Query 000881
Match_columns 1239
No_of_seqs 461 out of 1468
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 15:55:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000881.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_652-656//hhsearch_pdb/000881hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 363.3 7.4 138 975-1117 4-142 (143)
2 2k2d_A Ring finger and CHY zin 1.0 1 1 185.6 1.1 72 1157-1228 1-72 (79)
3 2p0n_A Hypothetical protein NM 1.0 1 1 116.6 16.1 144 291-442 15-167 (172)
4 2p0n_A Hypothetical protein NM 1.0 1 1 114.4 15.2 149 41-194 15-168 (172)
5 3cax_A Uncharacterized protein 1.0 1 1 113.7 16.2 149 291-443 8-166 (369)
6 3cax_A Uncharacterized protein 1.0 1 1 99.9 16.1 149 643-820 8-162 (369)
7 1v87_A Deltex protein 2; ring- 1.0 1 1 91.0 4.5 55 1113-1167 22-95 (114)
8 2l0b_A E3 ubiquitin-protein li 1.0 1 1 90.3 3.3 53 1113-1166 37-89 (91)
9 1x4j_A Ring finger protein 38; 1.0 1 1 89.4 2.9 54 1113-1167 20-73 (75)
10 2ep4_A Ring finger protein 24; 1.0 1 1 88.5 4.1 58 1110-1168 9-66 (74)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=363.34 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988323112666864421133221352388425800005658887761234611136656545589987876678976
Q 000881 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1239)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~v~C~~C~~~q~~~~~C~~~~C~~~~ 1054 (1239)
|-.|+|+|++++++||+||+|+|+|+||||++|||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCC--C-CCC
T ss_conf 8888643434576788366888617888789814614420334556643110504442356760654673887--7-862
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 641842444576799950147999854458988844212577653224444-322233577778
Q 000881 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1239)
Q Consensus 1055 ~a~y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~ 1117 (1239)
|++|||+||||||++|+||||++|||||||+ ++|||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CEEEEECEEECCCCCCCEECCCCCCCEECCC--CCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0106711004355778604278887324468--7576788918823635657674657667668
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=185.58 Aligned_cols=72 Identities=36% Similarity=0.613 Sum_probs=69.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 989996726714676636999961299856530577265268899888874234124788889655310024
Q 000881 1157 CPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE 1228 (1239)
Q Consensus 1157 CPiCrksi~dm~~~~~~lD~~i~~~pmP~ey~~~~~~I~CnDC~~~s~~~~H~lg~kC~~CgSYNT~~~~~~ 1228 (1239)
||+|+|+++||+.+|++||++|+++|||++|++++++|+||||++++.++|||+||||+.|+||||++++-.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGR 72 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCC
T ss_conf 983541699999999999999985789989959793789999998752774030256869989485766788
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=116.65 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------H
Q ss_conf 74478899999999999999999999641269-92109999999999999977653111244003246666--------4
Q 000881 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1239)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~~~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~--------~ 361 (1239)
..+|+.|...|+.+|+.+..|...+..+...+ +...+..+...+.+|...+..||..|++++||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 21999999999999999999999999998759983999999999999987798777407888519998638514489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 28849999999999999999886309998708999999999999999999868989999999998209999999999957
Q 000881 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1239)
Q Consensus 362 me~EH~~ie~lle~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~evfPLl~k~fS~eEq~~L~~~~ 441 (1239)
|..||..+...++.+...+..+........ ....+..+...+..|+.+||+ +||++.+.+|.++|.+|+.++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~-------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVP-------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999999999999999876997743-------499999999999999999877-779999769999999999999
Q ss_pred H
Q ss_conf 3
Q 000881 442 L 442 (1239)
Q Consensus 442 l 442 (1239)
.
