Query 000879
Match_columns 1239
No_of_seqs 415 out of 2248
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 17:28:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000879.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_647-651//hhsearch_pdb/000879hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3al2_A DNA topoisomerase 2-bin 1.0 1 1 275.3 13.6 206 928-1139 7-229 (235)
2 3sqd_A PAX-interacting protein 1.0 1 1 238.4 12.3 196 930-1138 16-218 (219)
3 3l41_A BRCT-containing protein 1.0 1 1 234.9 3.8 198 928-1138 6-213 (220)
4 2etx_A Mediator of DNA damage 1.0 1 1 224.1 13.3 197 926-1142 8-205 (209)
5 1l0b_A BRCA1; TANDEM-BRCT, thr 1.0 1 1 223.2 18.2 202 927-1140 4-214 (229)
6 2nte_A BARD-1, BRCA1-associate 1.0 1 1 217.1 15.6 181 930-1128 2-202 (210)
7 3u3z_A Microcephalin; DNA repa 1.0 1 1 214.4 13.7 172 929-1128 10-186 (199)
8 1t15_A Breast cancer type 1 su 1.0 1 1 211.2 13.7 191 929-1130 3-201 (214)
9 1kzy_C Tumor suppressor P53-bi 1.0 1 1 176.6 10.3 178 941-1130 59-242 (259)
10 3l46_A Protein ECT2; alternati 1.0 1 1 159.3 5.6 90 17-108 17-106 (112)
No 1
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=1.00 E-value=1 Score=275.33 Aligned_cols=206 Identities=22% Similarity=0.409 Sum_probs=159.2
Q ss_pred CCCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCC
Q ss_conf 988499981575-7599999999981979971188746864599909987749999998339907231189998732988
Q 000879 928 DEPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKF 1006 (1239)
Q Consensus 928 ~~~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkf 1006 (1239)
.+.++|++||+. +++..+.++|++|||.++.+ ..|+.+||||||+.+.||+|||+|||+|+|||+++||.+|+++|+|
T Consensus 7 ~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~-~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~ 85 (235)
T 3al2_A 7 KKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEK-QCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHF 85 (235)
T ss_dssp -CCCEEEEESCCHHHHHHHHHHHHHTTCEECCS-SSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 888799982889899999999999839999546-7779997679879998889999999849967539999999974999
Q ss_pred CCCCCCCCCCCCCCC-CCC------CCCCHHHHHHHHHHHCC-----CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
Q ss_conf 788754335799895-564------56320257899898308-----999999669996489999888999998739939
Q 000879 1007 LLEEPYEWHKNGLSE-DGA------INLEAPRKWRLLRERTG-----HGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGN 1074 (1239)
Q Consensus 1007 LDEedYEL~d~~~ee-d~~------~~~~aprR~Rl~~~~~~-----~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGk 1074 (1239)
+||++|||.++...+ ... .+..+++|||.+++++. .+||+||+|+|+.. .+..+.|++||++|||+
T Consensus 86 l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~--~~~~~~l~~ii~agGg~ 163 (235)
T 3al2_A 86 VQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVD--QSREAGFKRLLQSGGAK 163 (235)
T ss_dssp CCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECC--HHHHHHHHHHHHHTTCE
T ss_pred CCHHCEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC--CCCHHHHHHHHHCCCCE
T ss_conf 9703166147401012457773566787779999999875234455677889828999569--98389999999739968
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHCCCCEEEECCEEEEEECCCC-CCCCCCCC
Q ss_conf 9426998212236787600126999-84--136789987249656541000013411487-42211134
Q 000879 1075 ILATSPPYTRFLNSGVDFAVVSPGM-PR--VDLWVQEFLKHEIPCVVADYLVEFVCKPGY-SLERHVQY 1139 (1239)
Q Consensus 1075 Vv~~~Pp~~~~l~s~~d~iIVs~~~-~~--~D~wikeLsk~GIpCvs~EyIldyVckpgc-~LerHVly 1139 (1239)
|+...||+.. ...+++++.... .. ...+++.+.+.|++|++.+||++||+.... .++..++-
T Consensus 164 vl~~~~~~~~---~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 164 VLPGHSVPLF---KEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp ECSSCCGGGG---GGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHHHHBCG
T ss_pred EECCCCCCCC---CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCHHHEECC
T ss_conf 9668898755---66834787624689642267899998769969839999999966899983305766
No 2
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=238.43 Aligned_cols=196 Identities=20% Similarity=0.323 Sum_probs=155.4
Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCCC
Q ss_conf 8499981575-759999999998197997118874686459990998774999999833990723118999873298878
Q 000879 930 PIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLL 1008 (1239)
Q Consensus 930 ~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkfLD 1008 (1239)
.++|+|||+. .++..+.++|++|||.++.+ + ..|||||++.+.||.|||+|++.|+|||+++||.+|+++++|+|
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~---~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~ 91 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEVAES---A-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFID 91 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEECSS---G-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEECC---C-CCCEEEEECCCCCCHHHHHHHHCCCCEECHHHHHHHHHCCCCCC
T ss_conf 7499990898277999999999879999689---9-99669998999998999999875998805999999998399798
Q ss_pred CCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC
Q ss_conf 87543357998955645632-02578998983089999996699964899998889999987399399426998212236
Q 000879 1009 EEPYEWHKNGLSEDGAINLE-APRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLN 1087 (1239)
Q Consensus 1009 EedYEL~d~~~eed~~~~~~-aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~~~~l~ 1087 (1239)
|++|+|.++..+...++.+. ...++| ..+||.|+.|||+ ..+.|+.+.|++||+++||+++...|++..+..
T Consensus 92 e~~y~l~d~~~e~~~~~~l~~~l~ra~------~~~LF~G~~f~it-~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~ 164 (219)
T 3sqd_A 92 EQNYILRDAEAEVLFSFSLEESLKRAH------VSPLFKAKYFYIT-PGICPSLSTMKAIVECAGGKVLSKQPSFRKLME 164 (219)
T ss_dssp SGGGBCCCHHHHHHTTCCHHHHHHHHH------HSCTTTTEEEEEC-TTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHH
T ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHC------CCCCCCCCEEEEE-CCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHH
T ss_conf 576407780034443998678764000------2555589689993-898999999999999799999777896677665
Q ss_pred ----C-CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCC
Q ss_conf ----7-87600126999841367899872496565410000134114874221113
Q 000879 1088 ----S-GVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQ 1138 (1239)
Q Consensus 1088 ----s-~~d~iIVs~~~~~~D~wikeLsk~GIpCvs~EyIldyVckpgc~LerHVl 1138 (1239)
. ..+++||++.. ...+++.+.+.|++||+.|||++.|+.....+|++.+
T Consensus 165 ~~~~~~~~~~ivis~~~--d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~~~~ 218 (219)
T 3sqd_A 165 HKQNSSLSEIILISCEN--DLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKF 218 (219)
T ss_dssp HHHCTTSCEEEEEECGG--GGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTTSBC
T ss_pred HHCCCCCCCEEEEECCC--HHHHHHHHHHCCCCEEEHHHHHHHHHHEEECCHHCCC
T ss_conf 42036789889996620--7999999997799498089999888711645111146
No 3
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=1.00 E-value=1 Score=234.94 Aligned_cols=198 Identities=17% Similarity=0.286 Sum_probs=148.7
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCC
Q ss_conf 98849998157575999999999819799711887468645999099877499999983399072311899987329887
Q 000879 928 DEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFL 1007 (1239)
Q Consensus 928 ~~~~vVllSGLseekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkfL 1007 (1239)
...++|+|||+.+.. +.++|++|||.++.+ + .+||||||+.+.||+|||+||+.|+|||+++||.+|+++++|+
T Consensus 6 ~~~~~v~fSG~~~~~--~~~~i~~lGg~v~~~---~-~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l 79 (220)
T 3l41_A 6 SKRVYITFTGYDKKP--SIDNLKKLDMSITSN---P-SKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIV 79 (220)
T ss_dssp -CCEEEEECSCSSCC--CCGGGGGGTEEECSC---T-TTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCC--CCCHHHHCCEEECCC---C-HHHHHHHHHHHHHHCCEEECCCCCCEEEEHHHHHHHHHHHHCC
T ss_conf 626999976467888--733076516010169---3-1201002156764202045477887688758988665464323
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCEEEEECCCC--CCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 88754335799895564563-202578998983089999996699964899--998889999987399399426998212
Q 000879 1008 LEEPYEWHKNGLSEDGAINL-EAPRKWRLLRERTGHGAFHGMRIIVYGDCI--APPLDTLKRVVKAGDGNILATSPPYTR 1084 (1239)
Q Consensus 1008 DEedYEL~d~~~eed~~~~~-~aprR~Rl~~~~~~~kLF~G~rv~I~~~~v--~p~~d~LkrIIeAGGGkVv~~~Pp~~~ 1084 (1239)
||++|+|.+...+...++.+ .+..|+|. +..+||.|++|||+ +.+ .|+.+.|++||+++||+|+. .|++..
