Query 000878
Match_columns 1241
No_of_seqs 556 out of 2174
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:57:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000878.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_647-651//hhsearch_pdb/000878hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 368.3 8.1 138 977-1119 4-142 (143)
2 2k2d_A Ring finger and CHY zin 1.0 1 1 174.3 2.6 72 1159-1230 1-72 (79)
3 2p0n_A Hypothetical protein NM 1.0 1 1 140.8 16.5 153 36-191 12-169 (172)
4 3cax_A Uncharacterized protein 1.0 1 1 135.8 15.3 153 38-190 7-166 (369)
5 2p0n_A Hypothetical protein NM 1.0 1 1 111.2 7.4 155 647-830 14-171 (172)
6 2ecl_A Ring-box protein 2; RNF 1.0 1 1 93.1 4.0 49 1118-1167 26-75 (81)
7 2l0b_A E3 ubiquitin-protein li 1.0 1 1 89.2 4.4 51 1117-1168 39-89 (91)
8 3cax_A Uncharacterized protein 1.0 1 1 88.9 8.5 146 649-821 9-160 (369)
9 1v87_A Deltex protein 2; ring- 1.0 1 1 88.5 5.0 55 1115-1169 22-95 (114)
10 1x4j_A Ring finger protein 38; 1.0 1 1 88.4 3.7 53 1116-1169 21-73 (75)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=368.31 Aligned_cols=138 Identities=41% Similarity=0.990 Sum_probs=132.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78898779657867874521132221242387325900006558998781235610035544224569989998888975
Q 000878 977 DCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLS 1056 (1241)
Q Consensus 977 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~i~C~~C~~~q~~~~~C~~~~Cc~~~ 1056 (1241)
|-.|+|+|++++++||+||+|+|+|+||||++|||||+||||.++|+++|+.+++|+||.|+++||+++.|++ |+..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~---Cg~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED---CSTL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS---SCCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCC---CCCC
T ss_conf 8888643434576788366888617888789814614420334556643110504442356760654673887---7862
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 216965633465589981037999844337977744301478653335554-433212355688
Q 000878 1057 MAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLEKCLET 1119 (1241)
Q Consensus 1057 f~~y~C~~C~~~dd~k~~yHC~~CgiCRvg~~l~~~~fhC~~C~~C~~~~~-~~H~C~e~~~~~ 1119 (1241)
|++|||+||||||++|+|||||+|||||||+ +++||||++||+||++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CEEEEECEEECCCCCCCEECCCCCCCEECCC--CCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0106711004355778604278887324468--7576788918823635657674657667668
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=174.33 Aligned_cols=72 Identities=38% Similarity=0.636 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 878885535301333313788830399976530665177489899777631222046888899544422357
Q 000878 1159 CPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKND 1230 (1241)
Q Consensus 1159 CPiCrksi~~m~~~~~~lD~~i~~~~~P~ey~~~~~~i~CnDC~~~s~~~~h~l~~kC~~CgSyNT~~~~~~ 1230 (1241)
||+|+|+++||+.+|+++|++|+++|||++|+++++.|+||||++++.++|||+||||++||||||++++-.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGR 72 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCC
T ss_conf 983541699999999999999985789989959793789999998752774030256869989485766788
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=140.78 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH---HH
Q ss_conf 89960899999999999999999999998640-69-954699999999999997301371210120098866633---48
Q 000878 36 EDDDSPILIFCFFHKAVRNELDALHQLAMNFA-TG-HRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVK---NV 110 (1241)
Q Consensus 36 ~~~~~PId~l~~~H~AIRreL~~L~~la~~i~-~g-d~~dl~~L~~~l~fL~~~l~~HH~aEDevLFPaL~~R~p---~v 110 (1241)
+....+|+.|...|+.||+.+..|..++..+. .| +......+...+.+|...+..||.+||++|||+|+++.+ .+
T Consensus 12 ~~~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~ 91 (172)
T 2p0n_A 12 VTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQES 91 (172)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 71621999999999999999999999999998759983999999999999987798777407888519998638514489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999859989989999999985200599972799999999999999997999999599999502999999999999971
Q 000878 111 ARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFC 190 (1241)
Q Consensus 111 l~~le~EH~~id~lL~~L~~lL~~~~~~~~~~~~eLa~~l~~L~~~L~~HL~~EE~eVlPLa~k~lS~eEqa~L~~~~l~ 190 (1241)
++.|..||..+...++.|...+..+..+..... ....+..|...+.+|+.+||+ +||.+++.||+++|.+|+.++..
