qR~g~g~g~W~lKp~~rLPsEEELR~mITPE~VCayESMqAG~  895 (1242)
                      +..  .++||+|++|++|||+++|++||||||+||+|+|+|++.+||++|++|++|+|++||+|||||+||+||||+||+
T Consensus       709 s~~--g~r~I~id~lsk~Fp~~se~siRKrLKecad~kR~G~~~~~W~LK~df~lp~eeelrslVtPE~vCayeSMlAge  786 (1563)
T KOG0008|consen  709 SDS--GPRRIRIDDLSKAFPDQSESSIRKRLKECADFKRDGMGKNYWVLKPDFRLPDEEELRSLVTPEQVCAYESMLAGE  786 (1563)
T ss_pred             cCC--CCcceehhHHHhhCcccchHHHHHHHHHHHHHhhcCCCCCeeEecccccCCCHHHHhhhcCHHHHHHHHHHHHHH
Confidence            854  568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccCccchhhhhccCchHHHHHHHhhhHHHHHhcCcchhhHHHHH-HhhcCcccceeeeeeccCCCCCCCc
Q 000877          896 YRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVA-CTNQDRENIERLEITGVGDPSGRGL  974 (1242)
Q Consensus       896 qRLkDaGy~~lt~~~~is~a~~ql~DE~~~~~~a~~IE~ELqLAPWNlTrNFv~-At~QgKa~i~mLqL~G~GDPTGrGE  974 (1242)
                      |||+|+||+....     .+..++++|    +++.+|++|+++||||||+|||+ |+ |||   |||+|||+||||||||
T Consensus       787 qrLkDaGyg~~~~-----~a~e~ddeE----~~~~~ie~E~~~aPWNtTrnFInqa~-~gk---~lLeltGvgDPTGcGe  853 (1563)
T KOG0008|consen  787 QRLKDAGYGEKYF-----FAPESDDEE----AAQSKIEDEVQLAPWNTTRNFINQAT-QGK---CLLELTGVGDPTGCGE  853 (1563)
T ss_pred             HHHHhcCcchhhc-----ccccccchh----hhhhcchhhhccCcchhhHHHHHHHh-ccc---eeEEeecCCCCCcccC
Confidence            9999999987432     234445555    57899999999999999999995 76 677   6999999999999999


Q ss_pred             eeEEEEcCCCccchhHHHHhHHhhhCCCCcccccchhhhccCHHHHHHHHHhCCCCHHHhhccCchhhhHHHHHhhHHHH
Q 000877          975 GFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQA 1054 (1242)
Q Consensus       975 GFSfIR~s~K~~~~~~~~kkka~~~rg~~~VTGTDADLRKLSM~eAR~iLrkfGVpEE~IkkLtRWdrIaLVRkLSsEqA 1054 (1242)
                      ||||||++.|+..+..  .+++++.  .++|||||||||||+|..|+++|++|||+||+|++++||+||+|||++|+|+|
T Consensus       854 GFSyvRip~kpt~~k~--~~k~a~~--~~tvTgtdaDlrrl~~~~A~~vl~qf~v~EEeIak~trwe~i~~ir~~stE~A  929 (1563)
T KOG0008|consen  854 GFSYVRIPNKPTSMKE--GKKPAPA--KKTVTGTDADLRRLSLKAAKEVLRQFGVPEEEIAKLTRWERIDVIRTLSTEQA  929 (1563)
T ss_pred             cceeEeccCCcccccc--ccccCCc--cCcccCCCcccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhchHHHH
Confidence            9999999999876643  2233332  37999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh-----------------HHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC-CCchhhHHHhHHHhhhhhhhh
Q 000877         1055 ASGV-----------------QLQQQTRGKCQEIWDRQVQSLSA---ADDDEIGSDSE-HSDLDSFAGDLENLLDAEEFE 1113 (1242)
Q Consensus      1055 asGv-----------------e~QqqYkEecq~Ifd~Q~~sLSs---~d~De~eS~~e-~sD~d~~~~dlE~~L~a~~~~ 1113 (1242)
                      ++|.                 ++|++||++||+||++|++.|++   .++|+++|+.+ ++|+|++++|||+||++++++
T Consensus       930 ks~~~~t~~~~f~rgnr~s~~e~qe~~re~cqri~d~qN~il~s~~~~~tD~~~s~a~~~sd~E~~~~~le~lL~~~kg~ 1009 (1563)
T KOG0008|consen  930 KSGGHETIMDKFARGNRFSFAERQEDYREKCQRIFDRQNGILESTEVFSTDPNESQAEEDSDLEEDGKDLENLLEAKKGK 1009 (1563)
T ss_pred             hcCCCCchhhhhhccccchhhhhhhHHHHHHHHHHHHhhcchhcccccccCCccchhhhhhhHHHhHHHHHHHhhccccc
Confidence            9982                 78999999999999999888876   45999999875 999999999999999999998


