Query 000880
Match_columns 1239
No_of_seqs 683 out of 4512
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 18:01:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000880.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_647-651//hhsearch_pdb/000880hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3net_A Histidyl-tRNA synthetas 1.0 1 1 612.8 37.6 414 781-1228 12-464 (465)
2 4g85_A Histidine-tRNA ligase, 1.0 1 1 611.4 41.6 431 779-1229 65-514 (517)
3 3lc0_A Histidyl-tRNA synthetas 1.0 1 1 605.2 38.5 405 781-1220 29-446 (456)
4 4g84_A Histidine--tRNA ligase, 1.0 1 1 599.6 40.4 430 780-1230 13-462 (464)
5 1wu7_A Histidyl-tRNA synthetas 1.0 1 1 541.7 40.8 410 781-1229 6-426 (434)
6 3od1_A ATP phosphoribosyltrans 1.0 1 1 527.0 38.4 376 779-1199 8-396 (400)
7 4e51_A Histidine--tRNA ligase; 1.0 1 1 521.3 35.1 398 780-1228 31-458 (467)
8 1htt_A Histidyl-tRNA synthetas 1.0 1 1 498.7 28.3 397 781-1228 4-422 (423)
9 1h4v_B Histidyl-tRNA synthetas 1.0 1 1 493.9 38.5 398 782-1228 4-420 (421)
10 3rac_A Histidine-tRNA ligase; 1.0 1 1 471.9 26.0 307 779-1122 21-364 (373)
No 1
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=1.00 E-value=1 Score=612.84 Aligned_cols=414 Identities=14% Similarity=0.213 Sum_probs=364.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCCCCCCCCC-EEEEECC---C----------
Q ss_conf 688886422331346677789889999999809940355520----015787433442-7898316---9----------
Q 000880 781 NRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGDCPQFKRN-TVKLLTH---G---------- 842 (1239)
Q Consensus 781 n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~~~~~~~~-~~~~~D~---~---------- 842 (1239)
-+.|+|++|++|.++..++++++.++++|++|||++|.||+| ++.++| +..++ ||+|.|+ +
T Consensus 12 ~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G-~~~ke~m~~~~d~~~~g~~~~~~~~~~ 90 (465)
T 3net_A 12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG-NQGDNIIYGLEPILPPNRQAEKDKSGD 90 (465)
T ss_dssp CSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG-CC--CBEEEEEEEC-------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCC-CCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 3699996455988999999999999999998599784665436087774158-877532399965666665432233447
Q ss_pred --CCEEEECCCCCHHHHHHHHHCC---CCCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCC--HHHHHHHHHH
Q ss_conf --9725104788688999998399---98513796337587178899997-14378699967999511--7999999999
Q 000880 843 --GDLLELSHELRLPFIRWAISNQ---KSSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALT--EAEVLKVTMD 914 (1239)
Q Consensus 843 --g~~l~LRpD~T~~iaR~v~~~~---~~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~a--DaEii~l~~~ 914 (1239)
|+.++||||+|+|+||+++++. ..|+|+||+|+|||+++|+.+|. ||+|+|+|+||.+++.+ |+|+|.++.+
T Consensus 91 ~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~ 170 (465)
T 3net_A 91 TGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE 170 (465)
T ss_dssp ---CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 79988984898839999999965635678768999635773588889976515894389977998522111999999999
Q ss_pred HHHHCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99963999832999784999999999909998899999999996258898863110009999999999619989999999
Q 000880 915 IVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRL 994 (1239)
Q Consensus 915 ~l~~Lgi~~~~~i~ig~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l 994 (1239)
+|+.||+.+ +.|+|||+++++++++.+|+++++.+.+.++++++| +.++++++..+.+ .+++++.++.+
T Consensus 171 ~l~~lgl~~-~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~---------~~~~~~~~~~l~~-~~l~~~~~~~l 239 (465)
T 3net_A 171 IFEAVNIGD-FVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLE---------KIGEAKVKLELEK-EGINPEQTQKI 239 (465)
T ss_dssp HHHHHTCSC-EEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHH---------HHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CCCHHHHHHHHHH-CCCCHHHHHHH
T ss_conf 999769974-699977899999999983998899999999987316---------3589999999976-69999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCC---CCCHHHHHHHHHH--H-HHHCCCCCC----EEECCCCCCCCCCCCEEEEEEEECC
Q ss_conf 9998872699555999985019---9995689999999--9-988068620----8982699998886434599999537
Q 000880 995 QTVGLRFCGAADQALPRLRGAL---PADKPTRKALDEL--Y-LRIWRIEKN----IYIDALMPPIESYHRNLFFQVFSVK 1064 (1239)
Q Consensus 995 ~~l~~~~~g~~~~~l~~l~~~~---~~~~~~~~~l~~L--~-l~~~~~~~~----i~~Dls~~rgl~YYTG~vFe~~~~~ 1064 (1239)
..++ .+.|+..++++.++.++ ..++.+.+++++| . +..+ +..+ +.||++++||++||||+|||+|..+
T Consensus 240 ~~l~-~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~ 317 (465)
T 3net_A 240 IDFV-KIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIG 317 (465)
T ss_dssp HHHH-TCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETT
T ss_pred HHHH-HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCCEEEEEEECC
T ss_conf 9999-73288699999999865304667678999999999999975-254557449980675578765472499999778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC-CCCCCCCCCCCCEEEEEECC
Q ss_conf 77765433454000265553111110-21000034689999960156422899986077-99868777787359999638
Q 000880 1065 EKYPATLVEGTLLAVGGRYDYLLHRM-WDREYVGYASRTNPPSGVGASLALETIIQHYP-VDFKPVRNEAGTSVLVCSRG 1142 (1239)
Q Consensus 1065 ~~~~~~~~~~~~I~~GGRYD~L~~~f-g~~~~~~~~~~~~~~pavGfaiglerl~~~l~-~~~~~~~~~~~~~vlv~~~~ 1142 (1239)
.+ .+++||+|||||+|+++| |+ ++||||||||+|||+.+|. ++..+.....+.+|+|++.+
T Consensus 318 ~~------~~~~i~~GGRYD~L~~~f~g~-----------~~pavGfaiGieRli~~L~e~g~~p~~~~~p~~V~Vi~~~ 380 (465)
T 3net_A 318 HE------ALGSICSGGRYEELVGTFIGE-----------KMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ 380 (465)
T ss_dssp CG------GGCCSSEEEEESSSSGGGTCS-----------CCCEEEEEEEHHHHHHHHHHTTSSCCCCSCSCCEEECCSC
T ss_pred CC------CCCEECCCCCHHHHHHHHCCC-----------CCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 88------654042662289986440499-----------8863566415999999999769997767899769999768
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC-EEEEEECCCCCCCCCCHHHHH
Q ss_conf 9760999999999999839918995079999899999999489969999847733577-089999567842110257899
