BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000878
(1241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 11/308 (3%)
Query: 921 QNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGE-EGLDCY 979
Q+ + +I ++ L +RKA L Q ++ S ++ K + ES + + D
Sbjct: 74 QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYL----KYRRTHKKESDENQLSSSDLE 129
Query: 980 ASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLK 1039
+Y D E+++ GC HY RNCK++ C + +TCR CH+ A DH ++R A M+CM C K
Sbjct: 130 KTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSK 189
Query: 1040 IQAIGPNCTTPSCNGLSMAKYYCNICKFFDDE--RTVYHCPFCNLCRVGGGLGVDFFHCM 1097
+Q C C M +YYCN CK +DD+ ++ YHC C +CR+G GLG D+FHC
Sbjct: 190 VQPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCK 246
Query: 1098 TCNCCLGLKLLN-HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH 1156
TC CL + + N H+C+E+ + NCPIC +++F S E V L C H +H C + Y ++
Sbjct: 247 TCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN 306
Query: 1157 YTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKC 1216
Y CP C K++ ++ F ++D + + +P Y + I CNDC + ++H+L HKC
Sbjct: 307 YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKC 366
Query: 1217 GFCGSYNT 1224
C SYNT
Sbjct: 367 NSCHSYNT 374
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 136/240 (56%), Gaps = 6/240 (2%)
Query: 986 EKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGP 1045
E+ GCEHY R C ++A CC KL+TCR CHD DH +DR E+ C++C KIQ
Sbjct: 14 ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1046 NCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGL 1105
C C+ L +YYC+IC FD ++ YHC C +CR+G DFFHC+ CN CL +
Sbjct: 74 TC--EECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGPK--EDFFHCLKCNLCLAM 128
Query: 1106 KLLN-HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSK 1164
L HKC+E NCPIC + + TS LPCGH +H C++ Y CP+C
Sbjct: 129 NLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 188
Query: 1165 SLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNT 1224
S DM Y+ +D +A +P EY+N DILCNDC + +FH L KC C SYNT
Sbjct: 189 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 248
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 133/235 (56%), Gaps = 6/235 (2%)
Query: 991 GCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTP 1050
GCEHY R C ++A CC KL+TCR CHD DH +DR E+ C++C K+Q C
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCE-- 76
Query: 1051 SCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLN- 1109
C+ L +YYC+IC FD ++ YHC C +CR+G DFFHC+ CN CL L
Sbjct: 77 DCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGK 133
Query: 1110 HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1169
HKC+E NCPIC + + TS LPCGH +H C++ Y CP+C S DM
Sbjct: 134 HKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDM 193
Query: 1170 AIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNT 1224
Y+ +D +A +P EY+N DILCNDC + +FH L KC C SYNT
Sbjct: 194 TRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNT 248
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + +T E+VR LPC H H C + H TCP+C KSL
Sbjct: 228 CPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + +T E+VR LPC H H C + H TCP+C KSL
Sbjct: 227 CPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 1114 EKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYF 1173
EK L+++C C + ++T+R LPC H H C + H TCP+C D+ ++
Sbjct: 295 EKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKL---DVLKFY 351
Query: 1174 GMIDALLAAEELPEEYR 1190
G + L +EE EY+
Sbjct: 352 GYV--FLGSEESILEYQ 366
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + +T E VR LPC H H C + H TCP+C KSL
Sbjct: 228 CPVCKED-YTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + +T E VR LPC H+ H +C + H TCP+C KSL
Sbjct: 229 CPVCKE-DYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C D + E VR LPC H H C + H +CP+C KSL
Sbjct: 229 CPVCKDD-YALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + +T E VR LPC H+ H +C + H TCP+C KSL
Sbjct: 228 CPVCKE-DYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C + + E+VR LPC H H +C + H +CP+C KSL
Sbjct: 231 CPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C D + E VR LPC H H C + H +CP+C KSL
Sbjct: 232 CPVCKDD-YGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1
SV=2
Length = 398
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1118 ETNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSLGD 1168
E C IC + F ET+R LP C H H C A+ +H TCP+C +L +
Sbjct: 125 ELECAICLN-EFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAE 175
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 1105 LKLLNHKCLEKCLE-TNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPIC 1162
+ + N+K + +E T+CP+C + F E++R LP C H H++C + SH CP+C
Sbjct: 160 ITICNYKRGDGLIERTDCPVCLN-EFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