Q ss_pred             hccccccccccccccccccc-cccchhhhhhhHhHhHHHHHHHHHHHHhhhhhH
Q 000877         1114 EEESNYDTKHDKVEGVKGLK-MRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDE 1166 (1242)
Q Consensus      1114 ~~e~~~~~k~~~~~g~~gl~-~rr~~~~~q~~e~~e~E~~E~~eL~rll~~d~~ 1166 (1242)
                      +.++....+..+.+++++|+ +||++.++...+++++++.+++++++.+++...
T Consensus      1010 e~~~re~e~~eke~~~~~l~~~~~~~~~~ak~~~~~d~a~~~~~~~~~~~~~~~ 1063 (1563)
T KOG0008|consen 1010 EAESREREEQEKEDLKRLLNQERRQPRSVAKDEEIKDNASEYALNSSNLSQLLK 1063 (1563)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhhhchhhhcc
Confidence            87777888889999999999 999999988889999999999999998876553

>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1 Back     alignment and domain information
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>PF09247 TBP-binding: TATA box-binding protein binding; InterPro: IPR009067 In eukaryotes, the general transcription factor TFIID helps to regulate transcription by RNA polymerase II from class II promoters Back     alignment and domain information
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1242
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 4e-05
1we6_A111 Splicing factor, putative; structural genomics, ub 4e-05
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 6e-05
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 8e-05
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 8e-05
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 1e-04
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 1e-04
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 2e-04
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 2e-04
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 2e-04
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 3e-04
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 3e-04
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 4e-04
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 5e-04
3m62_B106 UV excision repair protein RAD23; armadillo-like r 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 79.1 bits (194), Expect = 7e-15
 Identities = 108/650 (16%), Positives = 190/650 (29%), Gaps = 190/650 (29%)

Query: 392 HDWEENIVWD-------NSPAASDNSIESHEIAGA-DVESALMR--GIELDTGQN---NF 438
             +E+  V +       + P +  +  E   I  + D  S  +R     L   +     F
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 439 HERSTSPNEK---DCIVNMQNSPVL-SETFGS-KSSSDNTSHLFTESRYHPQLLRLESQL 493
            E     N K     I   Q  P + +  +   +    N + +F  ++Y+  + RL+  L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYN--VSRLQPYL 138

Query: 494 DLDNH----SHANGI---------KENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNI 540
            L         A  +         K  V++ +C S  V+            M+      I
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----------KMDF----KI 184

Query: 541 IWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPS--------- 591
            W  +     P+ +L++   Q L   +D          +   +   S +           
Sbjct: 185 FWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 592 ---------DFKPAESVKLFYLG-KEL---EDHKSLADQNVRPNSLIHLIRTKIHLLPRA 638
                    + + A++   F L  K L      K + D       L     T I L   +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTD------FLSAATTTHISLDHHS 295