Q 000880 1143 GGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKG-LVKVRHLDVKKEKEVQRESLV 1221 (1239)
Q Consensus 1143 ~~~~~~~a~~la~~Lr~~G~~v~~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~-~i~vk~l~~~~q~~v~~~el~ 1221 (1239)
+.....|++++++||+.|++|++++. .+++++++++|++.|+||++++|++ +++| +|+||+|.+++|..+++++++
T Consensus 381 -~~~~~~A~~la~~LR~~Gi~ve~d~~-~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~ 457 (465)
T 3net_A 381 -DELMPTYLKVSQQLRQAGLNVITNFE-KRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLA 457 (465)
T ss_dssp -GGGHHHHHHHHHHHHHTTCCEEECCS-CCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHH
T ss_pred -HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHCCCCEEEEECCH-HHCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf -78999999999999978997999708-8898999999998699999998931-32699799999999956776099999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000880 1222 RFLLDAI 1228 (1239)
Q Consensus 1222 ~~l~~~l 1228 (1239)
+.++..+
T Consensus 458 ~~l~~~l 464 (465)
T 3net_A 458 EEIKRRL 464 (465)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999860
No 2
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=611.43 Aligned_cols=431 Identities=25% Similarity=0.416 Sum_probs=368.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCCCCCCCCCEEEEECCCCCEEEECCCCCH
Q ss_conf 34688886422331346677789889999999809940355520----01578743344278983169972510478868
Q 000880 779 RLNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGDCPQFKRNTVKLLTHGGDLLELSHELRL 854 (1239)
Q Consensus 779 ~~n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~ 854 (1239)
-+=+.|+|++||+|.++..+++|++.++++|++|||++|.||+| ++.++++...++||+|.|++|+.++||||+|+
T Consensus 65 ~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~ 144 (517)
T 4g85_A 65 FVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTV 144 (517)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCH
T ss_conf 43638998776598999999999999999999879959899620718886002486753069998899998985786719
Q ss_pred HHHHHHHHCCCCCEEEEEECCEEECCCC--C-CCCCCEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8999998399985137963375871788--9-9997143786999679995-1179999999999996399983299978
Q 000880 855 PFIRWAISNQKSSFKRYEISSVYRRAIG--H-SPPNRYLQGDFDIIGGASA-LTEAEVLKVTMDIVTRFFHAESCDIHLN 930 (1239)
Q Consensus 855 ~iaR~v~~~~~~p~r~~y~g~VfR~e~~--~-~~~~ef~Q~GvEiiG~~s~-~aDaEii~l~~~~l~~Lgi~~~~~i~ig 930 (1239)
|+||++++|+..|+|+||+|+|||+|+| + ++.|||+|+|+|+||..++ .+|+|+|.++.++|+.||+.+ +.++||
T Consensus 145 ~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~-~~i~in 223 (517)
T 4g85_A 145 PFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD-FLVKVN 223 (517)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCC-EEEEEE
T ss_pred HHHHHHHHCCCCCCEEEEEECEEECCCCCCCCCCCCEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf 9999999679987406997042722686455676411334042205775421779999999999998636776-432013
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 49999999999099988999999999962588988631100099999999996199899999999998872699555999
Q 000880 931 HGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQALP 1010 (1239)
Q Consensus 931 ~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~g~~~~~l~ 1010 (1239)
|+++++++++.++++++..+.+..+++++| +.+++++..+++...++.++.++.+..+. ...|....+..
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~ld~ld---------k~~~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~ 293 (517)
T 4g85_A 224 DRRILDGMFAICGVSDSKFRTICSSVDKLD---------KVSWEEVKNEMVGEKGLAPEVADRIGDYV-QQHGGVSLVEQ 293 (517)
T ss_dssp EHHHHHHHHHHHTCCHHHHHHHHHHHHTTT---------TSCHHHHHHHHHHHTCCCHHHHHHHHHHH-HCCBSHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCCHHHHH
T ss_conf 111588999862542888988877786646---------03078889998751289989999999999-86278159999
Q ss_pred HHHC-CCCCCHHHHHHHHHH-----HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCC--CCCCCCCCCCCCCC
Q ss_conf 9850-199995689999999-----998806862089826999988864345999995377776--54334540002655
Q 000880 1011 RLRG-ALPADKPTRKALDEL-----YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYP--ATLVEGTLLAVGGR 1082 (1239)
Q Consensus 1011 ~l~~-~~~~~~~~~~~l~~L-----~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~--~~~~~~~~I~~GGR 1082 (1239)
.++. .+..+.....+++++ ++..+++..+|.||++++||++||||+|||++..+.+.. ......++||+|||
T Consensus 294 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGR 373 (517)
T 4g85_A 294 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGR 373 (517)
T ss_dssp HHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCC
T ss_conf 97444444457778779999999877775088864565334346875537728999987766434667765411147875
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 53111110210000346899999601564228999860779---986877778735999963897609999999999998
Q 000880 1083 YDYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYPV---DFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWE 1159 (1239)
Q Consensus 1083 YD~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~---~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~ 1159 (1239)
||+|++.|+. .+.++||||||+|+|||+.+|++ .........+++|+|++.+ +....+|++++.+||+
T Consensus 374 YD~Lv~~f~~--------~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~-~~~~~~a~~l~~~Lr~ 444 (517)
T 4g85_A 374 YDGLVGMFDP--------KGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQ-KKLLEERLKLVSELWD 444 (517)
T ss_dssp CHHHHHTTSS--------SCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHH
T ss_conf 0178998633--------788777612101299999999973535676446788779999389-8999999999999997
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3991899507999989999999948996999984773357708999956784211025789999999998
Q 000880 1160 ENIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAIA 1229 (1239)
Q Consensus 1160 ~G~~v~~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el~~~l~~~l~ 1229 (1239)
.|++|++++..+.++++++++|++.|++|+||+|++|+++|+|+||||.+|+|..+++++++++|++++.
