Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>000882
MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEM
LKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL
KQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT
KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ
ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ
ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN
GNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQIL
QSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ
PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIR
HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH
FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL
MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA
VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQL
KRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSF
CKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLA
NMIYPVLLETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYK
ALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLL
WQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCS
DKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGK
SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENLRR

High Scoring Gene Products

The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  000882
        (1238 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras...  2710  0.        3
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras...   449  1.6e-78   4
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg...   423  3.1e-55   5
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym...   381  5.8e-50   6
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ...   365  1.8e-46   4
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c...   361  2.9e-43   5
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ...   332  3.4e-42   4
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol...   418  3.9e-41   4
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer...   355  6.3e-41   4
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme...   334  5.8e-40   5
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd...   324  1.9e-39   4
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme...   352  3.0e-39   5
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme...   352  5.6e-39   5
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme...   352  5.6e-39   5
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme...   352  5.6e-39   5
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d...   352  5.6e-39   5
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir...   352  5.6e-39   5
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ...   330  1.1e-38   6
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)...   349  1.8e-38   4
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic...   406  5.5e-38   3
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer...   406  5.5e-38   3
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest...   310  1.0e-37   4
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire...   239  1.6e-37   6
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol...   239  1.6e-37   6
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme...   352  1.6e-37   3
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ...   299  2.8e-37   5
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme...   339  7.2e-37   3
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme...   333  3.2e-36   3
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,...   309  4.5e-36   4
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA...   305  1.0e-35   5
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme...   330  3.6e-35   3
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme...   332  4.5e-35   3
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme...   328  5.1e-35   3
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme...   330  7.4e-35   3
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme...   328  1.2e-34   3
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme...   323  2.0e-34   3
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd...   331  8.0e-31   3
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer...   331  8.0e-31   3
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol...   213  3.1e-29   6
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ...   147  5.3e-29   7
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi...   166  9.3e-29   5
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme...   305  6.9e-28   2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym...   165  2.8e-27   7
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab...   149  5.4e-27   7
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase...   187  4.6e-24   6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme...   144  2.9e-21   6
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s...   195  5.5e-21   6
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid...   146  1.7e-20   6
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme...   146  1.7e-20   6
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN...   152  3.1e-20   6
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp...   142  5.7e-20   6
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme...   142  2.0e-19   5
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme...   142  2.2e-19   5
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme...   138  2.8e-19   5
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme...   138  3.4e-19   5
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme...   141  4.5e-19   6
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l...   160  4.8e-18   5
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme...   146  5.7e-14   3
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub...   170  1.3e-06   3
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym...   155  1.2e-05   3
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer...   148  1.3e-05   2
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer...   148  1.3e-05   2
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer...   148  1.3e-05   2
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer...   148  1.3e-05   2
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol...   146  1.3e-05   3
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol...   142  4.6e-05   4
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol...   136  6.3e-05   4
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera...   148  6.7e-05   4
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym...   148  6.7e-05   4
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol...   153  7.3e-05   4
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol...   147  0.00024   3
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol...   140  0.00050   2
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera...   140  0.00051   4
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym...   135  0.00055   4
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol...   135  0.0010    3


>TAIR|locus:2061151 [details] [associations]
            symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=ISS]
            [GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
            [GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
            "DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
            [GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
            "posttranscriptional gene silencing by RNA" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
            "production of siRNA involved in RNA interference"
            evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
            replication" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
            [GO:0016444 "somatic cell DNA recombination" evidence=RCA]
            [GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
            "gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
            evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
            [GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
            "regulation of cell cycle" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
            Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
            EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
            PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
            ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
            STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
            GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
            HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
            PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
            GO:GO:0000419 Uniprot:Q5D869
        Length = 1976

 Score = 2710 (959.0 bits), Expect = 0., Sum P(3) = 0.
 Identities = 547/869 (62%), Positives = 663/869 (76%)

Query:   116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
             EVKE+L+RIPEE+RKKL  KG+ PQ+GYILEYLPVPPNCLSVP+ SDG STMS D S   
Sbjct:   179 EVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIE 238

Query:   176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
             LK VLK+V  I+SSRSG  NFES + E++++   V  YL+VRGTAK++R++D R+GVS+ 
Sbjct:   239 LKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKI 298

Query:   235 DPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
               +S++KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P EIAQRITFEERV+VH
Sbjct:   299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH 358

Query:   295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
             N  YLQ+LVD+KLCL+Y+ GS++YSLR+GSKGHT L+PGQVVHRR+MDGD VFINRPPTT
Sbjct:   359 NRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTT 418

Query:   355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
             HKHSLQAL VYVH+D+TVKINPL+C PLSADFDGDC+HLFYPQSL+AKAEV+ELFSVEKQ
Sbjct:   419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQ 478

Query:   415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSA-R 473
             LLSSH G L LQ+ +D+LLSL+VM ++ FLDKA  QQLAM+    LP PAL K+  S   
Sbjct:   479 LLSSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPA 538

Query:   474 WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
             WT  QILQ   P      GDR+L+  S++LK DF  D + S+INEIVTSIF EKGP+E L
Sbjct:   539 WTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETL 598

Query:   534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKA---ALWN-IQKEIQALYSLLYHRMSTQNE 589
              FFDSLQPLLME+LFA+GFS+SLED S+S+A    + N I +EI  + S L  R+S ++E
Sbjct:   599 GFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRL--RLSYRDE 656

Query:   590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFY 649
             L   Q+EN I  VK + A F+LKS ++  LI               GFLGLQLSD+ KFY
Sbjct:   657 L---QLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFY 713

Query:   650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
             +KTLVED+A   +R Y    +  +  +G++KGCFFHGLDPYEEM HSI+ REVIVRSSRG
Sbjct:   714 TKTLVEDMAIFCKRKYGRISS--SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRG 771

Query:   710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHS-LFPAGEPVGVL 768
             L+EPGTLFKNLMAVLRD+VI  DGTVRN CSNS+IQF Y V++ + H  LF AGEPVGVL
Sbjct:   772 LAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVL 831

Query:   769 AATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYC 828
             AATAMSNPAYKAVLDSSP+SN+SWELMKE+LLC+V+F N   DRRVILYLN+C CG+++C
Sbjct:   832 AATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFC 891

Query:   829 QERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISD----DEGLVGHIHLNKILLEDLRI 884
             QE AA  V+N+L +VSLKD AVEFL+EY+K   IS+    D  L GHIHLNK LL+D  I
Sbjct:   892 QENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNI 951

Query:   885 SMHDILPKCQETLXXXXXXXXXXXXXXXXXNTSLSISECCSFQQSCADKRSNMPCLMFVL 944
             SM DI  KC++ +                  TSLS+SECCSF+  C  K S+MPCL F  
Sbjct:   952 SMQDIHQKCEDVINSLGQKKKKKATDDFK-RTSLSVSECCSFRDPCGSKGSDMPCLTFSY 1010

Query:   945 RGASDSYLDKLSGVLANMIYPVLLETIIK 973
               A+D  L++   VL N +YPVLLE +IK
Sbjct:  1011 N-ATDPDLERTLDVLCNTVYPVLLEIVIK 1038

 Score = 550 (198.7 bits), Expect = 0., Sum P(3) = 0.
 Identities = 123/267 (46%), Positives = 159/267 (59%)

Query:   980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
             QRLSASV MV+KGVLKEH+ILLAN+MTC+G ++GFNSGGYKAL+RSLN++ PFTEATL  
Sbjct:  1130 QRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIA 1189

Query:  1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
             PRKCFEKAAEK HTD+LS+VV +CSWGK V VGTGS+F+LLW  +    +  +  DVY F
Sbjct:  1190 PRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249

Query:  1100 LHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWL-ENK 1158
             L MV S+T  +       G +V   E+  +W+ SPE +    +P FED  + Q+   E K
Sbjct:  1250 LQMVISTTNADAF-VSSPGFDVTE-EEMAEWAESPERDSALGEPKFEDSADFQNLHDEGK 1307

Query:  1159 QENANWDSEAD----CRKSSEDKWEKLGTSLEKPSSGW-RT-----EGAWGKSSDDKLEK 1208
                ANW+  +     C   SE    K       P S W +T     E AW   +  K  +
Sbjct:  1308 PSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDAQ 1367

Query:  1209 AGSPSRKPSGWGTEASWGES-SCDKWE 1234
               S S     WG +    ++ +   WE
Sbjct:  1368 ESSKSDSGGAWGIKTKDADADTTPNWE 1394

 Score = 388 (141.6 bits), Expect = 0., Sum P(3) = 0.
 Identities = 75/124 (60%), Positives = 95/124 (76%)

Query:     1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
             MEE ++S IL+G+IVGI F LA+  EIC  SIS+ +I+H SQL N FLGLPLEFGKCESC
Sbjct:     1 MEEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESC 60

Query:    61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK--LTMYAFQ-LQIK-----NDGVAQRLLS 112
             G +EP KCEGHFGYI+LP+PIYHP+H++ELK  L++   + L+IK     + G+A RLL 
Sbjct:    61 GATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLADRLLG 120

Query:   113 SCCE 116
              CCE
Sbjct:   121 VCCE 124

 Score = 70 (29.7 bits), Expect = 0., Sum P(3) = 0.
 Identities = 25/95 (26%), Positives = 43/95 (45%)

Query:  1151 DQSWLENKQENANWDSEADCRKSSEDK--------WEKLGTSLEKPSSGW------RTEG 1196
             D+  +E   E A W S+   +K+SE +        W+K  +  E   +GW       +E 
Sbjct:  1515 DKKNIETDSEPAAWGSQG--KKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSET 1572

Query:  1197 AWGKSSDDKLEKAGSPSRK-PSGWGTE--ASWGES 1228
               G ++    +K  S ++  P+ WG+   A+WG S
Sbjct:  1573 ELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSS 1607

 Score = 64 (27.6 bits), Expect = 0., Sum P(3) = 0.
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query:  1160 ENANWDSEADCRKSSEDK-WEKLGTSLEKPSSGW-RTEGA-WGKSSDDKLEKAGSPSRKP 1216
             EN    S+    KS  DK W+K     E   + W  T+ A WG SSD K  +  S +   
Sbjct:  1406 ENNEPTSDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWG-SSDKKNSETESDA--- 1461

Query:  1217 SGWGT 1221
             + WG+
Sbjct:  1462 AAWGS 1466

 Score = 63 (27.2 bits), Expect = 0., Sum P(3) = 0.
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:  1165 DSEADCRKSSEDKWEKLGTSLEKPSSGW-RTEGA-WGKS----SDDKLEKA--GSPSRKP 1216
             +SE +   ++   W+K  +  +   + W  T+ A WG S    S+ + + A  GS ++K 
Sbjct:  1569 NSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKT 1628

Query:  1217 S----GWGTEASWGESS 1229
             S    G G   SWG+ S
Sbjct:  1629 SEIESGAGAWGSWGQPS 1645

 Score = 62 (26.9 bits), Expect = 0., Sum P(3) = 0.
 Identities = 24/99 (24%), Positives = 39/99 (39%)

Query:  1156 ENKQENANWDSEADCRKSSE---DKWEKLGTSLEKPSSGWRTEG-----------AWGKS 1201
             E +   A W S +D  KS     + W+K     +   + W ++G           AWG  
Sbjct:  1490 ETESNGATWGS-SDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWG-- 1546

Query:  1202 SDDKLEKAGSPSRKPSGWG------TEASWGESSCDKWE 1234
             + DK +    P   P+GWG      +E   G ++   W+
Sbjct:  1547 AWDKKKSETEPG--PAGWGMGDKKNSETELGPAAMGNWD 1583

 Score = 45 (20.9 bits), Expect = 0., Sum P(3) = 0.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query:  1153 SWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEK-AGS 1211
             +W  + + N+  +S+A    S   K  ++    E  +  W   G+WG+ S    +K    
Sbjct:  1603 AWGSSDKNNSETESDAAAWGSRNKKTSEI----ESGAGAW---GSWGQPSPTAEDKDTNE 1655

Query:  1212 PSRKP 1216
               R P
Sbjct:  1656 DDRNP 1660


>TAIR|locus:2015163 [details] [associations]
            symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0006346 "methylation-dependent chromatin silencing"
            evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
            interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
            evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
            complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
            evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0010495
            "long-distance posttranscriptional gene silencing" evidence=IMP]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
            methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009616 "virus induced gene silencing"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016569 "covalent chromatin
            modification" evidence=RCA] [GO:0031048 "chromatin silencing by
            small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
            in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
            GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
            GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
            EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
            PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
            UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
            DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
            EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
            KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
            HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
            PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
            GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
            Uniprot:Q9LQ02
        Length = 1453

 Score = 449 (163.1 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
 Identities = 132/399 (33%), Positives = 209/399 (52%)

Query:   196 FESQEVESNDLQLAVGQYLEVRG-TAKSSRDVDARFGVSQDPNSTTK-AWLEKMRTLFIR 253
             FE   +E +   +   QY  +   T  SS+D    +   Q  + T K   L  M+ + + 
Sbjct:   259 FEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY---QKKSDTPKLCGLRFMKDVLLG 315

Query:   254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN-----INYLQELVDNKLC 308
             K S  + R+V+ GD   ++NEIG+P  IA+R+   E +N  N      +++  L+DNK  
Sbjct:   316 KRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKE- 374

Query:   309 LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-H 367
             +    G    +++        L+ G  + R +MDGDTV +NRPP+ H+HSL A++V +  
Sbjct:   375 MHVRRGDRLVAIQVND-----LQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILP 429

Query:   368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
                 V +NP+ C P   DFDGDC+H + PQS+ AK E+ EL +++KQL++  NG   L L
Sbjct:   430 TTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489

Query:   428 ATDALLS--LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSA---RWTALQILQS 482
               D+L +  L  + K  +L++A  QQL M+    LP PA+ KA  S+   +WT +Q+   
Sbjct:   490 GQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGM 549

Query:   483 VLPPGFDSCG--DRYLIKKSEVL---KGD-FDRDTIPSVINEIVTSIFFEKGPEEVLEFF 536
             + PPGFD     +  ++   E+L   +G  + RD   + I  ++     +KG  +VL+  
Sbjct:   550 LFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKH---DKG--KVLDII 604

Query:   537 DSLQPLLMENLFADGFSVSLEDFSLSK--AALWNIQKEI 573
              S Q +L + L   G SVSL D  LS    +  N+ +EI
Sbjct:   605 YSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEI 643

 Score = 240 (89.5 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
 Identities = 80/308 (25%), Positives = 140/308 (45%)

Query:   676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTV 735
             YG+I+  F  GL+P E   HS+++R+     +  L  PGTL + LM  +RD+   YDGTV
Sbjct:   793 YGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLSRRLMFFMRDIYAAYDGTV 850

Query:   736 RNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELM 795
             RN   N ++QF Y  +          GE +G L+A A+S  AY A LD   S   +  L+
Sbjct:   851 RNSFGNQLVQFTYETDGPVEDI---TGEALGSLSACALSEAAYSA-LDQPISLLETSPLL 906

Query:   796 --KEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFL 853
               K +L C         ++ + LYL++    +K+  E  +  +KN L+++S  +     +
Sbjct:   907 NLKNVLEC--GSKKGQREQTMSLYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSM 964

Query:   854 IEYKKPEIISDD-EGLVGHIHLNKILLEDLRISMHDILPKCQETLXXXXXXXXXXXXXXX 912
             I +             V H H+++ +L+  ++S   ++    E                 
Sbjct:   965 IIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLD 1024

Query:   913 XXNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETII 972
               NT+     C S  Q+  D   N+   + V+  +  S L+ L  +   +I P LL++ +
Sbjct:  1025 IQNTN----HCSSDDQAMKD--DNVCITVTVVEASKHSVLE-LDAIRLVLI-PFLLDSPV 1076

Query:   973 KENWWVRQ 980
             K +  +++
Sbjct:  1077 KGDQGIKK 1084

 Score = 197 (74.4 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
 Identities = 41/124 (33%), Positives = 70/124 (56%)

Query:   982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
             L ++V+   K +L+EHL+L+A+S++  G+ V  N+ G+    +  +   PFT+A    P 
Sbjct:  1167 LESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPS 1226

Query:  1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
             +CF KAA++   D+L   + A +WGK    GTG +F+++   +   F     VDVYD L 
Sbjct:  1227 QCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTP--VDVYDLLS 1284

Query:  1102 MVRS 1105
               ++
Sbjct:  1285 STKT 1288

 Score = 102 (41.0 bits), Expect = 1.6e-78, Sum P(4) = 1.6e-78
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query:    12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
             G +  I F ++   +    S+ +  +   +Q+ +  LGLP     C +CG+ +   CEGH
Sbjct:    13 GTLTSIGFSISNNNDRDKMSVLE--VEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGH 70

Query:    72 FGYIELPIPIYHPSHISEL 90
             FG I     I +P  + E+
Sbjct:    71 FGVINFAYSIINPYFLKEV 89

 Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query:    31 SISDCSISHASQLANPFLGLPLEFGKCESC-GTSEPGKCEGHFGYIELPIPIYHPSHISE 89
             S+S C++S A+  A   L  P+   +           +C    G  E  + +Y   ++S+
Sbjct:   879 SLSACALSEAAYSA---LDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSK 935

Query:    90 LKLTMYAFQLQIKN 103
              K       L+IKN
Sbjct:   936 KKHGFEYGSLEIKN 949


>POMBASE|SPBC28F2.12 [details] [associations]
            symbol:rpb1 "RNA polymerase II large subunit Rpb1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IC] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IC] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
            GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
            RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
            MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
            GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
            EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
        Length = 1752

 Score = 423 (154.0 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
 Identities = 147/488 (30%), Positives = 225/488 (46%)

Query:   102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDI 160
             ++D   +RLLS   EV  +   I  E    L   + Y   D  I+  LPVPP  +  P I
Sbjct:   199 ESDLPEKRLLSPL-EVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVR-PSI 256

Query:   161 S-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVR 217
             S DG S    DL+  +   +     + R  + G P     E E   LQ  V  Y+  E+ 
Sbjct:   257 SVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL-LQFHVATYMDNEIA 315

Query:   218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
             G  ++ +        S  P  + +A L+    ++R   + K   FS+R+VITGD    ++
Sbjct:   316 GQPQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 368

Query:   274 EIGVPFEIAQRITFEERVNVHNINYLQELV----DNKLCLTY--SDGSSSYSLREGSK-G 326
             E+GVP  IA+ +T+ E V  +NI  LQELV    D      Y   D      LR   + G
Sbjct:   369 ELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAG 428

Query:   327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                LR G  V R I DGD V  NR P+ HK S+    + V    T ++N  +  P +ADF
Sbjct:   429 DIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADF 488

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
             DGD +++  PQS   +AE+ E+  V KQ++S  +    + +  D L  + K   +  FL 
Sbjct:   489 DGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLT 548

Query:   446 KAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR-------- 494
             +     + ++       LP P + K +    WT  QIL  ++P G +   D         
Sbjct:   549 RNAVMNIMLWVPDWDGILPPPVILKPK--VLWTGKQILSLIIPKGINLIRDDDKQSLSNP 606

Query:   495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
                  LI+  E++ G  D+ T+ +    +V +I+ EKGPE    FF+ +Q ++   L  +
Sbjct:   607 TDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHN 666

Query:   551 GFSVSLED 558
             GFS+ + D
Sbjct:   667 GFSIGIGD 674

 Score = 179 (68.1 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
 Identities = 65/270 (24%), Positives = 121/270 (44%)

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI+  E++ G  D+ T+ +    +V +I+ EKGPE    FF+ +Q ++   L  +GFS+ 
Sbjct:   612 LIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIG 671

Query:   556 LEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIE---NHI 599
             + D       +  + + +        + +    ++R+      T  E  + ++    N  
Sbjct:   672 IGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQA 731

Query:   600 RHVKMLVAKFILK-SSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
             R      A+  LK S+ +  ++                 +G Q+ + GK           
Sbjct:   732 RDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVE-GKRIPFGFKYRTL 790

Query:   659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
              HF    P D + P ++ G I+  +  GL P E   H+++ RE ++ ++   +E G + +
Sbjct:   791 PHF----PKDDDSPESR-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 845

Query:   719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
              L+  + DV++ YDGTVRN   + IIQF Y
Sbjct:   846 RLVKAMEDVMVRYDGTVRNAMGD-IIQFAY 874

 Score = 107 (42.7 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query:    17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLG-LPLEFGKCESCGTSEP 65
             ++FG+ + +EI + S++      ++  + Q      L +P LG +  +F KC++CG +  
Sbjct:    19 VQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQF-KCQTCGETM- 76

Query:    66 GKCEGHFGYIELPIPIYHPSHISELK 91
               C GHFG+IEL  P++H   +S++K
Sbjct:    77 ADCPGHFGHIELAKPVFHIGFLSKIK 102

 Score = 56 (24.8 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             V AR   ++   GE VG LAA ++  PA +  L++
Sbjct:  1052 VEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNT 1086

 Score = 56 (24.8 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query:   510 DTIPSVI----NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS--LEDFSLSK 563
             D +PS I    NE++  +   +G + +     +   LL + L    F+V   + ++ L+K
Sbjct:   983 DLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNK 1042

Query:   564 AALWNIQKEIQALY 577
              A   I  E++A +
Sbjct:  1043 VAFEWIMGEVEARF 1056

 Score = 52 (23.4 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
 Identities = 20/83 (24%), Positives = 31/83 (37%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL + MT  G L+     G         ++  F E       +    AA     D+ 
Sbjct:  1373 HLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETV-----EILMDAAASGEKDDC 1427

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
               +      G+   +GTG+ FD+
Sbjct:  1428 KGISENIMLGQLAPMGTGA-FDI 1449


>POMBASE|SPBC651.08c [details] [associations]
            symbol:rpc1 "DNA-directed RNA polymerase III complex
            large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
            pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
            EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
            GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
            GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
            ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
            GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
        Length = 1405

 Score = 381 (139.2 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 109/364 (29%), Positives = 176/364 (48%)

Query:   141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQ 199
             +  +  Y+P PP C+  P ++   +T   DL++  + +++    +IR++ S GTP     
Sbjct:   244 ENLLWRYVPAPPVCIR-PSVAQEGATTEDDLTVK-ITEIIWTSSLIRAALSKGTPISNLM 301

Query:   200 EVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
             E +   +QL++  Y+  E+ G   S        G  Q      K    + R     K   
Sbjct:   302 E-QWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQ----RLKGKQGRFRGNLSGKRVD 356

Query:   258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL----TYS- 312
             FS R+VI+ D   R++++ VP+ IA+ +TF ERV   N  +LQ+ + N   +     Y  
Sbjct:   357 FSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVI 416

Query:   313 DGSSSYS--LREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
             D  S +   LR G++      L+ G +V R + D D V  NR P+ HK S+ A  V V  
Sbjct:   417 DRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRP 476

Query:   369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
               T++ N  +CGP +ADFDGD ++L  PQ+  AK E LEL  ++  L+S  NG   +   
Sbjct:   477 WRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAAT 536

Query:   429 TDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQS 482
              D + +  ++  K  FLD+     +  + +       LP PA+ K RC   WT  Q+   
Sbjct:   537 QDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCL--WTGKQVFTV 594

Query:   483 VLPP 486
             ++ P
Sbjct:   595 LMKP 598

 Score = 135 (52.6 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query:   671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
             +P AK G +   F+ GL P E + H+IS RE +V ++   +E G + + LM  L D+   
Sbjct:   821 HPLAK-GFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSA 879

Query:   731 YDGTVRNVCSNS-IIQFDY 748
             YDGTVR+  SNS ++QF Y
Sbjct:   880 YDGTVRS--SNSDVVQFVY 896

 Score = 90 (36.7 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             C +CG S    C GHFGY++L +P++H   I   K T+   Q  I  D     +L S  E
Sbjct:    66 CATCGESM-ADCMGHFGYVKLALPVFH---IGYFKATLTILQ-NICKD--CSSVLLSDQE 118

Query:   117 VKEMLK 122
              ++ LK
Sbjct:   119 KRQFLK 124

 Score = 90 (36.7 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 29/103 (28%), Positives = 48/103 (46%)

Query:   987 TMVAKGVLKE--HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
             TM   G+  +  H++LL + MTC G+++G    G   +  S+     F + T  +    F
Sbjct:  1288 TMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHL----F 1343

Query:  1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
               AA +   D++  +      GK   +GT   F L+ +TE EE
Sbjct:  1344 NAAA-RFAKDSIEGISECIVLGKLAPIGTNV-FQLIRRTEEEE 1384

 Score = 66 (28.3 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 24/83 (28%), Positives = 37/83 (44%)

Query:   493 DRYL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
             D YL I+ SE++ G  D+  +     + +   I  + G  E  E    L  +    L   
Sbjct:   629 DGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNR 688

Query:   551 GFSVSLEDFSLSKAALWNIQKEI 573
             GFS+ +ED    K+   + QKEI
Sbjct:   689 GFSIGIEDVQPGKSL--SSQKEI 709

 Score = 43 (20.2 bits), Expect = 6.0e-12, Sum P(5) = 6.0e-12
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query:   132 LAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
             L  K Y   D +I++Y      C   P + D  +T+ + +S + L KV   V  I     
Sbjct:   710 LVNKAYATSDDFIMQYAKGILECQ--PGM-DQEATLEAKIS-STLSKVRDDVGEICMDEL 765

Query:   192 GTPN 195
             G  N
Sbjct:   766 GPAN 769

 Score = 42 (19.8 bits), Expect = 5.8e-50, Sum P(6) = 5.8e-50
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query:   830 ERAAYMVKNQLKRVSLKD 847
             ER+A +VK ++++  LKD
Sbjct:  1108 ERSARVVKGRIEKTYLKD 1125


>SGD|S000002299 [details] [associations]
            symbol:RPO21 "RNA polymerase II largest subunit B220"
            species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
            RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
            GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
            GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
            eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
            PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
            PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
            PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
            PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
            PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
            PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
            PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
            PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
            PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
            PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
            PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
            PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
            PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
            PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
            PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
            PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
            PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
            PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
            PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
            PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
            PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
            PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
            PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
            PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
            PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
            PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
            PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
            PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
            PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
            PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
            PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
            PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
            IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
            PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
            KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
            EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
            Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
        Length = 1733

 Score = 365 (133.5 bits), Expect = 1.8e-46, Sum P(4) = 1.8e-46
 Identities = 136/477 (28%), Positives = 218/477 (45%)

Query:   109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTM 167
             R+LS+  E+  + K I  +    L     F +  + IL  LPVPP  +  P IS   S  
Sbjct:   200 RVLSTE-EILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVR-PSISFNESQR 257

Query:   168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDV 226
               D     L  +LK  + +     +G P+   +E ES  LQ  V  Y++    A   + +
Sbjct:   258 GEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMD-NDIAGQPQAL 315

Query:   227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
                    +   +  K    ++R   + K   FS+R+VI+GD    ++++GVP  IA+ +T
Sbjct:   316 QKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLT 375

Query:   287 FEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRR 339
             + E V  +NI+ L +LV N             D      LR   + G   L+ G  V R 
Sbjct:   376 YPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERH 435

