BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000882
(1238 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225465870|ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 1421 bits (3678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1045 (68%), Positives = 829/1045 (79%), Gaps = 76/1045 (7%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
MEE+ SSTIL+G+I GIRFGLAT++EIC AS+SDC ISHASQL NPFLGLPLEFGKCESC
Sbjct: 1 MEED-SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESC 59
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF--------QLQIKNDGVAQRLLS 112
GT+EPG+CEGHFGYIELPIPIYHP H+SELK + + ++ N+G+ ++LL+
Sbjct: 60 GTAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLLA 119
Query: 113 SCCE------VKEM-------------------------------------LKRI----- 124
CC+ V+E L RI
Sbjct: 120 PCCQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSE 179
Query: 125 --------PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
PE+TRKKL KGYFPQDGYIL+YLPVPPNCLSVPDISDGVS MSSDLS++ML
Sbjct: 180 VMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSML 239
Query: 177 KKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDP 236
KKVLKQ+E+I+ SRSG PNFES ++E+N+LQ ++ QYLEVRGTAK+SR +D RFG S++P
Sbjct: 240 KKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEP 299
Query: 237 N-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
N S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG+PFEIAQRITFEERVNVHN
Sbjct: 300 NESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHN 359
Query: 296 INYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ +LQ LVD KLCLTY DG S+YSLREGSKGHTFLRPGQVVHRRIMDGD VFINRPPTTH
Sbjct: 360 MKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQSL AKAEVLELFSVEKQL
Sbjct: 420 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQL 479
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR-W 474
LSSH+GNLNLQLATD+LLSLKV+F++YFL+KA QQL MF LPRPAL K+ CS W
Sbjct: 480 LSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCW 539
Query: 475 TALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
TALQILQ+ LP FD G+R+ I KS +LK D++RD + S++NEIVTSIF EKGP EVL+
Sbjct: 540 TALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLK 599
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ 594
FFDSLQPLLMENLF++GFSVSLEDFS+ NIQK ++ + SLLY+ S NEL+ LQ
Sbjct: 600 FFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQ 659
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
ENH+R K+ VA FIL SS LG LIDSKSDSA++KVVQQ GFLG QLS++GKFYS+TLV
Sbjct: 660 AENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLV 719
Query: 655 EDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
E +A F+ YP +YP+ ++GLI+ CFFHGLDPYEEM HSISTRE+IVRSSRGLSEP
Sbjct: 720 EGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEP 779
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATA 772
GTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y V AR K FPAGEPVGVLAATA
Sbjct: 780 GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATA 839
Query: 773 MSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERA 832
MSNPAYKAVLDSSPSSN+SWELMKEILLC+V+F ND IDRRVILYLNDC CGRKYC+E A
Sbjct: 840 MSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENA 899
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE----GLVGHIHLNKILLEDLRISMHD 888
AY+VKNQLK+ SLKD AVEF+IEY K +S GLVGHIHLNK+LL+DL +SM +
Sbjct: 900 AYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQE 959
Query: 889 ILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGAS 948
+ KC+ET+ SF KK K V FFK LS ECC+FQ SC K S+MPCL+F +G
Sbjct: 960 VCQKCEETINSFRKK---KNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNR 1016
Query: 949 DSYLDKLSGVLANMIYPVLLETIIK 973
D L+++ +LA+ I PVLL+TIIK
Sbjct: 1017 DDNLEQILHILAHKICPVLLQTIIK 1041
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 178/284 (62%), Gaps = 45/284 (15%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SVTMVAKGVLKEHLILLANSMTCAG+L+GFNSGGYKALSR+LN+QVPFTEATLF
Sbjct: 1133 QRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFT 1192
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKA+EK HTD+LSS+VA+CSWGKHV VGTGSRFD+LW T+ QD G+D+Y F
Sbjct: 1193 PRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSF 1252
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDG--LEDE-FDWSLSPEHNLCSDKPVFEDLVEDQSWLE 1156
LH+VRS + +E DT CLG EV+ LEDE + +SPEH+ +KPVFED E Q+ E
Sbjct: 1253 LHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWE 1312
Query: 1157 NKQE--------NANWDSEADCRKSSEDKWEKLGT---------SLEKP-----SSGWRT 1194
N N N ++ A K S W GT S +P S+GW
Sbjct: 1313 NHVPGSGGDWAVNQNKETTASTLKPS--AWSSWGTDKVTMKDTFSTREPDESSRSAGWDD 1370
Query: 1195 EGAWG------------------KSSDDKLEKAGSPSRKPSGWG 1220
+G WG S D+ + G P S WG
Sbjct: 1371 KGTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWG 1414
>gi|449479984|ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 1390 bits (3598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1060 (66%), Positives = 836/1060 (78%), Gaps = 80/1060 (7%)
Query: 1 MEENTS-STILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE S S+IL+ +IVGIRF LA +EIC A+ISDC I+HASQL+NPFLGLP+EFGKCES
Sbjct: 1 MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK------LTMYAFQLQIKNDGVAQRLLSS 113
CGTSEPGKCEGHFGYIELPIPIYHP+HI+ELK + KN G A+RLLSS
Sbjct: 61 CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKNIGFAERLLSS 120
Query: 114 CCE------VKEMLK---------RIP--------------------------------- 125
CCE ++E K ++P
Sbjct: 121 CCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEV 180
Query: 126 --------EETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
ETRKKLAG+GY+PQDGYIL+YLPVPPNCLSVP+ISDGV+ MSSD +++MLK
Sbjct: 181 KEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLK 240
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
K+LKQVEII+ SRSG PNFES EVE+NDLQLAV QYL+VRGT K+SR +DARFGV+++ N
Sbjct: 241 KILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELN 300
Query: 238 S-TTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYK VNEIGVPFE+AQRITFEERV+VHNI
Sbjct: 301 DPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNI 360
Query: 297 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 356
YLQELVD KLCLTY DGSS+YSLREGS GHT+L+PGQ+VHRRIMDGD VFINRPPTTHK
Sbjct: 361 RYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHK 420
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
HSLQAL VY+HDDH VKINPLICGPLSADFDGDCIHLFYPQS+AAKAEVL LFSVEKQLL
Sbjct: 421 HSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLL 480
Query: 417 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC-SARWT 475
SSH+GNLNLQLA D+LLSLK+MF+KYFL KA QQLAMF S LP PAL R S WT
Sbjct: 481 SSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWT 540
Query: 476 ALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
ALQILQ+VLP FD GD YLIK S LK DFDRD +PS+INEI+TSIFF+KGPEEVL+F
Sbjct: 541 ALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKF 600
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQI 595
FDSLQPLLME++F++GFSV L+D+S+ A L +QK IQ L LLY ST NELV+LQ+
Sbjct: 601 FDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQL 660
Query: 596 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
ENH+R VK+ FILK S+LG L DSKS+SA++KVVQQ GFLGLQLSD+G+FYSK+L+E
Sbjct: 661 ENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIE 720
Query: 656 DIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
D+AS F Y D ++YP+A++GL+KGCFFHGLDPYEEM HSISTREV+VRSSRGL+EPG
Sbjct: 721 DVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPG 780
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA--RKSHSLFPAGEPVGVLAATA 772
TLFKNLMA+LRDVVICYDGTVRNVCSNSIIQ +Y + A + +SLFP GEPVGVLAATA
Sbjct: 781 TLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATA 840
Query: 773 MSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERA 832
MS PAYKAVLDS+PSSN+SW++MKEILLC+VSF N+PIDRRVILYLN+C CGRKYC E A
Sbjct: 841 MSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENA 900
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEY-KKPEIISDDEGLVGHIHLNKILLEDLRISMHDILP 891
AY+VK+ LK+V+LKDAA++F+IEY ++P GLVGH+HLN++LL++L I M ++L
Sbjct: 901 AYVVKSHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRMLLKELNIDMTEVLR 960
Query: 892 KCQETLKSF-CKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDS 950
+CQET+ SF KKKK+ ++F SISE C+F Q ++ +MPCL+F D
Sbjct: 961 RCQETMSSFKKKKKKIAHALRF------SISEHCAFHQWNGEESIDMPCLIF-WHQTRDV 1013
Query: 951 YLDKLSGVLANMIYPVLLETIIKENWWVRQRLSASVTMVA 990
+L++ + +LA++++P+L ETIIK + ++ SASV ++
Sbjct: 1014 HLERTAHILADIVFPLLSETIIKGDPRIK---SASVIWIS 1050
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 171/258 (66%), Gaps = 7/258 (2%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SV+MV+KGVL +HLILLANSMTC G+++GFNSGGYKALSR+LN+QVPFTEATLF
Sbjct: 1128 QRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFT 1187
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKAAEK H D+LSS+VA+CSWGKHVAVGTGSRFD+LW + QDD VDVY+F
Sbjct: 1188 PRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNF 1247
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGL--EDEF-DWSLSPEHNLCSDKPVFEDLVEDQSWLE 1156
LHMVRS EE + CLGEE++ + EDE+ + +LSPE S+KPVFED E + L+
Sbjct: 1248 LHMVRSGKS-EEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLD 1306
Query: 1157 NKQENANWDSEADCRKSSE--DKWEKLGTSLEKPSSGWRTEGAWGKSSD-DKLEKAGSPS 1213
N + W+ S +WE SS WG+ ++ D +
Sbjct: 1307 NYPGESKWEKAPSLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQEN 1366
Query: 1214 RKPSGWGTEASWGESSCD 1231
S W T +SWG + +
Sbjct: 1367 TSNSAWDTTSSWGNKATN 1384
>gi|449445170|ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 1372 bits (3552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1092 (64%), Positives = 838/1092 (76%), Gaps = 112/1092 (10%)
Query: 1 MEENTS-STILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE S S+IL+ +IVGIRF LA +EIC A+ISDC I+HASQL+NPFLGLP+EFGKCES
Sbjct: 1 MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60
Query: 60 CGTSEPGKCE--------------------------GHFGYIELPIPIYHPSHISELK-- 91
CGTSEPGKCE GHFGYIELPIPIYHP+HI+ELK
Sbjct: 61 CGTSEPGKCEGIDFFFXIFNVLHNTTXQVVFIFHLSGHFGYIELPIPIYHPNHITELKKM 120
Query: 92 --------LTMYAFQLQIKNDGVAQRLLSSCCE------VKEMLK---------RIP--- 125
L M + KN G A+RLLSSCCE ++E K ++P
Sbjct: 121 LSLLCLKCLKMKKTKFPSKNIGFAERLLSSCCEDASQVTIREAKKADGASYLQLKVPSRT 180
Query: 126 --------------------------------------EETRKKLAGKGYFPQDGYILEY 147
ETRKKLAG+GY+PQDGYIL+Y
Sbjct: 181 SLQERFWDFLERYGFRYGDNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGYILQY 240
Query: 148 LPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQ 207
LPVPPNCLSVP+ISDGV+ MSSD +++MLKK+LKQVEII+ SRSG PNFES EVE+NDLQ
Sbjct: 241 LPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQ 300
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNS-TTKAWLEKMRTLFIRKGSGFSSRSVITG 266
LAV QYL+VRGT K+SR +DARFGV+++ N +TKAWLEKMRTLFIRKGSGFSSRSVITG
Sbjct: 301 LAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITG 360
Query: 267 DAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKG 326
DAYK VNEIGVPFE+AQRITFEERV+VHNI YLQELVD KLCLTY DGSS+YSLREGS G
Sbjct: 361 DAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMG 420
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
HT+L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQAL VY+HDDH VKINPLICGPLSADF
Sbjct: 421 HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADF 480
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDK 446
DGDCIHLFYPQS+AAKAEVL LFSVEKQLLSSH+GNLNLQLA D+LLSLK+MF+KYFL K
Sbjct: 481 DGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGK 540
Query: 447 AFTQQLAMFALSPLPRPALSKARC-SARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG 505
A QQLAMF S LP PAL R S WTALQILQ+VLP FD GD YLIK S LK
Sbjct: 541 AAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKF 600
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
DFDRD +PS+INEI+TSIFF+KGPEEVL+FFDSLQPLLME++F++GFSV L+D+S+ A
Sbjct: 601 DFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAF 660
Query: 566 LWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSD 625
L +QK IQ L LLY ST NELV+LQ+ENH+R VK+ FILK S+LG L DSKS+
Sbjct: 661 LQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSE 720
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD-LNYPTAKYGLIKGCFF 684
SA++KVVQQ GFLGLQLSD+G+FYSK+L+ED+AS F Y D ++YP+A++GL+KGCFF
Sbjct: 721 SAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFF 780
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
HGLDPYEEM HSISTREV+VRSSRGL+EPGTLFKNLMA+LRDVVICYDGTVRNVCSNSII
Sbjct: 781 HGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSII 840
Query: 745 QFDYAVNA--RKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCR 802
Q +Y + A + +SLFP GEPVGVLAATAMS PAYKAVLDS+PSSN+SW++MKEILLC+
Sbjct: 841 QLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCK 900
Query: 803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEY-KKPEI 861
VSF N+PIDRRVILYLN+C CGRKYC E AAY+VK+ LK+V+LKDAA++F+IEY ++P
Sbjct: 901 VSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP 960
Query: 862 ISDDEGLVGHIHLNKI--LLEDLRISMHDILPKCQETLKSF-CKKKKMKKVVQFFKNTSL 918
GLVGH+HLN++ LL++L I M ++L +CQET+ SF KKKK+ ++F
Sbjct: 961 SGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKKKKIAHALRF------ 1014
Query: 919 SISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKENWWV 978
SISE C+F Q ++ +MPCL+F D +L++ + +LA++++P+L ETIIK + +
Sbjct: 1015 SISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHILADIVFPLLSETIIKGDPRI 1073
Query: 979 RQRLSASVTMVA 990
+ SASV ++
Sbjct: 1074 K---SASVIWIS 1082
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 172/286 (60%), Gaps = 35/286 (12%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SV+MV+KGVL +HLILLANSMTC G+++GFNSGGYKALSR+LN+QVPFTEATLF+
Sbjct: 1160 QRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFV 1219
Query: 1040 ----------------------------PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAV 1071
PRKCFEKAAEK H D+LSS+VA+CSWGKHVAV
Sbjct: 1220 SPFHSLVLSLYMKFNFFFLFFLNGXYTTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAV 1279
Query: 1072 GTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGL--EDEF- 1128
GTGSRFD+LW + QDD VDVY+FLHMVRS EE + CLGEE++ + EDE+
Sbjct: 1280 GTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSGKS-EEPTSACLGEEIEDIMVEDEYG 1338
Query: 1129 DWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSE--DKWEKLGTSLE 1186
+ +LSPE S+KPVFED E + L+N + W+ S +WE
Sbjct: 1339 ELTLSPEPFSTSEKPVFEDSAEFEHCLDNYPGESKWEKAPSLGAVSTGGGQWESNENGKA 1398
Query: 1187 KPSSGWRTEGAWGKSSD-DKLEKAGSPSRKPSGWGTEASWGESSCD 1231
SS WG+ ++ D + S W T +SWG + +
Sbjct: 1399 TNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSWGNKATN 1444
>gi|255543995|ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 991
Score = 1361 bits (3523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/974 (69%), Positives = 776/974 (79%), Gaps = 72/974 (7%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCG 61
+ENT S+ LEG++VGI+FGLAT KEI AS+SDC ISH+SQL NPFLGLPLEFGKCESCG
Sbjct: 4 KENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESCG 63
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHIS--------------------------------- 88
TSEPGKCEGHFGYIELPIPIYHPSH+S
Sbjct: 64 TSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAERLFSC 123
Query: 89 ----------ELKLTMYAFQLQIK----------------------NDGVAQRLLSSCCE 116
E+K T A+ LQ+K D + + LL CE
Sbjct: 124 CEEAAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLLP--CE 181
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
V EML+RIP++TRKKLA KGYFPQDGYI+ Y+PVPPNCLSVPDISDGVS MSSDLSI+ML
Sbjct: 182 VLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSISML 241
Query: 177 KKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDP 236
KKVLKQVEII+SSRSG PNFES EVE+ DLQ AV QYL+VRGTAKS+RDV RFGV ++
Sbjct: 242 KKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVHKES 301
Query: 237 N-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
N S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYK VNEIG+P EIAQRITFEERVN HN
Sbjct: 302 NDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVNAHN 361
Query: 296 INYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ YLQELVDNKLCLTY DGSS+YSLREGSKGHTFLR GQ+VHRRIMDGD VFINRPPTTH
Sbjct: 362 MQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPPTTH 421
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
KHSLQALSVYVHD HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL
Sbjct: 422 KHSLQALSVYVHDGHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 481
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMF-ALSPLPRPALSKARCSAR- 473
LSSH+GNLNLQL +D+LLSLK MF YFLD+A QQLAMF + S LP+PAL KA CS
Sbjct: 482 LSSHSGNLNLQLTSDSLLSLKTMFNTYFLDRAAAQQLAMFVSSSSLPQPALWKAHCSVPI 541
Query: 474 WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
WTALQILQ+ LP FD G+RYLI ++++K DF RD + +VIN+IV S+FFEKGP+ V
Sbjct: 542 WTALQILQTALPSQFDCSGERYLISNTDIVKVDFSRDVVQAVINDIVISMFFEKGPDAVF 601
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL 593
+FF+SLQPLLME+LF++GFSV LEDF +S+AA+ +++ + + SLL ST NEL+ L
Sbjct: 602 KFFNSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLRSTYNELMAL 661
Query: 594 QIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
Q+ENHIR K+ VA FI++ S++G LID KSDSA++KVVQQ GFLGLQ+SDRGKFY+KTL
Sbjct: 662 QLENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTL 721
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
VED+A HFE YP D++YP+AK+GLI+ CFFHGLDPYEEM HSIS REV+VRS+RGLSEP
Sbjct: 722 VEDMALHFESKYPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEP 781
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATA 772
GTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y + A K+ SLFPAGEPVGVLAATA
Sbjct: 782 GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVLAATA 841
Query: 773 MSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERA 832
MSNPAYKAVLDS+PSSN+SWELMKEIL CRV+F ND DRRVILY N CGCG+ YCQER
Sbjct: 842 MSNPAYKAVLDSTPSSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGKFYCQERL 901
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPK 892
AY VKN L++V LKD A+ F+ EYK I+ D GLVGH+HL K L++L +SM I K
Sbjct: 902 AYSVKNHLEKVILKDIALCFMCEYKSQPTIA-DAGLVGHVHLKKTKLQELNVSMEVIHRK 960
Query: 893 CQETLKSFCKKKKM 906
C ET+ SF KKKKM
Sbjct: 961 CSETISSFGKKKKM 974
>gi|224072881|ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 924
Score = 1306 bits (3380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/924 (70%), Positives = 739/924 (79%), Gaps = 69/924 (7%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
M+EN+ S+I +G+I GIRFGLATQKEICTASISDC ISH+SQL NPFLGLPLEFGKCESC
Sbjct: 1 MDENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQ-- 108
GTSEPGKCEGHFG+I LPIPIYHPSHISELK L + ++QIK++GVA+
Sbjct: 61 GTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERL 120
Query: 109 --------------------------------RLLSSC---------------------C 115
RL C C
Sbjct: 121 LSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLLPC 180
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
EV ++LKRIP ETRKKL+GKGYFPQDGYIL+ LPVPPNCLSVP +SDG++ MSSDLSI+M
Sbjct: 181 EVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISM 240
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
LKKVLKQ E+IRSSRSG PNF++ + E+ LQ V QYL+VRGT K+SRDVD R+GV ++
Sbjct: 241 LKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKE 300
Query: 236 PN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
+ STTKAWLEKMRTLFIRKGSGFSSRSVITGDAY VN++G+P+EIAQRITFEERV+VH
Sbjct: 301 SSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVH 360
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N+ YLQELVDNKLCLTY DGSS+YSLREGSKGHTFLRPGQVVHRRIMDGD VFINRPPTT
Sbjct: 361 NMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTT 420
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQALSVYVHDDH VKINPLICGPLSADFDGDC+HLFYPQSLAAKAEVLELFSVEKQ
Sbjct: 421 HKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQ 480
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC-SAR 473
LLSSH+GNLNLQL TD+LLSLK+MFK FL K+ QQLAMF LP+PAL K C
Sbjct: 481 LLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPH 540
Query: 474 WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
WTA QILQ LP F+ G+R+LI S LK DF+RD + SVINEI+ S+FFEKG VL
Sbjct: 541 WTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVL 600
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL 593
+FF+SLQP+LMENLF++GFSVSLEDFS+S+A I + +A+ LL + ST NELV+L
Sbjct: 601 KFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVEL 660
Query: 594 QIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
Q+ENHIR VK V +FIL SS LGYLIDSKSD+AV+KVVQQ GFLGLQ+SDRGK YSKTL
Sbjct: 661 QVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTL 720
Query: 654 VEDIASHFERIYPMDL-NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
VED+ASHF YP +L +YP+A+YGLI+ FFHGLD YEEM HSISTREVIVRSSRGLSE
Sbjct: 721 VEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSE 780
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVN-ARKSHSLFPAGEPVGVLAAT 771
PGTLFKNLMA+LRDVVICYDGTVRNV SNSIIQF+Y V +S SLFPAGEPVGVLAAT
Sbjct: 781 PGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAAT 840
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
AMSNPAYKAVLDS+PSSN SW++MKEILLC+V F ND DRRVILYLNDCGCGR YCQER
Sbjct: 841 AMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQER 900
Query: 832 AAYMVKNQLKRVSLKDAAVEFLIE 855
AAY+VKN L++VSLKD A F+IE
Sbjct: 901 AAYLVKNHLEKVSLKDIAKCFMIE 924
>gi|356546354|ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2020
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/1048 (63%), Positives = 797/1048 (76%), Gaps = 85/1048 (8%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
ME+N S++L+G +VGI+FG+AT++EICTASIS+ SISHASQL+NPFLGLPLEFG+CESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRL 110
GTSE GKCEGHFGY+ELP+PIYHPSHISELK L M + + G+AQRL
Sbjct: 61 GTSEVGKCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLAQRL 120
Query: 111 LSSCCE-VKEMLKRIPE-------------------------------------ETR--- 129
+S CC+ V L I E ETR
Sbjct: 121 ISPCCQDVNAALVSIREVKTSDGACYLALKVSKSKIHDGFWSFLEKYGYRYEGDETRALL 180
Query: 130 ----------------KKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
KKLAGKG+FPQDGY+L+YLPVPPNCLSVP++SDG S MSSD S+
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDPSM 240
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
+L+K+L++VEII+SSRSG PNFES VE+NDLQ V QY ++RGT+K +RD++ FGV+
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 234 QD-PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
++ S+TKAWLEKMRTLFIRKGSGFSSR+VITGD YKR+NE+G+P E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 352
+HNI YLQ+LVD LCLTY +G S+YSLREGSKGH +L+PGQ+VHRRIMDGD VFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
TTHKHSLQAL VY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV+ELF+VE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVE 480
Query: 413 KQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC-S 471
QLLSSH+GNLNLQL+TD+LL+LK++ K+ FL +A QLAMF L PLPRPAL KA
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDD 540
Query: 472 ARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
A WT++QILQ LP GFD G RYLI++SE+L+ DF RD +P+ INEI SIFF KGP E
Sbjct: 541 ACWTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPME 600
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELV 591
L+FFD LQP LME+LFA+GFSVSLE+FS+S+A I++ I SLLY S NELV
Sbjct: 601 ALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELV 660
Query: 592 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
Q+E HI+ V++ + F LKS+ LG LIDSKS S + KVVQQ GFLG QL DRG+FYSK
Sbjct: 661 AQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSK 720
Query: 652 TLVEDIASHFERIYPMDLN-YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
LV+D+ASHF D + YP+A+YGL+KGCFF+GLDPYEEM HSISTRE++VRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA-RKSHSLFPAGEPVGVLA 769
SEPGTLFKNLMA+LRDVVICYDGTVRN+CSNSIIQF+Y + A K+ LFPAGEPVGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLA 840
Query: 770 ATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQ 829
ATAMSNPAYKAVLD+SP+SN+SWELMKEILLC+V+F N+P+DRRVILYLNDC CG C+
Sbjct: 841 ATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCR 900
Query: 830 ERAAYMVKNQLKRVSLKDAAVEFLIEYK----KPEIISDDEGLVGHIHLNKILLEDLRIS 885
E AAY VKNQL++VSLK+AAVEF+IEY+ + E D GLVGHI+L++++LE+L+IS
Sbjct: 901 ENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKIS 960
Query: 886 MHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLR 945
M ++ KC E LKSF +K KKV Q+ KN LS SE CS A PCL F L+
Sbjct: 961 MANVFEKCLERLKSFSRK---KKVNQYLKNIELSFSESCSSSHPAA------PCLTFWLK 1011
Query: 946 GASDSYLDKLSGVLANMIYPVLLETIIK 973
DS LD VL+ I PVL ETIIK
Sbjct: 1012 N-HDSDLDNAVKVLSENICPVLFETIIK 1038
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 169/247 (68%), Gaps = 13/247 (5%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QR++ASV MVAKGVL+EHLILLA+SMTC G+LVGFN+GGYKALSR LN+QVPFT+ATLF
Sbjct: 1130 QRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFT 1189
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
P+KCFE+AAEK HTD+LSS+VA+CSWGKHVAVGTGS+FD++W + + N+ +G+DVY F
Sbjct: 1190 PKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSF 1249
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGL--EDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLEN 1157
LHMV+S T EE CLGE++D L E+ D +SP+HN FE + E+ + N
Sbjct: 1250 LHMVKSVTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHN-----SGFEAVFEENPEVLN 1304
Query: 1158 KQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS 1217
+ WD ++ +S ++W +S + S E +WGK+ + + S K +
Sbjct: 1305 GSTSNGWDVSSNQTQSKTNEWSGWASSNKDGRSETAQENSWGKTVNQE------DSSKSN 1358
Query: 1218 GWGTEAS 1224
W T +
Sbjct: 1359 AWNTSTT 1365
>gi|296090333|emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 1282 bits (3318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/866 (73%), Positives = 730/866 (84%), Gaps = 11/866 (1%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
EV E+L+RIPE+TRKKL KGYFPQDGYIL+YLPVPPNCLSVPDISDGVS MSSDLS++M
Sbjct: 239 EVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSM 298
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
LKKVLKQ+E+I+ SRSG PNFES ++E+N+LQ ++ QYLEVRGTAK+SR +D RFG S++
Sbjct: 299 LKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKE 358
Query: 236 PN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
PN S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG+PFEIAQRITFEERVNVH
Sbjct: 359 PNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVH 418
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N+ +LQ LVD KLCLTY DG S+YSLREGSKGHTFLRPGQVVHRRIMDGD VFINRPPTT
Sbjct: 419 NMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTT 478
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC+HLFYPQSL AKAEVLELFSVEKQ
Sbjct: 479 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQ 538
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR- 473
LLSSH+GNLNLQLATD+LLSLKV+F++YFL+KA QQL MF LPRPAL K+ CS
Sbjct: 539 LLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPC 598
Query: 474 WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
WTALQILQ+ LP FD G+R+ I KS +LK D++RD + S++NEIVTSIF EKGP EVL
Sbjct: 599 WTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVL 658
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL 593
+FFDSLQPLLMENLF++GFSVSLEDFS+ NIQK ++ + SLLY+ S NEL+ L
Sbjct: 659 KFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQL 718
Query: 594 QIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
Q ENH+R K+ VA FIL SS LG LIDSKSDSA++KVVQQ GFLG QLS++GKFYS+TL
Sbjct: 719 QAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTL 778
Query: 654 VEDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
VE +A F+ YP +YP+ ++GLI+ CFFHGLDPYEEM HSISTRE+IVRSSRGLSE
Sbjct: 779 VEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSE 838
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAAT 771
PGTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y V AR K FPAGEPVGVLAAT
Sbjct: 839 PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAAT 898
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
AMSNPAYKAVLDSSPSSN+SWELMKEILLC+V+F ND IDRRVILYLNDC CGRKYC+E
Sbjct: 899 AMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCREN 958
Query: 832 AAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE----GLVGHIHLNKILLEDLRISMH 887
AAY+VKNQLK+ SLKD AVEF+IEY K +S GLVGHIHLNK+LL+DL +SM
Sbjct: 959 AAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQ 1018
Query: 888 DILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGA 947
++ KC+ET+ SF KK K V FFK LS ECC+FQ SC K S+MPCL+F +G
Sbjct: 1019 EVCQKCEETINSFRKK---KNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGN 1075
Query: 948 SDSYLDKLSGVLANMIYPVLLETIIK 973
D L+++ +LA+ I PVLL+TIIK
Sbjct: 1076 RDDNLEQILHILAHKICPVLLQTIIK 1101
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 178/284 (62%), Gaps = 45/284 (15%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SVTMVAKGVLKEHLILLANSMTCAG+L+GFNSGGYKALSR+LN+QVPFTEATLF
Sbjct: 1193 QRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFT 1252
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKA+EK HTD+LSS+VA+CSWGKHV VGTGSRFD+LW T+ QD G+D+Y F
Sbjct: 1253 PRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSF 1312
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDG--LEDE-FDWSLSPEHNLCSDKPVFEDLVEDQSWLE 1156
LH+VRS + +E DT CLG EV+ LEDE + +SPEH+ +KPVFED E Q+ E
Sbjct: 1313 LHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWE 1372
Query: 1157 NKQE--------NANWDSEADCRKSSEDKWEKLGT---------SLEKP-----SSGWRT 1194
N N N ++ A K S W GT S +P S+GW
Sbjct: 1373 NHVPGSGGDWAVNQNKETTASTLKPS--AWSSWGTDKVTMKDTFSTREPDESSRSAGWDD 1430
Query: 1195 EGAWG------------------KSSDDKLEKAGSPSRKPSGWG 1220
+G WG S D+ + G P S WG
Sbjct: 1431 KGTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWG 1474
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
MEE+ SSTIL+G+I GIRFGLAT++EIC AS+SDC ISHASQL NPFLGLPLEFGKCESC
Sbjct: 1 MEED-SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESC 59
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
GT+EPG+CEGHFGYIELPIPIYHP H+SELK
Sbjct: 60 GTAEPGQCEGHFGYIELPIPIYHPGHVSELK 90
>gi|356555019|ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2098
Score = 1262 bits (3265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1112 (60%), Positives = 804/1112 (72%), Gaps = 112/1112 (10%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
ME+N S++L+G +VGI+FG+AT++EICTASISD SISHASQL+NPFLGLPLEFG+CESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRL 110
GTSE GKCEGHFGYIELPIPIYHPSHIS+LK L + +L + G+AQRL
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRL 120
Query: 111 LSSCC-EVKEMLKRIPE------------ETRKKLAGKGYFP---QDGY----------- 143
+S CC E K L I E + K G++ + GY
Sbjct: 121 ISPCCQEDKAALVSIREVKTSDGACYLALKVSKSKMQNGFWSFLEKYGYRYGGDHTRALL 180
Query: 144 ------ILEYLPV------------------------PPNCLSVPDISDGVSTMSSDLSI 173
I++ +P+ PPNCLSVP++SDGVS MSSD SI
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSI 240
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
+L+K+L++VEII+SSRSG PNFES VE+NDLQ V QY ++RGT+K +RD++ FGV+
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 234 QD-PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
++ S+TKAWLEKMRTLFIRKGSGFSSR+VITGD YKR+NE+G+P E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 352
+HNI YLQ+LVD LCLTY +G S+YSLREGSKGH +L+PGQ+VHRRIMDGD VFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
TTHKHSLQAL VY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV+ELFSVE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
Query: 413 KQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCS- 471
QLLSSH+GNLNLQL+TD+LLSLK++ K+ F D+A QLAMF L PLPRPAL KA
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGD 540
Query: 472 ARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
A WT++QILQ LP GFD G RYLI++SE+L+ +F RD +P+ +NEI S+FF KGP+E
Sbjct: 541 ACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKE 600
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELV 591
L FFD LQP LME+LFA+GFSVSLE+FS+S+A I+K I + SLLY S NELV
Sbjct: 601 ALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELV 660
Query: 592 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
Q+E HIR V++ + F LKS+ LG LIDSKS SA+ KVVQQ GFLG QL DRG+FYSK
Sbjct: 661 AQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSK 720
Query: 652 TLVEDIASHFER--IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
LV+D+ASHF Y D YP+A+YGL+KGCFF+GLDPYEEM HSISTRE++VRSSRG
Sbjct: 721 GLVDDVASHFHAKCCYDGD-GYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRG 779
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA-RKSHSLFPAGEPVGVL 768
LSEPGTLFKNLMA+LRDVVICYDGTVRN+CSNSIIQF+Y + A KS LFPAGEPVGVL
Sbjct: 780 LSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVL 839
Query: 769 AATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYC 828
AATAMSNPAYKAVLD+SPSSN+SWELMKEILLC+V+F N+ +DRRVILYLNDC CG YC
Sbjct: 840 AATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYC 899
Query: 829 QERAAYMVKNQLKRVSLKDAAVEFLIEYK----KPEIISDDEGLVGHIHLNKILLEDLRI 884
+E AAY VK+QL++VSLKDAAVEF+IEY+ + E D GLVGHI+L++++LE+L+I
Sbjct: 900 RENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKI 959
Query: 885 SMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQ----------SCADKR 934
SM + KC E LKSF +K KKV Q KN LS S SC+
Sbjct: 960 SMAYVFDKCHERLKSFSQK---KKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESCSSSH 1016
Query: 935 SNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK----------------ENWWV 978
PCL F L+ DS LD VLA I PVL +TII+ N WV
Sbjct: 1017 PAAPCLTFWLKNY-DSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWV 1075
Query: 979 RQRLSASVTMVAKGVLKEHLILLANSMTCAGD 1010
R +S G L +IL ++ +GD
Sbjct: 1076 RNPYKSS-----NGELALDIILEKEAVKQSGD 1102
Score = 236 bits (601), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 11/239 (4%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QR++ASV MVAKGVL+EHLILLA+SMTC G+LVGFN GGYKALSR LN+QVPFT+ATLF
Sbjct: 1146 QRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFT 1205
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
P+KCFE+AAEK HTD+LSS+VA+CSWGKHVAVGTGS+FD++W + N+ +G+DVY F
Sbjct: 1206 PKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSF 1265
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGL--EDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLEN 1157
LHMV+S T EE CLGE++D L E+ D +SP+HN FE + E+ + N
Sbjct: 1266 LHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHN-----SGFEAVFEENPEVLN 1320
Query: 1158 KQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTE----GAWGKSSDDKLEKAGSP 1212
+ WD ++ +S ++W +S + R+E +WGK+ + + +P
Sbjct: 1321 GSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSWGKTVNQEDSSKSNP 1379
>gi|297823913|ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
gi|297325678|gb|EFH56098.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 1236 bits (3199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1034 (60%), Positives = 768/1034 (74%), Gaps = 83/1034 (8%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFG 73
IVGI+F LAT EIC ASIS +I+H SQL N FLGLPLEFGKCESCG +EP KCEGHFG
Sbjct: 14 IVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCEGHFG 73
Query: 74 YIELPIPIYHPSHISELKLTMY------------------------------AFQLQIKN 103
YI+LP+PIYHP+H++ELK + A Q+ I++
Sbjct: 74 YIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKSTSGGLADRLLGVCCEEASQISIRD 133
Query: 104 ---DGVA---------QRLLSSCC---------------------EVKEMLKRIPEETRK 130
DG + RL + C EVKE+L+RIPEETRK
Sbjct: 134 RASDGASYLELKLPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIPEETRK 193
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
KL KG+ PQ+GYILEYLPVPPNCLSVPD+SDG S+MS D S LK VLK+V I+SSR
Sbjct: 194 KLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGYSSMSVDPSRIELKDVLKKVIAIKSSR 253
Query: 191 SGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTK-AWLEKMRT 249
SG NFES + E+ND+ V YL+VRGTAK++R++D R+GVS+ +S++ AW +KMRT
Sbjct: 254 SGETNFESHKAEANDMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWTQKMRT 313
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL 309
LFIRKGSGFSSRSVITGDAY+ VNE+G+P EIAQRITFEERV+VHNI YLQ+LVD+KLCL
Sbjct: 314 LFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNIGYLQKLVDDKLCL 373
Query: 310 TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
+Y+ GS++YSLR+GSKGHT L+PGQVVHRR++DGD VFINRPPTTHKHSLQAL VYVH+D
Sbjct: 374 SYTQGSTTYSLRDGSKGHTVLKPGQVVHRRVIDGDVVFINRPPTTHKHSLQALRVYVHED 433
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
+TVKINPL+C PLSADFDGDC+HLFYPQSL+AKAEV+ELFSVEKQLLSSH G L LQ+
Sbjct: 434 NTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGC 493
Query: 430 DALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSK-ARCSARWTALQILQSVLPPGF 488
D+LLSL+VM + FLDKA QQLAM+ LP PAL K ++ WT QILQ P
Sbjct: 494 DSLLSLRVMLEGVFLDKATAQQLAMYGSLTLPPPALRKSSKSGPAWTVFQILQLAFPERL 553
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
GDR+++ S++LK DF D + S+INEIVTSIF EKGP+E L FFDSLQPLLME+LF
Sbjct: 554 SCKGDRFMVDGSDLLKFDFGVDAMASIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLF 613
Query: 549 ADGFSVSLEDFSLSKAALWNIQ----KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKM 604
A+GFSVSLED S+S+A + I +EI + S L R+S ++E LQ+EN + VK
Sbjct: 614 AEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRL--RLSYRDE---LQLENSLHKVKE 668
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+ A F+LKS ++ LID KS+SA++K+VQQ GFLGLQLSD+ KFY+KTLVED+A +R
Sbjct: 669 VAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCKRK 728
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
Y + + +G++KGCFFHGLDPYEEM HSI+ REVIVRSSRGL+EPGTLFKNLMAVL
Sbjct: 729 YGRISS--SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVL 786
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSH-SLFPAGEPVGVLAATAMSNPAYKAVLD 783
RD+VI DGTVRN CSNS++QF Y V++ + H LF AGEPVGVLAATAMSNPAYKAVLD
Sbjct: 787 RDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLD 846
Query: 784 SSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRV 843
S+ +SN+SWE MKE+LLC+V+F N DRRVILYLN+C CG+++CQE AAY V+N+LK+V
Sbjct: 847 STANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKV 906
Query: 844 SLKDAAVEFLIEYKKPEIISD----DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKS 899
SLKD AVEFL+EY+K + IS+ D L GHIHL+K LL+D ISM DIL KC++ + S
Sbjct: 907 SLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISMQDILQKCEDVINS 966
Query: 900 FCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL 959
+KKK KK FK TSLS+SECCSFQ C K S+MPCLMF A+D L++ VL
Sbjct: 967 LGQKKK-KKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSY-SATDPDLERTLDVL 1024
Query: 960 ANMIYPVLLETIIK 973
N IYPVLLET+IK
Sbjct: 1025 CNTIYPVLLETVIK 1038
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 152/253 (60%), Gaps = 15/253 (5%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLSASV MV+KGVLKEH+ILLAN+MTC+G+++GFNSGGYKAL+RSLN++ PFTEATL
Sbjct: 1130 QRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLIT 1189
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PR+CFEKAAEK HTD+LS+VV +CSWGK V VGTGS+F+LLW + + + DVY F
Sbjct: 1190 PRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGLEDEF-DWSLSPEHNLCSDKPVFEDLVEDQSWL-EN 1157
L MVRS+T D D E+E +W+ SPE + +P FED E Q+ E
Sbjct: 1250 LQMVRSTTNA---DAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDEG 1306
Query: 1158 KQENANWDSEAD----CRKSSEDKWEKLGTSLEKPSSGW------RTEGAWGKSSDDKLE 1207
K +NW+ + C SE K P S W E AW + K
Sbjct: 1307 KPSESNWEKSSSWDNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEKEDAWSSWNTKKDA 1366
Query: 1208 KAGSPSRKPSGWG 1220
+ S S WG
Sbjct: 1367 QESSKSDSGVAWG 1379
>gi|79571777|ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName: Full=DNA-directed RNA polymerase E subunit 1; Short=Nuclear
RNA polymerase E 1; AltName: Full=DNA-directed RNA
polymerase D subunit 1b; Short=AtNRPD1b; Short=Nuclear
RNA polymerase D 1b; AltName: Full=Protein DEFECTIVE IN
MERISTEM SILENCING 5; AltName: Full=Protein DEFECTIVE IN
RNA-DIRECTED DNA METHYLATION 3; AltName: Full=Protein
RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; AltName:
Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B [Arabidopsis thaliana]
Length = 1976
Score = 1234 bits (3192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/1047 (60%), Positives = 773/1047 (73%), Gaps = 83/1047 (7%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
MEE ++S IL+G+IVGI F LA+ EIC SIS+ +I+H SQL N FLGLPLEFGKCESC
Sbjct: 1 MEEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMY------------------------- 95
G +EP KCEGHFGYI+LP+PIYHP+H++ELK +
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLADRLLG 120
Query: 96 -----AFQLQIKN---DGVA---------QRLLSSCC---------------------EV 117
A Q+ IK+ DG + RL C EV
Sbjct: 121 VCCEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAREV 180
Query: 118 KEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
KE+L+RIPEE+RKKL KG+ PQ+GYILEYLPVPPNCLSVP+ SDG STMS D S LK
Sbjct: 181 KEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELK 240
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
VLK+V I+SSRSG NFES + E++++ V YL+VRGTAK++R++D R+GVS+ +
Sbjct: 241 DVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKISD 300
Query: 238 STTK-AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
S++ AW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P EIAQRITFEERV+VHN
Sbjct: 301 SSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNR 360
Query: 297 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 356
YLQ+LVD+KLCL+Y+ GS++YSLR+GSKGHT L+PGQVVHRR+MDGD VFINRPPTTHK
Sbjct: 361 GYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHK 420
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
HSLQAL VYVH+D+TVKINPL+C PLSADFDGDC+HLFYPQSL+AKAEV+ELFSVEKQLL
Sbjct: 421 HSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLL 480
Query: 417 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSK-ARCSARWT 475
SSH G L LQ+ +D+LLSL+VM ++ FLDKA QQLAM+ LP PAL K ++ WT
Sbjct: 481 SSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWT 540
Query: 476 ALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
QILQ P GDR+L+ S++LK DF D + S+INEIVTSIF EKGP+E L F
Sbjct: 541 VFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGF 600
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ----KEIQALYSLLYHRMSTQNELV 591
FDSLQPLLME+LFA+GFS+SLED S+S+A + I +EI + S L R+S ++E
Sbjct: 601 FDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRL--RLSYRDE-- 656
Query: 592 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
LQ+EN I VK + A F+LKS ++ LID KS+SA++K+VQQ GFLGLQLSD+ KFY+K
Sbjct: 657 -LQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTK 715
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TLVED+A +R Y + + +G++KGCFFHGLDPYEEM HSI+ REVIVRSSRGL+
Sbjct: 716 TLVEDMAIFCKRKYGRISS--SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH-SLFPAGEPVGVLAA 770
EPGTLFKNLMAVLRD+VI DGTVRN CSNS+IQF Y V++ + H LF AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 771 TAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQE 830
TAMSNPAYKAVLDSSP+SN+SWELMKE+LLC+V+F N DRRVILYLN+C CG+++CQE
Sbjct: 834 TAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893
Query: 831 RAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISD----DEGLVGHIHLNKILLEDLRISM 886
AA V+N+L +VSLKD AVEFL+EY+K IS+ D L GHIHLNK LL+D ISM
Sbjct: 894 NAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953
Query: 887 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRG 946
DI KC++ + S +KKK KK FK TSLS+SECCSF+ C K S+MPCL F
Sbjct: 954 QDIHQKCEDVINSLGQKKK-KKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYN- 1011
Query: 947 ASDSYLDKLSGVLANMIYPVLLETIIK 973
A+D L++ VL N +YPVLLE +IK
Sbjct: 1012 ATDPDLERTLDVLCNTVYPVLLEIVIK 1038
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 150/253 (59%), Gaps = 15/253 (5%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLSASV MV+KGVLKEH+ILLAN+MTC+G ++GFNSGGYKAL+RSLN++ PFTEATL
Sbjct: 1130 QRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIA 1189
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKAAEK HTD+LS+VV +CSWGK V VGTGS+F+LLW + + + DVY F
Sbjct: 1190 PRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGLEDEF-DWSLSPEHNLCSDKPVFEDLVEDQSWL-EN 1157
L MV S+T D D E+E +W+ SPE + +P FED + Q+ E
Sbjct: 1250 LQMVISTTNA---DAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADFQNLHDEG 1306
Query: 1158 KQENANWDSEAD----CRKSSEDKWEKLGTSLEKPSSGW------RTEGAWGKSSDDKLE 1207
K ANW+ + C SE K P S W E AW + K
Sbjct: 1307 KPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDA 1366
Query: 1208 KAGSPSRKPSGWG 1220
+ S S WG
Sbjct: 1367 QESSKSDSGGAWG 1379
>gi|68300849|gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/1047 (60%), Positives = 772/1047 (73%), Gaps = 83/1047 (7%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
MEE ++S IL+G+IVGI F LA+ EIC SIS+ +I+H SQL N FLGLPLEFGKCESC
Sbjct: 1 MEEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMY------------------------- 95
G +EP KCEGHFGYI+LP+PIYHP+H++ELK +
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLADRLLG 120
Query: 96 -----AFQLQIKN---DGVA---------QRLLSSCC---------------------EV 117
A Q+ IK+ DG + RL C EV
Sbjct: 121 VCCEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAREV 180
Query: 118 KEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
KE+L+RIPEE+RKKL KG+ PQ+GYILEYLPVPPNCLSVP+ SDG STMS D S LK
Sbjct: 181 KEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELK 240
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
VLK+V I+SSRSG NFES + E++++ V YL+VRGTAK++R++D R+GVS+ +
Sbjct: 241 DVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKISD 300
Query: 238 STTK-AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
S++ AW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P EIAQRITFEERV+VHN
Sbjct: 301 SSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNR 360
Query: 297 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 356
YLQ+LVD+KLCL+Y+ GS++YSLR+GSKGHT L+PGQVVHRR+MDGD VFINRPPTTHK
Sbjct: 361 GYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHK 420
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
HSLQAL VYVH+D+TVKINPL+C PLSADFDGDC+HLFYPQSL+AKAEV+ELFSVEKQLL
Sbjct: 421 HSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLL 480
Query: 417 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSK-ARCSARWT 475
SSH G L LQ+ +D+LLSL+VM ++ FLDKA QQLAM+ LP PAL K ++ WT
Sbjct: 481 SSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWT 540
Query: 476 ALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
QILQ P GDR+L+ S++LK DF D + S+INEIVTSIF EKGP+E L F
Sbjct: 541 VFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGF 600
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ----KEIQALYSLLYHRMSTQNELV 591
FDSLQPLLME+LFA+GFS+SLED S+S+A + I +EI + S L R+S ++E
Sbjct: 601 FDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRL--RLSYRDE-- 656
Query: 592 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
LQ+EN I VK + A F+LKS ++ LID KS+SA++K+VQQ GFLGLQLSD+ KFY+K
Sbjct: 657 -LQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTK 715
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TLVED+A +R Y + + +G++KGCFFHGLDPYEEM HSI+ REVIVRSSRGL+
Sbjct: 716 TLVEDMAIFCKRKYGRISS--SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH-SLFPAGEPVGVLAA 770
EPGTLFKNLMAVLRD+VI DGTVRN CSNS IQF Y V++ + H LF AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSXIQFKYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 771 TAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQE 830
TAMSNPAYKAVLDSSP+SN+SWELMKE+LLC+V+F N DRRVILYLN+C CG+++CQE
Sbjct: 834 TAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893
Query: 831 RAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISD----DEGLVGHIHLNKILLEDLRISM 886
AA V+N+L +VSLKD AVEFL+EY+K IS+ D L GHIHLNK LL+D ISM
Sbjct: 894 NAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953
Query: 887 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRG 946
DI KC++ + S +KKK KK FK TSLS+SECCSF+ C K S+MPCL F
Sbjct: 954 QDIHQKCEDVINSLGQKKK-KKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYN- 1011
Query: 947 ASDSYLDKLSGVLANMIYPVLLETIIK 973
A+D L++ VL N +YPVLLE +IK
Sbjct: 1012 ATDPDLERTLDVLCNTVYPVLLEIVIK 1038
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 150/253 (59%), Gaps = 15/253 (5%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLSASV MV+KGVLKEH+ILLAN+MTC+G ++GFNSGGYKAL+RSLN++ PFTEATL
Sbjct: 1130 QRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIA 1189
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKAAEK HTD+LS+VV +CSWGK V VGTGS+F+LLW + + + DVY F
Sbjct: 1190 PRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGLEDEF-DWSLSPEHNLCSDKPVFEDLVEDQSWL-EN 1157
L MV S+T D D E+E +W+ SPE + +P FED + Q+ E
Sbjct: 1250 LQMVISTTNA---DAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADFQNLHDEG 1306
Query: 1158 KQENANWDSEAD----CRKSSEDKWEKLGTSLEKPSSGW------RTEGAWGKSSDDKLE 1207
K ANW+ + C SE K P S W E AW + K
Sbjct: 1307 KPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDA 1366
Query: 1208 KAGSPSRKPSGWG 1220
+ S S WG
Sbjct: 1367 QESSKSDSGGAWG 1379
>gi|224057314|ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 842
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/883 (67%), Positives = 698/883 (79%), Gaps = 69/883 (7%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
M+E S+I EG+I GIRFGLA+QKEI +
Sbjct: 1 MDEIPQSSIFEGEITGIRFGLASQKEIVS------------------------------- 29
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF----------QLQIKNDGVAQRL 110
HFGYI+LP+PIYHPSHISELK + ++QIK++GVA+RL
Sbjct: 30 ----------HFGYIDLPVPIYHPSHISELKRMLSLLCLKCLKLKRNKIQIKSNGVAERL 79
Query: 111 LSSCCEVKEMLKR--------------IPEETRKKLAGKGYFPQDGYILEYLPVPPNCLS 156
LS C E ++ R +P +R + GKGYFPQDGYIL+ LPVPPNCLS
Sbjct: 80 LSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGGKGYFPQDGYILQQLPVPPNCLS 139
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV 216
VP +SDG+S MSSDLSI++LKKVLKQVE+I+SSRSG PNF++ + E+N LQ V +YL+V
Sbjct: 140 VPAVSDGISIMSSDLSISILKKVLKQVEVIKSSRSGAPNFDAHKDEANSLQSMVDRYLQV 199
Query: 217 RGTAKSSRDVDARFGVSQDPN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
RGT K+SRDVD R+GV +D + S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAY +VN++
Sbjct: 200 RGTTKTSRDVDVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQV 259
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
G+P+EIAQRITFEERV+VHN+ YLQELVDNKLCLTY DGSS+YSLREGSKGHTFLRPGQV
Sbjct: 260 GIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQV 319
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
VHRRI+DGD VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC+HLFY
Sbjct: 320 VHRRIIDGDVVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFY 379
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMF 455
PQSLAAKAEVLELFSVEKQLLSSH+GNLNLQL TD+LLSLK++FK FLDK+ QQLAMF
Sbjct: 380 PQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIFKACFLDKSAAQQLAMF 439
Query: 456 ALSPLPRPALSKARC-SARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPS 514
LP+PAL K C WTA QILQ LP F+ G+R+LI S VLK DF+RD + S
Sbjct: 440 VSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFNCSGERFLINNSNVLKVDFNRDVVAS 499
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ 574
+INEI+ SIFFEKG VL+FF++LQPLLMENLF++GFSVSL+DFS+S+A +IQ+ +
Sbjct: 500 MINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQESFK 559
Query: 575 ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQ 634
+ LL + ST NELV+LQ+ENHI+ VK V +FIL SS LGYLIDSKSD AV+K+VQQ
Sbjct: 560 VISPLLCNLRSTYNELVELQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVAKLVQQ 619
Query: 635 AGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEM 693
GFLGLQ+SDRGK YSKTLVED+ASHF+ YP + LNYP+A+YGLI+ FFHGLD YEEM
Sbjct: 620 IGFLGLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYEEM 679
Query: 694 THSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVN-A 752
HSISTREVIVRSSRGLSEPGTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQ +Y V
Sbjct: 680 AHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQSEYGVKVG 739
Query: 753 RKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDR 812
+S SLFPAGEPVGVLAATAMSNPAYKAVLDS+PSSN+SW++MKEILLC+V F ND DR
Sbjct: 740 AESQSLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNDQADR 799
Query: 813 RVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIE 855
RVILY N CGCGR++CQE+AA++VKN L++VSLKD A F+IE
Sbjct: 800 RVILYFNYCGCGREHCQEKAAFLVKNHLEKVSLKDVAKCFMIE 842
>gi|59939212|gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/843 (67%), Positives = 678/843 (80%), Gaps = 21/843 (2%)
Query: 147 YLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDL 206
Y+PVPPNCLSVPDISDGVS MSSDL AMLKKVL+Q+E+IRSSRSG PNFES EVE+NDL
Sbjct: 2 YVPVPPNCLSVPDISDGVSVMSSDLCSAMLKKVLRQIEVIRSSRSGEPNFESHEVEANDL 61
Query: 207 QLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITG 266
Q+AV QYL+VRGT K++R D R+GVS++ N+++KAW+EKMRTLFI KGSGFSSRSVITG
Sbjct: 62 QVAVSQYLQVRGTGKAARAADNRYGVSKEGNNSSKAWVEKMRTLFISKGSGFSSRSVITG 121
Query: 267 DAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKG 326
DAY+ VNE+GVP EIAQ++TFEERVNVHNI YLQ LVD LCLT+ DG S+YSLREGSKG
Sbjct: 122 DAYRAVNEVGVPCEIAQKMTFEERVNVHNIQYLQGLVDKNLCLTFRDGLSTYSLREGSKG 181
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
HTFLR GQ+VHRRIMDGD VFINRPPTTHKHSLQAL VY+HDDH VKINPL+CGPL+ADF
Sbjct: 182 HTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQALRVYIHDDHVVKINPLMCGPLAADF 241
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDK 446
DGDC+HLFYPQSL+A+AEVLELFSVEKQLLSSH+GNLNLQL+TD+LLSLK MF+ YFLD+
Sbjct: 242 DGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLSLKTMFEVYFLDR 301
Query: 447 AFTQQLAMFALSPLPRPALSKARCSA------------RWTALQILQSVLPPGFDSCGDR 494
A QLAM+A S LP PAL KA CS+ RWTA Q+LQ+ LP F+ GDR
Sbjct: 302 ASANQLAMYASSLLPSPALWKA-CSSNAKKKKAHSSGPRWTAQQVLQTALPSHFECHGDR 360
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
LI SE+LK DF+RD + SVI++++TS+FF K P++ L+FFDSLQPLLMENLF++GFSV
Sbjct: 361 LLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSPKDALDFFDSLQPLLMENLFSEGFSV 420
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
SL DF K+ L NIQ+ IQ L LL S+ NELV +Q ENHIR K V FIL SS
Sbjct: 421 SLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNELVQVQFENHIREFKSPVGNFILISS 480
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
LG +IDS+SDSA+ K+VQQ GFLGLQLSDR KFYS+ LVED+AS F + YP YP+
Sbjct: 481 ALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQKYPFADVYPSE 540
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
++G + CFFHGLDPYEE+ HSI+TREVIVRSS+GL+EPGTLFKNLMAVLRDVVICYDGT
Sbjct: 541 EFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGT 600
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWEL 794
VRN+ SNS+IQF+Y V +S +LFPAG+PVGVLAATAMSNPAYKAVLDSSP+SN+SW++
Sbjct: 601 VRNISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDSSPNSNSSWDM 660
Query: 795 MKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLI 854
MKEIL CR +F ND DRRVILYLNDC CGRKYCQE A+ +VKN LK+VSL+DAA+E I
Sbjct: 661 MKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIELAI 720
Query: 855 EYKKPEIISD----DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVV 910
EYK+P++ + D GLVGHIHLN LL+ I MHDIL KC+E + KKKK
Sbjct: 721 EYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYG--- 777
Query: 911 QFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLET 970
FK LS+S+CC F S + K ++MPCL F + +D+ L++ ++A+MI PVLL+T
Sbjct: 778 YHFKRILLSVSDCCFFNHSDS-KWTDMPCLKFFWQDMTDTDLERTKHIMADMICPVLLDT 836
Query: 971 IIK 973
IIK
Sbjct: 837 IIK 839
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 231/447 (51%), Gaps = 66/447 (14%)
Query: 812 RRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGH 871
+R++L ++DC C + + M + + D +E + I++D ++
Sbjct: 781 KRILLSVSDC-CFFNHSDSKWTDMPCLKFFWQDMTDTDLE-----RTKHIMAD---MICP 831
Query: 872 IHLNKILLEDLRISMHDIL---PKCQETLKSFCKKKK---------MKKVVQFFKNTSLS 919
+ L+ I+ D RIS +I+ P ++S C K K+ V+ +
Sbjct: 832 VLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRI 891
Query: 920 ISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKENWWVR 979
+ +CC D R ++P + ++ D L G+ V
Sbjct: 892 VLDCCLPVFHLIDTRRSIP---YAIKQIQD-----LFGISCAFDQAV------------- 930
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SVTMV KGVLKEHL+LLA+SMTCAG+LVGFN+ G KAL R+LNVQVPFTEATL+
Sbjct: 931 QRLSTSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYT 990
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFE+A+EK H D L+S+V +CSWGK V++GTG++FDLLW+T+ E D DVY+F
Sbjct: 991 PRKCFERASEKCHVDTLASIVGSCSWGKRVSIGTGAKFDLLWETKEIEM-ADKPTDVYNF 1049
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGLEDE--FDWSLSPEHNLCSDKPVFEDLVE------- 1150
LH+V SS EE+D+G LGE+++ E + + +LSPE +K VFE+ +E
Sbjct: 1050 LHLV-SSANEEEVDSGGLGEDIESFEKDVYMEPALSPEQE---NKAVFEETLEIGVDSDI 1105
Query: 1151 ----DQSWLENKQENANWDSEA--DCRKSSEDKWEKLGTSLEK--PSSGWRTEGAWGKSS 1202
+ SW W++ S+E W G+ ++ P +T G W S
Sbjct: 1106 TGADESSWDAFPSSGTGWNANKIDTGSGSAEGGWSSWGSKKDQANPEDSSKT-GGW-SSG 1163
Query: 1203 DDKLEKAGSPSRKPSGWGTEASWGESS 1229
K + S K GW SWG S+
Sbjct: 1164 GSKQKPQPEDSSKSGGWDASKSWGGSN 1190
>gi|357515099|ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 2032
Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/887 (65%), Positives = 705/887 (79%), Gaps = 28/887 (3%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
CE E++KR+P+ET+KKLAGKGYFPQDGYIL+YLPVPPNCLSVP +SDGVS MSSD ++
Sbjct: 264 CEAMEIIKRLPQETKKKLAGKGYFPQDGYILKYLPVPPNCLSVPVVSDGVSIMSSDPALT 323
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ 234
+L+K+L++VE+IRSSRSG PNFES +VE+NDLQ V QYL++RGT+K++RD++ +GV++
Sbjct: 324 ILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVNK 383
Query: 235 DPN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
+ N S+TKAWLEKMRTLFIRKGSGFSSR+VITGD YK++NE+G+P E+AQRITFEERV++
Sbjct: 384 ELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSI 443
Query: 294 HNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPT 353
HNI+YLQ+LVD LCLTY +G S+YSLREGSKGHT+L+PGQ+VHRRIMDGDTVFINRPPT
Sbjct: 444 HNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPPT 503
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
THKHSLQAL VY+HDDHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEVLELFSVEK
Sbjct: 504 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEK 563
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCS-A 472
QLLSSH+GNLNLQL+ D+LLSLK++ K FLD+ Q+AMF L PLP PAL KA +
Sbjct: 564 QLLSSHSGNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDS 623
Query: 473 RWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
WT++QILQ LP FD G RYLI++ E+L+ DF RD +PS+INEI SIFF KGP+E
Sbjct: 624 YWTSIQILQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEA 683
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD 592
L FFD +QP LMEN+FA GFSV L+DFS+S+A I + I + LL ELV
Sbjct: 684 LNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVA 743
Query: 593 LQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
Q+E I+ +++ V F LKS+ LG LIDSKS SAV KV+QQ GFLG QL +RGKFYSK
Sbjct: 744 QQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKG 803
Query: 653 LVEDIASHFER--IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
LVED+ASHF+ Y D +YP+A++GL+KGCFFHGLDPYEE+ HSI+TRE+I RSSRGL
Sbjct: 804 LVEDVASHFQLKCFYDKD-DYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGL 862
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLA 769
SEPGTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y + + + LFPAGEPVGVLA
Sbjct: 863 SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLA 922
Query: 770 ATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQ 829
AT+MSNPAYKAVLD+SPSSN+SW MKEILLC+V+F N+P DRRVILYLNDC CGR YC+
Sbjct: 923 ATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCR 982
Query: 830 ERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISD---DEGLVGHIHLNKILLEDLRISM 886
E AAY+V+NQL++VSLKDAA++F++EY++ D D GLV HI L ++ LE+L+I+M
Sbjct: 983 ENAAYLVQNQLRKVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINM 1042
Query: 887 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRG 946
++ KCQE L SF +KKK+ FFK T L SE CS PC+ F+
Sbjct: 1043 TEVYQKCQEKLNSFSRKKKLSP---FFKRTELIFSEFCS-----------APCVTFLWPD 1088
Query: 947 ASDSYLDKLSGVLANMIYPVLLETIIKENWWVRQRLSASVTMVAKGV 993
D LD+ + VLA+MI PVLLETII+ + + SAS+ V G
Sbjct: 1089 GVD--LDQTTKVLADMICPVLLETIIQGDPRIS---SASIIWVNPGT 1130
Score = 216 bits (550), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 180/308 (58%), Gaps = 63/308 (20%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRL+ASV MVAKGVL+EHLILLA+SMTC G+LVGFN+GGYK L+R L++QVPFT+ATLF+
Sbjct: 1205 QRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFV 1264
Query: 1040 --------------------------PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGT 1073
PRKCFE+AAEK H+D+LSS+VA+CSWGKHVAVGT
Sbjct: 1265 SALVISKLQDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGT 1324
Query: 1074 GSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDE--FDWS 1131
GS+FD++W + + N+ +G++VY FL+MV+ EE CLGE++D L D+ D+
Sbjct: 1325 GSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKGLANGEEETNACLGEDIDDLFDDENGDFD 1384
Query: 1132 LSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDS---EADCRKSSEDKWEKLGTS---- 1184
+SP+H D VF++ E L N + WDS + D ++ + W G +
Sbjct: 1385 MSPQHASGFDA-VFDETFE----LPNGSTSNGWDSNKDQIDQPNTNSNDWSGWGPNKSDL 1439
Query: 1185 ----LEKPSSGWRTEGAWGKSSDDKLEKAGSP---------SRKPSGWGT-------EAS 1224
+++ SS AWG +++ K +++ S S K WGT + S
Sbjct: 1440 QVDVIQEDSS---KSSAWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSEQPS 1496
Query: 1225 WGESSCDK 1232
WG ++ K
Sbjct: 1497 WGAATNQK 1504
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 100/156 (64%), Gaps = 40/156 (25%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
ME+N ++++L+G++VGIRF +AT+ EI TASISD ISHASQLANPFLGLPLEFG+CESC
Sbjct: 53 MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESC 112
Query: 61 GTSEPGKCE------------------------------GHFGYIELPIPIYHPSHISEL 90
GTSE GKCE GHFGYIELP+PIYHPSH++EL
Sbjct: 113 GTSEAGKCEGLLFDHFLYCHSDGKMLYFKRIGLNNYYFSGHFGYIELPVPIYHPSHVTEL 172
Query: 91 K----------LTMYAFQLQIKNDGVAQRLLSSCCE 116
K L + ++ + G+AQRLLS CCE
Sbjct: 173 KKILSLVCLSCLRLKKTKVPSSSSGLAQRLLSPCCE 208
>gi|218190083|gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
Length = 1867
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/1143 (49%), Positives = 756/1143 (66%), Gaps = 44/1143 (3%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
E +LK+IPEET++KLA +GY Q GY+++YLPVPPNCL +P+ +DG S MS D+SI++
Sbjct: 185 EALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISL 244
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
LKKVL+++E I+ SR+G+PNFES EVES DLQL++ QY+ +RGT + +D RF +S D
Sbjct: 245 LKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTD 304
Query: 236 PNS-TTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
P++ +TK WLEKMRTLFI KGSGFSSRSV+TGD Y V+ IG+P E+A+RITFEE+V
Sbjct: 305 PSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDI 364
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N+N LQE+VD LCLTY DG ++Y++ GSKGHT L+ GQ + RRI+DGD VF+NRPP+T
Sbjct: 365 NLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPST 424
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQA VYVH+DHTVKINPLIC P +ADFDGDC+H++YPQSLAAKAE LELFSVEKQ
Sbjct: 425 HKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQ 484
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARW 474
L SSH+G +NLQL +D+LL+LK M + L K QLAM LP PA+ K++ W
Sbjct: 485 LTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSK--PYW 542
Query: 475 TALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
T QI+Q LP S GD+++++ S ++K D D++++ + +++V S KGP E L+
Sbjct: 543 TISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPGEALQ 602
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ 594
F + LQPLLME + DGFSVSL+DF++ K L QK I+ +L +N++V+++
Sbjct: 603 FLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVEMR 662
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
++N+++ +K ++ F++K S LG LID KSDS+VSKVVQQ GF+GLQL GKFYS+ LV
Sbjct: 663 VDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRRLV 722
Query: 655 EDIASHFERIYPM--DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
ED F +P + + P A YGL++ +FHGL+PYEE+ H+ISTRE IVRSSRGL+E
Sbjct: 723 EDCYYTFVNKHPAVREEHSPEA-YGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTE 781
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLAAT 771
PGTLFKNLMA+LRDVVICYDGTVRNVCS SIIQ +Y +A S GEPVGVLAAT
Sbjct: 782 PGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVGVLAAT 841
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
A+SNPAYKAVLD+S S+N SWE MKEIL + ND DR+VIL+LNDC C +K+C+E+
Sbjct: 842 AISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEK 901
Query: 832 AAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE-----GLVGHIHLNKILLEDLRISM 886
AA V+ L+R++L+D A + IEY+K +I D LVGHIHL++ LE + IS
Sbjct: 902 AAIAVQGCLRRITLEDCATDICIEYQK-QIGLDGTSEAAPALVGHIHLDRAHLERINIST 960
Query: 887 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSI-SECCSFQQSCADKRSNMPCLMFVLR 945
DIL KCQE + KKK + + + + S+ S+ ++ P + ++
Sbjct: 961 EDILQKCQEVSGKYGKKKGHLSDPRIQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVE 1020
Query: 946 GASDSYLDKLSGVLANMIYPVLLETIIKENW------------------WVRQRLSASVT 987
++ + PVL I+ + V QRLS +V
Sbjct: 1021 EEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVR 1080
Query: 988 MVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKA 1047
MVAK VLK+HL+L+ANSMT G+L GFN+ GYKA RSL VQVPFTE+TL P KCFEKA
Sbjct: 1081 MVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKA 1140
Query: 1048 AEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSST 1107
AEK H+D+L VV++CSWGKH A GTGS F +LW + N++ G +YD+L +VR+
Sbjct: 1141 AEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDYLALVRTD- 1199
Query: 1108 GIEELDTGCLGEEVDGL--EDEFDWSLSPEHNLCSDKPVFEDLVEDQ------SWLENKQ 1159
EE ++VD L E+E D LSPE + +P+F+D +E+Q SW
Sbjct: 1200 --EEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQNNSSWDNGTT 1257
Query: 1160 ENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGW 1219
NA+W+ S DKW + +G G S D S GW
Sbjct: 1258 TNASWEQNGSAGNDS-DKWGGWNDAAAGADTGVTKPANQGNSCWDVPATVEKSSSDWGGW 1316
Query: 1220 GTE 1222
GTE
Sbjct: 1317 GTE 1319
Score = 136 bits (342), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Query: 1 MEENTSST-ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE+ S+ + EG I I+ L+T+ EI T SI+DC ++H SQL NPFLGLPLE GKCES
Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
CG SE GKCEGHFGYIELP+PIYHP H++EL+
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELR 92
>gi|357155574|ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
distachyon]
Length = 1935
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/1086 (50%), Positives = 719/1086 (66%), Gaps = 85/1086 (7%)
Query: 1 MEENTSSTIL-EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE+ S+ ++ EG I I+ L+T+ EI T SI+DC ++H SQL NPFLGLPLE GKCES
Sbjct: 1 MEEDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMY------------------------ 95
CG SE GKCEGHFGYIELP+PIYHP H+SEL+ +
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGKDVPALSLKEVK 120
Query: 96 ----AFQLQIKNDGVAQRLLSSCC-----------------------EVKEMLKRIPEET 128
AF+L+++ +RL+ E +LK+IP++T
Sbjct: 121 TADGAFRLELR--APPRRLMKDSSWNFLDKYGFHHGGASHFRTLLPEEALNILKKIPDDT 178
Query: 129 RKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRS 188
RKKLA +GY Q GY+++YLPVPPNCL +P+ +DG S MS D+SI++LKK+L ++E I+
Sbjct: 179 RKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKILHRIEQIKK 238
Query: 189 SRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNS-TTKAWLEKM 247
SR+GTPNFES E ES+DLQ+++ QY+ +RGT K +D RF +S D + +TK WLEKM
Sbjct: 239 SRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDT-KRFTISTDSSHLSTKQWLEKM 297
Query: 248 RTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL 307
RTLFI KGSGFSSRSV+TGD Y V+ +G+P E+A+RITFEE+V NI LQE+VD L
Sbjct: 298 RTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEEQVTDINIKRLQEVVDKGL 357
Query: 308 CLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
CLTY DG ++Y++ GSKG+T L+ GQ + RRI+DGD VF+NRPP+THKHSLQA VY+H
Sbjct: 358 CLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYVYIH 417
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
DDHTVKINPLIC PL+ADFDGDC+H++YPQSLAAKAE LELFSVEKQL +SHNG +NLQL
Sbjct: 418 DDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQL 477
Query: 428 ATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKAR-CSARWTALQILQSVLPP 486
+ D+LL+LK M + L K QLAM LP PA+ K + C WT QI+Q LP
Sbjct: 478 SNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAVVKLKPC---WTITQIIQGALPA 534
Query: 487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
G R+L+K S V+K D ++++ + +++V+SI KGP L+F ++LQPLLME
Sbjct: 535 ALTCEGGRFLVKDSTVIKLDLAKESVQASFSDLVSSILCVKGPGGALQFLNALQPLLMEY 594
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLV 606
L DGFSVSL+DF++ K L + K IQ +L ++++ V+++++N+++ VK +
Sbjct: 595 LLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKSQFVEMRVDNNLKDVKQQI 654
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ F+++SS LG LID KS+ ++SKVVQQ GF+GLQL GKFYS LVED S F +P
Sbjct: 655 SDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKFYSSRLVEDCFSSFVDKHP 714
Query: 667 --MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ +P YGL++ +FHGL+PYEE+ HSISTRE IVRSSRGL+EPGTLFKNLMA+L
Sbjct: 715 PIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFKNLMAIL 774
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLAATAMSNPAYKAVLD 783
RDVVICYDGTVRN+CSNSI+Q Y +A S GEPVGVLAATA+SNPAYKAVLD
Sbjct: 775 RDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTPGEPVGVLAATAISNPAYKAVLD 834
Query: 784 SSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRV 843
+S S+N SW MKEIL +VS+ ND DR+VIL+LNDC C +K+C+E+AA V+N+LKRV
Sbjct: 835 ASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCPKKFCKEKAAIAVQNRLKRV 894
Query: 844 SLKDAAVEFLIEYKKPEIISDDE---GLVGHIHLNKILLEDLRISMHDILPKCQETLKSF 900
+L+D A + IEY K + E LVGHIHL K L+ + +S DIL KCQE S
Sbjct: 895 TLEDCATDICIEYHKQILDGSSEATPALVGHIHLEKARLDMINVSTEDILQKCQEV--SL 952
Query: 901 CKKKKMKKVVQFFKNTSLSISECCSFQQSCAD-KRSNMPCLMFVLRGA----SDSYLDKL 955
KK + FK + S +C Q+ D K +PCL F S+S +++
Sbjct: 953 KHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDGKLPKVPCLQFSFSEDIPMLSES-VERA 1011
Query: 956 SGVLANMIYPVLLETIIKEN--------WWV---RQRLSASVTMVAKGVLKEHLILLANS 1004
VLAN + VLL+TIIK + WV Q + V+KG +++ N
Sbjct: 1012 VSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKNTRKVSKGEPTVEIVVEKNE 1071
Query: 1005 MTCAGD 1010
+ GD
Sbjct: 1072 ASKQGD 1077
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 147/254 (57%), Gaps = 13/254 (5%)
Query: 978 VRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1037
+ QRLS ++ VAKG+LK+HLIL+ANSMTC G+L GFN+GGY+A R+L VQVPFTE+TL
Sbjct: 1119 IVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFTESTL 1178
Query: 1038 FMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVY 1097
F P KCFEKAAEK H+D L VV++CSWGKH A+GTGS F +LW + N++ G +Y
Sbjct: 1179 FTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGLY 1238
Query: 1098 DFLHMVRSSTGIEELDTGCLGEEVDGL-EDEF--DWSLSPEHNLCSDKPVFEDLVEDQ-- 1152
DFL MVR+ +E ++VD L ED D LSPE N P FED E Q
Sbjct: 1239 DFLAMVRTD---QEKARYTFLDDVDYLVEDNAMDDICLSPELNGTHGVPTFEDNFEHQDT 1295
Query: 1153 ----SWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEK 1208
SW + NA+W+ A S D W + +G G SS D
Sbjct: 1296 QNGNSWENGTKANASWEQNASAGNDS-DNWGGWSNAAAAADTGAAKPADQGNSSWDVPAT 1354
Query: 1209 AGSPSRKPSGWGTE 1222
A + S GWG E
Sbjct: 1355 AENDSTDWGGWGNE 1368
>gi|2088656|gb|AAB95288.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
Length = 888
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/888 (59%), Positives = 657/888 (73%), Gaps = 50/888 (5%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASI-SDCSISHASQ----------------- 42
MEE ++S IL+G+IVGI F LA+ EI I ++ Q
Sbjct: 1 MEEESTSEILDGEIVGITFALASHHEILPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKG 60
Query: 43 ----LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPI---YHPSHISELKLTMY 95
LA+ LG+ E E+ S + Y+EL +P P + L+ Y
Sbjct: 61 TSGGLADRLLGVCCE----EASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGY 116
Query: 96 AFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCL 155
+ +A+ EVKE+L+RIPEE+RKKL KG+ PQ+GYILEYLPVPPNCL
Sbjct: 117 RYGSDYTRPLLAR-------EVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCL 169
Query: 156 SVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE 215
SVP+ SDG STMS D S LK VLK+V I+SSRSG NFES + E++++ V YL+
Sbjct: 170 SVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQ 229
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTK-AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
VRGTAK++R++D R+GVS+ +S++ AW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE
Sbjct: 230 VRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNE 289
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQ 334
+G+P EIAQRITFEERV+VHN YLQ+LVD+KLCL+Y+ GS++YSLR+GSKGHT L+PGQ
Sbjct: 290 VGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQ 349
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
VVHRR+MDGD VFINRPPTTHKHSLQAL VYVH+D+TVKINPL+C PLSADFDGDC+HLF
Sbjct: 350 VVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLF 409
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
YPQSL+AKAEV+ELFSVEKQLLSSH G L LQ+ +D+LLSL+VM ++ FLDKA QQLAM
Sbjct: 410 YPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAM 469
Query: 455 FALSPLPRPALSK-ARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIP 513
+ LP PAL K ++ WT QILQ P GDR+L+ S++LK DF D +
Sbjct: 470 YGSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMG 529
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ--- 570
S+INEIVTSIF EKGP+E L FFDSLQPLLME+LFA+GFS+SLED S+S+A + I
Sbjct: 530 SIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLI 589
Query: 571 -KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
+EI + S L R+S ++E LQ+EN I VK + A F+LKS ++ LID KS+SA++
Sbjct: 590 IREISPMVSRL--RLSYRDE---LQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAIT 644
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
K+VQQ GFLGLQLSD+ KFY+KTLVED+A +R Y + + +G++KGCFFHGLDP
Sbjct: 645 KLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISS--SGDFGIVKGCFFHGLDP 702
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
YEEM HSI+ REVIVRSSRGL+EPGTLFKNLMAVLRD+VI DGTVRN CSNS+IQF Y
Sbjct: 703 YEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYG 762
Query: 750 VNARKSH-SLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNND 808
V++ + H LF AGEPVGVLAATAMSNPAYKAVLDSSP+SN+SWELMKE+LLC+V+F N
Sbjct: 763 VDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNT 822
Query: 809 PIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEY 856
DRRVILYLN+C CG+++CQE AA V+N+L +VSLKD AVEFL+E+
Sbjct: 823 TNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEH 870
>gi|222622188|gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/744 (56%), Positives = 556/744 (74%), Gaps = 7/744 (0%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
E +LK+IPEET++KLA +GY Q GY+++YLPVPPNCL +P+ +DG S MS D+SI++
Sbjct: 185 EALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISL 244
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
LKKVL+++E I+ SR+G+PNFES EVES DLQL++ QY+ +RGT + +D RF +S D
Sbjct: 245 LKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTD 304
Query: 236 PNS-TTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
P++ +TK WLEKMRTLFI KGSGFSSRSV+TGD Y V+ IG+P E+A+RITFEE+V
Sbjct: 305 PSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDI 364
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N+N LQE+VD LCLTY DG ++Y++ GSKGHT L+ GQ + RRI+DGD VF+NRPP+T
Sbjct: 365 NLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPST 424
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQA VYVH+DHTVKINPLIC P +ADFDGDC+H++YPQSLAAKAE LELFSVEKQ
Sbjct: 425 HKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQ 484
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARW 474
L SSH+G +NLQL +D+LL+LK M + L K QLAM LP PA+ K++ W
Sbjct: 485 LTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSK--PYW 542
Query: 475 TALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
T QI+Q LP S GD+++++ S ++K D D++++ + +++V S KGP E L+
Sbjct: 543 TISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPGEALQ 602
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ 594
F + LQPLLME + DGFSVSL+DF++ K L QK I+ +L +N++V+++
Sbjct: 603 FLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVEMR 662
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
++N+++ +K ++ F++K S LG LID KSDS+VSKVVQQ GF+GLQL GKFYS+ LV
Sbjct: 663 VDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRRLV 722
Query: 655 EDIASHFERIYPM--DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
ED F +P + + P A YGL++ +FHGL+PYEE+ H+ISTRE IVRSSRGL+E
Sbjct: 723 EDCYYTFVNKHPAVREEHSPEA-YGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTE 781
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLAAT 771
PGTLFKNLMA+LRDVVICYDGTVRNVCS SIIQ +Y +A S GEPVGVLAAT
Sbjct: 782 PGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVGVLAAT 841
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
A+SNPAYKAVLD+S S+N SWE MKEIL + ND DR+VIL+LNDC C +K+C+E+
Sbjct: 842 AISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEK 901
Query: 832 AAYMVKNQLKRVSLKDAAVEFLIE 855
AA V+ L+R++L+D A + IE
Sbjct: 902 AAIAVQGCLRRITLEDCATDICIE 925
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 146/253 (57%), Gaps = 12/253 (4%)
Query: 978 VRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1037
V QRLS +V MVAK VLK+HL+L+ANSMT G+L GFN+ GYKA RSL VQVPFTE+TL
Sbjct: 1192 VVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTL 1251
Query: 1038 FMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVY 1097
P KCFEKAAEK H+D+L VV++CSWGKH A GTGS F +LW + N++ G +Y
Sbjct: 1252 ITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLY 1311
Query: 1098 DFLHMVRSSTGIEELDTGCLGEEVDGL--EDEFDWSLSPEHNLCSDKPVFEDLVEDQ--- 1152
D+L +VR+ EE ++VD L E+E D LSPE + +P+F+D +E+Q
Sbjct: 1312 DYLALVRTD---EEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQ 1368
Query: 1153 ---SWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1209
SW NA+W+ S DKW + +G G S D
Sbjct: 1369 NNSSWDNGTTTNASWEQNGSAGNDS-DKWGGWNDAAAGADTGVTKPANQGNSCWDVPATV 1427
Query: 1210 GSPSRKPSGWGTE 1222
S GWGTE
Sbjct: 1428 EKSSSDWGGWGTE 1440
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Query: 1 MEENTSST-ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE+ S+ + EG I I+ L+T+ EI T SI+DC ++H SQL NPFLGLPLE GKCES
Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
CG SE GKCEGHFGYIELP+PIYHP H++EL+
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELR 92
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 867 GLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSF 926
LVGHIHL++ LE + IS DIL KCQE + KKK + FKN + S +C
Sbjct: 996 ALVGHIHLDRAHLERINISTEDILQKCQEVSGKYGKKK--GHLSNLFKNITFSTCDCLFT 1053
Query: 927 QQSCADKRSNMPCLMFVLRGASDSYL-----DKLSGVLANMIYPVLLETIIK 973
Q+ K +PCL F + SD+ + ++ VLA+ + VLL TIIK
Sbjct: 1054 QKLVDGKLPKLPCLQFFV---SDNMIVSESVERAVSVLADSLCGVLLNTIIK 1102
>gi|222619929|gb|EEE56061.1| hypothetical protein OsJ_04874 [Oryza sativa Japonica Group]
Length = 1528
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/1302 (38%), Positives = 702/1302 (53%), Gaps = 220/1302 (16%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISD-----CSISHASQL-ANPFLGLPLEFGKCES 59
++ I E I I + + +EI A + I+H SQL NP+LGLPL+ G C+S
Sbjct: 12 TAMIPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGSCQS 71
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK--LTMYAFQ-LQIKND------------ 104
CG++ +CEGHF +IELP+PI+HPSH++EL L + + L+IKN
Sbjct: 72 CGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRCLKIKNRKELPPLCVAEVK 131
Query: 105 -----------------------------GVAQRLLSSCC-----EVKEMLKRIPEETRK 130
G R S C EV+ ++K+IPEETR+
Sbjct: 132 KSNGARGLELRAPIKKELEEGFWSFLDQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRR 191
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
L+ +GY PQDG+IL YL VPPNCL V ++ DG + S S +L+K L++++ IR SR
Sbjct: 192 WLSVRGYIPQDGFILSYLCVPPNCLRVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSR 251
Query: 191 SGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTL 250
G+ N + +V ++DLQ+ V Y+ + GT K D + P T W +KM+TL
Sbjct: 252 IGSSNIQVDQV-ADDLQVDVANYINLGGTTKGHGDDT----FTSQP--TAMQWKQKMKTL 304
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT 310
FI K S FSSR VITGD Y +N +GVP E+A+R++ EE+V HNI LQ++++ LCLT
Sbjct: 305 FISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNIAQLQDMMNKGLCLT 364
Query: 311 YSDGSS-SYSLREG----SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
Y+D +S +YSL G +K HT L+ G++V+RR+ DGD VF+NRPP+T KHS++A V
Sbjct: 365 YTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRPPSTDKHSVEAFYVQ 424
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
VH+DHT+KINPLIC PL ADFDGDC+ +FYP+SL+A+AE EL++V+KQL+SSHNG LN
Sbjct: 425 VHNDHTIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQLVSSHNGKLNF 484
Query: 426 QLATDALLSLKVMFKKYFLDKAFTQQL-AMFALSPLPRPALSKARCSARWTALQILQSVL 484
Q D L+LK+M + + ++ Q AMF+ P+ L WT QIL++
Sbjct: 485 QFKNDFSLALKIMCGREYSEREANQITNAMFSSGMYPQKPLIGG---PYWTFPQILETT- 540
Query: 485 PPGFDSCGDRYLIKKSEVLKGD-FDRDTIPSV-INEIVTSIFFEKGPEEVLEFFDSLQPL 542
K + + D DR+++ ++ ++SI KGP E EF + LQPL
Sbjct: 541 -------------KSNAITLADHLDRESVGALATGTTISSILSTKGPREATEFLNLLQPL 587
Query: 543 LMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHV 602
LME+L D FS++L DF++ L IQ N ++L N R
Sbjct: 588 LMESLLIDCFSINLGDFTVPSPILEAIQ-----------------NNPLEL---NKYREP 627
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED-IASHF 661
M FI SS +G L+D KSDS ++KVV+Q GFLG QL G+ YS LVED ++
Sbjct: 628 IM---DFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSL 684
Query: 662 ERIY-PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
R + P +YG ++ +HGL+PYE + HSI RE I+R+S+GL EPG+LFKN+
Sbjct: 685 HRCCGSTNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNM 744
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA 780
M+ LRDV CYDG++R N ++QF +R + + G+PVG+LAATA++N AYKA
Sbjct: 745 MSRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTPGDPVGILAATAVANAAYKA 800
Query: 781 VLDSSPSSNN--SWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKN 838
VL +P+ NN SW+ MKE+LL R S D R+VILYLN C C + C ERA ++
Sbjct: 801 VL--APNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSCENE-CMERA-LTIRA 856
Query: 839 QLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLK 898
L+R+ L+D E I+Y++ + LVGHIHL+K L + M +L KCQET +
Sbjct: 857 CLRRIKLEDCTTEISIKYQQ-QATQAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFR 915
Query: 899 ----------------------SFCK------KKKMKKVVQFF------KNTSLSISECC 924
S C KK +QFF KN S S
Sbjct: 916 NNIKKKGSMREILKTVTFISSTSLCDQHTDDDKKFQVSCLQFFLPGSITKNISESTERVI 975
Query: 925 SFQ-----------------------------------QSCADKRSNMPCLMFVLRGASD 949
F QS ++ L + A+
Sbjct: 976 DFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEAALEITVEEAAA 1035
Query: 950 SYLDKLSGVLANMIYPV--LLETIIKENW---WVRQRLSASVTMVAKGVLKEHLILLANS 1004
+ GV N PV L++T + VRQ LS SV M+ K VL+EHL +A+S
Sbjct: 1036 AESGNAWGVAMNACIPVMDLIDTTRSMPYDIQQVRQYLSKSVGMITKSVLQEHLTTVASS 1095
Query: 1005 MTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACS 1064
MTC GDL GFN+ GYKA +SL VQ PF EATL +CFEKAA K ++D L +VV+ACS
Sbjct: 1096 MTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSIQCFEKAAAKAYSDQLGNVVSACS 1155
Query: 1065 WGKHVAVGTGSRFDLLWQTENEEFNQD--DGVDVYDFLHMVRSSTGIEE----------L 1112
WG + +GTGS F++LW EN ++ G +YDFL V ++ ++
Sbjct: 1156 WGNNAEIGTGSAFEILWNDENMSSSKSILGGYGLYDFLEAVETTGATKDKAIVPHNYCLY 1215
Query: 1113 DTGCLGEEVDGLE--DEFDWSLSPEHNLCSDKPVFEDLVEDQ 1152
D C+ E+ LE ++ W +DKP E L+E +
Sbjct: 1216 DVDCIPEDKVCLEENNQITW---------TDKPKAEFLMESE 1248
>gi|218189797|gb|EEC72224.1| hypothetical protein OsI_05331 [Oryza sativa Indica Group]
Length = 1465
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1211 (39%), Positives = 679/1211 (56%), Gaps = 165/1211 (13%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISD-----CSISHASQL-ANPFLGLPLEFGKCES 59
++ I E I I + + +EI A + I+H SQL NP+LGLPL+ G
Sbjct: 75 TAMIPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGDAIE 134
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK--LTMYAFQ-LQIKNDGVAQRLLSSCCE 116
+CEGHFG+IELP+PI+HPSH++EL L + + L+IKN +
Sbjct: 135 -------ECEGHFGFIELPMPIFHPSHVTELSQILNLICLRCLKIKNR-----------K 176
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
V+ ++K+IPEETR+ L+ +GY PQDG+IL YL VPPNCL V ++ DG + S S +L
Sbjct: 177 VQNIIKKIPEETRRWLSVRGYIPQDGFILSYLCVPPNCLRVSNVLDGNTFSCSGTSTNLL 236
Query: 177 KKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDP 236
+K L++++ IR SR G+ N + +V ++DLQ+ V Y+ + GT K D + P
Sbjct: 237 RKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTKGHGDDT----FTSQP 291
Query: 237 NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
T W +KM+TLFI K S FSSR VITGD Y +N +GVP E+A+R++ EE+V HNI
Sbjct: 292 --TAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNI 349
Query: 297 NYLQELVDNKLCLTYSDGSS-SYSLREG----SKGHTFLRPGQVVHRRIMDGDTVFINRP 351
LQ++++ LCLTY+D +S +YSL G +K HT L+ G++V+RR+ DGD VF+NRP
Sbjct: 350 AQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRP 409
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+T KHS++A V VH+DHT+KINPLIC PL ADFD DC+ +FYP+SL+A+AE EL++V
Sbjct: 410 PSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDDDCVQIFYPRSLSARAEAKELYTV 469
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQL-AMFALSPLPRPALSKARC 470
+KQL+SSHNG LN Q D L+LK+M + + ++ Q AMF+ P+ L
Sbjct: 470 DKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSEREANQITNAMFSSGMYPQKPLIGG-- 527
Query: 471 SARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGD-FDRDTIPSV-INEIVTSIFFEKG 528
WT QIL++ K + + D DR+++ ++ ++SI KG
Sbjct: 528 -PYWTFPQILETT--------------KSNAITLADHLDRESVGALATGTTISSILSTKG 572
Query: 529 PEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQN 588
P E EF + LQPLLME+L DGFS++L DF++ L I QN
Sbjct: 573 PREATEFLNLLQPLLMESLLIDGFSINLGDFTVPSPILEAI-----------------QN 615
Query: 589 ELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
++L N R M FI SS +G L+D KSDS ++KVV+Q GFLG QL G+
Sbjct: 616 NPLEL---NKYREPIM---DFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRL 669
Query: 649 YSKTLVED-IASHFERIY-PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
YS LVED ++ R + P ++G ++ +HGL+PYE + HSI RE I+R+
Sbjct: 670 YSSRLVEDCLSKSLHRCCGSTNCCNPLEEHGTVRSSIYHGLNPYEALLHSICEREKIMRA 729
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVG 766
S+GL EPG+LFKN+M+ LRDV CYDG++R N ++QF +R + + G+PVG
Sbjct: 730 SKGLVEPGSLFKNMMSRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTPGDPVG 785
Query: 767 VLAATAMSNPAYKAVLDSSPSSNN--SWELMKEILLCRVSFNNDPIDRRVILYLNDCGCG 824
+LAATA++N AYKAVL +P+ NN SW+ MKE+LL R S D R+VILYLN C C
Sbjct: 786 ILAATAVANAAYKAVL--APNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSCE 843
Query: 825 RKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRI 884
+ C ER A ++ L+R+ L+D E I + +DD+ ++ R+
Sbjct: 844 NE-CMER-ALTIRACLRRIKLEDCTTEISINTSLCDQHTDDD-------------QEFRV 888
Query: 885 S-MHDILPKCQETLKSFCKK--KKMKKVVQFFKNTSLSI--------------------- 920
S + LP S K + ++V+ F N I
Sbjct: 889 SCLQFFLP------ASITKNISESTERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIE 942
Query: 921 SECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPV--LLETIIKENW-- 976
E + QS ++ L + A+ + GV + PV L++T +
Sbjct: 943 PESTFWVQSSGAEQKGEVALEITVEKAAAAESGNAWGVAMDACIPVMDLIDTTRSMPYDI 1002
Query: 977 -WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEA 1035
VRQ LS SV M+ K VL+EHL +A+SMTC GDL GFN+ GYKA +SL VQ PF EA
Sbjct: 1003 QQVRQYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEA 1062
Query: 1036 TLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD--DG 1093
TL +CFEKAA K ++D L +VV+ACSWG + +GTGS F++LW EN ++ G
Sbjct: 1063 TLSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNTEIGTGSAFEILWNDENMSSSKSILGG 1122
Query: 1094 VDVYDFLHMVRSSTGIEE----------LDTGCLGEEVDGLE--DEFDWSLSPEHNLCSD 1141
+YDFL V ++ ++ D C+ E+ LE ++ W +D
Sbjct: 1123 YGLYDFLEAVETTGATKDKAIVPHNYCLYDVDCIPEDKVCLEENNQITW---------TD 1173
Query: 1142 KPVFEDLVEDQ 1152
KP E L+E +
Sbjct: 1174 KPKAEFLMESE 1184
>gi|68300841|gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/595 (60%), Positives = 450/595 (75%), Gaps = 9/595 (1%)
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFL 444
DFDGDC+HLFYPQSL+AKAEVLELF+V KQLLSSH GN N QLATD+LLSLK+MF YF
Sbjct: 1 DFDGDCVHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNSQLATDSLLSLKLMFSHYFF 60
Query: 445 DKAFTQQLAMFALSPLPRPALSKARCS-ARWTALQILQSVLPPGFDSCGDRYLIKKSEVL 503
DKA QQLAMF LP A+ R S A WT LQIL + LP GFDSCG+ + I KS+ L
Sbjct: 61 DKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAALPDGFDSCGETHTIGKSQFL 120
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
D+ RD I S++N+++TSI+F KGP +VL+FF+SLQPLLMENL +GFS+SL DF ++K
Sbjct: 121 GIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLMENLCTEGFSISLRDFYMTK 180
Query: 564 AALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSK 623
A IQ+ IQ + LL+H S+ NE V++Q+E+H+R+ K+ V F+LKSS +G LIDSK
Sbjct: 181 AVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKLPVIDFVLKSSGMGVLIDSK 240
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S+SA +KVVQQ GFLGLQ+SDRGKFY TLV D+A F++ YP P+ ++GL++ C
Sbjct: 241 SESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQLFQKKYPSVGTNPSEEFGLVRSCL 300
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
F+GLDPY+ M HSIS+REVIVRS+RGL+EPGTLF NLMA+LRDVVICYDGTVRNV SNSI
Sbjct: 301 FYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAILRDVVICYDGTVRNVSSNSI 360
Query: 744 IQFDYAVNARKS-HSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCR 802
IQF+Y + + S F AG+PVGVLAATAMSNPAYKA LDSSPSSN+SWE+MKEILLC
Sbjct: 361 IQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSPSSNSSWEMMKEILLCG 420
Query: 803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEII 862
VSF ND DRRVILYLNDCGC R YC+E+AAY+VKN L +V LKDAA EFLIEY +
Sbjct: 421 VSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAG 480
Query: 863 SDDE----GLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSL 918
++ GL+GHI LN+ LE+L IS+ ++ +CQE + SF KKK+ + FK L
Sbjct: 481 YENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNL---FKRIVL 537
Query: 919 SISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK 973
S+SE CSF + K N PCL F ASD +L+++S +LA+MI P+LL+T+IK
Sbjct: 538 SVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIXPILLDTVIK 592
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 172/278 (61%), Gaps = 30/278 (10%)
Query: 981 RLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMP 1040
RLS SVTMV KGVLK+HL+LLANSMTCAG+LVGFN+GG KALSRSLNVQ+PFTEATLF P
Sbjct: 685 RLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTP 744
Query: 1041 RKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFL 1100
RKCFE+AAEK H D+LSS+VA+CSWGKHVAVGTGSRF++L T N E+N D DVY FL
Sbjct: 745 RKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFL 804
Query: 1101 HMVRSSTGIEELDTGCLGEEVDGLEDEFDWS--LSPEHNLCSDKPVFEDLVE---DQSWL 1155
H+VR+++ E T CLG E+D LE++ D LSP + S+ P FED E +++
Sbjct: 805 HLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLD 864
Query: 1156 ENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTE---GAWGKSSDD-----KLE 1207
E K + W+ + S W+ G + G +WGK D+ +
Sbjct: 865 EGKPSGSAWEEASSGSVKSGGSWDMAGKTQNGAEEGVNQSDSWSSWGKKVDEPENNRQQS 924
Query: 1208 KAGSPSRKPSGWG-----------------TEASWGES 1228
+G S S WG +E+SWG++
Sbjct: 925 GSGEQSGSWSPWGRRWKKMVVLGDEPKQLNSESSWGKA 962
>gi|57900162|dbj|BAD88247.1| putative DNA-directed RNA polymerase II largest subunit [Oryza
sativa Japonica Group]
Length = 1568
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1043 (40%), Positives = 602/1043 (57%), Gaps = 137/1043 (13%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISD-----CSISHASQL-ANPFLGLPLEFGKCES 59
++ I E I I + + +EI A + I+H SQL NP+LGLPL+ G C+S
Sbjct: 12 TAMIPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGSCQS 71
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK--LTMYAFQ-LQIKND------------ 104
CG++ +CEGHF +IELP+PI+HPSH++EL L + + L+IKN
Sbjct: 72 CGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRCLKIKNRKELPPLCVAEVK 131
Query: 105 -----------------------------GVAQRLLSSCC-----EVKEMLKRIPEETRK 130
G R S C EV+ ++K+IPEETR+
Sbjct: 132 KSNGARGLELRAPIKKELEEGFWSFLDQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRR 191
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
L+ +GY PQDG+IL YL VPPNCL V ++ DG + S S +L+K L++++ IR SR
Sbjct: 192 WLSVRGYIPQDGFILSYLCVPPNCLRVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSR 251
Query: 191 SGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTL 250
G+ N + +V ++DLQ+ V Y+ + GT K D + P T W +KM+TL
Sbjct: 252 IGSSNIQVDQV-ADDLQVDVANYINLGGTTKGHGDDT----FTSQP--TAMQWKQKMKTL 304
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT 310
FI K S FSSR VITGD Y +N +GVP E+A+R++ EE+V HNI LQ++++ LCLT
Sbjct: 305 FISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNIAQLQDMMNKGLCLT 364
Query: 311 YSDGSS-SYSLREG----SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
Y+D +S +YSL G +K HT L+ G++V+RR+ DGD VF+NRPP+T KHS++A V
Sbjct: 365 YTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRPPSTDKHSVEAFYVQ 424
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
VH+DHT+KINPLIC PL ADFDGDC+ +FYP+SL+A+AE EL++V+KQL+SSHNG LN
Sbjct: 425 VHNDHTIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQLVSSHNGKLNF 484
Query: 426 QLATDALLSLKVMFKKYFLDKAFTQQL-AMFALSPLPRPALSKARCSARWTALQILQSVL 484
Q D L+LK+M + + ++ Q AMF+ P+ L WT QIL++
Sbjct: 485 QFKNDFSLALKIMCGREYSEREANQITNAMFSSGMYPQKPLIGG---PYWTFPQILETT- 540
Query: 485 PPGFDSCGDRYLIKKSEVLKGD-FDRDTIPSV-INEIVTSIFFEKGPEEVLEFFDSLQPL 542
K + + D DR+++ ++ ++SI KGP E EF + LQPL
Sbjct: 541 -------------KSNAITLADHLDRESVGALATGTTISSILSTKGPREATEFLNLLQPL 587
Query: 543 LMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHV 602
LME+L D FS++L DF++ L I QN ++L N R
Sbjct: 588 LMESLLIDCFSINLGDFTVPSPILEAI-----------------QNNPLEL---NKYREP 627
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED-IASHF 661
M FI SS +G L+D KSDS ++KVV+Q GFLG QL G+ YS LVED ++
Sbjct: 628 IM---DFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSL 684
Query: 662 ERIY-PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
R + P +YG ++ +HGL+PYE + HSI RE I+R+S+GL EPG+LFKN+
Sbjct: 685 HRCCGSTNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNM 744
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA 780
M+ LRDV CYDG++R N ++QF +R + + G+PVG+LAATA++N AYKA
Sbjct: 745 MSRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTPGDPVGILAATAVANAAYKA 800
Query: 781 VLDSSPSSNN--SWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKN 838
VL +P+ NN SW+ MKE+LL R S D R+VILYLN C C + C ER A ++
Sbjct: 801 VL--APNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSCENE-CMER-ALTIRA 856
Query: 839 QLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLK 898
L+R+ L+D E I+Y++ + LVGHIHL+K L + M +L KCQET +
Sbjct: 857 CLRRIKLEDCTTEISIKYQQ-QATQAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFR 915
Query: 899 SFCKKK----KMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYL-- 952
+ KKK ++ K V F +TSL C Q + DK+ + CL F L G+ +
Sbjct: 916 NNIKKKGSMREILKTVTFISSTSL-----CD-QHTDDDKKFQVSCLQFFLPGSITKNISE 969
Query: 953 --DKLSGVLANMIYPVLLETIIK 973
+++ + N I+P++L+T+IK
Sbjct: 970 STERVIDFMTNAIFPIILDTVIK 992
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 23/187 (12%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
Q LS SV M+ K VL+EHL +A+SMTC GDL GFN+ GYKA +SL VQ PF EATL
Sbjct: 1111 QYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSR 1170
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD--DGVDVY 1097
+CFEKAA K ++D L +VV+ACSWG + +GTGS F++LW EN ++ G +Y
Sbjct: 1171 SIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSILGGYGLY 1230
Query: 1098 DFLHMVRSSTGIEE----------LDTGCLGEEVDGLE--DEFDWSLSPEHNLCSDKPVF 1145
DFL V ++ ++ D C+ E+ LE ++ W +DKP
Sbjct: 1231 DFLEAVETTGATKDKAIVPHNYCLYDVDCIPEDKVCLEENNQITW---------TDKPKA 1281
Query: 1146 EDLVEDQ 1152
E L+E +
Sbjct: 1282 EFLMESE 1288
>gi|242060025|ref|XP_002459158.1| hypothetical protein SORBIDRAFT_03g046922 [Sorghum bicolor]
gi|241931133|gb|EES04278.1| hypothetical protein SORBIDRAFT_03g046922 [Sorghum bicolor]
Length = 1571
Score = 640 bits (1651), Expect = e-180, Method: Compositional matrix adjust.