Query: 1163 SKSLGDMAI 1171
+ +++
Sbjct: 219 RAGIAMISV 227
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 1118 ETNCPICCDFLFTSSETVRA------LPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
++ C IC D + ++ET + LPCGH +H C +++ TCPIC S+
Sbjct: 317 DSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPICRLSV 371
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDAL 1179
NC +C + + ++ VR LPC H H C + H TCP+C ++ G+ +
Sbjct: 266 NCAVCIEG-YKPNDVVRILPCRHLFHKCCVDPWLVDHRTCPMCKMNILKA---LGLTSSA 321
Query: 1180 LAAEELPEEYRNQVQDILCN 1199
ELP +Y V + N
Sbjct: 322 ECLNELPLDYELAVGGVALN 341
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1115 KCLETNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSL 1166
K T C IC F E VR LP C H H++C + SH +CP C SL
Sbjct: 99 KIAATECAICLG-EFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLG 1167
NC +C + F + +R LPC H H C + H TCP+C K+LG
Sbjct: 268 NCAVCIEN-FKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALG 318
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
E NC +C D ++ + VR L C H H AC + +H TCP+C
Sbjct: 253 EDNCVVCFD-IYKPQDVVRILTCKHIFHKACIDPWLLAHRTCPMC 296
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
E NC +C D + + VR L C H+ H AC + +H TCP+C
Sbjct: 255 EDNCVVCFD-TYKPQDVVRILTCKHFFHKACIDPWLLAHRTCPMC 298
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 1121 CPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSLGD 1168
C IC + F ET+R LP C H H C A+ H TCP+C +L +
Sbjct: 124 CAICLN-EFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAE 171
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 1120 NCPIC-CDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSL 1166
+CP+C C+F + + +R LP C H H+ C + SH TCP+C +L
Sbjct: 125 DCPVCLCEF--ETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNL 171
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1
SV=2
Length = 223
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1119 TNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSLGD 1168
T+C IC + T E R+LP C H HL C + H +CPIC +++ D
Sbjct: 174 THCTICLQDIKTG-EITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAVKD 223
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1 SV=3
Length = 578
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
CPICC + E LPC HY H C + TCP+C
Sbjct: 530 CPICCS-EYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVC 570
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1 SV=2
Length = 643
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
CPICC + E LPC HY H C + TCP+C
Sbjct: 595 CPICCS-EYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVC 635
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2
SV=1
Length = 221
Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 1120 NCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSL 1166
+C +C F ETVR+LP C H HL C + H +CP+C + L
Sbjct: 175 SCSVCLQD-FQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 221
>sp|O60140|YNS9_SCHPO Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.09 PE=4 SV=2
Length = 495
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 991 GCEHYKRNCK-IRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTT 1049
CEHYK++ + R +CC +++ C CHD +H+ + + ++C +C + T
Sbjct: 395 ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHTFEH--ANRIICGYCAMESFYKKDATC 452
Query: 1050 PSCNGLSMAK 1059
P C +++ K
Sbjct: 453 PHCGNMTVKK 462
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAY--TCSHYTCPICSKSLGDMAIYFGMIDA 1178
C IC DF F S V A+ CGH HL C + T TCP C +G I +
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKKTIINKLFFD 65
Query: 1179 LLAAEE 1184
L EE
Sbjct: 66 LAQEEE 71
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLG 1167
NC +C + + ++ VR LPC H H +C + H TCP+C K+LG
Sbjct: 276 NCAVCIEG-YKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALG 326
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAY--TCSHYTCPICSKSLGDMAIYFGMIDA 1178
C IC DF F S V A+ CGH HL C + T TCP C +G I +
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFFD 65
Query: 1179 LLAAEE 1184
L EE
Sbjct: 66 LAQEEE 71
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1121 CPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSL 1166
C IC + L ETVR LP C H H+ C + SH TCP+C +L
Sbjct: 124 CAICLNEL-EDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS 1163
+CPIC D T ++T LPC H L C Q +T + CP+C+
Sbjct: 45 DCPICLDVAATEAQT---LPCMHKFCLDCIQRWTLTSTACPLCN 85
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFG 1174
NC +C + F + +R LPC H H C + H TCP+C + Y+G
Sbjct: 264 NCAVCIEN-FKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWG 317
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLG 1167
NC +C + + ++ VR LPC H H +C + H TCP+C K+LG
Sbjct: 277 NCAVCIEG-YKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALG 327