Query:   340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
             IMD D V  NR P+ HK S+ A  V V    T ++N  +  P +ADFDGD ++L  PQS 
Sbjct:   436 IMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 495

Query:   400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS 458
               +AE+ +L +V  Q++S  +    + +  D L  + K+  +  F++    Q L M    
Sbjct:   496 ETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNMLYWV 553

Query:   459 P-----LPRPALSKARCSARWTALQILQSVLPPG-----FD------SCGDR-YLIKKSE 501
             P     +P PA+ K +    W+  QIL   +P G     FD      S  D   LI   +
Sbjct:   554 PDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQ 611

Query:   502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
             ++ G  ++ T+ S    ++  +  EKGP+   + F ++Q ++   L  +GFS  + D
Sbjct:   612 IIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668

 Score = 166 (63.5 bits), Expect = 1.8e-46, Sum P(4) = 1.8e-46
 Identities = 63/270 (23%), Positives = 118/270 (43%)

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPL----LMENLFADG 551
             LI   +++ G  ++ T+ S    ++  +  EKGP+   + F ++Q +    L+ N F+ G
Sbjct:   606 LIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTG 665

Query:   552 FSVSLED----------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
                ++ D           + +K  + ++ KE QA      H M+ +    D  ++  N  
Sbjct:   666 IGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 725

Query:   600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
             R     +A+  LK  + +  ++                 +G Q S  GK  +   V+   
Sbjct:   726 RDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQ-SVEGKRIAFGFVDRTL 784

Query:   659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
              HF +    D   P +K G ++  +  GL P E   H++  RE ++ ++   +E G + +
Sbjct:   785 PHFSK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839

Query:   719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
              L+  L D+++ YD T RN   N +IQF Y
Sbjct:   840 RLVKALEDIMVHYDNTTRNSLGN-VIQFIY 868

 Score = 87 (35.7 bits), Expect = 1.8e-46, Sum P(4) = 1.8e-46
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query:    43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
             L +P LG      KC++C      +C GHFG+I+L  P++H   I+++K
Sbjct:    53 LNDPRLGSIDRNLKCQTCQEGM-NECPGHFGHIDLAKPVFHVGFIAKIK 100

 Score = 71 (30.1 bits), Expect = 1.8e-46, Sum P(4) = 1.8e-46
 Identities = 39/150 (26%), Positives = 71/150 (47%)

Query:   746 FDYA---VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS-------SPSSNNSWELM 795
             FD+    + A+   S+   GE VGVLAA ++  PA +  L++       S    +    +
Sbjct:  1042 FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRL 1101

Query:   796 KEILLCRVSFN-NDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLI 854
             KEIL   V+ N   P    + +YL     G    QE+A  ++++ ++  +LK   +   I
Sbjct:  1102 KEIL--NVAKNMKTP---SLTVYLEP---GHAADQEQAK-LIRSAIEHTTLKSVTIASEI 1152

Query:   855 EYK---KPEIISDDEGLVGHIHLNKILLED 881
              Y    +  +I +DE ++  +H +  LL++
Sbjct:  1153 YYDPDPRSTVIPEDEEII-QLHFS--LLDE 1179


>DICTYBASE|DDB_G0279193 [details] [associations]
            symbol:rpb1 "RNA polymerase II core subunit"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
            GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
            PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
            KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
            Uniprot:P35084
        Length = 1727

 Score = 361 (132.1 bits), Expect = 2.9e-43, Sum P(5) = 2.9e-43
 Identities = 118/414 (28%), Positives = 197/414 (47%)

Query:    89 ELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEY 147
             +LK+ +  F+  + ++ + ++ + S   V  +LKRI +E  + +     +   D  I   
Sbjct:   186 DLKIIV-EFK-DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATV 243

Query:   148 LPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDL 206
             LPVPP  +  P I    ST   D     L  ++K   E+ R  ++G P     E  +  L
Sbjct:   244 LPVPPPPVR-PSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEA-TQFL 301

Query:   207 QLAVGQYL--EVRGTAKSSRDVDARFGVS-QDPNSTTKAWLEKMRTLFIRKGSGFSSRSV 263
             Q  V  Y+  E+ G  ++ +    R G   +      K    ++R   + K   FS+R+V
Sbjct:   302 QFHVATYVDNEIPGLPQAQQ----RSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTV 357

Query:   264 ITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSS 316
             IT D    ++++GVP  IA  +T+ E V   NI+ ++EL+ N          +   DG+ 
Sbjct:   358 ITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIREDGTR 417

Query:   317 SYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKIN 375
              + LR   K   T L  G  V R I DGD V  NR P+ HK S+    + V    T ++N
Sbjct:   418 -FDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLN 476

Query:   376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
               +  P +ADFDGD ++L  PQ+L  +AEV+E+  V +Q++S  +    + +  D LL  
Sbjct:   477 LSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGS 536

Query:   436 KVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP 485
             ++  K+  F++K     + M+  S    +P PA+ K +    WT  Q+   ++P
Sbjct:   537 RLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPK--QLWTGKQLFSLIIP 588

 Score = 141 (54.7 bits), Expect = 2.9e-43, Sum P(5) = 2.9e-43
 Identities = 68/285 (23%), Positives = 117/285 (41%)

Query:   486 PGFDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
             P   S GD R +I++ E+L G   + ++ +    I+  +  E G +    F D  Q ++ 
Sbjct:   604 PNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVN 663

Query:   545 ENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ-----IENH 598
               L   GF++ + D     A +  +   I +  + +   +   QN+  + Q     IE  
Sbjct:   664 HWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETF 723

Query:   599 IRHVKMLV--AKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGL--------QLSDRGK- 647
              + V  ++  A+    SS    L                 F+ +        Q +  GK 
Sbjct:   724 EQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKR 783

Query:   648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
                 F S+TL      HF +    D +Y     G ++  +  GL P E   H++  RE +
Sbjct:   784 IPFGFQSRTL-----PHFTK----D-DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 833

Query:   704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
             + ++   SE G + + L+  + DV I YD TVRN   + +IQF Y
Sbjct:   834 IDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAY 877

 Score = 90 (36.7 bits), Expect = 2.9e-43, Sum P(5) = 2.9e-43
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:    17 IRFGLATQKEICTASISDCSISH----------ASQLANPFLGLPLEFGKCESC-GTSEP 65
             ++FG+ +  EI   S++   + H          A  L +P +G   +  +C++C GT   
Sbjct:    18 VQFGILSPDEIRNMSVA--RVEHPETYENGKPKAGGLLDPAMGTIDKTQRCQTCSGTM-- 73

Query:    66 GKCEGHFGYIELPIPIYHPSHISE-LKL 92
              +C GHFG+IEL  P++H   I   LK+
Sbjct:    74 AECPGHFGHIELAKPVFHIGFIDTVLKI 101

 Score = 59 (25.8 bits), Expect = 2.9e-43, Sum P(5) = 2.9e-43
 Identities = 24/96 (25%), Positives = 38/96 (39%)

Query:   980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
             + L A ++     V   HL +LA+ MT  G L+     G   +     ++  F E     
Sbjct:  1368 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETV--- 1424

Query:  1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGS 1075
               +    AA    TD++  V      G+   +GTGS
Sbjct:  1425 --EILMDAAMFSETDDVKGVTENIILGQLPPLGTGS 1458

 Score = 53 (23.7 bits), Expect = 2.9e-43, Sum P(5) = 2.9e-43
 Identities = 40/152 (26%), Positives = 64/152 (42%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS----SPSSNN---SWELMKEILLCR 802
             + ++   +L   GE VG LAA ++  PA +  L++      SS N       +KEI+   
Sbjct:  1068 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1127

Query:   803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK-PE- 860
                    +     +YL      R    +RA  +VK+QL+  +L +      I Y   P+ 
Sbjct:  1128 KQVKTPSLT----IYLKP-HMARD--MDRAK-IVKSQLEYTTLANVTSATEIYYDPDPQN 1179

Query:   861 -IISDDEGLVGHIHLNKILLEDLRISMHDILP 891
              IIS+D   V     +   L D  I +H + P
Sbjct:  1180 TIISEDAEFVN----SYFELPDEEIDVHSMSP 1207


>FB|FBgn0030687 [details] [associations]
            symbol:CG17209 species:7227 "Drosophila melanogaster"
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
            ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
            EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
            FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
            GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
        Length = 1383

 Score = 332 (121.9 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
 Identities = 135/472 (28%), Positives = 208/472 (44%)

Query:    56 KCESCGTSEPGKCEG-------HFGYIELPIPIYHPSHISE-LKLTMYAFQLQ--IKNDG 105
             KC  CG+   G  +G       H  Y    +     S+++E L+ T     L   + N  
Sbjct:   153 KCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYS 212

Query:   106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDIS 161
              A+ L      V ++ ++IP+   + +A  G    D +    I+  + VPP C+    +S
Sbjct:   213 TAEELTPLM--VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLS 267

Query:   162 D-GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG 218
             +    T   DL++    ++L   ++I+   +     E    + + LQL V  Y   E+ G
Sbjct:   268 EVKAGTTEDDLTMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISG 326

Query:   219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
                +        G+ Q      K    + R     K   FS R+VI+ D    +N++GVP
Sbjct:   327 IPINMAPKKTTRGIVQ----RLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVP 382

Query:   279 FEIAQRITFEERVNVHNINYLQELVDNKLCL----TYSD--GSS-----SYSLREGSKGH 327
               +A+ +T+ ERVN  NI +++ELV N   +     Y    GSS     +Y  RE  K  
Sbjct:   383 VRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVA 440

Query:   328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
               L+ G VV R + DGD V  NR P+ HK S+      V    T + N   C P +ADFD
Sbjct:   441 QELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFD 500

Query:   388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
             GD ++L  PQ+  A+AE L L   +  L++  NG + +    D +    ++ +K  FL K
Sbjct:   501 GDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTK 560

Query:   447 AFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDS 490
                 QLA   L+         LP PAL K R    WT  Q+   ++ P  DS
Sbjct:   561 EEAMQLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDS 610

 Score = 131 (51.2 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
 Identities = 35/109 (32%), Positives = 58/109 (53%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFER   +    P A+ G ++  F+ GL P E   H+++ RE +V ++   +E G L + 
Sbjct:   818 HFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRR 872

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
             L+  L D+V+ YDGTVRN   N ++   Y  +     S+    +PV ++
Sbjct:   873 LVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPVDLV 920

 Score = 103 (41.3 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query:     2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
             +E   ++ L  +I  ++FG++   EI       I   ++  A +   P+      +G+  
Sbjct:     3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 62

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
             +   CE+CG     +C GHFGY++L +P++H  H
Sbjct:    63 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 95

 Score = 78 (32.5 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
 Identities = 31/113 (27%), Positives = 52/113 (46%)

Query:   979 RQRLSASVTMVAKG----VLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTE 1034
             R  + + +T V +G    V   H++LLA+ MT  G+++G    G   +  S+     F +
Sbjct:  1257 RTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEK 1316

Query:  1035 ATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
                 +    F+ AA    TD ++ V      G    +GTG  F LL Q E+++
Sbjct:  1317 TADHL----FD-AAYYGQTDAINGVSERIILGMPACIGTGI-FKLLQQHEDKQ 1363

 Score = 55 (24.4 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query:   729 ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
             +C+   +  + +  ++QF   +N R + ++   G  VG +AA ++  P  +  L
Sbjct:   991 LCHQ--IECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 1042

 Score = 44 (20.5 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query:   494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
             R L+K  E L   +D  T+ + +NE+V +I+   G + V
Sbjct:   871 RRLVKCLEDLVVHYD-GTVRNAVNEMVDTIYGGDGLDPV 908

 Score = 42 (19.8 bits), Expect = 4.8e-33, Sum P(5) = 4.8e-33
 Identities = 14/66 (21%), Positives = 29/66 (43%)

Query:   551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIEN-H----IRHVKML 605
             G  ++L+ F  +  A  NI + +  +  ++    +    ++  ++EN H     R VK  
Sbjct:  1037 GTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKAR 1096

Query:   606 VAKFIL 611
             + K  L
Sbjct:  1097 IEKTTL 1102

 Score = 39 (18.8 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
 Identities = 16/81 (19%), Positives = 24/81 (29%)

Query:   854 IEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLXXXXXXXXXXXXXXXX 913
             IE  K   +    G      L  ++L +L          C   L                
Sbjct:   726 IELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKG 785

Query:   914 XNTSLSISECCSFQQSCADKR 934
              N ++S    C  QQ+ + KR
Sbjct:   786 SNINISQMIACVGQQAISGKR 806


>UNIPROTKB|G4MT89 [details] [associations]
            symbol:MGG_04652 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
            GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
            EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
            Uniprot:G4MT89
        Length = 1757

 Score = 418 (152.2 bits), Expect = 3.9e-41, Sum P(4) = 3.9e-41
 Identities = 146/520 (28%), Positives = 237/520 (45%)

Query:    83 HPSHISELKLTMYAFQLQIKNDGVAQRLLSSCC---EVKEMLKRIPEETRKKLA-GKGYF 138
             HP  I +  L +YA   + + +G+ + +        +   +LK IPE+   K+   K Y 
Sbjct:   182 HPD-IRKKALQLYAKVEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYA 240

Query:   139 PQDGYILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTP 194
               +  I+  LPVPP  +  P IS DG S  M S  DL+  +   +     + ++   G P
Sbjct:   241 RPEWLIVTVLPVPPPPVR-PSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAP 299

Query:   195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
             N    E E   LQ  V  Y++    A   R +       +   +  K    ++R   + K
Sbjct:   300 NHICTEFEEL-LQYHVATYMD-NDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGK 357

Query:   255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KL 307
                FS+R+VITGDA   ++E+GVP  IA+ +T+ E V  HNI+ L + V N         
Sbjct:   358 RVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAK 417

Query:   308 CLTYSDGSSSYSLRE-GSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
              +  +DG+    LR   ++G T L  GQ V R ++ GD +  NR P+ HK S+    V V
Sbjct:   418 YIVRTDGTR-IDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRV 476

Query:   367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
                 T ++N  +  P +ADFDGD ++L  PQ+   +AEV EL  V   ++S    +  + 
Sbjct:   477 MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMG 536

Query:   427 LATDALL-SLKVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQS 482
             +  D L  + K+  +  FL K     + ++       +P+PA+ + R   RWT  QI+  
Sbjct:   537 IVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPR--PRWTGKQIISM 594

Query:   483 VLPP------GFD---SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
             V+P       G D      D  LI+  E++ G   +  + +    I+   + E+GP   +
Sbjct:   595 VIPDFVTTHQGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAM 654

Query:   534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
              F +  Q ++   L  +G S+ + D       +  IQ  I
Sbjct:   655 AFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHI 694

 Score = 138 (53.6 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
 Identities = 63/268 (23%), Positives = 109/268 (40%)

Query:   493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
             D  LI+  E++ G   +  + +    I+   + E+GP   + F +  Q ++   L  +G 
Sbjct:   614 DALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGH 673

Query:   553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHR--MSTQNELVDLQIENHIRHVKMLVAKFI 610
             S+ + D       +  IQ  I    + +     ++T N L  L   N     +  V+K +
Sbjct:   674 SIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNIRETFESKVSKAL 733

Query:   611 L----KSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVED--IASHFE-R 663
                  K+ T                        + +S       + +VE   I   F+ R
Sbjct:   734 NTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 793

Query:   664 IYP---MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
               P    D   P A+ G ++  +  GL P E   H+++ RE ++ ++   +E G + + L
Sbjct:   794 TLPHFTKDDFSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 852

Query:   721 MAVLRDVVICYDGTVRNVCSNSIIQFDY 748
             +  L DV   YDGTVRN   + IIQF Y
Sbjct:   853 VKALEDVAAKYDGTVRNSLGD-IIQFIY 879

 Score = 111 (44.1 bits), Expect = 3.9e-41, Sum P(4) = 3.9e-41
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query:    43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
             L +P LG      KC++C  ++   C GHFG+IEL  P+YHP  I++ K
Sbjct:    55 LNDPLLGTTDRQYKCKTCN-NDMNNCPGHFGHIELAKPVYHPGFINKTK 102

 Score = 62 (26.9 bits), Expect = 3.9e-41, Sum P(4) = 3.9e-41
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query:   744 IQFDYAVNARKSH---SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             I FD+ +   +S    S    GE VGVLAA ++  PA +  L++
Sbjct:  1053 IAFDHVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNT 1096

 Score = 48 (22.0 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query:   640 LQLS-DRGKFYSKTL-VEDIASHFERIYPMDL 669
             L+L+ DR K   K L +ED+A+  +  Y  DL
Sbjct:  1207 LRLTLDRQKMLDKNLHIEDVAASIKGAYASDL 1238

 Score = 44 (20.5 bits), Expect = 3.9e-41, Sum P(4) = 3.9e-41
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query:   956 SGVLANMIYPVLLETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFN 1015
             +G    ++ P +LET++  N   R  L   +T+  KG   E      ++ +  GD  G+N
Sbjct:  1460 TGAFEVLLDPKMLETVVSNN--ARMGLMPGLTV--KGSSAEGAATPYDTGSPMGDS-GYN 1514

Query:  1016 SG 1017
              G
Sbjct:  1515 LG 1516

 Score = 44 (20.5 bits), Expect = 3.9e-41, Sum P(4) = 3.9e-41
 Identities = 19/84 (22%), Positives = 32/84 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL + MT  G +      G         ++  F E       +   +AA     D+ 
Sbjct:  1389 HLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETV-----EILLEAAAIGELDDC 1443

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLL 1080
               +      G+   +GTG+ F++L
Sbjct:  1444 RGISENVMLGQLAPMGTGA-FEVL 1466


>ASPGD|ASPL0000054301 [details] [associations]
            symbol:AN0809 species:162425 "Emericella nidulans"
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
            GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
        Length = 1745

 Score = 355 (130.0 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
 Identities = 116/382 (30%), Positives = 177/382 (46%)

Query:   126 EETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSS----DLSIAMLKKVLK 181
             E+ R       Y   +  IL  LPVPP  +  P +  G ST       DL+  + + V  
Sbjct:   228 EDVRIMGLSNDYARPEWMILTVLPVPPPPVR-PSVVVGGSTSGQRGEDDLTYKLAEIVRA 286

Query:   182 QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNST 239
                + R  + G P    +E ES  LQ  +  Y++  + G  K+ +  +      +   S 
Sbjct:   287 NQNVQRCEQEGAPEHVVREFESL-LQYHIATYMDNDIAGQPKAMQKSNRPVKAIR---SR 342

Query:   240 TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
              K    ++R   + K   FS+R+VITGD    ++E+GVP  IA+ +T+ E V  +NI  L
Sbjct:   343 LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKL 402

Query:   300 QELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPP 352
             Q+LV N             D      LR   + G   L  G  V R +MDGD +  NR P
Sbjct:   403 QQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQP 462

Query:   353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
             + HK S+    V V    T ++N  +  P +ADFDGD ++L  PQS  ++AE+ +L  V 
Sbjct:   463 SLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVP 522

Query:   413 KQLLS-SHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRPALSK 467
             + ++S   NG L + +  D L  + K+  +  FL K     + M+       +P PA+ K
Sbjct:   523 QNIVSPQRNGPL-MGIVQDTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFK 581

Query:   468 ARCSARWTALQILQSVLPPGFD 489
              R   RWT  Q++  V P G +
Sbjct:   582 PR--PRWTGKQMISMVFPSGLN 601

 Score = 145 (56.1 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
 Identities = 63/265 (23%), Positives = 116/265 (43%)

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI + +++ G  ++  + +    ++  IF E G +  + FF+  Q ++   L  +GFS+ 
Sbjct:   626 LIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSIG 685

Query:   556 LEDFSLSKAALWNIQKEIQA--LYSLLYHRMSTQNELVDLQIENHIRHV---KMLVAKFI 610
             + D   +   +  I++ ++   L        +TQN+L  L   N +R     K+ VA   
Sbjct:   686 IGDTIPNDQTIQAIEECVRKRKLEVEEITATATQNKLEPLPGMN-VRETFESKVSVALNT 744

Query:   611 LKSSTLGYLIXXXXXXXXXXXXXXXGFLG--LQLSDRGKFYSKTLVED--IASHFE-RIY 665
              +                       G  G  + +S       + +VE   IA  F+ R  
Sbjct:   745 ARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTL 804

Query:   666 PMDL--NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
             P     +Y     G ++  +  GL P E   H+++ RE ++ ++   +E G + + L+  
Sbjct:   805 PHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKA 864

Query:   724 LRDVVICYDGTVRNVCSNSIIQFDY 748
             L +V++ YDGTVRN   + IIQF Y
Sbjct:   865 LEEVMVKYDGTVRNSLGD-IIQFIY 888

 Score = 93 (37.8 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query:    43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
             L +P LG       CE+C   +  +C GHFG+IEL  P++H   ++++K
Sbjct:    55 LNDPRLGTIDRQWNCETCEEGQK-ECPGHFGHIELATPVFHIGFLTKIK 102

 Score = 63 (27.2 bits), Expect = 1.8e-32, Sum P(4) = 1.8e-32
 Identities = 34/108 (31%), Positives = 50/108 (46%)

Query:   687 LDPYEEM--THSISTREVIVRS----SRGLSEPGT-LFKNLMAVLRDVVICYDGTVRNVC 739
             L P E +    S+  R VIVR     S+   E  T LFK   A LR   + +   V    
Sbjct:  1001 LHPAEVIPQVQSLLDRLVIVRGDDPISKEAQESATMLFK---AQLRSR-LAFKRLVTQYS 1056

Query:   740 SNSIIQFDY---AVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
              N +  F +   A+ +R + +    GE VGVLAA ++  PA +  L++
Sbjct:  1057 MNKLA-FQHVLGAIESRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNT 1103

 Score = 48 (22.0 bits), Expect = 6.1e-31, Sum P(4) = 6.1e-31
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query:   645 RGKFYSKTL-VEDIASHFERIYPMDL 669
             R K   K L V+D+A+  ++ YP D+
Sbjct:  1218 RAKLLDKGLTVQDVATKIKQAYPRDI 1243

 Score = 43 (20.2 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
 Identities = 21/83 (25%), Positives = 29/83 (34%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL + MT  G L      G         ++  F E       +   +AA     D+ 
Sbjct:  1393 HLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETV-----EILLEAAAFGELDDC 1447

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
               V      G+    GTG  FD+
Sbjct:  1448 RGVSENLILGQMAPAGTGE-FDI 1469


>ASPGD|ASPL0000047704 [details] [associations]
            symbol:AN10316 species:162425 "Emericella nidulans"
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
        Length = 1445

 Score = 334 (122.6 bits), Expect = 5.8e-40, Sum P(5) = 5.8e-40
 Identities = 119/427 (27%), Positives = 193/427 (45%)

Query:   117 VKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLS 172
             V  + KRI +   + L   G  P++     ++ +++P PP C+  P +    S+   DL+
Sbjct:   240 VLNLFKRISDSDCELL---GLDPKEARPEMFLWQFIPAPPVCIR-PSVGQDASSTEDDLT 295

Query:   173 IAMLKKVLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
               +   V   + +  +   G P     E  +   LQ+AV    +V G  K+      R G
Sbjct:   296 AKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIR-G 354

Query:   232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
               Q      K    + R     K   FS R+VI+ D   RV+E+ VP  +A+ +T+ E V
Sbjct:   355 FVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVV 410

Query:   292 NVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRR 339
             N +N   LQ+ V N          ++Y +++G+   T L+             G +V R 
Sbjct:   411 NRYNKEKLQQCVRNG---QKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERH 467

Query:   340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
             I DGD V  NR P+ HK S+ +    V    T ++N  +C P +ADFDGD ++L  PQ+ 
Sbjct:   468 IEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query:   400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS 458
              A+AE +EL  V+  L +  NG   +    D + +  ++  K  F D+    Q+ ++ L 
Sbjct:   528 EARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLG 587

Query:   459 P-----LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLI------KKSEVLKGDF 507
             P     LP PA+ K +    WT  Q+   ++ P  D   D  L+      K+ +  KG+ 
Sbjct:   588 PQTRFDLPPPAVFKPQML--WTGKQVFNILMRPNKD---DPVLVNLDAACKQFKPPKGNQ 642

Query:   508 DRDTIPS 514
              RD  P+
Sbjct:   643 PRDLDPN 649

 Score = 152 (58.6 bits), Expect = 5.8e-40, Sum P(5) = 5.8e-40
 Identities = 70/276 (25%), Positives = 117/276 (42%)

Query:   493 DRYLI-KKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFAD 550
             D +L+ + SEV+ G  D+ T+ S   + V  I     GP    E  + L  L        
Sbjct:   650 DSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNM 709

Query:   551 GFSVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMSTQNELV---DLQ-IENHIRH 601
             GFS+ + D   S   + +    ++A Y+     +  ++  T  +     +LQ +EN +  
Sbjct:   710 GFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSG 769

Query:   602 V--KM-------LVAKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKT 652
             +  K+        +A+    +S L  +                  +G Q+   G+     
Sbjct:   770 ILSKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDG 827

Query:   653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
               +    HF    P +   P +K G ++  FF GL PYE + H++S RE +V ++   +E
Sbjct:   828 FQDRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAE 882

Query:   713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
              G + + LM  L D+   YD TVRN  S  I+QF Y
Sbjct:   883 TGYMSRRLMKSLEDLSTGYDDTVRN-SSQGIVQFQY 917

 Score = 77 (32.2 bits), Expect = 5.8e-40, Sum P(5) = 5.8e-40
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query:    48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
             +G+  +   C++CG +    C GHFG++ L +P +H  +   +
Sbjct:    69 MGISNKTSTCQTCGGALQ-VCNGHFGHVRLVLPAFHVGYFKRV 110

 Score = 68 (29.0 bits), Expect = 5.8e-40, Sum P(5) = 5.8e-40
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             H+ LLA+ MT  G+++G    G   +  S+ +Q+   E T       F+     R TD +
Sbjct:  1333 HMQLLADVMTYKGEVLGITRFGLAKMRDSV-LQLASFEKTA---DHLFDAGGAGR-TDLI 1387

Query:  1057 SSVVAACSWGKHVAVGTGS 1075
               V      GK V++GTG+
Sbjct:  1388 EGVSECIIMGKTVSLGTGA 1406

 Score = 37 (18.1 bits), Expect = 5.8e-40, Sum P(5) = 5.8e-40
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query:   806 NNDPIDRRVILYLNDCG 822
             ++DP D R I  LN  G
Sbjct:  1025 DSDPSDERTIKGLNHTG 1041


>WB|WBGene00004411 [details] [associations]
            symbol:rpc-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
            HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
            ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
            EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
            UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
            NextBio:897062 Uniprot:Q18566
        Length = 1400

 Score = 324 (119.1 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
 Identities = 130/506 (25%), Positives = 220/506 (43%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL-KL-TMYAFQLQIKNDGVAQR--LLS 112
             C  CG    G  +   G + L I    P  + EL K  TM++   ++  D V +    L 
Sbjct:   157 CSHCGLKN-GTVKKAVGAV-LKIAFASPVSVDELGKFATMFSSNQEV-GDHVRKMKFTLL 213