T Consensus 92 i~~l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~--~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 92 VDELLRQHIGLHDNWAAVSAEFAKLEADNAYVP--DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999999999999999999876997743--499999999999999999877-77999976999999999999997
Q ss_pred C
Q ss_conf 5
Q 000878 191 S 191 (1241)
Q Consensus 191 s 191 (1241)
-
T Consensus 169 r 169 (172)
T 2p0n_A 169 R 169 (172)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=135.78 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHH
Q ss_conf 960899999999999999999999998640699-----546999999999999973013712101200988666-33489
Q 000878 38 DDSPILIFCFFHKAVRNELDALHQLAMNFATGH-----RVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIR-VKNVA 111 (1241)
Q Consensus 38 ~~~PId~l~~~H~AIRreL~~L~~la~~i~~gd-----~~dl~~L~~~l~fL~~~l~~HH~aEDevLFPaL~~R-~p~vl 111 (1241)
.-.|++.|..+|++|++.|..|...+.++..+. ...+..+...+.+|.++-..||..||++|||+|++. .++++
T Consensus 7 ~ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~ 86 (369)
T 3cax_A 7 EGHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIA 86 (369)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99878999999999999999999999998603652113678999999999999878876312576663899984998789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999859989989999999985200599-972799999999999999997999999599999502999999999999971
Q 000878 112 RKYSLEHEGESNLFDHLFQLLNSYTQND-ESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFC 190 (1241)
Q Consensus 112 ~~le~EH~~id~lL~~L~~lL~~~~~~~-~~~~~eLa~~l~~L~~~L~~HL~~EE~eVlPLa~k~lS~eEqa~L~~~~l~ 190 (1241)
..|..||.++..++..+..+++.....+ ..+...+...+..|...+.+|+.+||+.+||++.+.||.++|..|..++-.
T Consensus 87 ~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~~e 166 (369)
T 3cax_A 87 TVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQEDE 166 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 26777769999999999999845456641568999999999999999999999998899999986899999999826762
No 5
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=111.23 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 999416999999999976746787623689--8876799999999999999873101474112242232331-1023563
Q 000878 647 AERPIDTIFKFHKAISKDLEYLDMESAKLS--DCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKE-ALHNVSH 723 (1241)
Q Consensus 647 ~~~Pid~i~~~H~A~RrdL~~L~~~~~~~~--~~d~~~~~~~~~rf~~l~~~l~~Hh~aEDeivwPaLe~r~-~l~nvs~ 723 (1241)
...||+.+..-|+.+|+.|..|...+.++. ..|......+..-|..|...++.||..|++++||+|+.+. ....+..
T Consensus 14 ~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~ 93 (172)
T 2p0n_A 14 FAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVD 93 (172)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 62199999999999999999999999999875998399999999999998779877740788851999863851448999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22201147987998799999856432005999887322222235797236558999999998789999989676675666
Q 000878 724 SYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEEL 803 (1241)
Q Consensus 724 s~~ldH~~e~~lf~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~l~~~L~~Hl~~EE~ 803 (1241)
.+..+|....+++..+...|..+..... ... + +..+ +.+...|..||+.||.