Identities = 370/917 (40%), Positives = 547/917 (59%), Gaps = 72/917 (7%)
Query: 75 IELPIPIYHPSHISELKLTMYAF--QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKL 132
+EL +P+ E+ ++F Q G + R EV++++K+I E+TR +L
Sbjct: 154 LELKLPLKQ-----EVADGFWSFLDQFGFHTSGTSHRRPLHPKEVQDIMKKITEKTRARL 208
Query: 133 AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSG 192
A +GY QDG++++ + +PPNCL + ++ D + M S +L KVL+ +E I S
Sbjct: 209 AARGYNLQDGFVMDNMSIPPNCLQISNMLDENTEMCPPTSKGLLHKVLRTIEQIESLNIS 268
Query: 193 TPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
PN E++E+ ++DLQ+AV Y+ + G AK S+ V ++ P K W +KM+TLF+
Sbjct: 269 HPNIEARELGADDLQVAVADYMNMGGAAKVSQHVT----FTRQP--APKQWHKKMKTLFL 322
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K S ++ R+VITGD Y ++ +GVP EIA+R++ +E V +NI LQ++++ LCLTY+
Sbjct: 323 SKSSSYTCRAVITGDPYIGLDVVGVPDEIARRMSVQECVTNYNIARLQDMMNKGLCLTYT 382
Query: 313 D-GSSSYSL--REGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
D +++Y L ++G+K LR G+ V RR++DGD VF+N+PP+T HS+QAL V+VHDD
Sbjct: 383 DLNTNTYDLDGKKGNKKCIMLRVGETVDRRVLDGDLVFLNKPPSTDMHSIQALYVHVHDD 442
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
HT+KINPLICGPL ADFDGDC+H+F+P+S+ A+ E ELF+VEKQLL+SHN LN Q+
Sbjct: 443 HTIKINPLICGPLEADFDGDCVHIFFPRSVLARVEAAELFAVEKQLLNSHNAKLNFQIKN 502
Query: 430 DALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD 489
D LL+L++M + + K Q+AMF+ +P P C RWT QILQ+
Sbjct: 503 DYLLALRIMCDRSY-SKEKANQIAMFSSGMIP-PCNPWTICD-RWTIPQILQTT------ 553
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D I S +T+ + + I+TS EKGP E ++ + LQPLLME+L
Sbjct: 554 ---DALRIVPSH-------PNTVGASVTAIITSTLSEKGPREAIKLINLLQPLLMESLLM 603
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKF 609
DGFS+SL+D A M N+ + L+I+ + + F
Sbjct: 604 DGFSISLKDLDGQSA-------------------MQKANQSISLEIDKFSKS----IVDF 640
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
I SS LG L+D K+DSA+ +V+Q GFLG QL + YS LVED + E+
Sbjct: 641 IANSSALGLLVDPKNDSALMNLVEQVGFLGYQLQSTDRLYSNNLVEDCYNFLEKRSGSTK 700
Query: 670 NY-PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR-SSRGLSEPGTLFKNLMAVLRDV 727
Y P + + F++GL+PYEE+ HSIS RE I R SS+GL+E G LFKN+MA+LRDV
Sbjct: 701 CYDPPKGHDFVTSSFYNGLNPYEELLHSISVREKIERSSSKGLAEAGNLFKNMMAMLRDV 760
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
+CYDGT+R +NSI+QFD + S SL P G+ +G+LAAT +N AYKAVL +
Sbjct: 761 TVCYDGTMRTSYNNSIVQFD---STNVSSSLTP-GDSIGILAATVFANAAYKAVLVPNQK 816
Query: 788 SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 847
+ SW+ MKE+LL ID++ ILYLN C CG K+C E AA+ V++ LKR+ L+
Sbjct: 817 NMTSWDSMKEVLLTNACSKTGTIDQKAILYLNKCFCGLKFCSELAAHRVQSCLKRIKLEY 876
Query: 848 AAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMK 907
A+E I+Y++ E + LVGHIHL+K L + I+M +IL CQ+ + K +
Sbjct: 877 CAIEVSIKYQQ-EATQAAQCLVGHIHLDKEQLNWMEITMGNILQTCQKNVNKHVMKN--R 933
Query: 908 KVVQFFKNTSLSISECCSFQQSCADKRS-NMPCLMFVLRGASDSYLDKLSGV---LANMI 963
+++Q K T + SE C Q D+R+ + CL + AS + + S V + N I
Sbjct: 934 QLMQILKTTEIISSEYCLCGQDIGDERALQVSCLQCFIH-ASTTTVQPESNVIQMMTNTI 992
Query: 964 YPVLLETIIKENWWVRQ 980
+P+LL+T+IK + V++
Sbjct: 993 FPILLDTVIKGDPQVQE 1009
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 122/235 (51%), Gaps = 24/235 (10%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
Q LS +V MV K VL EHLI +A+SMTC G L GFN G KA +SL VQ PFTEATL
Sbjct: 1107 QHLSKAVGMVTKSVLMEHLITVASSMTCTGSLHGFNRSGSKATFQSLKVQAPFTEATLSR 1166
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD--DGVDVY 1097
P +CF K+AEK +D L SVV+ CSWG H A+GTGS F + W EN+ + + ++Y
Sbjct: 1167 PMQCFRKSAEKVDSDQLDSVVSTCSWGNHAAIGTGSAFKIHWNDENQSASNEILREYNLY 1226
Query: 1098 DFLHMVRSSTGIEE----------LDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFED 1147
DFL V E+ D G L E+ + EDE +DKP +
Sbjct: 1227 DFLEAVGRIGATEQKTDAPHSLCLYDVGQLPED-EVQEDEVVCFGGTSPISWTDKPKGDS 1285
Query: 1148 LVED-------QSWLENKQENAN---WDSEADCRKSSEDKWEKLGTSLEKPSSGW 1192
L+ D S ++ QE N W+S A R ++ ++ + ++P W
Sbjct: 1286 LLHDFMGRAGMWSTVQKHQEMQNKTKWNS-ASTRGQNKRQFTGQVYARKQPKHSW 1339
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 8 TILEGQIVGIRFGLATQKEICTASI-----SDCSISHASQLA-NPFLGLPLEFGK-CESC 60
T+ E I ++ + + +EI + S I+H SQL NP LGLPL+ G CESC
Sbjct: 12 TVPEAFIRRVKLSVTSNQEIVSTSPLFPSQDPIPITHCSQLQDNPSLGLPLQDGSTCESC 71
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
G ++ KC+GHFG+I+LP PIYHPSHI+EL
Sbjct: 72 GATQLDKCDGHFGFIKLPEPIYHPSHIAEL 101
>gi|413926574|gb|AFW66506.1| putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 554
Score = 634 bits (1635), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/556 (55%), Positives = 406/556 (73%), Gaps = 4/556 (0%)
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
MRTLFI KGSGFSSRSV+TGD Y + +G+P E+A+R+TFEE+V NIN LQ++VD
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQDVVDKG 60
Query: 307 LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
LCLTY DG ++Y++ GSKG+T L+ GQ + RRI+DGD VF+NRPP+THKHSLQA YV
Sbjct: 61 LCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
HDDHTVKINPL+CGP SADFDGDC+H++YPQSLAAKAE LELFSVE+QL+SSH+G +NLQ
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 427 LATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
L D+L+++K M L K QLAMF L PA+ K S WT QI+Q P
Sbjct: 181 LGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVIKPVPS--WTISQIVQGAFPA 238
Query: 487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
GD +L++ S +++ D ++++ ++V+SI EKGP+E L+F + L+PLLME
Sbjct: 239 NLTCQGDTHLVRDSTIIRLDLGKESVQDSFPDLVSSILREKGPKEALQFLNVLEPLLMEF 298
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLV 606
L DG S+SL DF++ KA L QK+I+ +L + ++ V+ ++EN++++VK +
Sbjct: 299 LLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCSTSQFVEFRVENNLKNVKQQI 358
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-ERIY 665
+ + K S LG LID K ++++SKVVQQ GF+GLQL GK YS+ LVED ++F +
Sbjct: 359 SDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRLVEDCFTNFVNKHL 418
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ YP YGL++ +FHGL+PYEE+ H+ISTRE ++RSSRGLSEPGTLFKNLMA+LR
Sbjct: 419 AIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRSSRGLSEPGTLFKNLMAILR 478
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARK-SHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
DVVICYDGTVRN+CSNSIIQ Y + S S+ P GEPVGVLAATA+SNPAYKAVLDS
Sbjct: 479 DVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPVGVLAATAISNPAYKAVLDS 538
Query: 785 SPSSNNSWELMKEILL 800
S S+N SWE MK ++L
Sbjct: 539 SQSNNASWESMKVVML 554
>gi|242064052|ref|XP_002453315.1| hypothetical protein SORBIDRAFT_04g003760 [Sorghum bicolor]
gi|241933146|gb|EES06291.1| hypothetical protein SORBIDRAFT_04g003760 [Sorghum bicolor]
Length = 554
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/556 (56%), Positives = 401/556 (72%), Gaps = 4/556 (0%)
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
MRTLFI KGSGFSSRSV+TGD Y + +G+P E+A+R+TFEE+V NIN LQE+VD
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQEVVDKG 60
Query: 307 LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
LCLTY DG ++Y++ GSKGHT L+ GQ + RRI+DGD VF+NRPP+THKHSLQA YV
Sbjct: 61 LCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
HDDHTVKINPL+CGP SADFDGDC+H++YPQSLAAKAE LELFSVE+QL+SSH+G +NLQ
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 427 LATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
L D L+++K M + L K QLAMF L PA+ K S WT QI+Q LP
Sbjct: 181 LGNDCLVAMKAMSDRTVLHKELANQLAMFVPFSLLAPAVMKPIPS--WTITQIVQGALPA 238
Query: 487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
GD +L++ S ++K D D++++ ++V+SI EKGP E L+F + L+PLLME
Sbjct: 239 KLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPREALQFLNVLEPLLMEF 298
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLV 606
L G S+SL DF++ KA L QK IQ +L + ++ V+L++EN+++ VK +
Sbjct: 299 LVLGGLSISLRDFNVPKALLEEAQKNIQNQSLVLEQSRCSTSQFVELRVENNLKSVKQQI 358
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-ERIY 665
+ ++ K S LG LID K +++++KVVQQ GF+GLQL GK YS+ LVED S F +
Sbjct: 359 SDYVGKFSGLGLLIDPKKEASMAKVVQQVGFVGLQLYREGKLYSRRLVEDCFSSFVNKHS 418
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ Y +GL++ +FHGL+PYEE+ H+I TRE ++RSSRGLSEPGTLFKNLMA+LR
Sbjct: 419 AIGDEYSPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGLSEPGTLFKNLMAILR 478
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARK-SHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
DVVICYDGTVRN+CSNSIIQ Y + S S P GEPVGVLAATA+SNPAYKAVLDS
Sbjct: 479 DVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLAATAISNPAYKAVLDS 538
Query: 785 SPSSNNSWELMKEILL 800
S S+N SWE MK + L
Sbjct: 539 SQSNNASWESMKVVKL 554
>gi|414875646|tpg|DAA52777.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 896
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/651 (42%), Positives = 392/651 (60%), Gaps = 69/651 (10%)
Query: 140 QDGYILEYLPVPPNCLSVPDISDGVSTM-SSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
+DGY+++ + VPPNCL V +I D + M D +L+K+L+ +E I+S ++
Sbjct: 202 EDGYVMDNMSVPPNCLHVSNILDDNTEMCPPDTPKGLLRKILRTIEQIKSLNIS----QT 257
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGF 258
+E+ ++DLQ+AVG Y+++ G A+ + V ++ P K W +KM+ LF+ K S +
Sbjct: 258 RELGADDLQVAVGDYMDMGGPAEVFQHVT----FTRQP--APKQWHKKMKALFLSKSSSY 311
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD-GSSS 317
S R+VITGD Y ++ +GVP E+A+R+T +E V +NI LQ++++ LCLTY+D +++
Sbjct: 312 SCRAVITGDPYIGLDVVGVPDEVARRMTVQECVTNYNIARLQDMMEKGLCLTYTDLNTNT 371
Query: 318 YSL--REGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKIN 375
Y L ++G+K R G+ V RR++DGD VF+NRPP+T HS+QAL V+VHDDHT+KIN
Sbjct: 372 YDLDGKKGNKKCIMPRVGETVERRVLDGDLVFLNRPPSTDMHSVQALYVHVHDDHTIKIN 431
Query: 376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
PLICGPL ADFDGDC+H+F P+S+ + E ELF+VEKQLL+SHN LN Q+ D LL+L
Sbjct: 432 PLICGPLGADFDGDCVHIFSPRSVPGRVEAAELFTVEKQLLNSHNAKLNFQIKNDYLLAL 491
Query: 436 KVM-FKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR 494
K+M + Y +KA Q+AMF+ S WT QILQ+
Sbjct: 492 KIMCVRSYSREKA--SQIAMFS---------SGMILPGDWTIPQILQTT----------- 529
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L ++ ++ + + I++S EKGP ++ + LQPLLME+L DGFS+
Sbjct: 530 ---DALRTLPSHPNKQSVGASVTAIISSTLSEKGPRGAIKLINLLQPLLMESLLMDGFSI 586
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
SL+ A M N+ L+ + L I+ SS
Sbjct: 587 SLKGLDGRCA-------------------MQKANQSSSLETDK----FNKLTVDSIVNSS 623
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNY-PT 673
LG L+D K DS + K+V+Q GFLG QL G+ YS LVED + ER Y P+
Sbjct: 624 ALGLLVDPKKDSTLKKLVEQIGFLGQQLQRTGRLYSSNLVEDCYNFLERCSGSTKCYDPS 683
Query: 674 AKYGLIKGCFFHGLDPYEEMTHSISTREVIVR-SSRGLSEPGTLFKNLMAVLRDVVICYD 732
+ + F++GL+PYEE+ HSIS RE I R SS+GL+E G LFKN+MA+LRDV +CYD
Sbjct: 684 KGHDFVTSSFYNGLNPYEELLHSISVREKIERSSSKGLAESGNLFKNMMAMLRDVTVCYD 743
Query: 733 GTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLD 783
GT+R CSNSI+QFD + S S+ P G+PVG+LAATA N AYKAVLD
Sbjct: 744 GTMRTSCSNSIVQFD---STNVSSSVTP-GDPVGILAATAFVNAAYKAVLD 790
>gi|115444283|ref|NP_001045921.1| Os02g0152800 [Oryza sativa Japonica Group]
gi|113535452|dbj|BAF07835.1| Os02g0152800, partial [Oryza sativa Japonica Group]
Length = 488
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/304 (64%), Positives = 249/304 (81%), Gaps = 1/304 (0%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
E +LK+IPEET++KLA +GY Q GY+++YLPVPPNCL +P+ +DG S MS D+SI++
Sbjct: 185 EALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISL 244
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
LKKVL+++E I+ SR+G+PNFES EVES DLQL++ QY+ +RGT + +D RF +S D
Sbjct: 245 LKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTD 304
Query: 236 PNS-TTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
P++ +TK WLEKMRTLFI KGSGFSSRSV+TGD Y V+ IG+P E+A+RITFEE+V
Sbjct: 305 PSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDI 364
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N+N LQE+VD LCLTY DG ++Y++ GSKGHT L+ GQ + RRI+DGD VF+NRPP+T
Sbjct: 365 NLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPST 424
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQA VYVH+DHTVKINPLIC P +ADFDGDC+H++YPQSLAAKAE LELFSVEKQ
Sbjct: 425 HKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQ 484
Query: 415 LLSS 418
L SS
Sbjct: 485 LTSS 488
Score = 134 bits (336), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Query: 1 MEENTSST-ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
MEE+ S+ + EG I I+ L+T+ EI T SI+DC ++H SQL NPFLGLPLE GKCES
Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
CG SE GKCEGHFGYIELP+PIYHP H++EL+
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELR 92
>gi|168027571|ref|XP_001766303.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
gi|162682517|gb|EDQ68935.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
Length = 1795
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 320/1098 (29%), Positives = 510/1098 (46%), Gaps = 168/1098 (15%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMS----SD 170
E +LK+IPE KL + +G I++ + +PPNC D +T + +D
Sbjct: 415 EALAILKKIPEGAIGKLGMNRLVARPEGLIMKCVLIPPNCTRTTDYKHVNNTTAVRFGTD 474
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKS-------S 223
L+K++ ++ IR +R+G +Q ES LQ+ +YL +G K+
Sbjct: 475 NVTRTLQKLVAEIVHIRKTRAGKATNRTQRDESTKLQILTAEYLREKGAPKAVPGKEPLK 534
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
RD + R QD + TK WL + + K F++++V+ GD + + +IG+P+ IAQ
Sbjct: 535 RDRNGRV-TKQDYHRWTKEWLSQN---VLGKSGNFTAKAVLAGDPFLGIEQIGIPWLIAQ 590
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG---------SKGHTFLRPGQ 334
++T ER + N LQE V+ L +++++ R SK ++ G
Sbjct: 591 KLTLPERASQWNHTKLQEYVNVSQKLQQESENTAHATRVERNEVVYQVLSKTSLKVQIGD 650
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+VHR I DGD V++NRPP+ H+HSL AL V++H T+ +NPLIC P SADFDGD H+F
Sbjct: 651 IVHRHIQDGDYVYVNRPPSVHRHSLVALKVHIHHQPTITVNPLICPPFSADFDGDIFHIF 710
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLA 453
PQSL A AE+ +L +V++Q++S H G L+L D LL+ ++ KK FLDKA QL
Sbjct: 711 APQSLQAIAELDQLMAVKQQVISEHGGQPLLELTQDTLLAAHLLTSKKLFLDKATMDQLC 770
Query: 454 MFALSPLPRPALSKA-RCSARWTALQILQSVLPPGFD--SCGDRYLIKKSEVLKGDFDRD 510
++A P A+ K+ + WT Q+ LP F+ + + I+ E+++
Sbjct: 771 LWASKKPPEAAILKSPKGGPFWTGEQVFALTLPEDFELGAPQEEVFIQGGEIIRWRNGTK 830
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ + + ++ + GP ++++ ++ +L L GFS L DF ++ N
Sbjct: 831 LLRKGNDSVAAALCVQLGPVALVDYLNTATGVLHTWLQVQGFSTGLTDFQVTP----NRT 886
Query: 571 KEIQALYSLLYHRM--STQN-----ELVDLQIE--------------NHIRHVKM----- 604
K + L S+L S Q ++D +++ +IR ++
Sbjct: 887 KRQEMLKSILEESFLKSIQESCDFVRILDAKVQALDSDENPSPESLTKNIRFLEQVAREI 946
Query: 605 ----------LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+VAK+ + ++L +++S S ++ K++QQ +GLQL S +
Sbjct: 947 FQKRRSEAGRIVAKYAEQRNSLLMMVESGSKGSMEKLLQQIAGMGLQLYKGQHLLSYSSS 1006
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
A Y L++ GL++ GL E H I+ R I+R + +PG
Sbjct: 1007 RRPA----MTYSSQLDW-WEDMGLVRSSLVDGLKANELFRHVIADRTGILRKHVEVVQPG 1061
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-----------------HS 757
TLFK LM LRD+ I YDG+VR+ CS ++IQF Y AR S H
Sbjct: 1062 TLFKALMFFLRDLHIMYDGSVRSQCSKNLIQFCYG-GARGSLIPRKPTEETLAWEEDDHR 1120
Query: 758 LFP----AGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWE-----LMKEILLCRVSFNND 808
+P AGEPVGVLAA A+S PAY+ +LD +PS N ++ L++E L R +
Sbjct: 1121 RWPLSVLAGEPVGVLAAAAISQPAYELMLD-APSLNGPFKPRPLNLIQETLYPREKSSLK 1179
Query: 809 PIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPE-------- 860
P DR V+L L C C C ER V+ LKR++L+ A +EY E
Sbjct: 1180 PTDRCVVLRLVHCECTESLCLERRVLEVQAHLKRINLRMMAESVAVEYWNMEDSRAAGPS 1239
Query: 861 --IISDDEGLVGHIHLNKILLEDLRISMHDILPK-CQ---ETLKSFCKKKKMKKVVQFF- 913
++ +GHI+L++ ++ +++ DI+ + CQ +T KK KM ++ FF
Sbjct: 1240 GDLVRLGSPWLGHINLSQDAMKQCEVNVEDIVKRLCQKFSQTAGYVLKKNKMGQI--FFC 1297
Query: 914 --KNTSLSISECCSFQQSCADKRSNMPCLMFVLRGAS--DSYLDKLSGVLANM---IYPV 966
N S S C F P L +R S D Y L +L + I P
Sbjct: 1298 HSYNCSFSNGYCLHFS----------PSLPIKMRHCSNEDRYNKALLDLLLRIQETIIPG 1347
Query: 967 LLETIIK-----ENWWVRQRLSASVTMVAK-----GVLKEHLIL---------------- 1000
LL+ +K E V AS T + G L E L+L
Sbjct: 1348 LLDCTMKGDERIETVRVVCEGPASTTWHRRFAHCTGNLDEELVLEVYVSPSSSKSRGMAW 1407
Query: 1001 --LANSMTCAGDLVGFNSG---GYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDN 1055
+ + DLV +N + + SL ++V + + + P + AA + TD+
Sbjct: 1408 ASVKQACVSLKDLVDWNRSMPYSIQEIRCSLGIEVAY-QIVVQQPIRTLLGAAGRGATDS 1466
Query: 1056 LSSVVAACSWGKHVAVGT 1073
+ V+ C WGK +G+
Sbjct: 1467 VEGVMTNCIWGKEAPLGS 1484
Score = 46.6 bits (109), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
+IVG++FGL T EI S+ + + S L +P LGLP E +C +C + +C G
Sbjct: 33 AEIVGLQFGLTTANEIVGFSVQNRARDTLSSLIDPRLGLPAENERCATCSGTNINECTG 91
>gi|168027477|ref|XP_001766256.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
gi|162682470|gb|EDQ68888.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
Length = 2458
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 279/959 (29%), Positives = 442/959 (46%), Gaps = 136/959 (14%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPD- 159
+N+ V + + S E +LK+I + KL G + +G I++ +P+PPNC D
Sbjct: 553 ENEEVPKSHVLSPLEALSILKKISDTAIGKLGMNGLVARPEGLIMKCVPIPPNCTRTTDY 612
Query: 160 --ISDGVST-MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV 216
+S+ + +D L+ ++ ++ I+ +R+G Q E LQ+ +YL
Sbjct: 613 KYVSNTTAVRFGTDRVTRTLQNLVNEIGRIQRTRTGKIMKRGQRDEVKVLQVLTAEYLRE 672
Query: 217 RGTAKS-------SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAY 269
+G K+ +D + RF QD + TK W+ + ++ KG +++R+V+ GD
Sbjct: 673 KGAPKAVPGKEPLKKDRNGRF-TKQDDHRWTKDWISQN---YLGKGGNYTARAVVAGDPS 728
Query: 270 KRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYS--LRE----- 322
+ IGVP EIAQ++T ER N + LQE VD L G + +R
Sbjct: 729 LAIETIGVPLEIAQKLTVPERATKWNRSKLQEYVDRTQMLQQGSGKPGATRIVRNEEAFQ 788
Query: 323 --GSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
+ HT ++ G V+HR I DGD V++NRPP+ HKHSL AL V VH + INPL+C
Sbjct: 789 VWANSTHT-VQIGDVIHRNIQDGDFVYVNRPPSVHKHSLMALKVQVHYGLVLTINPLVCP 847
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF- 439
P +ADFDGD H+F PQSL A AE+ L +V +Q++S H G L L D LL+ ++
Sbjct: 848 PFNADFDGDIFHVFIPQSLQAIAELEHLMAVPQQIISDHGGQPLLGLTQDTLLAAYLLTS 907
Query: 440 KKYFLDKAFTQQLAMFALSPLPRPALSKA-RCSARWTALQILQSVLPPGFD--SCGDRYL 496
K +DKA QL ++AL P A+ K+ + WT QI LP + +
Sbjct: 908 SKLLVDKAGMDQLCLWALKQPPDAAIVKSPKGGPFWTGEQIFGLTLPTDLQVGAPHEEVF 967
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I+ EV++ ++ I ++ + GP ++ + ++ LL L GFS L
Sbjct: 968 IEGGEVIRWSNGAKSLRKDSEGIAAALCVQLGPVALVNYLNTATGLLHAWLQMHGFSTGL 1027
Query: 557 EDFSLSKAALWNIQKEIQALYSLLYHRMSTQN----ELVDLQIE---------------- 596
DF ++ + + QK +++++ Y + ++ ++D +++
Sbjct: 1028 ADFQVTSNSA-DRQKMLKSIFEDYYQKSIQESCDSVRILDAKVQAMGQEVISSPDHLTRN 1086
Query: 597 -------------NHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
N V+ +V K+ + + L ++ S S + K++QQ +GLQL
Sbjct: 1087 INFLEQAAQQTFRNRESEVESIVMKYAARDNGLLMMVRSGSKGSRGKLLQQIAGMGLQLY 1146
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
+G+ L + +L++ K GL++ GL+P E H I+ R VI
Sbjct: 1147 -KGQHL---LPFSGSRRSSMSNSSELDWWEDK-GLVRSSLVDGLNPSELFNHVIADRTVI 1201
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA----------VNAR 753
+R + +PGTLFK+LM LRD+ + YDG+VRN C +I+QF Y R
Sbjct: 1202 LRKHVEVVQPGTLFKSLMLFLRDLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKER 1261
Query: 754 KSHSLFP------------------------AGEPVGVLAATAMSNPAYKAVLDSSPSSN 789
S S F AGEPVGVLAATA+S PAY+ +LD +P N
Sbjct: 1262 LSRSQFEVVNPATPIVTWEEDDLKRWPLSILAGEPVGVLAATAISQPAYELMLD-APCLN 1320
Query: 790 NSWE------------------LMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
++ L +E L R PIDR I+ L +C C + C ER
Sbjct: 1321 GPFKPRPLELVQPFKALLTFSNLAQETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLER 1380
Query: 832 AAYMVKNQLKRVSLK----DAAVEFL----IEYKKP--EIISDDEGLVGHIHLNKILLED 881
V+ LK++SLK AVEF E P E + +GHI L+ L++
Sbjct: 1381 RVLAVQAHLKKISLKAIAESCAVEFWNMENFEVAGPSGEALRMGSPWLGHIKLSLNLMKQ 1440
Query: 882 LRISMHDILPKCQETLKSFCKKKKMKKVVQFF----KNTSLSISECCSFQQSCADKRSN 936
L++ + ++ + ++ K K + Q F N +S C F +K N
Sbjct: 1441 LQVDVELMVERLRQRFSGIIKNPKKHPMGQIFFCVSYNCGISNGLCLHFSPKLPNKMQN 1499
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 14 IVGIRFGLATQKEICTASISDC-SISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHF 72
+VG++ GLAT EI S+ + S L +P LGLP E +C +CG + +C GHF
Sbjct: 241 LVGLQIGLATTSEILGHSVIESRSKDTLISLVDPRLGLPAEDERCATCGGTNYDECTGHF 300
Query: 73 GYIELPIPIYHPSHI 87
+++L PI+HP++I
Sbjct: 301 AHVKLTQPIFHPNYI 315
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 978 VRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1037
+ QRL + A H+ L+A+ MT +GD GFN G++ +++S + PFTEA+
Sbjct: 1624 ISQRLGLVLDKTAPHTRSVHVKLVADMMTFSGDANGFNFSGFQDMNKSTGISAPFTEASF 1683
>gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
gi|300159834|gb|EFJ26453.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
Length = 1444
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 253/809 (31%), Positives = 384/809 (47%), Gaps = 116/809 (14%)
Query: 116 EVKEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMS---SD 170
+V +LK +P ET KL + P + Y ++ LPVPPN + ST D
Sbjct: 226 QVLRILKCLPRETTDKLRDEKLPSIPAEDYFIKSLPVPPNWMRY-------STNEFYFQD 278
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
+ LK +L +++ I +R E + ++Q A Q + + D D R+
Sbjct: 279 KTTKNLKHLLTKIKSIVYTRDEDKISLLTEQKVMEIQAAATQCIRANPLYGNVSDEDPRY 338
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G D S + L+ +R+L K G S+R+V+ GD ++ EIG+ IA + E
Sbjct: 339 GNVSD-ESKPLSGLQFLRSL-TGKYCGSSARAVVIGDPALKLEEIGISARIAAGLVVLET 396
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINR 350
V NI LQ N L G + R K LR G V+HR + DGD VF+NR
Sbjct: 397 VTSSNIISLQSYAYNNPGLKVVRGGEVCTGRSCKK----LRVGDVIHRSLKDGDQVFVNR 452
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
PPT HKH+L L V ++ +NPLIC PL ADFDGD + L+ PQSL +AEV EL +
Sbjct: 453 PPTFHKHALIGLKSKVIRNNVFAVNPLICSPLFADFDGDTLALYLPQSLQVRAEVAELVA 512
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-LPRPALSKA 468
+ KQL+SS G + L DALL +M +K FLDK QL M+ S +P PA+ K+
Sbjct: 513 LPKQLVSSQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAKVPVPAIVKS 572
Query: 469 -RCSARWTALQILQSVLPPGFDSCGD--RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
R S WT Q+ Q LP FDS D R +I++ E+L+ D+ + + ++T+I
Sbjct: 573 PRKSPLWTGKQLFQMTLPTTFDSESDDGRLIIRQGEILRTS-DKSSAWLGKDGLMTTICR 631
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL------ 579
GP+ LE D+ Q + ++ + GFSV L DF ++ A+ + E + L ++
Sbjct: 632 RYGPDRALEHLDTAQGIAVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKIS 691
Query: 580 -LYH----------------RMSTQNELV-------------------------DLQIEN 597
L H R S+ NE V + IE
Sbjct: 692 SLAHQIVSDSRFQVNSVSRPRCSSWNERVQPVTSANEATQQAAISAFQSTMKAFERTIEE 751
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
H+R + ++L ++++KS ++SK++QQ G LGLQL +G+F +
Sbjct: 752 HVRENS--------RENSLLRMVEAKSKGSLSKMMQQGGCLGLQLR-QGEF--------V 794
Query: 658 ASHFERIYPMDLNYPTAKY----------GLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
+ ++P + + Y GL++ F GLDP E HS+S+R+ S
Sbjct: 795 YHRVKSLFPRAVENESRGYLTSSELWKSMGLVESSFLDGLDPREFFIHSLSSRKGNDGSQ 854
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV 767
+ + + F+ LM+ ++D+ + YD T+R+ I QF Y A GEPVG+
Sbjct: 855 QRCA---SFFRFLMSYMKDIRVEYDNTIRSTHGGHIFQFSYGATAE-------PGEPVGL 904
Query: 768 LAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKY 827
LA TA+ P Y V+ SSP ++ + ++ IL SF + IDR V L L ++
Sbjct: 905 LAGTAVIEPVYDQVMSSSPQASTMLKTLQNILFSN-SFKD--IDRCVTLKLQKLPVQPEW 961
Query: 828 CQERAAYMVKNQLKRVSLKDAAVEFLIEY 856
A V++ LK V++ A + IEY
Sbjct: 962 I----ALQVQDFLKPVTIGMLASKIWIEY 986
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGT----SEPGK 67
G ++ + F T +EI AS+ + A L N GLP C SCG +
Sbjct: 20 GTLIALDFRPLTSEEIIRASVYEVKTVRA--LQNNRFGLPNLSDCCTSCGAKRTDASNSA 77
Query: 68 CEGHFGYIELPIPIYHPSHISEL-----KLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLK 122
C GH G+IELP+ +YH IS L ++ ++ + + K R LSS L+
Sbjct: 78 CPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSS-------LE 130
Query: 123 RIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
++ A G P E P C + V + + A + +L +
Sbjct: 131 QVASGVDAHQADIGAVPNGARAPEAEEDPEKCAVCSGPAAAVKKIFKKVGTANVPALLLE 190
Query: 183 VEIIRSSRSGTPNFES 198
++ P F+S
Sbjct: 191 IDGKVRREDIPPGFQS 206
>gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
gi|300160138|gb|EFJ26756.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
Length = 1438
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 252/805 (31%), Positives = 380/805 (47%), Gaps = 108/805 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMS---SD 170
+V +LK +P+ET KL + P + Y ++ LPVPPN + ST D
Sbjct: 223 QVLRILKCLPQETIDKLRDEKLPSIPAEDYFIKSLPVPPNWMRY-------STNEFYFQD 275
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
+ LK +L +++ I +R E + ++Q A Q + + D D R+
Sbjct: 276 KTTKNLKHLLTKIKSIVYTRDEDKISLLTEQKVMEIQAAATQCIRANPLYGNVSDEDPRY 335
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G D S + L +R+L K G S+R+V+ GD ++ EIG+ IA + E
Sbjct: 336 GNVSD-ESKPLSGLHFLRSL-TGKYCGSSARAVVIGDPALKLEEIGISARIAAGLVVLET 393
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINR 350
V NI +LQ N L G + R K L+ G V+HR + DGD VF+NR
Sbjct: 394 VTSSNIIFLQSYAYNNPGLKVVRGGEVCTARSCKK----LQVGDVIHRSLKDGDQVFVNR 449
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
PPT HKH+L L V ++ +NPLIC PL ADFDGD + L+ PQSL +AEV EL +
Sbjct: 450 PPTFHKHALIGLKSKVIRNNVFAVNPLICPPLFADFDGDTLALYLPQSLQVRAEVAELVA 509
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-LPRPALSKA 468
+ KQL+SS G + L DALL +M +K FLDK QL M+ S +P PA+ K+
Sbjct: 510 LPKQLVSSQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAEVPVPAIVKS 569
Query: 469 -RCSARWTALQILQSVLPPGFDSCGDR--YLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
R S WT Q+ Q LP FD D +I++ E+L+ D+ + + ++T+I
Sbjct: 570 PRKSPLWTGQQLFQMTLPTTFDWESDDGGLIIRQGEILRTS-DKSSAWLGKDGLMTTICR 628
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL-------YS 578
GP+ LE D Q + ++ + GFSV L DF ++ A+ + E + L S
Sbjct: 629 RYGPDRALEHLDIAQGIAVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKIS 688
Query: 579 LLYH----------------RMSTQNELV-------------------------DLQIEN 597
L H R ++ NE V + IE
Sbjct: 689 SLAHQIVSDPRFQVNSVSRPRCNSWNERVQPVTSVNEATQQAAISAFQSTMKAFERTIEE 748
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
H+R + ++L ++++ S + SK++QQ G LGLQL +G+F + +
Sbjct: 749 HVRENS--------RENSLLRMVEANSKGSFSKMMQQGGCLGLQLR-QGEF----VYHRV 795
Query: 658 ASHFER-IYPMDLNYPTA-----KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
S F R + Y T+ GL++ F GLDP E HS+S+R+ S + +
Sbjct: 796 KSLFPRAVENESRGYLTSSELWKSMGLVESSFLDGLDPREFFIHSLSSRKGNDGSQQRCA 855
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAAT 771
+ F+ LM+ ++D+ + YD T+R+ I QF Y A GEPVG+LA T
Sbjct: 856 ---SFFRFLMSYMKDIRVEYDNTIRSTHGGHIFQFSYGATAE-------PGEPVGLLAGT 905
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
A+ P Y V+ SSP ++ + ++ IL SF + IDR V L L ++
Sbjct: 906 AVIEPVYDQVMSSSPQASTMLKTLQNILFSN-SFKD--IDRCVTLKLQKLPVQPEWI--- 959
Query: 832 AAYMVKNQLKRVSLKDAAVEFLIEY 856
A V++ LK V++ A + IEY
Sbjct: 960 -ALQVQDFLKPVTIGMLASKIWIEY 983
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGT----SEPGK 67
G ++ + F T +EI AS+ + A L N GLP C SCG +
Sbjct: 20 GTLIALDFRPLTSEEIIRASVYEVKTVRA--LQNNRFGLPNLSDCCTSCGAKRTDASNSA 77
Query: 68 CEGHFGYIELPIPIYHPSHISEL-----KLTMYAFQLQIKNDGVAQRLLSSCCEV 117
C GH G+IELP+ +YH IS L ++ ++ + + K R LSS +V
Sbjct: 78 CPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSSLEQV 132
>gi|357516875|ref|XP_003628726.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522748|gb|AET03202.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 606
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/258 (57%), Positives = 177/258 (68%), Gaps = 31/258 (12%)
Query: 236 PNSTTKAWL-EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
PN +L EKMRTLFIRKGSGFSSR+VITGD YK++NE+G+P E+AQRITFEERV++
Sbjct: 35 PNPNLFTFLSEKMRTLFIRKGSGFSSRTVITGDGYKKINEVGIPLEVAQRITFEERVSIL 94
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDG---DTVFINRP 351
NI+YLQ+LVD LCLTY +G S+YSLREGSKGHT+L+PGQ+VH + G + P
Sbjct: 95 NIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHGGLWTGILFSSTDCQLP 154
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
+T L +S+ VKINPLICGPL ADFDGDC+HLFYPQSLAAKAEVLELFSV
Sbjct: 155 TSTPCKRLWYISMTTR----VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 210
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCS 471
EKQLLSS++ LD+A Q+AMF PLP PAL KA
Sbjct: 211 EKQLLSSYS----------------------VLDRAAANQMAMFLSLPLPMPALLKASTG 248
Query: 472 -ARWTALQILQSVLPPGF 488
+ WT++QILQ LP F
Sbjct: 249 DSYWTSIQILQCALPFSF 266
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN--STTKAWLEKMRTLFIRKGSGF 258
VE+NDLQ V QYL++RG +KS+RD++ +G ++D N S+T AWLEKMRTLFIRKGSGF
Sbjct: 331 VEANDLQSVVDQYLQIRGISKSARDIETHYGFNKDLNDDSSTNAWLEKMRTLFIRKGSGF 390
Query: 259 SSRSVITGDAYKRVN 273
SSR+VITGD YK++
Sbjct: 391 SSRNVITGDGYKKIG 405
>gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 264/985 (26%), Positives = 443/985 (44%), Gaps = 157/985 (15%)
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
ST ++ ++ + + K S + RS++ GD +NEIG+P +A + E+V+ +N
Sbjct: 290 STDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFE 349
Query: 298 YLQ-----ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 352
+ L+ ++ L +G+ + +R+ ++ L G + +R + DGD V +NRPP
Sbjct: 350 TINLKCNLHLLTKEVLLVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVNRPP 404
Query: 353 TTHKHSLQALSV-YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
+ H+HSL ALS + V INPL C P DFDGDC+H + PQ L ++ E+ EL S+
Sbjct: 405 SVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSL 464
Query: 412 EKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFA----LSPLPRPALS 466
QLL+ +G + L D+L + ++ FL+KA QQL M + L+P+P S
Sbjct: 465 SGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKS 524
Query: 467 KARCSARWTALQILQSVLPPGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
WT Q+ +LP G + D+ L IK SEVL + + + + + +F
Sbjct: 525 TNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFK 584
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL-------------SKAALWNIQKE 572
E G + LEF S Q +L E L G SVSL D L AL ++
Sbjct: 585 EYGCK-ALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEA 643
Query: 573 IQ---------ALYSLLYH-----RMSTQNELVDLQIENHIRHVKM------------LV 606
Q ++ +L Y+ R +T + Q+ I M +V
Sbjct: 644 FQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMTSFKSVFNDLLKMV 703
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFYSKTLVEDIASHFERIY 665
+++ K +++ +I+S S +V K VQQ +GLQL + + F + + ++ + +
Sbjct: 704 QQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSL 763
Query: 666 PMDLNYPTAK-------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
++ T++ Y +I+ F GL+P E + H+IS R S PGTL +
Sbjct: 764 NCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 821
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY--AVNARKSHSLFPAGEPV---GVLAATAM 773
LM LRD + YDGTVR+ I++F Y A H L GEPV G AA ++
Sbjct: 822 KLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDL--EGEPVAPVGSWAACSI 879
Query: 774 SNPAYKAV------LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKY 827
S AY A+ L+ SP N ++E+L C N+ +D +L+L+ +Y
Sbjct: 880 SEAAYGALDHPVNSLEDSPLMN-----LQEVLKCHKGTNS--LDHTGLLFLSKHLRKYRY 932
Query: 828 CQERAAYMVKNQLKRV-----------SLKDAAVEFLI-----EYKK---------PEI- 861
E A+ VK+ L+RV +K +EF++ +Y P +
Sbjct: 933 GFEYASLEVKDHLERVDFSDMVDTETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVS 992
Query: 862 ISDDEGLVGH-------------IHLNKILLEDLRISMHDILPKCQETL-KSFCKKKKMK 907
IS+ + VG+ + + + L + ++P TL K F + K +K
Sbjct: 993 ISNSKCSVGNECVKNQTCCVSMVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVK 1052
Query: 908 KVVQFFKNTSLSI--SECC-------SFQQSCADKRSNMPCLMFV--LRGASDSYLDKLS 956
Q L + SE C + Q +C +P + + R + D
Sbjct: 1053 VQCQEDNELVLKVGMSEHCKSGKFWATLQNAC------IPIMELIDWERSRPERVYDNFC 1106
Query: 957 GVLANMIYPVLLETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNS 1016
+ + +E+ L ++ + + + ++HL+++A+ ++ +G G +S
Sbjct: 1107 SYGIDSAWKFFVES-----------LRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSS 1155
Query: 1017 GGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSR 1076
G K L++ PF+EA P F AA++ DNLS + A +WGK G+
Sbjct: 1156 QGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGP 1215
Query: 1077 FDLLWQTENEEFNQDDGVDVYDFLH 1101
F +L+ ++ E Q++ +YDFLH
Sbjct: 1216 FKILYSGKSHETKQNE--HIYDFLH 1238
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 255/965 (26%), Positives = 413/965 (42%), Gaps = 154/965 (15%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
++ I+F L T ++ +S +I + N LGLP +C +CG+ C+GH
Sbjct: 13 AELNAIKFSLMTSSDM--EKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGH 70
Query: 72 FGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRLLSSCCEVKEML 121
FG I+L +++ I E+ LT+ K DG + C K+
Sbjct: 71 FGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQGTCKYCS-KDGS 129
Query: 122 KRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS--------- 172
K P K L + V + +++ GV+ S + +
Sbjct: 130 KLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNKAPHETLPQDF 189
Query: 173 ------------IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA 220
+ KK+L ++ + P +Q +L L V T
Sbjct: 190 WDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQVTRRRELLFL--SCLPV--TP 245
Query: 221 KSSRDVDARFGVSQDP----NSTTKAWLEKMRTLFIRKGSGFSSRSVIT----------- 265
R + +G S P + TKA+ ++M L+ +K SS S T
Sbjct: 246 NCHRVAEMPYGHSDGPRLAFDDRTKAY-KRMVDLYSKKSDDESSASTDTYGIKWLKDIIL 304
Query: 266 ----GDAYKRV---------NEIGVPFEIAQRITFEERVNVHNINYLQ-----ELVDNKL 307
+A++ + NEIG+P +A + E+V+ +N + L+ ++
Sbjct: 305 SKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEV 364
Query: 308 CLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV-YV 366
L +G+ + +R+ ++ L G + +R + DGD V +NRPP+ H+HSL ALS +
Sbjct: 365 LLVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLL 419
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
V INPL C P DFDGDC+H + PQ L ++ E+ EL S+ QLL+ +G +
Sbjct: 420 STQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSLVS 479
Query: 427 LATDALLSL-KVMFKKYFLDKAFTQQLAMF----ALSPLPRPALSKARCSARWTALQILQ 481
L D+L + ++ FL+KA QQL M +L+P+P S WT Q+
Sbjct: 480 LTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFG 539
Query: 482 SVLPPGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
+LP G + D+ L IK SEVL + + + + + +F E G + LEF S Q
Sbjct: 540 MLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYGC-KALEFLSSTQ 598
Query: 541 PLLMENLFADGFSVSLEDFSL-------------SKAALWNIQKEIQ---------ALYS 578
+L E L G SVSL D L AL ++ Q ++ +
Sbjct: 599 DVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPN 658
Query: 579 LLYH-----RMSTQNELVDLQIENHIRHVKM------------LVAKFILKSSTLGYLID 621
L Y+ R +T + Q+ I M +V +++ K +++ +I+
Sbjct: 659 LKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMIN 718
Query: 622 SKSDSAVSKVVQQAGFLGLQL-SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK----- 675
S S +V K VQQ +GLQL + + F + + ++ + + ++ T++
Sbjct: 719 SGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQ 778
Query: 676 --YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 733
Y +I+ F GL+P E + H+IS R S PGTL + LM LRD + YDG
Sbjct: 779 DMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTRKLMYHLRDTYVAYDG 836
Query: 734 TVRNVCSNSIIQFDY--AVNARKSHSLFPAGE---PVGVLAATAMSNPAYKAV------L 782
TVR+ I++F Y A H L GE PVG AA ++S AY A+ L
Sbjct: 837 TVRSSYGQQIVRFSYDTADGMYSDHDL--EGEPVAPVGSWAACSISEAAYGALDHPVNSL 894
Query: 783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
+ SP N ++E+L C N+ +D +L+L+ +Y E A+ VK+ L+R
Sbjct: 895 EDSPLMN-----LQEVLKCHKGTNS--LDHTGLLFLSKHLRKYRYGFEYASLEVKDHLER 947
Query: 843 VSLKD 847
V D
Sbjct: 948 VDFSD 952
>gi|224072883|ref|XP_002303926.1| predicted protein [Populus trichocarpa]
gi|222841358|gb|EEE78905.1| predicted protein [Populus trichocarpa]
Length = 1020
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/264 (56%), Positives = 174/264 (65%), Gaps = 22/264 (8%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SVTMVAKGVLKEHLILL NSMTCAG L+GF +GGYK LSRSL++QVPFTEATLF
Sbjct: 234 QRLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFT 293
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKAAEK HTD+LSS+VA+C+WGKHV VGTGS FD+LW T+ N + +DVY F
Sbjct: 294 PRKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSF 353
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDG--LEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLEN 1157
L+MVRS+ G EE T CLG EVD LEDE DW+LSPEHN SDKP FED E Q +L N
Sbjct: 354 LNMVRSTAGGEESVTACLGAEVDDLMLEDE-DWNLSPEHNSSSDKPTFEDSAEFQDFLGN 412
Query: 1158 KQENANWD--SEADCRKSSEDKWE---KLGTSLEKP--------------SSGWRTEGAW 1198
+ +NW+ S R S W+ G EKP SSGW T A
Sbjct: 413 QPAESNWEKISSLKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAAR 472
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTE 1222
++ E + S SGW T+
Sbjct: 473 TTNNSWNSENNVAQSNSFSGWATK 496
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 78/115 (67%), Gaps = 7/115 (6%)
Query: 859 PEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSL 918
PE D GLVGH+HL+K L+DL I+ IL KCQET+ +F KK KKV FK T L
Sbjct: 7 PESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKCQETVNTFRKK---KKVGNLFKKTIL 63
Query: 919 SISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK 973
+SE CSFQQ C D+ PCLMF +GA D +L++ S +LA+MI PVLLETIIK
Sbjct: 64 LVSESCSFQQ-CIDE---SPCLMFFWQGADDVHLERTSNILADMICPVLLETIIK 114
>gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a
gi|8493592|gb|AAF75815.1|AC011000_18 Contains similarity to DNA-directed RNA Polymerase alpha-subunit from
Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA largest subunit, putative; 12353-6556 [Arabidopsis
thaliana]
gi|59939208|gb|AAX12372.1| DNA-directed RNA polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|332195921|gb|AEE34042.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 284/1126 (25%), Positives = 473/1126 (42%), Gaps = 211/1126 (18%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
G + I F ++ + S+ + + +Q+ + LGLP C +CG+ + CEGH
Sbjct: 13 GTLTSIGFSISNNNDRDKMSVLE--VEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGH 70
Query: 72 FGYIELPIPIYHPSHISELKLTMYAF----------QLQIKND----------GVAQRLL 111
FG I I +P + E+ + Q QI D L+
Sbjct: 71 FGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITEDQPERCRYCTLNTGYPLM 130
Query: 112 SSCCEVKEMLKR------IPEETRKKLAGKG----------YFPQDGYI----------- 144
KE+ +R + EE+ KL +G + PQD I
Sbjct: 131 KFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWSFLPQDSNIDESCLKPTRRI 190
Query: 145 -----------------------------LEYLPVPPNCLSVPDISDGV--STMSSDLSI 173
L PV PN V +I + + D
Sbjct: 191 ITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEIVHQFNGARLIFDERT 250
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRG-TAKSSRDVDARFGV 232
+ KK++ FE +E + + QY + T SS+D +
Sbjct: 251 RIYKKLV--------------GFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY-- 294
Query: 233 SQDPNSTTK-AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
Q + T K L M+ + + K S + R+V+ GD ++NEIG+P IA+R+ E +
Sbjct: 295 -QKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHL 353
Query: 292 NVHN-----INYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF----LRPGQVVHRRIMD 342
N N +++ L+DNK +R G + L+ G + R +MD
Sbjct: 354 NQCNKERLVTSFVPTLLDNK----------EMHVRRGDRLVAIQVNDLQTGDKIFRSLMD 403
Query: 343 GDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
GDTV +NRPP+ H+HSL A++V + V +NP+ C P DFDGDC+H + PQS+ A
Sbjct: 404 GDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQA 463
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMFALSP 459
K E+ EL +++KQL++ NG L L D+L + L + K +L++A QQL M+
Sbjct: 464 KVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQ 523
Query: 460 LPRPALSKARCSA---RWTALQILQSVLPPGFDSCG--DRYLIKKSEVLK----GDFDRD 510
LP PA+ KA S+ +WT +Q+ + PPGFD + ++ E+L + RD
Sbjct: 524 LPPPAIIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRD 583
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK--AALWN 568
+ I ++ +KG +VL+ S Q +L + L G SVSL D LS + N
Sbjct: 584 GEGNFIERLLK---HDKG--KVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKN 638
Query: 569 IQKEIQA-------------------------------------LYSLLYHRM--STQNE 589
+ +EI L Y R +T +E
Sbjct: 639 LTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSE 698
Query: 590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
L ++ R V+ L ++ +S++ + + S + K+VQ + +GLQ S +
Sbjct: 699 LAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSF 758
Query: 650 SKTLVEDIASHFERIYPM--------DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
A+ + P+ YG+I+ F GL+P E HS+++R+
Sbjct: 759 GFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRD 818
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA 761
+ L PGTL + LM +RD+ YDGTVRN N ++QF Y +
Sbjct: 819 SSFSGNADL--PGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPVEDI---T 873
Query: 762 GEPVGVLAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVI 815
GE +G L+A A+S AY A +L++SP N +K +L C ++ +
Sbjct: 874 GEALGSLSACALSEAAYSALDQPISLLETSPLLN-----LKNVLEC--GSKKGQREQTMS 926
Query: 816 LYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD-AAVEFLIEYKKPEIISDDEGLVGHIHL 874
LYL++ +K+ E + +KN L+++S + + +I V H H+
Sbjct: 927 LYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHI 986
Query: 875 NKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKR 934
++ +L+ ++S ++ E KS ++ K+ V +NT + C S Q+ D
Sbjct: 987 SEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNT----NHCSSDDQAMKDDN 1042
Query: 935 SNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKENWWVRQ 980
C+ + AS + +L + +I P LL++ +K + +++
Sbjct: 1043 V---CITVTVVEASKHSVLELDAIRLVLI-PFLLDSPVKGDQGIKK 1084
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
L ++V+ K +L+EHL+L+A+S++ G+ V N+ G+ + + PFT+A P
Sbjct: 1167 LESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPS 1226
Query: 1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
+CF KAA++ D+L + A +WGK GTG +F+++ + F VDVYD L
Sbjct: 1227 QCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTP--VDVYDLLS 1284
Query: 1102 MVRS 1105
++
Sbjct: 1285 STKT 1288
>gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 310/1247 (24%), Positives = 522/1247 (41%), Gaps = 225/1247 (18%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
E + ++F L T ++ +S SI + N LGLP +C +CG+ C+G
Sbjct: 38 EADLKAVKFSLMTSSDM--EKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDG 95
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
HFG I+L +++P I E+ +Q+ N ++ C +K+ +
Sbjct: 96 HFGVIKLAATVHNPCFIEEV--------VQLLN-----QICPGCLTLKQNGDTKKTDGTT 142
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVE--IIRS 188
Y +DG L Y V L+ P ++ S + + S+ ++ +V + +
Sbjct: 143 IQTTCKYCSKDGAKL-YPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHN 201
Query: 189 SRSGTPNF------------ESQEVESNDLQLAVGQYLEVRGTAKS-----SRDVDARFG 231
S++ P+ ++Q +SN + + Y +V K+ + +R
Sbjct: 202 SKNKAPHETLPQDFWDFVPDDNQPPQSNVAKKILSPY-QVFHMLKNLDPELINQLYSRKS 260
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+DP S + ++ + + K S + RS++ GD +NEIG+P ++A + E+V
Sbjct: 261 DGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQV 320
Query: 292 NVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTV 346
+ +N + L+ ++ L +G + +R+ +K L G + +R + DGD V
Sbjct: 321 SFYNFETINLKCNLHLLTKEVLLVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLV 375
Query: 347 FINRPPTTHKHSLQALSV-YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
+NRPP+ H+HSL ALS + V INPL C P DFDGDC+H + PQ+L ++ E+
Sbjct: 376 LVNRPPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVEL 435
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF--ALSPLPR 462
L S+ Q+L++ +G + L D+L + ++ FL KA QQL + ++SP P
Sbjct: 436 DGLVSLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPE 495
Query: 463 PALSKARC--SARWTALQILQSVLPPGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEI 519
P++ K+ + WT Q+ +LP G + D+ L IK SEVL + + + +
Sbjct: 496 PSVVKSANFQGSLWTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSV 555
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL-----SKAAL-------W 567
+ +F E G + LEF S Q +L E L G SVSL D L S+ L
Sbjct: 556 FSVMFKEYG-SKALEFLSSTQDVLCEFLTMKGLSVSLSDLYLFSDHYSRKKLSEEIHLAL 614
Query: 568 NIQKEIQALYSLLYHRMSTQN----ELVDLQIENHIRHVKMLVAKFILKSSTLGY----- 618
+ +E + +L + +S N + D +H + V+ I+KSS G+
Sbjct: 615 DEAEEAFQIKQILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFN 674
Query: 619 ------------------LIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFYSKTLVEDIAS 659
+I+S S +V K VQQ +GLQL + F + + ++
Sbjct: 675 DLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSW 734
Query: 660 HFERIYPMDLNYPTAK-------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ ++ ++ T++ Y +I+ F GL+P E + H+IS R S
Sbjct: 735 NRQKSLNCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADV 792
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY--AVNARKSHSL-FPAGEPVGVLA 769
PGTL + LM LRD + YDGTVR+ I+QF Y A H L G PVG A
Sbjct: 793 PGTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWA 852
Query: 770 ATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGC 823
A ++S AY A+ L+ SP N ++E+L C + +L+L+
Sbjct: 853 ACSISEAAYGALDHPVNALEDSPLMN-----LQEVLKCHKGTKSAV--HTGLLFLSKYLK 905
Query: 824 GRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLR 883
+Y E A+ VK+ L+ V D ++ K+ + ++ +L
Sbjct: 906 KYRYGFEYASLEVKDHLELVDFSDLVDTETMKIKRLRL--------------GFIVRELI 951
Query: 884 ISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFV 943
+ + K T+ S C +S S+ CS C RS ++
Sbjct: 952 DQYNALRKKLNNTIPSVC----------------ISYSK-CSVGNECVKNRSCCITMVAQ 994
Query: 944 LRGASDSYLDKLSGVLANMIYPVLLETIIK---ENWWVRQRLSASVTMVAKGVLKEH--- 997
+ S S LD ++ + P +L T++K E V+ +V K + EH
Sbjct: 995 VESNSTSQLD----IIKERVIPSILATLLKGFLEFENVKVECQQDSELVVKVGMSEHCKT 1050
Query: 998 ----------------LI------------------------LLANSMTCAGDLVGFN-- 1015
LI S+ D +G N
Sbjct: 1051 GKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNVH 1110
Query: 1016 -------------SGGYKAL-SRSLNVQVPFTEATLFMPRKCFEK-------AAEKRHTD 1054
SG + L S+ L Q + + CF + AA++ D
Sbjct: 1111 RQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVD 1170
Query: 1055 NLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
NLS + A +WGK GT F +L+ ++++ Q+ ++YDFLH
Sbjct: 1171 NLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTKQNK--NIYDFLH 1215
>gi|222629403|gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 310/1251 (24%), Positives = 521/1251 (41%), Gaps = 203/1251 (16%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSE------- 64
++ I+F L T ++ +S +I + N LGLP +C +CG+
Sbjct: 34 AELNAIKFSLMTSSDM--EKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGK 91
Query: 65 ---PGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRLL 111
GK GHFG I+L +++ I E+ LT+ K DG +
Sbjct: 92 KKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQGT 151
Query: 112 SSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
C K+ K P K L + V + +++ GV+ S +
Sbjct: 152 CKYCS-KDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNK 210
Query: 172 S---------------------IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAV 210
+ + KK+L ++ + P +Q+ + + V
Sbjct: 211 APHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQDDRTKAYKRMV 270
Query: 211 GQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
Y S+ D S D T WL + + + K S + RS++ GD
Sbjct: 271 DLY---------SKKSDDESSASTDTYGT--KWL---KDIILSKRSDNAFRSIMVGDPKI 316
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSK 325
+NEIG+P +A + E+V+ +N + L+ ++ L +G+ + +R+ ++
Sbjct: 317 NLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIF-VRKANQ 375
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV-YVHDDHTVKINPLICGPLSA 384
L G + +R + DGD V +NRPP+ H+HSL ALS + V INPL C P
Sbjct: 376 ----LEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKG 431
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYF 443
DFDGDC+H + PQ L ++ E+ EL + QLL+ +G + L D+L + ++ F
Sbjct: 432 DFDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVF 491
Query: 444 LDKAFTQQLAMF----ALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYL-IK 498
L+KA QQL M +L+P+P S WT Q+ +LP G + D+ L IK
Sbjct: 492 LEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIK 551
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
SEVL + + + + + +F E G + LEF S Q +L E L G SVSL D
Sbjct: 552 DSEVLTCSSGSFWLQNNTSSLFSVMFKEYGC-KALEFLSSTQDVLCEFLTMWGLSVSLSD 610
Query: 559 FSL-------------SKAALWNIQKEIQ---------ALYSLLYH-----RMSTQNELV 591
L AL ++ Q ++ +L Y+ R +T +
Sbjct: 611 LYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSG 670
Query: 592 DLQIENHIRHVKM------------LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
Q+ I M +V +++ K +++ +I+S S +V K VQQ +G
Sbjct: 671 FTQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVG 730
Query: 640 LQL-SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK-------YGLIKGCFFHGLDPYE 691
LQL + + F + + ++ + + ++ T++ Y +++ F GL+P E
Sbjct: 731 LQLPASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLE 790
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY--A 749
+ H+IS R S PGTL + LM LRD + YDGTVR+ I++F Y A
Sbjct: 791 CLLHAISGRANFF--SENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTA 848
Query: 750 VNARKSHSL-FPAGEPVGVLAATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCR 802
H L G PVG AA ++S AY A+ L+ SP N ++E+L C
Sbjct: 849 DGMYSDHDLEGEPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMN-----LQEVLKCH 903
Query: 803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEI- 861
N+ +D +L+L+ +Y E A+ VK+ L+RV D +I Y ++
Sbjct: 904 KGTNS--LDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQ 961
Query: 862 ISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSIS 921
+ + H HLN+ ++ R+ + I+ + + + +K++ + S+SIS
Sbjct: 962 KTKGNPWITHFHLNQETMKIKRLGLEFIVREIIDQYNTL--RKQLNNAI-----PSVSIS 1014
Query: 922 ECCSFQQSCADKRS--------------NMPCLMFVLRGASDSYLDKLSGVLANMIYPVL 967
+ +K N C + ++ + + +L V+ + P +
Sbjct: 1015 NSETLHLKMENKSGKLGKNLGTGNECVKNQTCCVTMVVQVEINSMSQLD-VIKERVIPSI 1073
Query: 968 LETIIK---ENWWVRQRLSASVTMVAKGVLKEHL------ILLANSMTCAGDLV------ 1012
L T++K E V+ + +V K + EH L N+ +L+
Sbjct: 1074 LATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSR 1133
Query: 1013 ------GFNSGGY---------------KALSRSLNVQVPFTEA-TLFMPRKCFEKAAEK 1050
F S G A+ R+++ Q A L P F AA++
Sbjct: 1134 PERVYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSRPAHSFINAAKR 1193
Query: 1051 RHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
DNLS + A +WGK G+ F +L+ ++ E Q++ +YDFLH
Sbjct: 1194 DSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNE--HIYDFLH 1242
>gi|218195401|gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 308/1249 (24%), Positives = 522/1249 (41%), Gaps = 199/1249 (15%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSE------- 64
++ I+F L T ++ +S +I + N LGLP +C +CG+
Sbjct: 13 AELNAIKFSLMTSSDM--EKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGK 70
Query: 65 ---PGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRLL 111
GK GHFG I+L +++ I E+ LT+ K DG +
Sbjct: 71 KKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQGT 130
Query: 112 SSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
C K+ K P K L + V + +++ GV+ S +
Sbjct: 131 CKYCS-KDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNK 189
Query: 172 S---------------------IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAV 210
+ + KK+L ++ + P +Q+ + + V
Sbjct: 190 APHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQDDRTKAYKRMV 249
Query: 211 GQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
Y +K S D + ST ++ ++ + + K S + RS++ GD
Sbjct: 250 DLY------SKKSDD--------ESSASTDTYGIKWLKDIILSKRSDNAFRSIMVGDPKI 295
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSK 325
+NEIG+P +A + E+V+ +N + L+ ++ L +G+ + +R+ ++
Sbjct: 296 NLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIF-VRKANQ 354
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV-YVHDDHTVKINPLICGPLSA 384
L G + +R + DGD V +NRPP+ H+HSL ALS + V INPL C P
Sbjct: 355 ----LEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKG 410
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYF 443
DFDGDC+H + PQ L ++ E+ EL S+ QLL+ +G + L D+L + ++ F
Sbjct: 411 DFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVF 470
Query: 444 LDKAFTQQLAMF----ALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYL-IK 498
L+KA QQL M +L+P+P S WT Q+ +LP G + D+ L IK
Sbjct: 471 LEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIK 530
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
SEVL + + + + + +F E G + LEF S Q +L E L G SVSL D
Sbjct: 531 DSEVLTCSSGSFWLQNNTSSLFSVMFKEYGC-KALEFLSSTQDVLCEFLTMWGLSVSLSD 589
Query: 559 FSL-------------SKAALWNIQKEIQ---------ALYSLLYH-----RMSTQNELV 591
L AL ++ Q ++ +L Y+ R +T +
Sbjct: 590 LYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSG 649
Query: 592 DLQIENHIRHVKM------------LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
Q+ I M +V +++ K +++ +I+S S +V K VQQ +G
Sbjct: 650 FTQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVG 709
Query: 640 LQL-SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK-------YGLIKGCFFHGLDPYE 691
LQL + + F + + ++ + + ++ T++ Y +I+ F GL+P E
Sbjct: 710 LQLPASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLE 769
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY--A 749
+ H+IS R S PGTL + LM LRD + YDGTVR+ I++F Y A
Sbjct: 770 CLLHAISGRANFF--SENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTA 827
Query: 750 VNARKSHSL-FPAGEPVGVLAATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCR 802
H L G PVG AA ++S AY A+ L+ SP N ++E+L C
Sbjct: 828 DGMYSDHDLEGEPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMN-----LQEVLKCH 882
Query: 803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEI- 861
N+ +D +L+L+ +Y E A+ VK+ L+RV D +I Y ++
Sbjct: 883 KGTNS--LDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQ 940
Query: 862 ISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQF--------- 912
+ + H HL++ ++ R+ + I+ + + + +K++ +
Sbjct: 941 KTKGNPWITHFHLSQETMKIKRLGLEFIVREIIDQYNTL--RKQLNNAIPSVSISNSETL 998
Query: 913 ---FKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLE 969
+N S + + C ++ ++ + S S LD V+ + P +L
Sbjct: 999 HLKMENKSGKLGKNLGTGNECVKNQTCCVSMVVQVEINSMSQLD----VIKERVIPSILA 1054
Query: 970 TIIK---ENWWVRQRLSASVTMVAKGVLKEHL------ILLANSMTCAGDLV-------- 1012
T++K E V+ + +V K + EH L N+ +L+
Sbjct: 1055 TLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPE 1114
Query: 1013 ----GFNSGGY---------------KALSRSLNVQVPFTEA-TLFMPRKCFEKAAEKRH 1052
F S G A+ R+++ Q A L P F AA++
Sbjct: 1115 RVYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSRPAHSFINAAKRDS 1174
Query: 1053 TDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
DNLS + A +WGK G+ F +L+ ++ E Q++ +YDFLH
Sbjct: 1175 VDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNE--HIYDFLH 1221
>gi|147816401|emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 255/950 (26%), Positives = 423/950 (44%), Gaps = 182/950 (19%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
G ++GI+F ++T++++ IS I +++ +P LG+P +C +CG + KCEGH
Sbjct: 14 GLLIGIKFDVSTEEDM--EKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGH 71
Query: 72 FGYIELPIPIYHPSHISELKLTMYAFQLQIKN----------DGVAQRLLSSCCE----- 116
FG I+ P I HP ++E+ + K+ D ++RL S C+
Sbjct: 72 FGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAAN 131
Query: 117 -----------------------VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPP- 152
+ EM +++P++ +KK + + P D + +++P P
Sbjct: 132 SNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKK-SFRPVLPLDYW--DFIPKDPQ 188
Query: 153 ---NCLSVPD---ISDG-VSTMSSDLSIAMLKKVLKQVE-IIRSSRSGTPN----FESQE 200
NCL+ P+ +S V + D+ +K+ + +++ + TPN E
Sbjct: 189 QEENCLN-PNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITH 247
Query: 201 VESNDLQLAVGQY-------LEVRGTA-----------KSSRDVDARFGVSQDPNSTTK- 241
SN L Q+ ++ RGTA K+S+ + R S +S +K
Sbjct: 248 ALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKASNLRSEKSTSKDSASKM 307
Query: 242 AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQE 301
+ L+ ++ + + K + S R ++ GD R++EIG+P IA+ + E +N N E
Sbjct: 308 SGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWN----WE 363
Query: 302 LVDNKLCLTYSDGSSSYSLREGS----KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
V N L + +Y R+G+ + + G +++R + DGD V INRPP+ H+H
Sbjct: 364 KVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQH 423
Query: 358 SLQALSVYVHD-DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
S+ ALSV V + V INPL C P DFDGDC+H + PQS+ ++ E+ EL ++ +QL+
Sbjct: 424 SVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLI 483
Query: 417 SSHNG-NLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC--SAR 473
+ +G NL + VM L+ QQL MF L PA+ KA +
Sbjct: 484 NRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQV 543
Query: 474 WTALQILQSVLPPGFD--------SCGDRYLIKKSE--VLKGDFDRDTIPSVINEIVTSI 523
WT Q+ +LPPGF+ D LI S+ D D + S++ +
Sbjct: 544 WTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDC---- 599
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
+G + L+F + Q +L E L G SVSL D LS ++ + LL
Sbjct: 600 ---QG--KALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAE 654
Query: 584 M----------STQNELV------------DLQ-------------------IENHIRHV 602
S+QN L+ D+Q + R +
Sbjct: 655 QTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDI 714
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+ LV ++ K ++L ++ + S + K+VQQ LGLQ S + A+ +
Sbjct: 715 QNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNK 774
Query: 663 RIYPMDLNYPTAK-------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
+ P + T++ Y +++ F GL+P E HS+++R+ + L PGT
Sbjct: 775 QKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADL--PGT 832
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA-------------G 762
L + LM +RD+ I YDGTVRN N ++QF Y + H+ P+ G
Sbjct: 833 LTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIE----HTSTPSDGINEDTCAYDMGG 888
Query: 763 EPVGVLAATAMSNPAYKA------VLDSSPSSN--NSWELMKEILLCRVS 804
+PVG ++A A+S AY A +L+ SP N N + +L C+ S
Sbjct: 889 QPVGSISACAISEAAYSALDQPISLLEPSPLLNLKNHLSRLALMLDCKAS 938
>gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
gi|297332282|gb|EFH62700.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 257 bits (657), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 277/1110 (24%), Positives = 473/1110 (42%), Gaps = 178/1110 (16%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
G + I F ++ + T S+ + +Q+ + LGLP C++CG+ + CEGH
Sbjct: 13 GTLTSIGFSISNNTDRDTMSV--IKVEAPNQVTDSRLGLPNPDSICKTCGSKDRKVCEGH 70
Query: 72 FGYIELPIPIYHPSHISELKLTMYAF----------QLQIKND----------GVAQRLL 111
FG I I +P + E+ + Q QI D L+
Sbjct: 71 FGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKKQFQITEDQPERCRYCTSNTGYPLM 130
Query: 112 SSCCEVKEMLKR------IPEETRKKLAGKG----------YFPQDGYILEYLPVPPNCL 155
KE+ +R + EE+ KL +G + PQD I E P +
Sbjct: 131 KFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLALPPDYWSFVPQDSNIDESCLKPTRRI 190
Query: 156 SVPDISDGVSTMSSDLSIAMLKKVLKQVE-IIRSSRSGTPN------------------- 195
V + S + ++KK + + + +S TPN
Sbjct: 191 LT---HAQVYALLSGIDQRLIKKDIPMFDSLALTSFPVTPNGYRVTEIVHQFNGARLVFD 247
Query: 196 -----------FESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
FE +E + + QY + SS D+ + ++ L
Sbjct: 248 ERTRIYRKLVGFEGNTLELSSRVIECMQYSRLFSENVSSSQ-DSANPYQKKSDTPKLCGL 306
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL----- 299
M+ + + K S + R+V+ GD +++EIG+P IA+R+ E +N N L
Sbjct: 307 RFMKDVLLGKRSDHTFRTVVVGDPSLKLHEIGIPERIAKRLQVSEHLNNWNNERLVTFCS 366
Query: 300 QELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
L DNK + G ++R L+ G + R +MDGDTV +NRPP+ H+HSL
Sbjct: 367 PNLFDNKE-VHVRRGDRLVAIRVSD-----LQTGDKIFRNLMDGDTVLMNRPPSIHQHSL 420
Query: 360 QALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
A++V V V +NP+ C P DFDGDC+H + PQS+ AK E+ EL +++KQL++
Sbjct: 421 IAMTVRVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINR 480
Query: 419 HNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSA---R 473
NG L L D+L + L + K +L++A QQL M+ LP PA+ KA S+ +
Sbjct: 481 QNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQ 540
Query: 474 WTALQILQSVLPPGFDSCG--DRYLIKKSEVLK----GDFDRDTIPSVINEIVTSIFFEK 527
WT +Q+ + PPGFD + ++ E+L + RD + I ++ +
Sbjct: 541 WTGMQLFGMLFPPGFDYTYPLNDVVVSNGELLSFSEGSAWLRDGEGNFIQGLI-----KH 595
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK--AALWNIQKEI------------ 573
+VL+ S Q +L + L G SVSL D LS + N+ +EI
Sbjct: 596 DKRKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRKNLTEEISYGLREAEQVCN 655
Query: 574 --------------------------QALYSLLYHRM--STQNELVDLQIENHIRHVKML 605
+ L Y R +T +++ ++ R V+ L
Sbjct: 656 KQQLMVESWRDFLAVNGEDEGEDSVARDLARFCYERQKSATLSKIAVSAFKDAYRDVQAL 715
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
++ +S++ + + S + K+VQ + +GLQ S Y AS +
Sbjct: 716 AYRYGEQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSYGFPRELTCASWNDPNS 775
Query: 666 PM--------DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
P+ YG+I+ F GL+P E HS+++R+ + L PGTL
Sbjct: 776 PLRGAKGEDSTATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLS 833
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPA 777
+ LM +RD+ YDGTVRN N ++QF Y + GE +G L+A A+S A
Sbjct: 834 RRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPVEDI---TGEALGSLSACALSEAA 890
Query: 778 YKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQER 831
Y A +L++SP N +K +L C ++ + LYL++ +K+ E
Sbjct: 891 YSALDQPISLLETSPLLN-----LKNVLEC--GSKKGQREQTMTLYLSETLSKKKHGFEY 943
Query: 832 AAYMVKNQLKRVSLKD-AAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDIL 890
+ +KN L+++S + + +I V H H+++ +L+ ++++ ++
Sbjct: 944 GSLEIKNHLEKLSFSEIVSTSMIIFSPSTNTKVPLSPWVCHFHISEKVLKRKQLNVESVV 1003
Query: 891 PKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDS 950
E KS ++ K+ V ++T + C S ++ D + C+ + AS
Sbjct: 1004 SSLNEQYKSRNRELKLDIVDLDIQST----NHCSSDDKAMKD---DSFCITVTVIEASKH 1056
Query: 951 YLDKLSGVLANMIYPVLLETIIKENWWVRQ 980
+ +L + +I P LL++ +K + +++
Sbjct: 1057 SVLELDAIRLVLI-PFLLDSPVKGSQEIKK 1085
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
L ++V+ K +LKEHL+L+A+S++ G+ V N+ G+ + + PFT+A P
Sbjct: 1168 LESAVSDTGKTILKEHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPS 1227
Query: 1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFL 1100
+CF KAA++ D+L + A +WGK GTG +F+++ + F V+VYD L
Sbjct: 1228 QCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTP--VNVYDLL 1284
>gi|357129748|ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 252 bits (644), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 266/948 (28%), Positives = 427/948 (45%), Gaps = 124/948 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI----SDGV 164
++L S +V +LK++ E K A + ++ L LPV PN V ++ SDG
Sbjct: 203 KILLSPYQVFHILKQVDLELITKFAPR----RELLFLSCLPVTPNRHRVAEMPYRFSDGP 258
Query: 165 STMSSDLSIAMLKKV--LKQVEIIRSSRSGTPNFE---SQEVESNDLQLAVGQYLEVRGT 219
S D + A + V K+++ R P F S V S ++ L + T
Sbjct: 259 SLAYDDRTKAYKRTVDASKKIDDYRQH----PQFSVLASSFVTSRVMECLQSSKLYSKKT 314
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
K S V ++ + TK WL + + K S ++ RS++ GD R++EIG+P
Sbjct: 315 DKESSTDSYGTSVKKNDSYGTK-WL---KDAILSKRSDYAFRSIMVGDPKIRLHEIGIPM 370
Query: 280 EIAQRITFEERVNVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQ 334
++A + E V+++N + L+ +L + +G Y +E L G
Sbjct: 371 DLAD-LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKENQ-----LEIGD 424
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDCIHL 393
+V+R + DGD + +NRPP+ H+HSL ALS + V INPL C PLS DFDGDC+H
Sbjct: 425 IVYRPLQDGDLILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHG 484
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
+ PQS+ ++ E+ EL S+ QLL+ +G + L D+L + ++ L+K QQL
Sbjct: 485 YVPQSIGSRVELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNKTEFQQL 544
Query: 453 AMF--ALSPLPRPALSKA--RCSARWTALQILQSVLPPGFDSCGDRYL-IKKSEVLK--- 504
M +LSP P P++ K+ WT Q+ +LP G + D L IK SEVL
Sbjct: 545 QMLCVSLSPTPVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPKLHIKDSEVLACSG 604
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL--- 561
G F S + S+ F++ E LEF S Q +L E L G SVSL D L
Sbjct: 605 GSFWLQNNTSGL----FSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSD 660
Query: 562 ----------SKAALWNIQKEIQALYSLL----YHRMSTQNELVDLQ--------IENHI 599
AL ++ + LL + ++ DL +++++
Sbjct: 661 HYSRRKFAEEVNLALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNL 720
Query: 600 RHVKMLVAKF--------------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
+K + F K +++ +I++ S ++ K VQQA +GLQL
Sbjct: 721 PIIKSSIMAFKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLP-A 779
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTA---------KYGLIKGCFFHGLDPYEEMTHS 696
GKF + E + + R +D + + +I+ F GL+P E + HS
Sbjct: 780 GKFPFRIPSELTCASWNRHKSLDCDISEGARKRLGGQNSHAVIRNSFIEGLNPLECLLHS 839
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
IS R S PGTL KNLM LRD+ + YDGTVR+ I+QF Y
Sbjct: 840 ISGRANFF--SENADVPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDTAEDIYT 897
Query: 757 SLFPAGE---PVGVLAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNN 807
GE PVG AA ++S AY A V++ SP N ++E+L C+ N+
Sbjct: 898 DCGQEGEFGAPVGSWAACSISEAAYGALDHPVNVIEDSPLMN-----LQEVLKCQKGTNS 952
Query: 808 DPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEI-ISDDE 866
+D +L+L+ +Y E A+ V+N L+ + + +I+Y + +
Sbjct: 953 --LDHFGLLFLSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKGS 1010
Query: 867 GLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISEC-CS 925
+ H H++K +++ R+ + ++ E + K+ ++ V+ + IS+C CS
Sbjct: 1011 PWITHFHISKEMMKRKRLGLRLLVEDLTEHYNA--KRDQLNNVI-----PKVYISKCKCS 1063
Query: 926 FQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK 973
C + ++ C+ V + S+S L PVLL T +K
Sbjct: 1064 DDDDCINNQTC--CITVVAQDESNSTSTSQLDDLKKRAIPVLLATPVK 1109
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 963 IYPVLLETIIKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
+Y + I W + + L + + + + +EHL+++A++++ +G G +S G K
Sbjct: 1167 VYDIFCPCGIDSAWKYFVESLRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQ 1226
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
L+ PF+EA P F KAA++ DNL + A +WGK GT F +++
Sbjct: 1227 QRTQLSTSSPFSEACFSRPADTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMY 1286
Query: 1082 QTENEEFNQDDGVDVYDFLH 1101
+ E Q++ ++Y FLH
Sbjct: 1287 AGKPHEPVQNE--NIYGFLH 1304
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 4 NTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTS 63
N + ++ ++F L + +I T +S +I AS + + LGLP +C +CG+
Sbjct: 9 NNEMDVPMAELKALKFDLLSSADIET--LSSANIIEASDVTSAKLGLPNAAPQCVTCGSQ 66
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISEL 90
C+GH G I+LP +Y P + +L
Sbjct: 67 NVRDCDGHSGVIKLPATVYSPYFLEQL 93
>gi|222642066|gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 251/924 (27%), Positives = 419/924 (45%), Gaps = 119/924 (12%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
E + ++F L T ++ +S SI + N LGLP +C +CG+ C+G
Sbjct: 38 EADLKAVKFSLMTSSDM--EKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDG 95
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
HFG I+L +++P I E+ +Q+ N ++ C +K+ +
Sbjct: 96 HFGVIKLAATVHNPCFIEEV--------VQLLN-----QICPGCLTLKQNGDTKKTDGTT 142
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVE--IIRS 188
Y +DG L Y V L+ P ++ S + + S+ ++ +V + +
Sbjct: 143 IQTTCKYCSKDGAKL-YPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHN 201
Query: 189 SRSGTPNF------------ESQEVESNDLQLAVGQYLEVRGTAKS-----SRDVDARFG 231
S++ P+ ++Q +SN + + Y +V K+ + +R
Sbjct: 202 SKNKAPHETLPQDFWDFVPDDNQPPQSNVAKKILSPY-QVFHMLKNLDPELINQLYSRKS 260
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+DP S + ++ + + K S + RS++ GD +NEIG+P ++A + E+V
Sbjct: 261 DGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQV 320
Query: 292 NVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTV 346
+ +N + L+ ++ L +G + +R+ +K L G + +R + DGD V
Sbjct: 321 SFYNFETINLKCNLHLLTKEVLLVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLV 375
Query: 347 FINRPPTTHKHSLQALSV-YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
+NRPP+ H+HSL ALS + V INPL C P DFDGDC+H + PQ+L ++ E+
Sbjct: 376 LVNRPPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVEL 435
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF--ALSPLPR 462
L S+ Q+L++ +G + L D+L + ++ FL KA QQL + ++SP P
Sbjct: 436 DGLVSLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPE 495
Query: 463 PALSKARC--SARWTALQILQSVLPPGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEI 519
P++ K+ + WT Q+ +LP G + D+ L IK SEVL + + + +
Sbjct: 496 PSVVKSANFQGSLWTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSV 555
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL-----SKAAL-------W 567
+ +F E G + LEF S Q +L E L G SVSL DF L S+ L
Sbjct: 556 FSVMFKEYG-SKALEFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLAL 614
Query: 568 NIQKEIQALYSLLYHRMSTQN----ELVDLQIENHIRHVKMLVAKFILKSSTLGY----- 618
+ +E + +L + +S N + D +H + V+ I+KSS G+
Sbjct: 615 DEAEEAFQIKQILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFN 674
Query: 619 ------------------LIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFYSKTLVEDIAS 659
+I+S S +V K VQQ +GLQL + F + + ++
Sbjct: 675 DLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSW 734
Query: 660 HFERIYPMDLNYPTAK-------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ ++ ++ T++ Y +I+ F GL+P E + H+IS R S
Sbjct: 735 NRQKSLNCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADV 792
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY--AVNARKSHSL-FPAGEPVGVLA 769
PGTL + LM LRD + YDGTVR+ I+QF Y A H L G PVG A
Sbjct: 793 PGTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWA 852
Query: 770 ATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGC 823
A ++S AY A+ L+ SP N ++E+L C + +L+L+
Sbjct: 853 ACSISEAAYGALDHPVNALEDSPLMN-----LQEVLKCHKGTKSAV--HTGLLFLSKYLK 905
Query: 824 GRKYCQERAAYMVKNQLKRVSLKD 847
+Y E A+ VK+ L+RV D
Sbjct: 906 KYRYGFEYASLEVKDHLERVDFSD 929
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 963 IYPVLLETIIKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
+Y + I W + + L ++ + + + ++HL+++A+ ++ +G G +S G K
Sbjct: 1078 VYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQ 1137
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
L++ PF+EA P F AA++ DNLS + A +WGK GT F +L+
Sbjct: 1138 QRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLY 1197
Query: 1082 QTENEEFNQDDGVDVYDFLH 1101
++++ Q+ ++YDFLH
Sbjct: 1198 SGKSQKTKQNK--NIYDFLH 1215
>gi|359474043|ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 269/1030 (26%), Positives = 441/1030 (42%), Gaps = 217/1030 (21%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG- 70
G ++GI+F ++T++++ IS I +++ +P LG+P +C +CG + KCEG
Sbjct: 14 GLLIGIKFDVSTEEDM--EKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGA 71
Query: 71 --------------------------------HFGYIELPIPIYHPSHISELKLTMYAFQ 98
HFG I+ P I HP ++E+ +
Sbjct: 72 VRQVIQKLYLLMISCYLYFLEYAKLXLFIFLGHFGVIKFPFTILHPYFLTEVVQILNKIC 131
Query: 99 LQIKN----------DGVAQRLLSSCCE----------------------------VKEM 120
K+ D ++RL S C+ + EM
Sbjct: 132 PGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEM 191
Query: 121 LKRIPEETRKKLAGKGYFPQDGYILEYLPVPP----NCLSVPD---ISDG-VSTMSSDLS 172
+++P++ +KK + + P D + +++P P NCL+ P+ +S V + D+
Sbjct: 192 NEKLPKKLQKK-SFRPVLPLDYW--DFIPKDPQQEENCLN-PNRRVLSHAQVHYLLKDID 247
Query: 173 IAMLKKVLKQVE-IIRSSRSGTPN----FESQEVESNDLQLAVGQY-------LEVRGTA 220
+K+ + +++ + TPN E SN L Q+ ++ RGTA
Sbjct: 248 PGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTA 307
Query: 221 K--SSRDVDA------RFGVSQDPNSTTK-AWLEKMRTLFIRKGSGFSSRSVITGDAYKR 271
S R +D R S +S +K + L+ ++ + + K + S R ++ GD R
Sbjct: 308 NELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLR 367
Query: 272 VNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS----KGH 327
++EIG+P IA+ + E +N N E V N L + +Y R+G+ +
Sbjct: 368 LSEIGIPCHIAEELLISEHLNSWN----WEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRM 423
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADF 386
+ G +++R + DGD V INRPP+ H+HS+ ALSV V + V INPL C P DF
Sbjct: 424 NDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDF 483
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG-NLNLQLATDALLSLKVMFKKYFLD 445
DGDC+H + PQS+ ++ E+ EL ++ +QL++ +G NL + VM L+
Sbjct: 484 DGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLN 543
Query: 446 KAFTQQLAMFALSPLPRPALSKARC--SARWTALQILQSVLPPGFD--------SCGDRY 495
QQL MF L PA+ KA + WT Q+ +LPPGF+ D
Sbjct: 544 LFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGE 603
Query: 496 LIKKSE--VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
LI S+ D D + S++ + + L+F + Q +L E L G S
Sbjct: 604 LISSSDGSAWLRDIDGNLFSSLVKDC---------QGKALDFLYAAQEVLCEWLSMRGLS 654
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRM----------STQNELV------------ 591
VSL D LS ++ + LL S+QN L+
Sbjct: 655 VSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVP 714
Query: 592 DLQ-------------------IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVV 632
D+Q + R ++ LV ++ K ++L ++ + S + K+V
Sbjct: 715 DVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLV 774
Query: 633 QQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK-------YGLIKGCFFH 685
QQ LGLQ S + A+ ++ P + T++ Y +++ F
Sbjct: 775 QQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLM 834
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL+P E HS+++R+ + L PGTL + LM +RD+ I YDGTVRN N ++Q
Sbjct: 835 GLNPLECFVHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQ 892
Query: 746 FDYAVNARKSHSLFPA-------------GEPVGVLAATAMSNPAYKA------VLDSSP 786
F Y + H+ P+ G+PVG ++A A+S AY A +L+ SP
Sbjct: 893 FSYNI----EHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSP 948
Query: 787 SSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLK 846
N +K +L C DR V L+L+ RK+ E A VKN L+++
Sbjct: 949 LLN-----LKRVLEC--GLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFS 1001
Query: 847 DAAVEFLIEY 856
D +I +
Sbjct: 1002 DIVSTVMIVF 1011
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 963 IYPVLLETIIKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
I+ + + I W + L ++++ + K VL EHL+L+A+ ++ G+ VG N+ G
Sbjct: 1187 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1246
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
++ PF + P CF KA ++ DNL + A +WGK +VG+G FD+L+
Sbjct: 1247 QKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILY 1306
Query: 1082 QTENEEFNQDDGVDVYDFL 1100
+ E + + D+Y L
Sbjct: 1307 SAKGHELARPE--DIYKLL 1323
>gi|224057308|ref|XP_002299207.1| predicted protein [Populus trichocarpa]
gi|222846465|gb|EEE84012.1| predicted protein [Populus trichocarpa]
Length = 779
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 141/179 (78%), Gaps = 3/179 (1%)
Query: 988 MVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKA 1047
MVAKGVLKEHLILL NSMTCAG L+GF +GGYK LSRSL++QVPFTEATLF PRKCFEKA
Sbjct: 1 MVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKA 60
Query: 1048 AEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSST 1107
AEK HTD LSS+VA+CSWGKHV VGTGSRFD+LW T+ N + G+D Y FL+MVRS+
Sbjct: 61 AEKCHTDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGGIDAYSFLNMVRSTA 120
Query: 1108 GIEELDTGCLGEEVDG--LEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANW 1164
G EE T CLG EVD LEDE DW+LSPEH+ SDKP FED E Q +L N+ +NW
Sbjct: 121 GGEESVTACLGAEVDDLILEDE-DWNLSPEHHSSSDKPTFEDSAEFQDFLGNQPAESNW 178
>gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 245/927 (26%), Positives = 421/927 (45%), Gaps = 142/927 (15%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
G ++GI+F ++T++++ IS I +++ +P LG+P +C +CG + KCEGH
Sbjct: 14 GLLIGIKFDVSTEEDM--EKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGH 71
Query: 72 FGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQ-----RLLSSCCE---------- 116
FG I+ P I HP ++E+ + K+ Q RL S C+
Sbjct: 72 FGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRLRSKGCKYCAANSNDWY 131
Query: 117 ------------------VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPP----NC 154
+ EM +++P++ +KK + + P D + +++P P NC
Sbjct: 132 PTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKK-SFRPVLPLDYW--DFIPKDPQQEENC 188
Query: 155 LSVPD---ISDG-VSTMSSDLSIAMLKKVLKQVE-IIRSSRSGTPNFESQEVESNDLQLA 209
L+ P+ +S V + D+ +K+ + +++ + TPN + V L+
Sbjct: 189 LN-PNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPN--NHRVTEITHALS 245
Query: 210 VGQYLEVRGTAKSSRDVDARFGVSQD---PNSTTKAWLEKMRTLFIRKGSGFSSRSVITG 266
GQ L +++ + + G + + +++ + L+ ++ + + K + S R ++ G
Sbjct: 246 NGQTLIFDQHSRAYKKLVDFRGTANELSCHSASKMSGLKWIKEVLLGKRTNHSFRMIVVG 305
Query: 267 DAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS-- 324
D R++EIG+P IA+ + E +N N E V N L + +Y R+G+
Sbjct: 306 DPKLRLSEIGIPCHIAEELLISEHLNSWN----WEKVTNGCNLRLLEKGQTYVRRKGTLA 361
Query: 325 --KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGP 381
+ + G +++R + DGD V INRPP+ H+HS+ ALSV V + V INPL C P
Sbjct: 362 PVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSP 421
Query: 382 LSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG-NLNLQLATDALLSLKVMFK 440
DFDGDC+H + PQS+ ++ E+ EL ++ +QL++ +G NL + VM
Sbjct: 422 FRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMED 481
Query: 441 KYFLDKAFTQQLAMFALSPLPRPALSKAR-CSARWTALQILQSVLPPGFDSCGDRYLIKK 499
L+ QQL MF L PA+ KA +W +++ L L D YL
Sbjct: 482 GVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQWLSMRGLSVSL-------SDIYLSSD 534
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
S K ++I+E+ + E+ F + L D S ++F
Sbjct: 535 SISRK---------NMIDEVFCGLLVA---EQTCHF---------KQLLVD----SSQNF 569
Query: 560 SLSKAALWNIQKEIQALYSLLYHRMST----QNELVDLQIENHIRHVKMLVAKFILKSST 615
L + N + + SL Y R + Q+ + + R ++ LV ++ K ++
Sbjct: 570 -LIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVC--AFKQKFRDIQNLVYQYANKDNS 626
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK 675
L ++ + S + K+VQQ LGLQ S + A+ ++ P + T++
Sbjct: 627 LLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSE 686
Query: 676 -------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
Y +++ F GL+P E HS+++R+ + L PGTL + LM +RD+
Sbjct: 687 YAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLY 744
Query: 729 ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA-------------GEPVGVLAATAMSN 775
I YDGTVRN N ++QF Y + H+ P+ G+PVG ++A A+S
Sbjct: 745 IAYDGTVRNAYGNQLVQFSYNI----EHTSTPSDGINEDTCAYDMGGQPVGSISACAISE 800
Query: 776 PAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQ 829
AY A +L+ SP N +K +L C DR V L+L+ RK+
Sbjct: 801 AAYSALDQPISLLEPSPLLN-----LKRVLEC--GLRKSTADRTVSLFLSKKLEKRKHGF 853
Query: 830 ERAAYMVKNQLKRVSLKDAAVEFLIEY 856
E A VKN L+++ D +I +
Sbjct: 854 EYGALEVKNHLEKLLFSDIVSTVMIVF 880
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 963 IYPVLLETIIKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
I+ + + I W + L ++++ + K VL EHL+L+A+ ++ G+ VG N+ G
Sbjct: 1045 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1104
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
++ PF + P CF KA ++ DNL + A +WGK +VG+G FD+L+
Sbjct: 1105 QKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILY 1164
Query: 1082 QTENEEFNQDDGVDVYDFL 1100
+ E + + D+Y L
Sbjct: 1165 SAKGHELARPE--DIYKLL 1181
>gi|68300839|gb|AAY89358.1| RNA polymerase IV largest subunit [Sphagnum sp. JL-2005]
Length = 969
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 200/677 (29%), Positives = 310/677 (45%), Gaps = 99/677 (14%)
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF- 439
P +ADFDGD H+F PQS+ A E+ EL +V++Q++ S G L L D LL+ +M
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELMTVQQQIICSQGGLPLLGLTQDTLLAAHLMTC 60
Query: 440 KKYFLDKAFTQQLAMFALSPL-PRPALSKA-RCSARWTALQILQSVLPPG--FDSCGDRY 495
+K FLDK QL M++ + + P A+ K+ + WT Q+ LP G F +
Sbjct: 61 QKVFLDKVSMDQLQMWSSAAVVPEAAILKSPKGGPLWTGEQLYSLTLPAGVDFHTLDGEV 120
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI+ E+LK F + N ++ +I + GPE V+E+ +S + LL L ++GFS
Sbjct: 121 LIRNGEILKTGFSSKWLQKGRNSLIDAICDQSGPEAVVEYLNSAKGLLHAWLDSNGFSTG 180
Query: 556 LEDFSLSKAA--------------LWNIQKEIQALYSLLYHRMSTQNELVDLQIENHI-- 599
L DF ++ A L +++ + + + VDL+++
Sbjct: 181 LTDFLVTSNAKERRSMLQRVSVDCLQRAKEQSINTLQICDAKFQLSHLSVDLEVDGAFDR 240
Query: 600 ---------RHVKML----VAKFILKSSTLGYLIDSKSDS---------------AVSKV 631
V+ML + F + +G ++ S S ++SK+
Sbjct: 241 LEVNPASLSNKVQMLESIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGSTKASMSKL 300
Query: 632 VQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
+ Q +GLQL + V + ++ E L +GL++ GL ++
Sbjct: 301 LDQIACMGLQLYKGEHMLPFSHVLNNSAPLES----QLQEWWEDHGLVQNSLVDGLTAFQ 356
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVN 751
H I+ R I+R + +PGTLFK LM LRD+ + YDGTVR+ C ++QF Y
Sbjct: 357 LFNHVIANRTSILRKHVEVVQPGTLFKVLMLFLRDLHVGYDGTVRSQCGQKVVQFCYG-G 415
Query: 752 ARKSHSL-------------FPAGEPVGVLAATAMSNPAYKAVLDSSPSSN---NSWELM 795
AR H + AGEPVGVLAATA+S PAY+++LD+ S EL+
Sbjct: 416 ARARHRRSRKEDPDLRWKVSYLAGEPVGVLAATALSQPAYESMLDAPHHSGWKIRPLELV 475
Query: 796 KEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIE 855
+E L R + +DRR IL L C C + C ER V+NQL+R+ LK A +IE
Sbjct: 476 QETLYPREKGDPKAVDRRAILRLTHCDCSKSSCLERRVLRVQNQLRRIILKTLAQTSIIE 535
Query: 856 Y------KKPEI----ISDDEGLVGHIHLNKILLEDLRISMHDILPKCQE---TLKSFCK 902
Y +K + + +GHIH++K +L+ ++M I+ K Q L+ K
Sbjct: 536 YWDATNERKAGVNGAALRLGSPWLGHIHISKEVLQQHELTMTKIVGKLQRKFSILRPITK 595
Query: 903 KKKMKKVVQFFKNTS---LSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL 959
K + ++ FF ++ +S C F K N + D Y L ++
Sbjct: 596 KNPLGQI--FFCHSEFCDVSRGLCIHFSPKLPKKMQN--------QYDDDEYSHSLLELM 645
Query: 960 ANM---IYPVLLETIIK 973
M I P LLE IK
Sbjct: 646 KKMRDRILPALLECTIK 662
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 72/123 (58%)
Query: 978 VRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1037
V QR++ ++ A +EH+ L+ ++MT +GD GF G++ + +S ++ PFTEA
Sbjct: 757 VVQRVALALEETAPHTYREHIKLIGDTMTYSGDANGFTFSGFRDMIKSAHISAPFTEAAY 816
Query: 1038 FMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVY 1097
P + F AA K D+L SV+ +C WG+ +GTG++ +L WQ +E+ + + D++
Sbjct: 817 QKPIRNFLDAAAKGAMDSLESVMTSCVWGREAPLGTGTKIELRWQPPHEDLQEVEEKDLH 876
Query: 1098 DFL 1100
L
Sbjct: 877 AIL 879
>gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
Length = 1444
Score = 239 bits (609), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 232/848 (27%), Positives = 374/848 (44%), Gaps = 111/848 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGV--ST 166
+++ S +V MLK+ E K+ + ++ L LPV PNC V +I G+
Sbjct: 203 KIILSPYQVFYMLKKSDPELIKQFVSR----RELLFLSCLPVTPNCHRVVEIGYGLPDGR 258
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDV 226
++ D K+++ I R P+F + V KSS+
Sbjct: 259 LTFDDRTKAYKRMVDVSRRIDDYRQ-HPHFSVLASSLVSSR--------VSECLKSSKLY 309
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ ++ WL + + + K S RS++ GD ++ EIG+P +++ +
Sbjct: 310 SKKADGETSTDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLV 366
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP------GQVVHRRI 340
E V+ +N N C + +R K FLR G + +R +
Sbjct: 367 VSEHVSSYNFQS-----TNLKCNLHLLAKQELFIRRNGK-LMFLRKADQLEIGDIAYRPL 420
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTV-KINPLICGPLSADFDGDCIHLFYPQSL 399
DGD + INRPP+ H+HSL ALS + H+V INPL C P + DFDGDC+H + PQS+
Sbjct: 421 QDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSI 480
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS 458
++ E+ EL S+ QLL+ +G + L D+L + ++ FL K+ QQL M LS
Sbjct: 481 RSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLS 540
Query: 459 -PLPRPALSKARC--SARWTALQILQSVLPPGFD-SCGDRYLIKKSEVLKGDFDRDTIPS 514
P PA+ K+ + WT Q+ +LP G + SC I SEVL + +
Sbjct: 541 VSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQN 600
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL------------- 561
+ + + +F + G + L+F S Q +L E L G SVSL D +
Sbjct: 601 NTSGLFSVMFKQYGC-KALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEG 659
Query: 562 SKAALWNIQKEIQALYSLL----YHRMSTQNELVD--------------------LQIEN 597
K AL+ ++ + LL + +E D + ++
Sbjct: 660 VKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRSSIMAFKD 719
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFY------- 649
R + +V + + +++ +I++ S ++ K QQ +GLQL + + F
Sbjct: 720 VFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSC 779
Query: 650 -----SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
K+L + S ER+ +L Y +IK F GL+P E + H+IS R
Sbjct: 780 ISWNGQKSLNYEAESTSERVGGQNL------YAVIKNSFIEGLNPLECLLHAISGRANFF 833
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEP 764
S PGTL + LM LRD+ + YDGTVR+ I+QF Y L G P
Sbjct: 834 --SENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDDLVDKL---GAP 888
Query: 765 VGVLAATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYL 818
VG AA ++S AY A+ L+ SP N ++E+ C + N+ D +L+L
Sbjct: 889 VGCRAACSISEAAYGALEHPVNGLEDSPLMN-----LQEVFKCHKATNSG--DHIGLLFL 941
Query: 819 NDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKIL 878
+ +Y E A+ VKN L+RV+ D +I Y + I ++ H H+NK +
Sbjct: 942 SRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGMWTTHFHINKAM 1001
Query: 879 LEDLRISM 886
++ R+ +
Sbjct: 1002 MKKKRLGL 1009
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 972 IKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV 1030
I W + + L ++ T + + +EHL+++A+S++ G +S G K L++
Sbjct: 1153 IDSAWKYFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISS 1212
Query: 1031 PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQ 1090
PF+EA P + F AA++ DNL + A +WGK GT F+++ + E Q
Sbjct: 1213 PFSEACFSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQ 1272
Query: 1091 DDGVDVYDFL 1100
++ +YDFL
Sbjct: 1273 NES--IYDFL 1280
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
E + I+F L T ++ +S SI S + +P LGLP +CE+CG+ C+G
Sbjct: 9 EAILNAIKFDLMTSTDM--EKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDG 66
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
HFG +L +++P I ++ + R+ C +E + E K
Sbjct: 67 HFGVTKLAATVHNPYFIDDVVHFL-------------NRICPGCLSPREGIDTKRLEREK 113
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
A Y +DG L Y + LS P + S + + S V++++ I+ +
Sbjct: 114 VQATCKYCSKDGSKL-YPSIVFKTLSSPRVLLFKSKLHRNAS------VMERISIVAEAA 166
Query: 191 SGTPN 195
PN
Sbjct: 167 DRMPN 171
>gi|356540468|ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1461
Score = 239 bits (609), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 263/929 (28%), Positives = 417/929 (44%), Gaps = 134/929 (14%)
Query: 137 YFPQDGYI-LEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN 195
Y P+ + L PV PNC V ++ +S+ S LS + K++ R GTPN
Sbjct: 213 YIPRKNLLYLNCFPVTPNCHRVTEVPYAISS-GSRLSFDDRTRSCKKLVDFR----GTPN 267
Query: 196 FESQEVESNDLQLAVGQYLEVRGTAKSS-RDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
E+ S L L T S D+ R NS+ W+ + + + K
Sbjct: 268 ----ELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENACNSSGLRWI---KDVVLGK 320
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 314
+ S R+V+ GD ++E+G+P IA+ + E VN N L + +L +
Sbjct: 321 RNDSSLRTVVVGDPDLELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLL----EK 376
Query: 315 SSSYSLREGSKGHTF----LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-D 369
R GSK H + L+ G ++R + DGD V INRPP+ H+HS+ AL+V V
Sbjct: 377 GKIDVCRNGSKVHLYKKEDLQIGDKIYRPLADGDKVLINRPPSIHQHSMIALTVRVLPIS 436
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
V INPL C PL DFDGDC+H + PQS+ A+ E+ EL ++++QL++ +G L L+
Sbjct: 437 SVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQ 496
Query: 430 DALLSLKVMFKKYFLDKAF-TQQLAMFALSP--LPRPALSKARC--SARWTALQILQSVL 484
D+L + ++ + L + QQL M ++S L PA+ KA S+ W+ QI +L
Sbjct: 497 DSLTAAYLLMEDGVLLNVYQMQQLQMLSISDKRLIPPAVVKAPSSNSSLWSGKQIFSMLL 556
Query: 485 PPGFD--------SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFF 536
P FD D L+ SE + RD+ +V +V E + L F
Sbjct: 557 PYDFDYSFPSDGVVVSDGELVSSSEA--SGWLRDSDYNVFQSLV-----EHYQGKTLNFL 609
Query: 537 DSLQPLLMENLFADGFSVSLEDFSLS--KAALWNIQKEI--------------QALYSLL 580
+ Q +L E L GFSVSL D LS A N+ +EI Q L
Sbjct: 610 YTAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCY 669
Query: 581 YHRMS-----TQNEL-VD---LQIENHI----------------RHVKMLVAKFILKSST 615
+S ++N + VD L E I R+++ L K+ K +
Sbjct: 670 CDFLSGSIQESENAITVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNA 729
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGLQ-----LSDR-------GKFYSKTLVEDIASHFER 663
+ + S + K+VQ + LG+Q LS R + S+ ++ I
Sbjct: 730 FLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGT 789
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+ + P Y +++ F GL+P E HS++ R+ L PGTL + LM
Sbjct: 790 LESVQSYIP---YAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMFF 844
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-----HSLFPAGEPVGVLAATAMSNPAY 778
+RD+ YDGTVRN+ N +IQF Y + S GEPVG ++A A+S AY
Sbjct: 845 MRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAAY 904
Query: 779 KA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERA 832
A +L++SP N +K +L C N D+ V L+L++ +++ E A