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1 SV=2
Length = 707
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 1105 LKLLNHKCL--EKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
L L +H + E+C CPICC + + LPC H+ H C + TCP+C
Sbjct: 619 LVLEDHTAIGQEQC----CPICCS-EYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVC 673
Query: 1163 SKSLGDMAIYFGMIDALLAAEELPE 1187
+ +IDA AA P+
Sbjct: 674 RRHF-----PPAVIDASAAASSDPD 693
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 1119 TNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSL 1166
T C IC F ETVR LP C H H+ C + SH +CP C +SL
Sbjct: 111 TECLICLGD-FVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2 PE=2
SV=1
Length = 707
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 1105 LKLLNHKCL--EKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
L L +H + E+C CPICC + + LPC H+ H C + TCP+C
Sbjct: 619 LVLEDHTAIGQEQC----CPICCS-EYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVC 673
Query: 1163 SKSLGDMAIYFGMIDALLAAEELPE 1187
+ +IDA AA P+
Sbjct: 674 RRHF-----PPAVIDASAAASSEPD 693
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLGDMAIYFGM 1175
+C IC + + ++ VR L C H+ H C + H TCPIC K LG +
Sbjct: 255 SCVICFE-RYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICKCDILKVLGIQVVVENG 313
Query: 1176 IDAL--LAAEELPE 1187
+ L L + ELPE
Sbjct: 314 TEPLQVLMSNELPE 327
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
CP+C F ETVR LPC H H AC + +CP+C L
Sbjct: 78 KCPVCL-LEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHEL 123
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLG 1167
NC +C + + + + VR LPC H H C + H TCP+C K+LG
Sbjct: 263 NCAVCIEN-YKTKDLVRILPCKHIFHRLCIDPWLIEHRTCPMCKLDVIKALG 313
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1114 EKCLETNCPICCDFLFTSSET-VRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
++ ++ CPIC D + + E +PCGH C Q + +H TCP+C K +
Sbjct: 100 DQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>sp|G3X9R7|RN148_MOUSE RING finger protein 148 OS=Mus musculus GN=Rnf148 PE=2 SV=1
Length = 316
Score = 41.6 bits (96), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1118 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
E +C +C D ++ + + +R L C H+ H C + +H TCP+C
Sbjct: 266 EDSCVVCFD-MYKAQDVIRILTCKHFFHKTCIDPWLLAHRTCPMC 309
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1110 HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
H E ET C +C D+ F + + +R LPC H H C + TCP+C
Sbjct: 317 HSLPEPGTET-CAVCLDY-FCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLC 367
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 1120 NCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDA 1178
+C +C + F+ ++ +R LP C H HL C + S+ TCP+C +SL + + +
Sbjct: 206 DCAVCLN-EFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSET 264
Query: 1179 LLAAEELPEEYRNQVQD 1195
L+A P QV D
Sbjct: 265 LVA----PLSGHQQVDD 277
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
+C IC D S + R LPCGH H +C +++ +CP C SL
Sbjct: 340 DCAICWD----SMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
+C IC D S + R LPCGH H +C +++ +CP C SL
Sbjct: 340 DCAICWD----SMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 40.8 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPIC 1162
C +C D+ F + + +R LPC H H C + TCP+C
Sbjct: 325 CAVCLDY-FCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLC 365
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1120 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICS----KSLG 1167
+C +C + + S+ VR L C H+ H C + H TCP+C KSLG
Sbjct: 259 SCAVCIE-PYKPSDVVRILTCNHFFHKNCIDPWLLEHRTCPMCKCDILKSLG 309
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1121 CPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1166
C +C +T +R LPC H H+ C + + TCPIC +++
Sbjct: 570 CSVCI-TEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|P09108|RAPSN_TORCA 43 kDa receptor-associated protein of the synapse OS=Torpedo
californica GN=RAPSN PE=1 SV=3
Length = 412
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1110 HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKS 1165
H+C+E +E C +C + + + ++ALPC H HL C Q T + CP C +S
Sbjct: 353 HECMED-MELYCGLCGESIGDQNSQLQALPCSHLFHLKCLQ--TNGNRGCPNCKRS 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,782,095
Number of Sequences: 539616
Number of extensions: 18463619
Number of successful extensions: 51236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 51012
Number of HSP's gapped (non-prelim): 371
length of query: 1241
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1112
effective length of database: 121,958,995
effective search space: 135618402440
effective search space used: 135618402440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)