Query:   113 SCCEVKEMLKRIPEETRKKL---AGKGYFPQDGYILEYLPVPPNCLSVPDISD-GVSTMS 168
             +   V+++   I E     L   +G+   P D  +L  +PVPP C+    +S+    T  
Sbjct:   214 NPLFVQKLFSNIKEGDIPVLMVRSGEEKHPND-LLLTRMPVPPVCIRPSVVSEVKAGTTE 272

Query:   169 SDLSIAMLKKVLKQVEIIRSSRSGTPN---FESQEVESNDLQLAVGQYL--EVRGTAKSS 223
              D+++ +++ +L    + +  R G P+   FE+ E     LQ+    Y+  E+ G     
Sbjct:   273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE----HLQIQCALYINSEMSGLPPDM 328

Query:   224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
             +   A    +Q      K    + R     K   FS R+VI+ D   R++++GVP  +A 
Sbjct:   329 QPKRAMRAFTQ----RLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAM 384

Query:   284 RITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQ 334
              +TF E VN  NI  +++LV N          L      +   L+ G +      LR G 
Sbjct:   385 TLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGD 444

Query:   335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
              + R + D D V  NR P+ HK S+ +    V    T + N   C P +ADFDGD ++L 
Sbjct:   445 TIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLH 504

Query:   395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLA 453
              PQ+  AKAE  EL +V+  L++  +G   +    D +    ++  K  FL +A   + A
Sbjct:   505 LPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFA 564

Query:   454 MFALSP---------LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLK 504
                +           +P PA+   R    WT  Q+++ ++ P   S     L  K++   
Sbjct:   565 AALIDASAKKQTKIRIPPPAIR--RPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYT 622

Query:   505 GDFD---RDTIPSVINEIVTSIFFEK 527
             G+ +   +D+   + N ++ +   +K
Sbjct:   623 GNLELCSKDSYVIIRNSVLLAGCLDK 648

 Score = 113 (44.8 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFER        P AK G +   F+ GL P E   H++  RE +V ++   +E G + + 
Sbjct:   816 HFER----KKKTPEAK-GFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRR 870

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQF 746
             L+  L D+   YDGTVR+   + +I+F
Sbjct:   871 LVKCLEDLCASYDGTVRSSVGD-VIEF 896

 Score = 107 (42.7 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query:    45 NPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKN 103
             +P +G+  + G C +CG      C GHFGY +L +P++H   I   KLT+   Q   KN
Sbjct:    58 DPKMGVSTKTGTCSTCGLGLTD-CVGHFGYFDLDVPVFH---IGFFKLTIQLLQCICKN 112

 Score = 74 (31.1 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
 Identities = 31/96 (32%), Positives = 47/96 (48%)

Query:   987 TMVAKGV-L-KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
             TM A G+ L + H++LLA+ MT  G+++G    G   +  S+ +   F E T+      F
Sbjct:  1288 TMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASF-EKTM---DHLF 1343

Query:  1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLL 1080
             E AA     D +  V      G  + VGTG+ F L+
Sbjct:  1344 E-AAFFSQRDVIHGVSECIIMGTPMTVGTGT-FKLM 1377

 Score = 49 (22.3 bits), Expect = 7.6e-33, Sum P(4) = 7.6e-33
 Identities = 43/179 (24%), Positives = 76/179 (42%)

Query:   718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPA 777
             KNL A    ++     T   +CS   I+  Y   AR   ++   G  VG +AAT++  P+
Sbjct:  1004 KNLEAYKTSLLANSCLTKTQLCS--FIELCYYKVAR---AITEPGTAVGAIAATSIGEPS 1058

Query:   778 YKAVLDS----SPSSNNSWE---LMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQE 830
              +  L +      +S N  +    +KEI+   V   + PI    +L   D         E
Sbjct:  1059 TQMTLKTFHFAGVASMNITQGVPRIKEIINA-VKTISTPIITAALLDPYD---------E 1108

Query:   831 RAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDI 889
               A  VK ++++ +L +     + +Y +   + DD  L+  ++  +I L  L + M  I
Sbjct:  1109 SLARRVKARIEKTTLGE-----ICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESI 1162


>UNIPROTKB|J9NW09 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
            Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
        Length = 1789

 Score = 352 (129.0 bits), Expect = 3.0e-39, Sum P(5) = 3.0e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 3.0e-39, Sum P(5) = 3.0e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 3.0e-39, Sum P(5) = 3.0e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 3.0e-39, Sum P(5) = 3.0e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485

 Score = 50 (22.7 bits), Expect = 3.0e-39, Sum P(5) = 3.0e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>UNIPROTKB|F1PGS0 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
            EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
        Length = 1969

 Score = 352 (129.0 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485

 Score = 50 (22.7 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>UNIPROTKB|G3MZY8 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
            EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
            EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
        Length = 1970

 Score = 352 (129.0 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1398 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1452

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1453 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1486

 Score = 50 (22.7 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>UNIPROTKB|P24928 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
            species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=NAS] [GO:0006366
            "transcription from RNA polymerase II promoter"
            evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=TAS]
            [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
            EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
            GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
            PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
            EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
            IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
            UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
            SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
            STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
            PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
            UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
            HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
            HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
            HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
            BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
            EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
            ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
            Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
        Length = 1970

 Score = 352 (129.0 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485

 Score = 50 (22.7 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>MGI|MGI:98086 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
            A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
            GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
            HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
            EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
            UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
            SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
            PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
            Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
            KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
            Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
            GermOnline:ENSMUSG00000005198 Uniprot:P08775
        Length = 1970

 Score = 352 (129.0 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485

 Score = 50 (22.7 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>RGD|1587326 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
            phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
            IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
            UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
            KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
            Uniprot:D4A5A6
        Length = 1970

 Score = 352 (129.0 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96

 Score = 72 (30.4 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 25/95 (26%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +AA    +D +
Sbjct:  1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485

 Score = 50 (22.7 bits), Expect = 5.6e-39, Sum P(5) = 5.6e-39
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + ++ + ++   GE VG LAA ++  PA +  L++
Sbjct:  1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106


>FB|FBgn0003277 [details] [associations]
            symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
            "Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
            chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
            "polytene chromosome" evidence=IDA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
            GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
            EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
            RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
            SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
            STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
            KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
            InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
            GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
            Uniprot:P04052
        Length = 1887

 Score = 330 (121.2 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 126/438 (28%), Positives = 189/438 (43%)

Query:    64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
             +P K  GH G        Y PS I    L + A       D   ++++ S   V E+LK 
Sbjct:   166 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKH 219

Query:   124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
             I +E    L     Y   D  I+  LPVPP  +    +  G +    DL+  +   +   
Sbjct:   220 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKAN 279

Query:   183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
              E+ ++  SG      QE     LQ  V   ++          +      S  P    KA
Sbjct:   280 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVD-----NDMPGMPRAMQKSGKPLKAIKA 333

Query:   243 WLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINY 298
              L+    ++R   + K   FS+R+VIT D   R++++GVP  IAQ +TF E V   NI+ 
Sbjct:   334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDR 393

Query:   299 LQELV--DNKLC--LTY--SDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRP 351
             +QELV   N       Y   D      LR   K     L+ G  V R + D D V  NR 
Sbjct:   394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453

Query:   352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
             PT HK S+    V V    T ++N     P +ADFDGD ++L  PQS+  +AEV  +   
Sbjct:   454 PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHIT 513

Query:   412 EKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSK 467
              +Q+++       + +  D L +++ M K+  F+ +     L MF  +    +P+P + K
Sbjct:   514 PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK 573

Query:   468 ARCSARWTALQILQSVLP 485
              R    WT  QI   ++P
Sbjct:   574 PR--PLWTGKQIFSLIIP 589

 Score = 103 (41.3 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   806 DYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 865

Query:   730 CYDGTVRNVCSNSIIQFDY 748
              YDGTVRN     +IQ  Y
Sbjct:   866 NYDGTVRNSVGQ-LIQLRY 883

 Score = 90 (36.7 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 25/99 (25%), Positives = 48/99 (48%)

Query:     1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL--ANPFLGLPLE----- 53
             M   T S     Q+  ++FG+ +  EI   S+++  +  A  +    P LG  ++     
Sbjct:     1 MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV 60

Query:    54 ---FGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
                  +C++C  +   +C GHFG+I+L  P++H   I++
Sbjct:    61 IDRTSRCQTCAGNMT-ECPGHFGHIDLAKPVFHIGFITK 98

 Score = 70 (29.7 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 34/127 (26%), Positives = 48/127 (37%)

Query:   963 IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
             I+ VL +E + K    V + ++A +      V   HL LL + MT  G L+     G   
Sbjct:  1357 IFQVLGIEAVRKS---VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413

Query:  1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
                   ++  F E            AA    TD +  V      G+   +GTG  FDLL 
Sbjct:  1414 QDTGALMRCSFEETV-----DVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGC-FDLLL 1467

Query:  1082 QTENEEF 1088
               E   F
Sbjct:  1468 DAEKCRF 1474

 Score = 61 (26.5 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 18/87 (20%), Positives = 45/87 (51%)

Query:   490 SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
             S GD + +++  E++ G   + ++ +    ++   F E G +    F+ ++Q ++   L 
Sbjct:   614 SPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLL 673

Query:   549 ADGFSVSLEDFSLSKAALWN-IQKEIQ 574
              +G S+ + D +++    +N IQ+ I+
Sbjct:   674 FEGHSIGIGD-TIADPQTYNEIQQAIK 699

 Score = 53 (23.7 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 34/134 (25%), Positives = 61/134 (45%)

Query:   762 GEPVGVLAATAMSNPAYKAVLDS----SPSSNN---SWELMKEILLCRVSFNNDPIDRRV 814
             GE VG LAA ++  PA +  L++      SS N       +KEI    ++ +  P    +
Sbjct:  1076 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI----INISKKPKAPSL 1131

Query:   815 ILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK-PE--IISDDEGLVGH 871
              ++L   G  R    E+A  ++  +L+  +L+       I Y   P+  +IS+D+  V +
Sbjct:  1132 TVFLTG-GAARD--AEKAKNVLC-RLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFV-N 1186

Query:   872 IHLNKILLEDLRIS 885
             ++      +  RIS
Sbjct:  1187 VYYEMPDFDPTRIS 1200


>ZFIN|ZDB-GENE-041008-78 [details] [associations]
            symbol:polr2a "polymerase (RNA) II (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
            IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
            Uniprot:F1Q9K4
        Length = 1965

 Score = 349 (127.9 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
 Identities = 120/419 (28%), Positives = 195/419 (46%)

Query:    82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
             Y P  I    L +YA    +  D   +++L S   V E+ KRI +E    L     Y   
Sbjct:   184 YQP-RIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARP 242

Query:   141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLS--IAMLKKVLKQVEIIRSSRSGTP-NFE 197
             +  I+  LPVPP  +    +  G +    DL+  +A + K+  Q++  R+ +SG   +  
Sbjct:   243 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLK--RNEQSGAAAHVI 300

Query:   198 SQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
             +++V+     +A     E+ G  ++ +         +      K    ++R   + K   
Sbjct:   301 AEDVKLLQFHVATMVDNELPGLPRAMQKSGRPL---KSIKQRLKGKEGRVRGNLMGKRVD 357

Query:   258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--DNKLC--LTY-- 311
             FS+R+VIT D   +++++GVP  IA  +TF E V   NI+ LQELV   N       Y  
Sbjct:   358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 417

Query:   312 SDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
              D      LR   K     L+ G  V R + DGD +  NR PT HK S+    V +    
Sbjct:   418 RDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWS 477

Query:   371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
             T ++N  +  P +ADFDGD ++L  PQSL  +AE+ EL  V + +++  +    + +  D
Sbjct:   478 TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD 537

Query:   431 ALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP 485
              L +++   K+  FL++     L MF  +    +P+PA+ K R    WT  QI   ++P
Sbjct:   538 TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIFSLIIP 594

 Score = 102 (41.0 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   811 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 870

Query:   730 CYDGTVRNVCSNSIIQFDY 748
              YD TVRN   N ++Q  Y
Sbjct:   871 KYDATVRNSI-NQVVQLRY 888

 Score = 94 (38.1 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
 Identities = 22/84 (26%), Positives = 44/84 (52%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    19 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMT- 77

Query:    67 KCEGHFGYIELPIPIYHPSHISEL 90
             +C GHFG+IEL  P++H   I+++
Sbjct:    78 ECPGHFGHIELAKPVFHVGFITKI 101

 Score = 70 (29.7 bits), Expect = 1.8e-38, Sum P(4) = 1.8e-38
 Identities = 24/95 (25%), Positives = 37/95 (38%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL LL ++MTC G L+     G         ++  F E           +A+    +D +
Sbjct:  1394 HLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV-----DVLMEASSHGESDPM 1448

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
               V      G+    GTG  FDLL   E  ++  +
Sbjct:  1449 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1482

 Score = 53 (23.7 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
 Identities = 27/95 (28%), Positives = 41/95 (43%)

Query:   697 ISTREVIVRS----SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA--- 749
             +S + VIV      SR   E  TL  N+   LR   +C           S   FD+    
Sbjct:  1013 LSKKLVIVNGDDQLSRQAQENATLLFNIH--LRST-LCSKRMTEEF-RLSTEAFDWLLGE 1068

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             +  + + S+   GE VG LAA ++  PA +  L++
Sbjct:  1069 IETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNT 1103


>CGD|CAL0000919 [details] [associations]
            symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
            polymerase activity" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
            GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
            GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
            GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 406 (148.0 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 137/499 (27%), Positives = 229/499 (45%)

Query:   103 NDGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
             ND   +RLL+   E+  + K I PE+  K    + Y   +  ++  LPVPP  +  P I+
Sbjct:   194 NDQPERRLLTPS-EILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIA 251

Query:   162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA 220
                +    D     L  ++K  + + R    G+P     E E+  LQ  V  Y++    A
Sbjct:   252 FNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMD-NDIA 309

Query:   221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
                + +       +   +  K    ++R   + K   FS+R+VI+GD    ++++GVP  
Sbjct:   310 GQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369

Query:   281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
             IA+ +T+ E V  +NI+ L ELV N             D      LR   + G   L+ G
Sbjct:   370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
               V R +MD D V  NR P+ HK S+ A  V V    T ++N  +  P +ADFDGD ++L
Sbjct:   430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489

Query:   394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
               PQS   ++E+ ++ +V  Q++S  +    + +  D L  ++ M  +  F++  + Q +
Sbjct:   490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547

Query:   453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY------- 495
              M    P     +P PA+ K +    WT  Q+L   +P G     FD   D         
Sbjct:   548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI   E++ G  D+ T+ +    ++ ++  EKGP+   E F S+Q ++   L  +GFS+ 
Sbjct:   606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665

Query:   556 LEDFSLSKAALWNIQKEIQ 574
             + D       + ++ K IQ
Sbjct:   666 IGDTIADAQTMRDVNKTIQ 684

 Score = 168 (64.2 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
 Identities = 62/270 (22%), Positives = 117/270 (43%)

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI   E++ G  D+ T+ +    ++ ++  EKGP+   E F S+Q ++   L  +GFS+ 
Sbjct:   606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665

Query:   556 LEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE---NHI 599
             + D       + ++ K IQ         +    ++++      T  E  +  +    N  
Sbjct:   666 IGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQA 725

Query:   600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
             R      A+  LK  + +  ++                 +G Q+ + GK       +   
Sbjct:   726 RDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFGDRSL 784

Query:   659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
              HF +    D   P +K G ++  +  GL P E   H+++ RE ++ ++   +E G + +
Sbjct:   785 PHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 839

Query:   719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
              L+  L D+++ YDGT RN   + IIQF Y
Sbjct:   840 RLVKALEDIMVHYDGTTRNSLGD-IIQFIY 868

 Score = 101 (40.6 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query:    17 IRFGLATQKEICTASIS--------DCSISHASQ--LANPFLG-LPLEFGKCESCGTSEP 65
             ++FGL + +E+   S++        D +     +  L +P LG +   F +C++CG  + 
Sbjct:    18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNF-RCQTCG-EDM 75

Query:    66 GKCEGHFGYIELPIPIYHPSHISELK 91
              +C GHFG+IEL  P++H   I+++K
Sbjct:    76 AECPGHFGHIELAKPVFHIGFIAKIK 101

 Score = 50 (22.7 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             S+   GE VGV+AA ++  PA +  L++
Sbjct:  1057 SIVHPGEMVGVVAAQSIGEPATQMTLNT 1084


>UNIPROTKB|Q5ACI7 [details] [associations]
            symbol:RPO21 "DNA-directed RNA polymerase" species:237561
            "Candida albicans SC5314" [GO:0009267 "cellular response to
            starvation" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
            GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
            STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 406 (148.0 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 137/499 (27%), Positives = 229/499 (45%)

Query:   103 NDGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
             ND   +RLL+   E+  + K I PE+  K    + Y   +  ++  LPVPP  +  P I+
Sbjct:   194 NDQPERRLLTPS-EILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIA 251

Query:   162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA 220
                +    D     L  ++K  + + R    G+P     E E+  LQ  V  Y++    A
Sbjct:   252 FNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMD-NDIA 309

Query:   221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
                + +       +   +  K    ++R   + K   FS+R+VI+GD    ++++GVP  
Sbjct:   310 GQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369

Query:   281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
             IA+ +T+ E V  +NI+ L ELV N             D      LR   + G   L+ G
Sbjct:   370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
               V R +MD D V  NR P+ HK S+ A  V V    T ++N  +  P +ADFDGD ++L
Sbjct:   430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489

Query:   394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
               PQS   ++E+ ++ +V  Q++S  +    + +  D L  ++ M  +  F++  + Q +
Sbjct:   490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547

Query:   453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY------- 495
              M    P     +P PA+ K +    WT  Q+L   +P G     FD   D         
Sbjct:   548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI   E++ G  D+ T+ +    ++ ++  EKGP+   E F S+Q ++   L  +GFS+ 
Sbjct:   606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665

Query:   556 LEDFSLSKAALWNIQKEIQ 574
             + D       + ++ K IQ
Sbjct:   666 IGDTIADAQTMRDVNKTIQ 684

 Score = 168 (64.2 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
 Identities = 62/270 (22%), Positives = 117/270 (43%)

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
             LI   E++ G  D+ T+ +    ++ ++  EKGP+   E F S+Q ++   L  +GFS+ 
Sbjct:   606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665

Query:   556 LEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE---NHI 599
             + D       + ++ K IQ         +    ++++      T  E  +  +    N  
Sbjct:   666 IGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQA 725

Query:   600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
             R      A+  LK  + +  ++                 +G Q+ + GK       +   
Sbjct:   726 RDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFGDRSL 784

Query:   659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
              HF +    D   P +K G ++  +  GL P E   H+++ RE ++ ++   +E G + +
Sbjct:   785 PHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 839

Query:   719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
              L+  L D+++ YDGT RN   + IIQF Y
Sbjct:   840 RLVKALEDIMVHYDGTTRNSLGD-IIQFIY 868

 Score = 101 (40.6 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query:    17 IRFGLATQKEICTASIS--------DCSISHASQ--LANPFLG-LPLEFGKCESCGTSEP 65
             ++FGL + +E+   S++        D +     +  L +P LG +   F +C++CG  + 
Sbjct:    18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNF-RCQTCG-EDM 75

Query:    66 GKCEGHFGYIELPIPIYHPSHISELK 91
              +C GHFG+IEL  P++H   I+++K
Sbjct:    76 AECPGHFGHIELAKPVFHIGFIAKIK 101

 Score = 50 (22.7 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             S+   GE VGV+AA ++  PA +  L++
Sbjct:  1057 SIVHPGEMVGVVAAQSIGEPATQMTLNT 1084


>SGD|S000005642 [details] [associations]
            symbol:RPO31 "RNA polymerase III largest subunit C160"
            species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
            EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
            EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
            GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
            eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
            PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
            RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
            DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
            PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
            KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
            Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
        Length = 1460

 Score = 310 (114.2 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
 Identities = 102/369 (27%), Positives = 170/369 (46%)

Query:   143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
             YI  YLP PP C+  P +   D  ++   DL++  L +++    +I++      +  +  
Sbjct:   256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLDKGISINNMM 313

Query:   201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
                + LQL V  Y+       +     +  G    P       L+  +  F    SG   
Sbjct:   314 EHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRV 373

Query:   258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCL 309
              FS R+VI+ D    ++E+ VP  +A+ +T+ E+V  +N + LQEL+ N          L
Sbjct:   374 DFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYL 433

Query:   310 TYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
                +  +  +LR G +      L+ G VV R + DGD V  NR P+ H+ S+ +    + 
Sbjct:   434 LKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIR 493

Query:   368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
                T ++N  +C P +ADFDGD ++L  PQ+  A+AE + L  V+  LL+  +G   +  
Sbjct:   494 PWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAA 553

Query:   428 ATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCSARWTALQILQ 481
               D +  S  +  K  F D+A  TQ L+M +       +P PA+ K      WT  Q+  
Sbjct:   554 TQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYL--WTGKQVFS 611

Query:   482 SVLPPGFDS 490
              ++ P  +S
Sbjct:   612 LLIKPNHNS 620

 Score = 139 (54.0 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
 Identities = 46/162 (28%), Positives = 76/162 (46%)

Query:   665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
             +P +   P +K G ++  FF GL P E + H+IS RE +V ++   +E G + + LM  L
Sbjct:   835 FPKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 893

Query:   725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
              D+   YD TVR   +N I+QF Y  +      +    +PV    +    + AY    ++
Sbjct:   894 EDLSCQYDNTVRT-SANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSW---DHAYNITFNN 949

Query:   785 SPSSNNSWELMK---EILLCRVSFNNDPIDRRVILYLNDCGC 823
                    + +M+   EIL         P++ R++ Y N  GC
Sbjct:   950 QDKGLLPYAIMETANEIL--------GPLEERLVRYDNS-GC 982

 Score = 85 (35.0 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
 Identities = 35/158 (22%), Positives = 63/158 (39%)

Query:    23 TQKEICTASISDCSISHASQL---ANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPI 79
             ++ E+ T  + D     A +     +P +G+     +C +C       C GHFG+++L +
Sbjct:    30 SEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH-GNLASCHGHFGHLKLAL 88

Query:    80 PIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
             P++H   I   K T+   Q   KN      +L S  + ++ L  +       L   G   
Sbjct:    89 PVFH---IGYFKATIQILQGICKN---CSAILLSETDKRQFLHELRRPGVDNLRRMGILK 142

Query:   140 QDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
             +   IL+       CL    ++  V   ++    A LK
Sbjct:   143 K---ILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALK 177

 Score = 69 (29.3 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
 Identities = 21/99 (21%), Positives = 48/99 (48%)

Query:   496 LIKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
             +I+ S++L G  D+  +     + +  +I  + GP+E     + +  L    L   GFS+
Sbjct:   653 IIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSI 712

Query:   555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL 593
              + D + +     +++++ + L  + YH+    +EL+ L
Sbjct:   713 GINDVTPAD----DLKQKKEELVEIAYHKC---DELITL 744

 Score = 57 (25.1 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
 Identities = 51/224 (22%), Positives = 96/224 (42%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRG---LSEPGTLFKNLMAV-----LRDVVICYDGT 734
             F+H L  Y    +  +T    +R SRG   L EP    K L  +     + D V      
Sbjct:  1004 FYHSLREY---INGKATALANLRKSRGMLGLLEPPA--KELQGIDPDETVPDNVKTSVSQ 1058

Query:   735 VRNVCSNSIIQF-DYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS-----PSS 788
             +  +   S+ +F + A+   +   L P G  +G + A ++  P  +  L +       S 
Sbjct:  1059 LYRISEKSVRKFLEIALFKYRKARLEP-GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1117

Query:   789 NNSWEL--MKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLK 846
             N +  +  +KEI+      +  PI   V++  ND         ERAA +VK ++++  L 
Sbjct:  1118 NVTLGVPRIKEIINASKVIST-PIINAVLVNDND---------ERAARVVKGRVEKTLLS 1167

Query:   847 DAAVEFLIEYKKPEI----ISDDEGLVGHIHLNKILLEDLRISM 886
             D A  ++ +  K  +    +  D G +  + L ++ +ED+ +++
Sbjct:  1168 DVAF-YVQDVYKDNLSFIQVRIDLGTIDKLQL-ELTIEDIAVAI 1209

 Score = 42 (19.8 bits), Expect = 9.4e-28, Sum P(4) = 9.4e-28
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query:   651 KTLVEDIASHFERIYPMDLNY 671
             KTL+ D+A + + +Y  +L++
Sbjct:  1163 KTLLSDVAFYVQDVYKDNLSF 1183


>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase 3
            largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 239 (89.2 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 69/208 (33%), Positives = 104/208 (50%)

Query:   291 VNVHNIN---YLQ-ELVDNKLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGD 344
             VN HN N   Y   +  DN+     S   +  SL+  +K H    L  G VV R I DGD
Sbjct:   512 VNNHNNNNNIYCNNQTQDNEEERKNSQ-FNKISLKYANKNHVIQNLNIGDVVERHICDGD 570

Query:   345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
              V  NR P+ H+ S+      + D  T + N  +C P +ADFDGD ++L  PQ+  A+AE
Sbjct:   571 IVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAE 630

Query:   405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK-AFTQQLAMFALSPL-- 460
              L L +V+  L++  NG + + L  D L +  ++  K  FLD+  F    + F+ + L  
Sbjct:   631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDASLYI 690

Query:   461 --PRPALSKARCSARWTALQILQSVLPP 486
               P PA+ K +    WT  Q++  ++ P
Sbjct:   691 ELPIPAILKPK--ELWTGKQLISVLIKP 716

 Score = 123 (48.4 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G ++  F+ GL P E   H++S RE +V ++   +E G + + LM  L D+ I YD +VR
Sbjct:   943 GFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVR 1002

Query:   737 NVCSNSIIQFDYAVNA 752
             + C   I+QF Y  +A
Sbjct:  1003 S-CDKQIVQFIYGDDA 1017

 Score = 120 (47.3 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 50/188 (26%), Positives = 88/188 (46%)

Query:   144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
             I+  L VPPN +    I D   T   DL+  +L ++ +    I +    T  +++ +   
Sbjct:   247 IITALLVPPNTIRPSVIIDEHGTAEDDLT-CILSEITQLNNTIYNQC--TNGYQTNQFLG 303

Query:   204 ND--LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK---MRTLFIRKGSGF 258
             N   LQL + +++     A S   + A   +S+      +    K    R     K   F
Sbjct:   304 NVEFLQLQITRFINSDSPAVSQ--LLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDF 361

Query:   259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSY 318
             SSR+VI+ D    ++E+ +P  IA R+T+ E VN +NI+ L+ L+ N  C  +    ++Y
Sbjct:   362 SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNG-CNKWP--GANY 418

Query:   319 SLREGSKG 326
              +++  KG
Sbjct:   419 IIKKSKKG 426

 Score = 95 (38.5 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 30/117 (25%), Positives = 56/117 (47%)

Query:    13 QIVGIRFGLATQKEICTAS---ISDCSI-SHASQLANPFLGLPLEFGK------CESCGT 62
             +I  IRFG+ ++++I   S   I +  +  + S +  P+  L L+ G       CE+C  
Sbjct:    34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCN- 92

Query:    63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
              +   C GHFGYIEL  P++H  +   +   +Y       +  +++  +   C +K+
Sbjct:    93 KKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKK 149

 Score = 91 (37.1 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 26/91 (28%), Positives = 47/91 (51%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             H++LLA+ M   GD++G N  G +   +S  +   F E    +    F K  ++   +N+
Sbjct:  2253 HIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDE--INNI 2310

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
             S  +     GK++ +GTG+ F LL+  + E+
Sbjct:  2311 SESIIV---GKNIPIGTGA-FQLLYDYKFEK 2337

 Score = 42 (19.8 bits), Expect = 2.3e-29, Sum P(6) = 2.3e-29
 Identities = 16/72 (22%), Positives = 27/72 (37%)

Query:   746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSF 805
             F Y ++   SH        +  L +   SN      +D    S    E  K++LL     
Sbjct:   775 FYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK---- 830

Query:   806 NNDPIDRRVILY 817
               + ++  +ILY
Sbjct:   831 GYEKVNNEIILY 842

 Score = 40 (19.1 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 10/46 (21%), Positives = 25/46 (54%)

Query:   833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEI---ISDDEGLVGHIHLN 875
             A M+K++L++ +++D  +    +Y    +   +  +E L+  + LN
Sbjct:  1859 ALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLN 1904

 Score = 40 (19.1 bits), Expect = 3.0e-09, Sum P(6) = 3.0e-09
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query:   671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
             +P A Y +IK     G+DPY +++ S +     + SS G S
Sbjct:   413 WPGANY-IIKKSK-KGIDPYSDISTSYNNNSNNI-SSIGCS 450

 Score = 40 (19.1 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query:    74 YIELPIP-IYHPSHI 87
             YIELPIP I  P  +
Sbjct:   689 YIELPIPAILKPKEL 703

 Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(5) = 3.4e-09
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query:   783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
             D + + NN ++   E  LC V+ +N+          N+  C  +  Q+       +Q  +
Sbjct:   492 DINNNINNIYKNTSETNLCNVNNHNNN---------NNIYCNNQ-TQDNEEERKNSQFNK 541

Query:   843 VSLKDAAVEFLIE 855
             +SLK A    +I+
Sbjct:   542 ISLKYANKNHVIQ 554


>UNIPROTKB|Q8IE49 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
            RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 239 (89.2 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 69/208 (33%), Positives = 104/208 (50%)

Query:   291 VNVHNIN---YLQ-ELVDNKLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGD 344
             VN HN N   Y   +  DN+     S   +  SL+  +K H    L  G VV R I DGD
Sbjct:   512 VNNHNNNNNIYCNNQTQDNEEERKNSQ-FNKISLKYANKNHVIQNLNIGDVVERHICDGD 570

Query:   345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
              V  NR P+ H+ S+      + D  T + N  +C P +ADFDGD ++L  PQ+  A+AE
Sbjct:   571 IVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAE 630

Query:   405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK-AFTQQLAMFALSPL-- 460
              L L +V+  L++  NG + + L  D L +  ++  K  FLD+  F    + F+ + L  
Sbjct:   631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDASLYI 690

Query:   461 --PRPALSKARCSARWTALQILQSVLPP 486
               P PA+ K +    WT  Q++  ++ P
Sbjct:   691 ELPIPAILKPK--ELWTGKQLISVLIKP 716

 Score = 123 (48.4 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G ++  F+ GL P E   H++S RE +V ++   +E G + + LM  L D+ I YD +VR
Sbjct:   943 GFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVR 1002

Query:   737 NVCSNSIIQFDYAVNA 752
             + C   I+QF Y  +A
Sbjct:  1003 S-CDKQIVQFIYGDDA 1017

 Score = 120 (47.3 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 50/188 (26%), Positives = 88/188 (46%)

Query:   144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
             I+  L VPPN +    I D   T   DL+  +L ++ +    I +    T  +++ +   
Sbjct:   247 IITALLVPPNTIRPSVIIDEHGTAEDDLT-CILSEITQLNNTIYNQC--TNGYQTNQFLG 303

Query:   204 ND--LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK---MRTLFIRKGSGF 258
             N   LQL + +++     A S   + A   +S+      +    K    R     K   F
Sbjct:   304 NVEFLQLQITRFINSDSPAVSQ--LLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDF 361

Query:   259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSY 318
             SSR+VI+ D    ++E+ +P  IA R+T+ E VN +NI+ L+ L+ N  C  +    ++Y
Sbjct:   362 SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNG-CNKWP--GANY 418

Query:   319 SLREGSKG 326
              +++  KG
Sbjct:   419 IIKKSKKG 426

 Score = 95 (38.5 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 30/117 (25%), Positives = 56/117 (47%)

Query:    13 QIVGIRFGLATQKEICTAS---ISDCSI-SHASQLANPFLGLPLEFGK------CESCGT 62
             +I  IRFG+ ++++I   S   I +  +  + S +  P+  L L+ G       CE+C  
Sbjct:    34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCN- 92

Query:    63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
              +   C GHFGYIEL  P++H  +   +   +Y       +  +++  +   C +K+
Sbjct:    93 KKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKK 149

 Score = 91 (37.1 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 26/91 (28%), Positives = 47/91 (51%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             H++LLA+ M   GD++G N  G +   +S  +   F E    +    F K  ++   +N+
Sbjct:  2253 HIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDE--INNI 2310

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
             S  +     GK++ +GTG+ F LL+  + E+
Sbjct:  2311 SESIIV---GKNIPIGTGA-FQLLYDYKFEK 2337

 Score = 42 (19.8 bits), Expect = 2.3e-29, Sum P(6) = 2.3e-29
 Identities = 16/72 (22%), Positives = 27/72 (37%)

Query:   746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSF 805
             F Y ++   SH        +  L +   SN      +D    S    E  K++LL     
Sbjct:   775 FYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK---- 830

Query:   806 NNDPIDRRVILY 817
               + ++  +ILY
Sbjct:   831 GYEKVNNEIILY 842

 Score = 40 (19.1 bits), Expect = 1.6e-37, Sum P(6) = 1.6e-37
 Identities = 10/46 (21%), Positives = 25/46 (54%)

Query:   833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEI---ISDDEGLVGHIHLN 875
             A M+K++L++ +++D  +    +Y    +   +  +E L+  + LN
Sbjct:  1859 ALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLN 1904

 Score = 40 (19.1 bits), Expect = 3.0e-09, Sum P(6) = 3.0e-09
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query:   671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
             +P A Y +IK     G+DPY +++ S +     + SS G S
Sbjct:   413 WPGANY-IIKKSK-KGIDPYSDISTSYNNNSNNI-SSIGCS 450

 Score = 40 (19.1 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query:    74 YIELPIP-IYHPSHI 87
             YIELPIP I  P  +
Sbjct:   689 YIELPIPAILKPKEL 703

 Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(5) = 3.4e-09
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query:   783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
             D + + NN ++   E  LC V+ +N+          N+  C  +  Q+       +Q  +
Sbjct:   492 DINNNINNIYKNTSETNLCNVNNHNNN---------NNIYCNNQ-TQDNEEERKNSQFNK 541

Query:   843 VSLKDAAVEFLIE 855
             +SLK A    +I+
Sbjct:   542 ISLKYANKNHVIQ 554


>UNIPROTKB|I3LJR4 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GeneTree:ENSGT00700000104490 EMBL:FP565284
            Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
        Length = 1010

 Score = 352 (129.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
 Identities = 133/455 (29%), Positives = 204/455 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++     L MF  + 
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570

Query:   459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
                +P+PA+ K R    WT  QI  S++ PG  +C
Sbjct:   571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602

 Score = 103 (41.3 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query:   670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             +Y     G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
              YD TVRN   N ++Q  Y  +     S+
Sbjct:   874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901

 Score = 89 (36.4 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96


>CGD|CAL0002215 [details] [associations]
            symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
            GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
            ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
            KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
        Length = 1448

 Score = 299 (110.3 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
 Identities = 105/374 (28%), Positives = 178/374 (47%)

Query:   135 KGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP 194
             KG  P+  YI  YLP PP C+    + D  S    DL++  L +++    +IR+      
Sbjct:   248 KGGRPEM-YIWRYLPAPPVCIRPSVMMDSQSN-EDDLTVK-LTEIVWTSSMIRAGIVKGI 304

Query:   195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR- 253
             +  +   + + LQL+V  Y+     + S+    +  G     +   +A+ ++++    R 
Sbjct:   305 SINNLMEQWDYLQLSVAMYIN----SDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRF 360

Query:   254 KG--SG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL 307
             +G  SG    FS R+VI+ D   +++E+ VP  +A+ +T+ E+   +N   LQ+LV N  
Sbjct:   361 RGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGP 420

Query:   308 CL----TY---SDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
              +     Y    +     +LR G   K    L+ G VV R I DGD V  NR P+ H+ S
Sbjct:   421 DIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480

Query:   359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
             + +    +    T ++N  +C P +ADFDGD ++L  PQ+  A+AE + L  V+  LL+ 
Sbjct:   481 ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540

Query:   419 HNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSA 472
              +G   +    D +  S  +  K  F D+A   Q L+M + + +    P P + K     
Sbjct:   541 KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKP--VM 598

Query:   473 RWTALQILQSVLPP 486
              WT  Q+   ++ P
Sbjct:   599 LWTGKQVFSLLIKP 612

 Score = 144 (55.7 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
 Identities = 56/200 (28%), Positives = 94/200 (47%)

Query:   672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
             P +K G ++  FF GL P E + H+IS RE +V ++   +E G + + LM  L D+   Y
Sbjct:   837 PQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895

Query:   732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMS-NPAYKAVLDSSPSSNN 790
             D TVRN  SN I+QF Y  +    + +    +PV        + N  Y  V D+S     
Sbjct:   896 DNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPVNFNRQWDHAYNLTYN-VDDASLLPYQ 953

Query:   791 SWELMKEILLCRVSFNNDPIDRRVILYLN-DCGCGRKYCQERAAYMVKNQLKRVSLKDAA 849
               EL+  +L         P++ ++I Y N       K  +++  Y+ +N  +R   K   
Sbjct:   954 IEELVDSVLA--------PLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIR 1005

Query:   850 VEFLIEYK-KPEIISDDEGL 868
              +FL +   +  ++ ++ GL
Sbjct:  1006 -DFLTKKSIRLALLREERGL 1024

 Score = 78 (32.5 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query:    48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
             +G+     +C +C       C GHFG+I L +P++H  +   +
Sbjct:    58 MGISSNAQECSTCH-GNLASCHGHFGHIRLALPVFHVGYFKSI 99

 Score = 62 (26.9 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             H+ LL + MT  G+++G    G   +  S+     F + T  +    F+ A   ++ D +
Sbjct:  1344 HIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL----FDAAFFMKN-DKI 1398

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
               V      G+ +++GTGS F L+  +  E+
Sbjct:  1399 EGVSECIILGQTMSIGTGS-FKLVKSSNCEK 1428

 Score = 61 (26.5 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query:   496 LIKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
             +I+ S++L G  D+ T+     + +  +I  + GP+E     + +  L    L   GFS+
Sbjct:   648 VIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSI 707

Query:   555 SLED 558
              + D
Sbjct:   708 GIND 711

 Score = 57 (25.1 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query:   645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
             +G+   KTL+ED+A + E +Y  +L Y + K  L
Sbjct:  1150 KGRI-EKTLLEDVAFYIEDVYKDNLAYLSIKIDL 1182

 Score = 44 (20.5 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
 Identities = 18/69 (26%), Positives = 32/69 (46%)

Query:   489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ-PLLMENL 547
             D   D Y   K E   G  +  T+ + I  +++ +  E G   + E  DSL  PL+M   
Sbjct:   734 DQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIREL-DSLNAPLIMATC 792

Query:   548 FADGFSVSL 556
              + G ++++
Sbjct:   793 GSKGSTLNV 801

 Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query:   509 RDTIPSVI-NEIVTSIFFEKGPEEVLEFF-----DSLQPLLMENLFADGFSVSLEDFSLS 562
             ++T+   I +E +  +F  + PE  LE F     D L PL   NLF        E F L 
Sbjct:   189 KETLEKTIWDEELDQVFI-RNPE--LEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLD 245

Query:   563 KA 564
              A
Sbjct:   246 PA 247

 Score = 37 (18.1 bits), Expect = 2.1e-26, Sum P(5) = 2.1e-26
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query:   830 ERAAYMVKNQLKRVSLKDAAVEFLIE--YK 857
             E AA + K ++++  L+D A  F IE  YK
Sbjct:  1143 EIAARVAKGRIEKTLLEDVA--FYIEDVYK 1170


>UNIPROTKB|Q5ZL98 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
            CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
            PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
            RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
            STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
            InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
        Length = 1390

 Score = 339 (124.4 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
 Identities = 129/414 (31%), Positives = 187/414 (45%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN++++LV N          +          L+ G++   
Sbjct:   381 AVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDSC 491
             +A   Q+    L          LP PA+ K      WT  Q+  S+L P  D C
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSSILKPS-DDC 611

 Score = 122 (48.0 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
 Identities = 45/152 (29%), Positives = 69/152 (45%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            Y 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYP 933

Query:   780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
                + + S N     S  +MK  E L CR SF
Sbjct:   934 CRSEPALSKNELVLTSESIMKKNEFLCCRDSF 965

 Score = 84 (34.6 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FKAVI---GILQMICKTCCR 114

Query:   117 V 117
             +
Sbjct:   115 I 115

 Score = 43 (20.2 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
 Identities = 38/171 (22%), Positives = 73/171 (42%)

Query:   663 RIYPMDLNYPTAKYGLIKGCFFH-GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
             R+  +++N  T +Y +   C     + P +   H  +   V  R +   S    + ++L 
Sbjct:  1138 RLLRLEVNAETVRYSI---CISKLRVKPGDVAVHGEAVVCVTPREN-SKSSMYYVLQSLK 1193

Query:   722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
               L  VV+   G +  V S ++I  D   + ++ + L   G+ +  + AT         V
Sbjct:  1194 EELPKVVV--QG-IPEV-SRAVIHIDEQ-SGKEKYKLLVEGDNLRAVMAT-------HGV 1241

Query:   782 LDSSPSSNNSWELMKEILL--CRVSFNND----------PIDRRVILYLND 820
               +  SSNN++E+ K + +   R +  N+           IDRR ++ L+D
Sbjct:  1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSD 1292


>UNIPROTKB|F1NIK7 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
            regulation of interferon-beta production" evidence=IEA] [GO:0045087
            "innate immune response" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
            EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
        Length = 1390

 Score = 333 (122.3 bits), Expect = 3.2e-36, Sum P(3) = 3.2e-36
 Identities = 128/414 (30%), Positives = 186/414 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN++++LV N          +          L+ G++   
Sbjct:   381 AVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDSC 491
             +A   Q+    L          LP PA+ K      WT  Q+   +L P  D C
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSLILKPS-DDC 611

 Score = 122 (48.0 bits), Expect = 3.2e-36, Sum P(3) = 3.2e-36
 Identities = 45/152 (29%), Positives = 69/152 (45%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            Y 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYP 933

Query:   780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
                + + S N     S  +MK  E L CR SF
Sbjct:   934 CRSEPALSKNELVLTSESIMKKNEFLCCRDSF 965

 Score = 84 (34.6 bits), Expect = 3.2e-36, Sum P(3) = 3.2e-36
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FKAVI---GILQMICKTCCR 114

Query:   117 V 117
             +
Sbjct:   115 I 115

 Score = 43 (20.2 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
 Identities = 38/171 (22%), Positives = 73/171 (42%)

Query:   663 RIYPMDLNYPTAKYGLIKGCFFH-GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
             R+  +++N  T +Y +   C     + P +   H  +   V  R +   S    + ++L 
Sbjct:  1138 RLLRLEVNAETVRYSI---CISKLRVKPGDVAVHGEAVVCVTPREN-SKSSMYYVLQSLK 1193

Query:   722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
               L  VV+   G +  V S ++I  D   + ++ + L   G+ +  + AT         V
Sbjct:  1194 EELPKVVV--QG-IPEV-SRAVIHIDEQ-SGKEKYKLLVEGDNLRAVMAT-------HGV 1241

Query:   782 LDSSPSSNNSWELMKEILL--CRVSFNND----------PIDRRVILYLND 820
               +  SSNN++E+ K + +   R +  N+           IDRR ++ L+D
Sbjct:  1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSD 1292


>DICTYBASE|DDB_G0277199 [details] [associations]
            symbol:rpc1 "RNA polymerase III, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
            from RNA polymerase III promoter" evidence=ISS] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
            STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
            KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
        Length = 1450

 Score = 309 (113.8 bits), Expect = 4.5e-36, Sum P(4) = 4.5e-36
 Identities = 114/367 (31%), Positives = 171/367 (46%)

Query:   144 ILEYLPVPPNCL--SVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
             IL Y+ VPP  +  SVP +  G  T   DL++  L ++L   E IRS+          E 
Sbjct:   245 ILTYMLVPPVSIRPSVP-MDGGSGTNEDDLTMK-LSEILHINEHIRSNVDRAEMSAIME- 301

Query:   202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
             + + LQ +   Y+  +V G     +   A  G+SQ     T     + R     K   FS
Sbjct:   302 DWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTG----RFRGNLSGKRVDFS 357

Query:   260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYS 312
              R+VI+ D    ++E+ VP  IA  +T+ ERV  +NI  LQ+ V N          + Y+
Sbjct:   358 GRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYA 417

Query:   313 DGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
             DG   + L+ G+  K    L+ G +V R I+DGD +  NR P+ HK S+ +    V    
Sbjct:   418 DGVKKW-LKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWR 476

Query:   371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
             T++ N  +C P +ADFDGD +++  PQ+  A+AE   L  V   L++  NG   L  AT 
Sbjct:   477 TLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGE-PLVAATQ 535

Query:   431 ALLSLKVMFKKY--FLDK-AFTQQLAMFALS----PLPRPALSKARCSARWTALQILQSV 483
               L+   +  +   F ++  F      FA +     LP PA+ K      WT  QI + +
Sbjct:   536 DFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKP--VELWTGKQIFEVL 593

Query:   484 LPPGFDS 490
             L P   S
Sbjct:   594 LRPSVKS 600

 Score = 121 (47.7 bits), Expect = 4.5e-36, Sum P(4) = 4.5e-36
 Identities = 51/196 (26%), Positives = 83/196 (42%)

Query:   672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
             P +K G +   F+ G+ P E   H++  RE +V ++   +E G + + LM  L D+   Y
Sbjct:   816 PKSK-GFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHY 874

Query:   732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNS 791
             D TVR+     I+QF Y  +      +     PV  L A  MS  + +   +  P     
Sbjct:   875 DYTVRDSIGG-IVQFIYGDDGLDPAGMEAKDRPVDFLRAM-MSVKSTRQCRNE-PEMK-P 930

Query:   792 WELMK--EILLCRVSFN--NDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 847
             +E+ K  E ++    F    D     + ++ N     + Y QE  +   + +L    L D
Sbjct:   931 FEIRKLVESIIDSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSFDLND 990

Query:   848 AAVEFLIEYKKPEIIS 863
                E +IE   P  IS
Sbjct:   991 NEDEIIIEDNSPMDIS 1006

 Score = 89 (36.4 bits), Expect = 4.5e-36, Sum P(4) = 4.5e-36
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query:    48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKN 103
             LG   +   C +CG S    C GHFGYI+L +P++H   I  LK  M   Q+  K+
Sbjct:    58 LGTSDKQAMCTTCGLSIVD-CVGHFGYIKLQLPVFH---IGYLKNIMNILQMICKS 109

 Score = 68 (29.0 bits), Expect = 4.5e-36, Sum P(4) = 4.5e-36
 Identities = 23/84 (27%), Positives = 40/84 (47%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             H++LLA+ M+  G+++G    G   +  S+ +   F + T  +    F+ A   R  D++
Sbjct:  1356 HVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHL----FDAAVHHRQ-DDI 1410

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLL 1080
               V      G  + +GTG  F LL
Sbjct:  1411 VGVSECIIMGVVIPLGTGL-FKLL 1433

 Score = 40 (19.1 bits), Expect = 5.0e-08, Sum P(4) = 5.0e-08
 Identities = 29/112 (25%), Positives = 45/112 (40%)

Query:   181 KQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSS------RDVDARFGVSQ 234
             K+ EII ++      F  ++ ES  LQL+ G  +E    AK +      RD   +  V+ 
Sbjct:   700 KKREIIETAYKKCAVF-LKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVND 758

Query:   235 DPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
              PN  +      +  L   KGS  +   +I     + VN   +P     R T
Sbjct:   759 LPNYNSPL----IMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTT 806


>ZFIN|ZDB-GENE-050208-103 [details] [associations]
            symbol:polr3a "polymerase (RNA) III (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
            PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
            EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
            EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
            RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
            GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
            Uniprot:E7F5P2
        Length = 1390

 Score = 305 (112.4 bits), Expect = 1.0e-35, Sum P(5) = 1.0e-35
 Identities = 122/430 (28%), Positives = 190/430 (44%)

Query:    94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
             + +F + I+++   + LL+   E      V  + +RIP++    L     +GK   P D 
Sbjct:   194 LQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPESGK---PAD- 249

Query:   143 YILEYLPVPPNCLSVPDISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
              IL  L VPP C+    +SD  S T   DL++  L +++   ++I+  R      +    
Sbjct:   250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRMTGAKTQMIME 308

Query:   202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
             + + LQL    Y+  E+ G   +        G  Q      K    + R     K   FS
Sbjct:   309 DWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFS 364

Query:   260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYS 312
              R+VI+ D   R++E+ VP  +A+ +T+ E+VN  NI  +++LV N          +   
Sbjct:   365 GRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQR 424

Query:   313 DGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
                    L+ G++      L+ G VV R ++DGD V  NR P+ HK S+ A    V    
Sbjct:   425 HMQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHR 484

Query:   371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
             T + N  +C P +ADFDGD ++L  PQ+  AKAE L L   +  L++  NG   +    D
Sbjct:   485 TFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQD 544

Query:   431 ALLSLKVM-FKKYFLDKAFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQ 481
              L    ++  K  F D+    Q+    L          LP PA+ K      WT  QI  
Sbjct:   545 FLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKP--IRLWTGKQIFS 602

Query:   482 SVLPPGFDSC 491
              +L P   SC
Sbjct:   603 LILKPS-KSC 611

 Score = 110 (43.8 bits), Expect = 1.0e-35, Sum P(5) = 1.0e-35
 Identities = 39/140 (27%), Positives = 64/140 (45%)

Query:   672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
             P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + L+  L D+   Y
Sbjct:   828 PAAK-GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQY 886

Query:   732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNN- 790
             D TVR+  +  IIQF Y  +     ++    EP+            Y    + + S N  
Sbjct:   887 DLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCTGEPALSRNEL 945

Query:   791 ---SWELMK--EILLCRVSF 805
                S  +MK  + L C+ +F
Sbjct:   946 LLTSDSIMKRKDFLCCKDTF 965

 Score = 79 (32.9 bits), Expect = 1.0e-35, Sum P(5) = 1.0e-35
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYH 83
             CE+CG +    C GH+GY++L +P +H
Sbjct:    69 CETCGKNL-ADCLGHYGYLDLELPCFH 94

 Score = 67 (28.6 bits), Expect = 1.0e-35, Sum P(5) = 1.0e-35
 Identities = 27/102 (26%), Positives = 48/102 (47%)

Query:   987 TMVAKGVL--KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
             TMV  G+   + H++LLA+ M+  G+++G    G   +  S+ +   F +    +    F
Sbjct:  1274 TMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHL----F 1329

Query:  1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENE 1086
             + AA     D++  V      G  + +GTG  F LL ++  E
Sbjct:  1330 D-AAYFGQKDSVCGVSECIIMGIPMNIGTGL-FKLLHRSNRE 1369

 Score = 66 (28.3 bits), Expect = 1.0e-35, Sum P(5) = 1.0e-35
 Identities = 26/94 (27%), Positives = 42/94 (44%)

Query:   487 GFDSCG-DRYL-IKKSEVLKGDFDRDTIPSVI-NEIVTSIFFEKGPEEVLEFFDSLQPLL 543
             G D C  D ++ I  SE++ G  D+ T+ S   N I   +  + G +E  +    L  L 
Sbjct:   628 GEDLCANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLA 687

Query:   544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
                L   GFS+ + D +  +  L   Q+ + A Y
Sbjct:   688 PVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGY 721

 Score = 40 (19.1 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
 Identities = 27/137 (19%), Positives = 59/137 (43%)

Query:   663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
             R+  +++N  T +Y +        + P +   H     E +V  S   +   +++  L +
Sbjct:  1138 RLLRLEVNAETVRYSICTSKL--RVKPGDVQVHG----EAVVCVSPRENSKSSMYYVLQS 1191

Query:   723 VLRDVV-ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
             + +D+  +   G +  V S ++I  D   + ++   L   G+ +  + AT         V
Sbjct:  1192 LKQDLPKVVVQG-IPEV-SRAVIHIDEQ-SGKQKFKLLVEGDNMRSVMAT-------HGV 1241

Query:   782 LDSSPSSNNSWELMKEI 798
               S  +SNN++E+ K +
Sbjct:  1242 NGSKTTSNNTYEVEKTL 1258

 Score = 38 (18.4 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query:   645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
             +G+   KTL+ +I+ + E ++  D  +   K  L
Sbjct:  1102 KGRI-EKTLLGEISEYIEEVFLPDDTFILVKLSL 1134


>UNIPROTKB|J9P629 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
            Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
            Uniprot:J9P629
        Length = 1390

 Score = 330 (121.2 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
 Identities = 128/413 (30%), Positives = 185/413 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN+L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             +A   Q+    L          LP P + K      WT  QI   +L P  D+
Sbjct:   561 RAKACQIIASILVGKDEKIKVHLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611

 Score = 115 (45.5 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+       + N   K
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEF--KRVLDN--IK 929

Query:   780 AVL--DSSPS-SNNSWELMKEILLCRVSF 805
             AV    S P+ S N   L  E ++ +  F
Sbjct:   930 AVFPCQSEPALSKNELVLTTESIMKKTEF 958

 Score = 84 (34.6 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>UNIPROTKB|O14802 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0006385 "transcription elongation from RNA polymerase III
            promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
            III transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
            InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
            GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
            GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
            OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
            EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
            RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
            SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
            PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
            KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
            HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
            neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
            PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
            ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
            Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
            GermOnline:ENSG00000148606 Uniprot:O14802
        Length = 1390

 Score = 332 (121.9 bits), Expect = 4.5e-35, Sum P(3) = 4.5e-35
 Identities = 128/413 (30%), Positives = 185/413 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN+L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             +A   Q+    L          LP P + K      WT  QI   +L P  D+
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611

 Score = 112 (44.5 bits), Expect = 4.5e-35, Sum P(3) = 4.5e-35
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            + 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933