Sbjct: 905 SALGQPVSLLETSPLLN-----LKNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEYA 957
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE--GLVGHIHLNKILLEDLRISMHDIL 890
A VKN L+R+ + +I + + S ++ V H HL+K ++ ++ +H I+
Sbjct: 958 ALEVKNYLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSII 1017
Query: 891 PKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCS------FQQSCADKRSNMPCLMFVL 944
+ + ++K KV F N +S +C + + + DK+ C+ +
Sbjct: 1018 ---DSLYQRYYSQRKDSKVC--FTNLKISSKKCSADSMAKEGEDTSIDKKEGDDCITVTI 1072
Query: 945 RGASDSYLDKLSGVLANMIYPVLLETIIK 973
S + + +L V +++ P LL T IK
Sbjct: 1073 VENSKNPI-QLDSV-RDLVIPFLLGTAIK 1099
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 972 IKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV 1030
I W + L+++ + K +L +HL L+ANS++C+G+ VG N+ G + +V
Sbjct: 1177 IDAGWQYFFNSLASATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSS 1236
Query: 1031 PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
PF +A P CF KAA+ TDNL + A +WG +++GT FD+++
Sbjct: 1237 PFVQACFANPGSCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIY 1287
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 31 SISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCE--GHFGYIELPIPIYHPSHIS 88
+I+ I+ A Q+ LG P +C +CG+ + CE GHFG I+ P PI HP +S
Sbjct: 36 NIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEVSGHFGVIKFPTPILHPYFMS 95
Query: 89 EL 90
E+
Sbjct: 96 EI 97
>gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 239 bits (609), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 232/848 (27%), Positives = 374/848 (44%), Gaps = 111/848 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGV--ST 166
+++ S +V MLK+ E K+ + ++ L LPV PNC V +I G+
Sbjct: 203 KIILSPYQVFYMLKKSDPELIKQFVSR----RELLFLSCLPVTPNCHRVVEIGYGLPDGR 258
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDV 226
++ D K+++ I R P+F + V KSS+
Sbjct: 259 LTFDDRTKAYKRMVDVSRRIDDYRQ-HPHFSVLASSLVSSR--------VSECLKSSKLY 309
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ ++ WL + + + K S RS++ GD ++ EIG+P +++ +
Sbjct: 310 SKKADGETSTDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLV 366
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP------GQVVHRRI 340
E V+ +N N C + +R K FLR G + +R +
Sbjct: 367 VSEHVSSYNFQS-----TNLKCNLHLLAKQELFIRRNGK-LMFLRKADQLEIGDIAYRPL 420
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTV-KINPLICGPLSADFDGDCIHLFYPQSL 399
DGD + INRPP+ H+HSL ALS + H+V INPL C P + DFDGDC+H + PQS+
Sbjct: 421 QDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSI 480
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS 458
++ E+ EL S+ QLL+ +G + L D+L + ++ FL K+ QQL M LS
Sbjct: 481 RSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLS 540
Query: 459 -PLPRPALSKARC--SARWTALQILQSVLPPGFD-SCGDRYLIKKSEVLKGDFDRDTIPS 514
P PA+ K+ + WT Q+ +LP G + SC I SEVL + +
Sbjct: 541 VSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQN 600
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL------------- 561
+ + + +F + G + L+F S Q +L E L G SVSL D +
Sbjct: 601 NTSGLFSVMFKQYGC-KALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEG 659
Query: 562 SKAALWNIQKEIQALYSLL----YHRMSTQNELVD--------------------LQIEN 597
K AL+ ++ + LL + +E D + ++
Sbjct: 660 VKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRSSIMAFKD 719
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFY------- 649
R + +V + + +++ +I++ S ++ K QQ +GLQL + + F
Sbjct: 720 VFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSC 779
Query: 650 -----SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
K+L + S ER+ +L Y +IK F GL+P E + H+IS R
Sbjct: 780 ISWNGQKSLNYEAESTSERVGGQNL------YAVIKNSFIEGLNPLECLLHAISGRANFF 833
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEP 764
S PGTL + LM LRD+ + YDGTVR+ I+QF Y L G P
Sbjct: 834 --SENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDDLVDKL---GAP 888
Query: 765 VGVLAATAMSNPAYKAV------LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYL 818
VG AA ++S AY A+ L+ SP N ++E+ C + N+ D +L+L
Sbjct: 889 VGCRAACSISEAAYGALEHPVNGLEDSPLMN-----LQEVFKCHKATNSG--DHIGLLFL 941
Query: 819 NDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKIL 878
+ +Y E A+ VKN L+RV+ D +I Y + I ++ H H+NK +
Sbjct: 942 SRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGMWTTHFHINKAM 1001
Query: 879 LEDLRISM 886
++ R+ +
Sbjct: 1002 MKKKRLGL 1009
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 972 IKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV 1030
I W + + L ++ T + + +EHL+++A+S++ G +S G K L++
Sbjct: 1153 IDSAWKYFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISS 1212
Query: 1031 PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQ 1090
PF+EA P + F AA++ DNL + A +WGK GT F+++ + E Q
Sbjct: 1213 PFSEACFSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQ 1272
Query: 1091 DDGVDVYDFL 1100
++ +YDFL
Sbjct: 1273 NES--IYDFL 1280
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
E + I+F L T ++ +S SI S + +P LGLP +CE+CG+ C+G
Sbjct: 9 EAILNAIKFDLMTSTDM--EKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDG 66
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
HFG +L +++P I ++ + R+ C +E + E K
Sbjct: 67 HFGVTKLAATVHNPYFIDDVVHFL-------------NRICPGCLSPREGIDTKRLEREK 113
Query: 131 KLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
A Y+ +DG L Y + LS P + S + + S V++++ I+ +
Sbjct: 114 VQATCKYYSKDGSKL-YPSIVFKTLSSPRVLLFKSKLHRNAS------VMERISIVAEAA 166
Query: 191 SGTPN 195
PN
Sbjct: 167 DRMPN 171
>gi|449460519|ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus]
gi|449494342|ref|XP_004159519.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 236 bits (601), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 211/730 (28%), Positives = 327/730 (44%), Gaps = 95/730 (13%)
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
+T+ + L ++ + + K S R V+ GD ++EIG+P +A+R+ E ++ N+
Sbjct: 313 ATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMK 372
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGS----KGHTFLRPGQVVHRRIMDGDTVFINRPPT 353
L L + Y REG + L G ++R + DGD V +NRPP+
Sbjct: 373 KLS----TSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPS 428
Query: 354 THKHSLQALSVYVHDDHTV-KINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
H+HSL ALSV + V +NPL C P DFDGDC+H + PQSL A+ EV EL S++
Sbjct: 429 IHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLD 488
Query: 413 KQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAF-TQQLAMFALSPLPRPALSKARC- 470
KQL + +G L L+ D+L + ++ + F QQL M L L PA+ K+
Sbjct: 489 KQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLL 548
Query: 471 -SARWTALQILQSVLPPGFD--SCGDRYLIKKSEVLKGD---FDRDTIPSVINEIVTSIF 524
+ WT Q+ +LPP FD S I+K E++ + + RD+ ++ ++
Sbjct: 549 RNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRNLFQALI---- 604
Query: 525 FEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS---------------------- 562
E + L++ Q +L E L G SVSL D LS
Sbjct: 605 -EHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEE 663
Query: 563 ----KAALWNIQKEI--------QALYSLLYHRM-------STQNELVDLQIENHIRHVK 603
K + + KEI Q L S+ R+ + N+ + R ++
Sbjct: 664 TCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQ 723
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
LV K+ K ++L + + S + K+VQ + LGLQ S +S A+ +
Sbjct: 724 NLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQ 783
Query: 664 IYPM--------DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
P D Y +++ F GL+P+E HS++ R+ S PGT
Sbjct: 784 KMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSF--SDNAEVPGT 841
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP--------AGEPVGV 767
L + L ++RD+ YDGTVRN N ++QF Y ++ S S G PVG
Sbjct: 842 LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESENNNRDRGIGGHPVGS 901
Query: 768 LAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDC 821
LAA A+S AY A +L++SP N +K +L C N+ + L+L++
Sbjct: 902 LAACAISEAAYSALDQPISLLEASPLLN-----LKRVLECGSKRNS--TKQTFSLFLSEK 954
Query: 822 GCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK-PEIISDDEGLVGHIHLNKILLE 880
R Y E A VKN L+RV KD +I + P V H H+ K +L+
Sbjct: 955 LSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILK 1014
Query: 881 DLRISMHDIL 890
R+ M+ ++
Sbjct: 1015 KRRLKMNSVI 1024
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 972 IKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV 1030
I W + L ++ V K + EHL+L++NS++ G+ VG N G V+
Sbjct: 1175 IDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKT 1234
Query: 1031 PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQ 1090
PF +A P C KAA+ DNLS + A +WG+ ++GTG +FD+L+ + E N+
Sbjct: 1235 PFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNK 1294
Query: 1091 DDGVDVYDFL----HMVRSSTGIEELDTGCLGEE 1120
VDVY+ L + +T IE LD + E+
Sbjct: 1295 P--VDVYNLLGGQSTCEKQNTKIESLDKNTISEK 1326
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 127/312 (40%), Gaps = 70/312 (22%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCG 61
E++ I G + GI F ++ Q++I +I+ ++ A+++++P LGLP +C +CG
Sbjct: 4 EQDGELPIPSGLLTGINFSVSNQQDI--ENIAVITVDAANEVSDPKLGLPNPSYQCTTCG 61
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEML 121
S CEGHFG I+ P I HP +SE VAQ L C K +
Sbjct: 62 ASSLKFCEGHFGVIKFPYTIIHPYFLSE----------------VAQVLNKVCPGCKSV- 104
Query: 122 KRIPEETRKKLAGKGYFPQDGYILEYLPVPPNC-LSVPDISDGVSTMSSDLSIA-MLKKV 179
R++L GK P Y P C + D M LS M KK
Sbjct: 105 -------RQELWGKVEDPTSDY-----NRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKS 152
Query: 180 LKQVEI---------IRSSRSGTP----NF----ESQEVESNDLQLAVGQYLEVRGTAKS 222
+ VE+ R ++ G P +F E QE + + +V K
Sbjct: 153 MIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLK- 211
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
D+D +F K ++ + +LF+ +T +++ RV E+ F
Sbjct: 212 --DIDPKF---------LKKFVPAIDSLFLNSFP-------VTPNSH-RVTEMAHSFSNG 252
Query: 283 QRITFEERVNVH 294
QR+ F+ER +
Sbjct: 253 QRLIFDERTRAY 264
>gi|356495649|ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1622
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 267/966 (27%), Positives = 428/966 (44%), Gaps = 140/966 (14%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYI-LEYLPVPPNCLSVP 158
Q + + V +R+LS +V +L + + +K Y P+ + L PV PNC V
Sbjct: 175 QQEENYVNRRVLSPV-QVNYLLNDVDPDFIEK-----YIPRKNLLCLNCFPVTPNCHRVT 228
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRG 218
++ +S+ S LS + K++ R GT N E+ S L L
Sbjct: 229 EVPYAISS-GSRLSFDDRTRSCKKLVDFR----GTAN----ELSSRVLDCLRISKLNPDK 279
Query: 219 TAKSS-RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
T S D+ R NS+ W++ + L R S F R+V+ GD ++EIG+
Sbjct: 280 TPNSIFADIQQRKIGENAFNSSGLRWIKDV-VLGKRNDSSF--RTVVVGDPDLELSEIGI 336
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF----LRPG 333
P IA+ + E VN N L + L + R+GS H + L+ G
Sbjct: 337 PCHIAESLQVSEYVNRQNREKLLYCCE----LHLLEKGKINVCRKGSIVHLYKKEDLQIG 392
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDCIH 392
+R + DGD V INRPP+ H+HS+ +L+V V V INPL C PL DFDGDC+H
Sbjct: 393 DKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLH 452
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAF-TQQ 451
+ PQS+ A+ E+ EL ++++QL++ +G L L+ D+L + ++ + L + QQ
Sbjct: 453 GYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQ 512
Query: 452 LAMFALSP--LPRPALSKARC--SARWTALQILQSVLPPGFDS--------CGDRYLIKK 499
L M ++S L PA+ KA S+ W Q+ +LP FD D L+
Sbjct: 513 LQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSS 572
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
SE + RD+ +V +V E + L F + Q +L E L GFSVSL D
Sbjct: 573 SEA--SGWLRDSDYNVFQSLV-----EHYQGKTLNFLYAAQKVLCEWLSMTGFSVSLSDL 625
Query: 560 SLS--KAALWNIQKEI--------------QALYSLLYHRMS-----TQNELV----DLQ 594
LS A N+ +EI Q L +S ++N + L
Sbjct: 626 YLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESENAITVNADRLN 685
Query: 595 IENHI----------------RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
E I R+++ L K+ K ++ + + S + K+VQ + L
Sbjct: 686 YERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCL 745
Query: 639 GLQ-----LSDR-------GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
G+Q LS R + S+ V+ I + + P Y +++ F G
Sbjct: 746 GMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIP---YAVVESSFLTG 802
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L+P E HS++ R+ L PGTL + LM +RD+ YDGTVRN+ N +IQF
Sbjct: 803 LNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQF 860
Query: 747 DYAVNARKS-----HSLFPAGEPVGVLAATAMSNPAYKA------VLDSSPSSNNSWELM 795
Y + S GE VG ++A A+S AY A +L++SP N +
Sbjct: 861 SYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLN-----L 915
Query: 796 KEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIE 855
K +L C N D+ V L+L++ +++ E AA VKN L+R+ + + +I
Sbjct: 916 KNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMII 973
Query: 856 YKKPEIISDDE--GLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFF 913
+ + S ++ V H HL+K ++ ++ +H I+ + + ++K KV F
Sbjct: 974 FTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSII---DSLYQRYYSQRKDSKVC--F 1028
Query: 914 KNTSLSISECCS------FQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVL 967
N +S +C + + + DK C+M + S + + S + +++ P L
Sbjct: 1029 TNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDS--VRDLVIPFL 1086
Query: 968 LETIIK 973
L T I+
Sbjct: 1087 LGTAIQ 1092
Score = 83.6 bits (205), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
L+ + + K +L +HL L+ANS++C+G+ VG N+ G + +V PF +A P
Sbjct: 1181 LACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPG 1240
Query: 1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFL 1100
CF KAA+ TDNL + +WG +++GT FD+++ + + + VDVY+ L
Sbjct: 1241 SCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKS--VDVYELL 1297
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 31 SISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCE--GHFGYIELPIPIYHPSHIS 88
+IS I+ A Q+ LGLP +C +CGT + CE GHFG I+ P PI HP +
Sbjct: 29 NISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEVSGHFGVIKFPTPILHPYFML 88
Query: 89 EL 90
E+
Sbjct: 89 EI 90
>gi|38605943|emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
Length = 1664
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 286/1164 (24%), Positives = 482/1164 (41%), Gaps = 172/1164 (14%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSE------- 64
++ I+F L T ++ +S +I + N LGLP +C +CG+
Sbjct: 45 AELNAIKFSLMTSSDM--EKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGK 102
Query: 65 ---PGKCEGHFGYIELPIPIYHPSHISELK----------LTMYAFQLQIKNDGVAQRLL 111
GK GHFG I+L +++ I E+ LT+ K DG +
Sbjct: 103 KKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQGT 162
Query: 112 SSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
C K+ K P K L + V + +++ GV+ S +
Sbjct: 163 CKYCS-KDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNK 221
Query: 172 S---------------------IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAV 210
+ + KK+L ++ + P +Q+ + + V
Sbjct: 222 APHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQDDRTKAYKRMV 281
Query: 211 GQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
Y S+ D S D T WL + + + K S + RS++ GD
Sbjct: 282 DLY---------SKKSDDESSASTDTYGT--KWL---KDIILSKRSDNAFRSIMVGDPKI 327
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQ-----ELVDNKLCLTYSDGSSSYSLREGSK 325
+NEIG+P +A + E+V+ +N + L+ ++ L +G+ + +R+ ++
Sbjct: 328 NLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIF-VRKANQ 386
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV-YVHDDHTVKINPLICGPLSA 384
L G + +R + DGD V +N PP+ H+HSL ALS + V INPL C P
Sbjct: 387 ----LEIGDIAYRLLQDGDLVLVNSPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKG 442
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYF 443
DFDGDC+H + PQ L ++ E+ EL + QLL+ +G + L D+L + ++ F
Sbjct: 443 DFDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVF 502
Query: 444 LDKAFTQQLAMF----ALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKK 499
L+KA QQL M +L+P+P S WT L + D Y +K
Sbjct: 503 LEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTDLYLF-----------SDHYSRRK 551
Query: 500 -SEVLKGDFDRDTIPSVINEI-VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
SE + D I +I + S+ L+++D D S + E
Sbjct: 552 LSEEVHLALDEAEEAFQIKQILLNSVSIPN-----LKYYDG----------GDDRSNTDE 596
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLG 617
++ +L I+ + + S+ N+L+ +V +++ K +++
Sbjct: 597 QSGFTQVSLPIIRSSMTSFKSVF-------NDLLK------------MVQQYVSKDNSMM 637
Query: 618 YLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK- 675
+I+S S +V K VQQ +GLQL + + F + + ++ + + ++ T++
Sbjct: 638 TMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSRNCEITDGTSEC 697
Query: 676 ------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
Y +++ F GL+P E + H+IS R S PGTL + LM LRD +
Sbjct: 698 VGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTRKLMYHLRDTYV 755
Query: 730 CYDGTVRNVCSNSIIQFDY--AVNARKSHSL-FPAGEPVGVLAATAMSNPAYKAV----- 781
YDGTVR+ I++F Y A H L G PVG AA ++S AY A+
Sbjct: 756 AYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAACSISEAAYGALDHPVN 815
Query: 782 -LDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQL 840
L+ SP N ++E+L C N+ +D +L+L+ +Y E A+ VK+ L
Sbjct: 816 SLEDSPLMN-----LQEVLKCHKGTNS--LDHTGLLFLSKHLRKYRYGFEYASLEVKDHL 868
Query: 841 KRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSF 900
+RV D ++ K+ + E +V I +++ LR +++ +P +
Sbjct: 869 ERVDFSDMVDTETMKIKRLRL----EFIVREI-IDQ--YNTLRKQLNNAIPSVSISNSET 921
Query: 901 CKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLA 960
K K + KN L C Q+C C+ V++ +S + +L V+
Sbjct: 922 LHLKMENKSGKLGKN--LGTGNECVKNQTC--------CVTMVVQVEINS-MSQLD-VIK 969
Query: 961 NMIYPVLLETIIK---ENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSG 1017
+ P +L T++K E V+ + +V K V K H L G
Sbjct: 970 ERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVVCKIHNRCYWKEYPSTA-LTGCGRL 1028
Query: 1018 GYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRF 1077
+ Q F A P F AA++ DNLS + A +WGK G+ F
Sbjct: 1029 PICEWAVPWAKQSRFKAAKDLRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPF 1088
Query: 1078 DLLWQTENEEFNQDDGVDVYDFLH 1101
+L+ ++ E Q++ +YDFLH
Sbjct: 1089 KILYSGKSHETKQNE--HIYDFLH 1110
>gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 1475
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 239/816 (29%), Positives = 378/816 (46%), Gaps = 129/816 (15%)
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
L ++ + + K + S R V+ GD + +EIG+P IA+R+ E + N + L
Sbjct: 313 LRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCC 372
Query: 304 DNKLCLTYSDGSSSYSLREGS----KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
+ +L + + REG + LR G +++R + DGDTV INRPP+ H+HSL
Sbjct: 373 EVRLL----EKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSL 428
Query: 360 QALSVYVHDDHTV-KINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
ALSV V +V INPLIC P DFDGDC+H + PQS+ + E+ EL +++KQL++
Sbjct: 429 IALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINV 488
Query: 419 HNGNLNLQLATDALLSLK-VMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC--SARWT 475
NG L + D+L++ VM L QQL MF L PA+ KA WT
Sbjct: 489 QNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGCAWT 548
Query: 476 ALQILQSVLPPGFDS---CGDRYLIKKSEVL--KGDF-DRDTIPSVINEIVTSIFFEKGP 529
Q++ +LP GFD D Y I+ E++ +G F RDT ++ ++ ++
Sbjct: 549 GKQLISMLLPRGFDHECPSSDVY-IRDGELISSEGSFWLRDTDGNLFQSLI-----KQCQ 602
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLED------------------FSLSKAA------ 565
++VL+F Q +L E L G SVSL D F L A
Sbjct: 603 DQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMK 662
Query: 566 ----------LWNIQKEIQALYSL------LYHRMSTQNELVDLQIE--NHI-RHVKMLV 606
L +I ++ Q YS+ L H L ++ H+ R ++ L
Sbjct: 663 QFMVDSCRDFLASIDEDEQ--YSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLG 720
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ-----LSDRGKF------YSKTLVE 655
K+ K + L + S S + KVVQ + LGLQ LS R ++K E
Sbjct: 721 YKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKAE 780
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
+ A R Y P+A +++GCF GL+P E HS+++RE + L PGT
Sbjct: 781 N-AVECARSY-----IPSA---VVEGCFLTGLNPLECFVHSVTSRESSFSDNADL--PGT 829
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP-----------AGEP 764
L + LM +RDV YDG+VR+ N +IQF Y ++ +S + AG+P
Sbjct: 830 LTRRLMFFMRDVHAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKP 889
Query: 765 VGVLAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYL 818
VG LAA ++S AY A +L+ SP N +K +L C + +N + + L+L
Sbjct: 890 VGSLAACSISEAAYSALDQPISLLEKSPLLN-----LKNVLECGLKKSN--AHKSMSLFL 942
Query: 819 NDCGCGRKYCQERAAYMVKNQLKRVSLKD-AAVEFLIEYKKPEIISDDEGLVGHIHLNKI 877
++ R++ E A V++ L+R+ D +V +I + E + V H H+ K
Sbjct: 943 SEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKE 1002
Query: 878 LLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNM 937
+++ +++ I+ L CK VQ + CS + +K +
Sbjct: 1003 IMKKRNLNVDSII----NILNGRCKSNTNLPNVQIS-------CKSCSIADNHREKEETL 1051
Query: 938 PCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK 973
C+ + S + +L+ + +++ P LLET++K
Sbjct: 1052 -CITVTIVERSKNSSTRLATI-QDLMIPFLLETVLK 1085
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRL ++++ V K VL EH++L+AN ++ G+ VG N+ G+K +V PF +A
Sbjct: 1172 QRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSS 1231
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
P CF KAA+ D+L + A +WGK +VGTG +FD+++
Sbjct: 1232 PGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGTG-QFDIVY 1272
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFG 73
+ I FG++T+ E +S +I S++ + LGLP +C +CG+ + CEGHFG
Sbjct: 17 LTAITFGVSTEAE--KEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCEGHFG 74
Query: 74 YIELPIPIYHPSHISEL 90
I+ P I HP ++SE+
Sbjct: 75 VIKFPFTILHPYYLSEV 91
>gi|68300836|gb|AAY89357.1| RNA polymerase IV largest subunit [Marchantia polymorpha]
Length = 1008
Score = 226 bits (575), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 210/691 (30%), Positives = 315/691 (45%), Gaps = 111/691 (16%)
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLK-VMF 439
P +ADFDGDC+H+F PQ+ ++AE+ +L ++ Q+L S + N L L+ D +L+ V
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLMTIPAQILPSPDENTILGLSQDYVLATYLVTS 60
Query: 440 KKYFLDKAFTQQLAMFALSPLPRPALSKA-RCSARWTALQILQSVLPPGF--DSCGDRYL 496
FL K QLAM+ LP P + K+ + WT Q++ +P GF S
Sbjct: 61 SPLFLPKDSMHQLAMWTKKQLPVPTIVKSPKLGPLWTGKQVIDLAIPEGFSFQSNNGATR 120
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I E+L + + S + I +K + +E D Q +L E L + GFSVSL
Sbjct: 121 IHDGEILSCGEKSNWLASTKG--LVRIIAQKNTDAAVEHIDCSQAVLREWLLSQGFSVSL 178
Query: 557 EDF------------------SLSKAA----------LWNIQKEIQALYSLL-----YHR 583
EDF +L A + NI A S+L R
Sbjct: 179 EDFYAAPDQDMRRKLKYKIEDNLEHAQCMFVCRGDKKILNINTSSNASMSILDSAAPSER 238
Query: 584 MSTQNELVDLQIENHIRHVKMLVAKFILK---SSTLGYLIDSKSDSAVSKVVQQAGFLGL 640
++ L D I + + + FI S+ L ++ S S + KV+QQ G LG
Sbjct: 239 RRRRHGLEDAAISSFRQTQSQIGETFIESISDSNCLLTMVRSGSKGSNLKVMQQIGSLGF 298
Query: 641 QLSDRGKFYSK----TLVEDIASHFERIYPM--DLNYPTAKYGLIKGCFFHGLDPYEEMT 694
Q+ + S LV AS Y M DL GL+K GL+P+E
Sbjct: 299 QVIKGEELLSTHKNPKLVRLAASMG---YSMENDLQDIWEIRGLVKSSLLDGLEPHEFFV 355
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY------ 748
H+IS R+ + R S ++EPG LFK LM LRD+ I YDGTVRN+ IIQF+Y
Sbjct: 356 HAISVRDGLFRQSLDIAEPGELFKRLMLFLRDIHIAYDGTVRNMGGLEIIQFEYDGGKCM 415
Query: 749 -----AVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS----PSSNNSWELMKEIL 799
N + ++ P G+ VG+LAATA+S PAY+ +L+++ EL++E L
Sbjct: 416 TQDSENKNTLSNKTVMP-GDAVGILAATAISQPAYQVMLEATQCLASRKIRPLELLQESL 474
Query: 800 LCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKP 859
R + DR IL L+ C KYC+ER ++++L+ V+++ A E I Y
Sbjct: 475 FPRSTSKLKESDRVSILRLHRCKSDGKYCEERRVLKLQDELQPVTMEILATETAIAYSS- 533
Query: 860 EIISDDEGL---------------VGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKK 904
+ EGL VGH+ L+K++L + +IS IL + K K
Sbjct: 534 DSSEQWEGLDCAATELKQTEFFPWVGHVQLDKMVLTEKKISQEMILDRLH------SKVK 587
Query: 905 KMKKVVQFFK--NTSLSISECCS-----FQQSCADKRSNM--PCLMFVL----RGASDSY 951
K V + F+ N I + C+ +Q++ ++ + PCL F+L RG S
Sbjct: 588 IHKSVSRKFRIGNIVFCIRDSCTCDMNIYQETVKLRQKEVVGPCLHFLLTRSTRGKVRSI 647
Query: 952 LD---------KLSGVLANMIYPVLLETIIK 973
+L VL N I P +L+T++K
Sbjct: 648 KTVKEVSNETVELLEVLQNFIIPEILKTVVK 678
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 996 EHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDN 1055
+HL L+A+ M +G++ G S GY+ RSL PFT P K F +A K T+
Sbjct: 789 KHLKLVADFMVYSGEVQGLTSYGYRDWMRSLKFSSPFTAGAFRAPIKHFLEAGRKGATER 848
Query: 1056 LSSVVAACSWGKHVAVGTGSRFDLLWQTENE---------------EFNQDDGVDVYDFL 1100
S V+A+ +GK V +GTG+ FDL E + E + VDV L
Sbjct: 849 FSGVLASSVFGKKVPLGTGAVFDLNLNMETKFTSSSSTNLNSEGSAESDPGGSVDVLARL 908
Query: 1101 HMVRSSTGIEELDTGCLGEEVDGLE--DEFDWSLSP 1134
+ + G+++L + DG +W SP
Sbjct: 909 IELNTEIGVQDLSAKSEVDTYDGNNSCQVIEWGSSP 944
>gi|68300847|gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 222/793 (27%), Positives = 362/793 (45%), Gaps = 109/793 (13%)
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSL 320
R+V+ GD RV+EIG+P EIA+ + + + + N + L+ D + +G S +
Sbjct: 2 RTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCD---LMLRRNGQFSVT- 57
Query: 321 REGSK----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD-DHTVKIN 375
R+G K LR G ++R ++DGD V INRPP+ H+HSL ALSV + + V IN
Sbjct: 58 RDGQKTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSIN 117
Query: 376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
PL C PL DFDGDC+H + PQS+ + E+ EL ++ KQL++ +G L L+ D+L +
Sbjct: 118 PLTCSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAA 177
Query: 436 KVMFKK-YFLDKAFTQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFD--S 490
++ + FL+K QQL MF+ + LP S +R ++ WT Q+ +LP F+ +
Sbjct: 178 HLISQDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSN 237
Query: 491 CGDRYLIKKSEVLK----GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
+ IK E++ + RD+ E + PE+ L+ + Q +L E
Sbjct: 238 ASNGVGIKHGELVSFSDGSSWLRDS-----GENLFQCLLRHCPEKTLDILHAAQEVLCEW 292
Query: 547 LFADGFSVSLEDFSLS------KAALWNI-----QKEIQALYSLLY----HRMSTQNELV 591
L G SVSL D LS K L +I + E + SLL R +N
Sbjct: 293 LSRRGLSVSLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLMVGHNQRFLIENSEE 352
Query: 592 D---LQIENHI----------------------RHVKMLVAKFILKSSTLGYLIDSKSDS 626
D L+ + H+ R ++ L+ + +++L ++ + S
Sbjct: 353 DEDMLKSKEHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYAGDTNSLLAMLKAGSKG 412
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS-----HFERIYPMDLNYPTAKY----G 677
+ K+ Q + LGLQ S +S AS + +Y +D
Sbjct: 413 NLQKLFQHSMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLYRLDGTREILDSYIPCT 472
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ + GL+P E HS++TR+ +S GTL + LM +RD++ YDGTVRN
Sbjct: 473 VVSSSYLMGLNPLESFLHSLTTRDSSFSGQADVS--GTLTRKLMFFMRDIITGYDGTVRN 530
Query: 738 VCSNSIIQFDYAVN--ARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWEL- 794
+ I+QFDY + + + G PVG LAA A+S AY A LD S+ L
Sbjct: 531 SYGSQIVQFDYGTGDMSAVNSDVLMGGHPVGSLAACAISEAAYSA-LDQPVSALEPSPLI 589
Query: 795 -MKEILLCRVSFNNDP------IDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 847
+K++L C V N + RR+ ++N E A VK+ ++ + +
Sbjct: 590 ALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGF--------EFGALEVKDHMESLLFSE 641
Query: 848 AAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMK 907
E I + E ++ V + +NK + + + ++ + + KK K+K
Sbjct: 642 VVSEVTISFST-ERRTNISPWVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLK 700
Query: 908 KVVQFFKNTSLSISECCSFQQ-------SCADKRSNMPCLMFVLRGASDSYLDKLSGVLA 960
+N S ++ F + S A ++ + L F G+ Y ++ L
Sbjct: 701 LPNLLIENKDCSEAD---FHEDSSRICISVAVSQNELSNLHF---GSLKEY--EILDYLR 752
Query: 961 NMIYPVLLETIIK 973
NM+ PVLL T++K
Sbjct: 753 NMVIPVLLRTVVK 765
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
L+++++ K +L EHLI AN ++ G+ V N+ G + + PF +A P
Sbjct: 854 LNSAISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPS 913
Query: 1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
CF KAA+ DNL V + +WG+ +GTG +FD+++ + E ++ DVY L+
Sbjct: 914 DCFIKAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKP--TDVYSLLN 971
>gi|357481757|ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1687
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 213/747 (28%), Positives = 343/747 (45%), Gaps = 96/747 (12%)
Query: 237 NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
N+ + L M+ + + K + + R+V+ GD ++EIG+P +IA+ + E VN N
Sbjct: 464 NACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNR 523
Query: 297 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF----LRPGQVVHRRIMDGDTVFINRPP 352
L + +L + R G+ + L+ G + +R ++DGD V INRPP
Sbjct: 524 QNLLYCCELRLL----EKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPP 579
Query: 353 TTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
+ H+HS+ AL+V V V INP+ C PL DFDGDC+H + PQS+ A+ E+ EL ++
Sbjct: 580 SIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVAL 639
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAF-TQQLAMFALSPLPRPALSKARC 470
++QL++ +G L L+ D+L + ++ + + QQL M L PA+ KA
Sbjct: 640 DRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPS 699
Query: 471 SAR--WTALQILQSVLPPGFDSC--GDRYLIKKSEVL----KGDFDRDTIPSVINEIVTS 522
S W+ Q+ +LP FD + +K E++ + RD+ +V +V
Sbjct: 700 SNTPFWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLV-- 757
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS--KAALWNIQKEI------- 573
E ++L+ Q L E L GFSVSL D LS A N+ +EI
Sbjct: 758 ---EHFQGKILDVLHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVA 814
Query: 574 -QAL---------YSLLYHRMSTQNE---LVDLQIENH-------------------IRH 601
QA YS +NE VD+ NH R+
Sbjct: 815 EQACDFNQLLVDHYSDFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRN 874
Query: 602 VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS--KTLVEDIAS 659
++ L K K ++ + + S + K+VQ + LGLQ S Y + L +
Sbjct: 875 IQSLADKHACKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWN 934
Query: 660 HFERIYPMDLNYPTAK-------YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ ++ M+++ T + + +++ F GL+P E HS++ R+ + L
Sbjct: 935 SQKGLHSMEMSSDTLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADL-- 992
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-HSLFP----AGEPVGV 767
PGTL + LM +RD+ YDGTVRN+ N +IQF Y S S F GEPVG
Sbjct: 993 PGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGA 1052
Query: 768 LAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDC 821
L+A A+S AY A +L++SP N +K +L C D+ V L+L++
Sbjct: 1053 LSACAVSEAAYSALSQPISLLEASPLLN-----LKNVLEC--GSRKKGGDQTVSLFLSEK 1105
Query: 822 GCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE--GLVGHIHLNKILL 879
++ E AA VKN L+R + +I + P+ S + V H HL+K +
Sbjct: 1106 IGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIF-TPQHCSQVKYSPWVCHFHLDKENV 1164
Query: 880 EDLRISMHDILPKCQETLKSFCKKKKM 906
++ +H I+ + SF ++ K+
Sbjct: 1165 TRRKLEVHSIIDSLYQQYDSFRRESKV 1191
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
LS++ + K +L +HL L+ANS++ +G+ VG N+ G + +V PF +A
Sbjct: 1358 HNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSN 1417
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
P F KAA+ DNL + A +WG + +GTG +FD+++ + EE N+ VDVY
Sbjct: 1418 PGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINK--SVDVYGL 1475
Query: 1100 L 1100
L
Sbjct: 1476 L 1476
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFG 73
+ I LA + IS I+ Q+ LGLP C +CG+ + CEGHFG
Sbjct: 165 VYQITVSLAVELGQLHEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFG 224
Query: 74 YIELPIPIYHPSHISEL 90
I+ P I HP ++E+
Sbjct: 225 AIKFPFTILHPYFMAEI 241
>gi|68300831|gb|AAY89355.1| RNA polymerase IV largest subunit [Ceratopteris thalictroides]
Length = 836
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 186/671 (27%), Positives = 297/671 (44%), Gaps = 81/671 (12%)
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKY 442
ADFDGDC+ +F PQSL +K EV EL VE Q+L+SH G L DALL + K+
Sbjct: 2 ADFDGDCLAVFVPQSLESKTEVKELMMVENQMLTSHGGQCTFTLTQDALLGACKLTSPHL 61
Query: 443 FLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEV 502
FL + + M S LP+PA+ K+ WT +Q Q LP + + I E+
Sbjct: 62 FLSRQTMEIACMNTSSTLPKPAVIKSPKGPFWTGVQCFQLSLPSAVNYDMNGVRISCGEI 121
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF--- 559
L D + + N ++ I + G L + +++ LL+E + GF+V L D
Sbjct: 122 LNITHDPEWLGGSRNSLLYQIIQQFGGNVALNYLGAVESLLVEWISRKGFTVGLYDVYAT 181
Query: 560 -------SLSKAALWNIQKE------------IQALYSL-------------------LY 581
L KA NI +E +Q+ SL +Y
Sbjct: 182 ADWTTRDKLKKAIQVNIGEEEKQVRRKLQDLSLQSDISLGEMKLSMGLSVESNAIIPSMY 241
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ 641
RM+ + L +Q H++ K +++ ++ S ++ K +Q FLGLQ
Sbjct: 242 SRMAEKIALKYMQ--KLCSHIESDSVKNANADNSMLEMVRCGSKGSIKKFSEQFAFLGLQ 299
Query: 642 LSDRGKFYSKTLVEDIASHFER----IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSI 697
+GKF T ++ + +Y D + + G++K F GL P E H++
Sbjct: 300 -PYKGKFMHPTKNMQLSCMHQDEQNVMYDQD-GFLWGERGIVKSSFAEGLSPQEFFVHTV 357
Query: 698 STREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHS 757
S RE ++ + +SEPG L+KN++ RDV + YDGTVR+ IIQFDY
Sbjct: 358 SYRETMIHKALRVSEPGYLYKNMVLFARDVCMHYDGTVRSEHGKHIIQFDYGCKESNMPG 417
Query: 758 LFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNN----SWELMKEILLCRVSFNNDPIDRR 813
P GEPVG LAATA+S PAY+ +L+S N+ EL++E + R + + P D R
Sbjct: 418 STPPGEPVGFLAATAISQPAYQMLLESPNQLNDLAFCPLELLQETIYSRKASVSKPNDLR 477
Query: 814 VILYLNDCGCGRKYCQERAAYMVKNQLKRVSLK----DAAVEFL----IEYKKPEIISDD 865
V+LY+ + + +E AA V L+ V+L+ +V+F+ + K + +
Sbjct: 478 VVLYIKEVD---GFSKEAAAMEVSQSLQHVTLEMLLCSLSVKFVGNMQAGFWKGLLPTKK 534
Query: 866 EGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCS 925
+ H+ L++ L + I K T V F C
Sbjct: 535 SPWIVHMLLDQTALSAYNLEAEAIAKKLLNT-----------NSVHSFGALHFVARGSCD 583
Query: 926 FQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIKENWWVRQRLSAS 985
+ S PCL F L A +++ + ++I P +++ ++ + R S
Sbjct: 584 LSCPGCTRLSENPCLSFCLSTAQSPSIEEALSQIRDIIVPHIMKVSVRGD-----RRIKS 638
Query: 986 VTMVAKGVLKE 996
V+++ G+L E
Sbjct: 639 VSILPSGILSE 649
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 64/105 (60%)
Query: 978 VRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1037
+ RL + ++M K V H+I++ MT +G+++G N+ G++ +S SL++ P T++
Sbjct: 727 IYHRLKSILSMFDKTVYDHHVIVITELMTHSGNVIGLNAAGFREISNSLHISAPITQSLF 786
Query: 1038 FMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQ 1082
K + AA + D+LS +AA WGK VGTG++FD+LW+
Sbjct: 787 QSSIKHIQTAALRGKCDDLSGTLAAICWGKLAPVGTGAKFDILWR 831
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 178/637 (27%), Positives = 288/637 (45%), Gaps = 69/637 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 261 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQL-LQFHVATYMDNDIAG 319
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 320 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 372
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKGHT 328
+GVP IA +TF ERV +NI YLQELV N + D LR +
Sbjct: 373 VGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPTVYPGARYVVRDTGERIDLRYNKRADA 432
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 433 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDG 492
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 493 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWN 552
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD 489
Q + ++ +P PA+ K + WT Q+L +P P FD
Sbjct: 553 QVQNILLWVPDWDGTVPTPAIIKPK--PMWTGKQLLSMCIPRGINIFRAPDPKSNNPVFD 610
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D +I+ +++ G ++ T+ + +V +F EKGPE F LQ ++ LF
Sbjct: 611 ---DGMMIENGDIVFGVVEKKTVGASQGGLVHVVFREKGPEATRTLFTGLQQVVNYWLFH 667
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI----QALYSLL---YH---RMS---TQNELVDLQIE 596
+GFS+ + D + + IQK+I Q + ++ YH R S T E + ++E
Sbjct: 668 NGFSIGIGDTIADRGTMDYIQKQIAERKQNVLQIMDDAYHDRLRPSPGMTIRESFEKKVE 727
Query: 597 NHIR----HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ H K + + + + ++ + S + + Q + +G Q S GK
Sbjct: 728 RELNLARDHSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGKRIPFG 786
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 787 FRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 841
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV +CYDGTVRN + +IQF Y
Sbjct: 842 TGYIQRRLVKALEDVQVCYDGTVRNSLGD-LIQFIYG 877
Score = 47.0 bits (110), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQ---LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H + L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKMGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 188/682 (27%), Positives = 301/682 (44%), Gaps = 64/682 (9%)
Query: 115 CEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EV LK+IP+ L + Y D IL LPVPP + DG + S D
Sbjct: 213 AEVHNTLKKIPDSDLALLGLSEAYARPDWMILTVLPVPPPPVRPSIAVDGGAMRSEDDLT 272
Query: 174 AMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDV 226
L +LK + + R + G P + E LQ V Y++ + KS R V
Sbjct: 273 YKLGDILKASMAVRRCEQEGAPAHVITDHEQL-LQFHVATYMDNDIAGIPQALQKSGRPV 331
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
A + K ++R + K FS+R+VITGD ++++GVP IA +T
Sbjct: 332 KAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAMTLT 384
Query: 287 FEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRI 340
+ ERV +NI YLQ LV N D LR K FL+ G +V R +
Sbjct: 385 YPERVTPYNIEYLQTLVRNGPREYPGARYVVRDTGERIDLRYNKKADAFLQYGWIVERHL 444
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR P+ HK S+ + V + T ++N + P +ADFDGD +++ PQS
Sbjct: 445 KDGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEE 504
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL-- 457
+AE+ ++ V +Q++S + + D L + K+ + FLD Q + ++
Sbjct: 505 TRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWHAVQNILLWVPDW 564
Query: 458 -SPLPRPALSKARCSARWTALQILQSVLPPGFDSC------------GDRYLIKKSEVLK 504
+P PA+ K + WT QIL +P G + D LI+ ++L
Sbjct: 565 DGTIPTPAILKPK--PLWTGKQILSLAIPRGINIARSSDPPSSNPLTDDGMLIENGDILY 622
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G D+ T+ + ++ +F EKGPE F LQ ++ LF +GFS+ + D K
Sbjct: 623 GVVDKKTVGAAQGGLIHVVFREKGPEVCRGLFTGLQTVVNYWLFHNGFSIGIGDTIADKG 682
Query: 565 ALWNIQKEI-------------QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL 611
+ +++ I + L T E + ++E + + +
Sbjct: 683 TMAYVKERIGKARANVQQLQDDAHMARLKAKPGMTIRETFEREVERELNQARDDTGQSAQ 742
Query: 612 KS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
KS + + ++ + S + + Q + F+G Q S GK HF +
Sbjct: 743 KSLKDDNNVKQMVTAGSKGSFINISQMSVFVG-QQSVEGKRIPFGFKHRTLPHFTK---- 797
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV
Sbjct: 798 DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 856
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
+CYDGTVRN + +IQF Y
Sbjct: 857 TVCYDGTVRNSLGD-LIQFIYG 877
Score = 43.5 bits (101), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGT 62
Q+ ++FG+ + +EI S++ L +P +G KC++CG
Sbjct: 15 QVKEVQFGILSPEEIKAYSVAKIEFPEVMDETGQRPKQGGLMDPRMGTIDRNFKCQTCGE 74
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H + ++K
Sbjct: 75 GM-AECPGHFGHIELARPVFHVGFLVKVK 102
>gi|302770635|ref|XP_002968736.1| hypothetical protein SELMODRAFT_90820 [Selaginella moellendorffii]
gi|300163241|gb|EFJ29852.1| hypothetical protein SELMODRAFT_90820 [Selaginella moellendorffii]
Length = 510
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 160/548 (29%), Positives = 262/548 (47%), Gaps = 69/548 (12%)
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-DNKLCLT 310
+ K + + + +++TGDAY V EI +P EI++++T ERV N + LQ +V D ++CL
Sbjct: 2 LSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTGFNADKLQAIVNDLQVCLA 61
Query: 311 -----------YSDG-----SSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
Y G + LR S L G VVHR + DGD VF++R P
Sbjct: 62 CLYCFGFDFRKYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPAV 121
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
+KHS+ AL +H + +INPL+C PL DFDGD +H+++PQ+ A+ E EL +++Q
Sbjct: 122 YKHSVIALIARIHPGKSFRINPLVCSPLKGDFDGDRLHVYFPQAEDARVETKELMGLKQQ 181
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKY-FLDKAFTQQLAMFALS-PLPRPALSKARCSA 472
+ +GN + L D L++ ++ ++ F QQLA+ A LP PA+ K A
Sbjct: 182 FQALSSGNPVISLTQDMLVAAYILVSRHIFFTAPQMQQLALHADRWSLPDPAIVKPL--A 239
Query: 473 RWTALQILQSVLPPGFD-SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
WT Q +LP S LI E++ D + + ++ +I + G E
Sbjct: 240 LWTGFQAFGLLLPSELAFSTRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGVAE 299
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELV 591
+ + DS +L E L +GFS+ L DF++S ++ +A+ LL + + +N +
Sbjct: 300 AIGYLDSCCSMLKEFLHIEGFSIGLGDFNVSD-------RQREAISELLAY--AKENYVE 350
Query: 592 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ-LSDRGKFYS 650
+ + R +++ + + + L ++ + S + S LG+Q + R +F
Sbjct: 351 EQDFRDVERCLEVKIKNQTRRGNRLHMMMKAGSKGSASSARIHVACLGVQVVHGRSEFID 410
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
K+ F+ GLDP E HS+ TR +++S +
Sbjct: 411 KS------------------------------FWSGLDPSEFWQHSVCTRATLLKSLT-M 439
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAA 770
+ GTL LM L DV + YDGTVR+ S ++Q Y + + GE VG LAA
Sbjct: 440 HDAGTLASTLMNHLEDVYLAYDGTVRHRQSEQVVQLVYGNESAQP------GEAVGALAA 493
Query: 771 TAMSNPAY 778
+ ++ AY
Sbjct: 494 SFITEQAY 501
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 173/638 (27%), Positives = 293/638 (45%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 264 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 322
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 323 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDE 375
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +TF ERV +NI YLQELV N TY D LR +
Sbjct: 376 VGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPT-TYPGARYVVRDTGERIDLRYNKRAD 434
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 435 AFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFD 494
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 495 GDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDW 554
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
+ Q + ++ +P PA+ K + WT QIL V+P P F
Sbjct: 555 SQVQNILLWVPDWDGSVPTPAVIKPK--PLWTGKQILSMVIPRGINIHRSPDPKSPNPVF 612
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
D D +I+ E++ G ++ T+ + ++ +F EKGPE F +Q ++ LF
Sbjct: 613 D---DGMMIENGEIIFGIVEKKTVGASQGGLIHVVFREKGPEACRTLFGGIQTVVNYWLF 669
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQI 595
+GFS+ + D + + +I+++IQ + + R+ T E + ++
Sbjct: 670 HNGFSIGIGDTIADRPTMDHIKEQIQTRKQNVAQTIDDATHDRLKAAPGMTIRESFESKV 729
Query: 596 ENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
E + + ++ KS + + ++ + S + + Q + +G Q+ + G+
Sbjct: 730 ERELNLARDQSGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVE-GRRIPF 788
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P ++ G ++ + GL P+E H+++ RE ++ ++ +
Sbjct: 789 GFRHRSLPHFTK----DDFSPESR-GFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTA 843
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 844 ETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 880
Score = 47.8 bits (112), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H +L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 185/665 (27%), Positives = 304/665 (45%), Gaps = 85/665 (12%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
+L LPVPP + P IS DG S M S DL+ + + + R+ + G+P +
Sbjct: 245 VLTVLPVPPPAVR-PSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRAEQEGSPQHITD 303
Query: 200 EVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIR 253
E S LQ V Y++ + G KS + S P +A L+ ++R +
Sbjct: 304 EFTSL-LQYHVATYMDNDIAGMPKSIQK-------SGRPLKAIRARLKSKEGRLRGNLMG 355
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------K 306
K FS+R+VITGD ++++G P A+ +TF ERV ++NI+ LQELV N
Sbjct: 356 KRVDFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEHPGA 415
Query: 307 LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
+ DGS G L+ G +V R I+DGD + NR P+ HK S+ V V
Sbjct: 416 KHIIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKV 475
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD +++ PQ +AEV L +V ++S +
Sbjct: 476 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQGHETRAEVANLCAVPHNIVSPQKNGPLMG 535
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQIL 480
+ D + + +M ++ +D + Q + + P +P PA+ K S RWT QI+
Sbjct: 536 IVQDTMAGIWMMTRRDTMMD--YEQVMNILMWVPGWDGVIPTPAILKP--SPRWTGKQII 591
Query: 481 QSVLPPGFD-----SCGD--------RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK 527
LP G + GD LI+ E++ G F + + + +V IF +K
Sbjct: 592 SLGLPLGLNIFRKSEEGDIPLLEKEEPVLIQNGELVWGRFTKKLVGASGGGVVHYIFNDK 651
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ 587
GP+ +EFF++ Q + L GFSV + D + I++++ + ++ +
Sbjct: 652 GPDATVEFFNAAQRICCYWLLHHGFSVGIGDTVPDADLVAKIEEQV------VKYKTQVE 705
Query: 588 NELVDLQIENHIRHVKMLVAK-FILKSST----------------------LGYLIDSKS 624
+ ++QI+N M V + F K+ T +G ++ S S
Sbjct: 706 EYMSEVQIDNMEASPGMTVRETFENKTKTALDNARNGAGDVAYKGMNACNNVGTMVKSGS 765
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ + V Q +G Q S GK + + HF P D +Y A G ++ +
Sbjct: 766 KGSTTNVSQMTAAVG-QQSLEGKRLPFGFKDRVLPHF----PKD-DYSPASRGFVENSYL 819
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H++ RE ++ ++ +E G + + L+ L +++I YDGTVRN + I+
Sbjct: 820 RGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGD-IL 878
Query: 745 QFDYA 749
QF Y
Sbjct: 879 QFTYG 883
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + EI + S+ C I +A L +P LG C +CG S+
Sbjct: 17 IQFGLFSPDEIKSMSV--CHIEYAETMDEQRHRPREKGLNDPKLGTIDRSQMCATCGESQ 74
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL +P++H I+++K
Sbjct: 75 -QECPGHFGHIELAVPVFHVGFITKIK 100
>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
Length = 792
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 175/670 (26%), Positives = 301/670 (44%), Gaps = 69/670 (10%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++LKRI ++ + + F + + I+ LPVPP + DG S DL+ +
Sbjct: 140 QILKRISDDDLESMGLSVEFARPENLIIMVLPVPPPQVRPSIQMDGTSKGEDDLTHKLSD 199
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQD 235
+ + R R G P+ ++E E+ LQ V Y++ + G ++ + S
Sbjct: 200 VLKANAXVARRERDGAPHHVTEEFETL-LQFHVATYMDNDIAGQPQALQK-------SGR 251
Query: 236 PNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +TF E V
Sbjct: 252 PLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPLLIAKNLTFPEIV 311
Query: 292 NVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGD 344
+N+ LQELV N Y D LR +G L+ G V R ++DGD
Sbjct: 312 TPYNVGKLQELVANGPNAHPGARYVYRDNGERIDLRFNRRGGDIPLQYGWRVERHLVDGD 371
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR P+ HK S+ V V HT ++N + P +ADFDGD +++ PQSL +KAE
Sbjct: 372 LVIFNRQPSLHKMSMMGHRVRVMPHHTFRLNLSVTTPYNADFDGDEMNMHVPQSLESKAE 431
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PL 460
+ E+ V +Q++S + + D L + + ++ FL + T + M+ + +
Sbjct: 432 IQEICMVPRQIVSPQKNAPVMGIVQDTLCGVNIFTRRDTFLSRQQTMNILMWVPNWDGRI 491
Query: 461 PRPALSKARCSARWTALQILQSVLPPGFDSCG-----------------DRYLIKKSEVL 503
P PA+ K + WT Q+L ++P G G + LI+ E+L
Sbjct: 492 PAPAILKPK--PLWTGKQMLTLIIPKGVSYTGAHSGNPDGEHPHLTPNDTKVLIENGELL 549
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G + T+ V + ++ I E GPE FF+ +Q + L GFS+ + D +
Sbjct: 550 TGIVCKKTV-GVGSALIQVIMREHGPEVTKYFFNGIQHITNYWLLQHGFSIGIGDAVADR 608
Query: 564 AALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIENHIRHVKMLVAK-- 608
+ I I + +Y R+ T E + ++ + + K
Sbjct: 609 HTMETITNTITNAKTAVNEVIYEAQQDRLDCEPGMTLRETFEYKVNRELNRARENAGKSA 668
Query: 609 --FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ +++ + ++ + S + Q +G Q + GK HF +
Sbjct: 669 QSSLRRNNNVKLMVTAGSKGNYLNICQMTACVG-QQNVEGKRIPFGFQYRTLPHFTK--- 724
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
D + P ++ G + + GL P E H++S RE ++ ++ +E G + + L+ L D
Sbjct: 725 -DDHTPASR-GFVDNSYLRGLTPTEFFFHAMSGREGLIDTAVKTAETGYIQRRLVKALED 782
Query: 727 VVICYDGTVR 736
V++ YDGTVR
Sbjct: 783 VMVKYDGTVR 792
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 160/563 (28%), Positives = 259/563 (46%), Gaps = 78/563 (13%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+G+P IA+ +TF E V +NI+ +Q+LV N
Sbjct: 81 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGIPRSIARNLTFPEIVTPYNIDAMQQLVRN 140
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R ++DGDT+ NR P+ HK S
Sbjct: 141 GPNEHPGAKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQPSLHKMS 200
Query: 359 LQALSVYVHDDHTVKINPLICGPLS----ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
+ V + T ++N +CGP+S ADFDGD +++ PQSL AKAE+ E+ V KQ
Sbjct: 201 MMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDEMNMHVPQSLEAKAEINEICMVPKQ 260
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARC 470
+++ + + + D L ++ M K+ FLDKAF +AM+ LP PA+ K +
Sbjct: 261 IVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMWVPDWDGVLPIPAILKPK- 319
Query: 471 SARWTALQILQSVLPPGFD----------------SCGD-RYLIKKSEVLKGDFDRDTIP 513
WT Q+L ++P G + S GD + +I+ E+L G + T+
Sbjct: 320 -PLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISPGDTKVIIENGELLAGIVCKKTVG 378
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ +V I+ EKGPE +F+ Q L+ LF GFS+ + D + N+ I
Sbjct: 379 ASAGGLVHVIWQEKGPEVCKTWFNGTQRLVNYWLFQYGFSIGIGDTVADTKTMQNVTSAI 438
Query: 574 QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQ 633
Q + + +L +E H +K + I ++ +++ +SA++
Sbjct: 439 Q----------QAKERVAELILEAHQDRMKPMPGMTIRET------FEAQVNSALNTARD 482
Query: 634 QAGFLGLQLSDRGKFYSKTLVEDIASHFERI----------------YPMDLNYPT---- 673
QAG Q + + +V + I P Y T
Sbjct: 483 QAGKSAQQSLNPENNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFKYRTLPCF 542
Query: 674 -------AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L D
Sbjct: 543 TKDDHTPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKALED 602
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN N +IQF Y
Sbjct: 603 VMVKYDGTVRN-SMNEVIQFSYG 624
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 171/631 (27%), Positives = 291/631 (46%), Gaps = 63/631 (9%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K V + R + G P E E LQ V Y++
Sbjct: 170 DGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 228
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD +++E
Sbjct: 229 IPQALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDE 281
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 282 VGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 341
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 342 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 401
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S H + + D L + K + FLD
Sbjct: 402 DEMNMHIPQSEETRAELSQIAWVPRQIISPHANKPVMGIVQDTLCGIRKFTLRDTFLDWN 461
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SCG 492
Q + ++ +P PA+ K + WT QIL V+P G +
Sbjct: 462 QVQNILLWVPDWDGAVPTPAIIKPK--PLWTGKQILSLVIPRGINIHRAPDPKSSNPVFD 519
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D +I+ E++ G ++ T+ + ++ +F EKGPE + F +Q ++ LF +GF
Sbjct: 520 DGMMIENGEIVFGIVEKKTVGASQGGLIHVVFREKGPEATRDLFTGIQMVVNFWLFHNGF 579
Query: 553 SVSLEDFSLSKAALWNIQKEI----QALYSLL---YH-RMS-----TQNELVDLQIENHI 599
S+ + D + I +EI Q + +++ YH R+ T E + ++E +
Sbjct: 580 SIGIGDAIAGPNVMSFITQEINDRKQQVTTIIEDAYHDRLKAMPGMTIRESFESKVEREL 639
Query: 600 RHVKMLVAKF----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
+ ++ + + + + ++ + S + + Q + +G Q S G+
Sbjct: 640 NRARDTSGRYAQENLKEDNNVKQMVVAGSKGSYINISQMSVCVG-QQSVEGRRIPFGFRH 698
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 699 RTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 753
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
+ + L+ L DV++CYDGTVRN + ++QF
Sbjct: 754 IQRRLVKALEDVMVCYDGTVRNSLGD-LLQF 783
>gi|68300844|gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 208/790 (26%), Positives = 342/790 (43%), Gaps = 99/790 (12%)
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL-----CLTYSDGS 315
R+V+ GD + EIG+P A+ + E +++ N + +L D + L +G
Sbjct: 2 RTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNGV 61
Query: 316 -SSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTV-K 373
S+ +G L+ G ++HR ++DGD V INRPP+ H+HSL ALSV + ++V
Sbjct: 62 LVRISVMDG------LQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLS 115
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
INPL+C P DFDGDC+H + PQS+ + E+ EL ++++QLL NG L L+ D+L
Sbjct: 116 INPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLT 175
Query: 434 SLKVMFKK-YFLDKAFTQQLAMFALSPLPRPALSKARCS--ARWTALQILQSVLPPGFDS 490
+ ++ + FLD+ QQL MF L A+ KA WT Q+ +LP +
Sbjct: 176 AAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEY 235
Query: 491 C--GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ I + E++ + + + S+ G + L+ + Q +L E L
Sbjct: 236 VFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNG-GDTLDLLYAAQTVLCEWLS 294
Query: 549 ADGFSVSLEDFSLSK-------------AALWNIQK--EIQAL----------------- 576
G SVSL D +S + L ++ IQ L
Sbjct: 295 MRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESK 354
Query: 577 ---------YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSA 627
S++ + ++ ++ + R ++ LV + ++L ++ + S
Sbjct: 355 NSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGN 414
Query: 628 VSKVVQQAGFLGLQLS------DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY---GL 678
+ K+VQ LGLQ S + S + SH P + Y +
Sbjct: 415 LLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAV 474
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
+K F GL+P E HS++TR+ +S GTL + LM +RD+ + YDGTVRN
Sbjct: 475 VKSSFLAGLNPLECFVHSLTTRDSSFSGHADVS--GTLNRKLMFFMRDLYVGYDGTVRNA 532
Query: 739 CSNSIIQFDY-----------AVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
N I+QF Y A +SH+ G PVG LAA A+S AY A LD S
Sbjct: 533 YGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAACAISEAAYCA-LDQPVS 591
Query: 788 SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 847
+ S L+ + + ++ ++L+ + E A VK L+R+ L +
Sbjct: 592 ALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSE 651
Query: 848 AAVEFLIEYKKPEIISDDEGL--VGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKK 905
+I + PE V H H++K ++ R+ + +L ++ K
Sbjct: 652 VVSTVMICF-SPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAG 710
Query: 906 MKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASD--SYLDKLSGVLANMI 963
N ++ +C + ++S + + V+ + D S LD L V +
Sbjct: 711 ND-----LPNLHITCKDCSVAE--VQKEKSEICITVSVVETSKDPSSLLDTLRDV----V 759
Query: 964 YPVLLETIIK 973
P LLET+IK
Sbjct: 760 IPFLLETVIK 769
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 981 RLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMP 1040
+L ++V+ K +L EHL+L A+S+T G+ V ++ G ++ V PF +A P
Sbjct: 857 KLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNP 916
Query: 1041 RKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFL 1100
F +AA+ +D+L + + +WGK ++GTGS FD+++ + E + ++VY L
Sbjct: 917 GDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQ--INVYTLL 974
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 208/786 (26%), Positives = 348/786 (44%), Gaps = 95/786 (12%)
Query: 55 GKCESCGTSEPGKCEGHFGYIELPIPIYHPSH--ISELKLTMYAFQLQI-------KND- 104
GK + C EP K +G+FG E P H ++ T+ QL++ KN+
Sbjct: 144 GKTD-CAADEPEKDDGNFG--EDPKKPKQAGHGGCGNVQPTIRKEQLKLIGTWKMAKNEE 200
Query: 105 -----GVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVP 158
G+ +R ++ + + + I EE +L Y + +L LPVPP + P
Sbjct: 201 TGDDAGIEKRPITPQMALN-IFRNISEEDLARLGLNVDYARPEWMVLTVLPVPPPAVR-P 258
Query: 159 DIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL 214
IS DG S M S DL+ + + + R + G+P +E + LQ V Y+
Sbjct: 259 SISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQEGSPQHILEEF-TTLLQYHVATYM 317
Query: 215 E------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDA 268
+ R K+ R + A + K+ ++R + K FS+R+VITGD
Sbjct: 318 DNDIAGLPRAQQKTGRPLKAI-------RARLKSKEGRLRGNLMGKRVDFSARTVITGDP 370
Query: 269 YKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLRE 322
++++GVP IA+ +TF ERV +N + L ELV N D S LR
Sbjct: 371 NLDLDQVGVPRSIARVLTFPERVTPYNKHKLTELVRNGPLEHPGAKFIIRDDGSRIDLRY 430
Query: 323 GSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 381
+ G L G +V R ++D D + NR P+ HK S+ V V T ++N + P
Sbjct: 431 HKRAGEINLMVGWIVERHVVDNDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSP 490
Query: 382 LSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK 441
+ADFDGD ++L PQS +AEV L +V ++S + + D + + +M ++
Sbjct: 491 YNADFDGDEMNLHVPQSHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTRR 550
Query: 442 -YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGF------- 488
FLD + Q + + P +P PA+ K RWT QI LP G
Sbjct: 551 DVFLD--YEQVMNILLWVPGWDGVVPPPAIIKPL--PRWTGKQIASLALPAGLNILRPKK 606
Query: 489 ------DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPL 542
+ D +I+ E++ G + + + +V IF ++GP+ +EFF++ Q +
Sbjct: 607 DHMPLREEKDDGLVIQNGEIIWGRMVKGIVGASGGGVVHCIFNDRGPDAAVEFFNAAQRI 666
Query: 543 LMENLFADGFSVSL-----EDFSLS---------KAALWNIQKEIQALYSLLYHRMSTQN 588
+ L +GFSV + +DF + K A+ + E+QA M+ +
Sbjct: 667 VCYWLLHNGFSVGIGDTIPDDFMVGKIEDEIISQKEAVQGFETEVQANELEPAPGMTIRE 726
Query: 589 EL---VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
++N + K + + +G ++ S S + + V Q +G Q S
Sbjct: 727 TFESKTKAALDNARNKSGDVAYKHMNACNNVGIMVKSGSKGSTTNVSQMTAAVG-QQSLE 785
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
GK + HF P D +Y A G ++ + GL P E H++ RE ++
Sbjct: 786 GKRLPFGFKYRVLPHF----PKD-DYSPASRGFVENSYLRGLTPQEFFFHAMGGREGLID 840
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
++ +E G + + L+ L +V+I YD TVRN + I+QF Y + ++F +P+
Sbjct: 841 TAVKTAETGYIQRRLVKALEEVMIKYDSTVRNSLGD-ILQFAYGEDGLD--AMFIEEQPL 897
Query: 766 GVLAAT 771
++AA+
Sbjct: 898 SIIAAS 903
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG +C +CG E
Sbjct: 17 IQFGLFSPEEIKNMSV--CHIEYPETMDEQRNRPREKGLNDPKLGTIDRNSRCGTCG-EE 73
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL IP++H I+++K
Sbjct: 74 QLECPGHFGHIELAIPVFHVGFITKIK 100
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 187/688 (27%), Positives = 305/688 (44%), Gaps = 70/688 (10%)
Query: 113 SCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSD 170
S E +LK+IP+E + Y D IL LPVPP + P IS DG + S D
Sbjct: 208 SAAECHNILKKIPDEDLLIMGLNAEYARPDWMILTVLPVPPAAVR-PSISVDGGAMRSED 266
Query: 171 LSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
L ++LK +R + G P E + LQ V Y++ + KS
Sbjct: 267 DLTYKLGEILKASAQVRKLEAEGVPPSVVNE-HFDLLQFHVATYMDNDIAGIPQALQKSG 325
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGD +++++GVP IA
Sbjct: 326 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAM 378
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGHTF-LRPGQV 335
+T+ ERV +NINYLQ+L++N TY D L+ G L+ G +
Sbjct: 379 TLTYPERVTPYNINYLQQLINNGPA-TYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWI 437
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ + V V + T ++N + P +ADFDGD ++L
Sbjct: 438 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ ++ V +Q++S + + D L + K + F D AF Q L +
Sbjct: 498 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLL 557
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIK 498
+ +P PA+ K R WT Q++ +P G D L+
Sbjct: 558 WLPDWDGTIPPPAILKPR--PMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVD 615
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G + + N ++ IF E G + +FF ++Q ++ L +GFSV + D
Sbjct: 616 NGELVYGTITKSMAGAASNGLIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGD 675
Query: 559 F---SLSKAALWN----IQKEIQALYS------LLYHRMSTQNELVDLQIENHIRHVKML 605
S + AA+ N + +QA S + T E ++ + + +
Sbjct: 676 TIADSATMAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSGELNKARDW 735
Query: 606 VAKF----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
K + + + ++ S + + + Q +G +G Q+ + GK HF
Sbjct: 736 AGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVE-GKRIPFGFRHRTLPHF 794
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 795 SKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 849
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D+ + YDGTVRN IIQF Y
Sbjct: 850 KAMEDLKVGYDGTVRN-SGGDIIQFLYG 876
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 178/706 (25%), Positives = 299/706 (42%), Gaps = 90/706 (12%)
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------V 216
G DL+ +++ + + R + G P E E LQ V Y++
Sbjct: 258 GAQKSEDDLTYKLIEIIKASGNVRRCEQEGAPAHVVNEFEQL-LQFHVATYMDNDIAGIP 316
Query: 217 RGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG 276
+ KS R + A + K ++R + K FS+R+VITGD ++++G
Sbjct: 317 QAMQKSGRPIKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVG 369
Query: 277 VPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGHTF 329
VP IA +TF ERV +NI+YLQ LV N TY D LR + F
Sbjct: 370 VPRSIAMNLTFPERVTPYNIDYLQTLVRNGPT-TYPGARYVVRDTGERIDLRYNKRADAF 428
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDGD
Sbjct: 429 LQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGD 488
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAF 448
+++ PQS +AE+ ++ V +Q+++ + + + D L + K + F+D
Sbjct: 489 EMNMHIPQSEETRAELSQIAWVPRQIVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMDWNQ 548
Query: 449 TQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------------SCGD 493
Q + ++ S +P PA+ K + WT QIL V+P G + D
Sbjct: 549 VQNILLWVPSWDGSVPIPAILKPK--PLWTGKQILSMVIPRGINIARKSEKGGSAPPADD 606
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
I+ +++ G D+ T+ + ++ +F EKGPE F LQ ++ LF +GFS
Sbjct: 607 GMFIENGDIMYGVVDKKTVGASQGGLIHVVFREKGPEATRTLFTGLQQVVNYWLFHNGFS 666
Query: 554 VSLEDFSLSKAALWNIQKEI------------QALYSLLYHRMS-TQNELVDLQIENHIR 600
+ + D + I K I A + LL T E + ++ + +
Sbjct: 667 IGIGDTIAGPDVMAKITKTIDQQKEKVKELTADAYWDLLKPMPGMTIRETFESKVNHELN 726
Query: 601 HVKMLVAK----FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
+ K + + + ++ + S + + Q + +G Q S GK
Sbjct: 727 KARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGKRIPFGFRHR 785
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF + +Y G ++ + GL P E H++S RE ++ ++ +E G +
Sbjct: 786 TLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMSGREGLIDTAVKTAETGYI 840
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA-------RKSHSLFPAGE------ 763
+ L+ L DV++CYDGTVRN + ++QF Y + R+ G+
Sbjct: 841 QRRLVKALEDVMVCYDGTVRNSLGD-LVQFIYGEDGMDGAFIERQGVDTLLMGDREMEKK 899
Query: 764 -------------PVGVLAATAMSNPAYKAVLDSSPSSNNSWELMK 796
P GVL + N + LD N WE ++
Sbjct: 900 YKIDITDYGESRLPAGVLQVGLIDNLNQQEALDLQEKLNQEWEQLR 945
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ + + +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKANSVAKIEFPEINDEGTHRLKTGGVNDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 189/688 (27%), Positives = 307/688 (44%), Gaps = 70/688 (10%)
Query: 113 SCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSD 170
S E +LK+IP+E + Y D IL LPVPP + P IS DG + S D
Sbjct: 208 SAAECHNILKKIPDEDLLIMGLNAEYARPDWMILTVLPVPPAAVR-PSISVDGGAMRSED 266
Query: 171 LSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
L ++LK +R + G P E + LQ V Y++ + KS
Sbjct: 267 DLTYKLGEILKASAQVRKLEAEGVPPSVVNE-HFDLLQFHVATYMDNDIAGIPQALQKSG 325
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGD +++++GVP IA
Sbjct: 326 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAM 378
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGHTF-LRPGQV 335
+T+ ERV +NINYLQ+L++N TY D L+ G L+ G +
Sbjct: 379 TLTYPERVTPYNINYLQQLINNGPA-TYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWI 437
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ + V V + T ++N + P +ADFDGD ++L
Sbjct: 438 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ ++ V +Q++S + + D L + K + F D AF Q L +
Sbjct: 498 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLL 557
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIK 498
+ +P PA+ K R WT Q++ +P G D L+
Sbjct: 558 WLPDWDGTIPPPAILKPR--PMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVD 615
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G + + N ++ IF E G + +FF ++Q ++ L +GFSV + D
Sbjct: 616 NGELVYGTITKSMAGAASNGLIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGD 675
Query: 559 F---SLSKAALWN----IQKEIQALYS------LLYHRMSTQNELVDLQIENHIRHVKML 605
S + AA+ N + +QA S + T E ++ + + +
Sbjct: 676 TIADSATMAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSGELNKARDW 735
Query: 606 VAKFI---LKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
K LK+ + + ++ S + + + Q +G +G Q+ + GK HF
Sbjct: 736 AGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVE-GKRIPFGFRHRTLPHF 794
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 795 SKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 849
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D+ + YDGTVRN IIQF Y
Sbjct: 850 KAMEDLKVGYDGTVRN-SGGDIIQFLYG 876
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 204/780 (26%), Positives = 333/780 (42%), Gaps = 109/780 (13%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL------ 214
DG ++ D L +V+K + +R S G P E E+ LQ + Y+
Sbjct: 273 DGGTSRGEDDLTYKLAEVIKANQAVRKFESEGAPAHVITEFETL-LQWHIATYMDNDLPG 331
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ + KS R V + S K ++R + K FS+R+VITGD ++++
Sbjct: 332 QPQALQKSGRPVKSL-------RSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQ 384
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP+ IA+ +T+ ERV +NI YLQELV N D LR + T
Sbjct: 385 VGVPYSIARNLTYPERVTPYNITYLQELVRNGPTEYPGARYVVRDTGDRIDLRYNKRADT 444
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + + + T ++N + P +ADFDG
Sbjct: 445 FLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDG 504
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS +AE+ ++ V + ++S + + D L + K + F+D+
Sbjct: 505 DEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRD 564
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGD 493
F Q + ++ +P PA+ K + WT QIL +P G + D
Sbjct: 565 FVQNILLWVPGWDGVVPPPAILKPK--PLWTGKQILSMCIPKGINLFRDDENQTSIPVAD 622
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ + I+ E++ G D+ T+ + I+ IF EKGPE F +Q ++ L GF
Sbjct: 623 KGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFREKGPEVTRGLFSGIQMVVNYWLLHHGF 682
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE---------------- 596
S+ + D K + I K I + + +S E LQ E
Sbjct: 683 SIGIGDTVPDKGTMETITKFISEAKLEVANVISMAQE-DKLQPEPGMTIRESFEAKVNRA 741
Query: 597 -NHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ + S + + Q + +G Q S GK
Sbjct: 742 LNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVG-QQSVEGKRIPYGFK 800
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 801 YRTLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 855
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA--------------RKSHSLFP 760
+ + L+ L DV++ YDGTVRN + I+QF Y + R SH F
Sbjct: 856 YIQRRLVKALEDVMVAYDGTVRNSLGD-IVQFVYGEDGVDGGTVEYQNFDSVRLSHEKFE 914
Query: 761 AGEPVGVLAATAMSNPAYKAV-LDSSPSS-----NNSWELMKEILLCRVSFNNDPIDRRV 814
V V + P V LDSS + + WE +KE DR+
Sbjct: 915 RKFRVDVTDPSLTYKPGVLQVGLDSSSLTLQKILDGEWEQLKE-------------DRQS 961
Query: 815 IL-YLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIH 873
+ ++ G GRK +V+N A F I+++KP + E ++ +H
Sbjct: 962 LRHFIFTDGNGRKPLPVNIRRIVQN---------AQQIFHIDFRKPSDLPPQE-IIQMVH 1011
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FG+ + EI S++ I H L++P +G KC++CG +
Sbjct: 19 IQFGIMSPDEIKGFSVA--KIEHPETYEEGGVHPKVGGLSDPRMGTIDRNMKCQTCG-ED 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
C GHF +IEL P+YH ++ +K + +Q G + L++ + +M++R
Sbjct: 76 MSTCPGHFAHIELARPVYHVGFLNRVKKILECVCVQC---GKLKSDLNTDPVLAQMVRRA 132
Query: 125 PEETRK 130
+ R+
Sbjct: 133 RDPKRR 138
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 179/638 (28%), Positives = 283/638 (44%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRS-SRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L VLK +R + G P E E LQ V Y++
Sbjct: 182 DGGTMRSEDDLTFKLGDVLKASASVRKCEQEGAPPHVITEYEQL-LQFHVATYMDNDISG 240
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A S K ++R + K FSSR+VITGD ++E
Sbjct: 241 IPQAMQKSGRPVKA-------IRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNIMLDE 293
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI LQELV N D LR +
Sbjct: 294 VGVPKSIAMTLTYPERVTPYNIAQLQELVRNGPREYPGARYVVRDTGERIDLRYNKRADA 353
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 354 FLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 413
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD +
Sbjct: 414 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWS 473
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC------------G 492
Q + M+ +P PA+ + WT QIL +P G +
Sbjct: 474 AVQNILMWVPDWDGNVPIPAVLAPK--PLWTGKQILSMTIPVGINIVRAPEVSSPNPVED 531
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D LI+ E++ G D+ T+ + +V +F EKGPE F LQ ++ LF +GF
Sbjct: 532 DGMLIENGEIIYGIVDKKTVGAAQGGLVHVVFREKGPEACRGLFSGLQMVVNYWLFHNGF 591
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYH------------------RMSTQNEL-VDL 593
S+ + D + + +I I + +Y R S ++E+ +L
Sbjct: 592 SIGIGDTIADEKTMDHITNRIAMAKAKVYKYIEQGQRDEIKAKPGMTIRESFESEVNAEL 651
Query: 594 QI--ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
I ++ RH + K + + + ++ + S + + Q + +G Q S GK
Sbjct: 652 NICRDDTGRHAE----KSLKNDNNVKQMVVAGSKGSFINISQMSACVG-QQSVEGKRIPF 706
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 707 GFKHRTLPHFAK----DDYSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 761
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L DV +CYDGTVRN + I+QF Y
Sbjct: 762 ETGYIQRRLVKALEDVAVCYDGTVRNSLGD-ILQFIYG 798
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 184/699 (26%), Positives = 316/699 (45%), Gaps = 76/699 (10%)
Query: 104 DGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDIS- 161
D ++ + EV + + I +E +KL G + + + I+ L VPP + P IS
Sbjct: 114 DSQPEKRAITASEVLRIFQLISDEDLQKLGLSGEYARPEWMIITVLGVPPPPVR-PSISV 172
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------E 215
DG + DL+ + + + + R+ G P E ES LQ V Y+ +
Sbjct: 173 DGSARSEDDLTYKLAEIIKANSNVRRTESEGAPAHIVTEFESL-LQFHVATYMDNNIPGQ 231
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ KS R V A + K ++R + K FS+R+VITGD ++E+
Sbjct: 232 PQAIQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEV 284
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +T+ E V +NI+ LQELV N D LR + G
Sbjct: 285 GVPRSIAKTLTYPETVTSYNIHKLQELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGEI 344
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G V R I+DGD + NR P+ HK S+ + V T ++N + P +ADFDG
Sbjct: 345 PLQYGWRVERHIVDGDVIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDG 404
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA 447
D ++L PQS +AE+ E+ V +Q++S + + D L +++ K+ FL +
Sbjct: 405 DEMNLHVPQSEETRAEISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFLAQD 464
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGF-----------DSCGD 493
+ M+ +P PA+ K + W+ QIL V+P G + D
Sbjct: 465 MVMNILMWVPEWDGTVPMPAIIKPK--PLWSGKQILSMVIPRGINITRNDEDQTHNPPDD 522
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
R + I+ E++ G D+ T+ S ++ I EKGPE FF+ +Q ++ +GF
Sbjct: 523 RGMKIENGEIIYGVVDKKTVGSTPGGLIHIIMQEKGPEVCKGFFNGVQLVVNYWFLHNGF 582
Query: 553 SVSLEDFSLSKAALWNIQKE--IQALYSLLYHRMSTQN------------ELVDLQIENH 598
S+ + D +++ A + +I +E +A ++ QN E + Q+
Sbjct: 583 SIGIGD-TIADAHIMDIIQEKITEARAKVIEVTRKAQNNTLEPSPGMTLRETFESQVRQA 641
Query: 599 IRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYS 650
+ + + K + +S+ + ++ + S + + Q + +G Q + + F
Sbjct: 642 LNNARDEAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQAVEGQRIAFGFKF 701
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF R +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 702 RTL-----PHFVRD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 751
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVRN + I+Q Y
Sbjct: 752 AETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQLAYG 789
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 174/635 (27%), Positives = 289/635 (45%), Gaps = 65/635 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 116 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 174
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 175 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDE 227
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +TF ERV +NI YLQELV N TY D LR +
Sbjct: 228 VGVPKSIAMNLTFPERVTPYNIAYLQELVRNGPT-TYPGARYVVRDTGERIDLRYNKRAD 286
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 287 AFLQYGWIVERHLRDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFD 346
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 347 GDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDW 406
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------FDSCG 492
Q + ++ +P P + K + WT QIL +P G F+
Sbjct: 407 NQVQNILLWVPDWDGSVPLPTVIKPK--PLWTGKQILSMCIPRGINIYRSPDPKSFNPVF 464
Query: 493 DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D + I+ E+L G ++ T+ + ++ F EKGPE F LQ ++ LF +G
Sbjct: 465 DDGMNIENGEILFGVVEKKTVGASQGGLIHITFREKGPEVTRALFSGLQQVVNYWLFHNG 524
Query: 552 FSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIENH 598
FS+ + D + + +IQ++I QA+ + R+ T E + ++E
Sbjct: 525 FSIGIGDTIADRGTMAHIQEQIAIRKQNVTQAIDDATHDRLKAAPGMTIRESFESRVERE 584
Query: 599 IRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + ++ K+ + + ++ + S + + Q + +G Q+ + G+
Sbjct: 585 LNLARDQNGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVE-GRRIPYGFR 643
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 644 HRTLPHFTK----DDFGPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 698
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 699 YIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 732
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 187/681 (27%), Positives = 305/681 (44%), Gaps = 56/681 (8%)
Query: 113 SCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S EV +LK+I PE+ Y D IL LPVPP + DG + S D
Sbjct: 218 SPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDD 277
Query: 172 SIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
L +++K ++R + G P E + + LQ V Y++ A RD
Sbjct: 278 LTYKLSQIIKFNGVVRRMEAEGVPPSVVNE-QFDLLQYHVCTYMD-NDIAGLPRDQQKGG 335
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ + K +MR + K FS+R+VITGD +++++GVP IA +T+ ER
Sbjct: 336 RAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPER 395
Query: 291 VNVHNINYLQELVDNKLCLTY-------SDGSSSYSLREGSKGHTF-LRPGQVVHRRIMD 342
V +NI YLQ LV+N TY D L+ G L+ G +V R + D
Sbjct: 396 VTPYNIVYLQTLVNNGPA-TYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKD 454
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + V + + T ++N + P +ADFDGD ++L PQS +
Sbjct: 455 GDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 514
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---S 458
AE+ ++ V +Q++S + + D L + K + FLD Q + ++
Sbjct: 515 AELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWNG 574
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIKKSEVLKG 505
+P PA+ K + WT Q+L +P G D + LI+ E++ G
Sbjct: 575 TIPPPAIFKPK--PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHG 632
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
++ S N +V IF E G +FF ++Q ++ L GFSV + D + KA
Sbjct: 633 TIVKNMAGSANNGLVHVIFRELGHIAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKAT 692
Query: 566 LWNIQKEI----QALYSLLY----HRMS-----TQNELVDLQIENHIRHVKMLVAKFI-- 610
+ I + +A+ L+ +RM T E ++ I + + K
Sbjct: 693 MAGITNRMVEAKEAVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQD 752
Query: 611 -LKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
LK+ + + ++ S + + + Q +G +G Q + GK S HF R
Sbjct: 753 NLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFVE-GKRISFGFRHRSLPHFSRD---- 807
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + D+
Sbjct: 808 -DYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLK 866
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN N ++QF Y
Sbjct: 867 VAYDGTVRNSV-NEVVQFLYG 886
Score = 43.9 bits (102), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESC--G 61
Q+ I+FG+ + +EI S++ + L +P +G KC++C G
Sbjct: 14 QVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEG 73
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELK 91
SE C GHFG+IEL P++H I ++K
Sbjct: 74 MSE---CPGHFGHIELARPVFHQGFIVKVK 100
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 189/688 (27%), Positives = 310/688 (45%), Gaps = 89/688 (12%)
Query: 118 KEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
+++L R+ +E + + P+D +L LPVPP + P IS G S S D
Sbjct: 201 RQVLDRVSDEDARVMGFDALRCHPRD-LVLTVLPVPPPQVR-PAISFG-SLKSDDELTHQ 257
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
+ ++K+ +R + +D+Q+AV R A V A F +
Sbjct: 258 IMSIVKRNNQLRKDKE------------SDVQVAVD-----RSRALLQEHVAAYFNNASM 300
Query: 235 -------DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ K+ E+++ + R K FS+R+VITGD V+E+GVPF
Sbjct: 301 YYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFS 360
Query: 281 IAQRITFEERVNVHNINYLQELV-----DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
IA +TF ERV+ N L E V + + + +G+S+ + L G V
Sbjct: 361 IAMTLTFPERVSAVNKKRLTEFVRRPVYPSAFYIHHPNGTSTKLALRRDRSKVTLNIGDV 420
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +++GD V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L
Sbjct: 421 VERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHV 480
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAM 454
PQSL KAE++E+ V K +S + + + D+LL S ++ K FLDK F Q +A+
Sbjct: 481 PQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVAL 540
Query: 455 FA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEV 502
+ L LP PA+ K R WT Q+ +LP P F +I++ ++
Sbjct: 541 WLDLWQLPVPAVLKPR--PLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQL 598
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + + + ++ IF E+G +EV F + +Q + L GFSV ++D
Sbjct: 599 LCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVAD 658
Query: 563 KAALW-----------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L N++K A + +R + L + + + + + AK
Sbjct: 659 ADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKK 718
Query: 610 IL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
L ++++ +I++ S + Q A F+G Q + F +TL HF
Sbjct: 719 ALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF 773
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
M +Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+
Sbjct: 774 -----MLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLI 828
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV YDGTVRN + +IQF Y
Sbjct: 829 KALEDVHAAYDGTVRN-ANQELIQFMYG 855
>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1662
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 181/658 (27%), Positives = 304/658 (46%), Gaps = 73/658 (11%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D IL LP+PP + P +S G + +L+ ++ V + +++ + SG +
Sbjct: 217 PRD-LILTVLPIPPPQVR-PAVSFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AA 272
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKG 255
+ LQ V + T A+ G ++ S T K ++R + K
Sbjct: 273 VDRSRALLQEHVATFFNNASTFYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKR 328
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VITGD V+E+GVPF +A +TF ERVNV N L + V +TY S
Sbjct: 329 VDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTDFVQR---VTYP--S 383
Query: 316 SSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
++Y +R + L G VV R I+DGD V NR PT H+ S+ V
Sbjct: 384 ANYVIRPNGNVTKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S + +
Sbjct: 444 VLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCM 503
Query: 426 QLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSV 483
+ D+LL S ++ K F+DK F Q +A++ L LP PA+ K R WT QI +
Sbjct: 504 GIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLI 561
Query: 484 LP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
LP P F + +I++ ++L G + + + ++ IF E+G +EV
Sbjct: 562 LPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLIHVIFNERGSDEV 621
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMS 585
+F + +Q + + FSV ++D L + ++ ++ + + +
Sbjct: 622 AKFINGVQRVTTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681
Query: 586 TQNELVDL------QIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQA 635
T+ + L + + + + AK L ++++ +I++ S + + Q A
Sbjct: 682 TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741
Query: 636 GFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
F+G Q + F +TL HF M +Y G+ + GL P+E
Sbjct: 742 VFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHE 791
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 792 FYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLVYG 848
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
Length = 1662
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 180/658 (27%), Positives = 303/658 (46%), Gaps = 73/658 (11%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D IL LP+PP + P ++ G + +L+ ++ V + +++ + SG +
Sbjct: 217 PRD-LILTVLPIPPPQVR-PAVTFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AA 272
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKG 255
+ LQ V + T A+ G ++ S T K ++R + K
Sbjct: 273 VDRSRALLQEHVATFFNNASTYYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKR 328
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VITGD V+E+GVPF +A +TF ERVNV N L E V TY S
Sbjct: 329 VDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRT---TYP--S 383
Query: 316 SSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
++Y +R + L G VV R ++DGD V NR PT H+ S+ V
Sbjct: 384 ANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S + +
Sbjct: 444 VLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCM 503
Query: 426 QLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSV 483
+ D+LL S ++ K F+DK F Q +A++ L LP PA+ K R WT QI +
Sbjct: 504 GIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLI 561
Query: 484 LP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
LP P F + +I++ ++L G + + + ++ IF E+G +EV
Sbjct: 562 LPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMS 585
+F + +Q + + FSV ++D L + ++ ++ + + +
Sbjct: 622 AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681
Query: 586 TQNELVDL------QIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQA 635
T+ + L + + + + AK L ++++ +I++ S + + Q A
Sbjct: 682 TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741
Query: 636 GFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
F+G Q + F +TL HF M +Y G+ + GL P+E
Sbjct: 742 VFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHE 791
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 792 FYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYG 848
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 171/632 (27%), Positives = 279/632 (44%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-R 494
+ LP+PA+ K R RW+ Q++ VLPPG F D
Sbjct: 569 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPPGLNLLRIDKDKSPISEKFSPLADGG 626
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + +V +IF E GPE + FF+ Q ++ L +GFS+
Sbjct: 627 VLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPEVAMSFFNGAQTVVNYWLLHNGFSI 686
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D A + I+ ++ + +T+N L V + N
Sbjct: 687 GIGDTIPDLATIQKIENAVRVRKEEVDTITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 747 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRT 805
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 806 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 860
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 861 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 891
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 174/637 (27%), Positives = 286/637 (44%), Gaps = 69/637 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRS-SRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K +R + G P + E E LQ V Y++
Sbjct: 265 DGGTMRSEDDLTYKLGDIIKASANVRKHEQEGVPAHVTMEYEQL-LQFHVATYMDNDIAG 323
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 324 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLMLDE 376
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 377 VGVPRSIAMTLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 436
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 437 FLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 496
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 497 DEMNMHVPQSEETRAELAQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWN 556
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD 489
Q + ++ +P P + K + WT QIL +P P FD
Sbjct: 557 QVQNILLWVPEWDGTVPIPTIVKPK--PMWTGKQILSMCIPRGINIFRSPDPKSSSPVFD 614
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D +I+ +++ G D+ T+ S ++ +F EKGPE F LQ ++ LF
Sbjct: 615 ---DGMMIENGDIIFGIVDKKTVGSAQGGLIHVVFREKGPEATRGLFSGLQQVVNYWLFH 671
Query: 550 DGFSVSLEDF---SLSKAALWNIQKEIQALYSLL----YH-RMSTQ-----NELVDLQIE 596
+GFS+ + D + A + I + +A S + YH R+ Q E + ++E
Sbjct: 672 NGFSIGIGDTIADDKTTAVISKIIADRKATVSKITQDAYHDRLKPQPGMTIRESFESKVE 731
Query: 597 NHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + K + + + + ++ + S + + Q + +G Q S G+
Sbjct: 732 RELNLARDDSGQYAQKHLKEDNNVKQMVVAGSKGSYINISQMSVCVG-QQSVEGRRIPFG 790
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + D P A+ G ++ + GL P+E H+++ RE ++ ++ +E
Sbjct: 791 FRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAE 845
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV +CYDGTVRN + +IQF Y
Sbjct: 846 TGYIQRRLVKALEDVAVCYDGTVRNSLGD-LIQFVYG 881
Score = 48.1 bits (113), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 13 QIVGIRFGLATQKEICTASISDCSI-------SHASQ---LANPFLGLPLEFGKCESCGT 62
++ ++FG+ + +EI S++ +H + L +P +G KC++CG
Sbjct: 15 RVAEVQFGILSPEEIKAYSVAKIEFPEVMDETTHKPKMGGLMDPRMGTIDRNFKCQTCGE 74
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 75 GM-SECPGHFGHIELARPVFHPGFIVKVK 102
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 187/681 (27%), Positives = 305/681 (44%), Gaps = 56/681 (8%)
Query: 113 SCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S EV +LK+I PE+ Y D IL LPVPP + DG + S D
Sbjct: 218 SPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDD 277
Query: 172 SIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
L +++K ++R + G P E + + LQ V Y++ A RD
Sbjct: 278 LTYKLSQIIKFNGVVRRMEAEGVPPSVVNE-QFDLLQYHVCTYMD-NDIAGLPRDQQKGG 335
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ + K +MR + K FS+R+VITGD +++++GVP IA +T+ ER
Sbjct: 336 RAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPER 395
Query: 291 VNVHNINYLQELVDNKLCLTY-------SDGSSSYSLREGSKGHTF-LRPGQVVHRRIMD 342
V +NI YLQ LV+N TY D L+ G L+ G +V R + D
Sbjct: 396 VTPYNIVYLQTLVNNGPA-TYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKD 454
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + V + + T ++N + P +ADFDGD ++L PQS +
Sbjct: 455 GDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 514
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---S 458
AE+ ++ V +Q++S + + D L + K + FLD Q + ++
Sbjct: 515 AELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDG 574
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIKKSEVLKG 505
+P PA+ K + WT Q+L +P G D + LI+ E++ G
Sbjct: 575 TIPPPAIFKPK--PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHG 632
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
++ S N +V IF E G +FF ++Q ++ L GFSV + D + KA
Sbjct: 633 TIVKNMAGSANNGLVHVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKAT 692
Query: 566 LWNIQKEI----QALYSLLY----HRMS-----TQNELVDLQIENHIRHVKMLVAKFI-- 610
+ I + +A+ L+ +RM T E ++ I + + K
Sbjct: 693 MAGITNRMVEAKEAVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQD 752
Query: 611 -LKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
LK+ + + ++ S + + + Q +G +G Q + GK S HF R
Sbjct: 753 NLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFVE-GKRISFGFRHRSLPHFSRD---- 807
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + D+
Sbjct: 808 -DYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLK 866
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN N ++QF Y
Sbjct: 867 VAYDGTVRNSV-NEVVQFLYG 886
Score = 43.9 bits (102), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESC--G 61
Q+ I+FG+ + +EI S++ + L +P +G KC++C G
Sbjct: 14 QVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEG 73
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELK 91
SE C GHFG+IEL P++H I ++K
Sbjct: 74 MSE---CPGHFGHIELARPVFHQGFIVKVK 100
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 175/637 (27%), Positives = 288/637 (45%), Gaps = 69/637 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 260 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQL-LQFHVATYMDNDIAG 318
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 319 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 371
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKGHT 328
+GVP IA +TF ERV +NI YLQELV N + D LR +
Sbjct: 372 VGVPRSIAMNLTFPERVTPYNITYLQELVRNGPTVYPGARYVVRDTGERIDLRYNKRADA 431
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 432 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDG 491
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FL+ +
Sbjct: 492 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDTFLEWS 551
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD 489
Q + ++ +P PA+ K + WT QIL +P P FD
Sbjct: 552 QVQNILLWVPDWDGSVPTPAIIKPK--PLWTGKQILSMCIPRGINIFRSPDPKSNNPVFD 609