T Consensus 445 ~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 445 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp TTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHHC
T ss_conf 7990999848997999999999987989999987706768989999999997589669999999999765
No 3
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=1.00 E-value=1 Score=605.24 Aligned_cols=405 Identities=16% Similarity=0.187 Sum_probs=347.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCC-CCCCCCCEEEEECCCCCEEEECCCCCHH
Q ss_conf 688886422331346677789889999999809940355520----01578-7433442789831699725104788688
Q 000880 781 NRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGD-CPQFKRNTVKLLTHGGDLLELSHELRLP 855 (1239)
Q Consensus 781 n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~-~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 855 (1239)
-+.|+|++||+|.++..++++++.++++|++|||++|.||+| ++..+ |+...++||+|.|++|+.++||||+|+|
T Consensus 29 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~ 108 (456)
T 3lc0_A 29 TEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPS 108 (456)
T ss_dssp CSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHCCCCCCCHHHCEEEEECCCCCEEECCCCCHHH
T ss_conf 66899770429859999999999999999987997988871844466311355401234699986999889618767799
Q ss_pred HHHHHHHCCC---CCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEE
Q ss_conf 9999983999---8513796337587178899997-1437869996799951179999999999996399--98329997
Q 000880 856 FIRWAISNQK---SSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFH--AESCDIHL 929 (1239)
Q Consensus 856 iaR~v~~~~~---~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi--~~~~~i~i 929 (1239)
+||+++++.. .|+|+||+|+|||+++|+.+|. ||+|+|+|+||.+++.+|+|+|.++.++|+.||+ .+ +.|+|
T Consensus 109 ~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~~-~~i~i 187 (456)
T 3lc0_A 109 LARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKD-VGIKV 187 (456)
T ss_dssp HHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTTT-EEEEE
T ss_pred HHHHHHHCCCCCCCCEEEEEECCEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEE
T ss_conf 99999856766688779998426883688888986613898799981897276699999999999983998873-69997
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 84999999999909998899999999996258898863110009999999999619989999999999887269955599
Q 000880 930 NHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQAL 1009 (1239)
Q Consensus 930 g~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~g~~~~~l 1009 (1239)
||+++++++++.+|++++....++.++++++ +.++++++..+.+ .+++++.++.+..++ .+. . +
T Consensus 188 n~~~il~~~l~~~g~~~~~~~~v~~~idkl~---------~~~~~~~~~~L~~-~~l~~~~~~~l~~~~-~~~-~----~ 251 (456)
T 3lc0_A 188 NSRKVLQTVVEQAGVTSDKFAPVCVIVDKME---------KIPREEVEAQLAV-LGLEPTVVDAITTTL-SLK-S----I 251 (456)
T ss_dssp EEHHHHHHHHHHTTCCGGGHHHHHHHHTTTT---------TSCHHHHHHHHHH-TTCCHHHHHHHHHHH-TCC-S----H
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHH-CCCCHHHHHHHHHHH-CCC-C----H
T ss_conf 5989999999984998899999999998752---------0589999999987-499999999999876-449-9----9
Q ss_pred HHHHCCCCCCHHHHHHHHHH--HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99850199995689999999--9988068620898269999888643459999953777765433454000265553111
Q 000880 1010 PRLRGALPADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDYLL 1087 (1239)
Q Consensus 1010 ~~l~~~~~~~~~~~~~l~~L--~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~GGRYD~L~ 1087 (1239)
+.+..++.......+.|.++ ++..+|+..++.||++++||+|||||+|||+|... +.+++||+|||||+|+
T Consensus 252 ~~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~-------g~~~~I~~GGRYD~Lv 324 (456)
T 3lc0_A 252 DEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDRE-------GKFRALCGGGRYDNLL 324 (456)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETT-------SCSSCSEEEEECSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECC-------CCCCEEEECCCHHHHH
T ss_conf 999998767899999999999999973998339982685677665687499999878-------9724375065688999
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11021000034689999960156422899986077998687777873599996389760999999999999839918995
Q 000880 1088 HRMWDREYVGYASRTNPPSGVGASLALETIIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFV 1167 (1239)
Q Consensus 1088 ~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~~G~~v~~~ 1167 (1239)
+.||++ .++||||||+|+|||+.+|+.....++.....+++|++.+ ++....+++++..||+.|++|+++
T Consensus 325 ~~fg~~---------~~~PavGFaig~eRl~~~l~~~~~~~~~~~~~~v~v~~~~-~~~~~~a~~la~~LR~~Gi~ve~~ 394 (456)
T 3lc0_A 325 TTYGSP---------TPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFD-ESMRPHALAVLRRLRDAGRSADII 394 (456)
T ss_dssp HHTTCS---------SCCCEEEEEEESSHHHHHHHHTTCCCCCCCCEEEEEEESS-GGGHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHCCC---------CCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 983799---------9997899985799999999865888766787768999828-799999999999999779869982
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 07999989999999948996999984773357708999956784211025789
Q 000880 1168 PVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESL 1220 (1239)
Q Consensus 1168 ~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el 1220 (1239)
+. .+++++++++|++.|++|++|+|++|+++|+|+||||.+++|..++.++.
T Consensus 395 ~~-~~slkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 395 LD-KKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp CS-CCCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred CC-CCCHHHHHHHHHHCCCCEEEEECCCHHCCCEEEEEECCCCCEEEECCCCC
T ss_conf 68-77799999999986999999988743107917999999898677444556
No 4
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=599.61 Aligned_cols=430 Identities=25% Similarity=0.423 Sum_probs=366.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCCCCCCCCCEEEEECCCCCEEEECCCCCHH
Q ss_conf 4688886422331346677789889999999809940355520----015787433442789831699725104788688
Q 000880 780 LNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGDCPQFKRNTVKLLTHGGDLLELSHELRLP 855 (1239)
Q Consensus 780 ~n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 855 (1239)
+-+.|+|++||+|.++..++++++.++++|++|||++|.||+| ++.+++....++||+|.|++|+.++||||+|+|
T Consensus 13 ~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~ 92 (464)
T 4g84_A 13 VLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVP 92 (464)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHH
T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCHH
T ss_conf 65389985766989999999999999999998799697886217088850025867530699998999989748867099
Q ss_pred HHHHHHHCCCCCEEEEEECCEEECCCCC--C-CCCCEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9999983999851379633758717889--9-997143786999679995-11799999999999963999832999784
Q 000880 856 FIRWAISNQKSSFKRYEISSVYRRAIGH--S-PPNRYLQGDFDIIGGASA-LTEAEVLKVTMDIVTRFFHAESCDIHLNH 931 (1239)
Q Consensus 856 iaR~v~~~~~~p~r~~y~g~VfR~e~~~--~-~~~ef~Q~GvEiiG~~s~-~aDaEii~l~~~~l~~Lgi~~~~~i~ig~ 931 (1239)
+||++++|+..|+|+||+|+|||+|+|+ + +.|||+|+|+|+||..++ .+|+|+|.++.++|+.+|+.+ +.++|||
T Consensus 93 ~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~-~~i~i~~ 171 (464)
T 4g84_A 93 FARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD-FLVKVND 171 (464)
T ss_dssp HHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCC-EEEEEEE
T ss_pred HHHHHHHCCCCCCEEEEEECCEECCCCCCCCCCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEECC
T ss_conf 999999669988606898450631687445676540023253316785420547999999999999837887-4121012
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999990999889999999999625889886311000999999999961998999999999988726995559999
Q 000880 932 GDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQALPR 1011 (1239)
Q Consensus 932 ~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~g~~~~~l~~ 1011 (1239)
+++++++++.++++++..+.+..+++++| +.+++++..+++...++.++.++.+..++ ...|.. ..++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~g~~-~~~~~ 240 (464)
T 4g84_A 172 RRILDGMFAICGVSDSKFRTICSSVDKLD---------KVSWEEVKNEMVGEKGLAPEVADRIGDYV-QQHGGV-SLVEQ 240 (464)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHGGGG---------TSCHHHHHHHHHHTTCCCHHHHHHHHHHH-TCEESH-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCC-HHHHH
T ss_conf 01089999861684999988888898756---------04177789999864289989999999999-862781-59999
Q ss_pred HHC--CCCCCHHHHHHHHHH-----HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCC--CCCCCCCCCCCCC
Q ss_conf 850--199995689999999-----9988068620898269999888643459999953777765--4334540002655
Q 000880 1012 LRG--ALPADKPTRKALDEL-----YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPA--TLVEGTLLAVGGR 1082 (1239)
Q Consensus 1012 l~~--~~~~~~~~~~~l~~L-----~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~--~~~~~~~I~~GGR 1082 (1239)
+.. .+..+....++++++ ++...++..++.||++++||++||||+|||++..+.+... .....++||+|||
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGR 320 (464)
T 4g84_A 241 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGR 320 (464)
T ss_dssp HTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCC
T ss_conf 97444444467778779999987767776178851666434247885758829999987766434667766420126785
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 53111110210000346899999601564228999860779---986877778735999963897609999999999998
Q 000880 1083 YDYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYPV---DFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWE 1159 (1239)
Q Consensus 1083 YD~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~---~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~ 1159 (1239)
||+|++.|+. .+.++||||||+|+|||+.++++ ...+.+...+++|+|++.+ +....+|++++++||+
T Consensus 321 YD~L~~~~~~--------~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~a~~l~~~Lr~ 391 (464)
T 4g84_A 321 YDGLVGMFDP--------KGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQ-KKLLEERLKLVSELWD 391 (464)
T ss_dssp CCSTGGGTST--------TCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHH
T ss_conf 1588998632--------788777745330399999999984534676545565317998279-8999999999999997
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 39918995079999899999999489969999847733577089999567842110257899999999983
Q 000880 1160 ENIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAIAS 1230 (1239)
Q Consensus 1160 ~G~~v~~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el~~~l~~~l~~ 1230 (1239)
.|++|++++....++++++++|++.|++|+||+|++|+++|+|+||||.+|+|..+++++++++|++++..