T Consensus 94 ~l~~EH~~~~~~l~~l~~~l~~~~~~~~---------------~~~-~--------~~~l----~~~~~~l~~Hi~~EE~ 145 (172)
T 2p0n_A 94 ELLRQHIGLHDNWAAVSAEFAKLEADNA---------------YVP-D--------EEAF----KRFVAGYDVHLAIEEP 145 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTT---------------CCC-C--------HHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------CCC-C--------HHHH----HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999876997---------------743-4--------9999----9999999999999877
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 410123203999999999967723779
Q 000878 804 ELWPLFGRHFSVEEQDKIVGRIIGSTG 830 (1241)
Q Consensus 804 el~PL~~~~~t~~Ew~~i~~~~~~~~~ 830 (1241)
++|.+++.+|.++|+.|+..+..+.+
T Consensus 146 -lfP~a~~~L~~~~~~~l~~~~~~rr~ 171 (172)
T 2p0n_A 146 -LFDMGNTFIPKEKLTEIGEIMAARRR 171 (172)
T ss_dssp -HHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf -77999976999999999999997728
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.12 Aligned_cols=49 Identities=20% Similarity=0.512 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCCCCCEEEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 886632322334588823872-79970136559998706999878885535
Q 000878 1118 ETNCPICCDFLFTSSETVRAL-PCGHYMHLACFQAYTCSHYTCPICSKSLG 1167 (1241)
Q Consensus 1118 ~~~CpICle~lf~s~~~~~~l-pCgH~~H~~Cl~~wl~~~~~CPiCrksi~ 1167 (1241)
+..|+||+++ +...+.++.+ +|||.||.+||.+|+..+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~-~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAE-NKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHH-TCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred HCCCCCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 5648600022-5788568994899984475999999986898988297843
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=89.23 Aligned_cols=51 Identities=33% Similarity=0.853 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6886632322334588823872799701365599987069998788855353
Q 000878 1117 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1168 (1241)
Q Consensus 1117 ~~~~CpICle~lf~s~~~~~~lpCgH~~H~~Cl~~wl~~~~~CPiCrksi~~ 1168 (1241)
.+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCCCHH-HCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99988436902-1589827962799948999999999769968380940799
No 8
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=88.85 Aligned_cols=146 Identities=19% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9416999999999976746787623689887-----6799999999999999873-101474112242232331102356
Q 000878 649 RPIDTIFKFHKAISKDLEYLDMESAKLSDCD-----ETFLRQFIGRFRLLWGLYR-AHSNAEDEIVFPALESKEALHNVS 722 (1241)
Q Consensus 649 ~Pid~i~~~H~A~RrdL~~L~~~~~~~~~~d-----~~~~~~~~~rf~~l~~~l~-~Hh~aEDeivwPaLe~r~~l~nvs 722 (1241)
-||+.+..=|++||+.|..|...+.++..+. ...+..+..-|..|.. +. .||.-|.++|||.|+.. ...+.+
T Consensus 9 hpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~-g~~~p~ 86 (369)
T 3cax_A 9 HPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERR-GLTVIA 86 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTT-TCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-CCCCCC
T ss_conf 8789999999999999999999999986036521136789999999999998-78876312576663899984-998789
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32220114798799879999985643200599988732222223579723655899999999878999998967667566
Q 000878 723 HSYTLDHKQEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEE 802 (1241)
Q Consensus 723 ~s~~ldH~~e~~lf~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~l~~~L~~Hl~~EE 802 (1241)
..|..+|.....++..+...+..... . .....+..+...+ .++...|.+|+..||
T Consensus 87 ~vM~~eHd~~r~~l~~l~~~~~~~~~--------------------~-~~~~~~~~~~~~l----~~~~~~l~~Hi~kEe 141 (369)
T 3cax_A 87 TVLWTKHDEIRAMIKQLAELLRKREE--------------------M-PWEEFVEKFKAKA----GEVAFALSDMVFREN 141 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGG--------------------S-CHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC--------------------C-CHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf 26777769999999999999845456--------------------6-4156899999999----999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHH
Q ss_conf 6410123203999999999
Q 000878 803 LELWPLFGRHFSVEEQDKI 821 (1241)
Q Consensus 803 ~el~PL~~~~~t~~Ew~~i 821 (1241)
.-|+|.+.+.||.++|.+|
T Consensus 142 ~iLfP~a~~~ls~~dw~~i 160 (369)
T 3cax_A 142 NIFYPTLKALLSEGEWKAI 160 (369)
T ss_dssp HTHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHH
T ss_conf 8899999986899999999
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=88.49 Aligned_cols=55 Identities=31% Similarity=0.588 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCC--------------CCEEECCCCCCCCHHHHHHHH-----HCCCCCCCCCCCCCCC
Q ss_conf 556886632322334588--------------823872799701365599987-----0699987888553530
Q 000878 1115 KCLETNCPICCDFLFTSS--------------ETVRALPCGHYMHLACFQAYT-----CSHYTCPICSKSLGDM 1169 (1241)
Q Consensus 1115 ~~~~~~CpICle~lf~s~--------------~~~~~lpCgH~~H~~Cl~~wl-----~~~~~CPiCrksi~~m 1169 (1241)
...+..||||+++|.... ..+..++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999684078100374443332223455752135229979960499999999703677898699999823777
No 10
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.37 Aligned_cols=53 Identities=34% Similarity=0.723 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 568866323223345888238727997013655999870699987888553530
Q 000878 1116 CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1169 (1241)
Q Consensus 1116 ~~~~~CpICle~lf~s~~~~~~lpCgH~~H~~Cl~~wl~~~~~CPiCrksi~~m 1169 (1241)
..+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCEECCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 799989388935-27998699878998757999999997499390708807888
Done!