Query:   780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
                + + S N     +  +MK  E L C+ SF
Sbjct:   934 CPSEPALSKNELILTTESIMKKSEFLCCQDSF 965

 Score = 84 (34.6 bits), Expect = 4.5e-35, Sum P(3) = 4.5e-35
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>UNIPROTKB|E9PTB6 [details] [associations]
            symbol:Polr3a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=IEA]
            [GO:0045087 "innate immune response" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
            GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
            Uniprot:E9PTB6
        Length = 1342

 Score = 328 (120.5 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
 Identities = 128/413 (30%), Positives = 185/413 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN+L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             +A   Q+    L          LP P + K      WT  QI   +L P  D+
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611

 Score = 115 (45.5 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
 Identities = 43/152 (28%), Positives = 69/152 (45%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            Y 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYP 933

Query:   780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
                + + S N     +  +MK  E L C+ SF
Sbjct:   934 CQSERALSKNELTLTTEAIMKKNEFLCCQDSF 965

 Score = 84 (34.6 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>UNIPROTKB|A4IF62 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
            response" evidence=ISS] [GO:0032728 "positive regulation of
            interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
            GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
            IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
            ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
            Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
            HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
            OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
            PANTHER:PTHR19376:SF15 Uniprot:A4IF62
        Length = 1390

 Score = 330 (121.2 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
 Identities = 128/413 (30%), Positives = 185/413 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GKAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN+L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             +A   Q+    L          LP P + K      WT  QI   +L P  D+
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611

 Score = 112 (44.5 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
 Identities = 44/152 (28%), Positives = 70/152 (46%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            + 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933

Query:   780 AVLDSSPSSNN---SWE-LMK--EILLCRVSF 805
                + + S N    S E +MK  E L C+ SF
Sbjct:   934 CRSEPALSKNELLLSAESIMKKNEFLCCQDSF 965

 Score = 84 (34.6 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>UNIPROTKB|F1S2E6 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
            GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
        Length = 1390

 Score = 328 (120.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
 Identities = 126/413 (30%), Positives = 185/413 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NI +L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L    ++  K  F D
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560

Query:   446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             +A   Q+    L          LP P + K      WT  Q+   +L P +D+
Sbjct:   561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQVFSVILRPSYDN 611

 Score = 112 (44.5 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+            + 
Sbjct:   875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933

Query:   780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
                + + S N     +  +MK  E L C+ SF
Sbjct:   934 CQSEPALSKNELLLTTESIMKKNEFLCCQDSF 965

 Score = 84 (34.6 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>UNIPROTKB|E2QXD8 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
        Length = 1376

 Score = 323 (118.8 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
 Identities = 128/416 (30%), Positives = 185/416 (44%)

Query:   105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
             G AQ  L+    V  + KRIP E    L     AGK   P D  IL  L VPP C+    
Sbjct:   212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266

Query:   160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
             +SD  S T   DL++  L +++   ++I+  R SG       E + + LQL    Y+  E
Sbjct:   267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324

Query:   216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
             + G   +        G  Q      K    + R     K   FS R+VI+ D   R++E+
Sbjct:   325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380

Query:   276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
              VP  +A+ +TF E+VN  NIN+L++LV N          +          L+ G++   
Sbjct:   381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440

Query:   329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
                L+ G +V R ++DGD V  NR P+ HK S+ A    V    T + N  +C P +ADF
Sbjct:   441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500

Query:   387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLK----VMFKKY 442
             DGD ++L  PQ+  AKAE L L   +  L++  NG   +    D L +      +  K  
Sbjct:   501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDT 560

Query:   443 FLDKAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
             F D+A   Q+    L          LP P + K      WT  QI   +L P  D+
Sbjct:   561 FFDRAKACQIIASILVGKDEKIKVHLPPPTILKP--VTLWTGKQIFSVILRPSDDN 614

 Score = 115 (45.5 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
             HFE+   +    P AK G +   F+ GL P E   H+++ RE +V ++   +E G + + 
Sbjct:   823 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 877

Query:   720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
             L+  L D+   YD TVR+  +  IIQF Y  +     ++    EP+       + N   K
Sbjct:   878 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEF--KRVLDN--IK 932

Query:   780 AVL--DSSPS-SNNSWELMKEILLCRVSF 805
             AV    S P+ S N   L  E ++ +  F
Sbjct:   933 AVFPCQSEPALSKNELVLTTESIMKKTEF 961

 Score = 84 (34.6 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
             CE+CG +    C GH+GYI+L +P +H  +          F+  I   G+ Q +  +CC 
Sbjct:    69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114

Query:   117 V 117
             +
Sbjct:   115 I 115


>WB|WBGene00000123 [details] [associations]
            symbol:ama-1 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0007052 "mitotic spindle organization"
            evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
            [GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
            "developmental process" evidence=IMP] [GO:0006479 "protein
            methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
            activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
            polymerase II promoter" evidence=IMP] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
            GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
            GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
            EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
            STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
            EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
            UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
            OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
        Length = 1856

 Score = 331 (121.6 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 112/424 (26%), Positives = 204/424 (48%)

Query:    82 YHPSHISELKLTMYA-FQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
             Y PS+   + + + A ++  +  D   ++++ +   V E+ ++I +E    +     F +
Sbjct:   180 YQPSY-RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 238

Query:   141 DGYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
               +++   LPVPP  +    ++ G +    DL+   L  ++K  + ++ + +   N  + 
Sbjct:   239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLT-HKLSDIIKTNQQLQRNEA---NGAAA 294

Query:   200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
              V ++D++L       +            + G    P  + K  L+    ++R   + K 
Sbjct:   295 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGR--PLKSIKQRLKGKEGRIRGNLMGKR 352

Query:   256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
               FS+R+VIT D    ++ +GVP  IAQ +TF E V   N++ LQELV N+    Y    
Sbjct:   353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--G 409

Query:   316 SSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             + Y +RE G++             L+PG  V R + DGD +  NR PT HK S+    V 
Sbjct:   410 AKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVK 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             +    T ++N  +  P +ADFDGD ++L  PQSL  +AE+ E+  V +QL++       +
Sbjct:   470 ILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVM 529

Query:   426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
              +  D L ++++M K+  F+D  F   L M+  +    +P+PA+ K +    WT  Q+  
Sbjct:   530 GIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFS 587

Query:   482 SVLP 485
              ++P
Sbjct:   588 LIIP 591

 Score = 104 (41.7 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 23/77 (29%), Positives = 43/77 (55%)

Query:   672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
             P +K G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++ Y
Sbjct:   811 PESK-GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 869

Query:   732 DGTVRNVCSNSIIQFDY 748
             DGTVRN  +  ++Q  Y
Sbjct:   870 DGTVRNSLAQ-MVQLRY 885

 Score = 87 (35.7 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
 Identities = 34/129 (26%), Positives = 61/129 (47%)

Query:    17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
             ++FG+   +EI   S++        +   P LG  ++         G+C +C  +    C
Sbjct:    18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTD-C 76

Query:    69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
              GHFG++EL  P++H   +++ LK+      Y  +L I  D  A R+L       E+LK+
Sbjct:    77 PGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI--DKSAPRVL-------EILKK 127

Query:   124 IPEETRKKL 132
                 ++K+L
Sbjct:   128 TGTNSKKRL 136

 Score = 68 (29.0 bits), Expect = 4.3e-27, Sum P(3) = 4.3e-27
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query:   697 ISTREVIVRSSRGLSEPGTLFKNL-MAVLRDVVICYDGTVRNVCSNSIIQ---FDYA--- 749
             +S + +IV  +  +S+       L M +L    +C     +N+C+ S +    FD+    
Sbjct:  1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLC----TKNMCTKSKLNSEAFDWLLGE 1065

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + +R   ++   GE VG LAA ++  PA +  L++
Sbjct:  1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100

 Score = 57 (25.1 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 33/152 (21%), Positives = 59/152 (38%)

Query:   943 VLRGASDSYLDKLSGVLANM--IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLI 999
             +LR  S+  +D +     ++  I+ VL +E + K    + + +   ++     V   HL 
Sbjct:  1335 LLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA---IEREMDNVISFDGSYVNYRHLA 1391

Query:  1000 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSV 1059
             LL + MT  G L+     G         ++  F E    +      +AA     D +  V
Sbjct:  1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILM-----EAAVHAEEDPVKGV 1446

Query:  1060 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
                   G+    GTG  FDL+   E  ++  +
Sbjct:  1447 SENIMLGQLARCGTGC-FDLVLDVEKCKYGME 1477


>UNIPROTKB|P16356 [details] [associations]
            symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
            GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
            EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
            PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
            PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
            GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
            WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
            InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
            Uniprot:P16356
        Length = 1856

 Score = 331 (121.6 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 112/424 (26%), Positives = 204/424 (48%)

Query:    82 YHPSHISELKLTMYA-FQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
             Y PS+   + + + A ++  +  D   ++++ +   V E+ ++I +E    +     F +
Sbjct:   180 YQPSY-RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 238

Query:   141 DGYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
               +++   LPVPP  +    ++ G +    DL+   L  ++K  + ++ + +   N  + 
Sbjct:   239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLT-HKLSDIIKTNQQLQRNEA---NGAAA 294

Query:   200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
              V ++D++L       +            + G    P  + K  L+    ++R   + K 
Sbjct:   295 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGR--PLKSIKQRLKGKEGRIRGNLMGKR 352

Query:   256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
               FS+R+VIT D    ++ +GVP  IAQ +TF E V   N++ LQELV N+    Y    
Sbjct:   353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--G 409

Query:   316 SSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             + Y +RE G++             L+PG  V R + DGD +  NR PT HK S+    V 
Sbjct:   410 AKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVK 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             +    T ++N  +  P +ADFDGD ++L  PQSL  +AE+ E+  V +QL++       +
Sbjct:   470 ILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVM 529

Query:   426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
              +  D L ++++M K+  F+D  F   L M+  +    +P+PA+ K +    WT  Q+  
Sbjct:   530 GIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFS 587

Query:   482 SVLP 485
              ++P
Sbjct:   588 LIIP 591

 Score = 104 (41.7 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 23/77 (29%), Positives = 43/77 (55%)

Query:   672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
             P +K G ++  +  GL P E   H++  RE ++ ++   +E G + + L+  +  V++ Y
Sbjct:   811 PESK-GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 869

Query:   732 DGTVRNVCSNSIIQFDY 748
             DGTVRN  +  ++Q  Y
Sbjct:   870 DGTVRNSLAQ-MVQLRY 885

 Score = 87 (35.7 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
 Identities = 34/129 (26%), Positives = 61/129 (47%)

Query:    17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
             ++FG+   +EI   S++        +   P LG  ++         G+C +C  +    C
Sbjct:    18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTD-C 76

Query:    69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
              GHFG++EL  P++H   +++ LK+      Y  +L I  D  A R+L       E+LK+
Sbjct:    77 PGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI--DKSAPRVL-------EILKK 127

Query:   124 IPEETRKKL 132
                 ++K+L
Sbjct:   128 TGTNSKKRL 136

 Score = 68 (29.0 bits), Expect = 4.3e-27, Sum P(3) = 4.3e-27
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query:   697 ISTREVIVRSSRGLSEPGTLFKNL-MAVLRDVVICYDGTVRNVCSNSIIQ---FDYA--- 749
             +S + +IV  +  +S+       L M +L    +C     +N+C+ S +    FD+    
Sbjct:  1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLC----TKNMCTKSKLNSEAFDWLLGE 1065

Query:   750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             + +R   ++   GE VG LAA ++  PA +  L++
Sbjct:  1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100

 Score = 57 (25.1 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
 Identities = 33/152 (21%), Positives = 59/152 (38%)

Query:   943 VLRGASDSYLDKLSGVLANM--IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLI 999
             +LR  S+  +D +     ++  I+ VL +E + K    + + +   ++     V   HL 
Sbjct:  1335 LLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA---IEREMDNVISFDGSYVNYRHLA 1391

Query:  1000 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSV 1059
             LL + MT  G L+     G         ++  F E    +      +AA     D +  V
Sbjct:  1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILM-----EAAVHAEEDPVKGV 1446

Query:  1060 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
                   G+    GTG  FDL+   E  ++  +
Sbjct:  1447 SENIMLGQLARCGTGC-FDLVLDVEKCKYGME 1477


>UNIPROTKB|G4NBX7 [details] [associations]
            symbol:MGG_01158 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
            KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
            ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
            KEGG:mgr:MGG_01158 Uniprot:G4NBX7
        Length = 1719

 Score = 213 (80.0 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 61/182 (33%), Positives = 95/182 (52%)

Query:   336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
             VHR I +GD V +NR PT HK S+    V V   + T++++   C   +ADFDGD +++ 
Sbjct:   593 VHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMH 652

Query:   395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL-LSLKVMFKKYFLDKAFTQQLA 453
             +PQ+  A+ E L+L   + Q +S   G     L  D L +S+ +  K  +LD++   +L 
Sbjct:   653 FPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELV 712

Query:   454 MFALSP-----------LPRPALSKARCSARWTALQILQSVLPP--GFDSCGDRYLIKKS 500
               AL P           L  PA+ K +  ARWT  Q++ +VL      D CGD ++  K+
Sbjct:   713 YNALRPESGHILRERIELVPPAIIKPK--ARWTGKQVITTVLRNIRPLD-CGDLWMTGKT 769

Query:   501 EV 502
             +V
Sbjct:   770 QV 771

 Score = 116 (45.9 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 46/172 (26%), Positives = 77/172 (44%)

Query:   143 YILEYLPVPPNCLSVPDISDGVSTMS----SDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
             + ++ L VPPN    P+   G S ++    + L  A+LK   K  +I R  ++ T     
Sbjct:   371 FFVQTLLVPPNRFR-PEARTGDSQINEAQQNSLYKAILKASTKLTQIFRDLQNPTSLLSQ 429

Query:   199 QE-VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
             +   ++  L  A  +  +   T   +     +   ++      K  LEK   LF +   G
Sbjct:   430 RHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMG 489

Query:   258 ----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
                 +++RSVI+ D     NEIGVP   A+++T+ E V  HN   +Q+ V N
Sbjct:   490 KRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVIN 541

 Score = 96 (38.9 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query:    57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
             C +C    P  C GH G+IELP+P+YHP  + ++
Sbjct:    62 CATCNLG-PSACPGHPGHIELPVPVYHPVFMDQV 94

 Score = 80 (33.2 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G I   F  G+ P E   H ++ RE ++ ++   S  G L + L+  +  + I YD +VR
Sbjct:   998 GYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVR 1057

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1058 DA-DGSLVQFLY 1068

 Score = 71 (30.1 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 28/93 (30%), Positives = 40/93 (43%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL L+A+ MT +G    FN  G        NV  PFT+ +        + A      D+L
Sbjct:  1629 HLNLIADHMTRSGGFTPFNRMGLSG-----NVS-PFTKMSFETTLAFLKDAVLDGDWDDL 1682

Query:  1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFN 1089
             S+       G+   VGTG+ FD+  Q     F+
Sbjct:  1683 STPSGRLVMGRLGHVGTGA-FDVFTQAPMSHFD 1714

 Score = 53 (23.7 bits), Expect = 1.6e-26, Sum P(6) = 1.6e-26
 Identities = 27/110 (24%), Positives = 51/110 (46%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK-NLMAVLRDVVICYDGTVRNVC-- 739
             FF G +P   M +   TR     S +      +  K N  A++++     D  +RN    
Sbjct:  1132 FFTG-EPVSSMLNP--TRYAYATSEKFFDAMSSYVKENPDALIKEK----DDKLRNSGPQ 1184

Query:   740 SNSIIQF-----DYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             S+SI++      +  ++A+   SL   GE VG++A  ++  P+ +  L++
Sbjct:  1185 SSSIVRLNRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNT 1234

 Score = 42 (19.8 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query:   487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
             G  S   + L +  E + G  D+  +      +V ++    GP    +   ++  LL   
Sbjct:   777 GVHSEEGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRY 836

Query:   547 LFADGFSVSLEDFSLS 562
             L    F+  ++D  L+
Sbjct:   837 LNMRAFTCGMDDLKLT 852


>SGD|S000005868 [details] [associations]
            symbol:RPA190 "RNA polymerase I largest subunit A190"
            species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
            eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
            EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
            RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
            DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
            PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
            GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
            NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
            Uniprot:P10964
        Length = 1664

 Score = 147 (56.8 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 57/190 (30%), Positives = 93/190 (48%)

Query:   336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
             V+R I + D V +NR PT HK S+    V V  ++ T++++    G  +ADFDGD +++ 
Sbjct:   577 VYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMH 636

Query:   395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQQLA 453
             +PQ+  A+AE L L + + Q L+  +G+    L  D + + + +  K  F  +   QQ  
Sbjct:   637 FPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI 696

Query:   454 MFALSP------------LPRPALSKARCSARWTALQILQSVL----PPGFDSCGDRYLI 497
                + P            LP P + K      WT  QI+ +VL    PP  D  G   LI
Sbjct:   697 YGCIRPEDGHTTRSKIVTLP-PTIFKPY--PLWTGKQIITTVLLNVTPP--DMPGIN-LI 750

Query:   498 KKSEVLKGDF 507
              K+++ K ++
Sbjct:   751 SKNKI-KNEY 759

 Score = 123 (48.4 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 48/178 (26%), Positives = 80/178 (44%)

Query:   141 DGYILEYLPVPPNCLSVPD-ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
             D + ++ L VPP    +P  + + V   S +    +L KVL    +IR         +  
Sbjct:   353 DSFFMDVLVVPPTRFRLPSKLGEEVHENSQN---QLLSKVLTTSLLIRDLNDDLSKLQKD 409

Query:   200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT--------KAWLEKMRTLF 251
             +V   D ++   + +    T ++  DV+A    ++    T+        K  LEK   LF
Sbjct:   410 KVSLEDRRVIFSRLMNAFVTIQN--DVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLF 467

Query:   252 IRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
              +   G    +++RSVI+ D     NEIGVP   A ++T+ E V  +NI  L++ V N
Sbjct:   468 RKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVIN 525

 Score = 108 (43.1 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 30/92 (32%), Positives = 43/92 (46%)

Query:    13 QIVGIRFGLATQKEICTASISDCSISHA-SQLANPFLG--LPLEFGK-----CESCGTSE 64
             +I  + FG+ T KEI   S    +       L +P  G    L  G      C +CG  E
Sbjct:    10 EITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNLCSTCGLDE 69

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYA 96
                C GH G+IELP+P Y+P   ++L + + A
Sbjct:    70 KF-CPGHQGHIELPVPCYNPLFFNQLYIYLRA 100

 Score = 100 (40.3 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G +KG F+ G+ P E   H ++ RE ++ ++   S  G L + L   L  V + YD ++R
Sbjct:   980 GYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIR 1039

Query:   737 NVCSNSIIQFDYAVNA 752
             +    +++QF Y  +A
Sbjct:  1040 DA-DGTLVQFMYGGDA 1054

 Score = 82 (33.9 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 35/139 (25%), Positives = 67/139 (48%)

Query:   949 DSYLDKLSGVLANMIYPVLLETIIK--ENWWVRQRLSASVTMVAKGVLKEHLILLANSMT 1006
             ++++D + G+ +N +  VL    ++   N  V + ++   +  A  V   HL L+A+ MT
Sbjct:  1533 EAFID-VDGITSNDVAAVLKTYGVEAARNTIVNE-INNVFSRYAISVSFRHLDLIADMMT 1590

Query:  1007 CAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWG 1066
               G  + FN  G +  + S  +++ +     F+ +   +   E+   D+ S+ +     G
Sbjct:  1591 RQGTYLAFNRQGMETSTSSF-MKMSYETTCQFLTKAVLDN--EREQLDSPSARIVV---G 1644

Query:  1067 KHVAVGTGSRFDLLWQTEN 1085
             K   VGTGS FD+L +  N
Sbjct:  1645 KLNNVGTGS-FDVLAKVPN 1662

 Score = 58 (25.5 bits), Expect = 1.3e-26, Sum P(7) = 1.3e-26
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query:  1066 GKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLE 1125
             GK V V  G  F  +W  + E F   DG+   D   ++++  G+E      +  E++ + 
Sbjct:  1515 GKRVLVTEGVNFQAMW--DQEAFIDVDGITSNDVAAVLKTY-GVEAA-RNTIVNEINNVF 1570

Query:  1126 DEFDWSLSPEH-NLCSD 1141
               +  S+S  H +L +D
Sbjct:  1571 SRYAISVSFRHLDLIAD 1587

 Score = 55 (24.4 bits), Expect = 9.1e-24, Sum P(7) = 9.1e-24
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query:    20 GLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEP 65
             G  T++   TA+++D       +L + F    L  GKC++CG   P
Sbjct:   200 GRTTERGSFTATVND----ERKKLVHEFHKKLLSRGKCDNCGMFSP 241

 Score = 52 (23.4 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 19/76 (25%), Positives = 30/76 (39%)

Query:   487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
             G  S  +  L K   +L G  D+    +    IV S+    GPE   +    L  L    
Sbjct:   761 GKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNY 820

Query:   547 LFADGFSVSLEDFSLS 562
             + A  F+  ++D  L+
Sbjct:   821 ITATAFTCGMDDLRLT 836

 Score = 49 (22.3 bits), Expect = 5.3e-29, Sum P(7) = 5.3e-29
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query:   745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             +F   +  +   SL   GE VG++A+ ++  P+ +  L++
Sbjct:  1165 KFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNT 1204

 Score = 42 (19.8 bits), Expect = 4.8e-25, Sum P(7) = 4.8e-25
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query:  1141 DKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEK 1187
             D+P  ED +E     E   +    DS+ +    SED+   +   + K
Sbjct:  1385 DEPD-EDEIETMREAEKSSDEEGIDSDKESDSDSEDEDVDMNEQINK 1430


>CGD|CAL0001661 [details] [associations]
            symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
            complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
            EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
            ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
            GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
            Uniprot:Q59LW3
        Length = 1665

 Score = 166 (63.5 bits), Expect = 9.3e-29, Sum P(5) = 9.3e-29
 Identities = 60/205 (29%), Positives = 103/205 (50%)

Query:   333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCI 391
             G+ V+R I + D V +NR PT HK S+    V V   + T++++    G  +ADFDGD +
Sbjct:   556 GKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 615

Query:   392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQ 450
             ++ +PQ+  A+AE L L + + Q L+  +G+    L  D + + + +  K  F ++   Q
Sbjct:   616 NMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQ 675

Query:   451 QLAMFALSP------------LPRPALSKARCSARWTALQILQSVL---PPGFDSCGDRY 495
             QL    + P            +P PA+ K      WT  Q++ +VL    P  D+     
Sbjct:   676 QLIYGCIRPEDGHTSKNRIVTVP-PAIYKPEML--WTGKQVITTVLLNIKP--DNVPGVN 730

Query:   496 LIKKSEVLKGDFDRDTIPSVINEIV 520
             LI K+++ K D+  ++  S  NE++
Sbjct:   731 LISKNKI-KSDYWSES--STENEVI 752

 Score = 129 (50.5 bits), Expect = 9.3e-29, Sum P(5) = 9.3e-29
 Identities = 56/226 (24%), Positives = 106/226 (46%)

Query:   101 IKNDGVAQRLLSSCCEVKEMLKRI--PEET--RKKLAGKGYF--PQDG--YILEYLPVPP 152
             IK+ G ++ +LS+  EV+ +L+ +   E+   +K    + Y   P  G  +  + + VPP
Sbjct:   291 IKHKGGSKYVLST--EVRNILRSLFHKEQAILQKVFHSRPYQHDPISGDLFFKQSVLVPP 348

Query:   153 NCLSVPD-ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVG 211
                 +P  + D +   + +    +L  ++K   +IR       N   +++   D ++   
Sbjct:   349 TRFRLPSKLGDEIHENAQN---ELLSNIIKTSVLIRDLNERITNMYKEKISGEDKKIIFN 405

Query:   212 QYL--------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FS 259
             + +        +V     S+++ +A  G  + PN   K  LEK   LF +   G    ++
Sbjct:   406 RLMNAFVTLQNDVNAFIDSTKNQNAPAG--KIPNPGIKQALEKKEGLFRKHMMGKRVNYA 463

Query:   260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             +RSVI+ D     NEIGVP   A+++T+ E V  +N + L++ V N
Sbjct:   464 ARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVIN 509

 Score = 104 (41.7 bits), Expect = 9.3e-29, Sum P(5) = 9.3e-29
 Identities = 27/86 (31%), Positives = 41/86 (47%)

Query:    13 QIVGIRFGLATQKEICTASISDCSISHA-SQLANPFLG--LPLEFGK-----CESCGTSE 64
             +I  + FG+ + +EI   S    +       L +P  G    L  G      C +CG  E
Sbjct:    10 EITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLRNVCTTCGLDE 69

Query:    65 PGKCEGHFGYIELPIPIYHPSHISEL 90
                C GH G+IELP+P+Y+P   ++L
Sbjct:    70 KF-CPGHLGHIELPVPVYNPMFFNQL 94

 Score = 94 (38.1 bits), Expect = 9.3e-29, Sum P(5) = 9.3e-29
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G IK  F+ G+ P E   H ++ RE ++ ++   S  G L + L   L  V + YD +VR
Sbjct:   962 GYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVR 1021

Query:   737 NVCSNSIIQFDY---AVNARK-SH 756
             +    ++IQF Y   AV+  K SH
Sbjct:  1022 DA-DGTLIQFLYGGDAVDTTKQSH 1044

 Score = 78 (32.5 bits), Expect = 9.3e-29, Sum P(5) = 9.3e-29
 Identities = 37/136 (27%), Positives = 61/136 (44%)

Query:   949 DSYLDKLSGVLANMIYPVLLETIIK--ENWWVRQRLSASVTMVAKGVLKEHLILLANSMT 1006
             D +++ ++G+ +N +Y VL    ++   N  V +      T     V   HL L+A+ MT
Sbjct:  1535 DDFIN-VNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTY-GISVSSRHLDLIADMMT 1592

Query:  1007 CAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWG 1066
               G  + FN  G  + S S  +++ +     F+ +   +   E+     L S  A    G
Sbjct:  1593 REGTYLAFNRQGIDS-STSAFMKMSYETTCQFLTKAVLDGDREE-----LESPSAKIVMG 1646

Query:  1067 KHVAVGTGSRFDLLWQ 1082
             K   VGTGS FD+  Q
Sbjct:  1647 KLSNVGTGS-FDVFAQ 1661

 Score = 52 (23.4 bits), Expect = 1.7e-23, Sum P(5) = 1.7e-23
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query:    17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPG 66
             ++ G    K + TAS+S+   +   +     L  P    KC +CG   PG
Sbjct:   190 LKDGRTNHKGVVTASVSEERKATIHEFYKRLLSRP----KCTNCGMYSPG 235

 Score = 49 (22.3 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query:   745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             +F   +  +   SL   GE VG++A+ ++  P+ +  L++
Sbjct:  1154 KFRALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNT 1193

 Score = 47 (21.6 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
 Identities = 25/131 (19%), Positives = 52/131 (39%)