T Consensus 392 ~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 462 (464)
T 4g84_A 392 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462 (464)
T ss_dssp TTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHHCC
T ss_conf 79919998589979999999999879899999886066589899999999976995399999999997659
No 5
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=1.00 E-value=1 Score=541.66 Aligned_cols=410 Identities=17% Similarity=0.230 Sum_probs=347.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCC-CCCCCCCEEEEECCCCCEEEECCCCCHH
Q ss_conf 688886422331346677789889999999809940355520----01578-7433442789831699725104788688
Q 000880 781 NRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGD-CPQFKRNTVKLLTHGGDLLELSHELRLP 855 (1239)
Q Consensus 781 n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~-~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 855 (1239)
-+.++|++||+|.++..+++|++.++++|++|||++|.||+| ++... |....++||+|.|++|+.++||||+|+|
T Consensus 6 ~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~ 85 (434)
T 1wu7_A 6 IEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPS 85 (434)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCHHH
T ss_conf 48999877479899999999999999999986998833654151787510047702240599998999989868998499
Q ss_pred HHHHHHHCCC--CCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEECC
Q ss_conf 9999983999--8513796337587178899997-1437869996799951179999999999996399983-2999784
Q 000880 856 FIRWAISNQK--SSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAES-CDIHLNH 931 (1239)
Q Consensus 856 iaR~v~~~~~--~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi~~~-~~i~ig~ 931 (1239)
+||++++++. .|+|+||+|+|||+|+|+.+|. ||+|+|+|+||.+++.+|+|+|.++.++|+.||+. + +.|+|||
T Consensus 86 ~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~-~~~~i~l~~ 164 (434)
T 1wu7_A 86 TVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ-DIYEIRINS 164 (434)
T ss_dssp HHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT-TSEEEEEEE
T ss_pred HHHHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEECC
T ss_conf 9999996588888868999767566778777875516982189983898075699999999999976999-836999877
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999990999889999999999625889886311000999999999961998999999999988726995559999
Q 000880 932 GDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQALPR 1011 (1239)
Q Consensus 932 ~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~g~~~~~l~~ 1011 (1239)
++++.++++.+| ++++. .++.++++++ +..++++...+ +..++.....+.+.+|+ ...+...+ ++.
T Consensus 165 ~g~~~~~~~~~g-~~~~~-~l~~~l~~~~---------~~~~~~~~~~l-~~~~l~~~~~~~~~~~~-~~~~~~~~-l~~ 230 (434)
T 1wu7_A 165 RKIMEEIIGGMT-SSDPF-SVFSIIDRYH---------KISREEFVDQL-RSAGIGEDGVSMIADLC-SGTRGIDE-MAR 230 (434)
T ss_dssp HHHHHHHHHTTC-SSCHH-HHHHHHHTTT---------TSCHHHHHHHH-HHTTCCHHHHHHHHHHH-HSCBCHHH-HHH
T ss_pred HHHHHHHHHHHC-CHHHH-HHHHHHHHHH---------CCCHHHHHHHH-HHCCCCHHHHHHHHHHH-HHCCCHHH-HHH
T ss_conf 612999998728-37689-9999998775---------34669999999-86799989999999999-81998889-998
Q ss_pred HHCCCCCCHHHHHHHHHH--HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 850199995689999999--998806862089826999988864345999995377776543345400026555311111
Q 000880 1012 LRGALPADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDYLLHR 1089 (1239)
Q Consensus 1012 l~~~~~~~~~~~~~l~~L--~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~GGRYD~L~~~ 1089 (1239)
++ .........+.++ ++..+|+. ++.+|++++||++||||++|++|... +..++||+|||||+|++.
T Consensus 231 ~~---~~~~~~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~-------g~~~~v~~GGRYD~li~~ 299 (434)
T 1wu7_A 231 IT---GKSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRS-------GQFRAILGGGRYDNLASL 299 (434)
T ss_dssp HT---TCCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETT-------SSCSCSSEEEECTTHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCEEEEEEECC-------CCCCEEEECCCHHHHHHH
T ss_conf 77---54799999999999999976998-79988876668642278699999778-------986736425568899998
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 02100003468999996015642289998607799868777787359999638976099999999999983991899507
Q 000880 1090 MWDREYVGYASRTNPPSGVGASLALETIIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPV 1169 (1239)
Q Consensus 1090 fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~~G~~v~~~~~ 1169 (1239)
||++ +.||+|||||+|||+.++.....+. ...+.+|+|++.+ ++....|.+++++||+.|++|++++.