T Consensus 80 ~e~~y~l~d~~~e~~~~~~l~~~~~rar~----~~~~LF~G~~f~it-~~~~~~p~~~~l~~iI~~~GG~v~~-~p~~~~ 153 (220)
T 3l41_A 80 DEEPYLLNDPEKELELGCTLESALKRARA----QGPSLLEDYVVYLT-SKTVAPENVPAVISIVKSNGGVCST-LNVYNK 153 (220)
T ss_dssp CSGGGBCCCHHHHHHHTSCHHHHHHHHHH----HCSCTTTTSEEEEE-TTSSCGGGHHHHHHHHHHTTCEEEE-ECSCCH
T ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHH----CCCHHHHHEEEEEE-CCCCCCCCCCEEEEEEECCCCEECH-HHHHHH
T ss_conf 66852158807876305528999998872----19406544257785-1333777775378999348957421-357778
Q ss_pred CC--C-CCCCCCCCCCCCCCHHHHHHHHH----HCCCCEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 23--6-78760012699984136789987----2496565410000134114874221113
Q 000879 1085 FL--N-SGVDFAVVSPGMPRVDLWVQEFL----KHEIPCVVADYLVEFVCKPGYSLERHVQ 1138 (1239)
Q Consensus 1085 ~l--~-s~~d~iIVs~~~~~~D~wikeLs----k~GIpCvs~EyIldyVckpgc~LerHVl 1138 (1239)
.. . ....+++|++. .+...|..+.. ..++.+|..|||++.|+.....++.|+.
T Consensus 154 ~~~~~~~~~~~~vis~~-~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~ 213 (220)
T 3l41_A 154 RLARHLEDGNVVLITCN-EDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIA 213 (220)
T ss_dssp HHHHHHHHCCEEEEECG-GGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBC
T ss_pred HHHHHCCCCCEEEEEEC-CCCHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHCCCCHHHH
T ss_conf 99874046978999937-8515777764140216458872220999999998727315777
No 4
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=1.00 E-value=1 Score=224.09 Aligned_cols=197 Identities=21% Similarity=0.262 Sum_probs=149.0
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCC
Q ss_conf 56988499981575759999999998197997118874686459990998774999999833990723118999873298
Q 000879 926 LKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGK 1005 (1239)
Q Consensus 926 ~~~~~~vVllSGLseekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGk 1005 (1239)
.....++|+|||+.+. ++.++|+.|||.++.+ ++ +||||||+.+.||+|||+|++.|+|||+++||.+|+++++
T Consensus 8 ~~~~~~~v~~sG~~~~--~~~~~i~~lGg~~~~~---~~-~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~ 81 (209)
T 2etx_A 8 QESTAPKVLFTGVVDA--RGERAVLALGGSLAGS---AA-EASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGF 81 (209)
T ss_dssp ----CCEEEECSSCCH--HHHHHHHHTTCEECSS---TT-TCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHCCCEEECC---CC-CCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
T ss_conf 4578728999489868--9999999879999688---88-8649998998898999999965995666999999998499
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 87887543357998955645632-02578998983089999996699964899998889999987399399426998212
Q 000879 1006 FLLEEPYEWHKNGLSEDGAINLE-APRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTR 1084 (1239)
Q Consensus 1006 fLDEedYEL~d~~~eed~~~~~~-aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~~~ 1084 (1239)
|+||++|+|.++..+....+.+. +..++| ..+||.|++|||+ +++.++.+.|.+||+++||+++...++..
T Consensus 82 ~l~e~~y~~~~~~~~~~~~~~l~~~~~~a~------~~~lF~g~~~~~~-~~~~~~~~~l~~li~~~GG~v~~~~~~~~- 153 (209)
T 2etx_A 82 FLPPDEYVVTDPEQEKNFGFSLQDALSRAR------ERRLLEGYEIYVT-PGVQPPPPQMGEIISCCGGTYLPSMPRSY- 153 (209)
T ss_dssp CCCSGGGBCCCHHHHHHTTCCHHHHHHHHH------HSCTTTTCEEEEC-TTCSSCHHHHHHHHHHTTCEECSSCCCSC-
T ss_pred CCCHHHCCCCCHHHHHHCCCCHHHHHHHHH------HCCCCCCCEEEEE-CCCCCCHHHHHHHHHHCCCEEECCCCCCC-
T ss_conf 788342245483666550998789876455------2777689389992-79889999999999978999978788877-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2367876001269998413678998724965654100001341148742211134552
Q 000879 1085 FLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTH 1142 (1239)
Q Consensus 1085 ~l~s~~d~iIVs~~~~~~D~wikeLsk~GIpCvs~EyIldyVckpgc~LerHVlyNtc 1142 (1239)
..+.+||+.. .... .++.+...+++|+..+||+++|......++.+++++.-
T Consensus 154 ----~~~~ivI~~~-~d~~-~~~~~~~~~i~vvs~eWi~~sI~~q~ld~e~y~l~~~~ 205 (209)
T 2etx_A 154 ----KPQRVVITCP-QDFP-HCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLE 205 (209)
T ss_dssp ----CTTEEEECCG-GGGG-GCHHHHHHTCCEECTHHHHHHHHHTCCCGGGGBCCTTC
T ss_pred ----CCCEEEEECC-CCHH-HHHHHHHCCCEEECHHHHHHHHHHCCCCHHHHEECCCC
T ss_conf ----8851899876-3279-99999978995986999999998466685894305777
No 5
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=1.00 E-value=1 Score=223.22 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=155.5
Q ss_pred CCCCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCC-----CCCHHHHHHHHCCCEEECHHHHHHH
Q ss_conf 6988499981575-759999999998197997118874686459990998-----7749999998339907231189998
Q 000879 927 KDEPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEI-----RRTEKFFAAAASGRWILKTDYLSAC 1000 (1239)
Q Consensus 927 ~~~~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~-----~RT~KfL~AIA~GkWIVspsWI~dS 1000 (1239)
....++|++||+. .++..|.++++++||.++. .|+..|||||+... .||+||++||+.|+|||+++||.+|
T Consensus 4 ~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~---~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~ 80 (229)
T 1l0b_A 4 AERDISMVVSGLTPKEVMIVQKFAEKYRLALTD---VITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKS 80 (229)
T ss_dssp CCCCCEEEEESCCHHHHHHHHHHHHHTTCEECS---SCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEC---CCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEECHHHHHHH
T ss_conf 778759998589989999999999980999958---76999878997378654435659999999889909669999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCC
Q ss_conf 73298878875433579989556456320257899898308999999669996489999888999998739939942699
Q 000879 1001 SQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSP 1080 (1239)
Q Consensus 1001 lkaGkfLDEedYEL~d~~~eed~~~~~~aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~P 1080 (1239)
+++++|+||++|+|.++... .....+++++|+. ..++|.|+.|||++.+..+....|.+||+++||+++...+
T Consensus 81 ~~~~~~~~e~~y~~~~~~~~---~~~~~~~~~~r~~----~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~ 153 (229)
T 1l0b_A 81 IQERKLLSVHEFEVKGDVVT---GSNHQGPRRSRES----QEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELP 153 (229)
T ss_dssp HTTTSCCCSGGGBCCEETTT---CSSSCHHHHHHHH----C--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSS
T ss_pred HHCCCCCCHHHEEECCCCCC---CCCCCCCHHHHHH----HHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCC
T ss_conf 98788278177575254145---5334650665542----4666469669997257898999999999978998968813
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCHHHHHHHH-HHCCCCEEEECCEEEEEECCCCC-CCCCCCCC
Q ss_conf 8212236787-6001269998413678998-72496565410000134114874-22111345
Q 000879 1081 PYTRFLNSGV-DFAVVSPGMPRVDLWVQEF-LKHEIPCVVADYLVEFVCKPGYS-LERHVQYN 1140 (1239)
Q Consensus 1081 p~~~~l~s~~-d~iIVs~~~~~~D~wikeL-sk~GIpCvs~EyIldyVckpgc~-LerHVlyN 1140 (1239)
..... ... .++|+.+.....+..++.+ ...+++|+..+||++++...... .+.+.+.+
T Consensus 154 ~~~~~--~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 154 LLTRD--TGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp CGGGC--CSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC-
T ss_pred CCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCEECCC
T ss_conf 46655--79853999808841002259999987599086023899988638868963647346
No 6
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=1.00 E-value=1 Score=217.09 Aligned_cols=181 Identities=24% Similarity=0.370 Sum_probs=143.0
Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCC--CCCCHHHHHHHHCCCEEECHHHHHHHHHCCCC
Q ss_conf 8499981575-75999999999819799711887468645999099--87749999998339907231189998732988
Q 000879 930 PIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE--IRRTEKFFAAAASGRWILKTDYLSACSQAGKF 1006 (1239)
Q Consensus 930 ~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k--~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkf 1006 (1239)
.++|++||+. .++..|.+++++|||.++. +|++.|||||+.. ..||+|||+|++.|+|||+++||.+|+++++|
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~---~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~ 78 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYT---EFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVC 78 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEES---SCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEC---CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHCCCC
T ss_conf 889997899989999999999983999937---77999728997189753579999998569979658999999986983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf 78875433579989556456320257899898308999999669996489999888999998739939942699821223
Q 000879 1007 LLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFL 1086 (1239)
Q Consensus 1007 LDEedYEL~d~~~eed~~~~~~aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~~~~l 1086 (1239)
+||++|+|.+ ++.++|+.+.+...+||.|+.|||++.+..++++.|++||++|||+++.+.|......
T Consensus 79 ~~e~~y~~~~------------~~~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~ 146 (210)
T 2nte_A 79 EQEEKYEIPE------------GPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDV 146 (210)
T ss_dssp CCGGGTBCTT------------HHHHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCG
T ss_pred CCHHHCCCCC------------CCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 7866645778------------8744310101036221284489996567877899999999978988983589974212
Q ss_pred CCC-----------------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEEC
Q ss_conf 678-----------------760012699984136789987249656541000013411
Q 000879 1087 NSG-----------------VDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCK 1128 (1239)
Q Consensus 1087 ~s~-----------------~d~iIVs~~~~~~D~wikeLsk~GIpCvs~EyIldyVck 1128 (1239)
... ..+++..+...... ......+++++..+|++++|..
T Consensus 147 ~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~---~~~~~~~v~~V~~~Wl~dcI~~ 202 (210)
T 2nte_A 147 TQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHP---ERVRQGKVWKAPSSWFIDCVMS 202 (210)
T ss_dssp GGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCC---SCSEETTEEEEEHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCH---HHHHCCCCCCCCHHHHHHHHHH
T ss_conf 3565514404677766664428999526642187---8885168631258899999974
No 7
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=1.00 E-value=1 Score=214.36 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=137.3
Q ss_pred CCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCC
Q ss_conf 88499981575-75999999999819799711887468645999099877499999983399072311899987329887
Q 000879 929 EPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFL 1007 (1239)
Q Consensus 929 ~~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkfL 1007 (1239)
..++|++||++ +++..|.++|++|||..+. ..++..|||||+....||+|||+|||+|+|||+++||.+|+++|+|+
T Consensus 10 ~~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~--~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l 87 (199)
T 3u3z_A 10 PTRTLVMTSMPSEKQNVVIQVVDKLKGFSIA--PDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWI 87 (199)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHHCSCEEE--SSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEE--CCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEHHHHHHHHHCCCCC
T ss_conf 8729998188999999999999983994880--67799975999899899899999987799698079999985678978
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 8875433579989556456320257899898----308999999669996489999888999998739939942699821
Q 000879 1008 LEEPYEWHKNGLSEDGAINLEAPRKWRLLRE----RTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYT 1083 (1239)
Q Consensus 1008 DEedYEL~d~~~eed~~~~~~aprR~Rl~~~----~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~~ 1083 (1239)
||++|+|.++.. ....+|+.+. ....+||.|+.|++.+++..++.+.|++||+++||+|+.....
T Consensus 88 ~e~~y~~~~~~~---------~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-- 156 (199)
T 3u3z_A 88 SEEPFELSHHFP---------AAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-- 156 (199)
T ss_dssp CSGGGBCTTTCT---------HHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG--
T ss_pred CHHHCCCCCCCC---------CCCCCHHHHHHHCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCC--
T ss_conf 754335667864---------453202341320233344010798599978998878999999999859899565787--
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEEC
Q ss_conf 223678760012699984136789987249656541000013411
Q 000879 1084 RFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCK 1128 (1239)
Q Consensus 1084 ~~l~s~~d~iIVs~~~~~~D~wikeLsk~GIpCvs~EyIldyVck 1128 (1239)
.+++ |.+... -...+++++.++||+|+|..
T Consensus 157 ------~~ii-I~~~~~--------~~~~~~~~V~p~Wi~DsI~~ 186 (199)
T 3u3z_A 157 ------ASIV-IGPYSG--------KKKATVKYLSEKWVLDSITQ 186 (199)
T ss_dssp ------CSEE-ESCCCS--------CCCTTCEEECHHHHHHHHHH
T ss_pred ------CEEE-EECCCH--------HCCCCCCEECHHHHHHHHHC
T ss_conf ------8799-967704--------41389718782089999870
No 8
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=1.00 E-value=1 Score=211.21 Aligned_cols=191 Identities=21% Similarity=0.313 Sum_probs=146.1
Q ss_pred CCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCC-----CCCHHHHHHHHCCCEEECHHHHHHHHH
Q ss_conf 88499981575-759999999998197997118874686459990998-----774999999833990723118999873
Q 000879 929 EPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEI-----RRTEKFFAAAASGRWILKTDYLSACSQ 1002 (1239)
Q Consensus 929 ~~~vVllSGLs-eekkeL~k~IkkLGG~Vv~ds~~~s~~cTHLIa~k~-----~RT~KfL~AIA~GkWIVspsWI~dSlk 1002 (1239)
..++|++||+. .++..+.++++++||.++. .|+..|||||+... .||+||++|++.|+|||+++||.+|++
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~---~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~ 79 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTN---LITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECS---SCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCEEEC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 7689997899989999999999994999927---6599973899868854322324999999866997967899999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 29887887543357998955645632025789989830899999966999648999988899999873993994269982
Q 000879 1003 AGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPY 1082 (1239)
Q Consensus 1003 aGkfLDEedYEL~d~~~eed~~~~~~aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~ 1082 (1239)
+++|+||++|+|.++... .....+++++|.. ...++|.|+.|||.+.+..++.+.|..||+++||+++...+..
T Consensus 80 ~~~~~~e~~y~~~~~~~~---~~~~~~~~~~r~~---~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~ 153 (214)
T 1t15_A 80 ERKMLNEHDFEVRGDVVN---GRNHQGPKRARES---QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSF 153 (214)
T ss_dssp TTSCCCGGGGBCCEETTT---BTTCCHHHHHHTC---TTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGC
T ss_pred CCCCCCHHHEEEECCCCC---CCCCCCHHHHHHC---CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCC
T ss_conf 799188577686022066---6465214567641---7876658978999706889899999999997799893685544
Q ss_pred CCCCCCCCC-CCCCCCCCCCHHHHHHHH-HHCCCCEEEECCEEEEEECCC
Q ss_conf 122367876-001269998413678998-724965654100001341148
Q 000879 1083 TRFLNSGVD-FAVVSPGMPRVDLWVQEF-LKHEIPCVVADYLVEFVCKPG 1130 (1239)
Q Consensus 1083 ~~~l~s~~d-~iIVs~~~~~~D~wikeL-sk~GIpCvs~EyIldyVckpg 1130 (1239)
.. ..... ++++.++........+.+ ...+++++..+||++++..-.
T Consensus 154 ~~--~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~ 201 (214)
T 1t15_A 154 TL--GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQ 201 (214)
T ss_dssp CC--STTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTS
T ss_pred CC--CCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHCC
T ss_conf 45--8897408998888663244689999963992870168997686567
No 9
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=1.00 E-value=1 Score=176.65 Aligned_cols=178 Identities=13% Similarity=0.173 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCEEEECCCCC---CCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 59999999998197997118874---686459990998774999999833990723118999873298878875433579
Q 000879 941 QRKEFQVVIRHLKGRLCRDSHQW---SYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKN 1017 (1239)
Q Consensus 941 ekkeL~k~IkkLGG~Vv~ds~~~---s~~cTHLIa~k~~RT~KfL~AIA~GkWIVspsWI~dSlkaGkfLDEedYEL~d~ 1017 (1239)
.+.+|.+.|+++||.++.+.... ...+||||++...||.|||+|+|.|.|||+++||.+|+++++++|+++|.+...
T Consensus 59 ~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g 138 (259)
T 1kzy_C 59 NKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138 (259)
T ss_dssp CHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCE
T ss_pred CHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 59999999997797995574412335677769974998775999999865998856999999987687688787407788
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCC--CC-CCCCCCC
Q ss_conf 98955645632025789989830899999966999648999988899999873993994269982122--36-7876001
Q 000879 1018 GLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRF--LN-SGVDFAV 1094 (1239)
Q Consensus 1018 ~~eed~~~~~~aprR~Rl~~~~~~~kLF~G~rv~I~~~~v~p~~d~LkrIIeAGGGkVv~~~Pp~~~~--l~-s~~d~iI 1094 (1239)
....... . ..| ....+||.|++|||++.......+.+..||+++||+++...+..... .. ...+++|
T Consensus 139 ~s~~~~~-~----~~~-----~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv 208 (259)
T 1kzy_C 139 YSLEEQR-I----LDW-----QPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVV 208 (259)
T ss_dssp EETTTTE-E----ECC-----CCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEE
T ss_pred CCCCCCH-H----HHC-----CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCEEEE
T ss_conf 5310002-3----302-----56688879808999538887889999999996698897235540123311578875999
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEECCC
Q ss_conf 269998413678998724965654100001341148
Q 000879 1095 VSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPG 1130 (1239)
Q Consensus 1095 Vs~~~~~~D~wikeLsk~GIpCvs~EyIldyVckpg 1130 (1239)
+. ..+..+ ..+.....+++++..||+++.|..-.
T Consensus 209 ~d-~~~~~~-~~~~a~~~~i~iVs~EWv~~sI~~~~ 242 (259)
T 1kzy_C 209 TD-PSCPAS-VLKCAEALQLPVVSQEWVIQCLIVGE 242 (259)
T ss_dssp EC-TTCCHH-HHHHHHHHTCCEECHHHHHHHHHHTS
T ss_pred EC-CCCHHH-HHHHHHHCCCCEECHHHHHHHHHHCC
T ss_conf 79-998599-99999844998863999999999398
No 10
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=1.00 E-value=1 Score=159.28 Aligned_cols=90 Identities=12% Similarity=0.279 Sum_probs=86.3
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHH
Q ss_conf 79989996199964898765899999999819874378635865299962487158799880699446361189999983
Q 000879 17 NGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRV 96 (1239)
Q Consensus 17 ~~ip~f~GlvIslSGf~g~eR~~I~~LI~~lGA~yt~~litk~tTHLIc~~~~geKy~~Akkwg~IpIVs~eWLedClr~ 96 (1239)
.++|+|.||+||+|||.+.+|.+|+.+|..+||+|+.. ++++||||||....+.||+.|.+|+ |+||+.+||+||++.
T Consensus 17 ~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~-l~~~cTHLV~~~~~~~K~~~A~~~~-i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 17 QGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPL-GDERCTHLVVEENIVKDLPFEPSKK-LYVVKQEWFWGSIQM 94 (112)
T ss_dssp -CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCT-TCTTCSEEEECTTTBSSCSSCCCSS-CEEEEHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEECCC-CCCCCEEEEECCCCHHHHHHHHHCC-EEEECHHHHHHHHHC
T ss_conf 47886699089984898799999999999839998766-6887359995588405677787799-008548999999986
Q ss_pred CCCCCCCCCCCC
Q ss_conf 676898655567
Q 000879 97 WELLPEVNYDKS 108 (1239)
Q Consensus 97 ~krLpE~~Y~~~ 108 (1239)
+.++||..|.+.
T Consensus 95 g~~ldE~~Y~~~ 106 (112)
T 3l46_A 95 DARAGETMYLYE 106 (112)
T ss_dssp TSCCCGGGSBCC
T ss_pred CCCCCHHHCEEC
T ss_conf 971681444220
Done!