Query:   490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
             S  +  + K  E+L G  D+    +    IV S+    GP    +    L  L    +  
Sbjct:   746 STENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMM 805

Query:   550 DGFSVSLEDFSLS-KAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
               F+  ++D  L+ +   W  +K+I      +    +T+   +D   +N+ + +   + +
Sbjct:   806 TAFTCGMDDLRLTDEGNTW--RKDILKQSVDIGRVAATEVTNLDEDTKNNNKELLRRLEE 863

Query:   609 FILKSSTLGYL 619
              +   + LG L
Sbjct:   864 ILRDDNKLGIL 874


>UNIPROTKB|Q6NX41 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
            UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
            SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
            HOVERGEN:HBG097653 Uniprot:Q6NX41
        Length = 566

 Score = 305 (112.4 bits), Expect = 6.9e-28, Sum P(2) = 6.9e-28
 Identities = 117/407 (28%), Positives = 181/407 (44%)

Query:    53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
             +FG  +  G  +  K +GH G        Y P  I    L +YA    +  D   +++L 
Sbjct:   163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216

Query:   113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
             S   V E+ KRI +E    L  +  Y   +  I+  LPVPP  +    +  G +    DL
Sbjct:   217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276

Query:   172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
             +     K+   V+I    R    N  +  V + D++L   Q+            +     
Sbjct:   277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330

Query:   232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
              S  P  + K  L+    ++R   + K   FS+R+VIT D    ++++GVP  IA  +TF
Sbjct:   331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390

Query:   288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
              E V   NI+ LQELV   N       Y   D      LR   K     L+ G  V R +
Sbjct:   391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
              DGD V  NR PT HK S+    V +    T ++N  +  P +ADFDGD ++L  PQSL 
Sbjct:   451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
              +AE+ EL  V + +++  +    + +  D L +++   K+  FL++
Sbjct:   511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

 Score = 89 (36.4 bits), Expect = 6.9e-28, Sum P(2) = 6.9e-28
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
             ++FG+ +  E+   S+++  I +             L +P  G+    G+C++C  +   
Sbjct:    21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79

Query:    67 KCEGHFGYIELPIPIYH 83
             +C GHFG+IEL  P++H
Sbjct:    80 ECPGHFGHIELAKPVFH 96


>POMBASE|SPBC4C3.05c [details] [associations]
            symbol:nuc1 "DNA-directed RNA polymerase I complex large
            subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
            GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
            GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
            EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
            STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
            KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
            Uniprot:P15398
        Length = 1689

 Score = 165 (63.1 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 50/162 (30%), Positives = 81/162 (50%)

Query:   336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
             V+R + +GD + +NR PT HK S+ A    +   + T++++   C   +ADFDGD +++ 
Sbjct:   593 VYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMH 652

Query:   395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD-ALLSLKVMFKKYFLDKAFTQQLA 453
             +PQS  A++E   + + + Q L   +G+    L  D  ++ + +  K  F  +   QQL 
Sbjct:   653 FPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLL 712

Query:   454 MFALSP-----------LPRPALSKARCSARWTALQILQSVL 484
               AL P           LP PA+   R    WT  QI+ SVL
Sbjct:   713 FQALKPDETGMYGRIKTLP-PAIQ--RPGIYWTGKQIISSVL 751

 Score = 123 (48.4 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 65/259 (25%), Positives = 111/259 (42%)

Query:    62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE-- 119
             +S   + EG   + E P P+ + S         Y    +++N    +RL      VKE  
Sbjct:   289 SSNESEVEGIDLFEEDPNPLKNKSKSPIAHGAKYMTSTEVRNH--LRRLF-----VKENV 341

Query:   120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
             +L R+    R K A       D + L+ + VPP     P    G   +  ++   +L ++
Sbjct:   342 VLSRLYAHKRGKPASA-----DMFFLQNIAVPPTRFR-PASKMG-DEVHENIQNELLTRI 394

Query:   180 LKQ-VEIIRSSRSGTPNFESQEVE-----SNDLQLAVGQYLEVRGTAKSSRDVD---ARF 230
             L+  ++I   S+  T      E E     S   +L +  +++++    S  D +   +  
Sbjct:   395 LQSSIQIASLSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSG 454

Query:   231 GVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
             G S+      K  LEK   LF +   G    +++RSVI+ D     NEIGVP   A ++T
Sbjct:   455 GQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLT 514

Query:   287 FEERVNVHNINYLQELVDN 305
             + E V ++N N ++  V N
Sbjct:   515 YPEPVTLYNFNEMRNAVIN 533

 Score = 100 (40.3 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query:    25 KEICTASISDCSISHASQ--LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIY 82
             K+I    + D +++H +   L +  LG  L+   C +C   E   C GHFG+I LPIP Y
Sbjct:    30 KQIVNPVLLD-NLNHPTNGGLYDLALGPYLKNSVCATCHLDER-YCPGHFGHIVLPIPAY 87

Query:    83 HPSHISEL 90
             HP   S++
Sbjct:    88 HPLFFSQM 95

 Score = 96 (38.9 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 30/85 (35%), Positives = 43/85 (50%)

Query:   666 PMDLNYPT-AKYG-LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
             P  + Y T AK G  I   F  G+ P E   H ++ RE ++ ++   S  G L + LM  
Sbjct:   980 PSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKH 1039

Query:   724 LRDVVICYDGTVRNVCSNSIIQFDY 748
             L  + + YD TVR+    SI+QF Y
Sbjct:  1040 LEGLCVQYDHTVRD-SDGSIVQFHY 1063

 Score = 61 (26.5 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 27/86 (31%), Positives = 42/86 (48%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV---PFTEATLFMPRKCFEKAAEKRHT 1053
             HL L+A+ MT       F  GGYKA +R + ++    PF + +         +AA +   
Sbjct:  1604 HLSLIADYMT-------FE-GGYKAFNR-MGIEYNTSPFAKMSFETTCHFLTEAALRGDV 1654

Query:  1054 DNLSSVVAACSWGKHVAVGTGSRFDL 1079
             D+LS+  +    G+    GTGS FD+
Sbjct:  1655 DDLSNPSSRLVVGRVGNFGTGS-FDI 1679

 Score = 57 (25.1 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query:   745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             +F   +  R   SL   GE VGVLA+ ++  P+ +  L++
Sbjct:  1174 KFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNT 1213

 Score = 41 (19.5 bits), Expect = 2.8e-27, Sum P(7) = 2.8e-27
 Identities = 17/75 (22%), Positives = 28/75 (37%)

Query:   489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
             DS     L    E+L G  D+ +  +    +V S+    GP+        L  L      
Sbjct:   778 DSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQ 837

Query:   549 ADGFSVSLEDFSLSK 563
               GF+  ++D  L +
Sbjct:   838 MRGFTCRMDDLRLDE 852

 Score = 39 (18.8 bits), Expect = 4.8e-19, Sum P(7) = 4.8e-19
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query:   293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
             V N++  + ++ N       DGS S    +   GH  +        RI D
Sbjct:   137 VENVSLTEAIIKNSNGTPLEDGSDS---EDSGLGHDDIAKDAATLMRIRD 183

 Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(5) = 2.9e-20
 Identities = 15/70 (21%), Positives = 34/70 (48%)

Query:   510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
             DT+P VI E V         + + EF++ +    M +++ +  +  L  + + +AA   I
Sbjct:  1537 DTVPKVITEGVNL-------KAIWEFYNEIS---MNDIYTNDIAAILRIYGV-EAARNAI 1585

Query:   570 QKEIQALYSL 579
               E+ +++ +
Sbjct:  1586 VHEVSSVFGV 1595


>WB|WBGene00012999 [details] [associations]
            symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
            PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
            ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
            EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
            CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
        Length = 1737

 Score = 149 (57.5 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 61/200 (30%), Positives = 95/200 (47%)

Query:   118 KEMLKRIPEETRKKLAGKGYF-PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
             K +LK  P     +L G+    P DG  LE + VPP       +  G      D     L
Sbjct:   328 KLLLKLFPMLV-DELNGEDMICPLDGLFLERILVPPKKFRPIRMFKGAQY--EDPQTLNL 384

Query:   177 KKVLKQVEIIRSSR---SGTPNFESQEVESNDLQLAV--GQ----YLEVRGTAKSSRDVD 227
             +KVL+  E I +      G  + + +E+ +N ++      Q    YL+++  A +  D D
Sbjct:   385 RKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQD 444

Query:   228 ARFGVSQDPNSTTKAWLEKMRTLF----IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
                G  +D  +  K  LEK + LF    + K   F+ RSVIT D Y  ++EIG+P   A+
Sbjct:   445 LNKG-DRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAK 503

Query:   284 RITFEERVNVHNINYLQELV 303
             ++TF E VN  N+N ++ L+
Sbjct:   504 KLTFTEPVNAFNVNEMKGLL 523

 Score = 122 (48.0 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 46/163 (28%), Positives = 76/163 (46%)

Query:   330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDG 388
             LR    V R + +GD + +NR P+ HK S+      V      +++N   C   +ADFDG
Sbjct:   571 LRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDG 630

Query:   389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKA 447
             D ++    QS  A+ EV E+ +V    L   +    L L  D ++S + +  +  FL+K 
Sbjct:   631 DEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKE 690

Query:   448 -FTQQ-LAMFALSP----LPRPALSKARCSARWTALQILQSVL 484
              F    LA FA       +P P +   +    WT  Q++ +++
Sbjct:   691 DFMHLVLASFAQYSKRIEIPPPTILYPK--RLWTGKQVITTIV 731

 Score = 103 (41.3 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 34/112 (30%), Positives = 53/112 (47%)

Query:    40 ASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHI----SELKLT-M 94
             A  L +P LG    F  C +C   E   C GH G+I+L +P+++P       + LK + +
Sbjct:    50 AGGLYDPILGPDNTFDMCMTCNQYER-HCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCV 108

Query:    95 YAFQLQIKNDGVAQRLLSS---CCE--VKEMLKRIPEETRKKLAGKGYFPQD 141
             +  +L  K DGV  R+L +   C E  V+ +   +    R K+A    F  D
Sbjct:   109 HCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDLESILRDKIANADLFGDD 160

 Score = 92 (37.4 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 34/113 (30%), Positives = 53/113 (46%)

Query:   636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
             G LG Q+   GK  + T+       F    P     P A  G I   F  G++P E   H
Sbjct:   950 GCLG-QIELEGKRMAVTIAGRTLPSFRCFDPS----PRAG-GYIDQRFLTGMNPQELFFH 1003

Query:   696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
             +++ RE ++ ++   S  G L + ++  L  + + YD TVR+    S+IQF Y
Sbjct:  1004 TMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDH-DGSVIQFRY 1055

 Score = 90 (36.7 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 48/147 (32%), Positives = 65/147 (44%)

Query:   954 KLSGVL-ANMIYPVLLETIIKENWWVRQRLSASVTMVAKGVL--------KEHLILLANS 1004
             K + VL  N +Y   L  I+ EN+ V +  S ++T     V         K HL L A+ 
Sbjct:  1585 KHADVLDVNSVYSNDLNLIL-ENYGV-EACSKAITTEMNNVFAVYGIEVSKRHLSLTADY 1642

Query:  1005 MTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACS 1064
             MT  G +  FN G   + S  L  ++ F E T+   R+      E    DN++S  A   
Sbjct:  1643 MTFTGQIQPFNRGAMSSSSSPLQ-KMTF-ETTMAFLREALLHGEE----DNVNSPSARLV 1696

Query:  1065 WGKHVAVGTGSRFDLL----WQTENEE 1087
              G     GTGS FDLL     Q+E EE
Sbjct:  1697 MGALPRGGTGS-FDLLLDTKMQSEREE 1722

 Score = 49 (22.3 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1227 SLADPGENVGLLAAQSIGEPSTQMTLNT 1254

 Score = 37 (18.1 bits), Expect = 5.4e-27, Sum P(7) = 5.4e-27
 Identities = 16/80 (20%), Positives = 29/80 (36%)

Query:   486 PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
             P FD      + ++ E+L G  D+    +    +    F   G    ++       L   
Sbjct:   763 PQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTT 822

Query:   546 NLFADGFSVSLEDFSLSKAA 565
              L   GF++ + D  + K A
Sbjct:   823 YLQFHGFTLGVADILVVKDA 842


>TAIR|locus:2076661 [details] [associations]
            symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
            "DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
            "mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
            import into nucleus" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
            PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
            ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
            PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
            KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
            PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
            Uniprot:Q9SVY0
        Length = 1670

 Score = 187 (70.9 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 44/122 (36%), Positives = 66/122 (54%)

Query:   333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCI 391
             G+ VHR + DGD V +NR PT HK SL A  V V   + T++++   C   +ADFDGD +
Sbjct:   549 GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEM 608

Query:   392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
             ++ +PQ   ++AE   + +   Q     NG     L  D ++S  ++ K+  FLDK    
Sbjct:   609 NVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFN 668

Query:   451 QL 452
             QL
Sbjct:   669 QL 670

 Score = 132 (51.5 bits), Expect = 1.5e-18, Sum P(5) = 1.5e-18
 Identities = 67/243 (27%), Positives = 103/243 (42%)

Query:   143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
             + LE + VPP     P  + G S M    ++  L KV++   I+ ++ +   +       
Sbjct:   341 FFLESVLVPPTKFR-PPTTGGDSVMEHPQTVG-LNKVIESNNILGNACTNKLDQSKVIFR 398

Query:   203 SNDLQLAVGQYLEVR-GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG---- 257
               +LQ +V    + +  T +S RD     G+ Q         LEK   LF +K  G    
Sbjct:   399 WRNLQESVNVLFDSKTATVQSQRDSS---GICQ--------LLEKKEGLFRQKMMGKRVN 447

Query:   258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT-----YS 312
              + RSVI+ D Y  VN+IG+P   A ++T+ ERV   N+  L+E + N   +      YS
Sbjct:   448 HACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYS 507

Query:   313 DGSSSYSLREGSKGHTFLRPGQVVHRRIMD--GDTVFIN-RPPTTHKHSLQALSVYVHDD 369
             D SS+  L    K    +    +  R      G T  IN    T H+H      V V+  
Sbjct:   508 DKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQ 567

Query:   370 HTV 372
              T+
Sbjct:   568 PTL 570

 Score = 104 (41.7 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 33/92 (35%), Positives = 45/92 (48%)

Query:   665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
             +P D + P A  G I   F  GL P E   H ++ RE +V ++   S  G L + LM  L
Sbjct:   983 HPWDWS-PRAG-GFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1040

Query:   725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
               + + YD TVR+    SIIQF Y  +    H
Sbjct:  1041 ESLKVNYDCTVRDA-DGSIIQFQYGEDGVDVH 1071

 Score = 101 (40.6 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 30/83 (36%), Positives = 41/83 (49%)

Query:    13 QIV-GIRFGLATQKEICTASISDCS--ISHASQLANPFLG--LPLEFGK------CESCG 61
             Q+V  +RF   T++++   S    +  I H   + NPF G    L+ G       C SCG
Sbjct:    25 QVVESVRFSFMTEQDVRKHSFLKVTSPILH-DNVGNPFPGGLYDLKLGPKDDKQACNSCG 83

Query:    62 TSEPGKCEGHFGYIELPIPIYHP 84
               +   C GH G+IEL  PIYHP
Sbjct:    84 QLKLA-CPGHCGHIELVFPIYHP 105

 Score = 73 (30.8 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 38/119 (31%), Positives = 51/119 (42%)

Query:   969 ETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNV 1028
             ETII+E   V +    SV++        HL L+A+ MT       F SGGY+ +SR   +
Sbjct:  1567 ETIIREINHVFKSYGISVSI-------RHLNLIADYMT-------F-SGGYRPMSRMGGI 1611

Query:  1029 QV---PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTE 1084
                  PF   T     K   +AA     D L +  A    G     GTG  FDL+ + E
Sbjct:  1612 AESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGC-FDLMQRVE 1669

 Score = 61 (26.5 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GEPVGVLAA ++  P+ +  L++
Sbjct:  1150 SLAQPGEPVGVLAAQSVGEPSTQMTLNT 1177

 Score = 51 (23.0 bits), Expect = 6.6e-05, Sum P(4) = 6.6e-05
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query:    21 LATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
             L T K++ TA ++  +  H          LP++F KC S
Sbjct:   714 LWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRS 752

 Score = 47 (21.6 bits), Expect = 0.00044, Sum P(5) = 0.00044
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query:   159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
             D+  G S+  SDL I++ K   K VE +  +      F  QE
Sbjct:  1096 DMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQE 1137

 Score = 42 (19.8 bits), Expect = 3.0e-13, Sum P(4) = 3.0e-13
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query:  1117 LGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVED 1151
             L E+ +      D S+    N CS K V  DL+ D
Sbjct:   893 LYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSD 927

 Score = 41 (19.5 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query:    80 PIYHP--SHISELKLTMYAFQLQIKNDGVAQRLLSS 113
             P  HP  +H S+   TM     +     +A++LLSS
Sbjct:   497 PDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSS 532

 Score = 41 (19.5 bits), Expect = 6.8e-21, Sum P(6) = 6.8e-21
 Identities = 26/97 (26%), Positives = 35/97 (36%)

Query:  1118 GEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSE-ADCRKSSED 1176
             G EVD L  +       E +    +   ED   + S +    E+   DSE  D   S ED
Sbjct:  1347 GTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGV-EDPEMDSENEDTEVSKED 1405

Query:  1177 KWEKLGTSLE--KPSSGWRTEGAWGKSSDDKLEKAGS 1211
               E    S+E  K   G +      K    K  +A S
Sbjct:  1406 TPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKS 1442

 Score = 41 (19.5 bits), Expect = 5.1e-16, Sum P(5) = 5.1e-16
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query:   810 IDRRVILYLNDC 821
             +DR ++ YLN C
Sbjct:   904 LDRSIVNYLNQC 915


>UNIPROTKB|E1BIX2 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
            GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
            RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
            Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
            NextBio:20876927 Uniprot:E1BIX2
        Length = 1717

 Score = 144 (55.7 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 44/162 (27%), Positives = 82/162 (50%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    V  ++  ++++   C   +ADFDGD ++
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYME 655

Query:   446 KAF---TQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
               F   T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   656 LVFRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 692

 Score = 98 (39.6 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP + GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+I+LP+ +Y+P    +L L +
Sbjct:    71 FTNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100

 Score = 94 (38.1 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   421 LEKKDGLFRKHMMGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQEL 480

Query:   300 QELVDN 305
             ++ V N
Sbjct:   481 RQAVIN 486

 Score = 92 (37.4 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1009 D-SDGSVVQFLY 1019

 Score = 64 (27.6 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query:  1156 ENKQENANWDSEADCRKSSEDKWEK----LGTSLEKPSSGWRTEGAWGKSSDDKLEKAGS 1211
             E ++E  ++DSE +  K  E+K E+     GT L++     + EG W   + ++    G+
Sbjct:  1419 EKQEEEVDYDSEEEEEKEEEEKEEEDIQEEGTGLKEGVQQEQEEGGW---APEESSLPGA 1475

Query:  1212 PSRKP 1216
             P  +P
Sbjct:  1476 PLTQP 1480

 Score = 50 (22.7 bits), Expect = 2.9e-21, Sum P(6) = 2.9e-21
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1203 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1230


>FB|FBgn0019938 [details] [associations]
            symbol:RpI1 "RNA polymerase I subunit" species:7227
            "Drosophila melanogaster" [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
            RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
            RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
            SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
            GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
            InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
            Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
        Length = 1642

 Score = 195 (73.7 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 63/214 (29%), Positives = 103/214 (48%)

Query:   292 NVH-NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP--G-QVVHRRIMDGDTVF 347
             +VH   NY+Q   D     TY    ++ S RE         P  G ++VHR +++GD + 
Sbjct:   471 DVHPGANYIQ---DKNGFTTYIPADNA-SKRESLAKLLLSNPKDGIKIVHRHVLNGDVLL 526

Query:   348 INRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
             +NR P+ HK S+      + H + T +++   C   +ADFDGD ++  YPQS  A+AE  
Sbjct:   527 LNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAY 586

Query:   407 ELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQQLAMFALSPLPR--- 462
              L +V    L   +G     L  D ++S +K+  +  F ++   QQL    LS L +   
Sbjct:   587 NLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIK 646

Query:   463 ---PALSKARCSARWTALQILQSVL----PPGFD 489
                P + K   +  W+  QIL +++    P G++
Sbjct:   647 LLPPTILKP--AVLWSGKQILSTIIINIIPEGYE 678

 Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(6) = 1.2e-13
 Identities = 60/252 (23%), Positives = 117/252 (46%)

Query:   139 PQDGYILEYLPV-PPNCLSVPDISDGVS-TMSSDLSIAMLKK------VLK-----QVEI 185
             P D + ++ LPV PP    +  + D +     +D+ I +++       VLK     Q ++
Sbjct:   291 PVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKL 350

Query:   186 IRSSRSGTPNFESQEVESN--DLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAW 243
                +++     + +          LA+   ++V      SR++ +  G+ Q      K+ 
Sbjct:   351 TEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSGEGLKQIIEK--KSG 408

Query:   244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
             L  +R+  + K   +++R+VIT D    V+EIG+P   A+++++   V   N+  L+++V
Sbjct:   409 L--IRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466

Query:   304 DNKLCL----TY---SDGSSSY------SLREGSKGHTFLRP--G-QVVHRRIMDGDTVF 347
              N   +     Y    +G ++Y      S RE         P  G ++VHR +++GD + 
Sbjct:   467 MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLL 526

Query:   348 INRPPTTHKHSL 359
             +NR P+ HK S+
Sbjct:   527 LNRQPSLHKPSI 538

 Score = 94 (38.1 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G I G F  G+ P +   H ++ RE ++ ++   S  G L + L+  L  + + YD TVR
Sbjct:   927 GFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVR 986

Query:   737 NVCSNSIIQFDY 748
             +   NS++QF Y
Sbjct:   987 D-SDNSVVQFLY 997

 Score = 88 (36.0 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query:    54 FGKC-ESCGTS-EPGKCEGHFGYIELPIPIYHPSHISELK-----LTMYAFQLQIKN 103
             +G+C + CGT  +   C GH G+IEL  P+Y+P  I  ++       ++ ++LQ+K+
Sbjct:    59 YGRCMDPCGTCLKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKD 115

 Score = 62 (26.9 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 27/86 (31%), Positives = 39/86 (45%)

Query:   995 KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTD 1054
             + HL L+A+ MT  G     +  G +  S  L  Q+ F  +  F+     + AA     D
Sbjct:  1560 RRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ-QMSFESSLQFL-----KSAAGFGRAD 1613

Query:  1055 NLSSVVAACSWGKHVAVGTGSRFDLL 1080
              LSS  +    G  V  GTG+ F+LL
Sbjct:  1614 ELSSPSSRLMVGLPVRNGTGA-FELL 1638

 Score = 56 (24.8 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GEPVG++AA ++  P+ +  L++
Sbjct:  1170 SLAAPGEPVGLIAAQSIGEPSTQMTLNT 1197

 Score = 46 (21.3 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query:  1129 DWSLS-PEHNLCSDKPVFEDLVEDQSWLEN 1157
             +W++S P   +C   P   DL E Q  + N
Sbjct:   692 NWNVSRPRPPICGTNPEGNDLSESQVQIRN 721

 Score = 40 (19.1 bits), Expect = 5.5e-21, Sum P(6) = 5.5e-21
 Identities = 14/81 (17%), Positives = 33/81 (40%)

Query:   485 PPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
             P G D    +  I+  E+L G  D+    +    ++  ++   G +       +   +  
Sbjct:   707 PEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFT 766

Query:   545 ENLFADGFSVSLEDFSLSKAA 565
               L  +GF++ ++D  ++  A
Sbjct:   767 FFLQLEGFTLGVKDILVTDVA 787

 Score = 38 (18.4 bits), Expect = 1.8e-13, Sum P(6) = 1.8e-13
 Identities = 6/13 (46%), Positives = 12/13 (92%)

Query:   639 GLQLSDRGKFYSK 651
             G++LS RG+F+++
Sbjct:   615 GVKLSIRGRFFNR 627


>RGD|620824 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
            transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
            EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
            UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
            PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
            UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
            ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
        Length = 1716

 Score = 146 (56.5 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 43/162 (26%), Positives = 83/162 (51%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             +VV R + +GD + +NR PT H+ S+QA   ++  ++  ++++   C   +ADFDGD ++
Sbjct:   543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 602

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662

Query:   446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
                +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699

 Score = 99 (39.9 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+I+LP+ +Y+P    +L L +
Sbjct:    71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100

 Score = 97 (39.2 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487

Query:   300 QELVDN 305
             ++ V N
Sbjct:   488 RQAVIN 493

 Score = 92 (37.4 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +VI YD TVR
Sbjct:   956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1016 D-SDGSVVQFLY 1026

 Score = 50 (22.7 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237

 Score = 50 (22.7 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 26/83 (31%), Positives = 36/83 (43%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL L+A+ M   G     N  G ++ S  L  Q+ F  +  F+     ++A      D L
Sbjct:  1636 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1689

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
              S  A    GK V  GTG  F+L
Sbjct:  1690 KSPSACLVVGKVVKGGTGL-FEL 1711

 Score = 37 (18.1 bits), Expect = 7.7e-14, Sum P(4) = 7.7e-14
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query:  1078 DLLWQTENEEFNQDD 1092
             D +W+ +  +FN  D
Sbjct:   855 DAIWRKDQRDFNMID 869


>UNIPROTKB|G3V7B7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
            GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 UniGene:Rn.24877
            Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
        Length = 1716

 Score = 146 (56.5 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 43/162 (26%), Positives = 83/162 (51%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             +VV R + +GD + +NR PT H+ S+QA   ++  ++  ++++   C   +ADFDGD ++
Sbjct:   543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 602

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662

Query:   446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
                +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699

 Score = 99 (39.9 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+I+LP+ +Y+P    +L L +
Sbjct:    71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100

 Score = 97 (39.2 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487

Query:   300 QELVDN 305
             ++ V N
Sbjct:   488 RQAVIN 493

 Score = 92 (37.4 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +VI YD TVR
Sbjct:   956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1016 D-SDGSVVQFLY 1026

 Score = 50 (22.7 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237

 Score = 50 (22.7 bits), Expect = 1.7e-20, Sum P(6) = 1.7e-20
 Identities = 26/83 (31%), Positives = 36/83 (43%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL L+A+ M   G     N  G ++ S  L  Q+ F  +  F+     ++A      D L
Sbjct:  1636 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1689

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
              S  A    GK V  GTG  F+L
Sbjct:  1690 KSPSACLVVGKVVKGGTGL-FEL 1711


>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
            symbol:polr1a "polymerase (RNA) I polypeptide A"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
            EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
            ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
        Length = 1710

 Score = 152 (58.6 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 34/104 (32%), Positives = 59/104 (56%)

Query:   332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDC 390
             P ++V+R I +GD + +NR PT H+ S+QA    +   +  ++++   C   +ADFDGD 
Sbjct:   539 PMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDE 598

Query:   391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS 434
             ++  +PQS  ++AE   L S ++Q L   +G     L  D ++S
Sbjct:   599 MNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVS 642