T Consensus 300 fgg~----------~~pa~Gf~igveRl~~~l~e~~~~~-p~~p~~v~v~~~~-~~~~~~a~~l~~~Lr~~Gi~v~~d~~ 367 (434)
T 1wu7_A 300 MSGE----------SVPAVGFGMGDAVISLLLKRENVQI-PREKKSVYICRVG-KINSSIMNEYSRKLRERGMNVTVEIM 367 (434)
T ss_dssp HHSC----------CCCEEEEEEEHHHHHHHHHHTTCCC-CCSSCEEEEEEES-SCCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred HCCC----------CCCEEEEEECHHHHHHHHHHCCCCC-CCCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 3899----------9984888876999999999638766-7778708999838-07899999999999987996999668
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999989999999948996999984773357708999956784211025789999999998
Q 000880 1170 PDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAIA 1229 (1239)
Q Consensus 1170 ~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el~~~l~~~l~ 1229 (1239)
++++++++++|++.|+|+++++|++|+++|+|+||++.++++..++++++++.+++.++
T Consensus 368 -~~~~~~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 368 -ERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp -CCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred -CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHHH
T ss_conf -99999999999877989999988546526808999878897278769999999999862
No 6
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=1.00 E-value=1 Score=527.05 Aligned_cols=376 Identities=16% Similarity=0.186 Sum_probs=318.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCCCCCCCCCEEEEECCCCCEEEECCCCCH
Q ss_conf 34688886422331346677789889999999809940355520----01578743344278983169972510478868
Q 000880 779 RLNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGDCPQFKRNTVKLLTHGGDLLELSHELRL 854 (1239)
Q Consensus 779 ~~n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~ 854 (1239)
.+-+.|+|++||+|.++..++++++.++++|++|||++|.||+| ++...++...++||+|.|++|+.++||||+|+
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~ 87 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTA 87 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHH
T ss_pred HCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCHH
T ss_conf 04448996410298899999999999999999869979767753627777542774320258998799998998987879
Q ss_pred HHHHHHHHC---CCCCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 899999839---998513796337587178899997-1437869996799951179999999999996399983299978
Q 000880 855 PFIRWAISN---QKSSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHLN 930 (1239)
Q Consensus 855 ~iaR~v~~~---~~~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi~~~~~i~ig 930 (1239)
|+||+++++ ...|+|+||+|+|||+++|+.+|. ||+|+|+|+||.+++.+|+|+|.++.++|+.+|+.+ +.|+||
T Consensus 88 ~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~-~~i~l~ 166 (400)
T 3od1_A 88 PIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSE-FKVAIG 166 (400)
T ss_dssp HHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEC
T ss_conf 9999999605357898599998588957888789877107957889779980768999999999999779971-299964
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 49999999999099988999999999962588988631100099999999996199899999999998872699555999
Q 000880 931 HGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQALP 1010 (1239)
Q Consensus 931 ~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~g~~~~~l~ 1010 (1239)
|+++++++++.++++++.++.+..+++++| +.++ +++++..+++++.++.+..++ .+.|.. ++++
T Consensus 167 ~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~---------~~~~----~~~l~~~~l~~~~~~~l~~l~-~~~g~~-~~l~ 231 (400)
T 3od1_A 167 HVGYVNALLMDVVGNEQRADRLRRFLYEKN---------YVGY----REHVKSLNLSTIDKSRLMNLL-SLRGGR-AAIE 231 (400)
T ss_dssp EHHHHHHHHHHHHCCHHHHHHHHHHHHTTC---------HHHH----HHHHHHSSSCHHHHHHHHHGG-GCEESH-HHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------HHHH----HHHHHHCCCCHHHHHHHHHHH-HCCCCH-HHHH
T ss_conf 889999999873999999999999998508---------4679----998876399999999999877-542999-9999
Q ss_pred HHHCCCCCCHHHHHHHHHH-----HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9850199995689999999-----99880686208982699998886434599999537777654334540002655531
Q 000880 1011 RLRGALPADKPTRKALDEL-----YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDY 1085 (1239)
Q Consensus 1011 ~l~~~~~~~~~~~~~l~~L-----~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~GGRYD~ 1085 (1239)
.+..+ ..++...+++++| ++..+|+..++.||++++||++||||+|||+|..+.+. +||+|||||+
T Consensus 232 ~~~~l-~~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~--------~i~~GGRYD~ 302 (400)
T 3od1_A 232 EARGL-IQTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGV--------PLCSGGRYDE 302 (400)
T ss_dssp HHHTT-CCSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSS--------EEEEEEECTT
T ss_pred HHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCC--------EEECCCCCCH
T ss_conf 99866-42814699999999999999973998429994774578766588699999889997--------1623535516
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 11110210000346899999601564228999860779986877778735999963897609999999999998399189
Q 000880 1086 LLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQ 1165 (1239)
Q Consensus 1086 L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~~G~~v~ 1165 (1239)
|++.||++ +||||||+|+|||+.+++...... ...+++|+ .+ +.....+++++++||+.|++|+
T Consensus 303 L~~~fG~~-----------~pavGfaiglerL~~~l~~~~~~~---~~~~v~v~-~~-~~~~~~a~~~a~~LR~~G~~v~ 366 (400)
T 3od1_A 303 LLSKFHRP-----------AQATGFGVRIDLLVEALNGEIISN---GHEQTCIL-FS-NERRFEAIELARKKRANGEAVV 366 (400)
T ss_dssp HHHHTTCC-----------CCEEEEEEEHHHHHHHHCC---------CCCEEEE-EC-GGGHHHHHHHHHHHHTTTCCEE
T ss_pred HHHCCCCC-----------CCEEEEEEEHHHHHHHHHHCCCCC---CCCEEEEE-EC-CHHHHHHHHHHHHHHHCCCEEE
T ss_conf 56511898-----------888999954999999997448888---89819999-89-2779999999999997899799
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9507999989999999948996999984773357
Q 000880 1166 FVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQK 1199 (1239)
Q Consensus 1166 ~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~ 1199 (1239)
+...+.. +.. ||..+|+..++++.+++-..
T Consensus 367 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ 396 (400)
T 3od1_A 367 LQDLAGV--TDV--DAMSSNYQDVIYCIGTAGRG 396 (400)
T ss_dssp EEEGGGC--SCH--HHHHTTSSEEEEECSCC---
T ss_pred EEECCCH--HHH--HHHHCCCCEEEEEECCCCCC
T ss_conf 9956773--589--99986998799993478877
No 7
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=521.33 Aligned_cols=398 Identities=17% Similarity=0.207 Sum_probs=311.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCC-CC---CCCCCEEEEECCC-CCEEEECC
Q ss_conf 4688886422331346677789889999999809940355520----01578-74---3344278983169-97251047
Q 000880 780 LNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGD-CP---QFKRNTVKLLTHG-GDLLELSH 850 (1239)
Q Consensus 780 ~n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~-~~---~~~~~~~~~~D~~-g~~l~LRp 850 (1239)
.-+.++|++||+|.++.+++++++.++++|++|||++|.||+| ++... |+ ...++||+|.|++ |+.++|||
T Consensus 31 ~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRP 110 (467)
T 4e51_A 31 KLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRP 110 (467)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECS
T ss_pred CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEECC
T ss_conf 77799975546889999999999999999998699899888605377763226875332452249985599997788575
Q ss_pred CCCHHHHHHHHHCC---CCCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 88688999998399---98513796337587178899997-143786999679995117999999999999639998329
Q 000880 851 ELRLPFIRWAISNQ---KSSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCD 926 (1239)
Q Consensus 851 D~T~~iaR~v~~~~---~~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi~~~~~ 926 (1239)
|+|+|+||+++++. ..|+|+||+|+|||+|+|+.+|. ||+|+|+|+||.+++.+|+|+|.++.++|+.||+.+ +.