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D +I+ +++ G ++ T+ + +V +F EKGPE F LQ ++ LF
Sbjct: 610 ---DGMMIENGDIVFGIVEKKTVGASQGGLVHVVFREKGPEATRTLFTGLQQVVNYWLFH 666
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI----QALYSLL---YH-RMS-----TQNELVDLQIE 596
+GFS+ + D + IQ +I Q + ++ YH R+ T E + ++E
Sbjct: 667 NGFSIGIGDTIADHKTMTYIQDQIAMRKQEVLKVVDDAYHARLKAAPGMTIRESFEKRVE 726
Query: 597 NHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + ++ K+ + + ++ + S + + Q + +G Q S GK
Sbjct: 727 RELNLARDQSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGKRIPFG 785
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 786 FRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 840
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV +CYDGTVRN + +IQF Y
Sbjct: 841 TGYIQRRLVKALEDVSVCYDGTVRNSLGD-LIQFVYG 876
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H +L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1733
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 159/548 (29%), Positives = 257/548 (46%), Gaps = 52/548 (9%)
Query: 241 KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
K ++R + K FS+R+VITGD V+E+GVPF IA +TF ERVN N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNAINKKRLT 380
Query: 301 ELVDNKLC-----LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
E V + + + +G+++ + L G VV R +++GD V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 416 LSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSAR 473
+S + + + D+LL S ++ K FLDK F Q +A++ L LP PA+ K R
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPR--PL 558
Query: 474 WTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
WT Q+ +LP P F +I++ ++L G + + + ++
Sbjct: 559 WTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHV 618
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALW-----------NIQK 571
IF E+G +EV F + +Q + L GFSV ++D L N++K
Sbjct: 619 IFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEK 678
Query: 572 EIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSSTLGYLIDSKSD 625
A + +R + L + + + + + AK L ++++ +I++ S
Sbjct: 679 IGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSK 738
Query: 626 SAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKG 681
+ Q A F+G Q + F +TL HF M +Y G+
Sbjct: 739 GTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMANR 788
Query: 682 CFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSN 741
+ GL P+E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN +
Sbjct: 789 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQ 847
Query: 742 SIIQFDYA 749
+IQF Y
Sbjct: 848 ELIQFMYG 855
>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
Length = 1662
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 180/658 (27%), Positives = 303/658 (46%), Gaps = 73/658 (11%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D IL LP+PP + P ++ G + +L+ ++ V + +++ + SG +
Sbjct: 217 PRD-LILTVLPIPPPQVR-PAVAFGPAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AA 272
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKG 255
+ LQ V + T A+ G ++ S T K ++R + K
Sbjct: 273 VDRSRALLQEHVATFFNNASTYYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKR 328
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VITGD V+E+GVPF +A +TF ERVNV N L E V TY S
Sbjct: 329 VDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRT---TYP--S 383
Query: 316 SSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
++Y +R + L G VV R ++DGD V NR PT H+ S+ V
Sbjct: 384 ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S + +
Sbjct: 444 VLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCM 503
Query: 426 QLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSV 483
+ D+LL S ++ K F+DK F Q +A++ L LP PA+ K R WT QI +
Sbjct: 504 GIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLI 561
Query: 484 LP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
LP P F + +I++ ++L G + + + ++ IF E+G +EV
Sbjct: 562 LPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMS 585
+F + +Q + + FSV ++D L + ++ ++ + + +
Sbjct: 622 AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681
Query: 586 TQNELVDL------QIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQA 635
T+ + L + + + + AK L ++++ +I++ S + + Q A
Sbjct: 682 TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741
Query: 636 GFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
F+G Q + F +TL HF M +Y G+ + GL P+E
Sbjct: 742 VFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHE 791
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 792 FYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYG 848
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 25 KEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTSEPGKCEGH 71
KE + + C I HA + G P+ G CE+CG P +C GH
Sbjct: 26 KEAQIKAYAKCIIEHAKSYEH---GQPVRGGINDLRMGTTDFEYSCETCGLKHP-ECPGH 81
Query: 72 FGYIELPIPIYH 83
FGY+EL PI++
Sbjct: 82 FGYVELAEPIFN 93
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 174/635 (27%), Positives = 287/635 (45%), Gaps = 65/635 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 265 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 323
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 324 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 376
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +T+ ERV +NI YLQELV N TY D + LR +
Sbjct: 377 VGVPKSIAMTLTYPERVTPYNIEYLQELVRNGPT-TYPGARYVVRDTNERIDLRYNKRAD 435
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
TFL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 436 TFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFD 495
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 496 GDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDW 555
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SC 491
Q + ++ +P PA+ K + W+ QIL +P G +
Sbjct: 556 NQVQNILLWVPDWDGSVPIPAIIKPK--PMWSGKQILSMAIPRGINIHRSPDPKSANPVF 613
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D LI+ E++ G D+ T+ + +V +F EKGPE F LQ ++ LF +G
Sbjct: 614 DDGMLIENGEIIFGIVDKKTVGASQGGLVHVVFREKGPEATRTLFTGLQTVVNYWLFHNG 673
Query: 552 FSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIENH 598
FS+ + D + + I ++I Q + + R+ T E + ++E
Sbjct: 674 FSIGIGDTIADRKTMAYITQQITERKQNVQQIIEDATHDRLKSMPGMTIRESFESKVERE 733
Query: 599 IRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + K+ K+ + + ++ + S + + Q + +G Q S G+
Sbjct: 734 LNLARDDSGKYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQ-SVEGRRIPFGFR 792
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 793 HRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 847
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++ YDGTVRN + +IQF Y
Sbjct: 848 YIQRRLVKALEDVMVNYDGTVRNSLGD-LIQFVYG 881
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQ---LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H + L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKVEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIIKVK 102
>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
Length = 1662
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 180/658 (27%), Positives = 303/658 (46%), Gaps = 73/658 (11%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D IL LP+PP + P ++ G + +L+ ++ V + +++ + SG +
Sbjct: 217 PRD-LILTVLPIPPPQVR-PAVAFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AA 272
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKG 255
+ LQ V + T A+ G ++ S T K ++R + K
Sbjct: 273 VDRSRALLQEHVATFFNNASTYYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKR 328
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VITGD V+E+GVPF +A +TF ERVNV N L E V TY S
Sbjct: 329 VDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRT---TYP--S 383
Query: 316 SSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
++Y +R + L G VV R ++DGD V NR PT H+ S+ V
Sbjct: 384 ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S + +
Sbjct: 444 VLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCM 503
Query: 426 QLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSV 483
+ D+LL S ++ K F+DK F Q +A++ L LP PA+ K R WT QI +
Sbjct: 504 GIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLI 561
Query: 484 LP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
LP P F + +I++ ++L G + + + ++ IF E+G +EV
Sbjct: 562 LPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMS 585
+F + +Q + + FSV ++D L + ++ ++ + + +
Sbjct: 622 AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681
Query: 586 TQNELVDL------QIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQA 635
T+ + L + + + + AK L ++++ +I++ S + + Q A
Sbjct: 682 TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741
Query: 636 GFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
F+G Q + F +TL HF M +Y G+ + GL P+E
Sbjct: 742 VFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHE 791
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 792 FYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYG 848
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 25 KEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTSEPGKCEGH 71
KE + + C I HA + G P+ G CE+CG P +C GH
Sbjct: 26 KEAQIKAYAKCIIEHAKSYEH---GQPVRGGINDLRMGTTDFEYSCETCGLKHP-ECPGH 81
Query: 72 FGYIELPIPIYH 83
FGY+EL PI++
Sbjct: 82 FGYVELAEPIFN 93
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 175/638 (27%), Positives = 284/638 (44%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 258 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVISEFEQL-LQFHVATYMDNDIAG 316
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 317 IPQALQKSGRPVKAL-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 369
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +TF ERV +NI YLQELV N TY D LR +
Sbjct: 370 VGVPKSIAMNLTFPERVTPYNITYLQELVRNGPT-TYPGARYVVRDTGERIDLRYNKRAD 428
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 429 AFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFD 488
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 489 GDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDW 548
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
Q + ++ +P PA+ K + WT QIL +P P F
Sbjct: 549 NHVQNILLWVPDWDGTIPTPAILKPK--PLWTGKQILSMTIPRGINIHRSPDPKSSNPVF 606
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
D D LI+ E++ G D+ T+ + +V +F EKGPE + F LQ ++ LF
Sbjct: 607 D---DGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLF 663
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQI 595
+GFS+ + D + I + I + + + R+ T E + +
Sbjct: 664 HNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIEDATHDRLKPKPGMTIRESFESMV 723
Query: 596 ENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
E + + K + + + + ++ + S + + Q + +G Q S G+
Sbjct: 724 ERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGRRIPF 782
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P ++ G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 783 GFRHRTLPHFTK----DDFTPESR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 837
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 838 ETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 874
Score = 47.4 bits (111), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQ---LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H + L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|329132883|gb|AEB78332.1| RNA polymerase II largest subunit [Parabodo caudatus]
Length = 1035
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 181/666 (27%), Positives = 300/666 (45%), Gaps = 80/666 (12%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D +++ LP+PP + P +S G ++L+ A L +++ E R R N S
Sbjct: 128 PRD-LLIKALPIPPPAVR-PAVSFGSGVSENELT-AKLTSIIRLNE--RLGREIADNSPS 182
Query: 199 QEVESND--LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM-------RT 249
V S LQ + Y T V SQ K+ E++ R
Sbjct: 183 DMVASTRRLLQADLATYFNNASTYYKPAKV------SQTSKMQLKSIYERLKGKQGRLRG 236
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL 309
+ K FS+R+VITGD V+E+GVPF +A +TF ERVN N + L ++V +
Sbjct: 237 NLMGKRVNFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNHLNRHRLTQIVRSS--- 293
Query: 310 TYSDGSSSYS----------LREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
Y ++ S ++ + L G +V R++++GD V NR PT H+ S+
Sbjct: 294 QYPSANAIVSNSGTVWRLNGMKPERRQQLTLEIGDIVERQVLNGDVVLFNRQPTLHRMSM 353
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
V V + +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S +
Sbjct: 354 MGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPN 413
Query: 420 NGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF------ALSPLPRPALSKARCSA 472
+ + D+LL S ++ K+ FLDK F Q + M+ +L+ LP PA+ K R
Sbjct: 414 KSAPCMGIVQDSLLGSWRITDKEVFLDKYFVQNVFMWLSDLIPSLTELPIPAILKPR--P 471
Query: 473 RWTALQILQSV----------LPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
WT Q+ + L F LI+ +VL G D+ I + +
Sbjct: 472 LWTGKQMFSLILRETNITRENLKKSFPHDDAGTLIRNGDVLVGQVDKGLIGASPGSFIHV 531
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
IF ++G + V +F + +Q L L+ FSV ++D + L ++++ I + +
Sbjct: 532 IFNDRGSDAVAQFINGVQRLTTHYLYHFSFSVGVQDTLGDENTLRSVKEMIADARKQVRN 591
Query: 583 RMSTQNE-----------LVDLQIE-----NHIRH-VKMLVAKFILKSSTLGYLIDSKSD 625
R S NE + + E N++R +V + + ++ ++D+ S
Sbjct: 592 RGSAANEKRLTRRAGMTLMGSFEFEVNSILNNVREKASPMVKNGVHRRNSFRVMVDAGSK 651
Query: 626 SAVSKVVQQAGFLGLQ--LSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
+ + Q +G Q R FY + HF M +Y A G + +
Sbjct: 652 GSPLNIYQIVAAVGQQNIFGARIPFYFR---RRTLPHF-----MLDDYGDASKGHVSRGY 703
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL PYE H++ RE ++ ++ +E G + L+ + D+ + YDGTVRN +
Sbjct: 704 VEGLKPYEFFFHTMGGREGLIDTAVKTAETGYFQRKLVKAMEDLHVAYDGTVRN-ADQEV 762
Query: 744 IQFDYA 749
+QF Y
Sbjct: 763 VQFTYG 768
>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 1731
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 188/688 (27%), Positives = 310/688 (45%), Gaps = 89/688 (12%)
Query: 118 KEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
+++L R+ +E + + P+D +L LPVPP + P IS G S S D
Sbjct: 201 RQVLDRVSDEDARVMGFDALRCHPRD-LVLTVLPVPPPQVR-PAISFG-SLKSDDELTHQ 257
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
+ ++K+ +R + +D+Q+AV R A V A F +
Sbjct: 258 IMSIVKRNNQLRKDKE------------SDVQVAVD-----RSRALLQEHVAAYFNNASM 300
Query: 235 -------DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ K+ E+++ + R K FS+R+VITGD V+E+GVPF
Sbjct: 301 YYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFS 360
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLC-----LTYSDGSSSYSLREGSKGHTFLRPGQV 335
IA +TF ERV+ N L E V + + + +G+++ + L G V
Sbjct: 361 IAMTLTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDV 420
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +++GD V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L
Sbjct: 421 VERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHV 480
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAM 454
PQSL KAE++E+ V K +S + + + D+LL S ++ K FLDK F Q +A+
Sbjct: 481 PQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVAL 540
Query: 455 FA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEV 502
+ L LP PA+ K R WT Q+ +LP P F +I++ ++
Sbjct: 541 WLDLWQLPVPAVLKPR--PLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQL 598
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + + + ++ IF E+G +EV F + +Q + L GFSV ++D
Sbjct: 599 LCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVAD 658
Query: 563 KAALW-----------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L N++K A + +R + L + + + + + AK
Sbjct: 659 ADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKK 718
Query: 610 IL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
L ++++ +I++ S + Q A F+G Q + F +TL HF
Sbjct: 719 ALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF 773
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
M +Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+
Sbjct: 774 -----MLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLI 828
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV YDGTVRN + +IQF Y
Sbjct: 829 KALEDVHAAYDGTVRN-ANQELIQFMYG 855
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 196/733 (26%), Positives = 324/733 (44%), Gaps = 89/733 (12%)
Query: 88 SELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGY 143
SELKL + + G R + +V ++LKRI +E + G PQ +
Sbjct: 120 SELKLKADFKRATGEEGGAGGRQTLTVTQVLQVLKRISDEDAYAM---GLDPQYARPEWM 176
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVE 202
I+ +PVPP + D V DL+ L +LK +RS G P ++ E
Sbjct: 177 IMTVMPVPPMAVRPSIQMDAVRQSEDDLTYK-LNDILKANARVRSCEVDGAPMHIIEDFE 235
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
S LQ V ++ E+ G ++ + S P + +A L+ ++R + K
Sbjct: 236 SL-LQFHVVTFMNNEISGLPQALQK-------SGRPIRSIRARLKGKEGRLRGNLMGKRV 287
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LT 310
FS+R+VITGD ++E+GVP IA+ +T+ E V +NI LQELV N
Sbjct: 288 DFSARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEHPGAKYV 347
Query: 311 YSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
D LR +G L G V R IMDGD V NR P+ HK S+ V V
Sbjct: 348 IRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSMMGHRVRVLPY 407
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N + P +ADFDGD +++ PQS ++AE+ E+ V +Q++S + + +
Sbjct: 408 STFRLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISPQANSPVMGIVQ 467
Query: 430 DALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP 485
D L +++ ++ F+ K + M +P PA+ K + WT QI +P
Sbjct: 468 DTLCAIRKFTRRDNFMAKDLVMNILMHIPDWDGTVPTPAIIKPK--PLWTGKQIYSLAIP 525
Query: 486 PG----------------FDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKG 528
G F S GD R +I+ E+L G + T+ + +V + E+G
Sbjct: 526 KGINCLRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVDASEGSLVHVVMAERG 585
Query: 529 PEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL--------- 579
PE +FF++ Q ++ +GFS+ + D + N+ I+ Y
Sbjct: 586 PEVAKKFFNTTQRIVDYWFLQNGFSIGIGDTIADDDTMLNVSNIIKEAYDRVDQIIIDAQ 645
Query: 580 ---------LYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSK 630
+ +R S +N V+ ++ LV + + +S+ + ++ + S +
Sbjct: 646 EDRMEAMPGMTYRESFENR-VNKELNRARDQAGKLVQQRLKESNNVRQMVVAGSKGSYIN 704
Query: 631 VVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
V Q +G Q + GK F +TL HF + +Y A G ++ +
Sbjct: 705 VSQMTAAVG-QQNVEGKRIPFGFRYRTL-----PHFAKD-----DYSPASKGFVENSYLR 753
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ L D+++ YDG+VRN I+Q
Sbjct: 754 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDLMVQYDGSVRNSLG-QIVQ 812
Query: 746 FDYAVNARKSHSL 758
F Y + S L
Sbjct: 813 FTYGEDGMDSTHL 825
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 174/643 (27%), Positives = 283/643 (44%), Gaps = 73/643 (11%)
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------ 214
S G DL+ + + + + R + G+P +E ES LQ V Y+
Sbjct: 269 SSGGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAG 327
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ + KS+R V A G K ++R + K FS+R+VITGD ++E
Sbjct: 328 QPQAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 380
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKG 326
+GVP IAQ +T+ E V +NIN L +LVDN + + S +G G
Sbjct: 381 VGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGG 440
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
FL+ G V R +MDGD + NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 441 RNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS A+AE+ +L V ++S + + D L + K+ + FL
Sbjct: 501 DGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLT 560
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SC 491
K Q + M P LP+PA+ K R RWT Q++ VLP G +
Sbjct: 561 KE--QVMNMMLWVPEWDGVLPQPAILKPR--PRWTGKQMISMVLPSGLNLLRVDRDKVPL 616
Query: 492 GDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
+++ L+ E++ G F + T+ + I+ +I+ E GPE + FF+ Q ++
Sbjct: 617 AEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEYGPEVCMNFFNGAQTVV 676
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL----------- 590
L +GFS+ + D A + I++ ++ + +T+N L
Sbjct: 677 NYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKEEVDSITLSATENTLEPLPGMSVRET 736
Query: 591 ----VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
V + N K + + + S S + + Q +G Q S G
Sbjct: 737 FESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVG-QQSVEG 795
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K HF + +Y G ++ + GL P E H+++ RE ++ +
Sbjct: 796 KRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 851 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYG 892
>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 188/688 (27%), Positives = 310/688 (45%), Gaps = 89/688 (12%)
Query: 118 KEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
+++L R+ +E + + P+D +L LPVPP + P IS G S S D
Sbjct: 201 RQVLDRVSDEDARVMGFDALRCHPRD-LVLTVLPVPPPQVR-PAISFG-SLKSDDELTHQ 257
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
+ ++K+ +R + +D+Q+AV R A V A F +
Sbjct: 258 IMSIVKRNNQLRKDKE------------SDVQVAVD-----RSRALLQEHVAAYFNNASM 300
Query: 235 -------DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ K+ E+++ + R K FS+R+VITGD V+E+GVPF
Sbjct: 301 YYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFS 360
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLC-----LTYSDGSSSYSLREGSKGHTFLRPGQV 335
IA +TF ERV+ N L E V + + + +G+++ + L G V
Sbjct: 361 IAMTLTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDV 420
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +++GD V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L
Sbjct: 421 VERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHV 480
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAM 454
PQSL KAE++E+ V K +S + + + D+LL S ++ K FLDK F Q +A+
Sbjct: 481 PQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVAL 540
Query: 455 FA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEV 502
+ L LP PA+ K R WT Q+ +LP P F +I++ ++
Sbjct: 541 WLDLWQLPVPAVLKPR--PLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQL 598
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + + + ++ IF E+G +EV F + +Q + L GFSV ++D
Sbjct: 599 LCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVAD 658
Query: 563 KAALW-----------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L N++K A + +R + L + + + + + AK
Sbjct: 659 ADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKK 718
Query: 610 IL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
L ++++ +I++ S + Q A F+G Q + F +TL HF
Sbjct: 719 ALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF 773
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
M +Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+
Sbjct: 774 -----MLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLI 828
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV YDGTVRN + +IQF Y
Sbjct: 829 KALEDVHAAYDGTVRN-ANQELIQFMYG 855
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 186/700 (26%), Positives = 317/700 (45%), Gaps = 75/700 (10%)
Query: 99 LQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLS 156
LQIK Q + +++L R+ + + F P+D IL LP+PP +
Sbjct: 175 LQIKVTQEEQDYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRD-LILTVLPIPPPQVR 233
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV 216
P ++ G + +L+ ++ V + +++ + SG + + LQ V +
Sbjct: 234 -PAVAFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AAVDRSRALLQEHVATFFNN 290
Query: 217 RGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
T A+ G ++ S T K ++R + K FS+R+VITGD V+
Sbjct: 291 ASTYYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVD 346
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS--------- 324
E+GVPF +A +TF ERVNV N L E V + S++Y +R
Sbjct: 347 EVGVPFSVAMTLTFPERVNVINRKRLTEFVQRTVY-----PSANYIIRPNGNVTKLALVK 401
Query: 325 -KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
+ L G VV R ++DGD V NR PT H+ S+ V V + +T ++N P +
Sbjct: 402 DRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYN 461
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKY 442
ADFDGD ++L PQSL KAE++E+ V K +S + + + D+LL S ++ K
Sbjct: 462 ADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDT 521
Query: 443 FLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDS 490
F+DK F Q +A++ L LP PA+ K R WT QI +LP P F
Sbjct: 522 FVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLILPEVNHPASPYDKPPFPH 579
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ +I++ ++L G + + + ++ IF E+G +EV +F + +Q + +
Sbjct: 580 NDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCF 639
Query: 551 GFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMSTQNELVDL------QIEN 597
FSV ++D L + ++ ++ + + + T+ + L + +
Sbjct: 640 AFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMSLLQSFEADVNS 699
Query: 598 HIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FY 649
+ + AK L ++++ +I++ S + + Q A F+G Q + F
Sbjct: 700 ALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFR 759
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+TL HF M +Y G+ + GL P+E H+++ RE ++ ++
Sbjct: 760 RRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAVK 809
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 810 TSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYG 848
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 25 KEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTSEPGKCEGH 71
KE + + C I HA + G P+ G CE+CG P +C GH
Sbjct: 26 KEAQIKAYAKCIIEHAKSYEH---GQPVRGGINDLRMGTTDFEYSCETCGLKHP-ECPGH 81
Query: 72 FGYIELPIPIYH 83
FGY+EL PI++
Sbjct: 82 FGYVELAEPIFN 93
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 174/643 (27%), Positives = 283/643 (44%), Gaps = 73/643 (11%)
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------ 214
S G DL+ + + + + R + G+P +E ES LQ V Y+
Sbjct: 269 SSGGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAG 327
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ + KS+R V A G K ++R + K FS+R+VITGD ++E
Sbjct: 328 QPQAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 380
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKG 326
+GVP IAQ +T+ E V +NIN L +LVDN + + S +G G
Sbjct: 381 VGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGG 440
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
FL+ G V R +MDGD + NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 441 RNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS A+AE+ +L V ++S + + D L + K+ + FL
Sbjct: 501 DGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLT 560
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SC 491
K Q + M P LP+PA+ K R RWT Q++ VLP G +
Sbjct: 561 KE--QVMNMMLWVPEWDGVLPQPAILKPR--PRWTGKQMISMVLPSGLNLLRVDRDKVPL 616
Query: 492 GDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
+++ L+ E++ G F + T+ + I+ +I+ E GPE + FF+ Q ++
Sbjct: 617 AEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEYGPEVCMNFFNGAQTVV 676
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL----------- 590
L +GFS+ + D A + I++ ++ + +T+N L
Sbjct: 677 NYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKEEVDSITLSATENTLEPLPGMSVRET 736
Query: 591 ----VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
V + N K + + + S S + + Q +G Q S G
Sbjct: 737 FESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVG-QQSVEG 795
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K HF + +Y G ++ + GL P E H+++ RE ++ +
Sbjct: 796 KRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 851 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYG 892
>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
IL3000]
Length = 1756
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 190/680 (27%), Positives = 312/680 (45%), Gaps = 69/680 (10%)
Query: 116 EVKEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
+V+++L R+ +E + + P+D +L LPVPP + P IS G +L+
Sbjct: 216 KVRQVLDRVSDEDARLMGFDPLRCHPRD-LVLTVLPVPPPQVR-PAISFGGLKSDDELTH 273
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
++ V + ++ + S + + LQ V Y T V+ S
Sbjct: 274 QIMAIVKRNNQLRKDKESDVQ--AAIDRSRALLQEHVATYFNNSSTYYKPTKVND----S 327
Query: 234 QDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ S T K ++R + K FS+R+VITGD V+E+GVPF +A +TF ER
Sbjct: 328 KKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPER 387
Query: 291 VNVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDG 343
VN N L E V ++ + + +G+ + LR+ SK L G +V R +++G
Sbjct: 388 VNTVNKKRLTEFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVING 445
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KA
Sbjct: 446 DVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKA 505
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLP 461
E++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 506 ELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLP 565
Query: 462 RPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRD 510
PA+ K R WT Q+ +LP P F +I++ E+L G +
Sbjct: 566 IPAVLKPR--PLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKG 623
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALW--- 567
+ + ++ IF E+G +EV F + +Q + L GFSV ++D L
Sbjct: 624 IVGAAPGSLIHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMN 683
Query: 568 --------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KS 613
N++K A + +R + L + + + + + AK L ++
Sbjct: 684 EVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRT 743
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDL 669
++ +I++ S + Q A F+G Q + F +TL HF M
Sbjct: 744 NSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLD 793
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 794 DYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHA 853
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YDGTVRN + +IQF Y
Sbjct: 854 AYDGTVRN-ANEELIQFMYG 872
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 187/692 (27%), Positives = 313/692 (45%), Gaps = 75/692 (10%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+RLL++ E +L++IP + + + Y + IL +PVPP + +SD S
Sbjct: 213 KRLLTAA-EAHSILRKIPTSDLRLMGLSERYARPEWMILSVIPVPPPQVRPSIMSD--SL 269
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL------EVRGT 219
S D L +LK +R + G P E+E LQ V Y+ + R
Sbjct: 270 RSEDDLTYKLADILKTSATLRKHDAEGAPAHVVSEIE-QLLQFHVATYMDNEIAGQPRAM 328
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R V A S K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 329 QKSGRPVKAI-------RSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNIALDEVGVPR 381
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTFLRPG 333
IA +T+ ERV +N+ L ELV N D LR +G L+ G
Sbjct: 382 SIAMTLTYPERVTKYNLERLTELVRNGPVEYPGARYIIRDTGERIDLRY-KRGDVSLQIG 440
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
VV R + DGD V NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 441 WVVERHLRDGDYVLFNRQPSLHKMSMMSHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 500
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AE+ E+ V +Q++S + + D L + K+ + FLD Q +
Sbjct: 501 HVPQSEETRAELKEIAWVPRQIVSPQANKPVMGIVQDTLCGIYKMTQRDIFLDWPLVQNI 560
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------SCG-----DRYLIK 498
++ +P P + K + W+ QI+ V+P G + S G D +I+
Sbjct: 561 LLWVPDWDGTIPHPCIIKPK--PMWSGKQIIALVIPQGINLANGNLSIGNPINDDALIIE 618
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G F++ + S ++ +F E+GPE + +Q ++ LF +GFS+ + D
Sbjct: 619 NGEIMMGIFNKGIVGSSAGGLIHVVFRERGPEVTRDMIGGIQTVVNYWLFHNGFSIGIGD 678
Query: 559 FSLSKAALWNIQKEI------------QALYSLLYHRMS-TQNELVDLQIE---NHIRHV 602
K +I I +A+ LL R T E + + N +R
Sbjct: 679 TVPDKPTEKSIMTNIETAKEDVRKVVEEAVKGLLKPRPGMTIRESFEASVNGILNQVRDK 738
Query: 603 KMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDI 657
A+ LK + + ++ + S + + Q + +G Q + + F +TL
Sbjct: 739 SGKSAQQSLKRDNNVKTMVTAGSKGSFINISQMSAMVGQQNVEGQRIPFGFKHRTL---- 794
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + D P ++ G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 795 -PHFTK----DDFSPESR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 848
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ + DV++ YDGT+RN + ++Q+ Y
Sbjct: 849 RRLVKAMEDVMVAYDGTIRNSLGD-VLQWTYG 879
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ S L +P +G KC++CG PG
Sbjct: 21 VQFGIMSPEEIKAYSVAKIEHSEVMDESGYRPRVGGLMDPRMGTIDRNYKCQTCGEG-PG 79
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YH + ++K
Sbjct: 80 DCPGHFGHIELARPVYHAGFLVKVK 104
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 174/643 (27%), Positives = 283/643 (44%), Gaps = 73/643 (11%)
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------ 214
S G DL+ + + + + R + G+P +E ES LQ V Y+
Sbjct: 269 SSGGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAG 327
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ + KS+R V A G K ++R + K FS+R+VITGD ++E
Sbjct: 328 QPQAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 380
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKG 326
+GVP IAQ +T+ E V +NIN L +LVDN + + S +G G
Sbjct: 381 VGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGG 440
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
FL+ G V R +MDGD + NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 441 RNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS A+AE+ +L V ++S + + D L + K+ + FL
Sbjct: 501 DGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLT 560
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SC 491
K Q + M P LP+PA+ K R RWT Q++ VLP G +
Sbjct: 561 KE--QVMNMMLWVPEWDGVLPQPAILKPR--PRWTGKQMISMVLPSGLNLLRVDRDKVPL 616
Query: 492 GDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
+++ L+ E++ G F + T+ + I+ +I+ E GPE + FF+ Q ++
Sbjct: 617 AEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEYGPEVCMNFFNGAQTVV 676
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL----------- 590
L +GFS+ + D A + I++ ++ + +T+N L
Sbjct: 677 NYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKEEVDSITLSATENTLEPLPGMSVRET 736
Query: 591 ----VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
V + N K + + + S S + + Q +G Q S G
Sbjct: 737 FESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVG-QQSVEG 795
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K HF + +Y G ++ + GL P E H+++ RE ++ +
Sbjct: 796 KRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDT 850
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 851 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYG 892
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 175/638 (27%), Positives = 284/638 (44%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 258 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVISEFEQL-LQFHVATYMDNDIAG 316
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 317 IPQALQKSGRPVKAL-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 369
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +TF ERV +NI YLQELV N TY D LR +
Sbjct: 370 VGVPKSIAMNLTFPERVTPYNITYLQELVRNGPT-TYPGARYVVRDTGERIDLRYNKRAD 428
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 429 AFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFD 488
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 489 GDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDW 548
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
Q + ++ +P PA+ K + WT QIL +P P F
Sbjct: 549 NHVQNILLWVPDWDGTIPTPAILKPK--PLWTGKQILSMTIPRGINIHRSPDPKSSNPVF 606
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
D D LI+ E++ G D+ T+ + +V +F EKGPE + F LQ ++ LF
Sbjct: 607 D---DGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLF 663
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQI 595
+GFS+ + D + I + I + + + R+ T E + +
Sbjct: 664 HNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIEDATHDRLKPKPGMTIRESFESMV 723
Query: 596 ENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
E + + K + + + + ++ + S + + Q + +G Q S G+
Sbjct: 724 ERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGRRIPF 782
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P ++ G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 783 GFRHRTLPHFTK----DDFTPESR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 837
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 838 ETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 874
Score = 47.4 bits (111), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQ---LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H + L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|133329|sp|P17545.1|RPB1B_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-B;
Short=RNA polymerase II subunit B1-B; AltName:
Full=DNA-directed RNA polymerase II largest subunit B
gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 310/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 216 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 271
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 272 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKK 329
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 330 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 388
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 389 NTINKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 446
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 447 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 506
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 507 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 566
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 567 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 624
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 625 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 684
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 744
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 745 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 794
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 795 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 854
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 855 YDGTVRN-ANDELIQFMYG 872
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 182/660 (27%), Positives = 300/660 (45%), Gaps = 74/660 (11%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
IL LPVPP + P IS DG S M S DL+ + + + R+ + G+P ++
Sbjct: 245 ILTVLPVPPPAVR-PSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRAEQEGSPAHITE 303
Query: 200 EVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIR 253
E + LQ V Y++ + G KS + S P +A L+ ++R +
Sbjct: 304 EF-TQLLQYHVATYMDNDIAGLPKSIQK-------SGRPLKAIRARLKSKEGRLRGNLMG 355
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC----- 308
K FS+R+VITGD ++++GVP A+ +TF ERV +NI+ L ELV N
Sbjct: 356 KRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNIHKLSELVRNGPSEHPGA 415
Query: 309 --LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
+ DGS G L+ G +V R I+DGD + NR P+ HK S+ V V
Sbjct: 416 KHIIREDGSRIDLRYHKRAGEIQLQNGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKV 475
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQS ++EV L +V ++S +
Sbjct: 476 MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRSEVANLCAVPHNIVSPQKNGPLMG 535
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQIL 480
+ D + + +M K+ +D + Q + + P +P+PA+ K RWT QI+
Sbjct: 536 IVQDTMAGIYMMTKRDTMMD--YEQVMNIMLWVPGWDGIVPQPAILKP--VPRWTGKQIM 591
Query: 481 QSVLPPGFD--SCGD------------RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFE 526
LP G + GD L++ E++ G + + + IV IF +
Sbjct: 592 SMGLPSGLNIMKLGDDEDHISLAEADSSVLVQNGELVWGRLTKKLVGASGGGIVHLIFND 651
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSV----SLEDFSLSKAALWNIQKEIQALYSLLYH 582
+G + +EFF++ Q ++ L +GFSV ++ D + A NI KE + +
Sbjct: 652 RGTDATVEFFNAAQRIVCYWLLHNGFSVGIGDTIPDADMVLAIEQNIVKEKATVDGYMRE 711
Query: 583 RMSTQNELV-------------DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
S + E + ++N + K + + +G ++ S + +
Sbjct: 712 VQSDEMEALPGMTIRETFESQTKAALDNARNNAGDAAYKGMKPCNNVGVMVKGGSKGSTT 771
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
V Q +G Q S GK + + HF P D +Y A G ++ + GL P
Sbjct: 772 NVSQMTAAVG-QQSLEGKRLPFGFKDRVLPHF----PKD-DYSPASRGFVENSYLRGLTP 825
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ L +++I YDGTVRN + I+QF Y
Sbjct: 826 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGD-ILQFVYG 884
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG C +CG S+
Sbjct: 17 IQFGLFSPEEIKNMSV--CHIEYPETMDEQRNRPRERGLNDPKLGTIDRSQMCATCGESQ 74
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL +P+YH +I+++K
Sbjct: 75 -QECPGHFGHIELAVPVYHVGYITKIK 100
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 277/639 (43%), Gaps = 83/639 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 284 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 342
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 343 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 395
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + +G G FL+ G
Sbjct: 396 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWR 455
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 456 VERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 515
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 516 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILL 575
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------------SCGDR 494
+ +P+PA+ K R RWT Q++ VLPPG +
Sbjct: 576 WVPDWDGVIPQPAILKPR--PRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGG 633
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + I+ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 634 VLVHGGELMYGMFSKKTVGATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSI 693
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
+ D + I+ ++ R +E+ +N + + + + +S
Sbjct: 694 GIGDTIPDLPTIQKIENAVRV-------RKEEVDEITASATDNTLEPLPGMNVRETFESK 746
Query: 615 TLGYLIDSK------------------------SDSAVSKVVQQAGFLGLQLSDRGKFYS 650
L +++ S ++ + Q +G Q S GK
Sbjct: 747 VSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIP 805
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 806 FGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 860
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 861 AETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 898
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
Length = 1765
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 310/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 215 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 271 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTHYKPTKVNDTKK 328
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 329 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 387
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 388 NTINKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 445
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 446 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 505
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 506 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 565
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 566 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 623
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 624 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 683
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 743
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 744 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 793
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 794 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 853
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 854 YDGTVRN-ANDELIQFMYG 871
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 181/674 (26%), Positives = 290/674 (43%), Gaps = 77/674 (11%)
Query: 134 GKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSS 189
G G PQ + I+ LPVPP + DGV+T DL+ + VL ++
Sbjct: 148 GMGLNPQWARPEWMIISVLPVPPMAVRPAVSMDGVATNQDDLTHKLRDIVLTNQQLRTHE 207
Query: 190 RSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE---- 245
G P E E N LQ V Y++ + A S P + +A L+
Sbjct: 208 TDGAPAHIITEFE-NLLQYHVATYMD-----NDIAGIPAALQKSGRPLKSIRARLKGKEG 261
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD + ++++GVP IA+ +TF E V +NI+ +Q++V N
Sbjct: 262 RLRGNLMGKRVDFSARTVITGDPHLSIDQVGVPRSIARNLTFPETVTPYNIHKMQQMVQN 321
Query: 306 KLC------LTYSDGSSSYSLREGSKG-HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR +G L+PG V R +MD D V NR P+ HK S
Sbjct: 322 GPTEHPGAKYVIKDDGQRIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNRQPSLHKMS 381
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS KAE++EL V KQ++S
Sbjct: 382 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSP 441
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L ++ K+ FL + L M+ +P+PA+ K W
Sbjct: 442 QKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLLMWVPDWDGTIPQPAIIKP--VPLW 499
Query: 475 TALQILQSVLPPGFDSCGD------------------RYLIKKSEVLKGDFDRDTIPSVI 516
T QI+ +LP + G + LI+ E+L G D+ + S
Sbjct: 500 TGKQIVSLILPAKINVTGMHTAYVQTPSNPEPDIPDCKVLIENGELLSGILDKSMVGSSS 559
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL 576
++ E GP+ FF+ Q ++ L GFS+ + D K I I
Sbjct: 560 GGVIHVAMNEYGPDVAKAFFNGCQTVVNYWLLQHGFSIGIGDTIADKETTQQINDAIAKS 619
Query: 577 YS-----LLYHRMSTQNELVDLQIE-----------NHIRHVKMLVAKFILKS-STLGYL 619
+ + + T + L + N R A+ LK + + +
Sbjct: 620 KAKCSEIIKAAQNGTLEGMPGLSVRETFESYITKELNTARDGAGKSAQMTLKEFNNVKQM 679
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAK 675
+ + S + V Q + +G Q + + F ++L HF + D + P A+
Sbjct: 680 VVAGSKGSYINVAQMSACVGQQNVEGSRIPFGFKYRSL-----PHFTK----DDHTPEAR 730
Query: 676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTV 735
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L D++ YDGTV
Sbjct: 731 -GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLMAQYDGTV 789
Query: 736 RNVCSNSIIQFDYA 749
RN I+QF Y
Sbjct: 790 RNALG-EIVQFCYG 802
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 195/731 (26%), Positives = 319/731 (43%), Gaps = 70/731 (9%)
Query: 113 SCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S EV +LK+I PE+ Y D IL LPVPP + DG + S D
Sbjct: 218 SPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDD 277
Query: 172 SIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
L +++K ++R + G P E + + LQ V Y++ A RD
Sbjct: 278 LTYKLSQIIKFNGVVRRMEAEGVPPSVVNE-QFDLLQYHVCTYMD-NDIAGLPRDQQKGG 335
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ + K +MR + K FS+R+VITGD +++++GVP IA +T+ ER
Sbjct: 336 RAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPER 395
Query: 291 VNVHNINYLQELVDNKLCLTY-------SDGSSSYSLREGSKGHTF-LRPGQVVHRRIMD 342
V +NI YLQ LV+N TY D L+ G L+ G +V R + D
Sbjct: 396 VTPYNIVYLQTLVNNGPA-TYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKD 454
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + V + + T ++N + P +ADFDGD ++L PQS +
Sbjct: 455 GDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 514
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---S 458
AE+ ++ V +Q++S + + D L + K + FLD Q + ++
Sbjct: 515 AELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDG 574
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIKKSEVLKG 505
+P PA+ K + WT Q+L +P G D + LI+ E++ G
Sbjct: 575 SIPPPAIFKPK--PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHG 632
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
++ S N +V IF E G +FF ++Q ++ L GFSV + D + KA
Sbjct: 633 TIVKNMAGSANNGLVHVIFRELGHVAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKAT 692
Query: 566 LWNIQKEI----QALYSLLY----HRMS-----TQNELVDLQIENHIRHVKMLVAKFI-- 610
+ I + +A+ L+ +RM T E ++ I + + K
Sbjct: 693 MAGITNRMVEAKEAVQKLVQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQD 752
Query: 611 -LKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
LK+ + + ++ S + + + Q +G +G Q + GK + HF +
Sbjct: 753 NLKADNNVKQMVVSGAKGSFINISQMSGVVGQQFVE-GKRIAFGFRHRSLPHFSKD---- 807
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + D+
Sbjct: 808 -DYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLK 866
Query: 729 ICYDGTVRNVCSNSIIQFDYAVNA--------------RKSHSLFPAGEPVGVLAATAMS 774
+ YDGTVRN N ++QF Y + R S F + VL A S
Sbjct: 867 VAYDGTVRNSV-NEVVQFLYGEDGMDGAAMEKQSLDIIRLSDRAFERRYKIDVLGANGFS 925
Query: 775 NPAYKAVLDSS 785
+A +D S
Sbjct: 926 KGVLQAGIDQS 936
Score = 44.3 bits (103), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESC--G 61
Q+ I+FG+ + +EI S++ + L +P +G KC++C G
Sbjct: 14 QVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEG 73
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELK 91
SE C GHFG+IEL P++H I ++K
Sbjct: 74 MSE---CPGHFGHIELARPVFHQGFIVKVK 100
>gi|261330838|emb|CBH13823.1| RNA polymerase IIA largest subunit, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 948
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 189/682 (27%), Positives = 312/682 (45%), Gaps = 73/682 (10%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 215 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 271 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVND--- 325
Query: 232 VSQDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
++ S T K ++R + K FS+R+VITGD V+E+GVPF +A +TF
Sbjct: 326 -TKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFP 384
Query: 289 ERVNVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIM 341
ERVN N L E + + + +G+ + LR+ SK L G VV R ++
Sbjct: 385 ERVNTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVI 442
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
+GD V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL
Sbjct: 443 NGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLT 502
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSP 459
KAE++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L
Sbjct: 503 KAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQ 562
Query: 460 LPRPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFD 508
LP PA+ K R WT Q+ +LP P F +I++ ++L G
Sbjct: 563 LPIPAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPIT 620
Query: 509 RDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL-- 566
+ + + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 621 KSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQ 680
Query: 567 ---------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL---- 611
N++K A + +R + L + + + + + AK L
Sbjct: 681 MNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR 740
Query: 612 KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPM 667
++++ +I++ S + Q A F+G Q + F +TL HF M
Sbjct: 741 RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----M 790
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 791 LDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDV 850
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 851 HAAYDGTVRN-ANDELIQFMYG 871
>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 310/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 215 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 271 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKK 328
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 329 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 387
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 388 NTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 445
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 446 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 505
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 506 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 565
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 566 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 623
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 624 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 683
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 743
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 744 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 793
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 794 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 853
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 854 YDGTVRN-ANDELIQFMYG 871
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 169/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 389
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + +G G FL+ G
Sbjct: 390 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWR 449
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 450 VERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 509
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 510 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILL 569
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------------SCGDR 494
+ +P+PA+ K R RWT Q++ VLPPG +
Sbjct: 570 WVPDWDGVIPQPAILKPR--PRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGG 627
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + I+ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 628 VLVHGGELMYGMFSKKTVGATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSI 687
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
+ D + I+ ++ + +T N L L N + V++ +
Sbjct: 688 GIGDTIPDLPTIQKIENAVRVRKEEVDDITASATDNTLEPLPGMNVRETFESKVSRALNN 747
Query: 613 S---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ + + S S ++ + Q +G Q S GK
Sbjct: 748 ARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIPFGFKYRT 806
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 807 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 861
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 862 RKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 892
>gi|407852687|gb|EKG06051.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
cruzi]
Length = 1588
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 187/688 (27%), Positives = 310/688 (45%), Gaps = 89/688 (12%)
Query: 118 KEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
+++L R+ +E + + P+D +L LPVPP + P IS G S S D
Sbjct: 56 RQVLDRVSDEDARVMGFDALRCHPRD-LVLTVLPVPPPQVR-PTISFG-SLKSDDELTHQ 112
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
+ ++K+ +R + +D+Q+AV R A V A F +
Sbjct: 113 IMSIVKRNNQLRKDKE------------SDVQVAVD-----RSRALLQEHVAAYFNNASM 155
Query: 235 -------DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ K+ E+++ + R K FS+R+VITGD V+E+GVPF
Sbjct: 156 YYKPTMVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFS 215
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLC-----LTYSDGSSSYSLREGSKGHTFLRPGQV 335
IA +TF ERV+ N L E V + + + +G+++ + L G V
Sbjct: 216 IAMTLTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDV 275
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +++GD V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L
Sbjct: 276 VERHLINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHV 335
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAM 454
PQSL KAE++E+ V K +S + + + D+LL S ++ K FLDK F Q +A+
Sbjct: 336 PQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVAL 395
Query: 455 FA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEV 502
+ L LP PA+ + R WT Q+ +LP P F +I++ ++
Sbjct: 396 WLDLWQLPVPAVLRPR--PLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQL 453
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + + + ++ IF E+G +EV F + +Q + L GFSV ++D
Sbjct: 454 LCGPITKSIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFYLINFGFSVGVQDTVAD 513
Query: 563 KAALW-----------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L N++K A + +R + L + + + + + AK
Sbjct: 514 ADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKK 573
Query: 610 IL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
L ++++ +I++ S + Q A F+G Q + F +TL HF
Sbjct: 574 ALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF 628
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
M +Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+
Sbjct: 629 -----MLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLI 683
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV YDGTVRN + +IQF Y
Sbjct: 684 KALEDVHAAYDGTVRN-ANQELIQFMYG 710
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 169/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 389
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + +G G FL+ G
Sbjct: 390 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWR 449
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 450 VERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 509
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 510 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILL 569
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------------SCGDR 494
+ +P+PA+ K R RWT Q++ VLPPG +
Sbjct: 570 WVPDWDGVIPQPAILKPR--PRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGG 627
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + I+ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 628 VLVHGGELMYGMFSKKTVGATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSI 687
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
+ D + I+ ++ + +T N L L N + V++ +
Sbjct: 688 GIGDTIPDLPTIQKIENAVRVRKEEVDDITASATDNTLEPLPGMNVRETFESKVSRALNN 747
Query: 613 S---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ + + S S ++ + Q +G Q S GK
Sbjct: 748 ARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIPFGFKYRT 806
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 807 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 861
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 862 RKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 892
>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 310/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 215 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 271 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKK 328
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 329 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 387
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 388 NTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 445
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 446 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 505
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 506 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 565
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 566 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 623
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 624 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 683
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 743
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 744 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 793
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 794 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 853
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 854 YDGTVRN-ANDELIQFMYG 871
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1765
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 310/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 215 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 271 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKK 328
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 329 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 387
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 388 NTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 445
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 446 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 505
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 506 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 565
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 566 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 623
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 624 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 683
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 743
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 744 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 793
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 794 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 853
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 854 YDGTVRN-ANDELIQFMYG 871
>gi|133332|sp|P17546.1|RPB1A_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-A;
Short=RNA polymerase II subunit B1-A; AltName:
Full=DNA-directed RNA polymerase II largest subunit A
gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 309/679 (45%), Gaps = 67/679 (9%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+++L R+ ++ + + G+ PQ + +L LPVPP + P IS G +L
Sbjct: 216 KVRQVLDRVSDDDARLM---GFDPQRCHPRDLVLTVLPVPPPQVR-PAISFGGLRSDDEL 271
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ ++ V + ++ R S + + LQ V Y T V+
Sbjct: 272 THQIMSIVKRNNQLRRDKESDVQ--AAIDRSRALLQEHVATYFNNASTYYKPTKVNDTKK 329
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ + K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERV
Sbjct: 330 L-KSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 388
Query: 292 NVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGD 344
N N L E + + + +G+ + LR+ SK L G VV R +++GD
Sbjct: 389 NTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGD 446
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT H+ S+ V V + T ++N P +ADFDGD ++L PQSL KAE
Sbjct: 447 VVLFNRQPTLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 506
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
++E+ V K +S + + + D+LL S ++ K FLDK F Q +A++ L LP
Sbjct: 507 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 566
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ ++L G +
Sbjct: 567 PAILKPR--PLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSI 624
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL----- 566
+ + ++ IF E G +EV F + +Q + L GFSV ++D L
Sbjct: 625 VGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMND 684
Query: 567 ------WNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 744
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 745 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 794
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 795 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 854
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++ +IQF Y
Sbjct: 855 YDGTVRN-ANDELIQFMYG 872
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 171/639 (26%), Positives = 288/639 (45%), Gaps = 70/639 (10%)
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+ GV DL+ + + + R + G P E E LQ V Y++
Sbjct: 261 VDGGVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIA 319
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
+ KS R V A + K ++R + K FS+R+VITGD +++
Sbjct: 320 GIPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLD 372
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKG 326
E+GVP IA +T+ ERV +NI YLQELV N TY D LR +
Sbjct: 373 EVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPT-TYPGARYVVRDTGERIDLRYNKRA 431
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADF
Sbjct: 432 DAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADF 491
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD +++ PQS +AE+ ++ V +Q++S + + D L + K + F++
Sbjct: 492 DGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFME 551
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PG 487
Q + ++ +P PA+ K + WT QIL V+P P
Sbjct: 552 WNQVQNILLWVPDWDGNVPPPAIFKPK--PLWTGKQILSMVIPRGINIQRAAEPKSSNPV 609
Query: 488 FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
FD D LI+ E++ G ++ T+ + ++ +F EKGPE + F +Q ++ L
Sbjct: 610 FD---DGILIENGEIIYGIVEKKTVGASQGGLIHVVFREKGPEATRDLFTGIQVVVNYWL 666
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLL-------YH-RMS-----TQNELVDLQ 594
F +GFS+ + D + +I IQ L+ YH R+ T E + +
Sbjct: 667 FHNGFSIGIGDTVAGPKVMTHITNVIQGKKKLVSEIVEDAYHDRLKALPGMTIRESFESK 726
Query: 595 IENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS 650
+E + + ++ K+ + + ++ + S + + Q + +G Q S GK
Sbjct: 727 VERELNRARDESGQYAQKNLSDDNNVKQMVVAGSKGSYINISQMSVCVG-QQSVEGKRIP 785
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + D P ++ G ++ + GL P E H+++ RE ++ ++
Sbjct: 786 FGFRHRTLPHFTK----DDFSPESR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 840
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVRN + ++QF Y
Sbjct: 841 AETGYIQRRLVKALEDVMVHYDGTVRNSLGD-LLQFVYG 878
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H +L +P +G KC++CG
Sbjct: 19 VQFGVLSPEEIKAYSVAKIEHPEVMDEATHRPKLGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I+++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFINKVK 102
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 279/639 (43%), Gaps = 83/639 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 389
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + +G G FL+ G
Sbjct: 390 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRNTGERIDLRHHKGGGGRNFLQYGWR 449
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 450 VERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 509
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 510 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILL 569
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-R 494
+ +P+PA+ K R RWT Q++ VLPPG F D
Sbjct: 570 WVPDWDGVIPQPAILKPR--PRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGG 627
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + ++ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 628 LLVHSGELMYGMFSKKTVGATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSI 687
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
+ D A + I++ ++ R +E+ +N + + + + +S
Sbjct: 688 GIGDTIPDLATIEKIEEAVRV-------RKEEVDEITASATDNTLEPLPGMNVRETFESK 740
Query: 615 TLGYLIDSK------------------------SDSAVSKVVQQAGFLGLQLSDRGKFYS 650
L +++ S ++ + Q +G Q S GK
Sbjct: 741 VSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIP 799
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 800 FGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 854
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 855 AETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 892
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 187/727 (25%), Positives = 314/727 (43%), Gaps = 80/727 (11%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDG 163
G +R L + EV + + IP ++ + Y D I+ LPVPP + P + G
Sbjct: 119 GEPERRLLTPMEVHSVFRHIPSVDLVRMGLSENYARPDWMIITVLPVPPPTVR-PSVEQG 177
Query: 164 VSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE-------- 215
DL+ + + + + G P +E E + LQ V Y++
Sbjct: 178 GMKSHDDLTYKLADIIKANANVKKGEVEGAPAHVIKEFE-DLLQYHVATYMDNDIAGQPK 236
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ + ++ + + AR K ++R + K FS+R+VITGD ++E
Sbjct: 237 ALQKSGRAIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 286
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLR-EGSK 325
+GVP IA+ +T+ ERV NI+ LQ+LV N K L D LR +
Sbjct: 287 VGVPRSIARTLTYPERVTPFNIHKLQQLVRNGPDEHPGAKYIL--RDTGERIDLRYNKNA 344
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
G T L+ G V R + +GD V NR P+ HK S+ V V T ++N + P +AD
Sbjct: 345 GDTPLQYGWTVERHLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNAD 404
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQS +AE+ E+ V +Q+L+ + + DAL + K + F+
Sbjct: 405 FDGDEMNLHVPQSEETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFM 464
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP-----------GFDS 490
K+ + M+ +P PA+ K + WT QIL V+P G D+
Sbjct: 465 AKSHVMNILMWVPGWNGIVPPPAILKPQ--QLWTGKQILSMVIPKGINHSRNDDKQGLDN 522
Query: 491 CGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D +I+ E+L G ++ T+ S ++ I EKG E +FF + Q ++
Sbjct: 523 PNDVGMMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFTATQMVVNYWFLH 582
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQA-------------LYSLLYHRMSTQNELVDLQIE 596
+GFS+ + D + + I EI L L T E + +
Sbjct: 583 NGFSIGIGDTIADRQTMEEITNEIAKAKLKVQGIVSDAQLNKLKQEPGMTLRESFEAGVS 642
Query: 597 NHIRHVKMLVAK----FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + V K + K + + ++ + S + + Q + +G Q+ + GK
Sbjct: 643 QVLNGARDTVGKNAESSLSKQNAVKQMVIAGSKGSFINISQMSACVGQQMVE-GKRIPYG 701
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 702 FKFRTLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 756
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATA 772
G + + L+ L DV + YDGTVRN + II F Y + + S+ VL
Sbjct: 757 TGYIQRRLVKALEDVGVKYDGTVRNSLGD-IINFVYGEDGLDAASV-----EYQVLDTMR 810
Query: 773 MSNPAYK 779
+SN A++
Sbjct: 811 LSNAAFE 817
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 279/632 (44%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V ++R G+P +E E+ LQ V Y+ + + KS+
Sbjct: 188 DLTYKLAEIVRANQNVMRCLNEGSPEHVLREFEAL-LQYHVATYMDNDIAGQPKAMQKSN 246
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 247 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAR 299
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NIN L L+DN + + + +G G FL+ G
Sbjct: 300 TLTYPEVVTPYNINKLGTLIDNGPDVHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWK 359
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I DGD + NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 360 VERHIQDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 419
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ EL V ++S + + D L + K+ + FL K + M
Sbjct: 420 PQSEEARAELKELCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNIMM 479
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY------- 495
+ +P+PA+ K R RWT QI+ VLP G + GDR+
Sbjct: 480 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPAGLNLLRLDKDKAPLGDRFSPPADGG 537
Query: 496 -LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+ E++ G F + ++ + I+ +IF E G E L FF+ Q ++ L +GFS+
Sbjct: 538 LFVHGGELMFGMFSKKSVGAAGGGIIHTIFNEYGHEVALNFFNGAQTVVNYWLLHNGFSI 597
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDL--------------QIENH 598
+ D + I++ ++ + +T N L L + N+
Sbjct: 598 GIGDTIPDAGTIEKIEQAVRVRKEEVDTITASATDNTLEPLPGMNVRETFESKVSRALNN 657
Query: 599 IRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
R V + LK G + S S + + Q +G Q S GK
Sbjct: 658 ARDEAGTVTEKSLKDCNNGVQMARSGSKGSTINISQMMAIVG-QQSVEGKRIPFGFKYRT 716
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 717 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 771
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 772 RKLVKALEEVMVKYDGTVRNSLGD-VIQFLYG 802
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 168/639 (26%), Positives = 280/639 (43%), Gaps = 83/639 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQ 389
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + L +G G FL+ G
Sbjct: 390 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWR 449
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 450 VERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 509
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 510 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQIMNILL 569
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCG-DR---------------- 494
+ +P+PA+ K R RWT Q++ VLP G + DR
Sbjct: 570 WVPDWDGVIPQPAILKPR--PRWTGKQVISMVLPAGLNLLRVDRDKAPLSEKFSPLTDGG 627
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + I+ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 628 LLVHSGELMYGMFSKKTVGATGGGIIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSI 687
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
+ D A + I++ ++ R +E+ +N + + + + +S
Sbjct: 688 GIGDTIPDLATIQKIEEAVRV-------RKEEVDEITASATDNTLEPLPGMNVRETFESK 740
Query: 615 TLGYLIDSK------------------------SDSAVSKVVQQAGFLGLQLSDRGKFYS 650
L +++ S ++ + Q +G Q S GK
Sbjct: 741 VSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIP 799
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 800 FGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 854
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 855 AETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 892
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 151/543 (27%), Positives = 255/543 (46%), Gaps = 48/543 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD +++++GVP+ IA+ +T+ ERV +NI+YLQELV N
Sbjct: 272 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQN 331
Query: 306 KLC------LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
D L+ + TFL+ G +V R + DGD V NR P+ HK S+
Sbjct: 332 GPTEYPGARYVIRDTGDRIDLKYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSM 391
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
A + + T ++N + P +ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 392 MAHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQ 451
Query: 420 NGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWT 475
+ + D L + K + F+D+ F Q + ++ +P PA+ K + WT
Sbjct: 452 ANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPK--PLWT 509
Query: 476 ALQILQSVLPPGFD-----------SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSI 523
QIL +P G + D+ + I+ E++ G D+ T+ + I+ I
Sbjct: 510 GKQILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVI 569
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQAL 576
F EKGPE F +Q ++ L GFS+ + D KA + I ++E+ +
Sbjct: 570 FREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKATMEAITNFISDAKREVSDV 629
Query: 577 Y------SLLYHRMSTQNELVDLQIE---NHIRHVKMLVAKFILK-SSTLGYLIDSKSDS 626
LL T E + ++ N R A+ LK + + ++ + S
Sbjct: 630 IIAAQEDKLLPEPGMTIRESFEAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKG 689
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q + +G Q S GK HF + +Y G ++ + G
Sbjct: 690 SFINISQMSACVG-QQSVEGKRIPYGFKYRTLPHFTKD-----DYSPESRGFVENSYLRG 743
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV++ YDGTVRN + I+QF
Sbjct: 744 LTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGD-IVQF 802
Query: 747 DYA 749
Y
Sbjct: 803 VYG 805
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 279/639 (43%), Gaps = 83/639 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G+P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGQPQAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 389
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V NI L ELVDN + + + +G G FL+ G
Sbjct: 390 TLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWR 449
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD + NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 450 VERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 509
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V Q++S + + D L + K+ + FL K + +
Sbjct: 510 PQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILL 569
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-R 494
+ +P+PA+ K R RWT Q++ VLPPG F D
Sbjct: 570 WVPDWDGVIPQPAILKPR--PRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGG 627
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + ++ +IF E GPE + FF+ Q ++ L GFS+
Sbjct: 628 LLVHGGELMYGMFSKKTVGATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSI 687
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS 614
+ D A + I++ ++ R +E+ +N + + + + +S
Sbjct: 688 GIGDTIPDLATIEKIEEAVRV-------RKEEVDEITASATDNTLEPLPGMNVRETFESK 740
Query: 615 TLGYLIDSK------------------------SDSAVSKVVQQAGFLGLQLSDRGKFYS 650
L +++ S ++ + Q +G Q S GK
Sbjct: 741 VSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIINISQMTAVVG-QQSVEGKRIP 799
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 800 FGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 854
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 855 AETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYG 892
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 253/547 (46%), Gaps = 56/547 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA +T+ ERV +NI YLQELV N
Sbjct: 350 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRN 409
Query: 306 KLCLTYS-------DGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
TY D LR + FL+ G +V R + DGD V NR P+ HK S
Sbjct: 410 GPT-TYPGARYVVRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQPSLHKMS 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ + V + T ++N + P +ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 469 MMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIVSP 528
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K + FLD Q + ++ +P PA+ K + W
Sbjct: 529 QANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILKPK--PLW 586
Query: 475 TALQILQSVLP---------------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEI 519
T QIL +P P FD D LI+ E + G D+ + + +
Sbjct: 587 TGKQILSLTIPRGINIQRASENKSSNPVFD---DGMLIENGEFIYGIVDKKIVGASAGGL 643
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI------ 573
V +F EKGPE + F LQ ++ LF +GFS+ + D + I K I
Sbjct: 644 VHVVFREKGPEATKQLFTGLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIAESKAK 703
Query: 574 --QALYSLLYHRMSTQ-----NELVDLQIENHIRHVK----MLVAKFILKSSTLGYLIDS 622
Q + R+ T+ E + ++E + + K + + + + ++ +
Sbjct: 704 VAQVIEDANMDRLKTKPGMTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVKQMVVA 763
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q + +G Q S G+ HF + D P A+ G ++
Sbjct: 764 GSKGSFINISQMSVCVG-QQSVEGRRIPFGFRHRTLPHFTK----DDFSPEAR-GFVENS 817
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV++CYDGTVRN +
Sbjct: 818 YLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD- 876
Query: 743 IIQFDYA 749
+IQF Y
Sbjct: 877 LIQFVYG 883
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S+ +H +L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTIDRNFKCQTCGEGM-A 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP +++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFFNKVK 102
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 169/634 (26%), Positives = 286/634 (45%), Gaps = 63/634 (9%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL------ 214
DG +T D L +V+K + +R S G P E E+ LQ + Y+
Sbjct: 271 DGGATRGEDDLTYKLAEVIKANQAVRKFESEGAPAHVITEFETL-LQWHIATYMDNDLPG 329
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ + KS R + + + K ++R + K FS+R+VITGD ++++
Sbjct: 330 QPQALQKSGRPIKSL-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQ 382
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP+ IA+ +T+ ERV +NI+YLQELV N D LR + T
Sbjct: 383 VGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEYPGARYVVRDTGDRIDLRYNKRADT 442
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + + + T ++N + P +ADFDG
Sbjct: 443 FLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDG 502
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS +AE+ ++ V + ++S + + D L + K + F+D+
Sbjct: 503 DEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRD 562
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGD 493
F Q + ++ +P PA+ K + WT QIL +P G + D
Sbjct: 563 FVQNILLWVPGWDGVVPPPAILKPK--PLWTGKQILSMCIPKGINLLRDDENQTSIPIAD 620
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ L I+ E++ G D+ + + ++ IF EKGP+ F +Q ++ L GF
Sbjct: 621 KGLWIEDGEIVYGVVDKKCVGASQGGLIHVIFREKGPQVTRGLFSGIQMVVNYWLLHHGF 680
Query: 553 SVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRM------STQNELVDLQIE--- 596
S+ + D KA + I ++E+ SL T E + ++
Sbjct: 681 SIGIGDTVPDKATMEAITNFISEAKREVSETISLAQEDKLQPEPGMTIRESFEAKVNRAL 740
Query: 597 NHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK + + ++ + S + + Q + +G Q S GK
Sbjct: 741 NTARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVG-QQSVEGKRIPYGFKY 799
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 800 RTLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 854
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 855 IQRRLLKALEDVMVTYDGTVRNSLGD-IVQFVYG 887
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 173/642 (26%), Positives = 291/642 (45%), Gaps = 79/642 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 264 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQL-LQFHVATYMDNDIAG 322
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 323 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 375
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGH 327
+GVP IA +TF ERV +NI++LQ+LV N TY D LR +
Sbjct: 376 VGVPRSIAMNLTFPERVTPYNIHWLQDLVRNGPT-TYPGARYVVKDTGERIDLRYNKRAD 434
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 435 AFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFD 494
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 495 GDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDW 554
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
Q + ++ +P P + K + WT Q+L +P P F
Sbjct: 555 TQVQNILLWVPDWDGTVPTPVVIKPK--PLWTGKQLLSMCIPRGINIHRNPDPKSSNPVF 612
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
D D LI+ E++ G D+ T+ + +V +F EKGPE + F LQ ++ LF
Sbjct: 613 D---DGVLIENGELIFGIVDKKTVGASQGGLVHVVFREKGPEMTRQLFTGLQQVVNYWLF 669
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQ-----NELVDLQI 595
+GFS+ + D + + +I ++I Q + + R+ Q E + ++
Sbjct: 670 HNGFSIGIGDTIADRKTMAHITEQIAIRKQTVAQIIDDAAHDRLKPQPGMTIRESFESKV 729
Query: 596 ENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
E + + K + + + + ++ + S + + Q + +G Q+ + +
Sbjct: 730 ERELNLARDQNGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFG 789
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ ++
Sbjct: 790 FRHRTL-----PHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTA 839
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVRN + +IQF Y
Sbjct: 840 VKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGD-LIQFVYG 880
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQ---LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H + L +P LG KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKIGGLMDPRLGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP + ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFVVKVK 102
>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
Length = 1665
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 186/700 (26%), Positives = 316/700 (45%), Gaps = 75/700 (10%)
Query: 99 LQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLS 156
LQIK Q + +++L R+ + + F P+D IL LP+PP +
Sbjct: 175 LQIKVTQEEQDYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRD-LILTVLPIPPPQVR 233
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV 216
P ++ + +L+ ++ V + +++ + SG + + LQ V +
Sbjct: 234 -PAVAFASAKSDDELTHQIMSIVKRNIQLRKDKESGVK--AAVDRSRALLQEHVATFFNN 290
Query: 217 RGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
T A+ G ++ S T K ++R + FS+R+VITGD V+
Sbjct: 291 ASTYYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGSRVDFSARTVITGDPNIDVD 346
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS--------- 324
E+GVPF +A +TF ERVNV N L E V TY S++Y +R
Sbjct: 347 EVGVPFSVAMTLTFPERVNVINKKRLTEFVQRT---TYP--SANYIIRPNGNVTKLALVK 401
Query: 325 -KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
+ L G VV R ++DGD V NR PT H+ S+ V V + +T ++N P +
Sbjct: 402 DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYN 461
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKY 442
ADFDGD ++L PQSL KAE++E+ V K +S + + + D+LL S ++ K
Sbjct: 462 ADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDT 521
Query: 443 FLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDS 490
F+DK F Q +A++ L LP PA+ K R WT QI +LP P F
Sbjct: 522 FVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLILPEVNHPASPYDKPPFPH 579
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ +I++ ++L G + + + ++ IF E+G +EV +F + +Q + +
Sbjct: 580 NDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCF 639
Query: 551 GFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMSTQNELVDL------QIEN 597
FSV ++D L + ++ ++ + + + T+ + L + +
Sbjct: 640 AFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGQLTRKAGMSLLQSFEADVNS 699
Query: 598 HIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FY 649
+ + AK L ++++ +I++ S + + Q A F+G Q + F
Sbjct: 700 ALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFR 759
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+TL HF M +Y G+ + GL P+E H+++ RE ++ ++
Sbjct: 760 RRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAVK 809
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 810 TSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYG 848
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 25 KEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTSEPGKCEGH 71
KE + + C I HA + G P+ G CE+CG P +C GH
Sbjct: 26 KEAQIKAYAKCIIEHAKSYEH---GQPVRGGINDLRMGTTDFEYSCETCGLKHP-ECPGH 81
Query: 72 FGYIELPIPIYH 83
FGY+EL PI++
Sbjct: 82 FGYVELAEPIFN 93
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 170/632 (26%), Positives = 278/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K L +
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNLLL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 569 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 626
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + +V +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 627 VLVHGGELMYGMFSKKTVGATGGGVVHTIFNEYGPDTAMSFFNGAQRVVNYWLLHNGFSI 686
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D A + I+ ++ + +T+N L V + N
Sbjct: 687 GIGDTIPDLATIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 747 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 805
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 806 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 860
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 861 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 891
>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
Length = 1657
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 189/700 (27%), Positives = 319/700 (45%), Gaps = 76/700 (10%)
Query: 99 LQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLS 156
LQIK Q + +++L R+ + + F P+D IL +P+PP +
Sbjct: 175 LQIKVTQEEQDYVWHADNARQVLDRVSDSDATIMGFDPRFCHPRD-LILTVVPIPPPQVR 233
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV 216
P ++ G + +L+ ++ V ++ ++ + SG + + LQ V +
Sbjct: 234 -PAVAFGSAKSDDELTHQIMSIVKREHQLRKDKESGVK--AAVDRSRALLQEHVATFFNN 290
Query: 217 RGTAKSSRDVDARFGVSQDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
T A+ G ++ S T K ++R + K FS+R+VITGD V+
Sbjct: 291 ASTFYKP----AKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVD 346
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS--------- 324
E+GVPF IA +TF ERVNV N L E V TY S++Y +R
Sbjct: 347 EVGVPFSIAMTLTFPERVNVINKKRLTEFVQRS---TYP--SANYIMRPNGNVTKLALVK 401
Query: 325 -KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
+ L G VV R ++DGD V NR PT H+ S+ V V + +T ++N P +
Sbjct: 402 DRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYN 461
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKY 442
ADFDGD ++L PQSL KAE++E+ V K +S + + + D+LL S ++ K
Sbjct: 462 ADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDT 521
Query: 443 FLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDS 490
F+DK F Q +A++ L LP PA+ K R WT QI +LP P F
Sbjct: 522 FVDKYFIQSVALWLDLWELPIPAILKPR--PLWTGKQIFSLILPEVNHPASPYGKPPFPH 579
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
D+ +I++ +L G + + + ++ IF E+G +EV +F + +Q + +
Sbjct: 580 -NDKKIIQRGLLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCF 638
Query: 551 GFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRMSTQNELVDL------QIEN 597
FSV ++D + L + ++ ++ + + + T+ + L + +
Sbjct: 639 AFSVGVQDTVADASTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMSLLQSFEADVNS 698
Query: 598 HIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FY 649
+ + AK L ++++ +I++ S + + Q A F+G Q + F
Sbjct: 699 ALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFR 758
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+TL HF M +Y G+ + GL P+E H+++ RE ++ ++
Sbjct: 759 RRTL-----PHF-----MLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAVK 808
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G L + L+ L DV YDGTVRN + +IQ Y
Sbjct: 809 TSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQELIQLAYG 847
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 25 KEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTSEPGKCEGH 71
KE + + C I HA + G P+ G CE+CG P +C GH
Sbjct: 26 KERQIKAYATCRIEHAKSYEH---GQPVRGGINDLRMGTTDFDYSCETCGLKHP-ECPGH 81
Query: 72 FGYIELPIPIYH 83
FGYIEL PI++
Sbjct: 82 FGYIELAEPIFN 93
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 186/651 (28%), Positives = 294/651 (45%), Gaps = 59/651 (9%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
IL LPVPP + P IS DG S M S DL+ + + + R + G+P
Sbjct: 171 ILTVLPVPPPAVR-PSISVDGTSQGMRSEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVD 229
Query: 200 EVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIR 253
E S LQ V Y++ + G K+ + S P +A L+ ++R +
Sbjct: 230 EFVSL-LQYHVATYMDNDIAGLPKAQQK-------SGRPVKAIRARLKSKEGRLRGNLMG 281
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS+R+VITGD ++E+GVP IA+ +TF E VN +NIN + ELV N +
Sbjct: 282 KRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVNSYNINKMHELVRNGPDIHPGA 341
Query: 310 --TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR + L+ G V R I+DGD + NR P+ HK S V V
Sbjct: 342 KYVIRDNGERIDLRHHKQPQNIQLQVGWKVERHIVDGDYIIFNRQPSLHKESRMGHRVRV 401
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQS +AEV+ L V ++S +
Sbjct: 402 MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVMNLCMVPLNIVSPQRNGPLMG 461
Query: 427 LATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQS 482