 Score = 95 (38.5 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 30/90 (33%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASISDCSISHASQLAN----PFLGL-PLEFGKCES---CGT-- 62
             ++ G+ FGL +  E  T  +S  +I++   L N       GL  L  G  ++   C T  
Sbjct:    11 RLEGMSFGLFSADE--TRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCM 68

Query:    63 SEPGKCEGHFGYIELPIPIYHPSHISELKL 92
              +   C GHFG+IELP+P+Y+P    +L L
Sbjct:    69 QDFSSCPGHFGHIELPLPVYNPLFFDKLYL 98

 Score = 92 (37.4 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  +
Sbjct:   427 LEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEM 486

Query:   300 QELVDN 305
             ++ V N
Sbjct:   487 RQAVLN 492

 Score = 91 (37.1 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   945 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVR 1004

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1005 D-SDGSVVQFLY 1015

 Score = 57 (25.1 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 30/83 (36%), Positives = 37/83 (44%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL L+A+ M   G     N  G ++ S  L  Q+ F   T F   K  ++A      D L
Sbjct:  1630 HLSLVADYMCFEGVYKPLNRFGIQSNSSPLQ-QMTFE--TSF---KFLKQATMLGSYDKL 1683

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
             SS  A    GK V  GTG  FDL
Sbjct:  1684 SSPSACLVVGKVVKGGTGI-FDL 1705

 Score = 44 (20.5 bits), Expect = 3.1e-20, Sum P(6) = 3.1e-20
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             +L   GE VG++AA ++  P+ +  L++
Sbjct:  1199 ALCDPGEAVGLVAAQSIGEPSTQMTLNT 1226

 Score = 41 (19.5 bits), Expect = 0.00018, Sum P(5) = 0.00018
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query:   285 ITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHT 328
             + F+E VN  N N  +  +   L  ++ + +    ++ G+KG T
Sbjct:   859 LKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGST 902


>MGI|MGI:1096397 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
            CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
            HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
            EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
            UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
            STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
            Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
            UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
            NextBio:297531 Bgee:O35134 Genevestigator:O35134
            GermOnline:ENSMUSG00000049553 Uniprot:O35134
        Length = 1717

 Score = 142 (55.0 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 43/162 (26%), Positives = 82/162 (50%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             +VV R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 602

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662

Query:   446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
                +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699

 Score = 98 (39.6 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+I+LP+ +Y+P    +L L +
Sbjct:    71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLL 100

 Score = 97 (39.2 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487

Query:   300 QELVDN 305
             ++ V N
Sbjct:   488 RQAVIN 493

 Score = 92 (37.4 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +VI YD TVR
Sbjct:   956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1016 D-SDGSVVQFLY 1026

 Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237

 Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(6) = 5.7e-20
 Identities = 26/83 (31%), Positives = 36/83 (43%)

Query:   997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
             HL L+A+ M   G     N  G ++ S  L  Q+ F  +  F+     ++A      D L
Sbjct:  1637 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1690

Query:  1057 SSVVAACSWGKHVAVGTGSRFDL 1079
              S  A    GK V  GTG  F+L
Sbjct:  1691 KSPSACLVVGKVVKGGTGL-FEL 1712

 Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(6) = 1.1e-18
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query:  1156 ENKQENANWDSEADCRKSSEDKWEKLG 1182
             E ++E  +++SE +  +  E++ ++ G
Sbjct:  1426 EKQEEEVDYESEEEGEEEEEEEVQEEG 1452


>UNIPROTKB|J9P5G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
            CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
            KEGG:cfa:475766 Uniprot:J9P5G4
        Length = 1717

 Score = 142 (55.0 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
 Identities = 44/162 (27%), Positives = 81/162 (50%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF---KKYF- 443
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F   ++Y  
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 655

Query:   444 -LDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
              L +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   656 LLYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 692

 Score = 101 (40.6 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+IELP+ +Y+P    +L L +
Sbjct:    71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLL 100

 Score = 95 (38.5 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   421 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480

Query:   300 QELVDN 305
             ++ V N
Sbjct:   481 RQAVIN 486

 Score = 92 (37.4 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1009 D-SDGSVVQFLY 1019

 Score = 50 (22.7 bits), Expect = 2.0e-19, Sum P(5) = 2.0e-19
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1203 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1230

 Score = 41 (19.5 bits), Expect = 0.00022, Sum P(4) = 0.00022
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query:   285 ITFEERVNVHNINYLQELVDNKLCLTYS------DGSSSYSLREGSKGHT 328
             + F+E VN H   Y  E+  NK C+ +       D +    ++ G+KG T
Sbjct:   863 LKFKEEVN-H---YSNEI--NKACMPFGLHRQFPDNNLQMMVQSGAKGST 906


>UNIPROTKB|E2R0G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
        Length = 1746

 Score = 142 (55.0 bits), Expect = 2.2e-19, Sum P(5) = 2.2e-19
 Identities = 44/162 (27%), Positives = 81/162 (50%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   548 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 607

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF---KKYF- 443
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F   ++Y  
Sbjct:   608 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 667

Query:   444 -LDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
              L +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   668 LLYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 704

 Score = 101 (40.6 bits), Expect = 2.2e-19, Sum P(5) = 2.2e-19
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+IELP+ +Y+P    +L L +
Sbjct:    71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLL 100

 Score = 95 (38.5 bits), Expect = 2.2e-19, Sum P(5) = 2.2e-19
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   433 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 492

Query:   300 QELVDN 305
             ++ V N
Sbjct:   493 RQAVIN 498

 Score = 92 (37.4 bits), Expect = 2.2e-19, Sum P(5) = 2.2e-19
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   961 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1020

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1021 D-SDGSVVQFLY 1031

 Score = 50 (22.7 bits), Expect = 2.2e-19, Sum P(5) = 2.2e-19
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1215 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1242

 Score = 41 (19.5 bits), Expect = 0.00024, Sum P(4) = 0.00024
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query:   285 ITFEERVNVHNINYLQELVDNKLCLTYS------DGSSSYSLREGSKGHT 328
             + F+E VN H   Y  E+  NK C+ +       D +    ++ G+KG T
Sbjct:   875 LKFKEEVN-H---YSNEI--NKACMPFGLHRQFPDNNLQMMVQSGAKGST 918


>UNIPROTKB|B9ZVN9 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
            HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
            ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
            ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
        Length = 1659

 Score = 138 (53.6 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
 Identities = 42/157 (26%), Positives = 77/157 (49%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
               +PQS   +AE   L   ++Q L   +G     L  D ++S   M  +  F  +    +
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655

Query:   452 LAMFALSP-LPRPAL---SKARCSARWTALQILQSVL 484
             L    L+  + R  L   S  +    WT  Q++ ++L
Sbjct:   656 LVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLL 692

 Score = 101 (40.6 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+IELP+ +Y+P    +L L +
Sbjct:    71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLL 100

 Score = 97 (39.2 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   421 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480

Query:   300 QELVDN 305
             ++ V N
Sbjct:   481 RQAVIN 486

 Score = 92 (37.4 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1009 D-SDGSVVQFLY 1019

 Score = 50 (22.7 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1203 SLCEPGEAVGLLAAQSIGEPSTQMTLNT 1230

 Score = 40 (19.1 bits), Expect = 0.00024, Sum P(4) = 0.00024
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query:   285 ITFEERVNVHNINYLQELVDNKLCLTYS------DGSSSYSLREGSKGHT 328
             + F+E VN H   Y  E+  NK C+ +       + S    ++ G+KG T
Sbjct:   863 LKFKEEVN-H---YSNEI--NKACMPFGLHRQFPENSLQMMVQSGAKGST 906


>UNIPROTKB|O95602 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
            initiation from RNA polymerase I promoter" evidence=TAS]
            [GO:0006362 "transcription elongation from RNA polymerase I
            promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
            I transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
            GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
            Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
            GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
            EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
            PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
            ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
            MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
            SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
            Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
            CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
            HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
            OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
            PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
            Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
        Length = 1720

 Score = 138 (53.6 bits), Expect = 3.4e-19, Sum P(5) = 3.4e-19
 Identities = 42/157 (26%), Positives = 77/157 (49%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
               +PQS   +AE   L   ++Q L   +G     L  D ++S   M  +  F  +    +
Sbjct:   596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655

Query:   452 LAMFALSP-LPRPAL---SKARCSARWTALQILQSVL 484
             L    L+  + R  L   S  +    WT  Q++ ++L
Sbjct:   656 LVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLL 692

 Score = 101 (40.6 bits), Expect = 3.4e-19, Sum P(5) = 3.4e-19
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+IELP+ +Y+P    +L L +
Sbjct:    71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLL 100

 Score = 97 (39.2 bits), Expect = 3.4e-19, Sum P(5) = 3.4e-19
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   421 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480

Query:   300 QELVDN 305
             ++ V N
Sbjct:   481 RQAVIN 486

 Score = 92 (37.4 bits), Expect = 3.4e-19, Sum P(5) = 3.4e-19
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1009 D-SDGSVVQFLY 1019

 Score = 50 (22.7 bits), Expect = 3.4e-19, Sum P(5) = 3.4e-19
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1203 SLCEPGEAVGLLAAQSIGEPSTQMTLNT 1230

 Score = 40 (19.1 bits), Expect = 0.00028, Sum P(4) = 0.00028
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query:   285 ITFEERVNVHNINYLQELVDNKLCLTYS------DGSSSYSLREGSKGHT 328
             + F+E VN H   Y  E+  NK C+ +       + S    ++ G+KG T
Sbjct:   863 LKFKEEVN-H---YSNEI--NKACMPFGLHRQFPENSLQMMVQSGAKGST 906


>UNIPROTKB|F1SVC3 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
        Length = 1723

 Score = 141 (54.7 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 42/162 (25%), Positives = 82/162 (50%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             ++V R + +GD + +NR PT H+ S+QA    +  ++  ++++   C   +ADFDGD ++
Sbjct:   540 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 599

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   600 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 659

Query:   446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
                +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   660 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 696

 Score = 99 (39.9 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 29/86 (33%), Positives = 44/86 (51%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   425 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 484

Query:   300 QELVDNKLCLTYSDGSSSYSLREGSK 325
             ++ V N    T   G+S     +GS+
Sbjct:   485 RQAVINGP--TVHPGASMVINEDGSR 508

 Score = 97 (39.2 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query:    13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
             ++ GI FG+ + +E+   S+ S  +  +   L NP   GL  L  G  +S   C T   +
Sbjct:    11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQD 70

Query:    65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
                C GH G+IELP+ +Y+P    +L L +
Sbjct:    71 FNNCPGHLGHIELPLTVYNPLLFDKLYLLL 100

 Score = 91 (37.1 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G + G F  G+ P E   H ++ RE +V ++   S  G L + ++  L  +V+ YD TVR
Sbjct:   953 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1012

Query:   737 NVCSNSIIQFDY 748
             +    S++QF Y
Sbjct:  1013 D-SDGSVVQFLY 1023

 Score = 50 (22.7 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             SL   GE VG+LAA ++  P+ +  L++
Sbjct:  1207 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1234

 Score = 42 (19.8 bits), Expect = 4.5e-19, Sum P(6) = 4.5e-19
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query:  1156 ENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEG 1196
             E ++E  +++SE D  K  ED+ EK    +++  S  R EG
Sbjct:  1423 EKQEEEVDYESEEDEEKE-EDE-EKEDEDIQEEGS-IRGEG 1460


>DICTYBASE|DDB_G0275759 [details] [associations]
            symbol:rpa1 "RNA polymerase I, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
            from RNA polymerase I promoter" evidence=ISS] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
            ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
            EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
            KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
            PANTHER:PTHR19376:SF11 Uniprot:Q86H36
        Length = 1615

 Score = 160 (61.4 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
 Identities = 52/166 (31%), Positives = 82/166 (49%)

Query:   287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTV 346
             F E  N H IN  +E  + ++ L       S +L   S  H      + V+R ++ GD V
Sbjct:   501 FIEDENGHLINLSKESQEKRIAL-------SKTLLT-SHPHAPRGVNKKVYRHLLSGDYV 552

Query:   347 FINRPPTTHKHSLQALSVYV--HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
               NR PT HK  +    V V   ++ T++++   C   +ADFDGD +++ +PQSL A AE
Sbjct:   553 LANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAE 612

Query:   405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQ 450
             + E+ +   Q L   NG     L  D +L+  ++ K+   D  FT+
Sbjct:   613 IREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKR---DTLFTK 655

 Score = 97 (39.2 bits), Expect = 1.5e-11, Sum P(5) = 1.5e-11
 Identities = 62/251 (24%), Positives = 99/251 (39%)

Query:   130 KKLAGKGYFPQ---DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEII 186
             KK  G+ +  +   D   +   PV P     P+  +G    S     +  K ++K  ++I
Sbjct:   320 KKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNG--RRSEHPQNSHYKGMVKSNKMI 377

Query:   187 RSSRSGTPNFESQEVESN-DLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE 245
             R S           V S  DLQ+ V    +   +  +S   +   G+ Q         LE
Sbjct:   378 RQSIDAGEGKAKFLVNSVCDLQMHVNNMYD--NSKSNSNTNEVANGIKQI--------LE 427

Query:   246 KMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQE 301
             K   LF +   G    +++R+VI+ D     NE+GVP   A+ +TF + V   N N L +
Sbjct:   428 KKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQ 487

Query:   302 LVDNKLCLTYSDGSSSY---SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
              V N        G   Y   +  E   GH      +   +RI    T+      T+H H+
Sbjct:   488 AVIN--------GPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLL-----TSHPHA 534

Query:   359 LQALS--VYVH 367
              + ++  VY H
Sbjct:   535 PRGVNKKVYRH 545

 Score = 88 (36.0 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
 Identities = 27/88 (30%), Positives = 39/88 (44%)

Query:     5 TSSTILEGQIVGIRFGLATQKEICTASISDC-SISHASQLANPFLG-L--PL--EFGKCE 58
             + S +++ +I  + F   T  ++   S+     I     L  P  G L  P     G  E
Sbjct:     4 SQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAE 63

Query:    59 SCGTSEPG--KCEGHFGYIELPIPIYHP 84
              C T      +C GHFG+IEL IP Y+P
Sbjct:    64 RCATCSLDFIECPGHFGHIELAIPCYNP 91

 Score = 87 (35.7 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query:   677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
             G +   F  G+ P +   H ++ RE ++ ++   S  G L + L+  L  + + YD TVR
Sbjct:   943 GFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVR 1002

Query:   737 NVCSNSIIQFDY 748
                  S+IQF+Y
Sbjct:  1003 E-SDGSVIQFNY 1013

 Score = 80 (33.2 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
 Identities = 38/128 (29%), Positives = 60/128 (46%)

Query:   954 KLSGVLANMIYPVLLETIIKENWWVRQRLSASVTMV--AKGVL--KEHLILLANSMTCAG 1009
             K+  +  N IY +L +  ++     RQ +++ ++ V  A G+   K HLILL       G
Sbjct:  1491 KIDEIYTNDIYAILQKYGVEA---CRQAVTSEISNVFAAYGISVDKRHLILL-------G 1540

Query:  1010 DLVGFNSGGYKALSRS--LNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGK 1067
             D + F  GGY+AL+R    N   PF + +         KA+     D ++S  +    G+
Sbjct:  1541 DYMTFE-GGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQ 1599

Query:  1068 HVAVGTGS 1075
              V  GTGS
Sbjct:  1600 IVKNGTGS 1607

 Score = 49 (22.3 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query:   755 SHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
             S S+   GE VG+L A ++  P+ +  L++
Sbjct:  1130 SRSMVSPGESVGLLCAQSIGEPSTQMTLNT 1159

 Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query:   495 YLIKKSEVLKGDFDRDTIPS---VINEIV 520
             +L K S  L GD+D  T PS   V+ +IV
Sbjct:  1575 FLSKAS--LMGDYDTVTSPSSRIVLGQIV 1601


>UNIPROTKB|F1LQN7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
            Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
        Length = 1011

 Score = 146 (56.5 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
 Identities = 43/162 (26%), Positives = 83/162 (51%)

Query:   334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
             +VV R + +GD + +NR PT H+ S+QA   ++  ++  ++++   C   +ADFDGD ++
Sbjct:   564 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 623

Query:   393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
               +PQS   +AE   L   ++Q L   +G     L  D ++S     ++  F  ++ +++
Sbjct:   624 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 683

Query:   446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
                +  T ++    L P   PA+ K      WT  Q++ ++L
Sbjct:   684 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 720

 Score = 97 (39.2 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query:   244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
             LEK   LF +   G    +++RSVI  D Y   NEIG+P   A ++T+ + V   N+  L
Sbjct:   449 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 508

Query:   300 QELVDN 305
             ++ V N
Sbjct:   509 RQAVIN 514

 Score = 82 (33.9 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
 Identities = 25/77 (32%), Positives = 37/77 (48%)

Query:    28 CTASISDCSIS---HASQLANPFL-GL-PLEFGKCES---CGT--SEPGKCEGHFGYIEL 77
             C   +S  SI+   +   L NP   GL  L  G  +S   C T   +   C GH G+I+L
Sbjct:    45 CIRKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDL 104

Query:    78 PIPIYHPSHISELKLTM 94
             P+ +Y+P    +L L +
Sbjct:   105 PLTVYNPLLFDKLYLLL 121

 Score = 44 (20.5 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query:    17 IRFGLATQKEICTASISD---CSISHASQLANPFLGL-PLEFGK 56
             +  G A  KE+C+  + D   CS  H   +  P     PL F K
Sbjct:    74 LALGPADSKEVCSTCVQDFNNCS-GHLGHIDLPLTVYNPLLFDK 116

 Score = 40 (19.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query:   137 YFPQDGYILEYLPVPPNCLSVPDI 160
             Y    GY+  YL VP N +  P I
Sbjct:    23 YHASLGYMAGYLTVPSNKVIKPCI 46


>UNIPROTKB|P0A8T7 [details] [associations]
            symbol:rpoC "RNA polymerase, beta' subunit" species:83333
            "Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
            Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
            GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
            EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
            EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
            PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
            SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
            PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
            EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
            EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
            GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
            PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
            BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
            BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
            Genevestigator:P0A8T7 Uniprot:P0A8T7
        Length = 1407

 Score = 170 (64.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 92/365 (25%), Positives = 155/365 (42%)

Query:    89 ELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEET-RKKLAGK----GYFPQDG- 142
             + K+   A Q  +K+  + Q     C +++E L     ET RKKL  +      F Q G 
Sbjct:   177 DAKMGAEAIQALLKSMDLEQE----CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN 232

Query:   143 ----YILEYLPV-PPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
                  IL  LPV PP+   +  + DG    +SDL+    + + +   + R      P+  
Sbjct:   233 KPEWMILTVLPVLPPDLRPLVPL-DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291

Query:   198 SQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIR 253
              +  E   LQ AV   L+     +  R +    G ++ P  +    ++    + R   + 
Sbjct:   292 VRN-EKRMLQEAVDALLD---NGRRGRAIT---GSNKRPLKSLADMIKGKQGRFRQNLLG 344

Query:   254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
             K   +S RSVIT   Y R+++ G+P ++A  + F+  +      Y  +L    L  T   
Sbjct:   345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-GKLELRGLATTIKA 396

Query:   314 GSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
                    RE +     L   +V+         V +NR PT H+  +QA    + +   ++
Sbjct:   397 AKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448

Query:   374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
             ++PL+C   +ADFDGD + +  P +L A+ E   L      +LS  NG   +  + D +L
Sbjct:   449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508

Query:   434 SLKVM 438
              L  M
Sbjct:   509 GLYYM 513

 Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query:   724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
             +R VV C D T   VC++      Y  +  + H +   GE +GV+AA ++  P
Sbjct:   882 VRSVVSC-D-TDFGVCAHC-----YGRDLARGH-IINKGEAIGVIAAQSIGEP 926

 Score = 45 (20.9 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD--GTVRNVCS 740
             F  GL+  +    +   R+ +  ++   +  G L + L+ V +D+V+  D  GT   +  
Sbjct:   763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822

Query:   741 NSIIQ 745
               +I+
Sbjct:   823 TPVIE 827

 Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query:   686 GLDPYEEM 693
             G DPYEEM
Sbjct:  1182 GSDPYEEM 1189

 Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query:   851 EFLIEYKKPEIISDDEGLVGHI 872
             + +I  KK EIIS+ E  V  I
Sbjct:   643 DMVIPEKKHEIISEAEAEVAEI 664

 Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   555 SLEDFSLSKAALWNI 569
             SL+D ++ +A LW I
Sbjct:   568 SLKDTTVGRAILWMI 582

 Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query:   571 KEIQALYSLLYHRMSTQNELVDLQIENHIRHVK-MLVAKFILKSSTLGYLI 620
             KE + LY      +++ +  V ++I  + +     LVAK  LK +T+G  I
Sbjct:   531 KEAERLYR---SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578


>TIGR_CMR|SO_0225 [details] [associations]
            symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
            SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
            PATRIC:23520143 Uniprot:Q8EK73
        Length = 1405

 Score = 155 (59.6 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
 Identities = 100/471 (21%), Positives = 195/471 (41%)

Query:   116 EVKEMLKRIPEETRKKLAGKGY-----FPQDG-----YILEYLPV-PPNCLSVPDISDGV 164
             +++E L  I  ETR+K   K       F   G      IL+ LPV PP+   +  + DG 
Sbjct:   200 QMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILKVLPVLPPDLRPLVPL-DGG 258

Query:   165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSR 224
                +SDL+    + + +   + R      P+   +  E   LQ +V   L+     +  R
Sbjct:   259 RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN-EKRMLQESVDALLD---NGRRGR 314

Query:   225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
              +    G ++ P  +    ++    + R   + K   +S RSVIT     R+++ G+P +
Sbjct:   315 AIT---GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKK 371

Query:   281 IAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRI 340
             +A  + F+  +      Y  +L    L  T          RE ++    L   +V+    
Sbjct:   372 MALEL-FKPFI------Y-GKLEGRGLATTIKAAKKMVE-REVAEVWDVL--DEVIREH- 419

Query:   341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
                  V +NR PT H+  +QA    + +   ++++PL+C   +ADFDGD + +  P +L 
Sbjct:   420 ----PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475

Query:   401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPL 460
             A+ E   L      +LS  NG   +  + D +L L    ++    +   + +   +++ +
Sbjct:   476 AQLEARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRG--EGMYFMSVAEV 533

Query:   461 PRP-ALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKK-------SEVLKGDFDRDTI 512
              +  A   A   AR   ++I ++++    +    R ++         S++L      D +
Sbjct:   534 EKAYATGAAELHAR-VKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLV 592

Query:   513 -----PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
                     I++++ + + + G ++ + F D L           G SV ++D
Sbjct:   593 NQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDD 643

 Score = 47 (21.6 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query:   723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
             ++R V+ C D T   VC+       Y  +  + H +   GE +GV+AA ++  P
Sbjct:   881 IVRSVITC-D-TDFGVCAAC-----YGRDLARGH-IINHGEAIGVVAAQSIGEP 926

 Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query:    57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
             CE CG   ++        G+IEL  P+ H
Sbjct:    85 CEKCGVEVTQTKVRRERMGHIELASPVAH 113

 Score = 42 (19.8 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD--GTVRNVCS 740
             F  GL+  +    +   R+ +  ++   +  G L + L+ V +D+V+  D  GT   +  
Sbjct:   763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTM 822

Query:   741 NSIIQ 745
               +I+
Sbjct:   823 KPLIE 827


>UNIPROTKB|P0C504 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
            Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
            Uniprot:P0C504
        Length = 682

 Score = 148 (57.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 49/193 (25%), Positives = 91/193 (47%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI       +++ G+P EIA        + +  +  +++L+  
Sbjct:   366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             +     +  +   + R+  +    +   +++ + +M G  V +NR PT H+  +QA    
Sbjct:   418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +  T+ ++PL+C   +ADFDGD + +  P SL A+AE   L      LLS   G+   
Sbjct:   470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529

Query:   426 QLATDALLSLKVM 438
                 D L+ L V+
Sbjct:   530 VPTQDMLIGLYVL 542

 Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query:    57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
             C+ CG      +   +  GYI+L  P+ H  ++  L
Sbjct:    87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122


>UNIPROTKB|P0C505 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
            HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
            GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
        Length = 682

 Score = 148 (57.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 49/193 (25%), Positives = 91/193 (47%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI       +++ G+P EIA        + +  +  +++L+  
Sbjct:   366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             +     +  +   + R+  +    +   +++ + +M G  V +NR PT H+  +QA    
Sbjct:   418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +  T+ ++PL+C   +ADFDGD + +  P SL A+AE   L      LLS   G+   
Sbjct:   470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529

Query:   426 QLATDALLSLKVM 438
                 D L+ L V+
Sbjct:   530 VPTQDMLIGLYVL 542

 Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query:    57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
             C+ CG      +   +  GYI+L  P+ H  ++  L
Sbjct:    87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122


>UNIPROTKB|P0C506 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
            GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
            PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
            STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
            KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
            Uniprot:P0C506
        Length = 682

 Score = 148 (57.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 49/193 (25%), Positives = 91/193 (47%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI       +++ G+P EIA        + +  +  +++L+  
Sbjct:   366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             +     +  +   + R+  +    +   +++ + +M G  V +NR PT H+  +QA    
Sbjct:   418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +  T+ ++PL+C   +ADFDGD + +  P SL A+AE   L      LLS   G+   
Sbjct:   470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529

Query:   426 QLATDALLSLKVM 438
                 D L+ L V+
Sbjct:   530 VPTQDMLIGLYVL 542

 Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query:    57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
             C+ CG      +   +  GYI+L  P+ H  ++  L
Sbjct:    87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122


>UNIPROTKB|Q6ENI3 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
            GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
            GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
            Uniprot:Q6ENI3
        Length = 682

 Score = 148 (57.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 49/193 (25%), Positives = 91/193 (47%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI       +++ G+P EIA        + +  +  +++L+  
Sbjct:   366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
             +     +  +   + R+  +    +   +++ + +M G  V +NR PT H+  +QA    
Sbjct:   418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +  T+ ++PL+C   +ADFDGD + +  P SL A+AE   L      LLS   G+   
Sbjct:   470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529

Query:   426 QLATDALLSLKVM 438
                 D L+ L V+
Sbjct:   530 VPTQDMLIGLYVL 542

 Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query:    57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
             C+ CG      +   +  GYI+L  P+ H  ++  L
Sbjct:    87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122


>TIGR_CMR|CJE_0529 [details] [associations]
            symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
            subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
            STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
            OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
        Length = 1517

 Score = 146 (56.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 66/279 (23%), Positives = 126/279 (45%)

Query:   340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD--CIHLFYPQ 397
             ++ G  V +NR PT HK S+QA    + +   ++++PL+C   +ADFDGD   +H+   Q
Sbjct:   437 VVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQ 496

Query:   398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL 457
                A+ +VL L S+   LL +   ++ +  + D +L +  +     L+KA  +       
Sbjct:   497 EAIAECKVLMLSSMNI-LLPASGKSVTVP-SQDMVLGIYYLS----LEKAGAKGSHKICT 550