T Consensus 111 d~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~-~~ 189 (467)
T 4e51_A 111 ENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG-IK 189 (467)
T ss_dssp CSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCC-EE
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EE
T ss_conf 60999999999706456788799998458736898778767428997999808986899999999999999769996-69
Q ss_pred EEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHC
Q ss_conf 997849999999999099988999999999962588988631100099999999996199899999999----9988726
Q 000880 927 IHLNHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQ----TVGLRFC 1002 (1239)
Q Consensus 927 i~ig~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~----~l~~~~~ 1002 (1239)
|+|||+++.... +..++.+..++.... ..++++..+.+. .++....
T Consensus 190 i~in~~g~~~~~-------~~~~~~l~~~l~~~~-----------------------~~l~~~~~~~l~~~~l~~ld~k~ 239 (467)
T 4e51_A 190 LEINSLGLAEER-------AAHRVELIKYLEQHA-----------------------DKLDDDAQRRLYTNPLRVLDTKN 239 (467)
T ss_dssp EEEEECCCHHHH-------HHHHHHHHHHHHTTG-----------------------GGCCHHHHHHHTTCTHHHHTCCC
T ss_pred EEEECCCCHHHH-------HHHHHHHHHHHHHHH-----------------------HCCCHHHHHHHHHCHHHHHHCCC
T ss_conf 997289855556-------999999999999987-----------------------52699999998746587752234
Q ss_pred CCHHHHHHHHHCCCC-CCHHHHHHHHHH--HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 995559999850199-995689999999--99880686208982699998886434599999537777654334540002
Q 000880 1003 GAADQALPRLRGALP-ADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAV 1079 (1239)
Q Consensus 1003 g~~~~~l~~l~~~~~-~~~~~~~~l~~L--~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~ 1079 (1239)
....+++..+..+.. ......+.++.| ++..+|+. +.+|++++||++||||+||++|..+.+. .++||+
T Consensus 240 ~~~~~~l~~a~~l~~~l~~~~~~~l~~l~~~L~~~gi~--~~~d~~lvRgl~YYtg~vFe~~~~~~g~------~~tI~~ 311 (467)
T 4e51_A 240 PALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANNVP--FTINPRLVRGLDYYNLTVFEWVTDKLGA------QGTVAA 311 (467)
T ss_dssp GGGHHHHHTSCCGGGGCCHHHHHHHHHHHHHHHHTTCC--EEECTTCCCSCTTCCSEEEEEEECC----------CEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEECCCCCCCCCCCCCEEEEEEECCCCC------CCEECC
T ss_conf 65999985248888765399999999999999985984--9986764467655578699999788897------126528
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 65553111110210000346899999601564228999860779986877778735999963897609999999999998
Q 000880 1080 GGRYDYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWE 1159 (1239)
Q Consensus 1080 GGRYD~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~ 1159 (1239)
|||||+|++.||++ +.||||||+|+|||+.+|.....++ ...+.+++|++.+ +.....|++++++||+
T Consensus 312 GGRYD~Lv~~~g~~----------~~PavGfa~gleRl~~~l~~~~~~~-~~~p~~V~Vip~~-~~~~~~A~~ia~~LR~ 379 (467)
T 4e51_A 312 GGRYDPLIEQLGGK----------PTAACGWAMGIERILELLKEEHLVP-EQEGVDVYVVHQG-DAAREQAFIVAERLRD 379 (467)
T ss_dssp EEECTHHHHHTTSS----------CCCEEEEEEEHHHHHHHHHHTTCCC-CCCCCSEEEEECS-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCC----------CCCCEEEHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECC-HHHHHHHHHHHHHHHH
T ss_conf 87588999986899----------9992442188999999998548765-6788729999808-4899999999999998
Q ss_pred CCCEEEEEECC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCC-C------CCCCCCHHHHHHHHHHHH
Q ss_conf 39918995079---999899999999489969999847733577089999567-8------421102578999999999
Q 000880 1160 ENIKAQFVPVP---DPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDV-K------KEKEVQRESLVRFLLDAI 1228 (1239)
Q Consensus 1160 ~G~~v~~~~~~---~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~-~------~q~~v~~~el~~~l~~~l 1228 (1239)
.|++|+++... .+++++++++|++.|++|++++|++|+++++|+||+|.+ + +|..+++++++++++..+
T Consensus 380 ~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 380 TGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp TTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 6985999755443447999999999985999999988615327948999887778877765414774999999999972
No 8
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=1.00 E-value=1 Score=498.73 Aligned_cols=397 Identities=16% Similarity=0.201 Sum_probs=301.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECC---CC-CCCCCCCEEEEECCCCCEEEECCCC
Q ss_conf 688886422331346677789889999999809940355520----015---78-7433442789831699725104788
Q 000880 781 NRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLL---GD-CPQFKRNTVKLLTHGGDLLELSHEL 852 (1239)
Q Consensus 781 n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~---~~-~~~~~~~~~~~~D~~g~~l~LRpD~ 852 (1239)
-+.++|++||+|.++..+++|++.++++|++|||++|.||+| ++. +. ++...++||+|.|++|+.++||||+
T Consensus 4 ~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~ 83 (423)
T 1htt_A 4 IQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEG 83 (423)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCCHHHHHHHEEEEECCCCCEEEECCCC
T ss_conf 77999741359778999999999999999985998821564477999743058703332322589986999889767876
Q ss_pred CHHHHHHHHHCC---CCCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 688999998399---98513796337587178899997-1437869996799951179999999999996399-983299
Q 000880 853 RLPFIRWAISNQ---KSSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFH-AESCDI 927 (1239)
Q Consensus 853 T~~iaR~v~~~~---~~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi-~~~~~i 927 (1239)
|+|+||+++++. ..|+|+||+|+|||+|+|+.+|. ||+|+|+|+||.+++.+|+|+|.++.++|+.||+ .+ +.|
T Consensus 84 t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~-~~i 162 (423)
T 1htt_A 84 TAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH-VTL 162 (423)
T ss_dssp HHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGGG-CEE
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-CEE
T ss_conf 3999999996265467885899975776578987886551688348998899824449999999999997799988-589
Q ss_pred EECCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9784999999999909998899999999996-25889886311000999999999961998--99999999998872699
Q 000880 928 HLNHGDLLEAIWSWAGIKAEHREKVAELLAM-MGSLRPQSSEWKSKWVVIRRQLLQELNLA--EAVVNRLQTVGLRFCGA 1004 (1239)
Q Consensus 928 ~ig~~~i~~~l~~~lgl~~~~~~~l~~~l~~-~d~~~~~~~~~k~~~~~~~~~l~~~~~l~--~~~~~~l~~l~~~~~g~ 1004 (1239)
+|||++....... . ++.+..++.. .+.+. +.....+.. ..+. ......+.++
T Consensus 163 ~i~~~g~~~~~~~---~----~~~l~~~l~~~~~~~~----------~~~~~~l~~-~~l~~l~~~~~~~~~~------- 217 (423)
T 1htt_A 163 ELNSIGSLEARAN---Y----RDALVAFLEQHKEKLD----------EDCKRRMYT-NPLRVLDSKNPEVQAL------- 217 (423)
T ss_dssp EEEECCCHHHHHH---C---------------------------------------------------------------
T ss_pred EECCCCCHHHHHH---H----HHHHHHHHHHHHHCCC----------HHHHHHHHH-CHHHHHHCCCHHHHHH-------
T ss_conf 9768787556799---9----9999999999874069----------999999874-5467663145889999-------
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHH--HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 5559999850199-995689999999--9988068620898269999888643459999953777765433454000265
Q 000880 1005 ADQALPRLRGALP-ADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGG 1081 (1239)
Q Consensus 1005 ~~~~l~~l~~~~~-~~~~~~~~l~~L--~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~GG 1081 (1239)
+.....+.. ........++++ ++...|+ .+.+|++++||++||||++|+++..+.+ ..++||+||
T Consensus 218 ----l~~~~~l~~~l~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g------~~~~v~~GG 285 (423)
T 1htt_A 218 ----LNDAPALGDYLDEESREHFAGLCKLLESAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLG------SQGTVCAGG 285 (423)
T ss_dssp --------------CCHHHHHHHHHHHHHHHTTTC--CCEECTTCCCSSTTCCSEEEEEECC----------CCEEEEEE
T ss_pred ----HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCCCCCCHHHHCCCEEEEEECCCC------CCCCCCCCC
T ss_conf ----8436687866447999999999998997297--3998665354257770856899967788------868718886
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 55311111021000034689999960156422899986077-99868777787359999638976099999999999983
Q 000880 1082 RYDYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYP-VDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEE 1160 (1239)
Q Consensus 1082 RYD~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~-~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~~ 1160 (1239)
|||+|++.||++ +.||+|||||++||+.++. ++..+++ ..|.+++|++.+ +.....|.+++++||+.