Query: 639 QKL-PGENKSLRPPGAFKKKSDLSVKDGHVFL-MEYCEERPLLLSNAGMGANL----CT- 691
             L P E KSL       K  D   +D    L  E     P  LS   +  ++     T 
Sbjct: 296 MTLTPDEVKSL-----LLKYLDCRPQD----LPREVLTTNPRRLS--IIAESIRDGLATW 344

Query: 692 -YYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSP-------FLGDIKAGCSQSSLE-- 741
             ++  +  D+   ++    + L     LEP +          F            L   
Sbjct: 345 DNWKHVN-CDKLTTII---ESSLNV---LEPAEYRKMFDRLSVFPPSAHI--PTILLSLI 395

Query: 742 -TNM--YRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQ 798
             ++      V  +K+     +  +  +  ISI  I         E  +       K   
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------YLELKV-------KLEN 441

Query: 799 TYSINRMLVNVYREFSAAAKRGLLP----------------CIGVDELSVQFPN--LSEA 840
            Y+++R +V+ Y          L+P                 I   E    F    L   
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 841 IIRKKLKECAFLRRDG-NGKQVWSMKRTFHIPSEGDLRKLAYPEHVC----SYESM---- 891
            + +K      +R D        S+  T        L+   Y  ++C     YE +    
Sbjct: 502 FLEQK------IRHDSTAWNASGSILNTLQ-----QLKF--YKPYICDNDPKYERLVNAI 548

Query: 892 -------QAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIER 934
                  +  L   K+  + ++ L            DEAI   A   ++R
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIAL---------MAEDEAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111 Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85 Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1242
d2bwfa173 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc 7e-06
d1uela_95 d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol 1e-05
d1oqya477 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h 6e-05
d1bt0a_73 d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t 9e-05
d1x1ma194 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse 2e-04
d1z2ma276 d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot 2e-04
d2zeqa178 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin 4e-04
d1wh3a_87 d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like 5e-04
d1zkha186 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t 5e-04
d1wgha_116 d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous 0.001
d1ogwa_76 d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax 0.001
d1tbaa_67 a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fru 0.002
d1wgda_93 d.15.1.1 (A:) Homocysteine-responsive endoplasmic 0.004
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTK 631
           P  + +L Y GK L+D +++   +++    +HL++++
Sbjct: 37  PVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 73
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1242
d1tbaa_67 TAF(II)230 TBP-binding fragment {Fruit fly (Drosop 98.37
d2bbya_69 DNA-binding domain from rap30 {Human (Homo sapiens 94.97
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: TAF(II)230 TBP-binding fragment
superfamily: TAF(II)230 TBP-binding fragment
family: TAF(II)230 TBP-binding fragment
domain: TAF(II)230 TBP-binding fragment
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=3.6e-09  Score=76.23  Aligned_cols=50  Identities=28%  Similarity=0.510  Sum_probs=45.6

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHH-HHCCCCCCCCC
Q ss_conf             689731024662035898998631---------011889999999996-42697201223
Q 000877           25 VSGGNRLLGFMFGNVDYAGDLDVD---------YLDEDAKEHLAAVAD-KLGPSLTDIDV   74 (1242)
Q Consensus        25 ~~~~~~~~gf~fgn~~~~g~l~~~---------~ld~~~k~hl~~~~~-~lg~~~~~i~~   74 (1242)
                      -|+|..|+||||||||..|+|+.|         +||+++|+||+.|+. +|++.|++|..
T Consensus         4 ig~~~~LtGfLFGNId~~G~Le~Dd~~~g~~~s~lD~E~k~~L~~Ls~lGL~sll~Ev~~   63 (67)
T d1tbaa_           4 IGNGLDLTGILFGNIDSEGRLLQDDDGEGRGGTGFDAELRENIGSLSKLGLDSMLLEVID   63 (67)
T ss_dssp             SSCSCCCTTHHHHCEETTTEECCSSCCCSSSCSSCCTTTHHHHTTCTTTTHHHHHHTSCC
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             677711012244142777755356333444331028999998988865118889999873
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure