BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000878
(1241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2.
Northeast Structural Genomics Consortium (Nesg) Target
Ht2a
Length = 137
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 986 EKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGP 1045
E+ GCEHY R C ++A CC KL+TCR CHD DH +DR E+ C++C KIQ
Sbjct: 14 ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1046 NCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGL 1105
C S +YYC+IC FD ++ YHC C +CR+G DFFHC+ CN CL +
Sbjct: 74 TCEECS---TLFGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1106 KLLN-HKCL 1113
L HKC+
Sbjct: 129 NLQGRHKCI 137
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring
Finger And Chy Zinc Finger Domain-Containing Protein 1
From Mus Musculus
Length = 143
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 991 GCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTP 1050
GCEHY R C ++A CC KL+TCR CHD DH +DR E+ C++C K+Q C
Sbjct: 18 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCE-- 75
Query: 1051 SCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLN- 1109
C+ L +YYC+IC FD ++ YHC C +CR+G DFFHC+ CN CL L
Sbjct: 76 DCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGK 132
Query: 1110 HKCLE 1114
HKC+E
Sbjct: 133 HKCIE 137
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2.
Northeast Structural Genomics Consortium (Nesg) Target
Ht2c
Length = 79
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 1168 DMAIYFGMIDXXXXXXXXXXXYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNT 1224
DM Y+ +D Y+N DILCNDC + +FH L KC C SYNT
Sbjct: 10 DMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And
Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 1119 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS 1163
+ CPIC + + TS LPCGH +H C++ Y CP+CS
Sbjct: 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKS 1165
+ NCPIC + + TS LPCGH +H C++ Y CP+C S
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + + E+VR LPC H H +C + H +CP+C KSL
Sbjct: 18 CPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
E CPICC + + LPC HY H C + TCP+C
Sbjct: 40 EMCCPICCS-EYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38
Length = 75
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 1118 ETNCPIC-CDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1167
+T C +C CDF S + +R LPC H H C + ++ TCPIC G
Sbjct: 23 QTLCVVCMCDF--ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1121 CPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPIC 1162
C +C L E R LP CGH H C + SH TCP+C
Sbjct: 8 CAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
C IC L E VR LPC H H C + ++ CPIC
Sbjct: 16 KCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLITNKKCPIC 57
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 641 SYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQ-----FIGRFRLLWG 695
SY +++ E PI+ +FK K+I E + ++ +D LR+ F+G R L
Sbjct: 165 SYHIITIEDPIEYVFKHKKSIVNQRE-VGEDTKSFADALRAALREDPDVIFVGEMRDLET 223
Query: 696 LYRAHSNAED-EIVFPALESKEA---LHNVSHSYTLDHKQEEKL 735
+ A AE +VF L + A +H + + L+ +++ ++
Sbjct: 224 VETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRI 267
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From Tripartite
Motif-containing Protein 31
Length = 73
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAY---TCSHYTCPICSKSLGDMAI 1171
E CPIC D L + + CGH L C +C + CP+C S+ AI
Sbjct: 20 EVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 641 SYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQ-----FIGRFRLLWG 695
SY +++ E PI+ +FK K+I E + ++ +D LR+ F+G R L
Sbjct: 154 SYHIITIEDPIEYVFKHKKSIVNQRE-VGEDTKSFADALRAALREDPDVIFVGEXRDLET 212
Query: 696 LYRAHSNAED-EIVFPALESKEA---LHNVSHSYTLDHKQEEKL 735
+ A AE +VF L + A +H + + L+ +++ ++
Sbjct: 213 VETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRI 256
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 641 SYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQ-----FIGRFRLLWG 695
SY +++ E PI+ +FK K+I E + ++ +D LR+ F+G R L
Sbjct: 165 SYHIITIEDPIEYVFKHKKSIVNQRE-VGEDTKSFADALRAALREDPDVIFVGEXRDLET 223
Query: 696 LYRAHSNAED-EIVFPALESKEA---LHNVSHSYTLDHKQEEKL 735
+ A AE +VF L + A +H + + L+ +++ ++
Sbjct: 224 VETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRI 267
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 641 SYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQ-----FIGRFRLLWG 695
SY +++ E PI+ +FK K+I E + ++ +D LR+ F+G R L
Sbjct: 54 SYHIITIEDPIEYVFKHKKSIVNQRE-VGEDTKSFADALRAALREDPDVIFVGEXRDLET 112
Query: 696 LYRAHSNAED-EIVFPALESKEA---LHNVSHSYTLDHKQEEKL 735
+ A AE +VF L + A +H + + L+ +++ ++
Sbjct: 113 VETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRI 156
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 848 DEQSKLIDTWKHATKNTMFNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDL 907
D S+ + ++ + + +W D+ W+G E ANIS+ D+ + + LD+
Sbjct: 238 DMYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYY-------ANISYLDAQVGKVLDKIKA 290
Query: 908 MFKPGWKD----IFRMNQNELEAEIRKVY 932
M G +D IF + + E RKVY
Sbjct: 291 M---GEEDNTIVIFTSDNGPVTREARKVY 316
>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide
pdb|3P1S|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
pdb|3SPR|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fc-Thf
pdb|3SMK|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Cotylenin A
Length = 236
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 753 LPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGE 801
L + + + ++ S + G + R ++ T+LQG+C ++ LD H++ E
Sbjct: 67 LSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (10mer)
pdb|3IQU|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer)
pdb|3IQV|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer) And Stabilisator Fusicoccin
pdb|3MHR|A Chain A, 14-3-3 Sigma In Complex With Yap Ps127-Peptide
Length = 236
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 753 LPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGE 801
L + + + ++ S + G + R ++ T+LQG+C ++ LD H++ E
Sbjct: 67 LSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide
Length = 253
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 753 LPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGE 801
L + + + ++ S + G + R ++ T+LQG+C ++ LD H++ E
Sbjct: 67 LSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,814,289
Number of Sequences: 62578
Number of extensions: 1320389
Number of successful extensions: 3258
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3226
Number of HSP's gapped (non-prelim): 46
length of query: 1241
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1131
effective length of database: 8,089,757
effective search space: 9149515167
effective search space used: 9149515167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)