T Consensus 286 RYD~l~~~fgg~----------~~pavGf~igveRl~~~l~e~~~~~~~-~~p~~v~i~~~~-~~~~~~a~~l~~~Lr~~ 353 (423)
T 1htt_A 286 RYDGLVEQLGGR----------ATPAVGFAMGLERLVLLVQAVNPEFKA-DPVVDIYLVASG-ADTQSAAMALAERLRDE 353 (423)
T ss_dssp ECTTHHHHTTSC----------CCCEEEEEEEHHHHHHHHHHHSTTCCC-CCSCSEEEEECS-TTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCC----------CCCEEEEEECHHHHHHHHHHCCCCCCC-CCCCCEEEEECC-HHHHHHHHHHHHHHHCC
T ss_conf 478999981899----------887687870498999999864767787-888718999828-78999999999999717
Q ss_pred --CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --99189950799998999999994899699998477335770899995678421102578999999999
Q 000880 1161 --NIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAI 1228 (1239)
Q Consensus 1161 --G~~v~~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el~~~l~~~l 1228 (1239)
|++|++++. ++++++++++|++.|+|+++++|++|+++|+|+||++.+++|..++++++++.+++.+
T Consensus 354 ~~Gi~v~~d~~-~~~~~~~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 354 LPGVKLMTNHG-GGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp STTCCEEECCS-CCCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCCEEECHHHHHHHHHHHH
T ss_conf 89957999479-9999999999987699999998841664690899978999745775999999999860
No 9
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=1.00 E-value=1 Score=493.91 Aligned_cols=398 Identities=15% Similarity=0.186 Sum_probs=302.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCC-C---CCCCCCEEEEECCCCCEEEECCCCC
Q ss_conf 88886422331346677789889999999809940355520----01578-7---4334427898316997251047886
Q 000880 782 RDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGD-C---PQFKRNTVKLLTHGGDLLELSHELR 853 (1239)
Q Consensus 782 ~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~-~---~~~~~~~~~~~D~~g~~l~LRpD~T 853 (1239)
+.++|++||+|.++..+++|++.++++|++|||++|.||+| ++... | +...++||+|.|++|+.++||||+|
T Consensus 4 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 83 (421)
T 1h4v_B 4 RAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGT 83 (421)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCH
T ss_conf 89998877697789999999999999999859988124530518886322697421010103899879999884177646
Q ss_pred HHHHHHHHHCC----CCCEEEEEECCEEECCCCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 88999998399----98513796337587178899997-14378699967999511799999999999963999832999
Q 000880 854 LPFIRWAISNQ----KSSFKRYEISSVYRRAIGHSPPN-RYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIH 928 (1239)
Q Consensus 854 ~~iaR~v~~~~----~~p~r~~y~g~VfR~e~~~~~~~-ef~Q~GvEiiG~~s~~aDaEii~l~~~~l~~Lgi~~~~~i~ 928 (1239)
+|+||+++++. ..|+|+||+|+|||+|+|+.+|. ||+|+|+|+||.+++.+|+|++.++.++|+.+|+.+ +.|+
T Consensus 84 ~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~-~~i~ 162 (421)
T 1h4v_B 84 AAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRR-LKVK 162 (421)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCCCCCEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEE
T ss_conf 999999996164246898079996475358888778755178802799779981642999999999999759994-5999
Q ss_pred ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCH
Q ss_conf 7849999999999099988999999999962-5889886311000999999999961998--999999999988726995
Q 000880 929 LNHGDLLEAIWSWAGIKAEHREKVAELLAMM-GSLRPQSSEWKSKWVVIRRQLLQELNLA--EAVVNRLQTVGLRFCGAA 1005 (1239)
Q Consensus 929 ig~~~i~~~l~~~lgl~~~~~~~l~~~l~~~-d~~~~~~~~~k~~~~~~~~~l~~~~~l~--~~~~~~l~~l~~~~~g~~ 1005 (1239)
|||++...... ..++.+..++... +.+. . .....+.. .++. ......+.+++..+.+
T Consensus 163 i~~~g~~~~~~-------~~~~~l~~~l~~~~~~l~------~----~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~-- 222 (421)
T 1h4v_B 163 LSSVGDPEDRA-------RYNAYLREVLSPHREALS------E----DSKERLEE-NPMRILDSKSERDQALLKELGV-- 222 (421)
T ss_pred ECCCCCHHHHH-------HHHHHHHHHHHHHHHHCC------H----HHHHHHHH-CCHHHHHCCCHHHHHHHHHCCH--
T ss_conf 86778666689-------899999999999986239------9----99999874-5628663354789999875270--
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 559999850199995689999999--998806862089826999988864345999995377776543345400026555
Q 000880 1006 DQALPRLRGALPADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRY 1083 (1239)
Q Consensus 1006 ~~~l~~l~~~~~~~~~~~~~l~~L--~l~~~~~~~~i~~Dls~~rgl~YYTG~vFe~~~~~~~~~~~~~~~~~I~~GGRY 1083 (1239)
....+. + .....+.++++ ++...|+ .+.+|++++||++||||++|++|..+.+. .++||+||||
T Consensus 223 ~~l~~~----l--~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~------~~~v~~GGRY 288 (421)
T 1h4v_B 223 RPMLDF----L--GEEARAHLKEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEEIGA------QSALGGGGRY 288 (421)
T ss_pred HHHHHH----H--HHHHHHHHHHHHHHHHHCCC--EEEEECCCCCCHHHHCCEEEEEEECCCCC------CCCCCCCCCH
T ss_conf 888987----6--28999999999998997297--19992655464245528677999667887------5765547767
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 311111021000034689999960156422899986077-9986877778735999963897609999999999998399
Q 000880 1084 DYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYP-VDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENI 1162 (1239)
Q Consensus 1084 D~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~-~~~~~~~~~~~~~vlv~~~~~~~~~~~a~~la~~Lr~~G~ 1162 (1239)
|+|++.||++ ..||+|||||++||+.++. ++..+++ ..+.+++|++.+ ++....|.+++++||+. +
T Consensus 289 d~l~~~fgg~----------~~pa~Gf~igieRl~~~l~e~~~~~~~-~~p~~v~i~~~~-~~~~~~a~~l~~~Lr~~-i 355 (421)
T 1h4v_B 289 DGLSELLGGP----------RVPGVGFAFGVERVALALEAEGFGLPE-EKGPDLYLIPLT-EEAVAEAFYLAEALRPR-L 355 (421)
T ss_pred HHHHHHHCCC----------CCCEEEEEECHHHHHHHHHHCCCCCCC-CCCCEEEEEECC-HHHHHHHHHHHHHHHHC-C
T ss_conf 8999980899----------887477763599999999854767777-899729999878-47999999999998752-7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 189950799998999999994899699998477335770899995678421102578999999999
Q 000880 1163 KAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAI 1228 (1239)
Q Consensus 1163 ~v~~~~~~~~~l~k~l~~A~~~g~~~~viig~~e~~~~~i~vk~l~~~~q~~v~~~el~~~l~~~l 1228 (1239)
+|++++. ++++++++++|++.|+|+++++|++|+++++|+||++.++++..++++++++.++..+
T Consensus 356 ~v~~d~~-~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 356 RAEYALA-PRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EEEEECC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCCCCEEECHHHHHHHHHHHH
T ss_conf 7998468-9999999999986799999998834764693899978999854787999999999860
No 10
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=1.00 E-value=1 Score=471.85 Aligned_cols=307 Identities=19% Similarity=0.182 Sum_probs=262.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE----ECCCCCCCCC-CCEEEEECCCCCEEEECCCCC
Q ss_conf 34688886422331346677789889999999809940355520----0157874334-427898316997251047886
Q 000880 779 RLNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHLEIEPM----YLLGDCPQFK-RNTVKLLTHGGDLLELSHELR 853 (1239)
Q Consensus 779 ~~n~~~~G~~D~lp~e~~~~~~I~~~l~~~f~~~Gy~~I~tP~l----~~~~~~~~~~-~~~~~~~D~~g~~l~LRpD~T 853 (1239)
.+-+.|+|++||+|.++..++++++.++++|++|||++|.||+| ++...++... ++||+|.|++|+.++||||+|
T Consensus 21 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T 100 (373)
T 3rac_A 21 GFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMT 100 (373)
T ss_dssp CCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHHCCCCCCHHCEEEEECCCCCEEEECCCCH
T ss_conf 25779997504198899999999999999999869969988754107777534876633402898879999898787688
Q ss_pred HHHHHHHHHC---CCCCEEEEEECCEEECCCC------CCCCC-CEEEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8899999839---9985137963375871788------99997-1437869996799-9511799999999999963999
Q 000880 854 LPFIRWAISN---QKSSFKRYEISSVYRRAIG------HSPPN-RYLQGDFDIIGGA-SALTEAEVLKVTMDIVTRFFHA 922 (1239)
Q Consensus 854 ~~iaR~v~~~---~~~p~r~~y~g~VfR~e~~------~~~~~-ef~Q~GvEiiG~~-s~~aDaEii~l~~~~l~~Lgi~ 922 (1239)
+|+||+++++ ...|+|+||+|+|||++++ +.+|. ||+|+|+|+||.+ ++.+|+|+|.++.++|+.+|+.
T Consensus 101 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 101 PSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998516357797699997446736787543334577641368842688789988788999999999999976998
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 83299978499999999990999889999999999625889886311000999999999961998999999999988726
Q 000880 923 ESCDIHLNHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFC 1002 (1239)
Q Consensus 923 ~~~~i~ig~~~i~~~l~~~lgl~~~~~~~l~~~l~~~d~~~~~~~~~k~~~~~~~~~l~~~~~l~~~~~~~l~~l~~~~~ 1002 (1239)
+ +.|+|||+++++++++.+|+++++++.++.+++++| +.++.++..++ +++.++.+..++ .+.
T Consensus 181 ~-~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~---------~~~~~~~~~~l------~~~~~~~l~~l~-~l~ 243 (373)
T 3rac_A 181 H-HRIVVSHARLVPRLLDALGISASLSRAFLACLTSGN---------YVQFRELWQLH------AAKDVDLLANLL-TWS 243 (373)
T ss_dssp S-CEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTC---------HHHHHHHHHHH------CSCCSCHHHHHH-HBC
T ss_pred C-EEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------HHHHHHHHHHC------CHHHHHHHHHHH-HHH
T ss_conf 2-299964879999999984999999999999998427---------25499999965------999999999899-874
Q ss_pred C-----------CHHHHHHHHHCCCCCCHHH----HHHHHHH-----HHHHCCC-CCCEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 9-----------9555999985019999568----9999999-----9988068-6208982699998886434599999
Q 000880 1003 G-----------AADQALPRLRGALPADKPT----RKALDEL-----YLRIWRI-EKNIYIDALMPPIESYHRNLFFQVF 1061 (1239)
Q Consensus 1003 g-----------~~~~~l~~l~~~~~~~~~~----~~~l~~L-----~l~~~~~-~~~i~~Dls~~rgl~YYTG~vFe~~ 1061 (1239)
| ...++++.+..+.. ++.. .+++++| ++..+|+ ..++.||++++||++||||+|||+|
T Consensus 244 g~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~ 322 (373)
T 3rac_A 244 PAERDAAKRSREASDRELEALLRDAV-DPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMF 322 (373)
T ss_dssp CCSSCTTSBCHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEE
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 88653222345443999999986411-74210238999999999999999759987619994885678776588699999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC
Q ss_conf 5377776543345400026555311111021000034689999960156422899986077
Q 000880 1062 SVKEKYPATLVEGTLLAVGGRYDYLLHRMWDREYVGYASRTNPPSGVGASLALETIIQHYP 1122 (1239)
Q Consensus 1062 ~~~~~~~~~~~~~~~I~~GGRYD~L~~~fg~~~~~~~~~~~~~~pavGfaiglerl~~~l~ 1122 (1239)
..+.+. +||+|||||+|++.||. ++||||||+|+|||+.+|+
T Consensus 323 ~~~~g~--------~i~~GGRYD~L~~~fG~-----------~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 323 APGVGA--------PIAQGGRYDELLAQFGA-----------GAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp CTTCSS--------CSEEEEECTTTTGGGTC-----------CCCCEEEEEEHHHHHHHHH
T ss_pred ECCCCC--------EEEECCCCCHHHHHHCC-----------CCCEEEEEEEHHHHHHHHH
T ss_conf 889998--------57525663077885299-----------9875999977999999998
Done!