+ D L + K+ + FL + + ++ S LP+PA+ K S RWT QI+
Sbjct: 462 IVQDTLCGIYKICRRDVFLTQEQVMNVLLWVPSWDGVLPQPAIVKP--SPRWTGKQIISM 519
Query: 483 VLPPGFD--------SC---GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
L PG + C D LI E++ G F + ++ + ++ +IF E+GPE
Sbjct: 520 ALVPGLNLVRKGEEGDCPVNDDGLLIDNGELIYGLFSKKSVGATGGGVIHTIFNERGPEA 579
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQ 587
+ F + Q ++ L +GFS+ + D I + + +A+ + + +T
Sbjct: 580 AVAFINGAQTIVNYWLLHNGFSIGIGDTVPDDNTTIGINQAVAEQKEAVRQITHS--ATG 637
Query: 588 NELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQ--QAGFLG--LQLS 643
NEL L N + V+K + + KS ++ +Q +AG G + +S
Sbjct: 638 NELEALPGMNIRETFESKVSKALNSARDNAGSRTEKSLKDLNNAIQMARAGSKGSTINIS 697
Query: 644 DRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
+ VE F R P +Y G ++ + GL P E H+++
Sbjct: 698 QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENPYLQGLTPAEFFFHAMA 757
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 758 GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 807
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 169/635 (26%), Positives = 283/635 (44%), Gaps = 65/635 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 168 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 226
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 227 IPQALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 279
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTY-------SDGSSSYSLREGSKGH 327
+GVP IA +T+ ERV +NI YLQELV N TY D LR +
Sbjct: 280 VGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPS-TYPGARYVVRDTGERIDLRYNKRAD 338
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 339 AFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFD 398
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 399 GDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDW 458
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDS------------C 491
Q + ++ +P PA+ K + WT QI+ V+P G +
Sbjct: 459 QQVQNILLWVPEWDGNVPTPAIIKPK--PLWTGKQIISMVIPRGINIHRAPEPKSSNPLF 516
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D ++ E+L G D+ T+ + ++ +F EKGPE F +Q ++ LF +G
Sbjct: 517 DDGMMVDNGEILFGIVDKKTVGATQGGLIHVVFREKGPEATRSVFTGIQMVVNFWLFHNG 576
Query: 552 FSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMS---------TQNELVDLQIENH 598
FS+ + D + I + I Q + ++ + T E + ++E
Sbjct: 577 FSIGIGDTIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVERE 636
Query: 599 IRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + K + + + + ++ + S + + Q + +G Q S G+
Sbjct: 637 LNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQ-SVEGRRIPFGFR 695
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 696 HRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 750
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++CYDGTVRN + ++QF Y
Sbjct: 751 YIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFIYG 784
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 194/721 (26%), Positives = 325/721 (45%), Gaps = 77/721 (10%)
Query: 87 ISELKLTMYAFQLQIKND------GVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFP 139
I +++LT+ A K++ GV ++ ++ + ++ K++ EE +L Y
Sbjct: 182 IRKVQLTLTASTKVAKSEDGNEEGGVEKKTITPQVAL-DLFKKLREEDLHRLGLNVDYAR 240
Query: 140 QDGYILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPN 195
+ I+ LPVPP + P IS DG S M S DL+ + + + R + G P
Sbjct: 241 PEWMIMTVLPVPPPAVR-PSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQEGLPA 299
Query: 196 FESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
+E LQ V Y++ R KS R + A + K+ ++R
Sbjct: 300 HVREEF-FGLLQYHVATYMDNDIAGLPRSIQKSGRPLKAI-------RARLKSKEGRLRG 351
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN---- 305
+ K FS+R+VITGD ++++GVP A+ +TF ERV V+NI+ +QELV N
Sbjct: 352 NLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRNGPDQ 411
Query: 306 ---KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ DGS G L+ G +V R I+DGD + NR P+ HK S+
Sbjct: 412 HPGAKHVIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESMMGH 471
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N + P +ADFDGD ++L PQ +AEV L +V ++S
Sbjct: 472 RVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSPQKNG 531
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D + +M KK +D + ++ S +P PA+ K + RWT Q
Sbjct: 532 PLMGIVQDTMAGCWMMTKKDVMIDYQELMNILLWVPSWDGVVPPPAIIKPQ--PRWTGKQ 589
Query: 479 ILQSVLPPGFD-----SCGD--------RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
+ PPG + S D L++ E++ G + + + + +V IF
Sbjct: 590 VASLFFPPGLNYFMPASKNDDNPHEEKKEILVQNGEIMWGRIWKQVVGASQSGVVHYIFN 649
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ-----------KEIQ 574
++GPE +EFF Q ++ + GFSV + D + I+ K ++
Sbjct: 650 DRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGDTIPDDHMVGEIEGAIVEEKLQVDKYVE 709
Query: 575 ALYSLLYHRMS--TQNELVDLQIE---NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAV 628
+ S + T E + Q + ++ R+ A ++KS + +G +++S S +
Sbjct: 710 QVQSDAMETLPGMTIRETFESQTKAALDNARNKAGDAAFALMKSCNNVGVMVNSGSKGSS 769
Query: 629 SKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLD 688
+ V Q +G Q S GK + HF P D +Y A G ++ + GL
Sbjct: 770 TNVSQMTAAVG-QQSLEGKRLPFGFKYRVLPHF----PKD-DYSPASRGFVENSYLRGLT 823
Query: 689 PYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
P E H++ RE ++ ++ +E G + + L+ L +++I YDGTVRN + I+QF Y
Sbjct: 824 PQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGD-ILQFTY 882
Query: 749 A 749
Sbjct: 883 G 883
Score = 47.0 bits (110), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG C +CG S+
Sbjct: 17 IQFGLFSPEEIKNMSV--CHIEYPETMDEQRNRPREKGLNDPKLGTIDRNTMCATCGESQ 74
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 75 -QECPGHFGHIELAAPVFHVGFITKIK 100
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 304/681 (44%), Gaps = 69/681 (10%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI +E + + F + + I+ LP+PP + DG ST DL+ +
Sbjct: 139 ILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPLAVRPSIQMDGSSTGEDDLTHKLFAI 198
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDP 236
+ ++ R ++ GTP Q+ E LQ V Y++ + G ++ + P
Sbjct: 199 IKTNADVYRCAQDGTPAHLIQQHEQL-LQYHVATYMDNDIAGQPPAAHK-------NGRP 250
Query: 237 NSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
+ +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V
Sbjct: 251 LKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVT 310
Query: 293 VHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTV 346
+NI+ LQ+LV N D LR +K L+ G V R I DGD V
Sbjct: 311 PYNIDKLQKLVRNGPTEHPGAVYVIRDDGQRIDLR-WNKREVPLQLGWKVERHINDGDVV 369
Query: 347 FINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
NR P+ HK S+ + V T ++N + P +ADFDGD ++L PQS+ +AE+
Sbjct: 370 IFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEIT 429
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPR 462
E+ V +Q++S + + + D L ++ K+ FL K L M+ LP
Sbjct: 430 EICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVPGWEGFLPT 489
Query: 463 PALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RYLIKKSEVLKG 505
PA+ K + WT Q+L ++P G + S GD + +++ E++ G
Sbjct: 490 PAILKPK--PLWTGRQMLSMIIPKGINCICYHSTHPDNEESDISPGDTKVIVENGELICG 547
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
+ T+ + ++ I + GPE FF+ Q ++ L GFS+ + D ++
Sbjct: 548 IVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGCQTVVNYWLLQHGFSIGIGDTVADRST 607
Query: 566 LWNIQKEI------------QALYSLLYHR-----MSTQNELVDLQIENHIRHVKMLVAK 608
+ I I QA L + T LV+ + + +
Sbjct: 608 VMTITSIISNATNNVNDLIIQAQQDKLECKPGMTLRETFESLVNRALNTARDDAGKMAQQ 667
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
+ + + + ++ S S + V Q +G Q + GK HF + D
Sbjct: 668 SLREDNNVKQMVISGSKGSFINVSQMTACVGQQ-NVEGKRIPFGFKYRTLPHFTK----D 722
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+ P ++ G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 723 DHSPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVM 781
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN + +IQF Y
Sbjct: 782 VKYDGTVRNSLGH-VIQFCYG 801
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 287/637 (45%), Gaps = 69/637 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K V + R + G P E E LQ V Y++
Sbjct: 264 DGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 322
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 323 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 375
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 376 VGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 435
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 436 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 495
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 496 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWN 555
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD 489
Q + ++ +P P++ K + WT QIL V+P P FD
Sbjct: 556 QVQNILLWVPDWDGNVPIPSIIKPK--PLWTGKQILSMVIPRGINIHRAPEPKSSNPVFD 613
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D LI+ E++ G ++ T+ + +V +F EKGP+ + F +Q ++ LF
Sbjct: 614 ---DGMLIENGEIVFGIVEKKTVGASQGGLVHVVFREKGPDATRQIFTGIQMVVNFWLFH 670
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE 596
+GFS+ + D + I ++I + + + R+ T E + +++
Sbjct: 671 NGFSIGIGDTIADTKTMSYITQQISSQKVKVAGIIDDATHDRLKAAPGMTIRESFESKVQ 730
Query: 597 NHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + ++ KS + + ++ + S + + Q + +G Q S G+
Sbjct: 731 RELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGRRIPFG 789
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 790 FRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 844
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV++CYDGTVRN + ++QF Y
Sbjct: 845 TGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFVYG 880
Score = 47.4 bits (111), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H +L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 287/637 (45%), Gaps = 69/637 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K V + R + G P E E LQ V Y++
Sbjct: 261 DGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 319
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 320 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 372
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 373 VGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 432
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 433 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 492
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 493 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWN 552
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD 489
Q + ++ +P P++ K + WT QIL V+P P FD
Sbjct: 553 QVQNILLWVPDWDGNVPIPSIIKPK--PLWTGKQILSMVIPRGINIHRAPEPKSSNPVFD 610
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D LI+ E++ G ++ T+ + +V +F EKGP+ + F +Q ++ LF
Sbjct: 611 ---DGMLIENGEIVFGIVEKKTVGASQGGLVHVVFREKGPDATRQIFTGIQMVVNFWLFH 667
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE 596
+GFS+ + D + I ++I + + + R+ T E + +++
Sbjct: 668 NGFSIGIGDTIADTKTMSYITQQISSQKVKVAGIIDDATHDRLKAAPGMTIRESFESKVQ 727
Query: 597 NHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + ++ KS + + ++ + S + + Q + +G Q S G+
Sbjct: 728 RELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGRRIPFG 786
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 787 FRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 841
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV++CYDGTVRN + ++QF Y
Sbjct: 842 TGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFVYG 877
Score = 47.4 bits (111), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS-------ISHASQLA---NPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ +H +L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDRNFKCQTCGEGM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 184/708 (25%), Positives = 310/708 (43%), Gaps = 74/708 (10%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + V ++ S +V ++LKRI +E + L Y D IL+ LP+P +
Sbjct: 120 QEQLMPEPVERKQQLSAEKVLDILKRISDEDCQLLGLNPKYARPDWMILQVLPIPSPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVE-IIRSSRSGTPNFESQEVESNDLQLAVGQYL- 214
P + + S D L +++ E + R R+G P E + LQ + Y
Sbjct: 180 -PSVMMNTTARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFD 237
Query: 215 -----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAY 269
+ R T +S R + + + KA ++R + K FS+R+VIT D
Sbjct: 238 NDLPGQPRATQRSGRPIKSIC-------NRLKAKEGRIRGNLMGKRVDFSARTVITPDPN 290
Query: 270 KRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---- 325
++++GVP+ IA +T+ E V +NI L+ELVDN + Y +R+ +
Sbjct: 291 INIDQLGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDL 350
Query: 326 ------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 379
L G V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 351 RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 410
Query: 380 GPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF 439
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + +
Sbjct: 411 SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 470
Query: 440 KK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------- 485
K+ F++K + M+ +P P + K R WT Q+ ++P
Sbjct: 471 KRDTFIEKDVFMNILMWWEDFDGKIPSPTILKPR--PLWTGKQVFNLIIPRQINLIRYSA 528
Query: 486 ------PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDS 538
GF + GD + I+K EVL G + T+ + ++ I+ E GP+ +F
Sbjct: 529 WHSESETGFITPGDTVVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGH 588
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNEL------ 590
Q L+ L GFS+ + D A + I + I + + H +++ Q L
Sbjct: 589 TQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGR 648
Query: 591 -VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ 641
+ EN + V K + +S+ L ++ + S + + Q +G Q
Sbjct: 649 TMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-Q 707
Query: 642 LSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
+ GK L HF R +Y G ++ + GL P E H++ RE
Sbjct: 708 QNVEGKRIPFGLFGRSLPHFTRD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 762
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 763 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 169/634 (26%), Positives = 280/634 (44%), Gaps = 63/634 (9%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 258 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHVATYMDNDIAG 316
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 317 IPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 369
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 370 VGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 429
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
FL+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 430 FLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMYYSTFRLNLSVTPPYNADFDG 489
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K + FLD
Sbjct: 490 DEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWN 549
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SCG 492
Q + ++ +P PA+ K + WT QIL +P G +
Sbjct: 550 QVQNILLWVPEWDGSVPIPAILKPK--PLWTGKQILSLAIPRGINIHRSPDPKSSNPVFD 607
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D LI+ E++ G ++ T+ + +V +F EKGPE + F LQ ++ LF +GF
Sbjct: 608 DGVLIENGELIFGIVEKKTVGASQGGLVHVVFREKGPEATRQLFTGLQMVVNYWLFHNGF 667
Query: 553 SVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQ---------NELVDLQI 595
S+ + D + + I + I + + + R+ LV+ Q+
Sbjct: 668 SIGIGDTIADRGTMSYITQTIADSKANVAKIINDATHDRLKAAPGMTIRESFESLVERQL 727
Query: 596 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
K + + + + ++ + S + + Q + +G Q S G+
Sbjct: 728 NLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGRRIPFGFRH 786
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + D P ++ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 787 RTLPHFTK----DDFSPESR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 841
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 842 IQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 874
Score = 47.0 bits (110), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHA------------SQLANPFLGLPLEFGKCESCGTSE 64
++FG+ + +EI +IS I H L +P +G KC++CG
Sbjct: 19 VQFGILSPEEI--KAISVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCGEGM 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 77 -SECPGHFGHIELARPVFHPGFIIKVK 102
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 193/721 (26%), Positives = 324/721 (44%), Gaps = 93/721 (12%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
+L LPVPP + P IS DG S M S DL+ + + + R G+P ++
Sbjct: 250 VLTVLPVPPPAVR-PSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEMEGSPQHVTE 308
Query: 200 EVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
E LQ V Y++ R KS R V + + K+ ++R +
Sbjct: 309 EF-VQLLQFHVATYMDNDIAGVPRALQKSGRPVKSI-------RARLKSKEGRLRGNLMG 360
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS+R+VITGD ++++GVP IA+ +TF E VN +NI LQELV N
Sbjct: 361 KRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNIQKLQELVRNG---PNEH 417
Query: 314 GSSSYSLR-EG-------SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ Y +R EG +K L+ G V R I+DGD + NR P+ HK S+ V
Sbjct: 418 PGARYVIRGEGERIDLRRAKNDVQLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVK 477
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N + P +ADFDGD ++L PQS +AEV EL +V K ++S +
Sbjct: 478 VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELCAVPKNIVSPQKNGPLM 537
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D + + +M ++ +D + ++ + +P+PA+ R WT QI+
Sbjct: 538 GIVQDTMAGIYMMTRRDVMIDYENVMNILLWLPNWDGVVPQPAI--LRPKPMWTGKQIIS 595
Query: 482 SVLPPGFD--SCGDR------------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFE- 526
LP G + D L++ +++ G F + + + +V IF +
Sbjct: 596 LALPAGLNLQRMDDENTPHIPLKEKKGLLVQNGDLVLGRFVKKIVGASQGGVVHYIFNDN 655
Query: 527 --KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM 584
+GP+ +EFF++ Q ++ L +GFSV + D ++ I+ +Q L +
Sbjct: 656 GSEGPKAAVEFFNAAQRVVCYWLLHNGFSVGIGDTVPNQDMANKIEAAVQKEKDQLLELV 715
Query: 585 ST--QNELVDLQ---------------IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSA 627
T NEL L ++N + + + + +G ++ S S +
Sbjct: 716 KTVENNELETLPGMTIRETFESKAKSFLDNARNNAGDIAFNGMRACNNVGTMVQSGSKGS 775
Query: 628 VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGL 687
+ V Q +G Q S GK HF P D +Y A G ++ + GL
Sbjct: 776 STNVSQMTAAVG-QQSLEGKRLPFGFKYRTLPHF----PKD-DYSPASRGFVENSYLRGL 829
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P+E H++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + I+QF
Sbjct: 830 TPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMVKYDGTVRNSMGD-IVQFI 888
Query: 748 YAVNARKSHSLFPAGEPVGVLAATAMS----------NPAYKAVLDSSPSSNNSWELMKE 797
Y + + + P + + ++ A+A + NPA K ++ +N+ E+ E
Sbjct: 889 YGEDGLDAMCIEP--QTLDIITASAAAFDKKYKIDIINPASKDLM----LTNDMLEMADE 942
Query: 798 I 798
I
Sbjct: 943 I 943
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 169/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 569 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 626
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + IV +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 627 VLVHGGELMYGMFSKKTVGASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSI 686
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D + I+ ++ + +T+N L V + N
Sbjct: 687 GIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 747 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 805
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 806 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 860
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 861 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 891
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 173/638 (27%), Positives = 280/638 (43%), Gaps = 69/638 (10%)
Query: 161 SDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+DG + S D L ++K + R G P E E LQ V Y++
Sbjct: 296 ADGGALRSEDDLTYKLGDIIKASANVRRCEEEGAPAHVISEFEQL-LQFHVATYMDNDIA 354
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
+ KS R V A + K ++R + K FS+R+VITGD ++
Sbjct: 355 GIPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELD 407
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGH 327
E+GVP IA +T+ ERV +NI YLQ LV N D LR +
Sbjct: 408 EVGVPRSIAMTLTYPERVTPYNIAYLQGLVRNGPREYPGARYVIRDTGERIDLRYNKRAD 467
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
FL+ G +V R + DGD V NR P+ HK S+ V + T ++N + P +ADFD
Sbjct: 468 AFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMCHRVRLMPYSTFRLNLSVTPPYNADFD 527
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD +++ PQS +AE+ ++ V KQ++S + + D L + K + FLD
Sbjct: 528 GDEMNMHVPQSEETRAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFTLRDCFLDW 587
Query: 447 AFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
Q + ++ + +P P + K + W+ QIL +P P F
Sbjct: 588 QQVQNILLWVPNWDGTIPTPTILKPK--PLWSGKQILSLTIPRGINIYRSPDPKSSNPVF 645
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
D D LI+ E++ G ++ T+ + ++ F EKGPE F LQ ++ LF
Sbjct: 646 D---DGMLIENGEIIFGVVEKKTVGASQGGLIHVCFREKGPEATRTLFTGLQQVVNYWLF 702
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQI 595
+GFS+ + D K + I ++I +A+ R+ T E + ++
Sbjct: 703 HNGFSIGIGDTVADKKTMAYITEQIKMRKQNVAKAVEDASSDRLKAAPGMTIRESFESRV 762
Query: 596 ENHIR----HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
E + H K + + + + ++ + S + + Q + +G Q S GK
Sbjct: 763 ERELNLARDHSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVG-QQSVEGKRIPF 821
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 822 GFRHRTLPHFTK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 876
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L DV +CYDGTVRN + +IQF Y
Sbjct: 877 ETGYIQRRLVKALEDVTVCYDGTVRNSLGD-LIQFVYG 913
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCS----ISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI S++ I A+ L +P +G KC++CG
Sbjct: 19 VQFGILSPEEIKAYSVAKIEHPEVIDEATHKLKVGGLNDPRMGTTDRNFKCQTCGEGM-A 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELARPVFHPGFIVKVK 102
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 169/640 (26%), Positives = 278/640 (43%), Gaps = 67/640 (10%)
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+ DG S DL+ + + + ++ G P ++ E + LQ V +++
Sbjct: 175 LVDGTSRGEDDLTFKLCDIIKANAFLQKAEADGVPGHRIKDHE-DLLQFHVATFVDNEIS 233
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
R +S R + A S K ++R + K FS+R+VITGD ++
Sbjct: 234 GMPRAMQRSGRPIKA-------IRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSID 286
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR-EGSKG 326
++GVP IA+ +T+ E V +NIN LQELV N D LR G+KG
Sbjct: 287 QVGVPRSIARNLTYPEIVTPYNINKLQELVHNGPTQHPGAKYVIRDNGDRVDLRFIGAKG 346
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
+ L+ G +V R + DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 347 NLGLQYGWIVERHLDDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADF 406
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD +++ PQSL AKAE+ +L V Q++S + + + D L + K + F+D
Sbjct: 407 DGDEMNMHVPQSLEAKAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMD 466
Query: 446 KAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP-----------PGFDSC 491
K L M+ + +P PA+ K + WT QIL V+P P +S
Sbjct: 467 KNMVMNLLMWVPNWDGNVPPPAIMKPK--PLWTGKQILSLVIPKVNCITHHSTHPDDEST 524
Query: 492 ----GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
GD R +++ E+L G + T+ + +V + E GPE + Q ++
Sbjct: 525 DISPGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYW 584
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE----------------- 589
L +GFS+ + D A + I K I + + + T
Sbjct: 585 LLHNGFSIGIGDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEA 644
Query: 590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
V+ + + AK S+ + ++ S S + + Q + +G Q + GK
Sbjct: 645 QVNRALNEAVNKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVG-QQNVEGKRI 703
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 704 PFGFQYRSLPHF-----VKDDYSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVK 758
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+++ YDGTVRN IIQF Y
Sbjct: 759 TAETGYIQRRLIKALEDIMVKYDGTVRN-AQGHIIQFAYG 797
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 177/654 (27%), Positives = 285/654 (43%), Gaps = 64/654 (9%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
++ LPVPP + P IS G + DL+ + + + + G+P E E
Sbjct: 155 LITVLPVPPPAVR-PSISMGGAARGEDDLTHKLGDIIRANINLRNHEADGSPAHVVNEYE 213
Query: 203 SNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGF 258
+ LQ V +++ + + S P +A L+ ++R + K F
Sbjct: 214 AL-LQFHVATFMD-----NDTAGIPQAMQKSGRPLKAIRARLKGKEGRIRGNLMGKRVDF 267
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYS 312
S+R+VITGD ++++GVP IA+ +TF E V NI+ LQ+LV+N +
Sbjct: 268 SARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNNGPNEHPGAKYVFK 327
Query: 313 DGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTV 372
D L+ G L+ G V R I DGD V NR P+ HK S+ + V T
Sbjct: 328 DNGDRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHKMSMMGHKIKVMPYSTF 387
Query: 373 KINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL 432
++N + P +ADFDGD ++L PQS KAEV E+ V KQ++S + + D L
Sbjct: 388 RLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTL 447
Query: 433 LSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP-- 486
++ K+ FL + F + M+ +P P + K WT QI+ ++P
Sbjct: 448 CGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKP--IPLWTGKQIMSLIIPKIN 505
Query: 487 --GFDSC-----------GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
G+ S GD + LI+ E+L G + T+ S N I+ + E GPE
Sbjct: 506 IVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETA 565
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMS--- 585
FF+ Q ++ L +GFS+ + D + + I K I QA+ ++
Sbjct: 566 KLFFNGTQTVVNYWLLQNGFSIGIGDTIADRNTMETINKAIASAKQAVNEVILQAQQCKL 625
Query: 586 ------TQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQA 635
T E + + H+ + KS + + ++ S S + + Q
Sbjct: 626 ECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQMT 685
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
+G Q + GK HF + D P ++ G ++ + GL P E H
Sbjct: 686 ACVG-QQNVEGKRIPFGFKYRTLPHFTK----DDQSPESR-GFVENSYLRGLTPQEFFFH 739
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L DV I YDGTVRN + IIQF Y
Sbjct: 740 AMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH-IIQFCYG 792
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 172/638 (26%), Positives = 288/638 (45%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
DG S DL+ + + + R + G P E E LQ V Y+ E+ G
Sbjct: 259 DGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL-LQFHVATYMDNEIAGQ 317
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VITGD ++E+
Sbjct: 318 PQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEL 370
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +T+ E V +NI LQELV N D LR + G
Sbjct: 371 GVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDI 430
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
LR G V R I DGD V NR P+ HK S+ + V T ++N + P +ADFDG
Sbjct: 431 PLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDG 490
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ E+ V KQ++S + + + D L + K + FL +
Sbjct: 491 DEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRN 550
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR---------- 494
+ ++ LP P + K + WT QIL ++P G + D
Sbjct: 551 AVMNIMLWVPDWDGILPPPVILKPKV--LWTGKQILSLIIPKGINLIRDDDKQSLSNPTD 608
Query: 495 --YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI+ E++ G D+ T+ + +V +I+ EKGPE FF+ +Q ++ L +GF
Sbjct: 609 SGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGF 668
Query: 553 SVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQN--------ELVDLQIE 596
S+ + D + + + + + + ++R+ + E +I
Sbjct: 669 SIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRIL 728
Query: 597 NHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSK 651
N R A+ LK S+ + ++ + S + + Q + +G Q+ + + F +
Sbjct: 729 NQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYR 788
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TL HF P D + P ++ G I+ + GL P E H+++ RE ++ ++ +
Sbjct: 789 TL-----PHF----PKDDDSPESR-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 838
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + DV++ YDGTVRN + IIQF Y
Sbjct: 839 ETGYIQRRLVKAMEDVMVRYDGTVRNAMGD-IIQFAYG 875
Score = 46.6 bits (109), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +EI + S++ ++ + Q L +P LG KC++CG +
Sbjct: 19 VQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGETM-A 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H +S++K
Sbjct: 78 DCPGHFGHIELAKPVFHIGFLSKIK 102
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 168/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 569 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 626
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + +V +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 627 VLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSI 686
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D + I+ ++ + +T+N L V + N
Sbjct: 687 GIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 747 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 805
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 806 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 860
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 861 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 891
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 172/640 (26%), Positives = 283/640 (44%), Gaps = 75/640 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----- 215
DG + S D L ++K + R + G P E E LQ V Y++
Sbjct: 181 DGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQL-LQFHVATYMDNDIAG 239
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ KS R V A + K ++R + K FS+R+VITGD ++E
Sbjct: 240 VPQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDE 292
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHT 328
+GVP IA +T+ ERV +NI YLQELV N D LR +
Sbjct: 293 VGVPRSIAMNLTYPERVTPYNIGYLQELVRNGPTAYPGARYVVRDTGERIDLRYNKRADA 352
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDG
Sbjct: 353 HLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 412
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ ++ V +Q++S + + D L + K+ + FLD
Sbjct: 413 DEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWN 472
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SCG 492
Q + ++ +P PA+ K + W+ QIL +P G +
Sbjct: 473 QVQNILLWVPDWDGSVPIPAILKPK--PLWSGKQILSMTIPRGINIHRSPDPKSSNPVFD 530
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D +I+ E++ G ++ T+ + +V +F EKGPE +Q ++ LF +GF
Sbjct: 531 DGMMIENGEIIFGIVEKKTVGASQGGLVHVVFREKGPEATRMLLTGIQMVVNYWLFHNGF 590
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
S+ + D + + I+K IQ R S +L++ I +H++ + + +
Sbjct: 591 SIGIGDTIVDLPTMAYIRKSIQ-------DRKSNVAKLIEDAIHDHLKAKPGMTLRESFE 643
Query: 613 SST---LGYLIDS---------KSDSAVSKVV---QQAGFLGL--------QLSDRGKFY 649
S L D K D+ V ++V + F+ + Q S G+
Sbjct: 644 SMAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRI 703
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
HF + D P A+ G ++ + GL P E H+++ RE ++ ++
Sbjct: 704 PFGFRHRSLPHFTK----DDFGPDAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 758
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++CYDGTVRN + +IQF Y
Sbjct: 759 TAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFIYG 797
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 186/712 (26%), Positives = 315/712 (44%), Gaps = 82/712 (11%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + V ++ S +V ++LKRI +E + L Y D IL+ LP+PP +
Sbjct: 120 QEQLMPEPVERKQQLSAEKVLDILKRISDEDCQMLGLNPKYARPDWMILQVLPIPPPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D S DL+ + + + R R+G P E + LQ + Y
Sbjct: 180 PSVMMDTTSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + + KA ++R + K FS+R+VIT D
Sbjct: 239 DLPGQPRATQRSGRPIKSIC-------NRLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++E+GVP+ IA +T+ E V +NI L+ELVDN + Y +R+ +
Sbjct: 292 NIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
L G V R +MDGD V NR P+ HK S+ + + T ++N +
Sbjct: 352 YLKKSSDHHLELGYKVERHLMDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 471
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP----------- 485
+ F++K + M+ + +P P + K R WT Q+ ++P
Sbjct: 472 RDTFIEKDVFMNILMWWENFDGKIPSPTILKPR--PLWTGKQVFNLIIPRQINLIRYSAW 529
Query: 486 -----PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GF + GD + I+K EVL G + T+ + ++ I+ E GP+ +F
Sbjct: 530 HSESETGFITPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS------LLYHRMSTQNELVDL 593
Q L+ L GFS+ + D A + I + I + L H+ + + E
Sbjct: 590 QWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGRT 649
Query: 594 QIENHIRHVKMLV-----------AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
+E+ V ++ K + +S+ L ++ + S + + Q +G Q
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQ 708
Query: 643 SDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSI 697
+ GK F+ ++L HF R +Y G ++ + GL P E H++
Sbjct: 709 NVEGKRIPFGFFGRSL-----PHFTRD-----DYGPESRGFVENSYLRGLTPQEFFFHAM 758
Query: 698 STREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
punctatus]
Length = 792
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 180/650 (27%), Positives = 295/650 (45%), Gaps = 78/650 (12%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
I+ LPVPP + DGV+T DL+ + VL + + G+P E E
Sbjct: 164 IITVLPVPPMAVRPAVSMDGVATNQDDLTHKLRDIVLANSFLRKHETEGSPAHVINEFEK 223
Query: 204 NDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSG 257
LQ + Y++ + G S + S P + +A L+ ++R + K
Sbjct: 224 L-LQYHIATYMDNDIAGLPPSLQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVD 275
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSS 317
FS+R+VITGD ++E+GVP IA+ +TF E V +NI+ LQE+V K L + G +
Sbjct: 276 FSARTVITGDPNLSIDEVGVPRSIARNLTFPETVTPYNIHRLQEMV-RKGPLEH--GGAK 332
Query: 318 YSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
Y +++ + G L+ G V R +MD D V NR P+ HK S+ V V
Sbjct: 333 YVIKDDGQRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNRQPSLHKMSMMGHRVKVM 392
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T + N + P +ADFDGD ++L PQS KAE++EL V KQ++S + +
Sbjct: 393 PYSTFRXNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSPQKNAPVMGI 452
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSV 483
D L ++ K+ FL + F L M+ +P+PA+ K WT QI+ V
Sbjct: 453 VQDTLCGIRKFTKRDTFLRRDFVMNLLMWVPDWDGTVPQPAILKP--VPLWTGKQIMSLV 510
Query: 484 LPP-----GFDSCGD-------------RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
+PP G+ S D + LI+ E+L G + T+ S N I+
Sbjct: 511 IPPKINVTGYHSAFDEQTDKDDGSSSDCKVLIENGELLTGILCKKTVGSSANGIIHVTMN 570
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK-------AALWNIQKEIQALYS 578
E GPE FF+ Q ++ L +GFS+ + D + + + N +KE+ +
Sbjct: 571 EHGPEAAKAFFNGTQLVVNHWLLQNGFSIGIGDTIADRPTSDQITSTISNAKKEVTKIIE 630
Query: 579 L-----------LYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDS 626
+ R S ++ LV+ ++ N R A+ LK + + ++ + S
Sbjct: 631 KAQSDKLEGLPGMTIRESFES-LVNKEL-NRARDNAGKSAQASLKEYNNVKQMVVAGSKG 688
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q + +G Q + GK HF + D + P ++ G ++ + G
Sbjct: 689 SYINISQMSACVG-QQNVEGKRIPFGFKYRSLPHFTK----DDHTPESR-GFVENSYLRG 742
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
L P E H++ RE ++ ++ +E G + + L+ L D++ YDGTVR
Sbjct: 743 LTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLMAQYDGTVR 792
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 173/638 (27%), Positives = 290/638 (45%), Gaps = 71/638 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
DG S DL+ + + + R + G P E E LQ V Y+ E+ G
Sbjct: 259 DGSSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL-LQFHVATYMDNEIAGQ 317
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VITGD ++E+
Sbjct: 318 PQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEL 370
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +T+ E V +NI LQELV N D LR + G
Sbjct: 371 GVPRTIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDI 430
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
LR G V R I DGD V NR P+ HK S+ + V T ++N + P +ADFDG
Sbjct: 431 PLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDG 490
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS +AE+ E+ V +Q++S + + + D L + K + FL +
Sbjct: 491 DEMNMHVPQSEETRAEIQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLSRD 550
Query: 448 FTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR---------- 494
+ ++ + +P P + K + WT QIL V+P G + D
Sbjct: 551 VVMNIMLWVPNWDGVVPPPVILKPK--PLWTGKQILSLVIPKGINLTRDDDKQTYINPND 608
Query: 495 --YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI+ +++ G D+ T+ + +V +I+ EKGPE FF+ +Q ++ L +GF
Sbjct: 609 KGMLIENGDIVYGVVDKKTVGASQGGLVHTIWKEKGPEVCKSFFNGIQRVVNFWLLHNGF 668
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVD--------------LQIE 596
S+ + D A + +I + ++ + + + QN L +I
Sbjct: 669 SIGIGDTIADLATMKDITRTVKDARRQVTECIKDAQQNRLKPEPGMTLRETFEAKVSRIL 728
Query: 597 NHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSK 651
N R A+ LK S+ + ++ S S + + Q + +G Q+ + + F +
Sbjct: 729 NQARDNAGRSAEHSLKDSNNVKQMVASGSKGSFINISQMSACVGQQIVEGKRIPFGFKYR 788
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TL HF P D + P ++ G I+ + GL P E H+++ RE ++ ++ +
Sbjct: 789 TL-----PHF----PKDDDSPESR-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 838
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + DV++ YDGTVRN + I+QF Y
Sbjct: 839 ETGYIQRRLVKAMEDVMVRYDGTVRNAMGD-IVQFAYG 875
Score = 47.8 bits (112), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 5 TSSTILEGQIVGIRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEF 54
T S++ ++ ++FG+ + +EI + S++ + L +P LG
Sbjct: 7 TPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDETGLRPRVAGLLDPRLGTIDRQ 66
Query: 55 GKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
KC++CG + +C GHFG+IEL P++H ++++K
Sbjct: 67 FKCQTCGETM-AECPGHFGHIELAKPVFHIGFLTKIK 102
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 169/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 193 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 251
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 252 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 304
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 305 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 364
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 365 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 424
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 425 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLL 484
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 485 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 542
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + IV +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 543 VLVHGGELMYGMFSKKTVGASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSI 602
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D + I+ ++ + +T+N L V + N
Sbjct: 603 GIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 662
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 663 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 721
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 722 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 776
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 777 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 807
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 168/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 569 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 626
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + +V +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 627 VLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSI 686
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D + I+ ++ + +T+N L V + N
Sbjct: 687 GIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 747 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 805
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 806 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 860
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 861 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 891
>gi|340055761|emb|CCC50082.1| RNA polymerase IIA largest subunit, fragment, partial [Trypanosoma
vivax Y486]
Length = 1068
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 178/657 (27%), Positives = 299/657 (45%), Gaps = 71/657 (10%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D +L LPVPP + P IS G +L+ ++ V + ++ R S +
Sbjct: 237 PRD-LVLTVLPVPPPQVR-PAISFGSLKSDDELTHQIMSIVKRNNQLRRDKESDVQ--AA 292
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR----- 253
+ LQ V Y T V+ N K+ E+++ + R
Sbjct: 293 IDRTRALLQEHVATYFNNASTYYKPTKVND--------NKKLKSLTERLKGKYGRLRGNL 344
Query: 254 --KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC--- 308
K FS+R+VITGD V+E+GVPF +A +TF ERV+ N L E V +
Sbjct: 345 MGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVSAVNRKRLTEFVRRTVYPSA 404
Query: 309 --LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
+ + +G+++ + L G VV R +++GD V NR PT H+ S+ V V
Sbjct: 405 NYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRV 464
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
+ +T ++N P +ADFDGD ++L PQSL KAE++E+ V K +S + +
Sbjct: 465 LNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMG 524
Query: 427 LATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKARCSARWTALQILQSVL 484
+ D+LL S ++ K FLDK F Q +A++ L LP PA+ K WT Q+ +L
Sbjct: 525 IVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--YPLWTGKQVFSLIL 582
Query: 485 P-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
P P F +I++ ++L G + + + ++ IF E G +EV
Sbjct: 583 PEVNHPAVQQVKPPFPHNDSSVVIRRGQLLCGPITKGIVGAAPGSLIHVIFNEHGSDEVA 642
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYHR-MS 585
F + +Q + L GFSV ++D L + ++ ++ + + +R ++
Sbjct: 643 RFINGVQRVTTYFLLNFGFSVGVQDTVADAGTLRQMNEVLVRTRESVEKIGAAANNRTLN 702
Query: 586 TQNELVDLQ-----IENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAG 636
+ + LQ + + + + AK L ++++ +I++ S + Q A
Sbjct: 703 RKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAV 762
Query: 637 FLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEE 692
F+G Q + F +TL HF M +Y G+ + GL P+E
Sbjct: 763 FVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSRGMANRGYVEGLKPHEF 812
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++ +IQF Y
Sbjct: 813 FFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANDELIQFMYG 868
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 168/632 (26%), Positives = 277/632 (43%), Gaps = 69/632 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 168 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 226
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 227 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 279
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 280 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWK 339
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 340 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL K + +
Sbjct: 400 PQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLL 459
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGDR- 494
+ LP+PA+ K R RW+ Q++ VLP G F D
Sbjct: 460 WVPDWDGVLPQPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGG 517
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + +V +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 518 VLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSI 577
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D + I+ ++ + +T+N L V + N
Sbjct: 578 GIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNN 637
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + S+ + S S + + Q +G Q S GK
Sbjct: 638 ARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRT 696
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 697 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 751
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + I+QF Y
Sbjct: 752 RKLVKALEEVMVKYDGTVRNSLGD-IVQFLYG 782
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 189/694 (27%), Positives = 304/694 (43%), Gaps = 76/694 (10%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
R L + EV + K I E K+ + Y D I+ LPVPP + DG
Sbjct: 203 RRLLTPLEVYTVFKHISSEDMAKMGLNEEYARPDWMIITVLPVPPPSVRPSISVDGTCRG 262
Query: 168 SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRG 218
DL+ + + + R + G P E E LQ V Y++ ++
Sbjct: 263 EDDLTHKLSDIIKANANVRRYEQEGAPMHVVSEYEQL-LQFHVATYMDNDIAGQPQALQK 321
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
T + + + AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 322 TGRPLKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVP 371
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLR 331
IA+ +T+ E V +NI+ LQELV N D LR + G L+
Sbjct: 372 RSIARILTYPETVTPYNIHKLQELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIPLQ 431
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G V R I DGD V NR P+ HK S+ V V T +IN + P +ADFDGD +
Sbjct: 432 YGWRVERHITDGDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRINLSVTPPYNADFDGDEM 491
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQS +AE++E+ V KQ++S + + + D L +K + ++ FL K
Sbjct: 492 NLHVPQSEETRAEIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQVM 551
Query: 451 QLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR------------Y 495
+ ++ +P PA+ K + A WT QIL V+P G + D
Sbjct: 552 NILLWVPEWDGNMPPPAIIKPK--AMWTGKQILSMVIPKGINFIRDDEKQTPMTPDDTGM 609
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+++ E++ G D+ T+ + +V +I EKGPE FF+ +Q ++ L +GFS+
Sbjct: 610 MLENGEIIYGIVDKKTVGASQGGLVHTIMREKGPEVCRVFFNGIQMVVNYWLLHNGFSIG 669
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVDLQIE----------------- 596
+ D + +I I + + + + QN LQ+E
Sbjct: 670 IGDTIADANTMRDITNTIAEAKAKVQEIILDAQQNR---LQVEPGMTLRESFESKVSRAL 726
Query: 597 NHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK S+ + ++ + S + + Q + +G Q+ + GK
Sbjct: 727 NQARDTAGRSAQMSLKDSNNVKQMVTAGSKGSFINISQMSACVGQQIVE-GKRIPYGFKY 785
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G I+ + GL P E H+++ RE ++ ++ +E G
Sbjct: 786 RTLPHFTKD-----DYSPESGGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 840
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++ YDGTVRN + IIQ Y
Sbjct: 841 IQRRLVKALEDVMVKYDGTVRNSLGD-IIQLVYG 873
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISDCSI-------SHASQ---LANPFLGLPLEFG 55
SS +L Q+ ++FG+ + +EI S++ H + L +P LG
Sbjct: 10 SSAVLR-QVEEVQFGILSPEEIRAMSVAKIEYPEIMDESGHRPRIGGLLDPRLGTIDRNF 68
Query: 56 KCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
KC++CG S +C GHFG+IEL P++H + ++K
Sbjct: 69 KCQTCGESM-AECPGHFGHIELAKPVFHIGFLMKIK 103
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 179/695 (25%), Positives = 302/695 (43%), Gaps = 70/695 (10%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST 166
++ L +V LK+IP+ L F + +++ + P P IS DG +
Sbjct: 87 EKRLYPASDVYNTLKKIPDSDLALLGLSEEFARPDWMILTVLPVPPPPVRPSISADGGTV 146
Query: 167 MSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGT 219
S D L +LK + + R G+P E E LQ V Y++ +
Sbjct: 147 RSEDDLTYKLGDILKASINVRRCEEEGSPAHVISEFEQL-LQFHVATYMDNDIAGIPQAL 205
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R V A + K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 206 QKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLMLDEVGVPR 258
Query: 280 EIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPG 333
+A +T+ ERV +NI +LQ LV N D LR + T L+ G
Sbjct: 259 SMAMNLTYPERVTPYNIEWLQMLVRNGPREYPGARYVVRDSGERIDLRYNKRADTSLQYG 318
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
+V R + +GD V NR P+ HK S+ + V + T ++N + P +ADFDGD +++
Sbjct: 319 WIVERHLKNGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNM 378
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AE+ ++ V +Q++S + + D L + K+ + FLD F Q +
Sbjct: 379 HIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKITLRDNFLDWNFVQNI 438
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------------SC 491
++ +P P + K + WT QIL +P G + +
Sbjct: 439 LLWVPEWDGQVPVPTILKPK--PLWTGKQILSLCIPSGINVFRAPDKDKRTNRVPANPAN 496
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D I+ E+L G ++ T+ + ++ F EKGPE + F SLQ ++ L +G
Sbjct: 497 DDGICIENGEILYGVVEKKTVGASQAGLIHITFREKGPEITRDLFTSLQKVVNFWLLHNG 556
Query: 552 FSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQNEL-VDLQIENHI-RH 601
FS+ + D K + I I Q + Y + + + + E+H+ R
Sbjct: 557 FSIGIGDTIADKDTMSKITIHIETAKNNVLQLIQKAQYDGLRAEPGMTIRESFESHVNRE 616
Query: 602 VKMLVAKF-------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ M K + + + ++ + S + + Q +G +G Q S GK
Sbjct: 617 LNMARDKTGKDAQDSLKNDNNVKQMVVAGSKGSFINISQMSGCVG-QQSVEGKRIPFGFK 675
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 676 HRTLPHFNKD-----DYCAESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 730
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ + D+ +CYDGTVRN + I+QF Y
Sbjct: 731 YIQRRLVKAMEDIAVCYDGTVRNSLGD-IVQFAYG 764
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 192/722 (26%), Positives = 319/722 (44%), Gaps = 71/722 (9%)
Query: 82 YHPSHISELKLTMYA-FQLQIKND-GVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
Y I + L +YA F+ +D G R + +V ++LK I ++ + + F
Sbjct: 96 YKQPLIRKDGLKLYAQFRANAGDDNGGEGRQQLTAAKVLQILKNISDQDIRDMGLSEEFA 155
Query: 140 QDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
+ + I LPVPP + DG S DL+ + + + R G P
Sbjct: 156 RPEWMITTVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVV 215
Query: 199 QEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFI 252
QE E LQ + Y++ + G ++ + S P + +A L+ ++R +
Sbjct: 216 QEFEQL-LQFHIATYMDNDIAGQPQALQK-------SGRPLKSIRARLKGKEGRLRGNLM 267
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC---- 308
K FS+R+VITGD ++++GVP IA+ +T+ E V +NI+ LQ LV N
Sbjct: 268 GKRVDFSARTVITGDPNLNLDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPLEHPG 327
Query: 309 --LTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
D LR + G L+ G V R I D D V NR P+ HK S+ V
Sbjct: 328 AKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMGHRVK 387
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N + P +ADFDGD ++L PQSL +AEV E+ V KQ++S + +
Sbjct: 388 VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVM 447
Query: 426 QLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D L + K + F+ K + M+ S +P PA+ K + WT QI+
Sbjct: 448 GIVQDTLCGIRKFTLRDCFMTKDLVMNIVMWVPSWDGYIPPPAILKPK--PMWTGKQIVS 505
Query: 482 SVLPPGFD----------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIF 524
V+P G + S GD R +I+ E++ G + T+ + ++ +I
Sbjct: 506 MVIPKGINCQTFHSTHPDGESTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIM 565
Query: 525 FEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHR 583
E GPE F Q ++ L +GFS+ + D K ++ I I QA +
Sbjct: 566 NELGPEAAKNFLGGTQQVVNYWLLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQEVI 625
Query: 584 MSTQNELVDL---------------QIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSA 627
++ Q + +++ Q N R +A+ LK + + ++ S S +
Sbjct: 626 ITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGSKGS 685
Query: 628 VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGL 687
+ Q + +G Q + GK HF + D + P ++ G ++ + GL
Sbjct: 686 FINISQMSACVG-QQNVEGKRIPYGFKFRTLPHFSK----DDHSPESR-GFVENSYLRGL 739
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P E H++ RE ++ ++ +E G + + L+ L DV++ YDGTVRN + II+F
Sbjct: 740 TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IIEFC 798
Query: 748 YA 749
Y
Sbjct: 799 YG 800
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 175/638 (27%), Positives = 289/638 (45%), Gaps = 69/638 (10%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 264 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 322
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 323 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 375
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 376 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 435
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R ++DGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 436 AQISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNAD 495
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 496 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 555
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 556 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 613
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 614 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 673
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 674 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 731
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 732 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 790
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 791 GFKYRTLPHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTA 845
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 846 ETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 882
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 17 IRFGLATQKEICTASIS----------DCSISHASQLANPFLGLPLEFGKCESCGTSEP- 65
I+FG+ + +EI S++ + + L +P LG KC++C S+P
Sbjct: 19 IQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDRQFKCKTC--SQPM 76
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 77 SECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|219662982|gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 190/700 (27%), Positives = 306/700 (43%), Gaps = 95/700 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGV--ST 166
+++ S +V MLK+ E K+ + ++ L LPV PNC V +I G+
Sbjct: 203 KIILSPYQVFYMLKKSDPELIKQFVSR----RELLFLSCLPVTPNCHRVVEIGYGLPDGR 258
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDV 226
++ D K+++ I R P+F + V KSS+
Sbjct: 259 LTFDDRTKAYKRMVDVSRRIDDYRQH-PHFSVLASSLVSSR--------VSECLKSSKLY 309
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ ++ WL + + + K S RS++ GD ++ EIG+P +++ +
Sbjct: 310 SKKADGETSTDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLV 366
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP------GQVVHRRI 340
E V+ +N N C + +R K FLR G + +R +
Sbjct: 367 VSEHVSSYNFQS-----TNLKCNLHLLAKQELFIRRNGK-LMFLRKADQLEIGDIAYRPL 420
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTV-KINPLICGPLSADFDGDCIHLFYPQSL 399
DGD + INRPP+ H+HSL ALS + H+V INPL C P + DFDGDC+H + PQS+
Sbjct: 421 QDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSI 480
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS 458
++ E+ EL S+ QLL+ +G + L D+L + ++ FL K+ QQL M LS
Sbjct: 481 RSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLS 540
Query: 459 -PLPRPALSKARC--SARWTALQILQSVLPPGFD-SCGDRYLIKKSEVLKGDFDRDTIPS 514
P PA+ K+ + WT Q+ +LP G + SC I SEVL + +
Sbjct: 541 VSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQN 600
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL------------- 561
+ + + +F + G + L+F S Q +L E L G SVSL D +
Sbjct: 601 NTSGLFSVMFKQYGC-KALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEG 659
Query: 562 SKAALWNIQKEIQALYSLL----YHRMSTQNELVD--------------------LQIEN 597
K AL+ ++ + LL + +E D + ++
Sbjct: 660 VKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRSSIMAFKD 719
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKFY------- 649
R + +V + + +++ +I++ S ++ K QQ +GLQL + + F
Sbjct: 720 VFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSC 779
Query: 650 -----SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
K+L + S ER+ +L Y +IK F GL+P E + H+IS R
Sbjct: 780 ISWNGQKSLNYEAESTSERVGGQNL------YAVIKNSFIEGLNPLECLLHAISGRANFF 833
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
S PGTL + LM LRD+ + YDGTVR+ I+
Sbjct: 834 --SENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIV 871
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG 70
E + I+F L T ++ +S SI S + +P LGLP +CE+CG+ C+G
Sbjct: 9 EAILNAIKFDLMTSTDM--EKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDG 66
Query: 71 HFGYIELPIPIYHPSHISEL 90
HFG +L +++P I ++
Sbjct: 67 HFGVTKLAATVHNPYFIDDV 86
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 166/635 (26%), Positives = 282/635 (44%), Gaps = 62/635 (9%)
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+ GV DL+ + + + + RS + G P E E LQ V Y++
Sbjct: 264 VDGGVRRSEDDLTYKLAEIIRASGNVRRSEQEGAPPHIVSEYE-QLLQYHVATYMDNDIA 322
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
+ KS R + A + K ++R + K FS+R+VITGD +++
Sbjct: 323 GVPQAMQKSGRPIKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLD 375
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGH 327
++GVP IA +T+ ERV +NI YL ELV D L+ +
Sbjct: 376 QVGVPRSIAMTLTYPERVTRYNIQYLTELVRRGPQEYPGARYVIRDTGERIDLKYNKRSD 435
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
+ L+ G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFD
Sbjct: 436 SLLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFD 495
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD ++L PQS +AE+ ++ V +Q++S + + D L + K + F+D
Sbjct: 496 GDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFVDW 555
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SC 491
Q L ++ +P P + K + WT Q+L +P G +
Sbjct: 556 IQVQNLLLWLPGWDGIVPTPTILKPK--PLWTGKQLLSMCIPRGINVLRLPESRSHNPPA 613
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D +I+ E++ G D+ T+ + +V +F EKGPE + F LQ ++ LF +G
Sbjct: 614 DDGMMIENGEIIFGVVDKKTVGATQGGLVHVVFREKGPEICRDLFSGLQMIVNFWLFHNG 673
Query: 552 FSVSLEDF--------SLSKAALWNIQKEIQALYSLLYHRMS-----TQNELVDLQIENH 598
FS+ + D +S+A L QK + + R+ T E + + H
Sbjct: 674 FSIGIGDTIADNQTMQGVSEAILSAKQKVQKLIEDASNDRLKAEPGMTIRESFESHVNMH 733
Query: 599 IRHVKMLVAKF----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + K + S+ + ++ + S + + Q + +G Q S GK
Sbjct: 734 LNKARDTAGKMAQESLKDSNNVKQMVVAGSKGSFINIAQMSVAVG-QQSVEGKRIPFGFR 792
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + D P ++ G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 793 HRSLPHFTK----DDFSPESR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAIKTAETG 847
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++CYDGTVRN + I+QF Y
Sbjct: 848 YIQRRLVKALEDVMVCYDGTVRNSLGD-ILQFTYG 881
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCGTS 63
QI ++FG+ + EI S++ LA+P +G KC +CG
Sbjct: 15 QIKEVQFGILSPDEIKAYSVAKIEFPEVMDEQQKQKEGGLADPRMGTIDRNFKCATCGEG 74
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H + ++K
Sbjct: 75 M-AECPGHFGHIELARPVFHIGFLGKVK 101
>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 996
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 152/543 (27%), Positives = 248/543 (45%), Gaps = 48/543 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 250 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 309
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 310 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 369
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 370 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 429
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL+K + ++ LP+PA+ K R +W
Sbjct: 430 QRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPR--PKW 487
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+PPG + S G D + E++ G FD+ ++ + I+ I
Sbjct: 488 TGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFDKKSVGATSGGIIHII 547
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + +
Sbjct: 548 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEI 607
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKS---------------STLGYLIDSKSDS 626
R +T+N+L L N + V+K + K+ + + S S
Sbjct: 608 TRSATENDLEPLPGMNVRETFESKVSKALNKARDDAGTVTEEGLKDLNNATQMARSGSKG 667
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q S GK HF + +Y G ++ + G
Sbjct: 668 STINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRG 721
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 722 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQF 780
Query: 747 DYA 749
Y
Sbjct: 781 VYG 783
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 193 bits (491), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 173/688 (25%), Positives = 304/688 (44%), Gaps = 74/688 (10%)
Query: 114 CCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSS--- 169
EV +LK+I + L F Q D +L LPVPP P + GV+ S
Sbjct: 11 ASEVHTILKKISADDVNTLGLSDDFAQPDWMVLTVLPVPP-----PQVRPGVTEFGSGMG 65
Query: 170 --DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRD 225
DL+ + + + R + G P + ++ LQ Y++ + G +S +
Sbjct: 66 QDDLTYKLADIIKASSNLRRMEQEGAPAHILNDF-ADLLQYHTATYMDNDIAGLPQSLQS 124
Query: 226 VDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEI 281
S P +A L+ ++R + K FS+R+VITGD ++++GVP I
Sbjct: 125 -------SGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSI 177
Query: 282 AQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
A+ +T+ ERV +N YL +LV N D L+ +G L+ G +
Sbjct: 178 ARNLTYPERVTPYNRAYLSDLVRNGPNEYPGARYVIRDTGERIDLKYNRRGDIALQAGWI 237
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ A V + D T ++N + P +ADFDGD ++L
Sbjct: 238 VERHLRDGDYVLFNRQPSLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 297
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ ++ V +Q++S + + D L + K + +D Q + M
Sbjct: 298 PQSEEARAELAQIAWVPRQIVSPQANKPVMGIVQDTLCGVRKFTLRDCLMDYDQVQNILM 357
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-------SCGDRYL------IK 498
+ +P+P + K + W+ Q+L +P G + + + ++ I+
Sbjct: 358 WLPGWDGIVPQPCILKPK--PYWSGKQLLSLCIPKGINVFLGDAKAASNNFVKDDGVHIE 415
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G ++ + S ++ IF E+GP +FF +Q ++ L +GFS+ + D
Sbjct: 416 NGEIMYGVINKKVVGSTAGGLIHIIFRERGPVVCRDFFSGVQRVVNYWLLHNGFSIGIGD 475
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVKML 605
KA NI + I S + + + T E + + + +
Sbjct: 476 TVPDKATTVNINETIAKAKSDVMNLIQAARHDWLKADPGMTLRESFEANVNRILNKARDD 535
Query: 606 VAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
V ++ + + ++ + S + + Q + +G Q S GK HF
Sbjct: 536 VGSHAEQNLPDWNNVKQMVIAGSKGSFINISQMSACVG-QQSVEGKRIPFGFRHRSLPHF 594
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL +E H+++ RE ++ ++ +E G + + L+
Sbjct: 595 TKD-----DYTPESRGFVENSYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 649
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV ICYDGTVRN +N++I+F Y
Sbjct: 650 KALEDVTICYDGTVRN-STNNVIEFAYG 676
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 193 bits (490), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 221/866 (25%), Positives = 362/866 (41%), Gaps = 163/866 (18%)
Query: 14 IVGIRFGLATQKEICTASISDC---------SISHASQLANPFLGLPLEFG-KCESCGTS 63
+ GIRFG+ + I S+++ + + + +P LG LE G +C++CG +
Sbjct: 7 VAGIRFGILSPDLIRKMSVAEIISPDTYDEDGLPIPTSVMDPRLGT-LEPGQRCKTCGNT 65
Query: 64 EPGKCEGHFGYIELPIPI--------------------------------YHPSHISELK 91
G C GHFG IELP+P+ YH + + L+
Sbjct: 66 YLG-CPGHFGRIELPVPVIHVGFAKTIYELLKSTCRSCGRILLPEDDCKKYH-AELERLR 123
Query: 92 LTMYAFQ---LQIKNDGVAQRLLSSCCE----------------------------VKEM 120
F+ +IK + ++ C E V+
Sbjct: 124 ANNLPFKNLIYKIKQKAMNTQVCPHCGEKQLKLELEKPTSFSEMSESGSTKLNPSTVRAR 183
Query: 121 LKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
L+RIP+ L PQ +L LPVPP + P I+ S D L
Sbjct: 184 LERIPD---ADLVLLDINPQTSRPEWMVLTVLPVPPVYVR-PSITLESGYRSEDDLTHKL 239
Query: 177 KKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG-V 232
+L+ + +R + R+G+P+ +E+ S+ LQ V Y E G + R G +
Sbjct: 240 VDILRVTQRLRENIRAGSPSPVIEEL-SDLLQYHVTTYFNNEAVGVVPAKH----RSGRI 294
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
+ K + R K FS+R+VI+ D R+NE+GVP EIA ++T ERV
Sbjct: 295 LKTLAQRLKGKEGRFRLNLSGKRVDFSARTVISPDPNIRINEVGVPLEIAMQLTVAERVT 354
Query: 293 VHNINYLQELVDNKLCLTYSDG--SSSYSLREGSKG------------HTFLRPGQVVHR 338
N+ ++ LV N SD + Y +R K T L PG VV R
Sbjct: 355 PWNLEKMRTLVRNG-----SDKYPGARYIIRPDGKRVRLKFVANLEELATALEPGYVVER 409
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+ DGD V NR P+ H+ S+ A V V T+++NP +C P +ADFDGD ++L PQS
Sbjct: 410 HLQDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTLRLNPAVCTPYNADFDGDEMNLHVPQS 469
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALS 458
A+ E EL VE ++S G + + D L SL ++ + K +LAM +
Sbjct: 470 EEAQTEARELLVVENNIISPRYGAPIIGVIRDFLTSLYLLTRDE--TKLTKSELAMLLAA 527
Query: 459 -----PLPRPALSKARCSARWTALQILQSVLPPGFDSC------GDRYLIKKSEVLKGDF 507
P+P PA+ WT Q+ +LP F+ ++K +++ G
Sbjct: 528 IKYRGPIPPPAVKDP--EPMWTGKQVFSLLLPKDFNHVTKSSFTNTEVVVKNGQLISGVI 585
Query: 508 DRDTIP-SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL 566
D+ ++ N I+ + + G + +F D++ L + GFS +++D +
Sbjct: 586 DKGSVGVEKANSILHRLARDYGSDVARQFLDNVVRLANTFIELKGFSFAVDDLYVPD--- 642
Query: 567 WNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKM---LVAKFILKSSTLGYLIDSK 623
I +IQ ++ ++ E L + V++ + A+ ++ L L +++
Sbjct: 643 -QIHSDIQQIFK------KSETEFSKLLAQYQTGEVEIPPGMTAEQAFEADVLKILSEAR 695
Query: 624 SDSA----VSKVVQQ-AGFLGLQLSDRGKFYS----KTLVEDIASHFERI---------- 664
DSA ++V Q + F+ + RG + +V + ER+
Sbjct: 696 -DSAGKLIRARVSQNSSAFIMAKTGARGTMLNLDQMIAVVGQQSVRRERVHRGYRKRVLS 754
Query: 665 -YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+ D P A+ G + F GLDP E H++ R+ +V ++ + G + + L+
Sbjct: 755 FFKQDDLSPRAR-GFVYNSFVSGLDPLEFFFHAVGGRDGLVDTAVRTQQSGYMQRRLINA 813
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L + I YDGTVR IIQF Y
Sbjct: 814 LEALYIDYDGTVRTADEGRIIQFAYG 839
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 192 bits (489), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 153/550 (27%), Positives = 247/550 (44%), Gaps = 55/550 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IAQ +T+ E V +NIN L +LVDN
Sbjct: 304 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDN 363
Query: 306 --------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
+ + S +G G FL+ G V R +MDGD + NR P+ HK
Sbjct: 364 GPDIHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNRQPSLHKE 423
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ A V V T ++N + P +ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 424 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCLVPLNIVS 483
Query: 418 SHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSAR 473
+ + D L + K+ + FL K + ++ LP+PA+ K R R
Sbjct: 484 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPEWDGVLPQPAILKPR--PR 541
Query: 474 WTALQILQSVLPPG----------------FDSCGDR-YLIKKSEVLKGDFDRDTIPSVI 516
WT QI+ VLP G F D L+ E++ G F + T+ +
Sbjct: 542 WTGKQIISMVLPSGLNLLRVDRDRVPLSEKFSPLTDSGLLVHGGELMYGMFSKKTVGATG 601
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL 576
IV +I+ E GP+ + FF+ Q ++ L +GFS+ + D A + I++ ++
Sbjct: 602 GGIVHTIYNEYGPDVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIR 661
Query: 577 YSLL--YHRMSTQNEL---------------VDLQIENHIRHVKMLVAKFILKSSTLGYL 619
+ +T+N L V + N K + + +
Sbjct: 662 KEEVDSITASATENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQM 721
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
S S + + Q +G Q S GK HF + +Y G +
Sbjct: 722 ARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFV 775
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN
Sbjct: 776 ENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSL 835
Query: 740 SNSIIQFDYA 749
+ +IQF Y
Sbjct: 836 GD-VIQFLYG 844
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 252/537 (46%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-- 303
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV
Sbjct: 343 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKT 402
Query: 304 --DNKLCLTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
++ Y D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 403 GPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 462
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 463 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 522
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K R +W
Sbjct: 523 QRNGPLMGIVQDTLCGIYKICRRDVFLSKEMVMNILLWVPDWDGVIPQPAILKPR--PKW 580
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ ++PPG + S G D + E++ G F++ ++ + N +V I
Sbjct: 581 TGKQIISLIIPPGLNLFRSSSEGPSPLNDDGLQVSGGELMYGLFNKKSVGATSNGVVHII 640
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGP+ + FF+ Q ++ L +GFS+ + D + + I+ + + +
Sbjct: 641 FNEKGPDAAMSFFNGCQTVVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEI 700
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V K + K+ + KS ++ Q A G G
Sbjct: 701 TRSATENELEPLPGMNVRETFESKVQKALNKARDDAGTVTEKSLKDINNATQMARSGSKG 760
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 761 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 820
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 821 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 876
Score = 45.1 bits (105), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ ++ A+Q LA+P LG KC +C +
Sbjct: 19 IQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSIDRAIKCGTCDENM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL +P++H +++ K
Sbjct: 78 ECPGHFGHIELAVPVFHVGFMTKKK 102
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 189/733 (25%), Positives = 320/733 (43%), Gaps = 81/733 (11%)
Query: 113 SCCEVKEMLKRIPE-ETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+ +V ++LK+I + + R Y + I+ +PVPP C+ P I + S D
Sbjct: 124 TVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVR-PSIQMDATRHSEDD 182
Query: 172 SIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L +LK +RS G P E E+ LQ V ++ ++ G ++ +
Sbjct: 183 LTYKLNDILKANARVRSCEVEGAPQHIIDEFETL-LQFHVATFINNDISGIPQALQK--- 238
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 239 ----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKN 294
Query: 285 ITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVH 337
+T+ E V +NI+ LQELV N D L+ +G L+ G V
Sbjct: 295 LTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVE 354
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R +MD D V NR P+ HK S+ V V D T ++N + P +ADFDGD ++L PQ
Sbjct: 355 RSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQ 414
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL 457
S +AEV EL V KQ++S + + D L ++ +MF K D Q L M L
Sbjct: 415 SEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAM-IMFTKR--DNLMKQDLVMDLL 471
Query: 458 SPLPR-----PALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RY 495
+P P + W+ Q+ ++P G + S GD R
Sbjct: 472 LKVPGWDGMIPPPCILKPQPLWSGKQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRV 531
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+++ +L G + T+ +V +V +IF E GPE F Q ++ + L +GFS+
Sbjct: 532 VVENGVLLSGIVCKQTVGAVRGGLVHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIG 591
Query: 556 LEDFSLSKAALWN--------------------IQKEIQALYSLLYHRMSTQNELVDLQI 595
+ D +++ A+ + I+ +++ L + Y N ++ ++
Sbjct: 592 IGD-TITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLPGMTYKETFENN--INFEL 648
Query: 596 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
+ V + + + ++ S S + V Q +G Q + GK +
Sbjct: 649 NKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQQ-NVEGKRIPFGFRD 707
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G
Sbjct: 708 RTLPHFTKD-----DYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTAETGY 762
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSN 775
+ + L+ L DV++ YDGTVRN +II+F Y + + SL + V + A
Sbjct: 763 IQRRLVKALEDVMVHYDGTVRNSLG-AIIEFAYGHDGADA-SLLENQKVASVRCSDARFE 820
Query: 776 PAYKA-VLDSSPS 787
YK V+D + S
Sbjct: 821 KMYKVDVMDPAKS 833
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 185/718 (25%), Positives = 314/718 (43%), Gaps = 80/718 (11%)
Query: 89 ELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPE-ETRKKLAGKGYFPQDGYILEY 147
+L T L D +++L+ +V ++LK+I + + R Y + I+
Sbjct: 120 KLTATFKGVALSGGEDTEGKQVLT-VLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISV 178
Query: 148 LPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDL 206
+PVPP C+ P I + S D L +LK +RS G P E E+ L
Sbjct: 179 MPVPPMCVR-PSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDEFETL-L 236
Query: 207 QLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSS 260
Q V ++ ++ G ++ + S P + +A L+ ++R + K FS+
Sbjct: 237 QFHVATFINNDISGIPQALQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSA 289
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDG 314
R+VI+GD ++++GVP IA+ +T+ E V +NI+ LQELV N D
Sbjct: 290 RTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIRDS 349
Query: 315 SSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
L+ +G L+ G V R +MD D V NR P+ HK S+ V V D T +
Sbjct: 350 GERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFR 409
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
+N + P +ADFDGD ++L PQS +AEV EL V KQ++S + + D L
Sbjct: 410 LNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLC 469
Query: 434 SLKVMFKKYFLDKAFTQQLAMFALSPLPR-----PALSKARCSARWTALQILQSVLPPGF 488
++ +MF K D Q L M L +P P + W+ Q+ ++P G
Sbjct: 470 AM-IMFTKR--DNLMKQDLVMDLLLKVPGWDGMIPPPCILKPQPLWSGKQLYSLLIPDGI 526
Query: 489 D----------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
+ S GD R +++ +L G + T+ +V +V +IF E GPE
Sbjct: 527 NCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGLVHTIFNELGPEA 586
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWN--------------------IQK 571
F Q ++ + L +GFS+ + D +++ A+ + I+
Sbjct: 587 TKVFLGGTQRVINQWLVTNGFSIGIGD-TITDASTMDSVSKIISEAHRIVDQIIKDCIED 645
Query: 572 EIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKV 631
+++ L + Y N ++ ++ + V + + + ++ S S + V
Sbjct: 646 KMKGLPGMTYKETFENN--INFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINV 703
Query: 632 VQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
Q +G Q + GK + HF + +Y G ++ + GL P E
Sbjct: 704 SQMTAAVGQQ-NVEGKRIPFGFRDRTLPHFTKD-----DYTPHSRGFVENSYLSGLTPQE 757
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE ++ ++ +E G + + L+ L DV++ YDGTVRN +II+F Y
Sbjct: 758 FYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLG-AIIEFAYG 814
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 173/625 (27%), Positives = 278/625 (44%), Gaps = 85/625 (13%)
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTAKSSRDVDARFGVS 233
V + + G P E E LQ V Y+E ++ + + + + AR
Sbjct: 8 VHLKKCEAEGAPGHVVSEYEQL-LQFHVATYMENSIPGLPKAIQKSGRPLKSISARL--- 63
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
K ++R + K FS+R+VIT D ++++GVP IA+ +T+ E V
Sbjct: 64 -------KGKEGRLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTP 116
Query: 294 HNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVF 347
+NI YLQ+LV+N D + LR K L+PG +V R I DGD V
Sbjct: 117 YNIEYLQKLVNNGPTEHPGARYVVRDDGNRIDLR--FKTDVVLQPGYLVERHINDGDVVL 174
Query: 348 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
NR P+ HK S+ + V T ++N + P +ADFDGD ++L PQS+ AKAE++E
Sbjct: 175 FNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVE 234
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRP 463
L V Q++S + + + D L + K ++ FL+KA + M+ S LPRP
Sbjct: 235 LALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGKLPRP 294
Query: 464 ALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RYLIKKSEVLKGD 506
+ K W+ QI ++P G + S GD + LI+ E++ G
Sbjct: 295 CILKP--VPLWSGKQIFSMIIPKGVNCVTFHSTHPDNEYSDISPGDTKVLIEDGELISGI 352
Query: 507 FDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL 566
+ T+ ++ I+ E G E +FF+ +Q ++ L +GFS+ + D + +
Sbjct: 353 VCKKTVGPAAGGLIHVIYNEHGSEVAKQFFNGVQTVVNNWLLINGFSIGIGDTIADRQTM 412
Query: 567 WNIQKEI------------QALYSLLY-HRMSTQNELVDLQIE---NHIRHVKMLVAKFI 610
NI + I QA LL T E + ++ N R A+
Sbjct: 413 KNINETIAIAKEEVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLNKARDSAGKSAQTS 472
Query: 611 LK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERI 664
LK + + ++ + S + + Q +G Q + GK F +TL HF +
Sbjct: 473 LKEQNNVKQMVVAGSKGSYINISQMTACVG-QQNVEGKRIPFGFRYRTL-----PHFTK- 525
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ L
Sbjct: 526 ----GDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRKLVKAL 581
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+I YDGTVRN IIQF Y
Sbjct: 582 EDVMIKYDGTVRNALG-EIIQFKYG 605
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 304/688 (44%), Gaps = 70/688 (10%)
Query: 113 SCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSD 170
S E+ +L++IP E + Y + IL +PVPP + P IS DG + S D
Sbjct: 219 SPGEIYNVLRKIPAEDLHVMGLNIDYARPEWMILTVMPVPPAAVR-PSISIDGGAMRSED 277
Query: 171 LSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL--EVRG----TAKSS 223
L ++LK +R + G P E + + LQ V Y+ E+ G KS
Sbjct: 278 DLTYKLAQILKTSATVRRLEAEGVPPSVVDE-QFDLLQFHVATYMDNEIAGLPQDMQKSG 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + A + K +MR + K FS+R+VITGD +++++GVP IA
Sbjct: 337 RPIKAI-------RARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAM 389
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYS-------DGSSSYSLREGSKGHTF-LRPGQV 335
+T+ ERV +NI YLQ LV+N TY D L+ G L+ G +
Sbjct: 390 TLTYPERVTPYNIVYLQTLVNNGPS-TYPGARYYVKDTGERIDLKYRKSGEPISLQFGWI 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ V + + T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ ++ V +Q++S + + D L + K + + D Q + +
Sbjct: 509 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDNYCDWKQVQNILL 568
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-------------FDSCGDRYLIK 498
+ +P PA+ K + WT Q++ +P G D + LI
Sbjct: 569 WLPGWDGTIPTPAILKPK--PMWTGKQLMSMTIPKGINITFKNNEKPSPIDITDENVLID 626
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G ++ S N +V IF E G +FF + Q ++ L GFSV + D
Sbjct: 627 NGEIIHGTIVKNMAGSANNGLVHVIFRELGHVAARDFFSACQMMVNFWLLHYGFSVGIGD 686
Query: 559 FSLSKAALWNIQKEI----QALYSLL----YHRMS-----TQNELVDLQIENHIRHVKML 605
+ A + I + +A+ L+ +RM T E ++ I + +
Sbjct: 687 TIVDTATMAGITNRMVEAKEAVQRLIAEAEANRMKPKPGMTIRETLEAGIATELNKARDW 746
Query: 606 VAKF----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
K + + + + ++ S + + + Q G +G Q + GK + HF
Sbjct: 747 TGKTAQDNLKEDNNVKQMVVSGAKGSFINISQMTGVVGQQFVE-GKRINFGFKHRTLPHF 805
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
P D +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 806 ----PKD-DYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLV 860
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D+ + YDGTVRN + ++QF Y
Sbjct: 861 KAMEDLKVAYDGTVRN-STGDVVQFLYG 887
>gi|342183052|emb|CCC92532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1754
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 188/679 (27%), Positives = 307/679 (45%), Gaps = 69/679 (10%)
Query: 116 EVKEMLKRIPEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
+V+++L R+ +E + + P+D +L LPVPP + P IS G +L+
Sbjct: 216 KVRQVLDRVSDEDARLMGFDPLRCHPRD-LVLTVLPVPPPQVR-PAISFGGLKSDDELTH 273
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
++ V + ++ + S + + LQ V Y T V+ S
Sbjct: 274 QIMAIVKRNNQLRKDKESDVQ--AAIDRSRALLQEHVATYFNNSSTYYKPTKVND----S 327
Query: 234 QDPNSTT---KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ S T K ++R + K FS+R+VITGD V+E+GVPF +A +TF ER
Sbjct: 328 KKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPER 387
Query: 291 VNVHNINYLQELVDNKLC-----LTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDG 343
VN N L E V ++ + + +G+ + LR+ SK L G +V R +++G
Sbjct: 388 VNTVNKKRLTEFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVING 445
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KA
Sbjct: 446 DVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKA 505
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFA-LSPLPR 462
E++E+ V K +S + +L + S K FLDK F Q +A++ L LP
Sbjct: 506 ELIEMMMVPKNFVSPTSQRRAWELCR-TVCSEATGDKDTFLDKYFVQSVALWLDLWQLPI 564
Query: 463 PALSKARCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDT 511
PA+ K R WT Q+ +LP P F +I++ E+L G +
Sbjct: 565 PAVLKPR--PLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGI 622
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALW---- 567
+ + ++ IF E+G +EV F + +Q + L GFSV ++D L
Sbjct: 623 VGAAPGSLIHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMNE 682
Query: 568 -------NIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFIL----KSS 614
N++K A + +R + L + + + + + AK L +++
Sbjct: 683 VLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTN 742
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLN 670
+ +I++ S + Q A F+G Q + F +TL HF M +
Sbjct: 743 SFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDD 792
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 793 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 852
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN + +IQF Y
Sbjct: 853 YDGTVRN-ANEELIQFMYG 870
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
Length = 1663
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 156/553 (28%), Positives = 257/553 (46%), Gaps = 62/553 (11%)
Query: 241 KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
K ++R + K FS+R+VITGD V+E+GVPF +A +TF ERVNV N L
Sbjct: 315 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLT 374
Query: 301 ELVDNKLCLTYSDGSSSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINR 350
E V TY S++Y +R + L G VV R ++DGD V NR
Sbjct: 375 EFVQRT---TYP--SANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNR 429
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
PT H+ S+ V V + +T ++N P +ADFDGD ++L PQSL KAE++E+
Sbjct: 430 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 489
Query: 411 VEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-LSPLPRPALSKA 468
V K +S + + + D++L S K+ K FLDK F + ++ L LP P + K
Sbjct: 490 VPKNFVSPNKSAPCMGIVQDSVLGSYKLTEKDTFLDKYFIAERPLWLDLWQLPIPTILKP 549
Query: 469 RCSARWTALQILQSVLP-----------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVIN 517
R WT QI +LP P F + +I++ ++L G + + +
Sbjct: 550 R--PLWTGKQIFSLILPEVNHPASPHDKPPFPHNDSKIMIQRGQLLGGAITKGVVGAAPG 607
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------Q 570
++ IF E+G +EV +F + +Q + + FSV ++D L + +
Sbjct: 608 SLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTR 667
Query: 571 KEIQALYSLLYHRMSTQNELVDL------QIENHIRHVKMLVAKFIL----KSSTLGYLI 620
+ ++ + + + T+ + L + + + + AK L ++++ +I
Sbjct: 668 QSVEKIGAAANNGKLTRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMI 727
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKY 676
++ S + + Q A F+G Q + F +TL HF M +Y
Sbjct: 728 EAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTL-----PHF-----MLDDYGETSR 777
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G+ + GL P+E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVR
Sbjct: 778 GMATRGYVEGLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVR 837
Query: 737 NVCSNSIIQFDYA 749
N + +IQ Y
Sbjct: 838 N-ANQELIQLAYG 849
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 187/694 (26%), Positives = 307/694 (44%), Gaps = 81/694 (11%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
+V ++LK+I K + G F + D I+ LPVPP + DG S DL+
Sbjct: 149 ADVYQILKKISPPDLKDMGLNGEFARPDWMIITILPVPPPPVRPSIQMDGTSRGEDDLTH 208
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
+ + + R G P E E+ LQ Y+ E+ G ++ +
Sbjct: 209 KLADILKANQNVKRYEAEGHPAHVVNEFEAL-LQFHCATYMDNEMAGQPQALQK------ 261
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + +A L+ ++R + K FS+R+VITGD V+++GVP IAQ +TF
Sbjct: 262 -SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTF 320
Query: 288 EERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLRE--GSKGHTFLRPGQVVHRR 339
E V NI+ LQ LV+N + D L+ G G L+ G V R
Sbjct: 321 PELVTPFNIDLLQGLVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERH 380
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
+ DGD + NR P+ HK S+ V V T ++N + P +ADFDGD +++ PQS+
Sbjct: 381 LNDGDIIIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSV 440
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL- 457
KAE+ E+ V KQ++S + + + D L +++ K+ FL K + M+ L
Sbjct: 441 ETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMWVLD 500
Query: 458 --SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRY------------------LI 497
LP P + K WT QIL ++P G +S R+ LI
Sbjct: 501 WDGRLPIPCILKP--IPLWTGKQILSMIIPKGINSDNLRHSGHPENEHSDISPGDTKVLI 558
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ E+L G + T+ + +V I E GPE+ +F + Q ++ + L +GFS+ +
Sbjct: 559 EDGELLCGIVCKKTVGATHQGLVHVIMNEMGPEKAKDFLNGCQAVVNQWLLQNGFSIGIG 618
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVKM 604
D + NI I S + + T E + ++ + +
Sbjct: 619 DTIADDETMKNITNTISNAKSRVAEIIGEAQQDKLECAPGMTIRETFEHKVNKELNTARD 678
Query: 605 LVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVE 655
K +S + + ++ + S + + Q +G Q + GK F +TL
Sbjct: 679 AAGKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVG-QQNVEGKRIPFGFKFRTL-- 735
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + D + P ++ G ++ C+ GL P E H++ RE ++ ++ +E G
Sbjct: 736 ---PHFTK----DDHSPESR-GFVENCYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 787
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 788 IQRRLVKALEDVMVKYDGTVRNSLGD-IVQFCYG 820
>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
Length = 1403
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 201/727 (27%), Positives = 311/727 (42%), Gaps = 92/727 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V + KRI +E + L G P G Y+ +Y+ VPP C+ DG S DL
Sbjct: 218 KVLNLFKRISDEDCELL---GLRPAHGRPEEYVWQYISVPPVCIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E + + LQL+V Y+ E+ G R
Sbjct: 274 TVKLTEIVFTNALIKQGLAKGAPTAQFME-QWDFLQLSVAMYINSELPGVPSQMGQKPIR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
G Q K + R K FS R+VI+ D R++E+ VP +++ +T+ E
Sbjct: 333 -GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVSKILTYPE 387
Query: 290 RVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRR 339
RV HNI+ L++ V N S+G Y L+ G++ LR G VV R
Sbjct: 388 RVTAHNIDMLKKAVRNGCDVHPGANYVTAGSNGFKKY-LKFGNRNAIADGLRIGDVVERH 446
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I+DGD V NR P+ HK S+ V V + ++N +CGP +ADFDGD ++L PQ+
Sbjct: 447 IIDGDVVLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTE 506
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFAL 457
A+ E LEL SV+ L++ NG + D + + ++ ++ +F + FTQ + F
Sbjct: 507 EARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQICSYFGD 566
Query: 458 S----PLPRPALSKARCSARWTALQILQSVLPPGFDS-------------------CGDR 494
+ +P P + K WT QI ++ P S C R
Sbjct: 567 ANMQIDIPPPTIWKP--VRLWTGKQIFNVLMRPNKSSNVMVNVESKCNKQEKPDPKCYPR 624
Query: 495 Y-------------LIKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQ 540
+I SE++ G D+ T+ S + V I + GP E + L
Sbjct: 625 MNAAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGIIMRDYGPHEAAAAMNRLA 684
Query: 541 PLLMENLFADGFSVSLEDF-----------SLSKAALWNIQKEI-QALYSLLYHRMST-Q 587
L L GFS+ + D L + A Q I +A LL ++ Q
Sbjct: 685 KLCARYLANYGFSLGINDVIPGPKLANEKDKLVETAYAECQDLIMRAKKGLLENKPGCDQ 744
Query: 588 NELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLS 643
+ ++ I + V+ V + LK S LI + S +V V Q +G Q+
Sbjct: 745 EQTLEAMISGVLSKVRDKVGEICLKELSRHNAPLIMATCGSKGSVINVAQMVACVGQQII 804
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL P E + H+IS RE +
Sbjct: 805 -AGHRVPDGFQDRSLPHF----PKKSREPPSK-GFVRNSFYTGLSPTEFLFHAISGREGL 858
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGE 763
V ++ +E G + + LM L D+V YD +VRN ++QF Y + L +
Sbjct: 859 VDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVG-GVVQFRYGDDGLDPACLEGDAQ 917
Query: 764 PVGVLAA 770
PV L A
Sbjct: 918 PVEYLRA 924
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 182/686 (26%), Positives = 303/686 (44%), Gaps = 68/686 (9%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSDL 171
S EV + K+IP+ + F + +++ + P P I+ DG +T S D
Sbjct: 213 SAAEVYTLFKKIPDSDITLMGLSAEFARPDWMIITVLPVPPPPVRPSIAVDGGATRSEDD 272
Query: 172 SIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDA 228
L +LK +R S G P E E +Q V Y++ + G ++ +
Sbjct: 273 LTYKLADILKYTATLRRFESEGAPAHIISENEQL-VQFHVATYMDNDIAGIPQAMQK--- 328
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P + +A L+ ++R + K FS+R+VITGD ++E+GVPF IA+
Sbjct: 329 ----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPFSIART 384
Query: 285 ITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHR 338
+T+ ERV +NI YLQELV N D LR + TFL+ G +V R
Sbjct: 385 LTYPERVTPYNILYLQELVRNGPNEYPGARYVVRDTGERIDLRYNRRADTFLQYGWIVER 444
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+ DGD V NR P+ HK S+ V + T ++N + P +ADFDGD ++L PQS
Sbjct: 445 HLKDGDFVLFNRQPSLHKMSMMCHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 504
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL 457
+AE+ ++ SV +Q++S + + + DAL + K+ + FLD + M+
Sbjct: 505 EETRAEMSQIASVTRQIVSPQANSPVMGIVQDALCGVRKLTLRDTFLDSKQVANILMWVP 564
Query: 458 ---SPLPRPALSKARCSARWTALQILQSVLPPGF--------------DSCGDRYLIKKS 500
+P PA+ K + WT QIL +P G D G I+
Sbjct: 565 GWDGIVPTPAIMKPK--PLWTGKQILSLCIPRGINVFRSNEQKSSAPVDDAG--VCIEDG 620
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
++ G D+ T+ +V IF EKG +F LQ ++ + GFS+ + D
Sbjct: 621 NIMYGAIDKSTVGKSQGGLVHVIFREKGHIICKDFLSGLQVVVNYWMLHHGFSIGIGDTI 680
Query: 561 LSKAALWNIQKEI----QALYSLLYHRMSTQNEL-------------VDLQIENHIRHVK 603
K+ + I + I + ++ S Q E V++++ V
Sbjct: 681 ADKSTMAYITERIGDAKDKVKGIIQSAESNQLEAQAGMTIRESFEASVNMELNQARDQVG 740
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
+ + + ++ + S + + Q + +G Q S GK HF +
Sbjct: 741 KSAQHSLKDDNNVKQMVVAGSKGSFINISQMSACVG-QQSVEGKRIPFGFKYRTLPHFTK 799
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
D P ++ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 800 ----DDFGPESR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYVQRRLVKA 854
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGTVRN + I+QF Y
Sbjct: 855 LEDIMVHYDGTVRNSLGD-ILQFAYG 879
Score = 43.5 bits (101), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASIS--------DCSISHASQ--LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ + S++ D S Q L +P +G KC++CG
Sbjct: 20 VQFGLMSPEEMKSLSVAQIIHPEVIDESTGRPRQGGLMDPRMGTIDRNFKCQTCGEGM-A 78
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P +H ++++K
Sbjct: 79 ECPGHFGHIELARPAFHIGFLTKIK 103
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 184/685 (26%), Positives = 302/685 (44%), Gaps = 68/685 (9%)
Query: 116 EVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V ++LKRIP+E + L Y + IL PVPP + SDG + DL+
Sbjct: 127 QVLQILKRIPDEDCEALGLNPEYARPEWMILTVFPVPPPPVRPSIRSDGAARGEDDLTFK 186
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
+ V I + R G+ + +E E LQ + E+ G ++++
Sbjct: 187 LCDIVKANAAIYQKIRDGSTGHQLKEHEEL-LQFHCATLVDNEISGMPRAAQK------- 238
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S P +A L+ ++R + K FS+R+VITGD ++++GVP IA +T+
Sbjct: 239 SGRPIKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYP 298
Query: 289 ERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIM 341
E V HNI LQE+V + DGS G++G L+PG VV R +
Sbjct: 299 EMVTRHNIRRLQEMVHRGAEEHPGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLS 358
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
D D + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS+ A
Sbjct: 359 DNDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEA 418
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL--- 457
+AE+ +L V Q++S + + + D L + K + F+DKA L M+
Sbjct: 419 RAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVMNLLMWVPGWD 478
Query: 458 SPLPRPALSKARCSARWTALQILQSVLP-----------PGFD----SCGD-RYLIKKSE 501
+P PA+ K + WT QIL ++P P + S GD R +++ E
Sbjct: 479 GNVPVPAILKPK--PLWTGKQILSLIIPKVNCITLHSTHPDGETTDISPGDTRVIVEDGE 536
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-- 559
+L G + T+ + +V + E GPE + Q ++ L +GFS+ + D
Sbjct: 537 LLAGIVCKKTVGTSAGGLVHVSWMEHGPEAAKALLNGCQTIVNHWLLHNGFSIGIGDTIA 596
Query: 560 ---------SLSKAALWNIQKEIQALY--SLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
L A + I+A +L T E + Q+ +
Sbjct: 597 DDDTMQRINELIGEARAGVNAVIEAAQKDTLKVETGLTLRETFEAQVNRLLNGAVNAAGG 656
Query: 609 FILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
KS + + +++ + S + + Q + +G Q + GK HF
Sbjct: 657 AAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVG-QQNVEGKRIPFGFQYRSLPHF--- 712
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ +Y G ++ + GL+P E H++ RE ++ ++ +E G + + L+ L
Sbjct: 713 --VKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 770
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGTVRN N IIQF Y
Sbjct: 771 EDIMVKYDGTVRNAQGN-IIQFAYG 794
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 251/537 (46%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-- 303
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV
Sbjct: 343 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKT 402
Query: 304 --DNKLCLTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
++ Y D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 403 GPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 462
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 463 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 522
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K R +W
Sbjct: 523 QRNGPLMGIVQDTLCGIYKICRRDVFLTKELVMNILLWVPDWDGVIPQPAILKPR--PKW 580
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ ++PPG + S G D + E++ G F++ ++ + N +V I
Sbjct: 581 TGKQIISLIIPPGLNLFRSSSEGPSPLNDDGLQVSGGELMYGLFNKKSVGATSNGVVHII 640
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGP+ + FF+ Q ++ L +GFS+ + D + + I+ + + +
Sbjct: 641 FNEKGPDAAMSFFNGCQTVVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEI 700
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V K + K+ + KS + Q A G G
Sbjct: 701 TRSATENELEPLPGMNVRETFESKVQKALNKARDDAGTVTEKSLKDTNNATQMARSGSKG 760
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 761 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 820
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 821 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 876
Score = 47.0 bits (110), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ ++ A+Q LA+P LG KC +C +
Sbjct: 19 IQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSIDRAIKCGTCDENM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL +P++H ++++K
Sbjct: 78 ECPGHFGHIELAVPVFHVGFMTKIK 102
>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 1016
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 151/537 (28%), Positives = 249/537 (46%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L + V N
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIEKLHQXVKN 329
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K R +W
Sbjct: 450 QRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPR--PKW 507
Query: 475 TALQILQSVLPPG-----FDSCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+PPG F S G D ++ E++ G F + ++ + ++ I
Sbjct: 508 TGKQIISLVVPPGLNLTRFSSEGLCPINDDGLMVSGGELMYGLFSKKSVGAASGGVIHII 567
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE FF+ Q ++ L +GFS+ + D + + I+ + + +
Sbjct: 568 FNEKGPEAATNFFNGAQTVVNHWLLHNGFSIGIGDTIPDRNTIKQIEDAVSKQKADVAEI 627
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + +S ++ +Q A G G
Sbjct: 628 TRSATENELEPLPGVNVRETFESKVSKALNKARDDAGTVTEESLKDLNNAIQMARSGSKG 687
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 688 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 747
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 748 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 803
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 204/844 (24%), Positives = 355/844 (42%), Gaps = 128/844 (15%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESC- 60
++ ++FG+ + EI S+ I HA L++P +G KCE+C
Sbjct: 14 AKVEAVQFGVLSPDEIRQMSV--VHIEHAETMEKGKPKPGGLSDPRMGTIDRKIKCETCM 71
Query: 61 -GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTM------------------YAFQLQI 101
G +E C GHFG++EL P++H I + M + L+I
Sbjct: 72 AGMAE---CPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQALKI 128
Query: 102 KNDGVAQRLLSSCCEVKEML----------KRIPEETRKKLAGKGY----FPQDGY--IL 145
+N + + C+ +++ ++ ++ KK G G DG +
Sbjct: 129 RNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGMKMVA 188
Query: 146 EY-LPVPPN--CLSVPDISDGVSTMSS---DLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
EY P N +P+ D +S+ DL+ + + + R R+G P
Sbjct: 189 EYKAPKKKNDDQEQLPEPVDRKQILSAERDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 248
Query: 200 EVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
E + LQ + Y + R T +S R + + S KA ++R +
Sbjct: 249 EF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMG 300
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI L+ELV+
Sbjct: 301 KRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 360
Query: 314 GSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
+ Y +RE + L G V R + DGD V NR P+ HK S+
Sbjct: 361 TGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 420
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ + T ++N + P +ADFDGD +++ PQS +AEVLEL V K ++S +
Sbjct: 421 IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 480
Query: 424 NLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQI 479
+ + D LL + + K+ ++K + M+ +P PA+ K R WT Q+
Sbjct: 481 VMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPR--PIWTGKQV 538
Query: 480 LQSVLPPG----------------FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTS 522
++P F + GD + I+K E+L G + T+ + ++
Sbjct: 539 FNLIIPKQINLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHV 598
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--------Q 574
I+ E GP+ +F Q L+ L +GFS+ + D A + NI + I +
Sbjct: 599 IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKK 658
Query: 575 ALYSLLYHRMSTQNELVDLQ-IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQ 633
+ +++ + ++ EN + V + A+ + SS L +S + A++
Sbjct: 659 LIKQFRDNQLEAEAGRTTMESFENRVNEV-LNKARDVAGSSAEKSLSESNNLKAMATAGS 717
Query: 634 QAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ F+ + Q + GK HF + +Y G ++ +
Sbjct: 718 KGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHFTKN-----DYGPESRGFVENSYLR 772
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQ
Sbjct: 773 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQ 831
Query: 746 FDYA 749
F Y
Sbjct: 832 FLYG 835
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 179/687 (26%), Positives = 304/687 (44%), Gaps = 74/687 (10%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P IS DG+ DL+ + + + + G P+ E+E
Sbjct: 155 ILTVLPVPPMAVR-PSISMDGMGRGEDDLTHKLSDIIKANTNLKKHEVDGAPSHIIAELE 213
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
N LQ V Y+ E G ++S+ S P + +A L+ ++R + K
Sbjct: 214 -NLLQWHVCTYMNNETAGIPQASQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRV 265
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------T 310
FS+R+VITGD ++++GVP IA+ +TF E V +N+ L ++V N +
Sbjct: 266 DFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVHPGAKHV 325
Query: 311 YSDGSSSYSLREGSKG-HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
D LR +G L+ G V R ++D D + NR P+ HK S+ V +
Sbjct: 326 IRDTGERIDLRYSKRGGDIHLQYGYKVERHLLDDDYIIFNRQPSLHKMSMMGHRVKIMPY 385
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N + P +ADFDGD ++L PQS +AE+ +L V KQ++S + +
Sbjct: 386 STFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEIQQLCMVPKQIVSPQKNAPVMGIVQ 445
Query: 430 DALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP 485
D L ++ K+ FL + L M+ + +P PA+ K WTA Q++ ++P
Sbjct: 446 DTLCGIRKFTKRDTFLHRDLLMNLLMWVPNWDGIIPMPAILKP--IPLWTAKQVMSIIIP 503
Query: 486 P----GFDSC-----------GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 529
GF S GD + +I+ E+L G + T+ S + ++ + E GP
Sbjct: 504 QINMIGFHSTHPDDENTDISPGDTKVIIENGELLAGILCKKTVGSSASGVIHTSMNEHGP 563
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQN 588
E +FF+ Q ++ L +GFS+ + D K + I I A + + QN
Sbjct: 564 EITKDFFNGTQAVVNYWLLQNGFSIGIGDTIADKNTMKAINDTIAHAKKEVNKIILKAQN 623
Query: 589 E----------------LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVV 632
LV++++ + K + + + + ++ + S + +
Sbjct: 624 NELECLPGMTIRGSFESLVNMELNRARDNAGKSAQKSLKEFNNVKQMVVAGSKGSFLNIS 683
Query: 633 QQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEE 692
Q +G Q + GK + HF + D + P ++ G ++ + GL P E
Sbjct: 684 QMTACVG-QQNVEGKRIPFGFKDRTLPHFTK----DDHSPESR-GFVENSYLRGLTPQEF 737
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
H++ RE ++ ++ +E G + + L+ L D + YDGTVRN + IIQF Y +
Sbjct: 738 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDATVKYDGTVRNSLGD-IIQFSYGEDG 796
Query: 753 RKSHSLFPAGEPVGVLAATAMSNPAYK 779
L P + MS+ A+K
Sbjct: 797 MDGARLEKQKLP-----SMTMSDAAFK 818
>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
Length = 995
Score = 189 bits (480), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 162/587 (27%), Positives = 269/587 (45%), Gaps = 40/587 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 263 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 322
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DG+ + NR P HK S
Sbjct: 323 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNRQPXXHKES 382
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 383 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 442
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 443 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKP--LAMW 500
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G + T+ + ++ +
Sbjct: 501 TGKQILSLVIPTGLNLLRGNEEGFSPLNDDGLLISSGELMYGLLAKKTVGASGGGVIHIV 560
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLY 581
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + Q L
Sbjct: 561 FNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEI 620
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 621 TRSATENELESLPGMNVRETFESKVSKALNKARDDAGAVTEKSLKDLNNATQMARSGSKG 680
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 681 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 740
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y +
Sbjct: 741 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 799
Query: 753 RKSHSLFPAGEPVGVLA-ATAMSNPAYKA-VLDSSPSSNNSWELMKE 797
+ P + V +LA +T ++ ++DS P ++ S E +++
Sbjct: 800 LDGGHIEP--QRVDILACSTKQFERKFRVDLMDSKPETSISPEFLEQ 844
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 189 bits (480), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 169/635 (26%), Positives = 279/635 (43%), Gaps = 64/635 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P E E LQ V Y++ +
Sbjct: 186 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIA 244
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 245 GQPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 297
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 298 EVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 357
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD + NR P+ HK S+ V V T ++N + GP +ADF
Sbjct: 358 EISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTGPYNADF 417
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS +AEV L V ++S + + D L + M ++ FL
Sbjct: 418 DGDEMNLHVPQSEETRAEVSGLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLS 477
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SC 491
K + ++ +P+PA+ K R WT QIL V+P G +
Sbjct: 478 KEQVMNILLWVPDWDGVIPQPAIFKPR--PMWTGKQILSLVIPAGLNLLRGSNEGFTSLT 535
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D L+ E++ G F++ ++ + ++ I+ EKGPE + FF+ Q ++ L +G
Sbjct: 536 DDGLLVSGGELMYGLFNKKSVGATGGGVIHIIYNEKGPEVAMNFFNGAQTVVNYWLLHNG 595
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKF 609
FS+ + D + + I+ + + R +T+NEL L N + V+K
Sbjct: 596 FSIGIGDTIPDRNTIQQIEDAVNRQKDEVGEITRNATENELESLPGMNVRETFESEVSKA 655
Query: 610 ILKS---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ K+ + + S S + + Q +G Q S GK
Sbjct: 656 LNKARDDAGTVTENSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFK 714
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 715 YRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 769
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 770 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 803
>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
Length = 868
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 167/609 (27%), Positives = 278/609 (45%), Gaps = 71/609 (11%)
Query: 191 SGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE--- 245
+G+P QE ES LQ V Y++ + G S P + +A L+
Sbjct: 95 NGSPQHVIQESESL-LQFHVATYMDNDIAGXXXXXX-------XSGRPLKSIRARLKGKE 146
Query: 246 -KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI LQELV
Sbjct: 147 GRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVR 206
Query: 305 NK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
N D LR + G LR G V R I DGD V NR P+ HK
Sbjct: 207 NGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKM 266
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ + V T ++N + P +ADFDGD +++ PQS +AE+ E+ V KQ++S
Sbjct: 267 SMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVS 326
Query: 418 SHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSAR 473
+ + + D L + K + FL + + ++ LP P + K +
Sbjct: 327 PQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVL-- 384
Query: 474 WTALQILQSVLPPGFDSCGDR------------YLIKKSEVLKGDFDRDTIPSVINEIVT 521
WT QIL ++P G + D LI+ E++ G D+ T+ + +V
Sbjct: 385 WTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVH 444
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-------- 573
+I+ EKGPE FF+ +Q ++ L +GFS+ + D + + + +
Sbjct: 445 TIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVA 504
Query: 574 QALYSLLYHRMSTQN--------ELVDLQIENHIRHVKMLVAKFILK-SSTLGYLIDSKS 624
+ + ++R+ + E +I N R A+ LK S+ + ++ + S
Sbjct: 505 ECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGS 564
Query: 625 DSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ + Q + +G Q+ + + F +TL HF P D + P ++ G I+
Sbjct: 565 KGSFINISQMSACVGQQIVEGKRIPFGFKYRTL-----PHF----PKDDDSPESR-GFIE 614
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H+++ RE ++ ++ +E G + + L+ + DV++ YDGTVRN
Sbjct: 615 NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMG 674
Query: 741 NSIIQFDYA 749
+ IIQF Y
Sbjct: 675 D-IIQFAYG 682
>gi|2088657|gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 125/180 (69%), Gaps = 5/180 (2%)
Query: 988 MVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKA 1047
MV+KGVLKEH+ILLAN+MTC+G ++GFNSGGYKAL+RSLN++ PFTEATL PRKCFEKA
Sbjct: 1 MVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKA 60
Query: 1048 AEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSST 1107
AEK HTD+LS+VV +CSWGK V VGTGS+F+LLW + + + DVY FL MV S+T
Sbjct: 61 AEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVISTT 120
Query: 1108 GIEELDTGCLGEEVDGLEDEF-DWSLSPEHNLCSDKPVFEDLVEDQSWL-ENKQENANWD 1165
+ D E+E +W+ SPE + +P FED + Q+ E K ANW+
Sbjct: 121 NADAF---VSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADFQNLHDEGKPSGANWE 177
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 169/631 (26%), Positives = 280/631 (44%), Gaps = 69/631 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + R + G P +E E+ LQ V Y+ + + KS+
Sbjct: 278 DLTFKLAEIIRANQNLQRCEQEGAPEHVVREFEAL-LQYHVATYMDNDIAGQPKAMTKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VI GD + E+G P A
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAM 389
Query: 284 RITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKGHTFLRPGQVVH 337
+T+ E V +NI +LQ+LV+N + D LR K + L G V
Sbjct: 390 ILTYPEVVTPYNIEFLQKLVNNGPTIYPGARYIVRDNGERIDLRMARKTNANLLYGWKVE 449
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R ++DGD + NR P+ HK S+ V V T ++N + P +ADFDGD +++ PQ
Sbjct: 450 RHLLDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQ 509
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFA 456
S A+AE+L+L V ++S + + D+L + K+ + FL K L ++
Sbjct: 510 SEEARAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWV 569
Query: 457 L---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY--------L 496
+P+PA+ K R RWT QI+ VLP G + +++ L
Sbjct: 570 PDWDGVIPQPAIIKPR--PRWTGKQIISMVLPSGLNLLRVDKDKAPLSEKFSPLTDGGIL 627
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
+ +++ G F + T+ + +V +IF E GPE + FF+ Q ++ L +GFS+ +
Sbjct: 628 VHGGQLMYGMFSKKTVGASGGGVVHTIFNEYGPEAAVSFFNGAQRVVNYWLLHNGFSIGI 687
Query: 557 EDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHV-------KMLVA 607
D K + I+ ++A + + + +T+N L L N IR + A
Sbjct: 688 GDTIPDKKTIERIEDAVRAGKAEVEEIVQSATENTLEALPGMN-IRETFESKVSRALNNA 746
Query: 608 KFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
+ S T L D S S + + Q +G Q S GK
Sbjct: 747 REAAGSETEKSLKDLNNAIQMARSGSKGSAINISQMTAIVG-QQSVEGKRIPFGFKYRTL 805
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 806 PHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 860
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L ++++ YDGTVRN + IIQF Y
Sbjct: 861 KLVKALEELMVKYDGTVRNSLGD-IIQFLYG 890
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 172/660 (26%), Positives = 287/660 (43%), Gaps = 75/660 (11%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
I+ LPVPP + P IS DG DL+ ++ + + + R G P E E
Sbjct: 246 IITTLPVPPMPVR-PSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVNEFE 304
Query: 203 SNDLQLAVGQYLE---------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
N LQ V Y+ ++ + + + + AR K ++R +
Sbjct: 305 -NLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARL----------KGKEGRLRGNLMG 353
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------L 307
K FS+R+VITGD ++++GVP IA+ +TF E V +NI+ LQ++V N
Sbjct: 354 KRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGA 413
Query: 308 CLTYSDGSSSYSLREGSKG-HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR +G L+ G V R ++D D + NR P+ HK S+ V +
Sbjct: 414 KYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKI 473
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD +++ PQS +AE+ L V Q++S +
Sbjct: 474 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMG 533
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ D L ++ K+ FL + L M+ +P PA+ K WTA QI+
Sbjct: 534 IVQDTLCGIRKFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILKP--IPLWTAKQIISL 591
Query: 483 VLPP----GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFE 526
+LP GF S GD + LI+ E+L G + T+ S N I+ + E
Sbjct: 592 ILPKINLVGFHAAHPDNEKTDISPGDTKVLIEDGELLMGILCKRTVGSSANGIIHTSMNE 651
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---QALYSLLYHR 583
GP+ + FF+ Q ++ L +GFS+ + D + + I I + + + +
Sbjct: 652 LGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTMETINDTIAHAKREVNKIIQK 711
Query: 584 MSTQN--------------ELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
T LV+ ++ + K + + + + ++ S S +
Sbjct: 712 AQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKGSFI 771
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+ Q +G Q + GK + HF R D + P ++ G ++ + GL P
Sbjct: 772 NISQMTACVG-QQNVEGKRIPFGFKDRTLPHFTR----DDHSPESR-GFVENSYLRGLTP 825
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 826 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNALGD-IVQFTYG 884
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLAN----------PFLGLPLEFGKCESCGTSEPG 66
++FG+ + +E T ++S I H + N P LG KC++CG +
Sbjct: 23 VQFGILSPEE--TKAMSVAKIEHFELMDNDRPKLGGLLDPRLGTIDRNFKCQTCGENMT- 79
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H + +K
Sbjct: 80 DCPGHFGHIELAKPVFHQGFLKIIK 104
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 193/690 (27%), Positives = 304/690 (44%), Gaps = 87/690 (12%)
Query: 119 EMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSS-------- 169
++ + I +E +KL Y + I+ LPVPP P + V +S
Sbjct: 142 DIFRNISQEDIRKLGLSNDYARPEWMIITVLPVPP-----PQVRPSVVVSNSGAGPRGED 196
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + V + + R G+P E ES LQ V Y++ + G ++ +
Sbjct: 197 DLTYKLGDIVRANMNVRRCESEGSPQHVKTEFESL-LQFHVATYMDNNIAGQPQALQK-- 253
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP I +
Sbjct: 254 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPVTICK 308
Query: 284 RITFEERVNVHNINYLQELVDNKLCL-------TYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E VN NI YL LV+ L D + ++ LR K L G V
Sbjct: 309 TLTYVETVNPRNIAYLSRLVETGPNLHPGANYVINMDRTKTWDLRR-VKNPPRLEYGWQV 367
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I DGD + NR P+ HK S+ V V T ++N + GP +ADFDGD ++L P
Sbjct: 368 ERHIDDGDYIIFNRQPSLHKESMMGHRVKVMPWSTFRLNLSVTGPYNADFDGDEMNLHVP 427
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
Q+ A +AEV EL V ++S + + D L + K+ + FL TQ+ AM
Sbjct: 428 QTEATRAEVKELCMVPHNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL----TQEQAMN 483
Query: 456 AL-------SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLI 497
L +P+PAL K + WT QI+ LP G + D +
Sbjct: 484 VLMWVPEWDGIMPQPALLKPK--PMWTGKQIISLALPAGLNLLRGSEEGMSPVNDDGLFV 541
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G F + ++ + I+ IF EKGP+ + FF+ Q ++ L +GFS+ +
Sbjct: 542 NNGELMFGLFSKKSVGASGGGIIHVIFNEKGPDAAVRFFNGAQQIVNYWLLQNGFSIGIG 601
Query: 558 DFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFI 610
D + + IQ E++A+ + +T NEL L N + V+K +
Sbjct: 602 DTTPDPTTVQQIQGAIDEQKAEVEAITT-----EATNNELEPLPGMNIRETFESKVSKAL 656
Query: 611 LKSSTLGYLIDSKSDSAVSKVVQ--QAGFLG--LQLSDRGKFYSKTLVEDIASHFE---R 663
+ KS ++ VQ +AG G + +S + VE F R
Sbjct: 657 NSARDNAGSKTEKSLKDINNAVQMARAGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 716
Query: 664 IYP---MDLNYPTAKYGLIKGCFFH-GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
P D P A + + G F GL P E H+++ RE ++ ++ +E G + +
Sbjct: 717 TLPHFTKDDYSPEAPW--LCGKFLSXGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 774
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV+ YD TVRN + I+QF Y
Sbjct: 775 LVKALEDVMAKYDTTVRNSLGD-IVQFVYG 803
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 278/636 (43%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 276 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 335 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ LQ+LV N D LR + G L G V
Sbjct: 388 TLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+L+L V ++S + + D L + K+ + FL K L M+
Sbjct: 508 QSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMW 567
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY-------- 495
+P PA+ K R RWT QI+ LP G + + +++
Sbjct: 568 VPDWDGVIPPPAILKPR--PRWTGKQIISMALPSGLNLLRVDKDNSALSEKFAPLNDGGL 625
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E GP + FF+ Q ++ L +GFS+
Sbjct: 626 LIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPGTAVAFFNGAQAIVNYWLLHNGFSIG 685
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + I+ KE++ + + +T N L L N + V++
Sbjct: 686 IGDTIPDAVTIQRIENCVRERKKEVETITA-----SATDNTLEPLPGMNVRETFESKVSR 740
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 741 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 799
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 800 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 854
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 855 GYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 889
Score = 40.8 bits (94), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIK 102
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 172/660 (26%), Positives = 287/660 (43%), Gaps = 75/660 (11%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
I+ LPVPP + P IS DG DL+ ++ + + + R G P E E
Sbjct: 149 IITTLPVPPMPVR-PSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVNEFE 207
Query: 203 SNDLQLAVGQYLE---------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
N LQ V Y+ ++ + + + + AR K ++R +
Sbjct: 208 -NLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARL----------KGKEGRLRGNLMG 256
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------L 307
K FS+R+VITGD ++++GVP IA+ +TF E V +NI+ LQ++V N
Sbjct: 257 KRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGA 316
Query: 308 CLTYSDGSSSYSLREGSKG-HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR +G L+ G V R ++D D + NR P+ HK S+ V +
Sbjct: 317 KYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKI 376
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD +++ PQS +AE+ L V Q++S +
Sbjct: 377 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMG 436
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ D L ++ K+ FL + L M+ +P PA+ K WTA QI+
Sbjct: 437 IVQDTLCGIRKFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILKP--IPLWTAKQIISL 494
Query: 483 VLPP----GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFE 526
+LP GF S GD + LI+ E+L G + T+ S N I+ + E
Sbjct: 495 ILPKINLVGFHAAHPDNEKTDISPGDTKVLIEDGELLMGILCKRTVGSSANGIIHTSMNE 554
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---QALYSLLYHR 583
GP+ + FF+ Q ++ L +GFS+ + D + + I I + + + +
Sbjct: 555 LGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTMETINDTIAHAKREVNKIIQK 614
Query: 584 MSTQN--------------ELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
T LV+ ++ + K + + + + ++ S S +
Sbjct: 615 AQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKGSFI 674
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+ Q +G Q + GK + HF R D + P ++ G ++ + GL P
Sbjct: 675 NISQMTACVG-QQNVEGKRIPFGFKDRTLPHFTR----DDHSPESR-GFVENSYLRGLTP 728
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 729 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNALGD-IVQFTYG 787
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 278/636 (43%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 276 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 335 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ LQ+LV N D LR + G L G V
Sbjct: 388 TLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+L+L V ++S + + D L + K+ + FL K L M+
Sbjct: 508 QSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMW 567
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY-------- 495
+P PA+ K R RWT QI+ LP G + + +++
Sbjct: 568 VPDWDGVIPPPAILKPR--PRWTGKQIISMALPSGLNLLRVDKDNSALSEKFAPLNDGGL 625
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E GP + FF+ Q ++ L +GFS+
Sbjct: 626 LIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPGTAVAFFNGAQAIVNYWLLHNGFSIG 685
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + I+ KE++ + + +T N L L N + V++
Sbjct: 686 IGDTIPDAVTIQRIENCVRERKKEVETITA-----SATDNTLEPLPGMNVRETFESKVSR 740
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 741 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 799
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 800 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 854
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 855 GYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 889
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIK 102
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 180/696 (25%), Positives = 309/696 (44%), Gaps = 70/696 (10%)
Query: 104 DGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISD 162
D +R L + E+ + K I PE+ + + Y + I+ LPVPP + P I+
Sbjct: 195 DAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVR-PSIAM 253
Query: 163 GVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------E 215
+T D L +LK + + + G+P EVE LQ V Y+ +
Sbjct: 254 DETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVEQL-LQFHVATYMDNDIAGQ 312
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ KS R V A + K ++R + K FS+R+VI+GD ++++
Sbjct: 313 PQALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQV 365
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +++ E V +NI+ L E V N D LR + G
Sbjct: 366 GVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDI 425
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDG
Sbjct: 426 VLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDG 485
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKA 447
D ++L PQS +AE+ +L +V Q++S + + + D L ++ M + F++
Sbjct: 486 DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE-- 543
Query: 448 FTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG------------FDS 490
+ Q + M P +P+PA+ K + WT Q+L +P G
Sbjct: 544 YEQVMNMLFWVPSWDGVVPQPAILKPK--PLWTGKQLLSIAIPSGIHLQRTDGGNSLLSP 601
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ LI +V+ G D+ T+ S ++ ++ EKGP+ E F ++Q ++ L +
Sbjct: 602 KDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHN 661
Query: 551 GFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNELVD------------LQ 594
GFS+ + D + + I I + + ++Y + EL +
Sbjct: 662 GFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSR 721
Query: 595 IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
N R A+ LK + + ++ + S + + Q + +G Q+ + GK +
Sbjct: 722 TLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVE-GKRIAFGF 780
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 781 ADRSLPHFTK----DDFSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 835
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 836 GYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFLYG 870
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTAS--------ISDCSISHASQ--LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +EI S I D S + L +P LG KC++CG
Sbjct: 17 VQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSIDRNFKCQTCGEGM-A 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG++EL P++H I ++K
Sbjct: 76 ECPGHFGHMELAKPVFHIGFIPKIK 100
>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
B]
Length = 1403
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 196/727 (26%), Positives = 309/727 (42%), Gaps = 92/727 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ KRI +E + L G P+ G Y+ +Y+ VPP C+ DG S DL
Sbjct: 218 KVLDLFKRISDEDCELL---GLRPEYGRPEEYVWQYISVPPVCIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E + + LQL+V Y+ E+ G R
Sbjct: 274 TVKLTEIVFTNALIKQGLAKGAPTAQFME-QWDFLQLSVAMYINSELPGVPTQMGQRPIR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
G Q K + R K FS R+VI+ D R++E+ VP +A+ +T+ E
Sbjct: 333 -GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPE 387
Query: 290 RVNVHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHTF--LRPGQVVHRR 339
RV HNI L+ V N C + + G + + L+ G++ LR G +V R
Sbjct: 388 RVTAHNIEVLRRAVRNG-CDVHPGANYVTTGGTGFKKFLKFGNRAAIADGLRIGDIVERH 446
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I+DGD V NR P+ HK S+ V V T ++N +CGP +ADFDGD ++L PQ+
Sbjct: 447 IIDGDIVLFNRQPSLHKLSIMCHRVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTE 506
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMFAL 457
A+ E LEL SV+ L++ NG + D + + L ++F + FTQ + A
Sbjct: 507 EARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSQRDRFFDRRQFTQICSYLAD 566
Query: 458 SPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------CGDR-------YLI 497
+ L P P + K + WT QI ++ P S C Y +
Sbjct: 567 ADLKIDIPPPTIWKPQ--RLWTGKQIFNVLMRPNRSSKVLVNVESKCAKEEKPNVACYPM 624
Query: 498 KK----------------SEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQ 540
KK SE++ G D+ T+ S + I I + GP E + +
Sbjct: 625 KKPAPDLAPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRVA 684
Query: 541 PLLMENLFADGFSVSLEDF----SLSKAALWNIQKEIQALYSLLYHRMS---------TQ 587
+ L GFS+ + D LS+ + K A L+ Q
Sbjct: 685 KVCARWLANFGFSLGINDVIPGPQLSQQKEDMVMKAYNACDDLIMKAKKGLLENKPGCDQ 744
Query: 588 NELVDLQIENHIRHVKMLVAKFILKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ ++ I + + +V+ V +K + + S +V V Q +G Q+
Sbjct: 745 EQTLEAMISSILSNVRDQVGNICMKELSRHNAPLVMATCGSKGSVINVCQMVACVGQQII 804
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL P E + H+IS RE +
Sbjct: 805 -AGHRVPDGFQDRSLPHF----PKKSREPPSK-GFVRNSFYTGLSPTEFLFHAISGREGL 858
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGE 763
V ++ +E G + + LM L D+V YD +VRN ++QF Y + L +
Sbjct: 859 VDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVG-GVVQFRYGDDGLDPACLEGDAQ 917
Query: 764 PVGVLAA 770
PV L A
Sbjct: 918 PVEFLRA 924
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 171/629 (27%), Positives = 277/629 (44%), Gaps = 70/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 275 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 334 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + SDG+ L G V
Sbjct: 387 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FLDK L ++
Sbjct: 507 QSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFLDKNQVMNLMLW 566
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP--GFDSCGDR---------YLIKKSE 501
+ +P+PA+ K R RWT QI+ V+P + D+ LI+ E
Sbjct: 567 VPNWDGVIPQPAILKPR--PRWTGKQIISMVIPKEISLHAPEDKSDSPLKDAGLLIQAGE 624
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + I S ++ + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 625 LMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIP 684
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKM 604
K + +Q I Q M+T NEL V EN +
Sbjct: 685 DKQTIEKVQVHIDTQKAEVARLTAMATNNELEALPGMNVRATFENKVSMALNMARDQAGT 744
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
K + S+ + +S S + + Q +G Q+ + + F +TL H
Sbjct: 745 TTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PH 799
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 800 FTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRL 854
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+ YDGTVRN + IIQF Y
Sbjct: 855 VKALEDLNAQYDGTVRNSLGD-IIQFLYG 882
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI + S++ + L +P LG KC++C T G
Sbjct: 19 IQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDRQFKCKTC-TQAMG 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1439
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 182/677 (26%), Positives = 303/677 (44%), Gaps = 94/677 (13%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV- 201
++ +Y+P PPNC+ P +S ++ DL+ + V + + + R G P E
Sbjct: 265 FLWQYIPAPPNCIR-PSVSQDGASNEDDLTAKLGDIVQSNITLRNNLRKGAPVPTLMECW 323
Query: 202 ESNDLQLAV---GQYLEVRGTA-KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
+ LQ+A+ G ++G A K +R + +R Q + R K
Sbjct: 324 DYMTLQIAIYINGDVPGLKGEAGKPTRSLVSRLKGKQG----------RFRGNLSGKRVD 373
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LT 310
FS R+VI+ D R++E+ VP +A+ +T+ E V +N+ YLQ+LV N + +
Sbjct: 374 FSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPGAKKVI 433
Query: 311 YSDGSSSYSLREGSKG----HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D + SL+ +K L+ G +V R ++DGD NR P+ HK S+ + V V
Sbjct: 434 KKDSGLTISLKHSAKSLDTISKQLQIGDLVERHLVDGDIALYNRQPSLHKLSILSHFVKV 493
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N +C P +ADFDGD ++L PQ+ A++E +EL V+ L++ NG +
Sbjct: 494 RPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKNGEPIIG 553
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQIL 480
D + + V+ K F D+ Q+ ++ L P LP PA+ K + WT Q+
Sbjct: 554 AIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAILKPQMM--WTGKQVF 611
Query: 481 QSVLPPGFD---------SC----------------GDRYL-IKKSEVLKGDFDRDTIPS 514
++ P D +C D +L I+ SE++ G D+ TI S
Sbjct: 612 NILMRPNKDDPVKVNIDAACREFKAPKDGQPKDLDPNDGWLVIRNSEIMCGVMDKSTIGS 671
Query: 515 VINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ V I GP E + L L GFS+ + D S+ + + +
Sbjct: 672 GKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGITDVYPSERLVQTKNELV 731
Query: 574 QALYSLL-----------YHRMSTQNEL--VDLQIENHIRHVKMLVAKFILK--SSTLGY 618
+ Y+ ++ +EL ++ Q+ + V+ + +K S
Sbjct: 732 ERAYAACDEVIAQYKAGKLEKLPGCDELQTMESQVSGILSKVRQQAGEECIKQLSKYNAP 791
Query: 619 LIDSKSDSAVS--KVVQQAGFLGLQL--SDRGK--FYSKTLVEDIASHFERIYPMDLNYP 672
LI + S S S V Q +G Q+ S+R + F +TL HF P + +P
Sbjct: 792 LIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTL-----PHF----PKNARHP 842
Query: 673 TAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD 732
+K G ++ FF L P E H++S RE ++ ++ +E G + + LM L D+ YD
Sbjct: 843 PSK-GFVRNSFFSSLSPTEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYD 901
Query: 733 GTVRNVCSNSIIQFDYA 749
GT+R S SI+QF Y
Sbjct: 902 GTIR-TSSASIVQFSYG 917
>gi|288931146|ref|YP_003435206.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
gi|288893394|gb|ADC64931.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
Length = 870
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 181/696 (26%), Positives = 309/696 (44%), Gaps = 91/696 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+E L++IP+E L G P+ + ++L LPVPP + I + DL
Sbjct: 174 DVRERLEKIPDED---LPAFGIDPKACRPEWFVLTVLPVPPVTVRPSIILETGQRSEDDL 230
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ ++ + + + +G P +++ LQ V YL EV G +
Sbjct: 231 THKLVDIIRINQRFLENKEAGAPQLILEDL-WELLQYHVTTYLDNEVSGIPPARHR---- 285
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FS+R+VI+ D +NE+GVP IA+ +
Sbjct: 286 ---SGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPKVIAEEL 342
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSKGHTF----------LRPGQ 334
T V +NI +E V L ++Y +R +G + L PG
Sbjct: 343 TVPIYVTPNNIEEAREYV-----LRTEHPKANYVIRPDGRRIRVIDANREELAEKLEPGW 397
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R++ DGD V NR P+ H+ S+ A V V T ++NP +C P +ADFDGD ++L
Sbjct: 398 IVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTFRLNPAVCPPYNADFDGDEMNLH 457
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
PQS+ A+AE L +V++ +LS G + D + L ++ + +K F+++ M
Sbjct: 458 VPQSIEAQAEAKILMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRG---EKLFSKEEVM 514
Query: 455 FALSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSC------GDRY-L 496
+ P+ + + + ++WT QI +LP G + C D Y +
Sbjct: 515 ELIRPINVEKIPEPKYDSKWTGKQIFSMILPDITLEFKAEICQGCEKCEGENCPHDAYVV 574
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I+ E++KG D + + I+ I + G EE +F D++ L + + GF+V +
Sbjct: 575 IRNGELIKGTIDEKAVGAFKGIIIDEIVRKYGTEEAKKFIDNMTQLAIRAIMFFGFTVGI 634
Query: 557 EDFSLSKAALWNI-------QKEIQALYS---------LLYHRMSTQNELVDLQIENHIR 600
+D + K A I +K+++ L + + E+ +Q+ R
Sbjct: 635 DDEDIPKEAREQIEEIMNEAEKKVEELIEAYKAGNLEPMPGRSLEETLEMKIMQVLGKAR 694
Query: 601 -HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ-----LSDRGKFYS-KTL 653
+ ++++ + + S + ++ + Q A +G Q RG YS +TL
Sbjct: 695 DQAGKIASQYLGMDNAAVIMAVSGARGSMLNLTQMAACIGQQSVRGERIRRGYAYSNRTL 754
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF+ P DL G ++ + GL P E H++ RE +V ++ S+
Sbjct: 755 -----PHFK---PGDLG--ARARGFVRSSYKSGLSPVEFFFHAVGGREGLVDTAVRTSQS 804
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G L + L+ L+D+ + YDGTVR S I+QF Y
Sbjct: 805 GYLQRRLINALQDLKVEYDGTVREQTSGIIVQFKYG 840
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 13 QIVGIRFGLATQKEICTASI---------SDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I I+F + + +EI S+ SD S L +P LG+ +C +CG
Sbjct: 5 RISAIKFEVLSPQEIRRMSVAKIFTPETYSDDGYPIESGLMDPRLGVVDPGLRCRTCG-G 63
Query: 64 EPGKCEGHFGYIELPIPIYH 83
+ G+C GHFG+IEL P+ H
Sbjct: 64 KAGECPGHFGHIELAAPVIH 83
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 166/629 (26%), Positives = 287/629 (45%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R +G+P QE ES LQ V Y++ + G ++ +
Sbjct: 261 DLTYKLGDILKANINVQRLEINGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIIDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V +Q++S + + + D L ++ M + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY--------LI 497
P +P+P + K + W+ Q+L +P G FD G Y LI
Sbjct: 551 YWIPDWDGVIPKPTILKPK--PLWSGKQLLSMAIPNGIHLQRFDE-GTTYLSPKDNGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+++ G D+ T+ S ++ + EKGP+ + F ++Q ++ L +GFS+ +
Sbjct: 608 IDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIG 667
Query: 558 D--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRH 601
D +L+K + + KE QA H M+ + D ++ N R
Sbjct: 668 DTIADEKTMREITEAIALAKKRVQEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARD 727
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ L+ + + ++ + S + + Q + +G Q S GK + + H
Sbjct: 728 KAGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPH 786
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 787 FSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 841
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN N IIQF Y
Sbjct: 842 VKALEDIMVHYDGTTRNSLGN-IIQFVYG 869
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ + L +P LG KC++CG
Sbjct: 17 VQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNYKCQTCGEGM-N 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H IS++K
Sbjct: 76 DCPGHFGHIELAKPVFHIGFISKIK 100
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 169/629 (26%), Positives = 285/629 (45%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R +G+P QE ES LQ V Y++ + G ++ +
Sbjct: 261 DLTYKLGDILKANINVQRLEINGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY--------LI 497
P +P P + K + W+ Q+L +P G FD G Y LI
Sbjct: 551 YWIPDWDGVIPTPTILKPK--PLWSGKQLLSMAIPSGIHLQRFDE-GTTYLSPKDNGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+++ G D+ T+ S ++ + EKGPE + F ++Q ++ L +GFS+ +
Sbjct: 608 IDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIG 667
Query: 558 D--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRH 601
D +L+K + + KE QA H M+ + D ++ N R
Sbjct: 668 DTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARD 727
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ + S + + Q + +G Q S GK + + H
Sbjct: 728 KAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPH 786
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 787 FSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 841
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN N IIQF Y
Sbjct: 842 VKALEDIMVHYDGTTRNSLGN-IIQFVYG 869
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ + L +P LG KC++CG
Sbjct: 17 VQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNFKCQTCGEGM-N 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H IS++K
Sbjct: 76 DCPGHFGHIELAKPVFHIGFISKIK 100
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 169/629 (26%), Positives = 285/629 (45%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R +G+P QE ES LQ V Y++ + G ++ +
Sbjct: 261 DLTYKLGDILKANINVQRLEINGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY--------LI 497
P +P P + K + W+ Q+L +P G FD G Y LI
Sbjct: 551 YWIPDWDGVIPTPTILKPK--PLWSGKQLLSMAIPSGIHLQRFDE-GTTYLSPKDNGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+++ G D+ T+ S ++ + EKGPE + F ++Q ++ L +GFS+ +
Sbjct: 608 IDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIG 667
Query: 558 D--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRH 601
D +L+K + + KE QA H M+ + D ++ N R
Sbjct: 668 DTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARD 727
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ + S + + Q + +G Q S GK + + H
Sbjct: 728 KAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPH 786
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 787 FSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 841
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN N IIQF Y
Sbjct: 842 VKALEDIMVHYDGTTRNSLGN-IIQFVYG 869
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ + L +P LG KC++CG
Sbjct: 17 VQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNFKCQTCGEGM-N 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H IS++K
Sbjct: 76 DCPGHFGHIELAKPVFHIGFISKIK 100
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 172/694 (24%), Positives = 307/694 (44%), Gaps = 74/694 (10%)
Query: 108 QRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+R L + E+ + K I PE+ + + Y + ++ L VPP + + +
Sbjct: 203 ERRLLTPSEILSVFKHISPEDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTAR 262
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VR 217
DL+ + + + + R G+P E E+ LQ V Y++ ++
Sbjct: 263 GEDDLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQ 321
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
T + + + AR K ++R + K FS+R+VI+GD ++++GV
Sbjct: 322 KTGRPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGV 371
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFL 330
P IA+ +++ E V +NI+ L E V N D LR + G L
Sbjct: 372 PISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIAL 431
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
+ G V R +MD D V NR P+ HK S+ + V V T ++N + P +ADFDGD
Sbjct: 432 QYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHKVKVMPYSTFRLNLSVTSPYNADFDGDE 491
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFT 449
++L PQS +AE+ E+ +V Q++S + + + D L ++ M + F++ +
Sbjct: 492 MNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE--YD 549
Query: 450 QQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD------ 493
Q + M P +P PA+ K + WT Q+L +P G FD +
Sbjct: 550 QVMNMLYWIPVWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKD 607
Query: 494 -RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI E++ G D+ T+ S ++ ++ EKGP+ + F SLQ ++ L +GF
Sbjct: 608 SGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSLQKVVNYWLLHNGF 667
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-----VDL---------QIE 596
S+ + D + + N+ I+ + + + QN+L + L ++
Sbjct: 668 SIGIGDTIADASTMKNVTTTIEDAKKKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVL 727
Query: 597 NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 728 NQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFAD 786
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 787 RTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 841
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 842 IQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 874
Score = 43.9 bits (102), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ +I ++ L +P LG KC++C + +
Sbjct: 18 VQFGLLSPEEVRAISVAKVEFPETIDQTTKRPREGGLNDPRLGSIDRNFKCQTC-SEDMT 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 201/839 (23%), Positives = 368/839 (43%), Gaps = 104/839 (12%)
Query: 108 QRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCL----SVPDISD 162
+R L + E+ + K I PE+ K + Y + I+ LPVPP + V D +
Sbjct: 9 ERRLLTPGEILNVFKHISPEDCYKLGFSEDYARPEWMIITVLPVPPPAVRPSVQVTDTTR 68
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTA 220
G DL+ + V + + + G+P E ES LQ V Y++ + G
Sbjct: 69 G----EDDLTFKLADIVKYNMSVQKLEMDGSPQHVISEYESL-LQFHVATYMDNDIAGQP 123
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIG 276
++ + S P + +A L+ ++R + K FS+R+VI+GD ++++G
Sbjct: 124 QALQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVG 176
Query: 277 VPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTF 329
VP IA+ +T+ E V +NI+ L ELV N L + D L+ + G
Sbjct: 177 VPRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPGLRYVFRDTGERIDLKYHKRAGDIA 236
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+ G +V R +MD D V NR P+ HK S+ A V V + ++N + P +ADFDGD
Sbjct: 237 LQYGWIVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRLNLSVTSPYNADFDGD 296
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAF 448
++L PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ +
Sbjct: 297 EMNLHVPQSEETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIE--Y 354
Query: 449 TQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGF--------------D 489
+ + + P +P P + K + WT Q+L V+P G D
Sbjct: 355 DEVMNILYWIPSWDGVIPEPTIVKPK--PLWTGKQMLSMVIPKGINLERKDEKFTYLSND 412
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
G LI E++ G ++ T+ + ++ ++F EKGP+ + F ++Q ++ L
Sbjct: 413 DTG--MLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQVCADLFGNMQKVVNYWLLH 470
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------L 593
GFS+ + D + +I I ++ + + +NEL
Sbjct: 471 YGFSIGIGDTIADAPTVKSITHTIVTAKEKVHEIILKAQRNELPPEPGMTLRESFEQSVS 530
Query: 594 QIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
Q+ N R V A + + + ++ + S + + Q + +G Q+ + GK
Sbjct: 531 QVLNQARDDVGKATADALQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVE-GKRIPFG 589
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 590 FADRSLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 644
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAAT- 771
G + + L+ L D+++ YDGT RN N ++QF Y + + + + + + T
Sbjct: 645 TGYIQRRLVKALEDIMVHYDGTARNSLGN-VLQFVYGEDGLDATQV--EKQSIDTIPGTD 701
Query: 772 -AMSNPAYKAVLDSSPS-----SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGR 825
A +N V++ S N E++ +I L +V +DR L+D R
Sbjct: 702 FAFANRYRIDVMEEEHSLRPELIENGSEILGDIALQKV------LDREYNQLLSDRRYLR 755
Query: 826 KYCQERAAYM--VKNQLKRVSLKDAAVEFLIEYKK------PEIISDDEGLVGHIHLNK 876
C + + + ++RV +++A F I+ + PEI+ E L I++ K
Sbjct: 756 DVCFQNGDFQWPLPVNIRRV-IQNAQKIFYIDSSRVSDLTLPEIVDGVETLCSKIYVTK 813
>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
Length = 869
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 166/626 (26%), Positives = 285/626 (45%), Gaps = 63/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + RS G P E E LQ V Y++ + G ++ +
Sbjct: 73 DLTYKLADIIKANANVQRSETEGAPAHVLNEFEML-LQYHVATYMDNNIAGQPQALQK-- 129
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 130 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPNLELDQVGVPKSIAR 184
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI+ L E V N D LR + G L+ G V
Sbjct: 185 TLSYPETVTPYNIHRLTEYVRNGPNEHPGAKYIIRDSGERIDLRYHKRVGDIQLQYGWKV 244
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 245 ERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLHVP 304
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M + FLD Q + +
Sbjct: 305 QSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLDYHSVQNILFW 364
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIKKS 500
+ +P+PA+ K + WT Q++ +PPG FD + L+ K
Sbjct: 365 VPNWDGVVPQPAILKPK--PLWTGKQMVSMAIPPGIFMQRFDENNPINSPKDNGMLVYKG 422
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
EV+ G ++ T+ + ++ +IF EKGP+ +F LQ ++ L GFS+ + D
Sbjct: 423 EVMYGVVNKKTVGATAGGLIHTIFREKGPQACSQFVGDLQKIVNYWLLHVGFSIGIGDTI 482
Query: 561 LSKAALWNIQKEIQALYSLLYH-----RMSTQNELVDLQIE-----------NHIRHVKM 604
A ++N+ + I S + + +T N + + N R
Sbjct: 483 ADAATMYNVTQTIADAKSKVQQIINDAQANTLNPEPGMTLRESFEASVIRELNSARDTSG 542
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK + + ++ + S + + Q + +G Q+ + GK V+ HF R
Sbjct: 543 REAETSLKDDNNVKQMVSAGSKGSFINISQMSACVGQQIVE-GKRIGFGFVDRSLPHFTR 601
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
D P +K G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 602 ----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 656
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDG+ RN + +IQF Y
Sbjct: 657 LEDVMVQYDGSARNSLGD-VIQFVYG 681
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 158/599 (26%), Positives = 272/599 (45%), Gaps = 73/599 (12%)
Query: 206 LQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
LQ + Y+ + + KS+R V A G K ++R + K FS
Sbjct: 294 LQYHIATYMDNDIAGQPKAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFS 346
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTY 311
+R+VITGD ++E+GVP IA+ +T+ E V +NIN L LV+N K +
Sbjct: 347 ARTVITGDPNLSLDEVGVPISIAKTLTYTEIVTPYNINKLAALVENGPDIHPGAKYIIRP 406
Query: 312 SDGSSSYSLREG-SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
+ + +G ++G L+ G V R I DGD + NR P+ HK S+ A V V
Sbjct: 407 TGEKINLGFNKGQAQGRAMLQYGFKVERHIQDGDVILFNRQPSLHKESMMAHKVRVMPYS 466
Query: 371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
T ++N + P +ADFDGD ++L PQS +KAE+ EL V ++S + + D
Sbjct: 467 TFRLNLSVTTPYNADFDGDEMNLHVPQSEESKAELRELALVPLNIVSPQRNGPLMGIVQD 526
Query: 431 ALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP 486
L + K+ + FL K + M+ +P+PA+ K R RWT QI+ VLP
Sbjct: 527 TLCGIYKICRRDTFLTKDHVMNIMMWVPDWDGVIPQPAILKPR--PRWTGKQIISMVLPS 584
Query: 487 GFD---------SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 529
G + +R+ I E++ G F + T+ + ++ +IF E G
Sbjct: 585 GLNLLRLDKDGAPLAERFSPLKDGGVFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGS 644
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE 589
+ + FF+ Q ++ L +GFS+ + D A + I++ ++ R ++
Sbjct: 645 DVAMSFFNGAQRVVNYWLLHNGFSIGIGDTIPDAATVAKIEEAVR-------DRKEEVDD 697
Query: 590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSA-VSKVVQQAGFLGLQLSDRGKF 648
+ D N + + + + +S L +++ D+ V++ + G+Q++ G
Sbjct: 698 ITDDATRNALDPLPGMNIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSK 757
Query: 649 YSK-------TLVEDIASHFERIYPMDLNYPTAKY-----------GLIKGCFFHGLDPY 690
S +V + +RI P Y T + G ++ + GL P
Sbjct: 758 GSTINISQMMAIVGQQSVEGKRI-PFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPT 816
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 817 EFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYG 874
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 171/630 (27%), Positives = 277/630 (43%), Gaps = 67/630 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + R + G P +E E+ LQ V Y+ + + KS+
Sbjct: 278 DLTFKLAEIIRANQNLQRCEQEGAPEHVVREFEAL-LQYHVATYMDNDIAGQPKAMTKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VI GD + E+G P A
Sbjct: 337 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLFEVGTPRSSAM 389
Query: 284 RITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKGHTFLRPGQVVH 337
+T+ E V +NI +LQ+LV+N + D LR K + L G V
Sbjct: 390 ILTYPEVVTPYNIEFLQKLVNNGPTIYPGARYIVRDNGERIDLRMARKTSSNLLYGWKVE 449
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R ++DGD + NR P+ HK S+ A V V T ++N + P +ADFDGD +++ PQ
Sbjct: 450 RHLLDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQ 509
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFA 456
S A+AE+ EL V ++S + + D+L + K+ + FL K L ++
Sbjct: 510 SEEARAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWV 569
Query: 457 L---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-RYL 496
+P+PA+ K R RWT QI+ VLP G F D L
Sbjct: 570 PDWDGVIPQPAILKPR--PRWTGKQIISMVLPSGLNLLRIDKDKAPLSEKFSPLADGGLL 627
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
+ +++ G F + T+ + IV +IF E GP+ + FFD Q ++ L +GFS+ +
Sbjct: 628 VHGGQLMYGMFSKKTVGASGGGIVHTIFNEYGPDAAVTFFDGAQRVVNYWLLHNGFSIGI 687
Query: 557 EDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI---- 610
D K + I+ ++A + + + +T+N L L N + V++ +
Sbjct: 688 GDTIPDKKTIERIEAAVRAGKAEVEQIVQSATENTLEPLPGMNIRETFESKVSRALNNAR 747
Query: 611 --LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
S T L D S S + + Q +G Q S GK
Sbjct: 748 EEAGSETEKSLKDLNNAVQMARSGSKGSTINISQMTAIVG-QQSVEGKRIPFGFKYRTLP 806
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 807 HFTKD-----DYSPESRGFVENSYLRGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRK 861
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L ++++ YDGTVRN + IIQF Y
Sbjct: 862 LVKALEELMVKYDGTVRNSLGD-IIQFLYG 890
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 171/629 (27%), Positives = 277/629 (44%), Gaps = 70/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 275 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 334 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + SDG+ L G V
Sbjct: 387 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FLDK L ++
Sbjct: 507 QSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLW 566
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP--GFDSCGDR---------YLIKKSE 501
+ +P+PA+ K R RWT QI+ V+P + D+ LI+ E
Sbjct: 567 VPNWDGIIPQPAILKPR--PRWTGKQIISMVIPKEISLHAPEDKSESPLRDTGLLIQAGE 624
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + I S ++ + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 625 LMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLNGVQQVVSYWLLQNGHSIGIGDTIP 684
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKM 604
K + +Q I Q M+T NEL V EN +
Sbjct: 685 DKQTIEKVQVHIDTQKAEVARLTAMATANELEALPGMNVRATFENKVSMALNMARDQAGT 744
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
K + S+ + +S S + + Q +G Q+ + + F +TL H
Sbjct: 745 TTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PH 799
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 800 FTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 854
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+ YDGTVRN + IIQF Y
Sbjct: 855 VKALEDLNAQYDGTVRNSLGD-IIQFLYG 882
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI + S++ + L +P LG KC++C T G
Sbjct: 19 IQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDRQFKCKTC-TQAMG 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 170/629 (27%), Positives = 284/629 (45%), Gaps = 52/629 (8%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P QE E N LQ V Y++ +
Sbjct: 185 DGGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFE-NLLQFHVATYMDNNIA 243
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 244 GLPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 296
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 297 EVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPGAKYVIRDSGERIDLRHHKRAG 356
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 357 DINLAYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 416
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS +AEV +L V ++S + + D L + M ++ FL
Sbjct: 417 DGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLT 476
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------FDSC 491
K + ++ +P+PA+ K + WT QIL V+PPG F
Sbjct: 477 KERVMNILLWVPDWDGVIPQPAIFKPK--PLWTGKQILGLVIPPGLNLLRGSEEGFFPLN 534
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D LI E++ G ++ ++ + ++ IF EKGPE + FF+ Q ++ L +G
Sbjct: 535 DDGLLIAGGELMYGLLNKKSVGASGGGVIHIIFNEKGPEVAMNFFNGAQTVVNYWLLHNG 594
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKF 609
FS+ + D + + I+ + + + +T+N+L L N + V+K
Sbjct: 595 FSIGIGDTIPDRNTIRQIEGAVNKQKDEVEEITKSATENQLESLPGMNVRETFESKVSKA 654
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE--- 662
+ K+ + ++ ++ +Q A G G + +S + VE + F
Sbjct: 655 LNKARDDAGSVTEENLKDLNNAIQMARSGSKGSTINISQTTAVVGQQSVEGKRTPFGFKY 714
Query: 663 RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
R P +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 715 RTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRL 774
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L DV+ YDGTVRN + I+QF Y
Sbjct: 775 VKALEDVMAKYDGTVRNSLGD-IVQFIYG 802
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 171/658 (25%), Positives = 285/658 (43%), Gaps = 70/658 (10%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVE 202
I+ LPVPP + + DG S D L +LK + R + G P E
Sbjct: 170 IITVLPVPPPQVRPSVVGDGTGLRSQDDLTYKLADILKANASLKRHEQDGGPTHVVNEF- 228
Query: 203 SNDLQLAVGQYLEVR------GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGS 256
+ LQ V ++ + K R + G+ Q K ++R + K
Sbjct: 229 WDLLQYHVATMMDNQISGLPVAQQKGGRPIK---GIRQ----RLKGKEGRLRGNLMGKRV 281
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------L 309
FS+R+VITGD ++E+GVP I + +TF E VN +N ++LQ+LV N +
Sbjct: 282 DFSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRV 341
Query: 310 TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
++G G T L G V R ++DGD + NR P+ HK S+ V V
Sbjct: 342 IRANGDIVSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPSLHKMSMMGHKVRVMPF 401
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N + P +ADFDGD ++L PQS +AE++E+ V +Q++S + + +
Sbjct: 402 STFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQPVMGIVQ 461
Query: 430 DALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP 485
D L + K + FL + + M+ +P PA+ K WT Q++ +P
Sbjct: 462 DTLCGIRKFTIRDNFLSRDMVMNILMWVEDWDGVIPLPAIVKP--VPLWTGKQMMSLAIP 519
Query: 486 P----GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 529
GF S GD + +I+ +L G + T+ S ++ +I E GP
Sbjct: 520 DINLVGFSATHPDDEKGDMSVGDTKVIIEGGTILSGTMCKKTVGSSAGGVIHTIMNEHGP 579
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLSKAALWNIQKEIQA 575
+ +FF+ Q ++ L +GFSV + D +KA + I K QA
Sbjct: 580 DAAKKFFNGTQKIVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKAKADVAEIIKNAQA 639
Query: 576 LYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKV 631
L T E + ++ + + K KS + + ++ + S + +
Sbjct: 640 -NKLDAEPGMTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMVIAGSKGSFINI 698
Query: 632 VQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
Q +G Q + GK HF + D + P ++ G ++ + GL P E
Sbjct: 699 SQMTACVGQQ-NVEGKRIPYGFRYRTLPHFTK----DDHSPESR-GFVENSYLRGLSPQE 752
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE ++ ++ +E G + + L+ L DV++ YDGTVRN + ++QF Y
Sbjct: 753 FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VVQFVYG 809
>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1436
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 183/695 (26%), Positives = 297/695 (42%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +Y+P PP C+ P + S+ DL+ +
Sbjct: 253 ELLGLDPKEARPEM----------FLWQYIPAPPVCIR-PSVGQDASSTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++GS TFL+ G VV R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYLVKKGSTFKTFLKYGSLNMIADQLQEGDVVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY---------------- 495
LP PA+ K + WT Q+ ++ P D+ Y
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVMVNLDAACREYKPPKDGRPKDLDPKDG 651
Query: 496 --LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+I+ SEV+ G D+ TI S + V + GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST-------------QNELVDLQ 594
S+ + D S+ L + ++ Y+ + ++ T +N+L +
Sbjct: 712 SIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGIL 771
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+PYE + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSRYDDTVRN-SSGHIVQFQYG 918
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 176/659 (26%), Positives = 298/659 (45%), Gaps = 74/659 (11%)
Query: 145 LEYLPVPPNCLS-VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVE 202
+ L VPP + ++++G DL+ + ++K ++R + G+P E E
Sbjct: 172 ITVLAVPPMPVRPAVNMNNGGGVSQDDLTYK-IADIVKTNNLLRKHEAEGSPAHVINEFE 230
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
LQ V Y+ ++ G K+ + S P + +A L+ ++R + K
Sbjct: 231 KL-LQYHVATYMNNDISGIPKAQQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRV 282
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LT 310
FS+R+VITGD ++++GVP IA+ +TF E V +NI LQ+ V N
Sbjct: 283 DFSARTVITGDPNLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQNGPMEHPGAKYV 342
Query: 311 YSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
D LR G L+PG V R +MD D V NR P+ HK S+ V V
Sbjct: 343 IRDNGERIDLRYSKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMSMMGHRVKVMPY 402
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N + P +ADFDGD ++L PQS +AE+ EL V KQ+++ + +
Sbjct: 403 STFRLNLSVTSPYNADFDGDEMNLHVPQSYETRAEIQELCMVPKQIVTPQKNGPCMGIVQ 462
Query: 430 DALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP 485
D L +++ ++ FL K L M+ +P P + K WT Q++ ++P
Sbjct: 463 DTLCAIRKFTRRDCFLSKDMVMNLLMWVPDWDGTVPTPCIIKP--IPLWTGKQMMSLIIP 520
Query: 486 P----GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 529
G+ S GD + I+ E+L G + T+ S N I+ F E GP
Sbjct: 521 RINMVGYHMAHPDDEKSDISPGDTKVYIEDGELLTGILCKKTVGSSQNGIIHITFNEHGP 580
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ--------------- 574
E FF+S Q ++ L +GFS+ + D K + I + IQ
Sbjct: 581 EAAKGFFNSCQLIVNYWLLHNGFSIGIGDTIADKQTMEKINQSIQSAKAEVNKIIAKAQR 640
Query: 575 ---ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSK 630
A+ + R+S + LV+ ++ N R + A+ LK + + ++ + S +
Sbjct: 641 DELAVLPGMTIRLSFE-ALVNKEL-NRARDMAGKSAERSLKEQNNVKQMVTAGSKGSFIN 698
Query: 631 VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPY 690
+ Q G +G Q + GK + HF + D + P ++ G ++ + GL P
Sbjct: 699 ISQMTGCVG-QQNVEGKRIPFGFKDRSLPHFTK----DDHSPESR-GFVENSYLRGLTPQ 752
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ + DV++ YDGT+R+ ++IQF Y
Sbjct: 753 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTIRDSLG-TVIQFCYG 810
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 171/686 (24%), Positives = 304/686 (44%), Gaps = 72/686 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + + DL+ + + + R G+P +QE E N LQ V Y++ +
Sbjct: 175 DGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFE-NLLQFHVATYMDNNIA 233
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 234 GLGQALQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 286
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI L +LV N D LR + G
Sbjct: 287 EVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 346
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 347 EISLQYGWKVERHIVDGDFIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 406
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AEV +L V ++S + + + D L + K+ + FL+
Sbjct: 407 DGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 466
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC---------GD 493
+ + ++ +P+PA+ K + WT QI+ V+P G + D
Sbjct: 467 QEQVMNILLWVPEWDGIIPQPAVLKP--TPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDD 524
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+ E++ G ++ + + + I+ ++ EKGPE + FF+ Q ++ L +GFS
Sbjct: 525 GIFVSSGELMFGLLNKKVVGAAMGGIIHIVYNEKGPEAAMNFFNGAQAVVNYWLLHNGFS 584
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFIL 611
+ + D + + I++ + A + +M+T++ L L N + V+K +
Sbjct: 585 IGIGDTIPDRETIRLIEEAVNAQKREVAEITQMATESRLDTLPGMNVRETFESRVSKALN 644
Query: 612 KS---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSK 651
K+ + + S S + + Q +G Q S GK F +
Sbjct: 645 KARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYR 703
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TL HF + +Y G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 704 TL-----PHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 753
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAAT 771
E G + + L+ L DV+ YDGT+RN + I+QF Y + + P + V +
Sbjct: 754 ETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLDGAHIEPQRLDIIVCSDA 812
Query: 772 AMSNPAYKAVLDSSPSSNNSWELMKE 797
++D +P + S E +++
Sbjct: 813 KFEKDFRIDLMDDNPRTTVSAEFLEQ 838
>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
Length = 872
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 179/696 (25%), Positives = 308/696 (44%), Gaps = 70/696 (10%)
Query: 104 DGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISD 162
D +R L + E+ + + I PE+ + + Y + I+ LPVPP + P I+
Sbjct: 7 DAQPERKLLTPGEILNVFRHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVR-PSIAM 65
Query: 163 GVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------E 215
+T D L +LK + + + G+P EVE LQ V Y+ +
Sbjct: 66 DETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVEQL-LQFHVATYMDNDIAGQ 124
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ KS R V A + K ++R + K FS+R+VI+GD ++++
Sbjct: 125 PQALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQV 177
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +++ E V +NI+ L E V N D LR + G
Sbjct: 178 GVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDI 237
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDG
Sbjct: 238 VLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDG 297
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKA 447
D ++L PQS +AE+ +L +V Q++S + + + D L ++ M + F++
Sbjct: 298 DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE-- 355
Query: 448 FTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG------------FDS 490
+ Q + M P +P+PA+ K + WT Q+L +P G
Sbjct: 356 YEQVMNMLFWVPSWDGVVPQPAIMKPK--PLWTGKQLLSIAIPSGIHLQRTDGGNSLLSP 413
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ LI V+ G D+ T+ S ++ ++ EKGP+ E F ++Q ++ L +
Sbjct: 414 KDNGMLIVDGNVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHN 473
Query: 551 GFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNELVD------------LQ 594
GFS+ + D + + I I + + ++Y + EL +
Sbjct: 474 GFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSR 533
Query: 595 IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
N R A+ LK + + ++ + S + + Q + +G Q+ + GK +
Sbjct: 534 TLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVE-GKRIAFGF 592
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 593 ADRSLPHFTK----DDFSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 647
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFLYG 682
>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
RIB40]
gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
Length = 1447
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 183/695 (26%), Positives = 297/695 (42%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +Y+P PP C+ P + S+ DL+ +
Sbjct: 253 ELLGLDPKEARPEM----------FLWQYIPAPPVCIR-PSVGQDASSTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++GS TFL+ G VV R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYLVKKGSTFKTFLKYGSLNMIADQLQEGDVVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY---------------- 495
LP PA+ K + WT Q+ ++ P D+ Y
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVMVNLDAACREYKPPKDGRPKDLDPKDG 651
Query: 496 --LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+I+ SEV+ G D+ TI S + V + GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST-------------QNELVDLQ 594
S+ + D S+ L + ++ Y+ + ++ T +N+L +
Sbjct: 712 SIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGIL 771
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+PYE + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSRYDDTVRN-SSGHIVQFQYG 918
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 168/625 (26%), Positives = 273/625 (43%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E LQ V Y++ + G ++ +
Sbjct: 196 DLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIAGQPQALQK-- 252
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 253 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 307
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 308 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 367
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 368 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 427
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AEV +L V ++S + + D L + M ++ FL K + ++
Sbjct: 428 QSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLW 487
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSE 501
+P+PA+ K R WT QIL V+P G + D L+ E
Sbjct: 488 VPDWDGVIPQPAILKPR--PMWTGKQILSLVIPAGLNLLRGSDEGFSPLNDDGLLVSGGE 545
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G ++ ++ + ++ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 546 LMYGLLNKKSVGATGGGVIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 605
Query: 562 SKAALWNIQKEIQALYSLL--YHRMSTQNELVDL--------------QIENHIRHVKML 605
+ + IQ + A + R +T NEL L + N+ R
Sbjct: 606 DRETIKRIQNAVTAQKDEVDRITRSATDNELESLPGMNVRETFESKVSKALNNARDEAGR 665
Query: 606 VAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
V + LK + + S S + + Q +G Q S GK HF +
Sbjct: 666 VTEDSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 724
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 725 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 779
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 780 EDVMAKYDGTVRNSLGD-IVQFVYG 803
>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
Length = 995
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 155/542 (28%), Positives = 252/542 (46%), Gaps = 46/542 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 250 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 309
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ Y +RE + G L+ G V R I+DGD + NR P+ H
Sbjct: 310 G---PNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLH 366
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ V V T ++N + P +ADFDG ++L PQS +AE+ +L V +
Sbjct: 367 KESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGGEMNLHVPQSEETRAEINQLCMVPLNI 426
Query: 416 LSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+S + + D L + K+ + FL K Q + + P LP+PA+ K R
Sbjct: 427 VSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKE--QAMNILLWVPDWDGLLPQPAILKPR 484
Query: 470 CSARWTALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINE 518
+WT QI+ V+PPG + S G D L+ +++ G + ++ + +
Sbjct: 485 --PKWTGKQIISLVIPPGLNLNRPVSEGFSPVNDDGLLVSGGKLMYGLLSKKSVGASGSG 542
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS 578
IV IF EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ +
Sbjct: 543 IVHIIFNEKGPEAAMKFFNGAQTVVNFWLLHNGFSIGIGDTIPDRNTIQQIEDAVNKQKE 602
Query: 579 LLYH--RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA- 635
+ R +T+NEL L N + V+K + K+ + KS ++ Q A
Sbjct: 603 DVAEITRSATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMAR 662
Query: 636 -GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGL 687
G G + +S + VE F R P +Y G ++ + GL
Sbjct: 663 SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 722
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P E H+++ RE + ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 723 TPTEFFFHAMAGREGFIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFV 781
Query: 748 YA 749
Y
Sbjct: 782 YG 783
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 248/544 (45%), Gaps = 49/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ ERV +N +L ELV N
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 306 K------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
D L+ + L+PG +V R + DGD V NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYVLFNRQPSLHKMSM 468
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ + + D T ++N + P +ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 420 NGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWT 475
+ + D L + K + LD QQ+ ++ +P P + K + W+
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKPK--PYWS 586
Query: 476 ALQILQSVLPPGFDSCGDR-------------YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
QIL +P G + D+ I+ E++ G ++ + + ++
Sbjct: 587 GKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHI 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL-- 580
IF EKGP FF +Q ++ L +GFS+ + D KA +I + I A S +
Sbjct: 647 IFREKGPVICKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTISAAKSAVMD 706
Query: 581 ---YHRMS--------TQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKSD 625
Y R T E + + + + V S + + ++ S S
Sbjct: 707 YIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEGSLPDFNNVKQMVVSGSK 766
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q S GK HF + D P ++ G ++ +
Sbjct: 767 GSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFTK----DDFTPESR-GFVENSYLR 820
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL E H+++ RE ++ ++ +E G + + L+ L DV++CYDGTVRN +N++IQ
Sbjct: 821 GLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNNVIQ 879
Query: 746 FDYA 749
F Y
Sbjct: 880 FAYG 883
Score = 44.7 bits (104), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ---------LANPFLGLPLEFGKCESCGTSEPGK 67
++FG+ + +EI S+ + L++P LG KC++CG +
Sbjct: 22 VQFGILSPEEIRAISVCKVEVPEIKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGH-QE 80
Query: 68 CEGHFGYIELPIPIYHPSHISELK 91
C GHFG+I+L P++H ++ ++K
Sbjct: 81 CPGHFGHIDLAKPVFHIGYLGKVK 104
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 166/628 (26%), Positives = 283/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ + V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDDDPVLFNRQPSLHKMSMMSHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++++ K FL+ F L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLKDTFLE--FDHVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + WT QIL + +P G FD + LI
Sbjct: 551 YWVPDWDGIIPTPAILKPK--PLWTGKQILSAAIPKGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCSRLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + + KE QA H M+ + D ++ N R
Sbjct: 669 TIANGETIKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKSST-LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L + + ++ + S + + Q + +G Q S GK V+ HF
Sbjct: 729 AGRLAEVNLNDTNYVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGYGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N IIQF Y
Sbjct: 843 KALEDIMVHYDGTTRNSLGN-IIQFIYG 869
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +E+ S++ + L +P LG KC++C G +E
Sbjct: 17 VQFGLFSPEEVRAISVAKVRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+I+L P++H IS++K
Sbjct: 77 ---CPGHFGHIDLAKPVFHVGFISKIK 100
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 185/704 (26%), Positives = 312/704 (44%), Gaps = 79/704 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E + L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------ILKRISDEDCRLLGLDPKYARPDWMILQVLPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 298 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 357
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 358 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 417
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 418 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 477
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 478 FMNILMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLIRQSAWHSETETGFI 535
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 536 TPGDTQVRIERGELLCGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 595
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQ--------IENHI 599
+GFS+ + D A + I + I +A + M+ Q++ ++ + EN +
Sbjct: 596 QNGFSIGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEPGRTMTESFENRV 655
Query: 600 RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSK 651
V + A+ SS L +S + A+ + F+ + Q + GK
Sbjct: 656 NQV-LNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPY 714
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
+ HF + D N P ++ G ++ + GL P E H++ RE ++ ++ S
Sbjct: 715 GFIGRTLPHFTK----DDNGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS 755
E G + + L+ + D+++ YDGTVRN + +IQF Y + S
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDS 812
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 170/629 (27%), Positives = 277/629 (44%), Gaps = 70/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 275 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 334 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + SDG+ L G V
Sbjct: 387 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FLDK L ++
Sbjct: 507 QSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLW 566
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP--GFDSCGDR---------YLIKKSE 501
+ +P+PA+ K R RWT QI+ V+P ++ D+ LI+ E
Sbjct: 567 VPNWDGIIPQPAILKPR--PRWTGKQIISMVIPKEISLNAPEDKADNPLNDTGLLIQAGE 624
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + +I S ++ + E GPE + F + +Q + L +G S+ + D
Sbjct: 625 LMYGLMKKKSIGSASGGVIHLCYNELGPEGAMAFLNGVQQVTAYWLLQEGHSIGIGDTIP 684
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKM 604
K + +Q I Q +T NEL V EN +
Sbjct: 685 DKQTIEKVQAHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNQARDQAGT 744
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
K + S+ + +S S + + Q +G Q+ + + F +TL H
Sbjct: 745 TTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PH 799
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 800 FTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 854
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+ YDGTVRN + IIQF Y
Sbjct: 855 VKALEDLNAQYDGTVRNSLGD-IIQFLYG 882
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI + S++ + L +P LG KC++C T G
Sbjct: 19 IQFGLLSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDRQFKCKTC-TQAMG 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 184/702 (26%), Positives = 305/702 (43%), Gaps = 95/702 (13%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S +V ++LK+I E + F + D ++ +PV P + P I + S D
Sbjct: 142 SVTQVLQVLKKISREDAVAMGLNVEFARPDWLVITVMPVAPMSVR-PSIQVDATRQSEDD 200
Query: 172 SIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L +LK +RS G P +E ES LQ V ++ E+ G ++ +
Sbjct: 201 LTYKLNDILKANARVRSCELEGAPLHIIEEFESL-LQFHVATFMNNELSGLPQALQK--- 256
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P + +A L+ ++R + K FS+R+VI GD ++++GVP IA+
Sbjct: 257 ----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKN 312
Query: 285 ITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQVVH 337
+T+ E V +NI+ LQE+V N D LR +G L+ G V
Sbjct: 313 LTYPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLQIGYRVE 372
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQ
Sbjct: 373 RNLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQ 432
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL 457
S +AE+ EL V KQ++S + + D L +L +MF K +++
Sbjct: 433 SEETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCAL-LMFTKRDTLMRLDMVMSLLLK 491
Query: 458 SP-----LPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RY 495
P +P P + K + W+ QI ++P G + S GD R
Sbjct: 492 VPGWDGLIPTPCILKPQ--PLWSGKQIFSLIIPKGINCYTFFKDHPDNETAWCSPGDSRV 549
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+I+ E+L G + T+ +V IV IF E G E FF Q ++ + ++GFS+
Sbjct: 550 VIENGELLSGIICKQTVGAVRGGIVHVIFNELGSEAAKIFFGGTQRVVNLWMLSNGFSIG 609
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSST 615
+ D +A+ ++ I Y + +E++ IE+ + + + K +S T
Sbjct: 610 IGDTIADDSAMESVGNIITESYMRV-------DEMIKDTIEDRLDCLPGMTLKETFESGT 662
Query: 616 ------------------------LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ ++ S S + V Q +G Q + +
Sbjct: 663 NLELNRARDLAGKSVQTRLKECNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGRRIPFG 722
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
F ++TL HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 723 FRNRTL-----PHFTKD-----DYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLIDTA 772
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+++ YDGTVRN SII+F Y
Sbjct: 773 VKTAETGYIQRRLVKALEDIMVHYDGTVRNSLG-SIIEFAYG 813
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 184/691 (26%), Positives = 307/691 (44%), Gaps = 69/691 (9%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
QR+LS+ E+ + K I E +L F + +++ + P P IS S
Sbjct: 199 QRVLSTE-EILNIFKHISPEDSYRLGFNEEFARPEWMILTVLPVPPPPVRPSISFNESQR 257
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
D L +LK + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 258 GEDDLTFKLADILKANISLETLEHNGAPHHAVEEAESL-LQFHVATYMDNDIAGQPQALQ 316
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 317 K-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L +LV N D LR + G L+ G
Sbjct: 370 IARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDVQLQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L + K+ + FL+ F Q L
Sbjct: 490 HVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLE--FDQVL 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + W+ QIL +P G FD +
Sbjct: 548 NMLYWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPKGIHLQRFDEGTTLLSPKDNGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
L+ E++ G D+ T+ S ++ + EKGP F ++Q ++ L +GFS
Sbjct: 606 LVIDGEIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKVVNFWLLHNGFSTG 665
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
+ D + +K + + KE QA H M+ + D ++ N
Sbjct: 666 IGDTVADGQTMREISETIAEAKQKVEAVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 725
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ LK + + ++ + S + + Q + +G Q S GK V+
Sbjct: 726 RDRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGFGFVDRTL 784
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 785 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN N +IQF Y
Sbjct: 840 RLVKALEDIMVHYDGTTRNSLGN-VIQFIYG 869
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 169/638 (26%), Positives = 275/638 (43%), Gaps = 65/638 (10%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGT 219
D + DL+ + V VE+ R ++G P E LQ V +E + G
Sbjct: 188 DSTTAAQDDLTFKLGDIVRTNVELKRKIKAGAPQHIIDEFWLM-LQYHVANIIETDISGF 246
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
K + R V + S K ++R + K FS+RSVIT D VNE+GVP
Sbjct: 247 PKPVQKGSGR--VLKSIRSRLKGKHGRIRGNLMGKRVDFSARSVITADPNLSVNEVGVPR 304
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF---------- 329
IA +T+ E V NI +++LV+N + ++Y +RE +
Sbjct: 305 TIALNLTYPETVTPFNIQRMRQLVENG---PHKHPGANYVIREDGERLDLRRIRDRSTVP 361
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R I DGD V NR PT HK S+ V V T ++N + P +ADFDGD
Sbjct: 362 LSYGWKVERHIHDGDVVVFNRQPTLHKMSMMGHRVRVLPYSTFRLNLSVTTPYNADFDGD 421
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
++L PQS +AE+ EL V + ++S + + D+LL K+ K+ FL++
Sbjct: 422 EMNLHVPQSHETRAELEELMMVPRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDL 481
Query: 449 TQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPP-----------------GF 488
M+ S +P+PA+ K + WT Q+ ++PP F
Sbjct: 482 VNNTLMWLPSWDGHVPKPAILKPK--QLWTGKQVFSLIVPPVNVLRKSIGAPDKEDNDDF 539
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ + I++ EVL G ++T+ + +V I+ E G E F DS+Q ++ L
Sbjct: 540 TASDTKVRIEQGEVLSGIVCKNTVGNASGSLVHIIWNELGHEATRNFLDSVQTVINYWLM 599
Query: 549 ADGFSVSLEDFSLSKAALWNIQK-------EIQALYSLLYHRM------STQNELVDLQI 595
GFS+ + D A + NI K E+ L + L+ T E ++++
Sbjct: 600 NRGFSIGIGDTIADPATMQNITKIIGRSKQEVSDLITQLHEGKLEATPGRTLMETFEMKV 659
Query: 596 ENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
+ + K + S + ++ + S + + Q +G Q + GK
Sbjct: 660 NTALNKARDEAGKAAVGSLRATNAAKEMVTAGSKGSNINIAQMIACVG-QQNVEGKRIPY 718
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + + G ++ + GL+P E H++ RE ++ ++ S
Sbjct: 719 GFRNRTLPHF-----VTNDMTPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTS 773
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + LM + DV++ YDGTVRN ++QF Y
Sbjct: 774 ETGYIQRRLMKAMEDVMVKYDGTVRNSVG-EVVQFLYG 810
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 180/698 (25%), Positives = 302/698 (43%), Gaps = 79/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E L Y D IL+ LP+PP + + D S
Sbjct: 136 AERVLS-------ILKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSS 188
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 189 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRAT 247
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 248 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 300
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 301 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 361 LELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 421 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 481 FMNILMWWEDFDGKIPAPAILKPR--PLWTGKQVFNLIIPKQINLIRTSAWHSESETGFI 538
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD ++ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 539 TPGDTHVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 598
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI 599
+GFS+ + D A + I + I + + + E + EN +
Sbjct: 599 QNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRV 658
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 659 NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPY 717
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
++ HF + +Y G ++ + GL P E H++ RE ++ ++ S
Sbjct: 718 GFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 173/689 (25%), Positives = 304/689 (44%), Gaps = 76/689 (11%)
Query: 116 EVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
EVK++ + I ++ + + Y + ++ LPVPP + +G+ DL+
Sbjct: 137 EVKQLFESISDDDAEAMGFSPDYSRPEWMVISILPVPPMAVRPSVHQEGLGRSEDDLTHK 196
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGV 232
++ + + ++ + G P +E E+ LQ V ++ + G +S +
Sbjct: 197 LMDILKANNTLKKNEQDGAPQQIIREFEAL-LQYQVATLMDNDLAGVPQSLQK------- 248
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S+ P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+ +TF
Sbjct: 249 SRRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIAKNMTFP 308
Query: 289 ERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
E+V NI L + V+N D LR G L+ G +V R + D
Sbjct: 309 EKVTPFNIEVLTKTVENGPNEHPGAKFVIRDNGDRIDLRHARAGAIALQVGYIVERHMRD 368
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS
Sbjct: 369 DDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHLPQSYETA 428
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---S 458
AE++EL V KQ++S + + D L ++ K+ FLD L M+
Sbjct: 429 AEIVELCIVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLDMDIMMNLLMWVPDWDG 488
Query: 459 PLPRPALSKARCSARWTALQILQSVLPP---------------GFDSCGD-RYLIKKSEV 502
LP P + K WT Q + ++P G +S GD + LI+ E+
Sbjct: 489 TLPTPCIIKP--IPLWTGKQAMSLIIPNINLTAYHAAHPDKEVGDNSPGDTKVLIEHGEL 546
Query: 503 LKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G + T+ S I+ + E GPE +FF++ Q ++ L GFS+ + D
Sbjct: 547 VMGILCKKTVGSSAGGGIIHTAVMEHGPETAKKFFNAAQRVVNYWLLHRGFSIGIGDTIA 606
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNEL-----------VDLQIENHIRHVKMLVAK 608
++ +I IQ + + M+ Q L + ++ + + + + K
Sbjct: 607 DARSMTDINNTIQQAKTQVSEIIAMAQQGRLEAQPGMTIRQSFEAKVNHELNNARDKAGK 666
Query: 609 FILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
S + + ++ + S + + Q +G Q + + F +TL H
Sbjct: 667 AAQDSLPSFNNVKQMVVAGSKGSYINISQMTACVGQQNVEGRRIPYGFQYRTL-----PH 721
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D + P A+ G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 722 FVK----DDHSPEAR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 776
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L DV++ YDGTVRN ++QF Y
Sbjct: 777 VKALEDVMVKYDGTVRN-AQGDVVQFCYG 804
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 170/636 (26%), Positives = 283/636 (44%), Gaps = 66/636 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P E E LQ V Y++ +
Sbjct: 167 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQL-LQFHVATYMDNDIA 225
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 226 GQPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 278
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI L +LV N D LR + G
Sbjct: 279 EVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAG 338
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 339 EISLQYGWKVERHIVDGDYIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTTPYNADF 398
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L V ++S + + D L + K+ + FL
Sbjct: 399 DGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQKNGPLMGIVQDTLCGIYKICRRDVFLT 458
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCG----- 492
K + ++ LP+PA+ K R RWT QI+ V+P G + G
Sbjct: 459 KEQIMNILLWVPDWDGVLPQPAILKPR--PRWTGKQIISLVIPTGLNFTMPSGAGWSPLN 516
Query: 493 -DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
+ ++ E++ G F + ++ + +V IF EKGPE + FF+ Q ++ L +G
Sbjct: 517 DNGLMVSGGELMYGLFTKKSVGVTPSAVVHIIFNEKGPEAAMSFFNGAQTVVNYWLLHNG 576
Query: 552 FSVSLEDFSLSKAALWNIQ----KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 607
FS+ + D + + I+ K+ + + S+ R++T NEL L N + VA
Sbjct: 577 FSIGIGDTIPDRNTIQQIENAVNKQKEEVASIT--RIATDNELEPLPGMNVRETFESKVA 634
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLGLQLS------------DRGKFYSKTL 653
+ + K+ + +S ++ Q A G G ++ GK
Sbjct: 635 RALNKARDDAGTVTEESLKDINNATQMARSGSKGSTINISQMTAXXXXXXXEGKRIPFGF 694
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 695 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 749
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 750 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 784
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 245/547 (44%), Gaps = 52/547 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++++GVP IA+ +TF E V NI+ LQ+LV+N
Sbjct: 69 RIRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNN 128
Query: 306 K------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
+ D L+ G L+ G V R I DGD V NR P+ HK S+
Sbjct: 129 GPNEHPGAKYVFKDNGDRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHKMSM 188
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ V T ++N + P +ADFDGD ++L PQS KAEV E+ V KQ++S
Sbjct: 189 MGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVSPQ 248
Query: 420 NGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWT 475
+ + D L ++ K+ FL + F + M+ +P P + K WT
Sbjct: 249 ANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKP--IPLWT 306
Query: 476 ALQILQSVLPP----GFDSC-----------GD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
QI+ ++P G+ S GD + LI+ E+L G + T+ S N I
Sbjct: 307 GKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSSQNGI 366
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QA 575
+ + E GPE FF+ Q ++ L +GFS+ + D + + I K I QA
Sbjct: 367 IHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGDTIADRNTMETINKAIASAKQA 426
Query: 576 LYSLLYHRMS---------TQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDS 622
+ ++ T E + + H+ + KS + + ++ S
Sbjct: 427 VNEVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVS 486
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q +G Q + GK HF + D P ++ G ++
Sbjct: 487 GSKGSFINISQMTACVG-QQNVEGKRIPFGFKYRTLPHFTK----DDQSPESR-GFVENS 540
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H++ RE ++ ++ +E G + + L+ L DV I YDGTVRN +
Sbjct: 541 YLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH- 599
Query: 743 IIQFDYA 749
IIQF Y
Sbjct: 600 IIQFCYG 606
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 177/666 (26%), Positives = 291/666 (43%), Gaps = 84/666 (12%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
IL LPVPP + P + G ++ + DL+ + + V + R + G P +E
Sbjct: 244 ILTVLPVPPPTVR-PSVVMGTTSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIRE 302
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM-------RTLFIR 253
ES LQ + Y++ D+ + Q N KA ++ R +
Sbjct: 303 FESL-LQYHIATYMD--------NDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMG 353
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS+R+VITGD R++E+GVP+ A+ +T+ E V +NI LQ LV N L
Sbjct: 354 KRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPGA 413
Query: 310 --TYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR + G L G V R + DGD + NR P+ HK S+ V V
Sbjct: 414 RYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPSLHKESMMGHRVRV 473
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQ ++AE+ EL V K ++S +
Sbjct: 474 MPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEESRAELAELTLVPKNIVSPQRNGPLMG 533
Query: 427 LATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ D L + K+ + FL K L ++ +P PA+ K R RWT Q++
Sbjct: 534 IVQDTLCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAIIKPR--PRWTGKQMISM 591
Query: 483 VLPPG----------------FDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
P G F D LI +++ G + T+ + ++ +IF
Sbjct: 592 AFPSGLNLLRVDKDGSPLSEKFSPLNDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFN 651
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----FSLSK--AALWNIQKEIQALYS 578
E GP+ ++FF Q ++ L +GFS+ + D +++K A+ N ++E++ + +
Sbjct: 652 EYGPDTCVKFFTGAQTIVGYWLLHNGFSIGIGDTIPDQLTINKIEEAVRNRKQEVEEITA 711
Query: 579 LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS------STLGYLID---------SK 623
+T+N L L N + V++ + + +T L D S
Sbjct: 712 -----SATENTLEALPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSG 766
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q +G Q S GK HF + +Y G ++ +
Sbjct: 767 SKGSAINISQMTALVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSY 820
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + I
Sbjct: 821 LRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-I 879
Query: 744 IQFDYA 749
IQF Y
Sbjct: 880 IQFIYG 885
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 170/635 (26%), Positives = 280/635 (44%), Gaps = 64/635 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P E E LQ V Y++ +
Sbjct: 186 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIA 244
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 245 GQPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 297
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKG 326
E+GVP +A+ +T+ E V +NI+ L +LV N + +DG G
Sbjct: 298 EVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDHPGAKYVIRADGERIDLRHHKRAG 357
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 358 EIPLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 417
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS +AEV +L V ++ + + D L + M ++ FL
Sbjct: 418 DGDEMNLHVPQSEETRAEVSQLCMVPLNIVPPQRNGPLMGIVQDTLCGIYKMCRRDVFLT 477
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC----------- 491
K + ++ +P+PA+ K R WT QIL V+P G +
Sbjct: 478 KEQVMNILLWVPDWDGVIPQPAIVKPR--PLWTGKQILSLVMPVGLNLLRVSNEGFSPLR 535
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D LI E++ G ++ T+ + +V IF EKGPE ++FF+ Q ++ L +G
Sbjct: 536 DDGLLISGGEIMYGLLNKKTVGASGGGVVHIIFNEKGPEAAMKFFNGAQTVVNYWLLHNG 595
Query: 552 FSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNELVDL--------------QI 595
FS+ + D +A + I+ + Q + + +T+NEL L +
Sbjct: 596 FSIGIGDTIPDRATIGKIEAAVNKQKDEVGVITKSATENELESLPGMNVRETFESKVSKA 655
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N+ R V + LK + + S S + + Q +G Q S GK
Sbjct: 656 LNNARDDAGRVTEESLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFK 714
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 715 YRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 769
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 770 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 803
>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1324
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 160/599 (26%), Positives = 276/599 (46%), Gaps = 93/599 (15%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-- 303
++R I K FS+R+VI+ D ++E+GVP EIA +T E VN +NI ++ELV
Sbjct: 326 RLRKNLIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMR 385
Query: 304 ---------------DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFI 348
+ L +LRE ++ L PG +V R +MDGD V
Sbjct: 386 GPDEYPGANAIRKGGVTPISLKILQRKGKDALREAAEQ---LEPGDIVERHLMDGDYVIF 442
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ HK S+ V V T +++P +C P +ADFDGD ++L PQ L EV EL
Sbjct: 443 NRQPSLHKLSMLGHRVKVLPGATFRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVREL 502
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSPLPRPALS 466
V+ +LS G + D + +L ++ KK F T+ L+ ++ LP PA+
Sbjct: 503 MGVKYNMLSPRTGGSIIGARQDFITALYMITKKDALFDKNEATRILSRAGITQLPEPAIK 562
Query: 467 KARCSARWTALQILQSVLPPGFD-----------------SC-GDRY-LIKKSEVLKGDF 507
R WT Q++ +LP + SC GD Y LI++ ++L G
Sbjct: 563 --RPKRLWTGKQLISMLLPKDLNFEGIAKSAVKASECKDPSCLGDGYVLIREGKLLSGVL 620
Query: 508 DRDTIPSVINEIVTSI---FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
D + + +++ +T I + G + +EF + L + + + G + S ++ + +
Sbjct: 621 DDNIVGTLVKGRLTLIDVLIRDYGEDVAIEFLNKLLKIASKEVLLYGITNSPKELMIPEE 680
Query: 565 ALWNIQKEIQALYSLLYHRMS----------------TQNELVDLQIENHIRH------- 601
A ++EI+ +YS + ++ T+ EL+ + E +
Sbjct: 681 A----KREIEEIYSNMKEEVTRLIRSRPITRKITIYRTKEELLRIMREEQMLEFDIVQTM 736
Query: 602 ------VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ-LSDRGKFY----- 649
V +++K+I S + + + + +++ + Q G +G Q + R F
Sbjct: 737 DSFWGKVSSVISKYIDPKSNVSIMAKTGARGSMANLAQIVGQVGQQKVKTRIGFVLTSGR 796
Query: 650 -SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
K + + S+F+R DL+ P A+ G +K + GL+P E + H++S+RE ++ R
Sbjct: 797 PRKGYKDRVLSYFQR---GDLS-PEAR-GFVKNSYVSGLNPAEFIFHAMSSRESLIDKGR 851
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV 767
+ G ++ + L+DV + YD TVR+ + IIQF + + LF EPV +
Sbjct: 852 RTEDSGYFYRRVANSLKDVYVSYDETVRDSMGH-IIQFKFGGDGYDPTKLF-RNEPVNL 908
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRRMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 173/645 (26%), Positives = 281/645 (43%), Gaps = 78/645 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 433
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 434 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 493
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFL 444
FDGD ++L PQS +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 494 FDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFI 553
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-- 494
DK + ++ + +P+PA+ K R RWT Q++ V+P +S G +
Sbjct: 554 DKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDN 611
Query: 495 ---------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + I S IV + E GP+ + F + +Q ++
Sbjct: 612 ADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTY 671
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIE 596
L +G S+ + D K + +Q I Q +T NEL V E
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFE 731
Query: 597 NHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
N + + + S+ + DS S + + Q +G Q+ + +
Sbjct: 732 NKVSMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRI 791
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++
Sbjct: 792 PFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLI 841
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 842 DTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 163/631 (25%), Positives = 277/631 (43%), Gaps = 56/631 (8%)
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRG 218
DG + S D L ++K + R + G P E E LQ Y++ + G
Sbjct: 172 DGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQL-LQFHXATYMDNDIAG 230
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
++ + R P K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 231 IPQALAKI--RSSCESYPVRGLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVP 288
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRP 332
+A +T+ ERV NI+ LQELV N D LR + FL+
Sbjct: 289 ISVAMNLTYPERVTPFNIHKLQELVRNGPNEYPGARYVVRDTGERIDLRYNKRTDAFLQH 348
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G +V R + DGD V NR P+ HK S+ + V + T ++N + P +ADFDGD ++
Sbjct: 349 GWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMN 408
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQ 451
+ PQS +AE+ ++ V Q++S + + D L + K + FLD Q
Sbjct: 409 MHIPQSEETRAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQN 468
Query: 452 LAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------SCGDRYL 496
+ ++ +P PA+ K + W+ QIL V+P G + D L
Sbjct: 469 ILLWVPDWDGHVPTPAIIKPK--PLWSGKQILSMVIPRGINIHXAPDPKSSNPVFDDGML 526
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I E+L G D+ T+ + ++ +F EKGP+ + F +Q ++ L+ +GFS+ +
Sbjct: 527 IDNGEILFGIMDKKTVGATQGGLIHVVFREKGPDATRQVFTGIQIVVNYWLYHNGFSIXI 586
Query: 557 ED-------FSLSKAALWNIQKEIQALYSLLYH-----------RMSTQNELVDLQIENH 598
D S + ++++ + YH R S +N +V+ ++
Sbjct: 587 GDTIAGPKVMSFITDKIAEKKQKVSEIIDDAYHDRLRAMPGMTIRESFEN-MVERELNRA 645
Query: 599 IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
K + + + + ++ + S + + Q + +G Q S GK
Sbjct: 646 RDESGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVG-QQSVEGKRIPFGFRHRTL 704
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P A+ G ++ + GL P E H++ E ++ ++ +E G + +
Sbjct: 705 PHFNK----DDFSPEAR-GFVENSYLRGLTPQEFFFHAMGGXEGLIDTAVKTAETGYIQR 759
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++ YDGTVRN + +IQF Y
Sbjct: 760 RLVKALEDVMVHYDGTVRNSLGD-LIQFIYG 789
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 171/694 (24%), Positives = 307/694 (44%), Gaps = 74/694 (10%)
Query: 108 QRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+R L + E+ + K I PE+ + + Y + ++ L VPP + + +
Sbjct: 203 ERRLLTPSEILSVFKHISPEDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTAR 262
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VR 217
DL+ + + + + R G+P E E+ LQ V Y++ ++
Sbjct: 263 GEDDLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQ 321
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
T + + + AR K ++R + K FS+R+VI+GD ++++GV
Sbjct: 322 KTGRPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGV 371
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFL 330
P IA+ +++ E V +NI+ L E V N D LR + G L
Sbjct: 372 PISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIAL 431
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
+ G V R +MD D V NR P+ HK S+ + V V T ++N + P +ADFDGD
Sbjct: 432 QYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDE 491
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFT 449
++L PQS +AE+ E+ +V Q++S + + + D L ++ M + F++ +
Sbjct: 492 MNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE--YD 549
Query: 450 QQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD------ 493
Q + M P +P PA+ K + WT Q+L +P G FD +
Sbjct: 550 QVMNMLYWIPVWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKD 607
Query: 494 -RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI E++ G D+ T+ S ++ ++ EKGP+ + F S+Q ++ L +GF
Sbjct: 608 SGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVNYWLLHNGF 667
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-----VDL---------QIE 596
S+ + D + + N+ I+ + + + QN+L + L ++
Sbjct: 668 SIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVL 727
Query: 597 NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 728 NQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFAD 786
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 787 RTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 841
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 842 IQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 874
Score = 43.9 bits (102), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ +I ++ L +P LG KC++C + +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEFPETIDQTTKRPREGGLNDPRLGSIDRNFKCQTC-SEDMT 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 1002
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/543 (27%), Positives = 245/543 (45%), Gaps = 48/543 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 256 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 315
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR HK S
Sbjct: 316 GPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIXFNRHHAXHKES 375
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 376 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 435
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ D L + K+ + FL+K + ++ LP+PA+ K R +W
Sbjct: 436 QRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPR--PKW 493
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+PPG + S G D + E++ G F++ ++ + I+ I
Sbjct: 494 TGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFNKKSVGATSGGIIHII 553
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + +
Sbjct: 554 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEI 613
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKS---------------STLGYLIDSKSDS 626
R +T+N+L L N + V+K + K+ + + S S
Sbjct: 614 TRSATENDLEPLPGMNVRETFESKVSKALNKARDDAGTVTEEGLKDLNNATQMARSGSKG 673
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q S GK HF + +Y G ++ + G
Sbjct: 674 STINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRG 727
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 728 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQF 786
Query: 747 DYA 749
Y
Sbjct: 787 VYG 789
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 248/544 (45%), Gaps = 49/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ ERV +N +L ELV N
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 306 K------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
D L+ + L+PG +V R + DGD + NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 468
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ + + D T ++N + P +ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 420 NGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWT 475
+ + D L + K + LD QQ+ ++ +P P + K + W+
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPK--PYWS 586
Query: 476 ALQILQSVLPPGFDSCGDR-------------YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
QIL +P G + D+ I+ E++ G ++ + + ++
Sbjct: 587 GKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHI 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL-- 580
IF EKGP FF +Q ++ L +GFS+ + D KA +I + I A + +
Sbjct: 647 IFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAVMD 706
Query: 581 ---YHRMS--------TQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKSD 625
Y R T E + + + + V S + + ++ S S
Sbjct: 707 YIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSK 766
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q S GK HF + D P ++ G ++ +
Sbjct: 767 GSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFTK----DDFTPESR-GFVENSYLR 820
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL E H+++ RE ++ ++ +E G + + L+ L DV++CYDGTVRN +N++IQ
Sbjct: 821 GLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNNVIQ 879
Query: 746 FDYA 749
F Y
Sbjct: 880 FAYG 883
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ---------LANPFLGLPLEFGKCESCGTSEPGK 67
++FG+ + +EI S+ I L++P LG KC++CG +
Sbjct: 22 VQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGH-QE 80
Query: 68 CEGHFGYIELPIPIYHPSHISELK--LTMYAFQL-QIKNDGVAQRLLSSCCEV-----KE 119
C GHFG+I+L P++H ++ ++K L F ++K D V + + K
Sbjct: 81 CPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADTVTDPVFDQIVKATRGSKKR 140
Query: 120 MLKRIPEETRKKLAGKGYFPQD 141
+R+ E KK+ + P+D
Sbjct: 141 RFQRVWEYCSKKMICEADDPKD 162
>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1403
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 197/726 (27%), Positives = 318/726 (43%), Gaps = 90/726 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V ++ KRI +E + L + F + + YI +Y+ VPP + DG S DL++
Sbjct: 218 KVLDLFKRISDEDCELLGLRPEFARPEEYIWQYISVPPVAIRPSVAQDGASN-EDDLTVK 276
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
+ + V I + G P + E + + LQL++ Y+ E+ G R G
Sbjct: 277 LTEIVFTNALIKQGLAKGAPTAQFME-QWDFLQLSIAMYINSELPGVPSQMGQKPIR-GF 334
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q K + R K FS R+VI+ D R++E+ VP +A+ +T+ ERV
Sbjct: 335 CQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVT 390
Query: 293 VHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMD 342
HN+ L++ + N C + + GSS + L+ G++ LR G +V R I+D
Sbjct: 391 QHNLEILKKAIRNG-CDVHPGANYVTAGSSGFKKFLKFGNRNAIADGLRVGDIVERHIVD 449
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ V V + ++N +CGP +ADFDGD ++L PQ+ A+
Sbjct: 450 GDIVLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEAR 509
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQLAMFALSPL 460
E LEL SV+ L++ NG + D + + ++ ++ F D+ FTQ + A + L
Sbjct: 510 TEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDRFFDRCQFTQICSYLADADL 569
Query: 461 ----PRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------- 491
P P + K + WT QI ++ P S C
Sbjct: 570 QIDIPPPTILKPQ--RLWTGKQIFNVLMRPNRHSRVRVNVESRCNKVEKPDPKAYPRMTP 627
Query: 492 ------GDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLL 543
D +L I SE++ G D+ T+ S + I I + GP E L L
Sbjct: 628 VDDMSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAATAMGRLAKLC 687
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKE--IQALYS------------LLYHRMST-QN 588
L GFS+ + D + + QKE +Q Y+ LL ++ Q
Sbjct: 688 ARYLANYGFSLGIND--VIPGPILAAQKESMVQKAYAECDDLIARAKKGLLENKPGCDQE 745
Query: 589 ELVDLQIENHIRHVKMLVAKFILKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLSD 644
+ ++ I + + +V+ V + +K + + S S +V V Q +G Q+
Sbjct: 746 QTLEAMISSVLSNVREKVGEICMKELSRHNAPLIMATSGSKGSVINVSQMVACVGQQIIA 805
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
G + HF P P +K G ++ F+ GL P E + H+IS RE +V
Sbjct: 806 -GHRVPDGFQDRSLPHF----PKKSREPPSK-GFVRNSFYTGLTPTEFLFHAISGREGLV 859
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEP 764
++ +E G + + LM L D+V YD +VRN ++QF Y + L +P
Sbjct: 860 DTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV-GGVVQFRYGDDGLDPACLEGDAQP 918
Query: 765 VGVLAA 770
V L A
Sbjct: 919 VEYLRA 924
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 184/717 (25%), Positives = 316/717 (44%), Gaps = 94/717 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+ E+LKRI +E + L G+ P+ G I+ LPVPP + + D V+ DL
Sbjct: 236 KAHEILKRISDEDCRAL---GFNPEQGRPDWMIITVLPVPPMTVRPSVVMDSVARGIDDL 292
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ + + + + G+P +E + LQ V Y E+ G A + +
Sbjct: 293 THKLADIIKANHNLRQQELRGSPAHIMEEY-TKLLQYHVATYADNEIPGVATAQQK---- 347
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + + ++ ++R + K FS+R+VIT D ++E+GVP IA +
Sbjct: 348 ---SGRPLKSIRQRMKGKEGRIRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALNL 404
Query: 286 TFEERVNVHNINYLQELVDNKLC-------LTYSDGSS---SYSLREGSKGHTFLRPGQV 335
TF E V +NI+ + ELV + DG+ +S +G + H L PG
Sbjct: 405 TFPEMVTPYNIDRMYELVRRGALEHPGAKYVIRDDGTRIDLRFSRTQGQEIH--LEPGYR 462
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I+DGD V NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 463 VERHIVDGDPVIFNRQPSLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNLHV 522
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAM 454
PQ+L +AEV E+ SV +Q+L+ + + D L S K+ + F++ QL M
Sbjct: 523 PQNLETRAEVTEIMSVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIEMDLMMQLLM 582
Query: 455 FA---LSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGD------------- 493
+ +P+PA+ K R WT QI ++P + S D
Sbjct: 583 WLPGWTGHVPQPAILKPR--PMWTGKQIFSMIIPAEVNLTRTHSTHDDEEDKGNYVHMSP 640
Query: 494 ---RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ LI+K +L G + T+ ++ +F E G E FF++ Q ++ L +
Sbjct: 641 SDTKVLIEKGRLLSGIICKKTLGPSAGGLIHILFKEWGHEVARNFFNACQRVVNYWLMWE 700
Query: 551 GFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRM-----STQNELVDLQIEN 597
G S+ + D A + ++ I + + S + R+ +T E + ++
Sbjct: 701 GHSIGIGDAVADDATMMQVEDAIRRAKEDVKKVVESAQHGRLESTPGNTLRETFENEVNK 760
Query: 598 HIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----F 648
++ + + K + S + + + S +V + Q +G Q + GK F
Sbjct: 761 YLNNAREDAGKKVQDSLGDFNNFRLMAVAGSKGSVLNISQVIACVG-QQNVEGKRIPFGF 819
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+TL HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 820 RFRTL-----PHFVKD-----DYGPESRGFVENSYLKGLTPSEFFFHAMGGREGVIDTAV 869
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
SE G + + L+ + DV++ YDGTVRN + +IQF Y + L +P+
Sbjct: 870 KTSETGYIQRRLVKCMEDVMVKYDGTVRNSLGD-VIQFVYGEDGLDGAHLEFGNQPI 925
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTM 94
L++P +G KC++C T G C GHFG+IEL P+++ + +++++ T+
Sbjct: 66 LSDPRMGTVERQFKCQTC-TGSMGDCPGHFGHIELVKPVFNVTMMTKIQKTL 116
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 166/625 (26%), Positives = 278/625 (44%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 199 DLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEAL-LQFHVATYMDNDIAGQPQALQK-- 255
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 256 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRSIAR 310
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 311 TLTYPETVTPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 370
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 371 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 430
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 431 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLW 490
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIKKSE 501
+P+PA+ K R + WT QI+ V+P G + + D + E
Sbjct: 491 VPDWDGVIPQPAILKPRPT--WTGKQIVSLVIPKGLNLIRGSEEGLSPANDDGLFVHGGE 548
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G F + ++ + I+ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 549 LMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 608
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI------LKS 613
+ + I+ + + + R +T+NEL L N + V+K + +
Sbjct: 609 DRNTIRQIENAVNRQKADVAEITRSATENELEPLPGMNVRETFESKVSKALNAARDEAGA 668
Query: 614 STLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
T L D S S + + Q +G Q S GK HF +
Sbjct: 669 ETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 727
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 728 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 782
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 783 EDVMAKYDGTVRNSLGD-IVQFVYG 806
>gi|295668637|ref|XP_002794867.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226285560|gb|EEH41126.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1425
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 184/693 (26%), Positives = 296/693 (42%), Gaps = 90/693 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P E R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 221 ELLGLNPAEARPEV----------FLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 269
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 270 IQSNMNLKNALNKGAPVQTIIECWDHMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 325
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FSSR+VI+ D R++E+ VP +A +T+ E+V +N +
Sbjct: 326 -RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKD 384
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ V N T + ++Y L++ L+ G +V R I DGD
Sbjct: 385 KLRQCVRNG---TKTWPGANYVLKKSQNFKMNLKFGNPNLIANELEEGDIVERHIEDGDI 441
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 442 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 501
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP----- 459
+EL V+ L++ NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 502 MELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNVFYDRKTFTQVCLYMLLPGTRFD 561
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP P++ K + WT Q+ ++ P DS DR+
Sbjct: 562 LPPPSILKPQ--MLWTGKQVFNILMRPNKDSPVLVNLDAACREFKAPKGTPRDLDANDRW 619
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SEV+ G D+ TI S + V + + GP E + L L + GFS
Sbjct: 620 LCIRNSEVMCGVMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFS 679
Query: 554 VSLEDF-----------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIR 600
+ + D L + A + IQ S + +E + ++ I +
Sbjct: 680 IGITDVYPGDRLLEEKKELVEHAYVQCDEVIQKFKSGNLEKAPGCDEQMTMENIISGILS 739
Query: 601 HVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
V+ + +T + S S + V Q +G Q+ G+ +
Sbjct: 740 KVRQQAGDLCISELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIG-GQRVQDGFQDR 798
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF P P AK G ++ FF GL P E + H+IS RE +V ++ +E G +
Sbjct: 799 TLPHF----PKHARQPPAK-GFVQNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYM 853
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ LM L D+ YDGTVRN S+SI+QF Y
Sbjct: 854 SRRLMKSLEDLSTRYDGTVRN-SSSSIVQFQYG 885
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 169/619 (27%), Positives = 275/619 (44%), Gaps = 50/619 (8%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E LQ V Y++ + G ++ +
Sbjct: 196 DLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIAGQPQALQK-- 252
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 253 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 307
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 308 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKV 367
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 368 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 427
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 428 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLW 487
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSE 501
+P+PA+ K A WT QIL V+P G + D LI E
Sbjct: 488 VPDWDGVIPQPAIVKP--LAMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGE 545
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + T+ + ++ +F EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 546 LMYGLLAKKTVGASGGGLIHIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 605
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYL 619
+ + I+ + Q L R +T+NEL L N + V+K + K+
Sbjct: 606 DRHTIQQIENAVNNQKAEVLEITRSATENELESLPGMNVRETFESKVSKALNKARDDAGT 665
Query: 620 IDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLN 670
+ KS ++ Q A G G + +S + VE F R P +
Sbjct: 666 VTEKSLKDLNNAPQMARSGSKGSTINISQMTAVVGQQSVEAKRIPFGFKYRTLPHFTKDD 725
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 726 YSPESKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 785
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN + I+QF Y
Sbjct: 786 YDGTVRNSLGD-IVQFVYG 803
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 209/874 (23%), Positives = 363/874 (41%), Gaps = 162/874 (18%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGT 62
++ ++FG+ + EI S+ C I A L++P +G CE+ G
Sbjct: 16 RVKAVQFGVLSPDEIRKMSV--CEIETAETYEKGRPKRGGLSDPRMGTMDRAMACETDGM 73
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHI------------SELKLTM-------YAFQLQIKN 103
+ G+FG++EL P++H I S KL + +A ++IKN
Sbjct: 74 NS-TDTPGYFGHLELAKPVFHYGFIKNVVSVLRCVGFSSSKLMIDKNEDPKFAQIMRIKN 132
Query: 104 DGVAQRLLSSCCEVK---------------EMLKRIPEETRKKLAGKGYFPQDG------ 142
+ R + C+ K E +K E KKL Y P G
Sbjct: 133 NKQRLRKFTDACKTKTICPATGTPQPQYRLEGMKITAE--FKKLEEDDYLPDGGERKQVI 190
Query: 143 -------------------------------YILEYLPVPPNCLSVPDISDGVSTMS-SD 170
++L+ LPVPP+ + P ++ ST S D
Sbjct: 191 TPERALNILKNISDEDCRILGFDPEHAHPSWFVLQALPVPPHPVR-PSVAFDSSTRSEDD 249
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSR 224
L++ +++ V + R ++G P QE + LQ + ++ + R +S R
Sbjct: 250 LTVKLMEIVRTNKNLQRQEQNGAPQHVVQEF-TELLQYHIMTFMDNTVAGQPRALTRSGR 308
Query: 225 DVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
+ + +S+ K ++R + K FS+R+VIT D ++E+GVP+ IA
Sbjct: 309 PIKS---ISE----RLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALN 361
Query: 285 ITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQ 334
+T+ E V +NI L++LV+N + + Y +RE + L G
Sbjct: 362 MTYPETVTPYNIERLRKLVENGPHPPPGETGAKYIIREDGQRLDLRFMKRESDKRLEYGY 421
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
V R +++GD V NR P+ HK S+ V + T ++N + P +ADFDGD +++
Sbjct: 422 KVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMH 481
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLA 453
PQS+ +AEV EL V K ++S + + D LL+ +++ K+ F+ K +
Sbjct: 482 LPQSMETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLACRLITKRDTFITKDVFMNIL 541
Query: 454 MFALS---PLPRPALSKARCSARWTALQILQSVLPP------------------GFDSCG 492
M+ + +P+PA+ K WT Q+ P D G
Sbjct: 542 MWHTNWDGKVPKPAIIKPE--PLWTGKQVFSMFTPDVNVIRTSAWARDADDMDFSVDDVG 599
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
R +++ E++ G + ++ S ++ +I+ E GP +F +Q LL L GF
Sbjct: 600 VR--VERGELITGIMCKKSMGSGGGGLIHTIWEEWGPTAARDFVSQVQWLLNYWLLHYGF 657
Query: 553 SVSLEDFSLSKAALWNIQ----------KEIQALYSL----LYHRMSTQNELVDL--QIE 596
++ + D + I KE+ A+Y + M+ Q QI
Sbjct: 658 TIGISDTIADDRTMQTINDTITKAKSDVKEVVAIYQRGELEMQPGMTAQQSFEQKVNQIL 717
Query: 597 NHIRHVKMLVAKFIL-KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ L ++ + + + S + + Q +G Q + GK +
Sbjct: 718 NKARDNAGNSAQTSLDDTNNVKMTVTAGSKGSFLNISQMIACVG-QQNVEGKRIPFGFTD 776
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + DL P A+ G ++ + GL P E H++ RE ++ ++ SE G
Sbjct: 777 RSLPHFAK---NDLG-PEAR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 831
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 832 IQRRLVKAMEDIIVKYDGTVRN-SAGDVIQFLYG 864
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 167/625 (26%), Positives = 281/625 (44%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P S++ E + LQ V Y++ + G ++ +
Sbjct: 209 DLTYKLGDIIRANGNVRRCETEGSPAHISKDFE-DLLQFHVATYMDNDIAGQPQALQK-- 265
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 266 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 320
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 321 TLTYPETVAPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEIMLQYGWKV 380
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ +K S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 381 ERHIVDGDFIIFNRQPSLYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 440
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AEV +L V ++S + + D L + M ++ FL K + ++
Sbjct: 441 QSEETRAEVSQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLW 500
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIKKSE 501
+P+PA+ K R +WT QI+ V+P G + + D + E
Sbjct: 501 VPDWDGVIPQPAILKPR--PKWTGKQIISLVIPAGLNLIRPSAEGLSPANDDGLFVHGGE 558
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G F + TI + I+ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 559 LMYGLFVKKTIGASGGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 618
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFILK------S 613
++ + I+ + + + + +T+N L L N + V+K + K +
Sbjct: 619 DRSTIQKIENAVNKQKADVADITQSATENTLESLPGMNVRETFESKVSKALNKARDDAGT 678
Query: 614 STLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+T L D S S + + Q +G Q S GK HF +
Sbjct: 679 ATEDSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 737
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 738 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 792
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 793 EDVMAKYDGTVRNSLGD-IVQFVYG 816
>gi|115390328|ref|XP_001212669.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
terreus NIH2624]
gi|114195065|gb|EAU36765.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
terreus NIH2624]
Length = 1450
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 184/695 (26%), Positives = 301/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPREARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + S G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNSLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++G+ TFL+ G VV R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYLMKKGADYKTFLKYGNLNMIADQIQEGDVVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ QL ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQLCLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACREFKQPKDGRPKDLDPKDG 651
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SE++ G D+ TI S + V I + GP E + L L GF
Sbjct: 652 WLVIRNSEMMCGVMDKSTIGSGKKDNVFYIMLRDYGPAAAAEGMNRLSRLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S+ L + ++ Y+ + ++ T + + ++ Q+ +
Sbjct: 712 SIGITDVYPSQKLLQSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 771
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S SI+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSKYDDTVRN-SSGSIVQFQYG 918
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 173/645 (26%), Positives = 280/645 (43%), Gaps = 78/645 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 433
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 434 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 493
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFL 444
FDGD ++L PQS +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 494 FDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFI 553
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDSCGDR 494
DK + ++ + +P+PA+ K R RWT Q++ V+P P + D
Sbjct: 554 DKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSAGQDN 611
Query: 495 ---------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + I S IV + E GP+ + F + +Q ++
Sbjct: 612 ADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTY 671
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIE 596
L +G S+ + D K + +Q I Q +T NEL V E
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFE 731
Query: 597 NHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
N + + + S+ + DS S + + Q +G Q+ + +
Sbjct: 732 NKVSMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRI 791
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++
Sbjct: 792 PFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLI 841
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 842 DTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 171/626 (27%), Positives = 276/626 (44%), Gaps = 63/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +Q+ E LQ V Y+ + R KS
Sbjct: 274 DLTYKLGDIIRANSNVKQAIREGSPAHIAQDFEQL-LQYHVATYMDNDIAGQPRALQKSG 332
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 333 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIAR 385
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L ELV N + +DG+ G L G V
Sbjct: 386 TLTYPETVTPYNIGRLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKV 445
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++ GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 446 ERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 505
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D L + K+ + FL K + ++
Sbjct: 506 QSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLW 565
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLP------PGFDSCGDR------YLIKKS 500
+ +P PA+ + R RWT QI+ +P DS D LI+
Sbjct: 566 VPNWDGIIPPPAIVRPR--PRWTGKQIMSLAVPNIVSLHSAPDSKEDNPLKDEGLLIQSG 623
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + I + IV ++ E GPE ++F + +Q ++ L +GFS+ + D
Sbjct: 624 QIMYGLLSKKNIGAASGGIVHIVYNEHGPEAAMKFLNGVQQVVNYWLLHNGFSIGIGDTI 683
Query: 561 LSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKFI------LK 612
K + +Q I + + Y R +T NEL L N + V+K +
Sbjct: 684 PDKVTIEKVQVHIDEHKAEVEEYTRQATANELEPLPGMNIRETFESKVSKALNTARDKAG 743
Query: 613 SSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
++T L D S S + + Q +G Q+ + GK HF +
Sbjct: 744 TTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQQIVE-GKRIPFGFKYRTLPHFTK 802
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 803 ----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 857
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV YDGTVRN + I+QF Y
Sbjct: 858 LEDVSAKYDGTVRNSLGD-ILQFLYG 882
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL +EI S+ C + L +P LG KC++C + G
Sbjct: 19 IQFGLMAPEEIKNMSVCHCVYPETMDETRTKPRDGGLNDPLLGSIDRQFKCKTCSQAM-G 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 200/785 (25%), Positives = 330/785 (42%), Gaps = 104/785 (13%)
Query: 104 DGVAQ-RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDIS 161
+GVA+ + S +V ++LK+I +E + F + + I+ +PVPP +
Sbjct: 132 EGVAEGKQPISVTQVLQVLKKISDEDALAMGLNVQFARPEWLIISVMPVPPLAVRPSIQM 191
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
D DL+ + + V + G P +E E LQ V ++ E+ G
Sbjct: 192 DATRQSEDDLTYKLNDIIKANVRVQSCEVEGAPLHIIEEFEKL-LQFHVATFMNNEISGL 250
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VITGD ++++
Sbjct: 251 PQALQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDIDQV 303
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF 329
GVP IA+ +T+ E V +NI LQE+V N D LR +G
Sbjct: 304 GVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDI 363
Query: 330 -LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
LR G V R ++D D V NR P+ HK S+ V V T ++N + P +ADFDG
Sbjct: 364 PLRIGYRVERHMLDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDG 423
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA 447
D ++L PQS +AEV E+ V KQ++S + + + D L ++ + K+ L
Sbjct: 424 DEMNLHLPQSEETRAEVTEICMVPKQIVSPQSNMPVMGIVQDTLCAINIFTKRDTLLQYD 483
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD--------------- 489
F L M +P P + K + W+ QI V+P G +
Sbjct: 484 FVMNLLMTIPDWDGIVPTPCILKPQ--PLWSGKQIYSMVIPKGVNCHRYNSTHPDNEYTW 541
Query: 490 -SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
S GD R +I+ E+L G + T+ +V + ++ I E GP+ +FF Q L+
Sbjct: 542 CSPGDTRIIIENGELLSGALCKRTVGAVDSGLIHVIRNELGPDYAKKFFGGTQKLVNYWF 601
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 607
GFSV + D + + + I+ Y + +EL+ E+ + + +
Sbjct: 602 LQTGFSVGIGDTIADDSTMQTVGDIIRECYMRV-------DELIRDAQEDRLERLPGMTL 654
Query: 608 KFILKSSTLGYL------------------------IDSKSDSAVSKVVQQAGFLGLQLS 643
K +S G L + S S + V Q +G Q +
Sbjct: 655 KETFESKVNGELNRARDQAGKTVQNRLKECNNVRRMVVSGSKGSYINVSQMTASVGQQ-N 713
Query: 644 DRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
GK F ++TL HF + +Y G ++ + GL P E H++
Sbjct: 714 VEGKRIPFGFKNRTL-----PHFSKD-----DYSPQSRGFVENSYLRGLTPQEFYFHAMG 763
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
RE ++ ++ +E G + + L+ L D+++ YDGTVRN SII F Y + + L
Sbjct: 764 GREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSLG-SIIDFVYGEDGMDACFL 822
Query: 759 FPAGEPVGVLAATAMSNPAYKAVLDSSP---SSNNSWELMKEI-------LLCRVSFNND 808
++ N V+DSS S + + ++K I LL FN
Sbjct: 823 ETQNLQTLTISDNRFENMYRVDVMDSSKGFSSDSLDFSILKNIEANDSVQLLLDEEFNQL 882
Query: 809 PIDRR 813
+DR+
Sbjct: 883 TLDRK 887
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/619 (26%), Positives = 281/619 (45%), Gaps = 50/619 (8%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 198 DLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEAL-LQFHVATYMDNDIAGQPQALQK-- 254
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 255 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 309
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 310 TLTYPETVTPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 369
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + +NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 370 ERHIVDGDFIILNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 429
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 430 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLW 489
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIKKSE 501
+P+PA+ K R +WT QI+ V+P G + + + + E
Sbjct: 490 VPDWDGVIPQPAIIKPR--PKWTGKQIISLVIPKGLNLIRSSEEGLSPANDEGLFVHGGE 547
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G F + ++ + I+ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 548 LMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 607
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYL 619
++ + I+ + + + R +T+NEL L N + V+K + +
Sbjct: 608 DRSTIQQIENAVNKQKADVAEITRSATENELEPLPGMNVRETFESRVSKALNAARDEAGA 667
Query: 620 IDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLN 670
+ KS ++ +Q A G G + +S + VE F R P +
Sbjct: 668 VTEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 727
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L V+
Sbjct: 728 YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEGVMAK 787
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN + ++QF Y
Sbjct: 788 YDGTVRNSLGD-VVQFVYG 805
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 164/628 (26%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S+ + + + D L + K+ + F++ F Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFIE--FDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + WT Q+L + +P G FD + L+
Sbjct: 551 YWVPDWDGVIPTPAVLKPK--PLWTGKQVLSAAIPKGIHLQRFDEGTTLLSPKDNGMLVI 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKIVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGQTIKEITETIAEAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L + + ++ + S + + Q + +G Q S GK V+ HF
Sbjct: 729 AGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N +IQF Y
Sbjct: 843 KALEDIMVHYDGTTRNSLGN-VIQFIYG 869
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/631 (24%), Positives = 274/631 (43%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRG 218
DL+ + + + + + GTP F ND+ GQ ++
Sbjct: 276 DLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQFHCATFMDNDI---AGQPQAMQS 332
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
+ + + V AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 333 SGRPIKSVRARL----------KGKEGRLRGNLMGKRVNFSARTVITGDPLLELDEVGVP 382
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRP 332
IA+ +T+ ERV +N +L ELV N D L+ + L+P
Sbjct: 383 KSIARNLTYPERVTPYNRAWLSELVRNGPNDYPGAKYVIRDTGERIDLKYNRRSDMALQP 442
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G +V R + DGD + NR P+ HK S+ + + + D T ++N + P +ADFDGD ++
Sbjct: 443 GWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMN 502
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQ 451
L PQS +AE+ ++ V +Q++S + + D L + K + LD QQ
Sbjct: 503 LHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQ 562
Query: 452 LAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR-------------Y 495
+ ++ +P P + K + W+ QIL +P G + D+
Sbjct: 563 VLLWVADWDGVVPMPCILKPK--PYWSGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGV 620
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ E++ G ++ + + ++ IF EKGP FF +Q ++ L +GFS+
Sbjct: 621 YIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIG 680
Query: 556 LEDFSLSKAALWNIQKEIQALYSLL-----YHRMS--------TQNELVDLQIENHIRHV 602
+ D KA +I + I A + + Y R T E + + +
Sbjct: 681 IGDTVADKATTDSINQTITAAKAAVMDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQA 740
Query: 603 KMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
+ V S + + ++ + S + + Q + +G Q S GK
Sbjct: 741 RDDVGNHAEASLPDFNAVKQMVVAGSKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSL 799
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P ++ G ++ + GL E H+++ RE ++ ++ +E G + +
Sbjct: 800 PHFTK----DDFTPESR-GFVENSYLRGLTAQEFFFHAMAGREGLIDTAVKTAETGYIQR 854
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++CYDGTVRN +N++IQF Y
Sbjct: 855 RLVKALEDVMVCYDGTVRN-STNNVIQFAYG 884
Score = 44.7 bits (104), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 17 IRFGLATQKEICTASISDCSIS-----------HASQLANPFLGLPLEFGKCESCGTSEP 65
++FG+ + +EI +IS C I L++P LG KC++CG
Sbjct: 22 VQFGILSPEEI--RAISVCKIEVPEIKDESGKPRIGGLSDPRLGTLDRNYKCQTCGEGH- 78
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+I+L P++H ++ ++K
Sbjct: 79 QECPGHFGHIDLAKPVFHIGYLGKVK 104
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 163/637 (25%), Positives = 281/637 (44%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + ++ K IQ + Q ++D Q
Sbjct: 666 IGDTIADAQTMRDVNKTIQEA------KQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVS 719
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 720 RVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFG 778
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 779 FGDRSLPHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 833
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 834 TGYIPRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
Score = 43.5 bits (101), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ L +P LG +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 180/692 (26%), Positives = 298/692 (43%), Gaps = 72/692 (10%)
Query: 113 SCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V +LKRI +E L Y D IL+ LP+PP + + D S DL
Sbjct: 213 SAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDL 272
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRD 225
+ + + + R R+G P E + LQ V Y + R T +S R
Sbjct: 273 THQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHVATYFDNELPGQPRATQRSGRP 331
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
+ + S KA ++R + K FS+R+VIT D ++E+GVP+ IA +
Sbjct: 332 IKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNL 384
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V +NI L+ELV+ + Y +RE + L G
Sbjct: 385 TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYK 444
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 445 VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 504
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQS +AEVLEL V K ++S + + + D LL + + K+ F++K + M
Sbjct: 505 PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 564
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRY 495
+ +P PA+ K R WT Q+ ++P GF + GD
Sbjct: 565 WWEDFDGKIPAPAILKPR--PLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQ 622
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L +GFS+
Sbjct: 623 VRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSI 682
Query: 555 SLEDFSLSKAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV--- 602
+ D A + I + E++ L R + + EN + V
Sbjct: 683 GIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNK 742
Query: 603 -----KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + +S+ L ++ + S + + Q +G Q + GK ++
Sbjct: 743 ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFIDRT 801
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G +
Sbjct: 802 LPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 856
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 857 RRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ--------LANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S+ S ++ L++P LG KCE+C T+ +C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTIDRKMKCETC-TANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P++H
Sbjct: 77 PGHFGHLELAKPMFH 91
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 163/637 (25%), Positives = 281/637 (44%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + ++ K IQ + Q ++D Q
Sbjct: 666 IGDTIADAQTMRDVNKTIQEA------KQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVS 719
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 720 RVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFG 778
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 779 FGDRSLPHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 833
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 834 TGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
Score = 43.9 bits (102), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ L +P LG +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/630 (25%), Positives = 282/630 (44%), Gaps = 71/630 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E ES LQ V Y++ + G ++ +
Sbjct: 220 DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-LQFHVATYMDNDIAGQPQALQK-- 276
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 277 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 331
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L ELV N D LR + G L+ G V
Sbjct: 332 TLTYPETVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIVLQYGWKV 391
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 392 ERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 451
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE++ + +V Q++S + + + D L ++ M + F+D + Q + +
Sbjct: 452 QSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFID--YDQMMNIL 509
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRY--------------L 496
P +P+P + K + WT Q+L +P G RY +
Sbjct: 510 YWIPGWNGVVPQPTILKPK--PLWTGKQMLSMAIPKGIHM--QRYDEGTTLLSPNDNGMM 565
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
+ +++ G D+ T+ + ++ ++ EKGP+ E F SLQ ++ +GFS+ +
Sbjct: 566 VVDGQIMFGVVDKKTVGATNGGLIHTVMREKGPKVCSELFGSLQKVVNFWFLHNGFSIGI 625
Query: 557 ED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHIR 600
D +L+K + ++ E Q H M+ + D I N R
Sbjct: 626 GDTIADASTMKEITDAIALAKEKVDDVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEAR 685
Query: 601 HVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
A+ LKS + + ++ + S + + Q + +G Q S GK + +
Sbjct: 686 DKAGRSAEVNLKSLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLP 744
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 745 HFAKD-----DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRR 799
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN N IIQF Y
Sbjct: 800 LVKALEDIMVHYDGTTRNSLGN-IIQFIYG 828
Score = 43.9 bits (102), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L +P LG KC++CG +C GHFG+IEL P++H IS++K
Sbjct: 12 LNDPRLGSIDRNFKCQTCGEGM-NECPGHFGHIELAKPVFHIGFISKIK 59
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 177/657 (26%), Positives = 287/657 (43%), Gaps = 69/657 (10%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
IL LPVPP + + D DL+ + V + G P E +
Sbjct: 161 ILTLLPVPPPHVRTSIMMDATQRGEDDLTHNLAVIVKNNTALRNLEGHGAPAHRLAE-QI 219
Query: 204 NDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
LQ V Y+ R KS R + + +SQ K ++R + K
Sbjct: 220 FLLQFHVATYMNNDLPGMPRAAQKSGRPLKS---ISQ----RLKGKEGRLRGNLMGKRVD 272
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLT 310
FS+R+VIT D R++++GVPF IA+ +TF E V +NI +Q+LV+N +
Sbjct: 273 FSARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPDAKYIQ 332
Query: 311 YSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
DG ++ L G V R I +GD + NR P+ HK S+ + V
Sbjct: 333 RDDGYQVNLAYVRNRADVQLEIGYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYS 392
Query: 371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
T ++N + P +ADFDGD ++L PQ+ A +AEV+EL V + ++S + + D
Sbjct: 393 TFRLNLSVTSPYNADFDGDEMNLHVPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQD 452
Query: 431 ALLS-LKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP- 485
LL + ++ FL + T L + +P PA+ K WT Q+ +LP
Sbjct: 453 TLLGCMLFTYRDTFLRRDVTMSLLLHVEGWDGVIPPPAIIKP--EPLWTGKQLFSLLLPD 510
Query: 486 ----------PGFDSC----GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPE 530
P +S GD R LI E++ G D+ T+ S N ++ + EKGPE
Sbjct: 511 VNLVRYCNTHPDDESTDISPGDTRVLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGPE 570
Query: 531 EVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---QALYSLLYHRMSTQ 587
++Q L+ + G S+ + D N++ I QA + L R + +
Sbjct: 571 RTCVLISAIQVLVNHYVIMRGQSIGIGDTIADAHTDANVRATITGAQAEVTQL-ERRAQE 629
Query: 588 NELVDLQIENHIRHVKMLVAKF---------------ILKSSTLGYLIDSKSDSAVSKVV 632
EL L ++ + ++ V K +LKS+ + ++ + S + +
Sbjct: 630 GELTLLPGKSMMESFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGSFINIS 689
Query: 633 QQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEE 692
Q +G Q + GK S HF MD P ++ G ++ + GL P E
Sbjct: 690 QICACVG-QQNVEGKRISYGFRRRTLPHFR----MDDLGPESR-GFVENSYLIGLRPSEF 743
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE ++ ++ +E G + + L+ + DV++ YDGTVRN +S+IQF Y
Sbjct: 744 FFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMVKYDGTVRN-SRSSVIQFLYG 799
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 174/646 (26%), Positives = 283/646 (43%), Gaps = 80/646 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 VGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGS 324
+E+GVP IA+ +T+ E V +NI L +LV+N K L +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVLR-ADGTRIDLRHHRR 432
Query: 325 KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +A
Sbjct: 433 AAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNA 492
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYF 443
DFDGD ++L PQ+ +AEV EL V ++S+ + + D+L + K+ + F
Sbjct: 493 DFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSTQKNGPLMGIVQDSLAGAYKICRRDTF 552
Query: 444 LDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR- 494
+DK + ++ + +P+PA+ K R RWT Q++ V+P +S G +
Sbjct: 553 IDKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQD 610
Query: 495 ----------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
LI+ E+L G + I S IV + E GPE + F + +Q ++
Sbjct: 611 NADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVT 670
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQI 595
L +G S+ + D K + +Q I Q +T NEL V
Sbjct: 671 YWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATF 730
Query: 596 ENHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK 647
EN + + + S+ + +S S + + Q +G Q+ + +
Sbjct: 731 ENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKR 790
Query: 648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + D P A+ G ++ + GL P E H+++ RE +
Sbjct: 791 IPFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGL 840
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 841 IDTAVKTAETGYIQRRLVKALEDLSERYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMAPEEIKNMSV--CHILYPETMDESRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 167/625 (26%), Positives = 275/625 (44%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E ES LQ V Y++ + G ++ +
Sbjct: 196 DLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESL-LQFHVATYMDNDIAGQPQALQK-- 252
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 253 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 307
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 308 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 367
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 368 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVVPYSTFRLNLSVTSPYNADFDGDEMNLHVP 427
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 428 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKDQVMNILLW 487
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIKKSE 501
+P+PA+ K R +WT Q++ V+P G + + D + E
Sbjct: 488 VPDWDGVIPQPAILKPR--PKWTGKQLISLVIPAGLNLIRTSEEGLSPANDDGLFVHGGE 545
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + ++ + I+ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 546 LMYGLLSKKSVGASAGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 605
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK------S 613
+ + I+ + Q R +T+NEL L N + V+K + K +
Sbjct: 606 DRHTIQQIEDAVNNQKADVAEITRSATENELEPLPGMNVRETFESKVSKALNKARDDAGT 665
Query: 614 STLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
T L D S S + + Q +G Q S GK HF +
Sbjct: 666 KTEESLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 724
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 725 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 779
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 780 EDVMAKYDGTVRNSLGD-IVQFIYG 803
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 300/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPP-----------GFDSC-----GDRYLIKKSEV 502
+P+PA+ K R RWT Q++ V+P G D+ LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGHDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 183/688 (26%), Positives = 301/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE +++ + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRQMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L +LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQS +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-----------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P +S G + LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 175/668 (26%), Positives = 294/668 (44%), Gaps = 52/668 (7%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E LQ V Y++ + G ++ +
Sbjct: 188 DLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIAGQPQALQK-- 244
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 245 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 299
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 300 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKV 359
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 360 ERHIVDGDYIIFNRHPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 419
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 420 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLW 479
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSE 501
+P+PA+ K A WT QIL ++P G + D LI E
Sbjct: 480 VPDWDGVIPQPAIVKP--LAMWTGKQILSLIIPTGMNILRVSEEGFSPLNDDGLLISGGE 537
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + + + ++ +F EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 538 LMYGLLHKKIVGASGGGVIHIVFNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIP 597
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYL 619
+ + I+ + Q L R +T+NEL L N + V+K + K+
Sbjct: 598 DRHTIQQIENAVNNQKAEVLEIPRSATENELESLPGMNVRETFESKVSKALNKARDDAGA 657
Query: 620 IDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLN 670
+ KS ++ Q A G G + +S + VE F R P +
Sbjct: 658 VTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 717
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 718 YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 777
Query: 731 YDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA-VLDSSPSSN 789
YDGTVRN + I+QF Y + + V +L +T ++ ++DS P ++
Sbjct: 778 YDGTVRNSLGD-IVQFVYGEDGLDGVHIEQQRVDV-ILCSTKQFERKFRVDLMDSQPETS 835
Query: 790 NSWELMKE 797
S E +++
Sbjct: 836 ISPEFLEQ 843
>gi|242807568|ref|XP_002484983.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715608|gb|EED15030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1441
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 177/678 (26%), Positives = 301/678 (44%), Gaps = 96/678 (14%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV- 201
++ +Y+P PPNC+ P +S ++ DL+ + V + + + R G P E
Sbjct: 266 FLWQYIPAPPNCIR-PSVSQDGASNEDDLTAKLGDIVQSNITLRNNLRKGAPVPTLMECW 324
Query: 202 ESNDLQLAV---GQYLEVRGTA-KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
+ LQ+A+ G ++G A K +R + +R Q + R K
Sbjct: 325 DYMTLQIAIYINGDVPGLKGEAGKPTRSLVSRLKGKQG----------RFRGNLSGKRVD 374
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LT 310
FS R+VI+ D R++E+ VP +A+ +T+ E V +N+ YL++LV N + +
Sbjct: 375 FSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPGAKKVI 434
Query: 311 YSDGSSSYSLREGSKGHTF----LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D + SL+ ++ L+ G +V R ++DGD NR P+ HK S+ + V V
Sbjct: 435 KKDSGLTISLKHSARSLDLIAAQLQIGDLVERHLVDGDIALYNRQPSLHKLSILSHFVKV 494
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N +C P +ADFDGD ++L PQ+ A++E +EL V+ L++ NG +
Sbjct: 495 RPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKNGEPIIG 554
Query: 427 LATDALLSLKVMF--KKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQI 479
D +S M K F D+ Q+ ++ L P LP PA+ K + WT Q+
Sbjct: 555 AIQD-FISAAYMLSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAILKPQML--WTGKQV 611
Query: 480 LQSVLPPGFD---------SC----------------GDRYL-IKKSEVLKGDFDRDTIP 513
++ P D +C D +L I+ SE++ G D+ TI
Sbjct: 612 FNILMRPNKDDPVKVNIDAACREFKAPKDGQPKDLDPNDGWLVIRNSEIMCGVMDKSTIG 671
Query: 514 SVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKE 572
S + V I GP E + L L GFS+ + D S+ + +
Sbjct: 672 SGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGITDVYPSEKLVQTKNEL 731
Query: 573 IQALYSLL-----------YHRMSTQNEL--VDLQIENHIRHVKMLVAKFIL----KSST 615
++ Y+ +++ +EL ++ Q+ + V+ + + K +
Sbjct: 732 VERAYAACDEVIAKYKAGKLEKLAGCDELQTMESQVSGILSKVRQQAGEECIAQLSKYNA 791
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGLQL--SDRGK--FYSKTLVEDIASHFERIYPMDLNY 671
+ S S + V Q +G Q+ S+R + F +TL HF P + +
Sbjct: 792 PLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTL-----PHF----PKNARH 842
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ FF L P E H++S RE ++ ++ +E G + + LM L D+ Y
Sbjct: 843 PPSK-GFVRNSFFSSLSPTEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKY 901
Query: 732 DGTVRNVCSNSIIQFDYA 749
DGT+R S SI+QF Y
Sbjct: 902 DGTIR-TSSASIVQFSYG 918
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 193/754 (25%), Positives = 320/754 (42%), Gaps = 85/754 (11%)
Query: 58 ESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDG-------VAQRL 110
E T EP K G G + I + ++E K + KND V ++
Sbjct: 127 EQQDTDEPVKKRGGCGAQQPNITVDGMKMVAEFKAP------KKKNDDQEQLPEPVERKQ 180
Query: 111 LSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSS 169
+ S V +LKRI +E L F + D IL+ LP+PP + + D S
Sbjct: 181 ILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 240
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R R+G P E + LQ + Y + R T +S
Sbjct: 241 DLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNELPGQPRATQRSG 299
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S KA ++R + K FS+R+VIT D ++E+GVP+ IA
Sbjct: 300 RPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIAL 352
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPG 333
+T+ E V +NI L+ELV+ + Y +RE + L G
Sbjct: 353 NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELG 412
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 413 YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 472
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
PQS +AEVLEL V K ++S + + + D LL + + K+ ++K +
Sbjct: 473 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNI 532
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGD 493
M+ +P PA+ K R WT Q+ ++P GF + GD
Sbjct: 533 LMWWEDFDGKVPAPAILKPR--PIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGD 590
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L +GF
Sbjct: 591 TMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 650
Query: 553 SVSLEDFSLSKAALWNIQKEIQA----LYSLLYHRMSTQNE-----LVDLQIENHIRHV- 602
S+ + D A + I + I + L+ Q E + EN + V
Sbjct: 651 SIGIGDTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFENRVNQVL 710
Query: 603 -------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
K + +S+ L ++ + S + + Q +G Q + GK ++
Sbjct: 711 NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFID 769
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G
Sbjct: 770 RTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 824
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 825 IQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 857
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 172/645 (26%), Positives = 279/645 (43%), Gaps = 78/645 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 433
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 434 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 493
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFL 444
FDGD ++L PQ+ +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 494 FDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFV 553
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDSCGDR 494
DK + ++ + +P+PA+ K R RWT Q++ V+P P D
Sbjct: 554 DKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGAQDN 611
Query: 495 ---------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + I S IV + E GPE + F + +Q ++
Sbjct: 612 ADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIE 596
L +G S+ + D K + +Q I Q +T NEL V E
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFE 731
Query: 597 NHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
N + + + S+ + +S S + + Q +G Q+ + +
Sbjct: 732 NKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRI 791
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++
Sbjct: 792 PFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLI 841
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 842 DTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 167/624 (26%), Positives = 286/624 (45%), Gaps = 70/624 (11%)
Query: 176 LKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGV 232
L +LK + + R +G+P QE ES LQ V Y++ + G ++ +
Sbjct: 79 LGDILKANINVQRLEINGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK------- 130
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+ +T+
Sbjct: 131 SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYP 190
Query: 289 ERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIM 341
E V +NI+ L +LV N D LR + G L+ G V R I+
Sbjct: 191 EVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHII 250
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L PQS
Sbjct: 251 DNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 310
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP- 459
+AE+ +L +V +Q++S + + + D L ++ M + F++ Q L M P
Sbjct: 311 RAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--LDQVLNMLYWIPD 368
Query: 460 ----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY--------LIKKSEV 502
+P+P + K + W+ Q+L +P G FD G Y LI ++
Sbjct: 369 WDGVIPKPTILKPK--PLWSGKQLLSMAIPNGIHLQRFDE-GTTYLSPKDNGMLIIDGQI 425
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED---- 558
+ G D+ T+ S ++ + EKGP+ + F ++Q ++ L +GFS+ + D
Sbjct: 426 IFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIGDTIAD 485
Query: 559 ----------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLV 606
+L+K + + KE QA H M+ + D ++ N R
Sbjct: 486 EKTMREITEAIALAKKRVQEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRS 545
Query: 607 AKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
A+ L+ + + ++ + S + + Q + +G Q S GK + + HF +
Sbjct: 546 AELNLRDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHFSKD- 603
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ L
Sbjct: 604 ----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 659
Query: 726 DVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGT RN N IIQF Y
Sbjct: 660 DIMVHYDGTTRNSLGN-IIQFVYG 682
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 162/634 (25%), Positives = 274/634 (43%), Gaps = 71/634 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R R+G P E + LQ V Y + R T +S
Sbjct: 319 DLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHVATYFDNELPGQPRATQRSG 377
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S KA ++R + K FS+R+VIT D ++E+GVP+ IA
Sbjct: 378 RPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL 430
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPG 333
+T+ E V +NI L+ELV+ + Y +RE + L G
Sbjct: 431 NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELG 490
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 491 YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 550
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
PQS +AEVLEL V K ++S + + + D LL + + K+ F++K +
Sbjct: 551 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 610
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGD 493
M+ +P PA+ K R WT Q+ ++P GF + GD
Sbjct: 611 LMWWEDFDGKIPAPAILKPR--PLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGD 668
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L +GF
Sbjct: 669 TQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 728
Query: 553 SVSLEDFSLSKAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV- 602
S+ + D A + I + E++ L R + + EN + V
Sbjct: 729 SIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVL 788
Query: 603 -------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
K + +S+ L ++ + S + + Q +G Q + GK ++
Sbjct: 789 NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFID 847
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G
Sbjct: 848 RTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 902
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 903 IQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 935
Score = 43.9 bits (102), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ--------LANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S+ S ++ L++P LG KCE+C T+ +C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTIDRKMKCETC-TANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P++H
Sbjct: 77 PGHFGHLELAKPMFH 91
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 152/537 (28%), Positives = 245/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 179 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 238
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR HK S
Sbjct: 239 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVXRHIVDGDYIIFNRQLXXHKES 298
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 299 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 358
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 359 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKP--LAMW 416
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G ++ T+ + ++ +
Sbjct: 417 TGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTVGASPGGVIHIV 476
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLY 581
F EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ + Q L
Sbjct: 477 FNEKGPEAAMDFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEI 536
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 537 TRSATENELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKG 596
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 597 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 656
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 657 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 712
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 186/696 (26%), Positives = 309/696 (44%), Gaps = 69/696 (9%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISD 162
+D QR+LS+ E+ + K I E +L F + +++ + P P IS
Sbjct: 7 SDEPEQRVLSTE-EILNIFKHISPEDSYRLGFNEEFARPEWMILTVLPVPPPPVRPSISF 65
Query: 163 GVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGT 219
S D L +LK + + +G P+ +E ES LQ V Y++ + G
Sbjct: 66 NESQRGEDDLTFKLADILKANISLETLEHNGAPHHAVEEAESL-LQFHVATYMDNDIAGQ 124
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VI+GD ++++
Sbjct: 125 PQALQK-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQV 177
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 178 GVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDV 237
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDG
Sbjct: 238 QLQYGWKVERHIMDEDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDG 297
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS +AE+ +L +V Q++S + + + D L + K+ + FL+
Sbjct: 298 DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLE-- 355
Query: 448 FTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC------ 491
F + L M P +P PA+ K + WT QIL +P G FD
Sbjct: 356 FDEVLNMLYWVPDWDGVIPIPAVLKPK--PLWTGKQILSVAIPNGIHLQRFDEGTTLLSP 413
Query: 492 -GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
+ LI E++ G D+ T+ S ++ + EKGP F ++Q ++ L +
Sbjct: 414 KDNGMLIIDGEIIFGTVDKKTVGSSSGGLIHVVTREKGPTVCARLFGNIQKVVNFWLLHN 473
Query: 551 GFSVSLED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQ 594
GFS + D + +K + + KE QA H M+ + D ++
Sbjct: 474 GFSTGIGDTVADGQTMREISETIADAKKKVEAVTKEAQANLLTAKHGMTLRESFEDNVVR 533
Query: 595 IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
N R +A+ LK + + ++ + S + + Q + +G Q S GK
Sbjct: 534 YLNEARDKAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGFGF 592
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
V+ HF + +Y G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 593 VDRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAET 647
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN N +IQF Y
Sbjct: 648 GYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYG 682
>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 996
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 243/543 (44%), Gaps = 48/543 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 264 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 323
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R ++DGD + NR P HK S
Sbjct: 324 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNRQPXXHKES 383
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 384 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 443
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 444 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKKQVMNILLWVPDWDGVIPQPAIVKP--LAMW 501
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G ++ ++ + ++ I
Sbjct: 502 TGKQILSLVIPTGLNLLRGSEEGLSPVNDDGLLISGGELMYGLLNKKSVGASGGGVIHII 561
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLY 581
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + Q L
Sbjct: 562 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNEQKAEVLEI 621
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKS---------------STLGYLIDSKSDS 626
R +T+N+L L N + V+K + K+ + + S S
Sbjct: 622 TRSATENQLDSLPGMNVRETFESKVSKALNKARDDAGTVTENSLKDFNNATQMARSGSKG 681
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q S GK HF + +Y G ++ + G
Sbjct: 682 STINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRG 735
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 736 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQF 794
Query: 747 DYA 749
Y
Sbjct: 795 VYG 797
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 169/636 (26%), Positives = 279/636 (43%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 278 DLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 336
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 337 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 389
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ+LV N D LR + G L G V
Sbjct: 390 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKV 449
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 450 ERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRMNLSVTTPYNADFDGDEMNLHVP 509
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + ++
Sbjct: 510 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTKEQVMNIMLW 569
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY-------- 495
+P PA+ K R RWT Q++ LP G + S +++
Sbjct: 570 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGV 627
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G + T+ + ++ +IF E GPE + FF+ Q ++ L +GFS+
Sbjct: 628 LIHGGQLMYGMLSKKTVGASGGGVIHTIFNEYGPETAVAFFNGAQTIVNYWLLHNGFSIG 687
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + I+ +E++A+ + +T+N L L N + V++
Sbjct: 688 IGDTIPDAVTIQRIENCVRERKQEVEAITA-----SATENTLEPLPGMNVRETFESKVSR 742
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 743 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 801
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 802 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 856
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 857 GYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYG 891
Score = 40.4 bits (93), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVK 102
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 169/636 (26%), Positives = 279/636 (43%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 276 DLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 335 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ+LV N D LR + G L G V
Sbjct: 388 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + ++
Sbjct: 508 QSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNIMLW 567
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY-------- 495
+P PA+ K R RWT Q++ LP G + S +++
Sbjct: 568 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGL 625
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 626 LIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIG 685
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + I+ KE++A+ + +T+N L L N + V++
Sbjct: 686 IGDTIPDAITIQRIENCVRERKKEVEAITA-----SATENTLEPLPGMNVRETFESKVSR 740
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 741 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 799
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 800 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 854
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 855 GYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYG 889
Score = 40.4 bits (93), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVK 102
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 185/725 (25%), Positives = 314/725 (43%), Gaps = 79/725 (10%)
Query: 87 ISELKLTMYAFQLQIKNDG-------VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
+ +K+ Q + KND V ++ + S V +LKRI +E L F
Sbjct: 181 VDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 240
Query: 140 Q-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
+ D IL+ LP+PP + + D S DL+ + + + R R+G P
Sbjct: 241 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300
Query: 199 QEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
E + LQ + Y + R T +S R + + S KA ++R +
Sbjct: 301 TEF-AQLLQFHIATYFDNDLPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLM 352
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI L+ELV+
Sbjct: 353 GKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 412
Query: 313 DGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ Y +RE + L G V R + DGD V NR P+ HK S+
Sbjct: 413 KTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 472
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
+ + T ++N + P +ADFDGD +++ PQS +AEVLEL V K ++S
Sbjct: 473 RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANR 532
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D LL + + K+ ++K + M+ +P PA+ K R WT Q
Sbjct: 533 PVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPR--PIWTGKQ 590
Query: 479 ILQSVLP----------------PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVT 521
+ ++P GF + GD + I+K E+L G + T+ + ++
Sbjct: 591 VFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIH 650
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY 581
I+ E GP+ +F Q L+ L +GFS+ + D + + I + I S +
Sbjct: 651 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSEVT 710
Query: 582 HRM-STQNELVDLQ--------IENHIRHV--------KMLVAKFILKSSTLGYLIDSKS 624
+ Q++L++ + EN + V K + +S+ L ++ + S
Sbjct: 711 ELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 770
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ + Q +G Q + GK V+ HF + +Y G ++ +
Sbjct: 771 KGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKN-----DYGPESRGFVENSYL 824
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +I
Sbjct: 825 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VI 883
Query: 745 QFDYA 749
QF Y
Sbjct: 884 QFLYG 888
>gi|147779115|emb|CAN69100.1| hypothetical protein VITISV_018848 [Vitis vinifera]
Length = 438
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/125 (73%), Positives = 103/125 (82%), Gaps = 5/125 (4%)
Query: 674 AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 733
AK ++ F+ PYEEM HSISTRE+IVRSSRGLSEP TL KNLMA+LRDVVICYDG
Sbjct: 298 AKEAIMPMYFY----PYEEMVHSISTREIIVRSSRGLSEPRTLSKNLMAILRDVVICYDG 353
Query: 734 TVRNVCSNSIIQFDYAVNAR-KSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSW 792
TVRNVCSNSIIQF+Y V R FPAGE VGVLAATAMSNPAYKAVLDSSPS+N+SW
Sbjct: 354 TVRNVCSNSIIQFEYGVKTRINPQRFFPAGELVGVLAATAMSNPAYKAVLDSSPSNNSSW 413
Query: 793 ELMKE 797
EL+++
Sbjct: 414 ELIRK 418
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 173/638 (27%), Positives = 279/638 (43%), Gaps = 82/638 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 277 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 336 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 388
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ+LV N D LR + G L G V
Sbjct: 389 TLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 448
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 449 ERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 508
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K Q + M
Sbjct: 509 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTK--DQVMNMM 566
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY------ 495
P +P PA+ K R RWT Q++ LP G + + +++
Sbjct: 567 MWVPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVDKDNSALSEKFSPLNDG 624
Query: 496 --LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
LI +++ G F + T+ + ++ +IF E GP + FF+ Q ++ L +GFS
Sbjct: 625 GLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPGTAVAFFNGAQSIVNYWLLHNGFS 684
Query: 554 VSLEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLV 606
+ + D + I+ KE++A+ + +T+N L L N + V
Sbjct: 685 IGIGDTIPDALTIQRIENCVRVRKKEVEAITA-----SATENTLEPLPGMNVRETFESKV 739
Query: 607 AKFI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
++ + S T L D S S + + Q +G Q S GK
Sbjct: 740 SRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPF 798
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF + +Y G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 799 GFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 853
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 854 ETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFVYG 890
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIK 102
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 179/698 (25%), Positives = 306/698 (43%), Gaps = 79/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------VLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 298 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 357
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 358 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 417
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 418 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 477
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 478 FMNILMWWEDFDGKIPAPAVLKPR--PLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFI 535
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 536 TPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 595
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ--------IENHI 599
+GFS+ + D A + I + I + + + + Q++ ++ + EN +
Sbjct: 596 QNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEPGRTMMESFENRV 655
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 656 NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPY 714
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
++ HF + +Y G ++ + GL P E H++ RE ++ ++ S
Sbjct: 715 GFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|355570729|ref|ZP_09041999.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
gi|354826011|gb|EHF10227.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
Length = 879
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 187/719 (26%), Positives = 310/719 (43%), Gaps = 91/719 (12%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSD 170
+++ L++IP+E + L G P + +L LPVPP + I + D
Sbjct: 174 ADIRARLEKIPDEDLRHL---GINPDVARPEWTVLTVLPVPPVTMRPSIILENGQRSEDD 230
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L+ ++ + + +G P +++ LQ V YL EV G +
Sbjct: 231 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR--- 286
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P T L+ + R K FS+R+VI+ D V E+G+P +A
Sbjct: 287 ----SGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSVMEVGIPLAVANE 342
Query: 285 ITFEERVNVHNINYLQELVDN---KLCLTYSDGSSSYSLREGSKGHTF-----------L 330
+T V +NI L+++V N + L+ G++ Y +R + L