T Consensus 167 ~ 167 (172)
T 2p0n_A 167 A 167 (172)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 4
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=114.39 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HHHHH
Q ss_conf 897367899999999999999999986403799954199999999999999988510564532054764344---57988
Q 000881 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVK---NIART 117 (1239)
Q Consensus 41 ~~Pi~~~~~iHkAlRreL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~l~~~~~~H~~aEDevI~PaL~~Rv~---~v~~~ 117 (1239)
+.||+.+.--|+.+|+.+..|..++..+.....+......+.+-++++...++.||..|++++||+|..+.+ +++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 21999999999999999999999999998759983999999999999987798777407888519998638514489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 976454276989999999985301934--89999999998788889786699899986688510899999999997741
Q 000881 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1239)
Q Consensus 118 ~~~EH~~~~~l~~~L~~~l~~~~~~~~--~~~~eLa~~i~~l~~~l~qHl~~EE~qv~PLl~~~fS~~E~a~L~~~~~~ 194 (1239)
+..||.....+++.|...+..+..+.. ... ..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~~----~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPDE----EAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999987699774349----9999999999999999877-77999976999999999999997
No 5
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=113.71 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH------
Q ss_conf 744788999999999999999999996412699----2109999999999999977653111244003246666------
Q 000881 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1239)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~~~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1239)
-+|++.|...|++|++.|..|...+.++..... ...+..+...+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998788763125766638999849987892
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 42884999999999999999988630999870899999999999999999986898999999999820999999999995
Q 000881 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1239)
Q Consensus 361 ~me~EH~~ie~lle~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~evfPLl~k~fS~eEq~~L~~~ 440 (1239)
.|..||.++..++..+..++..... . + . .+.+..+...+..+...+.+|+.+||+.+||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~-~-~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M-P-W-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-C-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 6777769999999999999845456-6-4-1-568999999999999999999999998899999986899999999826
Q ss_pred HHH
Q ss_conf 730
Q 000881 441 SLC 443 (1239)
Q Consensus 441 ~l~ 443 (1239)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 762
No 6
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=99.88 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99245999999999997999999722235789-----2239999999999999999-87611000024233232234545
Q 000881 643 SRPIDNIFKFHKAIRKDLEYLDGESGKLNDCN-----ETFLRQFTGRFRLLWGLYR-AHSNAEDDIVFPALESKETLSNV 716 (1239)
Q Consensus 643 ~~PId~i~~~HkAIRkDLe~l~~~~~kL~~~d-----~~~l~~f~~rf~~L~~v~~-~HS~AEDeivfPALe~k~~~~nv 716 (1239)
-+||+.+..=|++|++.|..|...+.++.... ...+..+...|.+|.. +. .|..-|++++||.|++. +....
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~-g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERR-GLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTT-TCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998-78876312576663899984-99878
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54431115789888988999887665542302467677543364322220256763799999999999999999988657
Q 000881 717 SHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVF 796 (1239)
Q Consensus 717 s~s~~~EH~~ee~lfedi~~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~kL~~~~ksl~~~L~~Hi~ 796 (1239)
...+..||.++..++..+..++.... . . .....+..|...+ +.+...+.+||+
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~--------~-~--------------~~~~~~~~~~~~l----~~~~~~l~~Hi~ 138 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKRE--------E-M--------------PWEEFVEKFKAKA----GEVAFALSDMVF 138 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGG--------G-S--------------CHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC--------C-C--------------CHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 92677776999999999999984545--------6-6--------------4156899999999----999999999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 665634358862099999999999
Q 000881 797 REELELWPLFDRHFSVEEQDKIVG 820 (1239)
Q Consensus 797 ~EE~ElfPL~~k~fS~eeQ~~Lv~ 820 (1239)
.||.-|||.+.+.||.++|.+|--
T Consensus 139 kEe~iLfP~a~~~ls~~dw~~i~~ 162 (369)
T 3cax_A 139 RENNIFYPTLKALLSEGEWKAIKM 162 (369)
T ss_dssp HHHHTHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999889999998689999999982
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=91.04 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCC--------------CCCEECCCCCCCCHHHHHHHH-----HCCCCCCCCCCCCCCH
Q ss_conf 777787854322344687--------------841453889825911299765-----1699998999672671
Q 000881 1113 KGLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1167 (1239)
Q Consensus 1113 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~C~~~w~-----~~~~~CPiCrksi~dm 1167 (1239)
...+..||||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999684078100374443332223455752135229979960499999999703677898699999823777
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=90.28 Aligned_cols=53 Identities=30% Similarity=0.804 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 777787854322344687841453889825911299765169999899967267
Q 000881 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1239)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~d 1166 (1239)
...+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCCCCCHH-HCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6899988436902-1589827962799948999999999769968380940799
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=89.36 Aligned_cols=54 Identities=31% Similarity=0.702 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 7777878543223446878414538898259112997651699998999672671
Q 000881 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1239)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~dm 1167 (1239)
......|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCEECCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6799989388935-27998699878998757999999997499390708807888
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.47 Aligned_cols=58 Identities=24% Similarity=0.646 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 33577778785432234468784145388982591129976516999989996726714
Q 000881 1110 CREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1239)
Q Consensus 1110 C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~dm~ 1168 (1239)
-.+...+..|+||++. +.....+..+||||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 9 VKELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCCCCCCCCCC-CCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 3268999989577920-179972787089998549999999985996979593416611
Done!