Query:   458 SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKK---SEVLKGDFDRDTIPS 514
                      +++C     ++Q +  V      +   R +IK      V +  +++     
Sbjct:   551 GIDEVMMALESKCLDIHASIQTM--VDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKK 608

Query:   515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL---SKAALWNIQK 571
              I  +V  ++ + G E    F D L+ L  E     G S+S+ D  +    + A+   +K
Sbjct:   609 DIAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKK 668

Query:   572 ---EIQALYSL-LYHRMSTQNELVDL-QIENHIRHVKML 605
                EIQ  Y+L L       N+++D+ +  N++   +M+
Sbjct:   669 QVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKEMM 707

 Score = 138 (53.6 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
 Identities = 66/274 (24%), Positives = 115/274 (41%)

Query:   148 LPV-PPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDL 206
             LPV PP+   +  + DG     SD++    + + +   + +      P    +  E   L
Sbjct:   264 LPVLPPDLRPLVAL-DGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRN-EKRML 321

Query:   207 QLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITG 266
             Q AV    +    A + +  + R    +  +   K    + R   + K   FS RSVI  
Sbjct:   322 QEAVDALFDNGRRANAVKGANKR--PLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVV 379

Query:   267 DAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKG 326
                 R+++ G+P ++A  + F+  +       L +L +     T         + E    
Sbjct:   380 GPKLRMDQCGLPKKMALEL-FKPHL-------LAKLEEKGYATTVKQAKK---MIENKTN 428

Query:   327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
               +    +VV      G  V +NR PT HK S+QA    + +   ++++PL+C   +ADF
Sbjct:   429 EVWECLEEVVK-----GHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADF 483

Query:   387 DGD--CIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
             DGD   +H+   Q   A+ +VL L S+   L +S
Sbjct:   484 DGDQMAVHVPLSQEAIAECKVLMLSSMNILLPAS 517

 Score = 55 (24.4 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query:    56 KCESCGTSEPGKC--EGHFGYIELPIPIYHPSHISEL 90
             KCE CG             G+IEL  P+ H  +++ L
Sbjct:    85 KCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNSL 121

 Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query:   748 YAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
             Y +N  +   + P GE VG+++A ++  P  +  L
Sbjct:   897 YGINLGEGKLVKP-GEAVGIISAQSIGEPGTQLTL 930


>TIGR_CMR|ECH_0951 [details] [associations]
            symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
            subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
            STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
            PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
        Length = 1410

 Score = 142 (55.0 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
 Identities = 74/340 (21%), Positives = 142/340 (41%)

Query:   103 NDGVAQRLLSSCCEVKEMLKRIPEETR--KKLAGKGYFPQDGYILEYLPV-PPNCLSVPD 159
             N  +   L S+  E+K   K+I +  R  +     G  P+   IL  +P+ PP+   +  
Sbjct:   198 NANLRVELESTTSEMKR--KKIVKRLRIVENFINSGNKPE-WMILTVIPILPPDLRPLVS 254

Query:   160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
             + +G   +S DL+      + +   + +  +   P    +  E   LQ AV    +    
Sbjct:   255 LENGRPAVS-DLNHHYRTIINRNNRLGKLLKLNPPAIMIRN-EKRMLQEAVDALFDSTRR 312

Query:   220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
             +  S    +  G  +  +   K    + R   + K   +S RSVI      ++++ G+P 
Sbjct:   313 SYVSNKAGS-VGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPK 371

Query:   280 EIAQRITFE----ERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
             ++A  + F+     ++ ++ I    +L  NK+              +  K   +    +V
Sbjct:   372 KMALEL-FKPFICSKLKMYGIVPTVKLA-NKMI-------------QNEKPEVWDILDEV 416

Query:   336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
             +H        + +NR PT H+  +QA    + +   ++++PL+C   +ADFDGD + +  
Sbjct:   417 IHEH-----PILLNRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHI 471

Query:   396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
             P SL A+ E   L      +LS  NG   +  + D +L +
Sbjct:   472 PLSLEAQLEARILMMSTNNILSPSNGKPIIVPSKDIVLGI 511

 Score = 54 (24.1 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
 Identities = 21/101 (20%), Positives = 44/101 (43%)

Query:   516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
             I  IV  ++   G  E +EF D L  L  +     G S   +D  +      ++    + 
Sbjct:   606 ITSIVDLVYRSCGQSETVEFSDKLMSLGFKYASQSGISFGCKDMIIPDTKTMHVDNASEK 665

Query:   576 L--YSLLYHR-MSTQNELVDLQIENHIRHVKMLVAKFILKS 613
             +  +++ Y   + T++E  +  I+   +    L+AK ++K+
Sbjct:   666 IKEFAVQYQDGLITRSERYNKVIDEWSKCTD-LIAKDMMKA 705

 Score = 48 (22.0 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD-VVICYDGTVRN 737
             F  GL+ +E    +   R+ +  ++   +  G L + L+ V +D +V+ YD    N
Sbjct:   759 FREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHN 814

 Score = 42 (19.8 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query:   762 GEPVGVLAATAMSNP 776
             GE VGV+AA ++  P
Sbjct:   908 GEAVGVIAAQSVGEP 922


>TIGR_CMR|CHY_2317 [details] [associations]
            symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
            subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
            ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
            RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
            STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
            PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
        Length = 1152

 Score = 136 (52.9 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
 Identities = 49/177 (27%), Positives = 89/177 (50%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI      ++++ G+P E+A  + F+  V       +++LV  
Sbjct:   326 RFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKEMALEL-FKPFV-------MKKLV-- 375

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQV--VHRRIMDGDTVFINRPPTTHKHSLQALS 363
                   +DG + ++++   +    ++P +V  V   ++    V +NR PT H+  +QA  
Sbjct:   376 ------ADGIA-HNIKSAKRMVERVKP-EVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFE 427

Query:   364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
               + +   ++I+PL+C   +ADFDGD + +  P S  A+AE   L      +LSSHN
Sbjct:   428 PVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLL------MLSSHN 478

 Score = 63 (27.2 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
 Identities = 52/225 (23%), Positives = 93/225 (41%)

Query:   559 FSLSKA-ALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLG 617
             + ++K+ A  NIQ +I+ L  +          ++DL I+ + R    ++  FI   ST G
Sbjct:   688 YMMAKSGARGNIQ-QIRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFI---STHG 743

Query:   618 YLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLV--EDIASHFERIYPMDLNYPTAK 675
                               G+L  +L D        +V  ED  +  + IY  D+   T  
Sbjct:   744 ---ARKGLADTALRTADSGYLTRRLVD---VCQDVIVREEDCGTE-DGIYVTDVKDGTDV 796

Query:   676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP---GTLFKNLMAV-LRDVVICY 731
                ++     G    E++ H   T E++V  ++ ++E      +  N+  V +R V+ C 
Sbjct:   797 IEKLEDRIL-GRVAAEDVVHP-ETGELLVAKNQEITEEIAEKIVSANIKKVKIRSVLTCR 854

Query:   732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
               T   VC+       Y  N   ++S+   GE VG++AA ++  P
Sbjct:   855 --TRHGVCTRC-----YGRNLA-TNSIVDIGEAVGIIAAQSIGEP 891

 Score = 53 (23.7 bits), Expect = 0.00056, Sum P(4) = 0.00056
 Identities = 56/236 (23%), Positives = 96/236 (40%)

Query:   543 LMENLFADGFSVSLEDFSLSKA-ALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRH 601
             L+E L A  F+     + ++K+ A  NIQ +I+ L  +          ++DL I+ + R 
Sbjct:   675 LVETLEASQFN---HVYMMAKSGARGNIQ-QIRQLAGMRGLMADPSGRIIDLPIKANFRE 730

Query:   602 VKMLVAKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLV--EDIAS 659
                ++  FI   ST G                  G+L  +L D        +V  ED  +
Sbjct:   731 GLTVLEYFI---STHG---ARKGLADTALRTADSGYLTRRLVD---VCQDVIVREEDCGT 781

Query:   660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP---GTL 716
               + IY  D+   T     ++     G    E++ H   T E++V  ++ ++E      +
Sbjct:   782 E-DGIYVTDVKDGTDVIEKLEDRIL-GRVAAEDVVHP-ETGELLVAKNQEITEEIAEKIV 838

Query:   717 FKNLMAV-LRDVVICYD--GTV-----RNVCSNSIIQFDYAVNARKSHSLFPAGEP 764
               N+  V +R V+ C    G       RN+ +NSI+    AV    + S+   GEP
Sbjct:   839 SANIKKVKIRSVLTCRTRHGVCTRCYGRNLATNSIVDIGEAVGIIAAQSI---GEP 891

 Score = 42 (19.8 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query:    57 CESCG---TSEPGKCEGHFGYIELPIPIYH 83
             C+ CG   T    + E   G+IEL  P+ H
Sbjct:    75 CDRCGVEVTRSKVRRE-RLGHIELAAPVSH 103

 Score = 40 (19.1 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query:   516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
             + +IVT  + + G E+     D L+ L        G ++ + D ++ K
Sbjct:   579 LGKIVTESYRKLGYEKTGYLLDGLKKLGFHYATKAGLTIGIVDITVPK 626


>UNIPROTKB|Q9KV29 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 148 (57.2 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 51/196 (26%), Positives = 90/196 (45%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVIT   Y R+++ G+P ++A  + F+  +      Y  +L   
Sbjct:   337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-SKLETR 388

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
              L  T          RE +     L   +V+         V +NR PT H+  +QA    
Sbjct:   389 GLATTIKAAKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPV 440

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +   ++++PL+C   +ADFDGD + +  P +L A+ E   L      +LS  +G+  +
Sbjct:   441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPII 500

Query:   426 QLATDALLSLKVMFKK 441
               + D +L L  M ++
Sbjct:   501 VPSQDVVLGLYYMTRE 516

 Score = 46 (21.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query:   748 YAVNARKSHSLFPAGEPVGVLAATAMSNP 776
             Y  +  + H L   GE VGV+AA ++  P
Sbjct:   899 YGRDLARGH-LVNQGEAVGVIAAQSIGEP 926

 Score = 46 (21.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query:    57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
             CE CG   ++        G+IEL  P+ H
Sbjct:    85 CEKCGVEVTQTKVRRDRMGHIELASPVAH 113

 Score = 44 (20.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC-YD-GTVRNV 738
             F  GL+  +    +   R+ +  ++   +  G L + L+ V +DVV+  +D GT+  V
Sbjct:   763 FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGV 820


>TIGR_CMR|VC_0329 [details] [associations]
            symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
            RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 148 (57.2 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 51/196 (26%), Positives = 90/196 (45%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVIT   Y R+++ G+P ++A  + F+  +      Y  +L   
Sbjct:   337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-SKLETR 388

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
              L  T          RE +     L   +V+         V +NR PT H+  +QA    
Sbjct:   389 GLATTIKAAKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPV 440

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +   ++++PL+C   +ADFDGD + +  P +L A+ E   L      +LS  +G+  +
Sbjct:   441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPII 500

Query:   426 QLATDALLSLKVMFKK 441
               + D +L L  M ++
Sbjct:   501 VPSQDVVLGLYYMTRE 516

 Score = 46 (21.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query:   748 YAVNARKSHSLFPAGEPVGVLAATAMSNP 776
             Y  +  + H L   GE VGV+AA ++  P
Sbjct:   899 YGRDLARGH-LVNQGEAVGVIAAQSIGEP 926

 Score = 46 (21.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query:    57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
             CE CG   ++        G+IEL  P+ H
Sbjct:    85 CEKCGVEVTQTKVRRDRMGHIELASPVAH 113

 Score = 44 (20.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query:   683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC-YD-GTVRNV 738
             F  GL+  +    +   R+ +  ++   +  G L + L+ V +DVV+  +D GT+  V
Sbjct:   763 FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGV 820


>TIGR_CMR|NSE_0677 [details] [associations]
            symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
            subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
            GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
            RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
            STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
            PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
        Length = 1375

 Score = 153 (58.9 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 80/326 (24%), Positives = 142/326 (43%)

Query:   116 EVKEMLKRIPEETR--KKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
             EVK+  K+I +  R  ++  G    P D  IL+ +PV P  L    + DG    +SDL+ 
Sbjct:   212 EVKK--KKIIKTLRLVEQFLGSDSRPVD-MILDVIPVMPPDLRPLVMLDGGRFATSDLN- 267

Query:   174 AMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGV 232
             A+ + V+ +   ++S      PN      E   LQ AV    +    AK  +  + R   
Sbjct:   268 ALYRSVINRNNRLKSLIYLKAPNIIINN-ERRMLQEAVDALFDNGRRAKVIKGSNKR--P 324

Query:   233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
              +  +   K    + R   + K   +S RSVI       +++ G+P +IA          
Sbjct:   325 YKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALELHQCGLPKKIA---------- 374

Query:   293 VHNINYLQELVDNKLCLTYSDGSSSYSLR---EGSKGHTFLRPGQVVHRRIMDGDTVFIN 349
                +   +  + +KL L Y    +  + R   +  +   +    +V+H+       VF+N
Sbjct:   375 ---LELFKPFIYSKLEL-YGIAPTIKTARRMVQNEQPEVWDVLAKVIHQH-----PVFLN 425

Query:   350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
             R PT H+ S+QA    + +   ++++PL+C   +ADFDGD + +  P S+ A+ E   L 
Sbjct:   426 RAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVEARLLV 485

Query:   410 SVEKQLLSSHNGNLNLQLATDALLSL 435
                  +L+  N    +  + D +L +
Sbjct:   486 MSTNNVLNPANSRPIIVPSKDIVLGV 511

 Score = 49 (22.3 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query:    57 CESCG---TSEPGKCEGHFGYIELPIPIYHPSHISELKLTM-YAFQLQIKN 103
             CE CG   TS   + E   G+IEL  P+ H   +  L   +     L +KN
Sbjct:    85 CERCGVEVTSSRVRRE-RMGHIELASPVAHIWFLKSLPSKICILLDLTLKN 134

 Score = 44 (20.5 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query:   755 SHSLFPAGEPVGVLAATAMSNP 776
             +  L   GE VGV+AA ++  P
Sbjct:   888 NRKLVALGEAVGVIAAQSVGEP 909

 Score = 37 (18.1 bits), Expect = 7.3e-05, Sum P(4) = 7.3e-05
 Identities = 20/106 (18%), Positives = 46/106 (43%)

Query:   516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
             I+ +V  ++   G  + +EF D +  L        G S   +D  +      ++++  + 
Sbjct:   593 ISNLVDLVYKTCGHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPPTKSEHVRRANEE 652

Query:   576 L--YSLLYHR-MSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGY 618
             +  Y   Y   + T++E  + ++ +  +    LVAK ++   + GY
Sbjct:   653 VKEYEFQYQEGLITKHEKYN-KVVDAWQKCTDLVAKDMMDGIS-GY 696


>TIGR_CMR|SPO_3507 [details] [associations]
            symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
            subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
            SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
            PATRIC:23380483 Uniprot:Q5LMQ6
        Length = 1413

 Score = 147 (56.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
 Identities = 84/347 (24%), Positives = 145/347 (41%)

Query:   100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG-----YILEYLPV-PPN 153
             QI  +  A++L +   E    LK  P++  K+L     F + G      +L  +PV PP 
Sbjct:   194 QIDLEAEAEQLRADLAEATGELK--PKKIIKRLKVVESFLESGNRPEWMVLTVIPVIPPE 251

Query:   154 CLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQY 213
                +  + DG    +SDL+    + + +   + R      P+   +  E   LQ +V   
Sbjct:   252 LRPLVPL-DGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRN-EKRMLQESVDAL 309

Query:   214 LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVI-TGDA 268
              +     +  R +    G ++ P  +    L+    + R   + K   FS RSVI TG  
Sbjct:   310 FD---NGRRGRVIT---GANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPE 363

Query:   269 YKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHT 328
              K +++ G+P ++A  + F+  +      Y   L    L  T         L E  +   
Sbjct:   364 LK-LHQCGLPKKMALEL-FKPFI------Y-SRLEAKGLSSTVKQAKK---LVEKERPEV 411

Query:   329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
             +    +V+         V +NR PT H+  +QA    + +   ++++PL+C   +ADFDG
Sbjct:   412 WDILDEVIREH-----PVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDG 466

Query:   389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
             D + +  P SL A+ E   L      +LS  NG   +  + D +L L
Sbjct:   467 DQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGL 513

 Score = 47 (21.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query:    57 CESCG---TSEPGKCEGHFGYIELPIPIYH 83
             CE CG   T +  + E   G+IEL  P+ H
Sbjct:    87 CEKCGVEVTLQKVRRE-RMGHIELAAPVAH 115

 Score = 41 (19.5 bits), Expect = 0.00040, Sum P(4) = 0.00040
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   762 GEPVGVLAATAMSNP 776
             GE VG++AA ++  P
Sbjct:   909 GEAVGIIAAQSIGEP 923

 Score = 41 (19.5 bits), Expect = 0.00040, Sum P(4) = 0.00040
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query:   491 CG-DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
             CG DR +  ++ V  G+        V+  +        G EEVL
Sbjct:   811 CGTDRGVTAEAAVNDGEVVASLAERVLGRVAADDILRPGTEEVL 854

 Score = 40 (19.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query:   826 KYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE-GLV 869
             +YC ++ + +  +Q+  +  ++A    +   K   +I DD+ G+V
Sbjct:   611 RYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDDKWGIV 655


>TIGR_CMR|APH_1023 [details] [associations]
            symbol:APH_1023 "DNA-directed RNA polymerase, beta'
            subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
            STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
            PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
            ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
            TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
        Length = 1409

 Score = 140 (54.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 66/286 (23%), Positives = 125/286 (43%)

Query:   346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
             + +NR PT H+  LQA    + +   ++++PL+C   +ADFDGD + +  P S  A+ E 
Sbjct:   422 ILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLEA 481

Query:   406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPAL 465
               L      +LS  NG   +  + D +L   + +     +    +++  FA       AL
Sbjct:   482 RVLMMSTNNILSPSNGRPIIVPSKDIVLG--IYYLTLLEEDPEVREVQTFAEFSHVEYAL 539

Query:   466 SKA---RCSARWTALQILQS---VLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSV---- 515
              +     CS     +Q   +   V     ++   R ++ +      D   D I  V    
Sbjct:   540 HEGIVHTCSRIKYRMQKSAADGTVSSEIVETTPGRLILWQIFPQHKDLTFDLINQVLTVK 599

Query:   516 -INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL--SKAA-LWNIQK 571
              I  IV  ++   G  E +EF D L  L  +     G S   +D  +  +KAA + +  +
Sbjct:   600 EITSIVDLVYRSCGQRETVEFSDKLMYLGFKYASQSGISFGCKDMIIPDTKAAHVEDASE 659

Query:   572 EIQALYSLLYHR-MSTQNELVDLQIENHIRHVKMLVAKFILKSSTL 616
             +I+  +S+ Y   + T++E  +  ++   +    L+A+ ++K+ +L
Sbjct:   660 KIRE-FSIQYQDGLITKSERYNKVVDEWSKCTD-LIARDMMKAISL 703

 Score = 139 (54.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 86/360 (23%), Positives = 155/360 (43%)

Query:    87 ISEL--KLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETR--KKLAGKGYFPQDG 142
             I EL  +L + A +  ++N+     L S+  E+K   K++ +  R  +     G  P+  
Sbjct:   185 IKELLTRLDLEAIRATLRNE-----LESTSSEMKR--KKVVKRLRLVENFIKSGNRPE-W 236

Query:   143 YILEYLPV-PPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
              IL  +PV PP+   +  + +G   +S DL+      + +   + +  +   P    +  
Sbjct:   237 MILTVIPVLPPDLRPLVSLENGRPAVS-DLNHHYRTIINRNNRLEKLLKLNPPAIMIRN- 294

Query:   202 ESNDLQLAVGQYLEV-RGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
             E   LQ AV    +  R +  SSR V +  G  +  +   K    + R   + K   +S 
Sbjct:   295 EKRMLQEAVDALFDSSRRSYVSSR-VGS-MGYKKSLSDMLKGKQGRFRQNLLGKRVDYSG 352

Query:   261 RSVITGDAYKRVNEIGVPFEIAQRITFE----ERVNVHNINYLQELVDNKLCLTYSDGSS 316
             RSVI      ++++ G+P ++A  + F+     ++ ++ I    +L  NK+    S+   
Sbjct:   353 RSVIVVGPSLKLHQCGLPKKMALEL-FKPFICSKLKMYGIAPTVKLA-NKMI--QSEKPD 408

Query:   317 SYS-LREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKIN 375
              +  L E  K H  L                 +NR PT H+  LQA    + +   ++++
Sbjct:   409 VWDVLDEVIKEHPIL-----------------LNRAPTLHRLGLQAFDPVLIEGKAIQLH 451

Query:   376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
             PL+C   +ADFDGD + +  P S  A+ E   L      +LS  NG   +  + D +L +
Sbjct:   452 PLVCSAFNADFDGDQMAVHVPLSQEAQLEARVLMMSTNNILSPSNGRPIIVPSKDIVLGI 511

 Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query:   758 LFPAGEPVGVLAATAMSNP 776
             L   GE VGV+AA ++  P
Sbjct:   899 LVSIGEAVGVIAAQSVGEP 917


>UNIPROTKB|P37871 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
            GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
            RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
            DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
            EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
            PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
            Uniprot:P37871
        Length = 1199

 Score = 140 (54.3 bits), Expect = 0.00052, Sum P(4) = 0.00051
 Identities = 47/190 (24%), Positives = 93/190 (48%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI    + ++ + G+P E+A  + F+  V       ++ELV+ 
Sbjct:   326 RFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKEMALEL-FKPFV-------MKELVEK 377

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQV--VHRRIMDGDTVFINRPPTTHKHSLQALS 363
              L         +++++   +    ++P +V  V   ++    V +NR PT H+  +QA  
Sbjct:   378 GL---------AHNIKSAKRKIERVQP-EVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427

Query:   364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
               + +   ++++PL+C   +ADFDGD + +  P S  A+AE   L    + +L+  +G  
Sbjct:   428 PTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKP 487

Query:   424 NLQLATDALL 433
              +  + D +L
Sbjct:   488 VVTPSQDMVL 497

 Score = 50 (22.7 bits), Expect = 0.00052, Sum P(4) = 0.00051
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query:   679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
             IK  F  GL   E    +   R+ +  ++   ++ G L + L+ V +DV+I
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVII 813

 Score = 41 (19.5 bits), Expect = 0.00052, Sum P(4) = 0.00051
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   762 GEPVGVLAATAMSNP 776
             GE VG++AA ++  P
Sbjct:   916 GEAVGIIAAQSIGEP 930

 Score = 41 (19.5 bits), Expect = 0.00052, Sum P(4) = 0.00051
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query:    57 CESCGTSEP-GKCEGH-FGYIELPIPIYH 83
             C+ CG      K      G+IEL  P+ H
Sbjct:    75 CDRCGVEVTRAKVRRERMGHIELAAPVSH 103


>TIGR_CMR|BA_0103 [details] [associations]
            symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
            RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
            IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
            EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
            GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
            KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
            BioCyc:BANT260799:GJAJ-114-MONOMER
            BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
        Length = 1203

 Score = 135 (52.6 bits), Expect = 0.00055, Sum P(4) = 0.00055
 Identities = 47/190 (24%), Positives = 92/190 (48%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVI      ++ + G+P E+A  + F+  V       ++ELV+ 
Sbjct:   326 RFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALEL-FKPFV-------MKELVEK 377

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQV--VHRRIMDGDTVFINRPPTTHKHSLQALS 363
              L         +++++   +    ++P +V  V   ++    V +NR PT H+  +QA  
Sbjct:   378 GL---------AHNIKSAKRKIERVQP-EVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427

Query:   364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
               + +   ++++PL+C   +ADFDGD + +  P S  A+AE   L    + +L+  +G  
Sbjct:   428 PTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNILNPKDGKP 487

Query:   424 NLQLATDALL 433
              +  + D +L
Sbjct:   488 VVTPSQDMVL 497

 Score = 55 (24.4 bits), Expect = 0.00055, Sum P(4) = 0.00055
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query:   679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD--GTVR 736
             IK  F  GL   E    +   R+ +  ++   ++ G L + L+ V +DV++  D  GT R
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDR 822

Query:   737 NVCSNSI 743
              +   +I
Sbjct:   823 GLLIGAI 829

 Score = 41 (19.5 bits), Expect = 0.00055, Sum P(4) = 0.00055
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:   762 GEPVGVLAATAMSNP 776
             GE VG++AA ++  P
Sbjct:   916 GEAVGIIAAQSIGEP 930

 Score = 41 (19.5 bits), Expect = 0.00055, Sum P(4) = 0.00055
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query:    57 CESCGTSEP-GKCEGH-FGYIELPIPIYH 83
             C+ CG      K      G+IEL  P+ H
Sbjct:    75 CDRCGVEVTRAKVRRERMGHIELAAPVSH 103


>TIGR_CMR|CPS_4768 [details] [associations]
            symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
            subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
            SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
            KEGG:cps:CPS_4768 PATRIC:21472353
            BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
        Length = 1406

 Score = 135 (52.6 bits), Expect = 0.0010, Sum P(3) = 0.0010
 Identities = 48/190 (25%), Positives = 86/190 (45%)

Query:   246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
             + R   + K   +S RSVIT     ++++ G+P ++A  + F+  +      Y  +L   
Sbjct:   337 RFRQNLLGKRVDYSGRSVITVGPTLKLHQCGLPKKMALEL-FKPFI------Y-GKLEAR 388

Query:   306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
              L  T          REG++    L   +V+         V +NR PT H+  +QA    
Sbjct:   389 GLATTIKAAKKLVE-REGAEVWDVL--DEVIREH-----PVMLNRAPTLHRLGIQAFEPV 440

Query:   366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
             + +   + ++PL+C   +ADFDGD + +  P ++ A+ E   L      +L+  NG   +
Sbjct:   441 LIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEARTLMMSTNNVLAPANGEPII 500

Query:   426 QLATDALLSL 435
               + D +L L
Sbjct:   501 VPSQDVVLGL 510

 Score = 50 (22.7 bits), Expect = 0.0010, Sum P(3) = 0.0010
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query:   724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
             +R ++ C   T   +C+N      Y  +  + H +   GE +GV+AA ++  P
Sbjct:   882 VRSIITCK--TDFGICANC-----YGRDLARGH-MINQGEAIGVVAAQSIGEP 926

 Score = 43 (20.2 bits), Expect = 0.0010, Sum P(3) = 0.0010
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query:    57 CESCGTSEP-GKCE-GHFGYIELPIPIYH 83
             CE CG      K      G+IEL  P+ H
Sbjct:    85 CEKCGVEVTLTKVRRDRMGHIELASPVAH 113


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1238      1206   0.00097  123 3  11 22  0.40    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  75
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  566 KB (2256 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  106.40u 0.11s 106.51t   Elapsed:  00:00:07
  Total cpu time:  106.45u 0.11s 106.56t   Elapsed:  00:00:07
  Start:  Mon May 20 15:16:33 2013   End:  Mon May 20 15:16:40 2013

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