Sbjct: 343 MTLPVTVTPYNIEELRQMVRNGPVRRSLSQPCGAN-YVIRPDKRRMRLAEGNLETVAEML 401
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
PG VV R+I DGD V NR P+ H+ S+ A V V D T ++NP +C P +ADFDGD
Sbjct: 402 EPGWVVERQIRDGDIVLFNRQPSLHRMSIMAHRVKVMDGRTFRLNPAVCPPYNADFDGDE 461
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQ 450
++L PQ+ A+AE L +VE+ +LS G + D + + ++ + K T+
Sbjct: 462 MNLHIPQTEEARAEAAILVAVEENILSPRFGGPIIGGIHDHVSGIFMLTNQL---KWHTK 518
Query: 451 QLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD------SCGDRYLIKK 499
Q A++ L LP P + K W+ QI VLP + SC + K+
Sbjct: 519 QEALYLLKNIEIEHLPPPGMVKDGVPY-WSNKQIFSIVLPKELNMVFRASSCQNCETCKR 577
Query: 500 SEVLK-------------GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
E + G D+ I + +IV I + G + +F D + L +
Sbjct: 578 QECDRDAYVRIIDGNLESGTIDKKAIGAFDGQIVNRIIRQYGMKRAADFIDDITHLAIRA 637
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-------------STQNELVDL 593
+ +GFS ++D LSK I++ ++ + + R+ T E +++
Sbjct: 638 IMMNGFSFGIDDEDLSKTEYGQIEEVLRNAITDVQRRIRIYEDGQLEAMPGRTPEETLEM 697
Query: 594 QIENHIRHVKMLVAKFILKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
QI + + + + LG + S + ++ + Q AG +G Q S RG+
Sbjct: 698 QIMQVLGKARDRTGEIAGRHLGLGNSAVVMAVSGARGSMLNLTQMAGCVG-QQSVRGERI 756
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ + HF + + A +G I + GL+P E H+I RE +V ++
Sbjct: 757 MRGYDDRTLPHFRK-----GDRGAAAHGFISHSYKSGLNPTEFFFHAIGGREGLVDTAVR 811
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-HSLFPAGEPVGV 767
S+ G L + ++ L+D+ + YDGTVR IIQF Y + S F G+PV V
Sbjct: 812 TSQSGYLQRRMINALQDLKVAYDGTVRTT-GGRIIQFCYGEDGTDPMKSSF--GDPVDV 867
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 185/698 (26%), Positives = 313/698 (44%), Gaps = 71/698 (10%)
Query: 103 NDG--VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI 160
NDG QR+LS+ E+ + K I E +L F + ++L + P P I
Sbjct: 5 NDGDEPEQRVLSTE-EILNIFKHISSEDYIRLGFNEEFARPEWMLLTVLPVPPPPVRPSI 63
Query: 161 SDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
S S D L +LK + + +G P+ +E ES LQ V Y++ +
Sbjct: 64 SFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIA 122
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VI+GD ++
Sbjct: 123 GQPQALQK-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD 175
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
++GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 176 QVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAG 235
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R IMD D V NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 236 DIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADF 295
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L +V Q++S + + + D L + K+ + F++
Sbjct: 296 DGDEMNLHVPQSEETRAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIE 355
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC---- 491
F Q L M P +P+PA+ K + WT QIL +P G FD
Sbjct: 356 --FDQVLNMLYWVPDWDGVIPQPAILKPK--PLWTGKQILSIAIPKGIHLQRFDEGTTML 411
Query: 492 ---GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ L+ +++ G D+ T+ S ++ + EKGP+ + F ++Q ++ L
Sbjct: 412 SPKDNGMLVIDGQIVFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKMFGNIQKVVNFWLL 471
Query: 549 ADGFSVSLED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD-- 592
+GFS + D + +K + + KE QA H M+ + D
Sbjct: 472 HNGFSTGIGDTIADGETMKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNV 531
Query: 593 LQIENHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
++ N R +A+ L ++ + ++ + S + + Q + +G Q S GK +
Sbjct: 532 VRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAF 590
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
V+ HF + +Y G ++ + GL P E H++ RE ++ ++ +
Sbjct: 591 GFVDRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 645
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L D+++ YD T RN N +IQF Y
Sbjct: 646 ETGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYG 682
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 184/675 (27%), Positives = 293/675 (43%), Gaps = 99/675 (14%)
Query: 147 YLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESND 205
Y+P PP C+ P ++ +T DL++ + +++ +IR++ S GTP E +
Sbjct: 250 YVPAPPVCIR-PSVAQEGATTEDDLTVK-ITEIIWTSSLIRAALSKGTPISNLME-QWEF 306
Query: 206 LQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSV 263
+QL++ Y+ E+ G S G Q K + R K FS R+V
Sbjct: 307 MQLSIAMYINSEMPGLRPSDMPSKPIRGFCQ----RLKGKQGRFRGNLSGKRVDFSGRTV 362
Query: 264 ITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGS 315
I+ D R++++ VP+ IA+ +TF ERV N +LQ+ + N + G
Sbjct: 363 ISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF 422
Query: 316 SSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
+ LR G++ L+ G +V R + D D V NR P+ HK S+ A V V T++
Sbjct: 423 KRF-LRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLR 481
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
N +CGP +ADFDGD ++L PQ+ AK E LEL ++ L+S NG + D +
Sbjct: 482 FNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFIT 541
Query: 434 SLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG 487
+ ++ K FLD+ + + + LP PA+ K RC WT Q+ ++ P
Sbjct: 542 AAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRC--LWTGKQVFTVLMKPN 599
Query: 488 FDS-----------------------C-GDRYL-IKKSEVLKGDFDRDTI-PSVINEIVT 521
S C D YL I+ SE++ G D+ + + +
Sbjct: 600 RFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFY 659
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY 581
I + G E E L + L GFS+ +ED K+ + QKEI L+
Sbjct: 660 VILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKS--LSSQKEI-----LVN 712
Query: 582 HRMSTQNELV------DLQIENHIRHVKMLVAKFILKSSTLGYLIDS------------- 622
+T ++ + L+ + + L AK SSTL + D
Sbjct: 713 KAYATSDDFIMQYAKGILECQPGMDQEATLEAKI---SSTLSKVRDDVGEICMDELGPAN 769
Query: 623 --------KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
S + V Q +G Q+ GK + HF + + +P A
Sbjct: 770 SPLIMATCGSKGSKINVSQMVACVGQQIIS-GKRVPDGFQDRSLPHFHK----NSKHPLA 824
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
K G + F+ GL P E + H+IS RE +V ++ +E G + + LM L D+ YDGT
Sbjct: 825 K-GFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGT 883
Query: 735 VRNVCSNSIIQFDYA 749
VR+ S+ ++QF Y
Sbjct: 884 VRSSNSD-VVQFVYG 897
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 163/640 (25%), Positives = 275/640 (42%), Gaps = 67/640 (10%)
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+ DG S DL+ + V + ++ G +E E + LQ +++
Sbjct: 187 LMDGTSRGEDDLTYKLCDIVKANAHLKKAQEQGATGHMMREHE-DLLQFHCATFVDNEIS 245
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
R +S R + A S K ++R + K FS+R+VITGD ++
Sbjct: 246 GMPRANQRSGRPIKA-------IRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSID 298
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVD-------NKLCLTYSDGSSSYSLREGSKG 326
++GVP IA +T+ E V HN+N LQE V+ + DG+ G G
Sbjct: 299 QVGVPRSIASNLTYPEMVTRHNVNRLQEAVERGPEEHPGAKYVIRPDGTRVDLRVTGVTG 358
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+PG +V R +MD D + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 359 APSLQPGWIVERHLMDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADF 418
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS+ A+AE+ +L V Q++S + + + D L + K + F+D
Sbjct: 419 DGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMD 478
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP-----------PGFD-- 489
+A L M+ +P PA+ K + WT QI+ ++P P +
Sbjct: 479 RAMVMNLLMWVPGWDGNMPPPAIVKPK--PMWTGKQIMSLIIPKVNAVTFHSTHPDGETD 536
Query: 490 --SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
S GD R +++ E++ G + T+ + +V + E GPE + Q ++
Sbjct: 537 LLSPGDTRVIVEDGELVAGIVCKKTVGTAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYW 596
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNEL------------ 590
L GFSV + D I K I Q + ++ S + E
Sbjct: 597 LLHTGFSVGIGDTVADDETTDLINKMIFDARQRVNEIIGEAQSDKLERQTGMTLRETFEA 656
Query: 591 -VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
V+ + + AK + + +++ + S + + Q + +G Q + GK
Sbjct: 657 NVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVG-QQNVEGKRI 715
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
HF + +Y G ++ + GL+P E H++ RE ++ ++
Sbjct: 716 PFGFQYRSLPHF-----VKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVK 770
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+++ YDGTVRN N IIQF Y
Sbjct: 771 TAETGYIQRRLVKALEDIMVKYDGTVRNAQGN-IIQFLYG 809
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 182/688 (26%), Positives = 297/688 (43%), Gaps = 79/688 (11%)
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVST---MSSDLSIAM 175
+LKRI EE + + + + +++ + P P IS DG ST DL+ +
Sbjct: 219 ILKRISEEDLRNMGLNSDYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKL 278
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + ++ R G+P +++ E LQ V Y+ + R KS R V A
Sbjct: 279 GDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSGRPVKAI 337
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ K ++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E
Sbjct: 338 -------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPE 390
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V +NI L LV+N + +DG+ L G V R +MD
Sbjct: 391 TVTPYNIGRLHHLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMD 450
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQ+ +
Sbjct: 451 GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETR 510
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS--- 458
AEV EL V ++S + + D+L + K+ + F+DK + ++ +
Sbjct: 511 AEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDG 570
Query: 459 PLPRPALSKARCSARWTALQILQSVLP-------PGFDSCGDR---------YLIKKSEV 502
+P+PA+ K R RWT Q++ V+P P D LI+ E+
Sbjct: 571 VIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGAQDNADIPLKDTGLLIQSGEL 628
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + I S IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 629 LYGLLRKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPD 688
Query: 563 KAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKML 605
K + +Q I Q +T NEL V EN +
Sbjct: 689 KQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTT 748
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + S+ + +S S + + Q +G Q+ + + F +TL HF
Sbjct: 749 TQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHF 803
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 TK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 858
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVRN + IIQF Y
Sbjct: 859 KALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 152/542 (28%), Positives = 250/542 (46%), Gaps = 46/542 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ Y +RE + G L+ G V R I+DGD + NR P+ H
Sbjct: 330 G---PNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLH 386
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V +
Sbjct: 387 KESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNI 446
Query: 416 LSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+S + + D L + K+ + FL K Q + + P LP+PA+ K R
Sbjct: 447 VSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSKE--QVMNILLWIPDWDGILPQPAILKPR 504
Query: 470 CSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINE 518
+WT QI+ V+P G + D L+ +++ G + ++ + +
Sbjct: 505 --PKWTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSG 562
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QAL 576
I+ IF EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ + Q
Sbjct: 563 IIHIIFNEKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIKDAVNKQKE 622
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA- 635
+ + +T NEL L N + V+K + K+ + KS ++ Q A
Sbjct: 623 DVAVITQSATANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMAL 682
Query: 636 -GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGL 687
G G + +S + VE F R P +Y G ++ + GL
Sbjct: 683 SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 742
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 743 TPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFV 801
Query: 748 YA 749
Y
Sbjct: 802 YG 803
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 189/740 (25%), Positives = 318/740 (42%), Gaps = 74/740 (10%)
Query: 67 KCEGHFGYIELPIPIYHPSHISELKLTMYAF--QLQIKNDGVAQRLLSSCCEVKEMLKRI 124
K G G ++ I I I+E K+ Q Q+ + V ++ S V +LKRI
Sbjct: 87 KKRGGCGAMQPKITIEGMKIIAEYKVPRKKSDEQEQMLPEPVERKQQLSAERVLNVLKRI 146
Query: 125 PEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQV 183
+E L Y D IL+ LP+PP + + D S DL+ + +
Sbjct: 147 SDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNE 206
Query: 184 EIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPN 237
+ R R+G P E + LQ + Y + R T +S R + +
Sbjct: 207 NLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC------- 258
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI
Sbjct: 259 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNMTYPETVTPYNIE 318
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVF 347
L+ELV+N + Y +RE + L G V R ++DGD V
Sbjct: 319 RLKELVENGPHPPPGKTGAKYIIREDGQRVDLRYLRKSSDHHLELGYKVERHLIDGDFVL 378
Query: 348 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQ +AEVLE
Sbjct: 379 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQCFETRAEVLE 438
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRP 463
L V K ++S + + + D LL + + K+ F++K + M+ +P P
Sbjct: 439 LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAP 498
Query: 464 ALSKARCSARWTALQILQSVLPP----------------GFDSCGDRYL-IKKSEVLKGD 506
A+ K R WT Q+ ++P GF + GD + I++ E+L G
Sbjct: 499 AIMKPR--PLWTGKQVFNLIIPKQINLIRYSAWHSESETGFITPGDTCVRIERGELLSGT 556
Query: 507 FDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPL----LMENLFADGFSVSLEDFSLS 562
+ T+ + ++ I+ E GP+ +F Q L L++N F+ G ++ D S
Sbjct: 557 LCKKTMGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTM 616
Query: 563 KAALWNIQKEIQALYSLLYHRMSTQNE-----LVDLQIENHIRHV--------KMLVAKF 609
+ I K + L+ Q E + EN + V +
Sbjct: 617 EKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQRS 676
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
+ +S+ L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 677 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD----- 730
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++
Sbjct: 731 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 790
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YDGTVRN + +IQF Y
Sbjct: 791 KYDGTVRNSLGD-VIQFLYG 809
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 168/625 (26%), Positives = 274/625 (43%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R + G+P + E E LQ V Y+ + + KS
Sbjct: 202 DLTYKLGDIIRANGNVRRCEQDGSPAHVATEFEQL-LQFHVATYMDNDIAGQPQALQKSG 260
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S K ++R + K FSSR+VITGD ++E+GVP IA+
Sbjct: 261 RPI-------KSIRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNLSLDEVGVPISIAK 313
Query: 284 RITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 314 ILTYPETVTPYNIHKLHQLVRNGPSGHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKV 373
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 374 ERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 433
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L+ + K+ + FL K + ++
Sbjct: 434 QSEETRAEISQLCMVPLNIVSPQRNGPLMGIVQDTLVGIYKICRRDVFLTKEQVMNILLW 493
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPP----------GFDSCGDR-YLIKKSE 501
+P+PA+ K S +WT Q++ +P GF GD + E
Sbjct: 494 VPEWGGVIPQPAIIKP--SPKWTGKQLISMAIPKDINFVRPGEEGFSPVGDDGVFVLGGE 551
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G F + ++ + N +V IF EKG E ++FF+ Q ++ L GFS+ + D
Sbjct: 552 LIFGQFSKKSVGATRNGLVHIIFNEKGWEIAMKFFNGAQTIVNYWLLHFGFSIGIGDTIP 611
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI------LKS 613
+ + I+ + + + R +T+NEL L N + V+K + S
Sbjct: 612 DRNTIQQIEDAVNKQKAEVAEITRSATENELEPLPGMNVRETFESKVSKALNAARDEAGS 671
Query: 614 STLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+T L D S S + + Q +G Q S GK HF +
Sbjct: 672 ATEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 730
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 731 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 785
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
D + YDGTVRN + IIQF Y
Sbjct: 786 EDAMAKYDGTVRNSLGD-IIQFVYG 809
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 170/653 (26%), Positives = 289/653 (44%), Gaps = 65/653 (9%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVE 202
+L LPVPP C+ P ++ S D L +LK + + + G P + E
Sbjct: 48 LLTVLPVPPPCVR-PSVAFNESQRGEDDLTYKLGDILKANINVQKLEIEGAPQHVIHDFE 106
Query: 203 SNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
LQ V Y++ + G ++ + S P + +A L+ ++R+ + K
Sbjct: 107 KL-LQYHVATYMDNDIAGQPQALQK-------SGRPVKSIRARLKGKEGRIRSNLMGKRV 158
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLT 310
FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 159 DFSARTVISGDPNLELDQVGVPLSIAKTLTYPEIVTPYNIDRLTQLVKNGPNQHPGAKYV 218
Query: 311 YSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
D + LR + G L+ G V R I+D D V NR P+ HK S+ A V V
Sbjct: 219 IRDNGTRIDLRYNKRAGDLQLQYGWKVERHIVDEDPVLFNRQPSLHKMSMMAHRVKVMPY 278
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N + P +ADFDGD ++L PQS KAE+ +L +V Q++S + + +
Sbjct: 279 STFRLNLSVTSPYNADFDGDEMNLHVPQSEETKAELSQLCAVPLQIVSPQSNKPCMGIVQ 338
Query: 430 DALLSLKVM-FKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR---WTALQILQSVLP 485
D L ++ M + F+D + Q L M P + WT Q+L + +P
Sbjct: 339 DTLCGVRKMTLRNNFID--YEQVLNMLYWIPDWDGNVPPPAIIKPKPLWTGKQLLSAAIP 396
Query: 486 PG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
G FD + L+ E++ G D+ T+ S ++ + EKGP
Sbjct: 397 KGIHLQRFDDGTTMLSPKDNGILVVDGEIIFGVVDKKTVGSSAGGLIHVVTKEKGPYVCA 456
Query: 534 EFFDSLQPLLMENLFADGFSVSLED--------------FSLSKAALWNIQKEIQALYSL 579
+ F ++Q ++ +GFS+ + D +++K + + KE Q
Sbjct: 457 KLFSNIQKVVNYWFLHNGFSIGIGDTIADEKTMLEITEAIAIAKVKVEEVTKEAQENLLS 516
Query: 580 LYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAG 636
H M+ + D ++ N R A+ LKS + + ++ S S + + Q +
Sbjct: 517 AKHGMTLRESFEDNVVRFLNEARDKAGRSAEVNLKSLNNVKQMVSSGSKGSFINIAQMSA 576
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
+G Q S GK + HF + +Y G ++ + GL P E H+
Sbjct: 577 CVG-QQSVEGKRIPFGFADRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHA 630
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ RE ++ ++ +E G + + L+ L D+++ YDGT RN N +IQF Y
Sbjct: 631 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYG 682
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 169/636 (26%), Positives = 279/636 (43%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 276 DLTYKLAEIIRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 335 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ+LV N D LR + G L G V
Sbjct: 388 TLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + ++
Sbjct: 508 QSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLW 567
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY-------- 495
+P PA+ K R RWT Q++ LP G + S +++
Sbjct: 568 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGL 625
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E GP+ + FF+ Q ++ L +GFS+
Sbjct: 626 LIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIG 685
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + I+ KE++A+ + +T+N L L N + V++
Sbjct: 686 IGDTIPDAITIQRIENCVRERKKEVEAITA-----SATENTLEPLPGMNVRETFESKVSR 740
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 741 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 799
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 800 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 854
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + +IQF Y
Sbjct: 855 GYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYG 889
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H ++++K
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVK 102
>gi|226294925|gb|EEH50345.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
brasiliensis Pb18]
Length = 1458
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 183/693 (26%), Positives = 294/693 (42%), Gaps = 90/693 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P E R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPAEARPEV----------FLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNMNLKNALNKGAPVQTIIECWDHMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FSSR+VI+ D R++E+ VP +A +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ V N T + ++Y L++ L+ G +V R I DGD
Sbjct: 417 KLRQCVRNG---TKTWPGANYVLKKSQNFKMNLKFGNPNLIANELEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP----- 459
+EL V+ L++ NG + D + + ++ K F D+ + ++ L P
Sbjct: 534 MELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNVFYDRKTFTHVCLYMLLPGTRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP P++ K + WT Q+ ++ P DS DR+
Sbjct: 594 LPPPSILKPQ--MLWTGKQVFNILMRPNKDSPVLVNLDAACREFKAPKGPPRDLDANDRW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SEV+ G D+ TI S + V + + GP E + L L + GFS
Sbjct: 652 LCIRNSEVMCGVMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFS 711
Query: 554 VSLEDF-----------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIR 600
+ + D L + A + IQ S + +E + ++ I +
Sbjct: 712 IGITDVYPGDRLLEEKKELVEHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILS 771
Query: 601 HVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
V+ + +T + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGDLCISELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIG-GQRVQDGFQDR 830
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF P P AK G ++ FF GL P E + H+IS RE +V ++ +E G +
Sbjct: 831 TLPHF----PKHARQPPAK-GFVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYM 885
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ LM L D+ YDGTVRN S+SI+QF Y
Sbjct: 886 SRRLMKSLEDLSTRYDGTVRN-SSSSIVQFQYG 917
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 154/635 (24%), Positives = 277/635 (43%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRG 218
DL+ + + + + + GTP F ND+ GQ ++
Sbjct: 438 DLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQFHCATFMDNDI---AGQPQAMQS 494
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
+ + + V AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 495 SGRPIKSVRARL----------KGKEGRLRGNLMGKRVNFSARTVITGDPLLELDEVGVP 544
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRP 332
IA+ +T+ ERV +N +L ELV N D L+ + L+P
Sbjct: 545 KSIARNLTYPERVTAYNRAWLSELVRNGPNDYPGAKYVIRDTGERIDLKYNRRSDMALQP 604
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G +V R + DGD + NR P+ HK S+ + + + D T ++N + P +ADFDGD ++
Sbjct: 605 GWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMN 664
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQ 451
L PQS +AE+ ++ V +Q++S + + D L + K + LD QQ
Sbjct: 665 LHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQ 724
Query: 452 LAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR-------------Y 495
+ ++ +P P + K + W+ QIL +P G + D+
Sbjct: 725 VLLWVADWDGVVPMPCILKPK--PYWSGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGV 782
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ E++ G ++ + + ++ IF EKGP FF +Q ++ L +GFS+
Sbjct: 783 CIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIG 842
Query: 556 LEDFSLSKAALWNIQK---------------------EIQALYSLLYHRMSTQNELVDLQ 594
+ D KA +I + +++A +L + N +++
Sbjct: 843 IGDTVADKATTDSINQTISDAKAAVMDYIEYARHDWLKVEAGMTLRESFEANVNRVLNQA 902
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
++ H + + F + + ++ + S + + Q + +G Q S GK
Sbjct: 903 RDDVGNHAESSLPDF----NNVKQMVVAGSKGSFINISQMSACVG-QQSVEGKRIPFGFR 957
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + D P ++ G ++ + GL E H+++ RE ++ ++ +E G
Sbjct: 958 HRSLPHFTK----DDFTPESR-GFVENSYLRGLTAQEFFFHAMAGREGLIDTAVKTAETG 1012
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++CYDGTVRN +N++IQF Y
Sbjct: 1013 YIQRRLVKALEDVMVCYDGTVRN-STNNVIQFAYG 1046
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L++P LG KC++CG +C GHFG+I+L P++H ++ ++K
Sbjct: 220 LSDPRLGTLDRNYKCQTCGEGH-QECPGHFGHIDLAKPVFHIGYLGKVK 267
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 173/646 (26%), Positives = 282/646 (43%), Gaps = 80/646 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGS 324
+E+GVP IA+ +T+ E V +NI L +LV+N K L +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEHPGAKYVLR-ADGTRIDLRHHRR 432
Query: 325 KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +A
Sbjct: 433 AAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNA 492
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYF 443
DFDGD ++L PQ+ +AEV EL V ++S + + D+L + K+ + F
Sbjct: 493 DFDGDEMNLHVPQTEETRAEVRELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTF 552
Query: 444 LDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR- 494
+DK + ++ + +P+PA+ K R RWT Q++ V+P +S G +
Sbjct: 553 IDKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQD 610
Query: 495 ----------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
LI+ E+L G + I S IV + E GP+ + F + +Q ++
Sbjct: 611 NADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVT 670
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQI 595
L +G S+ + D K + +Q I Q +T NEL V
Sbjct: 671 YWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANELEALPGMNVRATF 730
Query: 596 ENHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK 647
EN + + + S+ + +S S + + Q +G Q+ + +
Sbjct: 731 ENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKR 790
Query: 648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + D P A+ G ++ + GL P E H+++ RE +
Sbjct: 791 IPFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGL 840
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 841 IDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLLSPEEIKNMSV--CHILYPETMDESRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 168/642 (26%), Positives = 280/642 (43%), Gaps = 72/642 (11%)
Query: 163 GVSTMSSDLSIAMLKKVLKQVE-IIRSSRSGTPNFESQEVESNDLQLAVGQYL------E 215
G S+ S D L +++ E + R R+G P +E S LQ + Y +
Sbjct: 263 GTSSKSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIEEF-SQLLQFHIATYFDNELPGQ 321
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
R T +S R + + S KA ++R + K FS+R+VIT D ++E+
Sbjct: 322 PRATQRSGRPIKSIC-------SRLKAKEGRVRGNLMGKRVDFSARTVITPDPNINIDEV 374
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---------- 325
GVP+ IA +T+ E V +NI L+ELV N + Y +RE +
Sbjct: 375 GVPWSIALNLTYPETVTPYNIERLKELVLNGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 434
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + DGD V NR P+ HK S+ + + T ++N + P +AD
Sbjct: 435 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K+ +
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLI 554
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------- 485
+K + M+ +P PA+ K R WT Q+ ++P
Sbjct: 555 EKDVFMNILMWWEDFDGKIPAPAILKPR--PIWTGKQVFNLIIPRQINLIRFCSWHSDEE 612
Query: 486 PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
GF + D + I+K E+L G + T+ + ++ I+ E GP+ +F Q L+
Sbjct: 613 KGFVTPSDTVVRIEKGELLSGTLCKKTLGTGSGSLIHIIWEEVGPDAARKFLGYTQWLVN 672
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEI----------------QALYSLLYHRMSTQN 588
L +GFS+ + D A + +I K I + L + H M
Sbjct: 673 YWLLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQLKAEPGHTMMESF 732
Query: 589 ELVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK 647
E + N R +V V + +S+ L ++ + S + + Q A +G Q + GK
Sbjct: 733 ENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMAACVG-QQNIEGK 791
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
+ HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 792 RIPFGFSDRTLPHFTKD-----DYGPESRGFVENSYLQGLTPQEFFFHAMGGREGLIDTA 846
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ + D+++ YDGTVRN + ++QF Y
Sbjct: 847 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VVQFIYG 887
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 17 IRFGLATQKEICTASISDCSISH--------ASQLANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S++ + A L++P +G KC++C S +C
Sbjct: 18 VQFGILSPDEIRQMSVAQIEYAETMEKGKPKAGGLSDPRMGTVDRKIKCQTC-MSGMAEC 76
Query: 69 EGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHFG++EL P++H + + M ++ + D + K LKR
Sbjct: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDNTKFKQALKIRNPKNRLKR 136
Query: 124 IPEETR-KKLAGKG 136
I + + KK+ G+G
Sbjct: 137 IYDACKTKKVCGEG 150
>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
Length = 871
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 170/628 (27%), Positives = 281/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVQRCEQEGAPAHVINEFESL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI L E V N D LR + G L+ G V
Sbjct: 186 TLSYPEIVTPYNIQKLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L + K+ + FLD F Q + +
Sbjct: 306 QSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLD--FDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P PA+ K R WT Q++ +P G FD + L+
Sbjct: 364 FWVPNWDGVVPTPAVLKPR--PMWTGKQMVSLAIPSGIFMQRFDEGNPANSPKDNGMLVY 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
K E++ G D+ T+ + ++ +I EKGP FF ++Q ++ L GFSV + D
Sbjct: 422 KGEIMYGVVDKKTVGATAGGLIHTIMREKGPYVAAGFFGNIQKIVNFWLLHHGFSVGIGD 481
Query: 559 FSLSKAALWNIQKEI-QALYSLLYHRMSTQ-NELVD--------------LQIENHIRHV 602
A + I I +A + + M Q N+L ++ N R
Sbjct: 482 TIADSATMTGIAATISEAKQKVSEYIMEAQENKLAPEPGMTLRESFEHNVSRVLNQARDT 541
Query: 603 KMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK S+ + ++ S S + + Q + +G Q+ + GK + HF
Sbjct: 542 AGRSAETSLKDSNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 TKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGT RN N IIQF Y
Sbjct: 656 KALEDVMVQYDGTTRNSLGN-IIQFVYG 682
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 201/802 (25%), Positives = 331/802 (41%), Gaps = 107/802 (13%)
Query: 34 DCSISHASQLANPFLGLPLEFGKC---ESC-----------GTSEP-GKCEGHFGYIELP 78
D + ++ NP L F C + C G+ EP K G G +
Sbjct: 37 DLKFKQSQKIRNPKHRLKRVFDACKNKQKCEGGDEMDVQGQGSEEPVKKSRGGCGAQQPK 96
Query: 79 IPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGY 137
+ I I+E K + + + V ++ S V +LKRI +E L Y
Sbjct: 97 LTIEGMKMIAEYKGSRKKNDEEPLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKY 156
Query: 138 FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
D IL+ LP+PP + + D S DL+ + + + + R+G P
Sbjct: 157 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHI 216
Query: 198 SQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLF 251
E + LQ + Y + R T +S R + + S KA ++R
Sbjct: 217 ISEF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNL 268
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD------- 304
+ K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI L+ELV+
Sbjct: 269 MGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 328
Query: 305 -------------NKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRP 351
+L L YS SS + L G K V R + DGD V NR
Sbjct: 329 GKTGAKYIIREDGQRLDLRYSKKSSDHHLELGYK----------VERHLNDGDFVLFNRQ 378
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +AEVLEL V
Sbjct: 379 PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 438
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSK 467
K ++S + + + D LL + + K+ F++K + M+ +P PA+ K
Sbjct: 439 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 498
Query: 468 ARCSARWTALQILQSVLPP----------------GFDSCGDRYL-IKKSEVLKGDFDRD 510
R WT Q+ ++P GF + GD + I+K E+L G +
Sbjct: 499 PR--PLWTGKQVFNLIIPKQINLIXTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKK 556
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
T+ + ++ I+ E GP+ +F Q L+ L +GFS+ + D A + I
Sbjct: 557 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKIN 616
Query: 571 KEIQALYSLLYHRMSTQNE---------LVDLQIENHIRHV--------KMLVAKFILKS 613
+ I S + + E + EN + V K + +S
Sbjct: 617 ETILKAKSEVKDLIKAAQEKSLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSES 676
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPT 673
+ L ++ + S + + Q +G Q + GK HF + +Y
Sbjct: 677 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFNGRTLPHFTKD-----DYGP 730
Query: 674 AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 733
G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDG
Sbjct: 731 EXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 790
Query: 734 TVRNVCSNSIIQFDYAVNARKS 755
TVRN + +IQF Y + S
Sbjct: 791 TVRNSLGD-VIQFLYGEDGMDS 811
>gi|284162089|ref|YP_003400712.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
gi|284012086|gb|ADB58039.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
Length = 871
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 175/697 (25%), Positives = 311/697 (44%), Gaps = 89/697 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+E L++IP++ L G P+ + ++ LPVPP + I + DL
Sbjct: 174 DVREWLEKIPDDDLPVL---GIDPKACRPEWLVITVLPVPPVTVRPSIILETGQRSEDDL 230
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ ++ + + + +G P+ +++ LQ V Y+ EV G +
Sbjct: 231 THKLVDIIRINQRFLENKEAGAPHLILEDLWEL-LQYHVTTYINNEVSGIPPARHR---- 285
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FS+R+VI+ D +NE+GVP EIA+ +
Sbjct: 286 ---SGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPCISINEVGVPKEIAEEL 342
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSKGHTF----------LRPGQ 334
T V NI +E + L ++Y +R +G + L PG
Sbjct: 343 TVPIYVTERNIEEAREYI-----LRTEHPKANYVIRPDGRRIRVMDTNREELAEKLEPGW 397
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R++ DGD V NR P+ H+ S+ A V V T ++NP +C P +ADFDGD ++L
Sbjct: 398 IVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPGKTFRLNPAVCPPYNADFDGDEMNLH 457
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
PQS+ A+AE L +V++ +LS G + D + L ++ + +K F+++ M
Sbjct: 458 VPQSIEAQAEAKILMAVQQHILSPRFGGPIIGGIHDHISGLYLLTRG---EKLFSKEEVM 514
Query: 455 FALSP-----LPRPALSKARCSARWTALQILQSVLP-----------PGFDSCG------ 492
+ L P LP P + K WT QI ++LP G + C
Sbjct: 515 YLLGPFDLKELPEPKVVKD-GKPYWTGKQIFSAILPDVTLEFKAEICKGCNECKKESCEY 573
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D Y +IK E+++G D + + I+ I + G + +F D + L + + G
Sbjct: 574 DAYVIIKNGELIRGTIDEKAVGAFKGIIIDEIVRKYGNDVAKKFIDDMTHLAIRAIMLTG 633
Query: 552 FSVSLEDFSLSKAALWNIQK-----EIQALYSLLYHRMSTQNELVDLQIENHIRHVKM-- 604
F++ ++D L + A+ +++ E + + + +R + +E + + M
Sbjct: 634 FTIGIDDEDLPEEAIAQVKEIIAEAEKKVIDLIKAYREGNLEPMPGRSLEETLEMMIMRE 693
Query: 605 ----------LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK--T 652
+ KF+ ++ + S + ++ + Q + +G Q S RG+ ++ T
Sbjct: 694 LGRARDMAGRVAEKFLGYNNPAVIMAVSGARGSMLNLTQMSACIG-QQSVRGERINRGYT 752
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF+ P DL+ G ++ + GL+P E H++ RE +V ++ S
Sbjct: 753 YTNRTLPHFK---PGDLS--ARARGFVESSYKRGLNPIEFFFHAMGGREGLVDTACRTSI 807
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G L + ++ L+D+ + YDGTVR S +++QF Y
Sbjct: 808 SGYLQRRMINALQDIKVEYDGTVREQTSETVVQFRYG 844
Score = 45.1 bits (105), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 13 QIVGIRFGLATQKEICTASIS---------DCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I IRF + + +EI S++ D L +P LG+ +C +CG
Sbjct: 5 RISAIRFEVLSPQEIRRMSVAKIVSAETYDDDGFPIEGGLMDPRLGVIDPGLRCRTCG-G 63
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+ G+C GHFG+IEL P+ H+ KL +A+ L ++C E + R
Sbjct: 64 KAGECPGHFGHIELAAPVI---HVGYAKL-------------IAKLLNATCRECGRL--R 105
Query: 124 IPEETRKKL 132
+P++ R K
Sbjct: 106 LPDKVRDKF 114
>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
Length = 920
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 217/896 (24%), Positives = 374/896 (41%), Gaps = 160/896 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESC-GTSEP 65
++ G+ + EI S+++ I H L +P G+ + KC++C GT
Sbjct: 57 VQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRKAKCQTCDGTIN- 115
Query: 66 GKCEGHFGYIELPIPIYH-------------PSHISELKLTMYAFQL------------- 99
+C GHFG+I L P+YH S LK + + L
Sbjct: 116 -ECPGHFGHINLAKPVYHVNPNNPKFKEILVKSKDQPLKCMAHVYDLCKGINICEVGNGG 174
Query: 100 ---------------------QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGY 137
+ D ++++ + V E+ KRI +E L Y
Sbjct: 175 CGRYLPKIRRLKGFKINGEWKHVDEDSQEKKIVLTAERVWEIFKRISDEDCAILGMDPKY 234
Query: 138 FPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
D I+ LPVPP + I G+ + +DL+ +K +I+R++ +
Sbjct: 235 ARPDWMIVTCLPVPPPAVRPAQII-GMDQIENDLT-------MKLADIVRANNKLLGAVQ 286
Query: 198 SQEVESND---LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTL 250
S E+ S LQL + ++ + T + A + S P + K LE ++R
Sbjct: 287 SGEILSGKTKMLQLHIASMMDSKSTL-----LPAYYHESTLPTQSIKDRLEGRDGRIRGN 341
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN----- 305
+ K F++R+VIT D R++++G+P IAQ +TF ERV NI +QELV
Sbjct: 342 LMGKRVDFAARTVITPDPNLRIDQVGIPRSIAQNMTFPERVAPFNIEKMQELVQRGNSQY 401
Query: 306 ---KLCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 361
K C+ +G LR SK L G +V R I DGD V +NR P+ K +
Sbjct: 402 PGAKFCIIKKNGDR-IDLRFPSKSPDLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMG 460
Query: 362 LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 421
V V T +NP + +A+FDGD ++L PQS+ ++EV L + +++
Sbjct: 461 HRVKVLPCSTFCLNPSVATAYNANFDGDEMNLHVPQSMETRSEVESLLVSSRLIITPQAS 520
Query: 422 NLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTAL 477
+ + D L+ + K+ + FL+K L MF + +P+PA+ K R WTA
Sbjct: 521 KPVMGIVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPKPAILKPR--PLWTA- 577
Query: 478 QILQSVLPPG---------------------FDSCGD-RYLIKKSEVLKGDFDRDTIPSV 515
+ S++ PG + S GD + +I+ E++ G + T+ +
Sbjct: 578 --VHSIIIPGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGAS 635
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
++ IF E G E F+ ++Q ++ L +G S+ +ED + IQ IQ
Sbjct: 636 AASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIEDTLANCQTYMGIQDTIQN 695
Query: 576 LYSLLYHRMS---------TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGY 618
+ + T + EN + + L + + + L
Sbjct: 696 AKEDVIEVIERSHNDELEPTPGNTLRQTFENQVNRIIYDAQQQASALAKNSLTEYNNLKA 755
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTA 674
+ + S + Q +G Q + + F +TL HF + D N P +
Sbjct: 756 MAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTL-----PHFIK----DDNGPES 806
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
+ G ++ + GL P E H+++ RE+++ +R SE G + + L+ + V++ YDGT
Sbjct: 807 R-GFVENSYLTGLTPCEFYFHAMAGRELLIYETRIKSETG-IIRQLVKGMESVMVHYDGT 864
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNN 790
VRN + ++QF Y + + S+ + + +SN A++ PS+ N
Sbjct: 865 VRN-SAGRLLQFSYGEDGLAAESV-----ELQKMPTVNLSNEAFEKKFKCDPSNEN 914
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 193/782 (24%), Positives = 339/782 (43%), Gaps = 115/782 (14%)
Query: 191 SGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE--- 245
+G+P QE ES LQ V Y++ + G ++ + S P + +A L+
Sbjct: 282 NGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK-------SGRPIKSIRARLKGKE 333
Query: 246 -KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV
Sbjct: 334 GRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVR 393
Query: 305 NKLCLTYSDGSSSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N + Y +RE G L+ G V R I D D V NR P+
Sbjct: 394 NG---PNEHPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSL 450
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V Q
Sbjct: 451 HKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 415 LLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKA 468
++S + + + D L ++ M + F++ Q L M P +P PA+ K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--LDQVLNMLYWIPDWDGIIPTPAILKP 568
Query: 469 RCSARWTALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVI 516
W+ Q+L +P G FD + LI +++ G D+ T+ S
Sbjct: 569 --VPLWSGKQVLSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSS 626
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLS 562
++ + EKGPE F ++Q ++ L +GFS+ + D +++
Sbjct: 627 GGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVA 686
Query: 563 KAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKS-STLGYL 619
K + ++ KE QA H M+ + D ++ N R A+ LK + + +
Sbjct: 687 KKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQM 746
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
+ + S + + Q + +G Q S GK + + HF + +Y G +
Sbjct: 747 VSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHFSKD-----DYSPESKGFV 800
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H++ RE ++ ++ +E G + + L+ L D+++ YDGT RN
Sbjct: 801 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Query: 740 SNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEIL 799
N +IQF Y + + + K +D+ P S++++E I
Sbjct: 861 GN-VIQFIYGEDGMDAAHI-------------------EKQSIDTIPGSDSAFERRYRID 900
Query: 800 LCRVSFNNDPI----------DRRVILYLND---------CGCGRKYCQERAAYMVKNQL 840
L + DP D ++ L LND R + + + +
Sbjct: 901 LLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRRVFVDGEHNWPLPVNI 960
Query: 841 KRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQE-TLKS 899
KR+ ++++ F I+ KP ++ ++ + G L + LL + DIL + Q+ +
Sbjct: 961 KRI-IQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLL--VVRGKSDILKEAQQNAITL 1017
Query: 900 FC 901
FC
Sbjct: 1018 FC 1019
Score = 45.1 bits (105), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ + L +P LG KC++CG
Sbjct: 17 VQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEGM-A 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H +S++K
Sbjct: 76 ECPGHFGHIELAKPVFHIGFLSKIK 100
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 172/645 (26%), Positives = 281/645 (43%), Gaps = 78/645 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 262 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 320
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 321 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 373
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 374 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 433
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 434 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNAD 493
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFL 444
FDGD ++L PQ+ +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 494 FDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFV 553
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGF-----DSCGDR-- 494
DK + ++ + +P+PA+ K R RWT Q++ V+P +S G +
Sbjct: 554 DKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEISLHSPESSGGQDN 611
Query: 495 ---------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + I S IV + E GPE + F + +Q ++
Sbjct: 612 ADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIE 596
L +G S+ + D K + +Q I Q +T NEL V E
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAKLTAQATANELEALPGMNVRATFE 731
Query: 597 NHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
N + + + S+ + +S S + + Q +G Q+ + +
Sbjct: 732 NKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRI 791
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++
Sbjct: 792 PFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLI 841
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+ YDGTVRN + IIQF Y
Sbjct: 842 DTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYG 885
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 180/750 (24%), Positives = 324/750 (43%), Gaps = 88/750 (11%)
Query: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
G+++P G G ++ I ++E K + D A++++ + +V
Sbjct: 74 AGSAKPKVNHGGCGNVQPKIMFSEWKMVAEFKAD--------EADQAARKIVLTPEKVYN 125
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILE-YLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LK + +E K + + ++L LPVPP + + D DL+ +
Sbjct: 126 ILKNVSDEDSKAMGFNPVLARPEWMLTTVLPVPPPAVRPSIVMDSARAAEDDLTYKLSDI 185
Query: 179 VLKQVEI-IRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + ++ R P+ + + +A E+ G SS+ R P
Sbjct: 186 VKANNNLKLQLERGAAPHIIQEFTQLLQYHIATMLDNEMPGMPVSSQRGSGR------PL 239
Query: 238 STTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
+ + L ++R + K FS+R+VIT D VNE+GVP IA +T+ E V
Sbjct: 240 KSIRQRLRGKHGRIRGNLMGKRVDFSARTVITPDPNLSVNEVGVPRTIALNLTYPEVVTP 299
Query: 294 HNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTV 346
+NI +++L++N D + LR K L G V R + DGD V
Sbjct: 300 YNIARMRQLIENGPMKHPGAKYILRDDGTRTDLRYAKKPSELHLDYGYKVERHVQDGDVV 359
Query: 347 FINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
NR P+ HK S+ + + T ++N + P +ADFDGD +++ QS +AE+
Sbjct: 360 IFNRQPSLHKMSMMGHRIRILPWSTFRLNLSVTTPYNADFDGDEMNMHVAQSPETRAEIE 419
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPR 462
E+ V +Q++S + + D+LL K+ K+ F+++ + M+ + +P+
Sbjct: 420 EIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIERDLVMNVLMWLSTFEGKVPK 479
Query: 463 PALSKARCSARWTALQILQSVLPP-----------------GFDSCGDR----YLIKKSE 501
PA+ K + WT QI ++PP F R I+ E
Sbjct: 480 PAMLKPKVL--WTGKQIFSMLIPPVNLLRKSAQAPERELNEEFTYTDTRVCSLVCIENGE 537
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
V+ G + T+ S +V ++ E G E F DS+Q ++ + L + GFSV + D
Sbjct: 538 VISGIICKQTVGSSSGSLVHVVWNEHGHEATRNFLDSVQAVVNQWLLSRGFSVGIGDTIA 597
Query: 562 SKAALWNIQKEIQA----LYSLLY----HRMSTQN-----ELVDLQIENHIRHVKMLVAK 608
K + I + I A + SL+ H + Q E + ++ + + + K
Sbjct: 598 DKETMQQITRTIAAAKAQVASLIKQAQNHNLEPQPGRTLMETFESKVNSALNTARDKAGK 657
Query: 609 ----FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIAS 659
+ S+ + ++ + S + + Q +G Q + GK F ++TL +A+
Sbjct: 658 SAEQSLRSSNNVKEMVTAGSKGSFINIAQMIACVG-QQNVEGKRIPYGFRNRTLPHFVAA 716
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
+ P A+ G ++ + GL+P E H++ RE ++ ++ SE G + +
Sbjct: 717 DYS---------PEAR-GFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 766
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ + DV++ YDGTVRN + +IQF Y
Sbjct: 767 LIKAMEDVMVRYDGTVRNSLGD-VIQFLYG 795
>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1449
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 181/695 (26%), Positives = 305/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + S G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNSLLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V+ +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++GS FL+ G V+ R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYIIKKGSDFKLFLKYGNLNMIADQLQEGDVIERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + V+ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP P++ K + WT Q+ ++ P D +C D
Sbjct: 594 LPPPSILKPQMM--WTGKQVFNILMRPNKDDPVMVNLDAACREYKPPKDGRPKDLDPNDG 651
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I + GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPPAAAEGMNRLSKLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S+ + + + +++ Y+ + ++ T + + ++ Q+ +
Sbjct: 712 SIGITDVYPSEGLVRSKNELVESAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 771
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S++I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSRYDDTVRN-SSDAIVQFQYG 918
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 152/537 (28%), Positives = 247/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ LP+PA+ K R +W
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLWVPDWDGILPQPAILKPR--PKW 507
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+P G + S G D L+ +++ G ++ ++ + + I+ I
Sbjct: 508 TGKQIISLVVPAGLNLTRPSSEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHVI 567
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKG E + FF+ Q ++ L +GFS+ + D K + I+ + +
Sbjct: 568 FNEKGSEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDKNTIQQIEDAVNKQKEDVAEI 627
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 628 TRSATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKG 687
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 688 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLRGLTPTEF 747
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+ + RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 748 FFHATAGREGLIDTAVKTAETGYIQRCLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 803
>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
Length = 1478
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 181/690 (26%), Positives = 294/690 (42%), Gaps = 100/690 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +Y+P PP C+ DG ST DL+ + L ++ +IRS+
Sbjct: 260 GINPSEGRPEMFLWQYVPAPPICIRPSVAQDGAST-EDDLT-SKLGDIVHISSLIRSALQ 317
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + LQL + Y L+ G K+ R R Q
Sbjct: 318 KGQPIQTIMEQWEYLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQG--------- 368
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D + E+ +P +A +T+ ERV+ NI+ L+E +
Sbjct: 369 -RFRGNLSGKRVDFSGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIK 427
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHT--FLRPGQVVHRRIMDGDTVFINRPPTT 354
+ DG SL+ + +T LR G VV R + DGD + NR P+
Sbjct: 428 RGPGKWPGANIVEKKMDGRK-VSLKHADREYTANTLRVGDVVERHLEDGDIILFNRQPSL 486
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V V T + N +CGP +ADFDGD +++ PQ+ A+ E + L V+
Sbjct: 487 HKLSIMSHYVKVRPWRTFRFNECVCGPYNADFDGDEMNIHVPQTEEARTEAINLMGVKNN 546
Query: 415 LLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + +G + D + + ++ K+ F D+ L M+ + +P PA+ K
Sbjct: 547 LCTPKSGEPIISATQDFITAAYLLSSKENFFDRKTFAHLCMYMVDGKMDIDIPPPAIIKP 606
Query: 469 RCSARWTALQILQSVLPPGFDS---------CGDR----------------YLIKKSEVL 503
A WT Q+ ++ P S C D +++ SEV+
Sbjct: 607 --EALWTGKQVFSVLMRPNKTSPVKVNLDAKCRDYKAVAGQAPDMDPNDGWLVVRNSEVM 664
Query: 504 KGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF--- 559
G D+ T+ S + I +I + GP+ + + L L L GFS+ + D
Sbjct: 665 CGRMDKTTVGSGKKDCIFYTILRDFGPDHAVLAMNRLAKLSARYLTNRGFSIGISDVYPS 724
Query: 560 -SLSKAALWNIQKEIQALYSLLYHRMSTQ---------NELVDLQIENHIRHVKMLVAKF 609
SL L + K L+ S + E ++ +I + V+ +F
Sbjct: 725 KSLEDQKLALVTKAYAECDDLIVQFKSGKLEKATGCNMEETLENKISGILSRVRQQAGEF 784
Query: 610 ILKSSTL--GYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
+ + + LI +KS S S V Q +G Q+ + F +TL HF
Sbjct: 785 CINTLSKWNSPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVADGFQDRTL-----PHF 839
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 840 ----PKNARQPPSK-GFVRNSFFGGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLM 894
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVN 751
L D+ YD TVRN S I+QF + +
Sbjct: 895 KSLEDLSTQYDDTVRN-SSGGIVQFQFGAD 923
Score = 46.6 bits (109), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 45 NPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKND 104
+P LG + G+CE+CG C GHFG++ L +P + HI LKL + Q K+
Sbjct: 72 DPRLGTSSKTGRCETCGEGL-NNCNGHFGHVRLALPAF---HIGYLKLVIAILQEICKD- 126
Query: 105 GVAQRLLSSCCEVKEMLKRI 124
R+L + E ++ LK +
Sbjct: 127 --CARVLLTESERRQFLKEL 144
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 173/666 (25%), Positives = 293/666 (43%), Gaps = 84/666 (12%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
IL LPVPP + P + G ++ + DL+ + + V + R + G P +E
Sbjct: 244 ILTVLPVPPPTVR-PSVVMGATSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIRE 302
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM-------RTLFIR 253
ES LQ + Y++ D+ + Q N KA ++ R +
Sbjct: 303 FESL-LQYHIATYMD--------NDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMG 353
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS+R+VITGD R++E+GVP+ A+ +T+ E V NI LQ+L+ N +
Sbjct: 354 KRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQKLIANGPNIHPGA 413
Query: 310 --TYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR + G L G V R + +GD + NR P+ HK S+ V V
Sbjct: 414 RYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILFNRQPSLHKESMMGHRVRV 473
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQ A+AE+ EL V K ++S +
Sbjct: 474 MPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAELTLVPKNIVSPQRNGPLMG 533
Query: 427 LATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ D L + K+ + FL K L ++ +P PA+ K R RWT Q++
Sbjct: 534 IVQDTLCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAILKPR--PRWTGKQMISM 591
Query: 483 VLPPGFD---------SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
P G + +++ LI +++ G + T+ + ++ +IF
Sbjct: 592 AFPSGLNLLRVDKDGSPLAEKFSPLSDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFN 651
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----FSLSK--AALWNIQKEIQALYS 578
E GP+ ++FF Q ++ L +GFS+ + D +++K A+ N ++E++ + +
Sbjct: 652 EYGPDTCVKFFSGAQTIVGYWLLHNGFSIGIGDTIPDQHTINKIEEAVRNRKQEVEEITA 711
Query: 579 LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS------STLGYLID---------SK 623
+T+N L L N + V++ + + +T L D S
Sbjct: 712 -----SATENTLEALPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSG 766
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q +G Q S GK HF + +Y G ++ +
Sbjct: 767 SKGSAINISQMTALVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSY 820
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + I
Sbjct: 821 LRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-I 879
Query: 744 IQFDYA 749
IQF Y
Sbjct: 880 IQFIYG 885
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 166/632 (26%), Positives = 285/632 (45%), Gaps = 73/632 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + ++ + G+P Q+ E+ LQ V Y++ ++ +
Sbjct: 274 DLTYKLGDIIRANGNVRQAQQEGSPQHILQDFETL-LQYHVATYMDNDIAGQPPALQKSG 332
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 333 RPVKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 382
Query: 281 IAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPG 333
IA+ +T+ E V NI+ L +LV N + SDG+ G L G
Sbjct: 383 IARILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYG 442
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 443 WKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 502
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQ+ +AEV+ L V ++S + + D L + K+ + F+ K +
Sbjct: 503 HVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNI 562
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCG--------------DRY 495
++ +P+PA+ K R RWT QI+ ++P +S D
Sbjct: 563 LLWVPDWDGVIPQPAILKPR--PRWTGKQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGC 620
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI++ +++ G + + + N IV +F E+GP+ + FF+ Q ++ L +GFS+
Sbjct: 621 LIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIG 680
Query: 556 LEDFSLSKAALWNIQKEI---QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
+ D +K + I+K I +A + L + +T NEL L N + V+K + +
Sbjct: 681 IGDTIPNKETIEQIEKAIAKQKAEVTELVEK-ATSNELESLPGMNVRETFESQVSKALNE 739
Query: 613 S-STLGY-----LID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ +T G L+D S S + + Q + +G Q S GK
Sbjct: 740 ARNTAGTKTEDGLLDINNAVQMARSGSKGSTINISQMSALVG-QQSVEGKRIPFGFKYRT 798
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 799 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 853
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 854 RRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 884
Score = 44.7 bits (104), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC +C +
Sbjct: 19 IQFGLFSPEEIKNMSV--CHILYPETMDESKMKPREQGLNDPRLGSIDRQFKCATCDQNM 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP + + K
Sbjct: 77 -SECPGHFGHIELAKPVYHPGFLKKTK 102
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 174/640 (27%), Positives = 284/640 (44%), Gaps = 85/640 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ + Y+ + + KS+
Sbjct: 275 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHIATYMDNDIAGQPKAMQKSN 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 334 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ+LV N D LR + G L G V
Sbjct: 387 TLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V + ++S + + D L + K+ + FL K + M+
Sbjct: 507 QSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMMW 566
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGF-----DSCG-----DRY------- 495
+P PA+ K R RWT Q++ V P G DS G ++Y
Sbjct: 567 VPDWDGVIPPPAIFKPR--PRWTGKQMISMVFPSGLNLMRTDSKGAAPSSEKYSPLQDGN 624
Query: 496 -LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
LI + +++ G ++ + + ++ IF E G + + FF+ Q ++ L +GFS+
Sbjct: 625 VLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSI 684
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHR---------MSTQNELVDLQIENHIRH---- 601
+ D + N Q IQA+ + R +TQN+L L N +R
Sbjct: 685 GIGD------TIPNDQT-IQAIEECVRKRKLEVEEITATATQNKLEPLPGMN-VRETFES 736
Query: 602 ---VKMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
V + A+ ++T L D S S ++ + Q +G Q+ + GK
Sbjct: 737 KVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVE-GKRI 795
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 796 AFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 850
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 851 TAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 889
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 14 IVGIRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTS 63
I I+FGL + +EI S+ L +P LG CE+C
Sbjct: 16 IAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWNCETCEEG 75
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELK 91
+ +C GHFG+IEL P++H ++++K
Sbjct: 76 Q-KECPGHFGHIELATPVFHIGFLTKIK 102
>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
Length = 853
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 145/545 (26%), Positives = 252/545 (46%), Gaps = 51/545 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++++GVP IA+ +T+ E V +NI+ L + V N
Sbjct: 148 RLRGNLMGKRVNFSARTVITGDPNLDLDQVGVPKSIARTLTYPEAVTPYNIHRLTQYVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R +MD D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYIVRDTGERIDLRYHKRVGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 268 MMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D L ++ M + F+D A Q + + +P PA+ K + W
Sbjct: 328 QSNKPVMGIVQDTLAGIRKMTLRDTFIDYAAVQNILFWVPDWDGVVPPPAILKPK--PLW 385
Query: 475 TALQILQSVLPPG-----FDSCG-------DRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T Q+ +P G FD + L+ K +V+ G ++ T+ S ++ +
Sbjct: 386 TGKQMASMAIPAGIFMQRFDDNNPLHSPKDNGMLVYKGQVMYGVVNKKTVGSTAGGLIHT 445
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
IF EKGP FF S+Q ++ L +GFS+ + D +A + N+ I A
Sbjct: 446 IFREKGPYVCARFFSSIQKIVNFWLLHNGFSIGIGDTIADRATMRNVTNTI-ADAKQQVQ 504
Query: 583 RMSTQNELVDLQIE-----------------NHIRHVKMLVAKFILK-SSTLGYLIDSKS 624
R++ + L E N+ R A+ L+ ++ + ++ + S
Sbjct: 505 RITDDAQANTLSPEPGMTLRESFEAAVILVLNNCRDTAGREAEMSLQDTNNVKQMVSAGS 564
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ + Q + +G Q+ + G+ + V+ HF M +Y G ++ +
Sbjct: 565 KGSFINISQMSACVGQQIVE-GRRIAFGFVDRTLPHF-----MRDDYSPESKGFVENSYL 618
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H+++ RE ++ ++ +E G + + L+ L D+++ YDG+ RN + +I
Sbjct: 619 RGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGSARNSLGD-VI 677
Query: 745 QFDYA 749
QF Y
Sbjct: 678 QFTYG 682
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 173/644 (26%), Positives = 290/644 (45%), Gaps = 78/644 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL--EVRG 218
DG S DL+ L +LK + +R S G+P E E + LQ Y+ E+ G
Sbjct: 24 DGTSRGEDDLT-HKLSDILKANQNVRRFESEGSPVHVISEFE-DLLQFHCATYMDNEMAG 81
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ + S P + +A L+ ++R + K FS+R+VITGD V+E
Sbjct: 82 QPQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDE 134
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GH 327
+GVP IA+ +T+ E V +NI +LQELV N D L+ + G
Sbjct: 135 VGVPRSIARNLTYPELVTPYNIEHLQELVRNGPTEHPGAKYVIRDTGERIDLKHHKRAGE 194
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R + DGD V NR P+ HK S+ V V T ++N + P +ADFD
Sbjct: 195 VRLQYGWKVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFD 254
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
GD +++ PQS+ +AE+ E+ V KQ++S + + + D L +++ K+ FL +
Sbjct: 255 GDEMNMHVPQSVETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSR 314
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-------------- 489
+ M+ +PRP + K WT QIL ++P G +
Sbjct: 315 DLVMNILMWVPEWDGRIPRPCIIKP--IPMWTGKQILSLIIPKGINCDGFHSGHPENEKS 372
Query: 490 --SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
S GD + LI+ +VL G + T+ + +V I E G E +F + Q ++
Sbjct: 373 DISPGDTKVLIEDGQVLCGIICKKTVGTSQQGLVHVIMQELGSEAAKKFLNGCQTVVNNW 432
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-------VDLQIEN 597
L GFS+ + D K + I + I A S + + + Q+ L + E+
Sbjct: 433 LLQHGFSIGIGDTIADKDTMETITQTIGAAKSRVQEIILKAQQDNLKCEPGMTIRESFEH 492
Query: 598 HIRH--------VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-- 647
H+ + + + + + ++ S S + + Q + +G Q + +
Sbjct: 493 HVNRELNTARDSAGRSAERSLREENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIP 552
Query: 648 --FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
F +TL HF + D + P ++ G ++ + GL P E H++ RE ++
Sbjct: 553 FGFKFRTL-----PHFTK----DDHSPESR-GFVENSYLRGLTPTEFFFHAMGGREGLID 602
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L DV++ YDGTVRN + +IQF Y
Sbjct: 603 TAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-VIQFCYG 645
>gi|397135960|gb|AFO11475.1| RNA polymerase I, partial [Dipodascus albidus]
Length = 870
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 169/670 (25%), Positives = 294/670 (43%), Gaps = 84/670 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADIIKANANVQRCEQEGAPAHVINEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI+ L + V N D LR + G L+ G V
Sbjct: 186 TLSYPETVTPYNIHKLTQYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ ++ V Q+++ + + + D L ++ + K+ F+D + + +
Sbjct: 306 QSEETRAELSQICLVPLQIITPQSNKPCMGIVQDTLCGIRKLTKRDSFID--YEHMMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P PA+ K + WT QI+ +P G D LI K
Sbjct: 364 FWIPGWNGVVPEPAIVKPK--PLWTGKQIIAQCIPDGIHIRRLDKSPLSPEDDGMLIVKG 421
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ TI + ++ IF EKGPE+ +FF ++Q ++ L +GFS+ + D
Sbjct: 422 EIMYGVINKKTIGASAGGLIDVIFREKGPEKCRDFFGNIQKVVNFWLLHNGFSIGIGDTI 481
Query: 561 LSKAALWNIQKEIQ-------------ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 607
A + +I + I L L + T E + + + +
Sbjct: 482 ADGATMRHITETISEAKSKVQEIINAAQLNKLEREQGMTLRESFEQNVSRTLNQARDNAG 541
Query: 608 KFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
K KS + + ++ S S + + Q + +G Q+ + GK + HF +
Sbjct: 542 KSAEKSLKELNNVKQMVISGSKGSFINISQMSACVGQQIVE-GKRIPYGFADRTLPHFTK 600
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 D-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 655
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLD 783
L DV++ YDGTVRN + I+QF Y + L + + N +D
Sbjct: 656 LEDVMVQYDGTVRNSLGD-ILQFVYGEDG---------------LDSVKVENQQ----ID 695
Query: 784 SSPSSNNSWE 793
S P NN++E
Sbjct: 696 SIPGDNNAFE 705
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 179/707 (25%), Positives = 305/707 (43%), Gaps = 72/707 (10%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + V ++ + +V +LKRI +E + L Y D IL+ +P+PP +
Sbjct: 120 QEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPPPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D S DL+ + + + R ++G P E + LQ V Y
Sbjct: 180 PSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAHIISEF-AQLLQFHVATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + S KA ++R + K FS+R+VIT D
Sbjct: 239 ELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++E+GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 292 NIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
G L G V R + DGD VF NR P+ HK S+ + + T ++N +
Sbjct: 352 YLKKSGDHHLELGYKVERHLNDGDFVFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 471
Query: 441 K-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP---------- 486
+ F++K + M+ +P PA+ K R WT Q+ ++P
Sbjct: 472 RDTFIEKDVFMNILMWWEDFDGKIPAPAILKPR--PLWTGKQVFNLIIPKQINLIRYSAW 529
Query: 487 ------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GF + GD + I++ E+L G + T+ + ++ I+ E GP+ +F
Sbjct: 530 HSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------L 590
Q L+ L FS+ + D A + I + I + + + E
Sbjct: 590 QWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRT 649
Query: 591 VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
+ EN + V K + +S+ L ++ + S + + Q +G Q
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQ 708
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ GK + HF + +Y G ++ + GL P E H++ RE
Sbjct: 709 NVEGKRIPFGFNDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 763
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 764 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 178/705 (25%), Positives = 302/705 (42%), Gaps = 91/705 (12%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVST 166
++L+ + V + K+I + + + F + + +L LPVPP C+ + G+
Sbjct: 123 EKLVITAQFVLQTFKKITDADLEIMGLSAQFARPEWMVLSNLPVPPPCVRPSIVVPGMGR 182
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYLE--VRG----T 219
DL+ L ++K + ++++ + G P E E LQ V + + V G T
Sbjct: 183 GEDDLT-HKLSDIIKANDQLKTAEAEGEPTHILDEYEFL-LQFHVSTFKDNDVAGLPAAT 240
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R V + + K ++R + K FS+R+VITGD +NE+GVPF
Sbjct: 241 QKSGRPVKSL-------RARLKGKEGRIRGNLMGKRVDFSARTVITGDPMLSINEVGVPF 293
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGSKGHTFLRP 332
IA+ +TF E V +N +Q LV N + DG + G L+
Sbjct: 294 SIARNLTFPEMVTSYNFEKMQNLVRNGPTQHPGAKYVIRDDGVRIDLRHRRATGDMALQV 353
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G V R I +GD V NR P+ HK S+ V V T ++N + P +ADFDGD ++
Sbjct: 354 GFCVERHIDNGDVVIFNRQPSLHKMSMMGHHVRVLPFSTFRLNLSVTSPYNADFDGDEMN 413
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
+ PQS A++EVLEL V KQ++S + + D+L ++ K+ FL K F Q
Sbjct: 414 MHVPQSHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSKEFVQN 473
Query: 452 LAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCG 492
L ++ +P P + WT Q+L ++P G + S G
Sbjct: 474 LVLWIPDWNGYIPPPCIQFP--VPLWTGKQLLSLLIPTGINMTTFHAAHPDDEKSYISPG 531
Query: 493 D-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D R I E++ G + T+ + ++ +I+ E G F + Q L+ +
Sbjct: 532 DTRVEIVNGEIIAGIICKRTVGAAAGGLIHTIYNELGEVPTTRFLNGTQTLVNYWFMQNS 591
Query: 552 FSVSLEDFSLSKAALWNIQKEI-------------------QALYSLLYHRMSTQNELVD 592
FS+++ D + + + + I Q L L T E +
Sbjct: 592 FSIAIGDMIADRETMKKVNQSIADAKIEVARCIEEAQRGTLQPLPGL------TVREAFE 645
Query: 593 LQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
++ + + K +S + + ++ S S + + Q A +G Q + +
Sbjct: 646 SRVNQALNKARDDAGKMAERSLPEYNNIKQMVVSGSKGSFVNISQMAACVGQQNVESARI 705
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F ++TL HF + + G ++ + GL P E H++ RE ++
Sbjct: 706 PFGFQNRTL-----PHFTK-----YDQGPVSRGFVENSYLRGLTPQEFFFHAMGGREGLI 755
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L DV++ YDGTVRN I+QF Y
Sbjct: 756 DTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLG-QIVQFCYG 799
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/586 (26%), Positives = 265/586 (45%), Gaps = 62/586 (10%)
Query: 204 NDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSV 263
NDL GQ ++ + ++ + + AR K ++R + K FS+R+V
Sbjct: 342 NDLP---GQPQAMQKSGRAVKSIRARL----------KGKEGRLRGNLMGKRVDFSARTV 388
Query: 264 ITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV----DNKLCLTY--SDGSSS 317
ITGD ++E+GVP IA+ +T+ ERV +NI LQ LV D Y D
Sbjct: 389 ITGDPNLELDEVGVPESIAKNLTYPERVTPYNITALQALVAKGPDELPGARYVVKDSGDR 448
Query: 318 YSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINP 376
LR G + L G +V R + +GD V NR P+ HK S+ A V + T ++N
Sbjct: 449 IDLRYLPSGTSIDLAYGWIVERHLRNGDYVLFNRQPSLHKMSMMAHRVKLLPYSTFRLNL 508
Query: 377 LICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL- 435
+ P +ADFDGD +++ PQS +AE+ ++ V +Q++S + + D L +
Sbjct: 509 SVTPPYNADFDGDEMNMHVPQSEETRAELQQIAWVPRQIVSPQANKPVMGIVQDTLCGIR 568
Query: 436 KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCG 492
K + F+D+ F Q + ++ LP PA+ K + WT QIL +P G +
Sbjct: 569 KFTLRDCFMDRDFVQNIMLWVPEWDGLLPPPAIVKPK--PMWTGKQILSMCIPRGVNLFI 626
Query: 493 DR------------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
D L+ E+ G ++ T+ + +V IF EKGPE FF +Q
Sbjct: 627 DNEAHSSLPDDDSGVLVDDGEIYYGVINKKTVGAQRESLVDLIFREKGPEICRLFFTGVQ 686
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-TQNELVDLQIENHI 599
++ L +GFS+ + D + + I IQ + +S Q +L++ + I
Sbjct: 687 KVVNFWLLHNGFSIGIGDTVADRDTMRTITDYIQTAKDEVAVFISKAQQDLIEPEPGMTI 746
Query: 600 RHV----------------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
R + + S+ + ++ + S + + Q + +G Q+
Sbjct: 747 RETFESKVTGSLNRARDTAGQSAERSLAASNNVKQMVVAGSKGSFINISQMSACVGQQIV 806
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
+ GK HF + D + P A+ G ++ + GL P E H+++ RE +
Sbjct: 807 E-GKRIPFGFRYRSLPHFTK----DDHTPEAR-GFVENSYLRGLTPQEFFFHAMAGREGL 860
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 861 IDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGD-IVQFVYG 905
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 40 ASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
A LA+P +G KC++CG +C GHFG+IEL P+YH ++++K
Sbjct: 59 AGGLADPRMGTIDRNFKCQTCGEGM-AECPGHFGHIELGRPVYHVGFMTKVK 109
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 166/632 (26%), Positives = 285/632 (45%), Gaps = 73/632 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + ++ + G+P Q+ E+ LQ V Y++ ++ +
Sbjct: 274 DLTYKLGDIIRANGNVRQAQQEGSPQHILQDFETL-LQYHVATYMDNDIAGQPPALQKSG 332
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 333 RPVKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 382
Query: 281 IAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPG 333
IA+ +T+ E V NI+ L +LV N + SDG+ G L G
Sbjct: 383 IARILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYG 442
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 443 WKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 502
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQ+ +AEV+ L V ++S + + D L + K+ + F+ K +
Sbjct: 503 HVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNI 562
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCG--------------DRY 495
++ +P+PA+ K R RWT QI+ ++P +S D
Sbjct: 563 LLWVPDWDGVIPQPAILKPR--PRWTGKQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGC 620
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI++ +++ G + + + N IV +F E+GP+ + FF+ Q ++ L +GFS+
Sbjct: 621 LIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIG 680
Query: 556 LEDFSLSKAALWNIQKEI---QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
+ D +K + I+K I +A + L + +T NEL L N + V+K + +
Sbjct: 681 IGDTIPNKETIEQIEKAIAKQKAEVTELVEK-ATSNELESLPGMNVRETFESQVSKALNE 739
Query: 613 S-STLGY-----LID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ +T G L+D S S + + Q + +G Q S GK
Sbjct: 740 ARNTAGTKTEDGLLDINNAVQMARSGSKGSTINISQMSALVG-QQSVEGKRIPFGFKYRT 798
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 799 LPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 853
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 854 RRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 884
Score = 43.5 bits (101), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASIS---------DCSISHASQ-LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ + + Q L +P LG KC +C +
Sbjct: 19 IQFGLFSPEEIKNMSVAHILYPETMDESKMKPREQGLNDPRLGSIDRQFKCATCDQNM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP + + K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFLKKTK 102
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 196/726 (26%), Positives = 318/726 (43%), Gaps = 100/726 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ KRI +E + L G P+ G YI +Y+ VPP + DG S DL
Sbjct: 218 KVLDLFKRISDEDCELL---GLRPEYGRPEQYIWQYISVPPVAIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E + LQL+V Y+ E+ G V ++
Sbjct: 274 TVKLTEIVFSNALIKQGLVKGAPTAQFME-QWEFLQLSVAMYINSELPG-------VPSQ 325
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
G Q P L+ + F SG FS R+VI+ D R++E+ VP +A+ +
Sbjct: 326 LG--QKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKIL 383
Query: 286 TFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQV 335
T+ ERV HNI+ L++ V N S+G Y L+ G++ LR G +
Sbjct: 384 TYPERVTGHNIDRLKKAVRNGCDVHPGANYVTAGSNGFKKY-LKFGNRTAIADGLRIGDI 442
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R ++DGD NR P+ HK S+ + V + ++N +CGP +ADFDGD ++L
Sbjct: 443 VERHVIDGDIALFNRQPSLHKLSIMCHRIKVRPWRSFRLNECVCGPYNADFDGDEMNLHV 502
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLA 453
PQ+ A+ E LEL SV+ L++ NG + D + + ++ ++ +F + FTQ +
Sbjct: 503 PQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQICS 562
Query: 454 MFALSPL----PRPALSKARCSARWTALQILQSVLPPGFDS------------------- 490
FA + L P PA+ K WT Q+ ++ P S
Sbjct: 563 YFADADLQIDIPPPAIWKP--VRLWTGKQVFNVLMRPNRQSKVFVNVESKCNKEDKPQAA 620
Query: 491 CGDRY-------------LIKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFF 536
C R +I SE++ G D+ T+ S + V + + GP E
Sbjct: 621 CYPRMRPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAM 680
Query: 537 DSLQPLLMENLFADGFSVSLEDF-----------SLSKAALWNIQKE-IQALYSLLYHRM 584
+ + L L GFS+ + D S+ + A ++ I+A LL ++
Sbjct: 681 NRVAKLCARYLANIGFSLGINDVIPGPVLSGKKDSMVEDAYAACERLIIRAKKGLLENKP 740
Query: 585 ST-QNELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLG 639
Q + ++ +I + V+ V + +K S LI + S +V V Q +G
Sbjct: 741 GCDQEQTLEAEISKVLSDVRGNVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACVG 800
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q+ G + HF P P +K G ++ F+ GL P E + H+IS
Sbjct: 801 QQII-AGHRVPDGFQDRSLPHF----PKKSRDPPSK-GFVRNSFYTGLTPTEFLFHAISG 854
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLF 759
RE +V ++ +E G + + LM L D+V YD +VRN ++QF Y + L
Sbjct: 855 REGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVG-GVVQFRYGDDGLDPACLE 913
Query: 760 PAGEPV 765
+PV
Sbjct: 914 GDAQPV 919
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 161/599 (26%), Positives = 267/599 (44%), Gaps = 74/599 (12%)
Query: 206 LQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
LQ V Y+ + + KS+R V A G K ++R + K FS
Sbjct: 290 LQYHVATYMDNDIAGQPKAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFS 342
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYS 319
+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L ++V+N + + Y
Sbjct: 343 ARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNI---HPGAKYI 399
Query: 320 LRE-GSK----GHTFLRPGQV------VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
+R G K G+ PG++ V R I+DGD + NR P+ HK S+ A V V
Sbjct: 400 IRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMP 459
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQS ++AE+ EL V ++S + +
Sbjct: 460 YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIV 519
Query: 429 TDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L + K+ + FL K + M+ +P+PA+ K R RWT QI+ VL
Sbjct: 520 QDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPR--PRWTGKQIISMVL 577
Query: 485 PPGFD---------SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK 527
P G + +R+ I E++ G F + T+ + ++ +IF E
Sbjct: 578 PSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEY 637
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ------------- 574
GP+ + FF+ Q ++ L +GFS+ + D + I++ ++
Sbjct: 638 GPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDAKTVAKIEEAVRERKDEVEDITDDA 697
Query: 575 ---ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSK 630
AL L + E + N+ R V + LK G + S S +
Sbjct: 698 TRDALDPLPGMNIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTIN 757
Query: 631 VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPY 690
+ Q +G Q S GK HF + +Y G ++ + GL P
Sbjct: 758 ISQMMAIVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPT 811
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 812 EFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYG 869
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 171/645 (26%), Positives = 279/645 (43%), Gaps = 78/645 (12%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG ST DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 264 DGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 322
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 323 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 375
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 376 HEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 435
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 436 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNAD 495
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFL 444
FDGD ++L PQ+ +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 496 FDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKMCRRDTFI 555
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDSCGDR 494
+K L ++ + +P+PA+ K R RWT QI+ V+P P D
Sbjct: 556 EKEMVMNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPKEISLNSPESADALDN 613
Query: 495 ---------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + I S IV + E GPE + F + +Q ++
Sbjct: 614 ADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 673
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIE 596
L +G S+ + D K + +Q I Q +T NEL V E
Sbjct: 674 WLLNNGHSIGIGDTVPDKQTIEKVQAHIDTQKAEVARLTAQATANELEALPGMNVRATFE 733
Query: 597 NHIR--------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
N + + + S+ + +S S + + Q +G Q+ + +
Sbjct: 734 NKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRI 793
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++
Sbjct: 794 PFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLI 843
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+ YDGTVRN + ++QF Y
Sbjct: 844 DTAVKTAETGYIQRRLVKALEDLSAQYDGTVRNSLGD-VVQFLYG 887
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI + S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKSMSV--CHILYPETMDETRTKPRDGGLNDPLLGSIDRGLKCKTC-TQT 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIRKVK 102
>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
Length = 872
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 170/694 (24%), Positives = 307/694 (44%), Gaps = 74/694 (10%)
Query: 108 QRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+R L + E+ + K I P++ + + Y + ++ L VPP + + +
Sbjct: 11 ERRLLTPSEILSVFKHISPDDCFRLGFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTAR 70
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VR 217
DL+ + + + + R G+P E E+ LQ V Y++ ++
Sbjct: 71 GEDDLTFKLADILKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQ 129
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
T + + + AR K ++R + K FS+R+VI+GD ++++GV
Sbjct: 130 KTGRPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGV 179
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFL 330
P IA+ +++ E V +NI+ L E V N D LR + G L
Sbjct: 180 PISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIAL 239
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
+ G V R +MD D V NR P+ HK S+ + V V T ++N + P +ADFDGD
Sbjct: 240 QYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDE 299
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFT 449
++L PQS +AE+ E+ +V Q++S + + + D L + K+ + F++ +
Sbjct: 300 MNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIE--YD 357
Query: 450 QQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD------ 493
Q + M P +P PA+ K + WT Q+L +P G FD +
Sbjct: 358 QVMNMLYWIPVWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKD 415
Query: 494 -RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI E++ G D+ T+ S ++ ++ EKGP+ + F S+Q ++ L +GF
Sbjct: 416 SGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVNYWLLHNGF 475
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-----VDL---------QIE 596
S+ + D + + N+ I+ + + + QN+L + L ++
Sbjct: 476 SIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMTLRESFEHNVSRVL 535
Query: 597 NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 536 NQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFAD 594
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 595 RTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 650 IQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|156043073|ref|XP_001588093.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154694927|gb|EDN94665.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1459
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 172/689 (24%), Positives = 297/689 (43%), Gaps = 93/689 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +++P PP C+ P ++ + DL+ A L +++ +IR++
Sbjct: 252 GINPAEGRPEMFLWQFVPAPPICIR-PSVAQDGGSNEDDLT-AKLAEIVNMSSLIRAALQ 309
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + + LQL + Y L+ G K+ R R Q
Sbjct: 310 KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++E+ VP +A+ +T+ ERV NI L++ V
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVI 419
Query: 305 N-------KLCLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTTH 355
N + D + SL+ + + FL+ G VV R + DGD V NR P+ H
Sbjct: 420 NGPNVHPGAQQIVKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLH 479
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+ L
Sbjct: 480 KLSIMSHYAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNL 539
Query: 416 LSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+ NG + D + + ++ K+ F D+ + M+ + LP PA+ K +
Sbjct: 540 STPKNGEPIISATQDFITAAYLLSSKENFFDRKTFTNICMYMVDSNLHLQLPPPAILKPQ 599
Query: 470 CSARWTALQILQ------------------------SVLPPGFDS---CGDRYL-IKKSE 501
A WT Q+ +++PPG+ + D +L I+ SE
Sbjct: 600 --ALWTGKQVFSILMRPNKQDNILVNVDAKCRDFVPNMVPPGYANDMEANDGWLVIRNSE 657
Query: 502 VLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF- 559
V+ G D+ T+ S + I I + GP+ + + L L L GFS+ + D
Sbjct: 658 VMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVY 717
Query: 560 ----------SLSKAALWNIQKEIQALYSLLYHRMS--TQNELVDLQIENHIRHVKMLVA 607
L AA ++ I++ + + + + E ++ ++ + V+
Sbjct: 718 PSEELNKSKARLIAAAYAECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAG 777
Query: 608 KFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
K L+ SS+ + +S S + V Q +G Q+ G + + HF
Sbjct: 778 KECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIG-GSRVQEGFQDRTLPHF-- 834
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
P P AK G + FF GL PYE + H++S RE +V ++ +E G + + LM
Sbjct: 835 --PKHSKQPPAK-GFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKS 891
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
L D+ YD TVR I+QF + +
Sbjct: 892 LEDLSTQYDDTVR-TSGGGIVQFQFGADG 919
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSEP 65
++FG+ + ++I + + S + N P LG + G+CE+C
Sbjct: 25 LKFGILSNQDIVNQGVIEVSNKTLYNVDNGRTPIPHGPLDPRLGTSSKAGRCETCDKGLQ 84
Query: 66 GKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
C GHFG++ LP+P + HI LKL + Q K R+L + E ++ L+ +
Sbjct: 85 -DCNGHFGHVRLPLPAF---HIGYLKLIIMILQNICK---TCARVLLTDAERRQFLREL 136
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 173/687 (25%), Positives = 296/687 (43%), Gaps = 71/687 (10%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
D DG T DL+ + + + R GTP +E E+ LQ V Y+
Sbjct: 168 DGGDG-PTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETL-LQFHVATYMSNDT 225
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ + KS R V A + K ++R + K FS+R+VITGD +
Sbjct: 226 AGQPQALQKSGRPVKAI-------RARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSL 278
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLR-EGSK 325
+E+GVP IA+ +T+ E V +NI L +LV N D LR
Sbjct: 279 DEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPGARYVIRDTGERIDLRFHRRA 338
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
G L+ G V R I+DGD + NR P HK S+ V V T ++N + P +AD
Sbjct: 339 GDLVLQYGWKVERHIVDGDXIIFNRQPYXHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 398
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQS +AEV +L V ++S + + + D L + K+ + FL
Sbjct: 399 FDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFL 458
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC---------G 492
++ + ++ +P+PA+ K + WT QI+ V+P G +
Sbjct: 459 NQEQVMNILLWVPEWDGIIPQPAVLKP--TPLWTGKQIVSLVIPAGLNLVKGSDYAPLKD 516
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D + E++ G ++ + + + I+ ++ EKGPE + FF+ Q ++ L +GF
Sbjct: 517 DGIFVSSGELMFGLLNKKVVGAAMGGIIHIVYNEKGPEAAMNFFNGAQAVVNYWLLHNGF 576
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI 610
S+ + D + + I++ + A + +M+T++ L L N + V+K +
Sbjct: 577 SIGIGDTIPDRETIRLIEEAVNAQKREVAEITQMATESRLDTLPGMNVRETFESRVSKAL 636
Query: 611 LKS---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
K+ + + S S + + Q +G Q S GK F
Sbjct: 637 NKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKY 695
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y G ++ + GL P E H+++ RE + ++
Sbjct: 696 RTL-----PHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGPIDTAVKT 745
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAA 770
+E G + + L+ L DV+ YDGT+RN + I+QF Y + + P + V +
Sbjct: 746 AETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLDGAHIEPQRLDIIVCSD 804
Query: 771 TAMSNPAYKAVLDSSPSSNNSWELMKE 797
++D +P + S E +++
Sbjct: 805 AKFEKDFRIDLMDDNPRTTVSAEFLEQ 831
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 225/880 (25%), Positives = 357/880 (40%), Gaps = 170/880 (19%)
Query: 11 EGQIVGIRFGLATQKEICTASISDC---------SISHASQLANPFLGLPLEFGK-CESC 60
E I GI+FG+ + EI S+ + + +P LG +E G+ C C
Sbjct: 5 EKVIKGIKFGILSPDEIRRMSVVQIVSPETYDEDGTPISGSVMDPRLGA-IEPGQTCPIC 63
Query: 61 GTSEPGKCEGHFGYIELPIPI---YHPSHISEL-------------------KLTMYAFQ 98
G + C GHFG+IEL +P+ + HI +L K +Y +
Sbjct: 64 GNTMKA-CPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEIEKYMVYLRK 122
Query: 99 LQIKNDGVAQRL----------LSSC---------------------------------C 115
L+ + +A+R ++ C
Sbjct: 123 LKARYPYLAKRFSEFIKKKAIKVTVCPHCGAKQPKIKLEKPTTFVEQHEESKEVVRLNPL 182
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V+ L+RIP E + L GY P+D + LPVPP + P I S D
Sbjct: 183 TVRSRLERIPNEDIELL---GYDPRDSRPEWMVFTVLPVPPTSIR-PSILIETGIRSEDD 238
Query: 172 SIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L +++ E +R S G P ++ LQ V YL EV G +
Sbjct: 239 LTHKLVDIVRTNERLREHISAGAPQIIIDDLWEL-LQYHVTTYLDNEVPGLPPAKHR--- 294
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P T L+ F SG +S+R+VI+ + Y +NE+GVP ++A+
Sbjct: 295 ----SGRPLKTLAQRLKGKEGRFRGNLSGKRVDYSARTVISPEPYLSINEVGVPIDVAKI 350
Query: 285 ITFEERVNVHNINYLQELVDNKL-------CLTYSDGSS---SYSLREGSKGHTFLRPGQ 334
+T E+V NI +++LV N + DG Y S + L PG
Sbjct: 351 LTVPEKVTEWNIEEMRKLVINGPNRWPGANYIITPDGRRIDLRYVKDRKSVAES-LAPGY 409
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R + DGD NR P+ H+ S+ + V T +++ +C P +ADFDGD ++L
Sbjct: 410 IVERHVRDGDIAIFNRQPSLHRMSMMGHIIKVLPGKTFRLHLAVCPPYNADFDGDEMNLH 469
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL- 452
PQ+ A+AE L V+ +L+ G + + D + ++ K L K L
Sbjct: 470 IPQTEDARAETRLLLKVQNHILTPRYGGIIIGAIQDYISGAYILTIKTTLLKKEDVIDLL 529
Query: 453 -AMFALSPLPRPA-LSKARCSARWTALQILQSVLPPGFDSCG------------------ 492
A + LP PA LS R WT QI+ LP F+ G
Sbjct: 530 SAAGVVKELPEPAILSPKRL---WTGKQIISMFLPEDFNYHGKANISSGPLKCEDIECFW 586
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFF----EKGPEEVLEFFDSLQPLLMENL 547
D Y +++K ++L G D+ TI + E S+ + E G E V F D + + + L
Sbjct: 587 DSYVVVRKGKLLMGVLDKKTIGA---EQQDSLLYWLAKEYGVEYVALFMDHVFRMFIRVL 643
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 607
GF++ L+D ++ + N +KEI ++ S ELV +E + V
Sbjct: 644 EKRGFTLRLDDVAIDE----NTRKEI---LEIIKEAFSKVEELVKQYVEGKLEVVPGRSL 696
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQ----QAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
+ L+ L L +++ + V + F+ + RG + T +
Sbjct: 697 EESLEIKILEILAEARDKAGEVAVNRLDPFNNAFIMARTGARGNVLNLTQMSATLGQMTV 756
Query: 662 --ERIYPMDLNYPTAKY----------GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
ERI+ + P + Y G + F+ GL P E H+ RE +V ++
Sbjct: 757 RGERIWRGYMGRPISSYGQNDLGPLARGFVVNSFYSGLSPTEMFMHAAGGREGLVDTAVR 816
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G + + L+ L+D+ + YDGTVR+ +NSIIQF Y
Sbjct: 817 TSQSGYMQRRLINALQDLYVEYDGTVRD-STNSIIQFVYG 855
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 177/707 (25%), Positives = 304/707 (42%), Gaps = 72/707 (10%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q + V ++ S +V +LK+I +E L Y D IL+ LP+PP +
Sbjct: 120 QDQYMPEPVERKQQLSAEKVLSILKQISDEDCVTLGLNPKYARPDWMILQVLPIPPPSVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D + DL+ + + + R ++G P E + LQ + Y
Sbjct: 180 PSVMMDTSARSEDDLTHQLAMIIRHNNNLKRQEQNGAPTHIINEF-AQLLQFHIATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + + Q KA ++R + K FS+R+VIT D
Sbjct: 239 DLPGQPRATQRSGRPIKS---ICQ----RLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++E+GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 292 NIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIREDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
L G V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 352 FLKKSSDRHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMF 439
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL KV
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTK 471
Query: 440 KKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K + M+ +P P + K + WT Q+ ++P +
Sbjct: 472 RDTFIEKDVFMNILMWWEDFDGKIPAPTILKPK--PLWTGKQLFSLIIPKQINLIRFSAW 529
Query: 490 ---------SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
+ GD + I+K E++ G + T+ + ++ I+ E GP+ +F
Sbjct: 530 HLDSEVGEITPGDTVVRIEKGELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNEL------- 590
Q L+ L GFS+ + D A + I + I + + +M+ + +L
Sbjct: 590 QWLVNYWLLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGRT 649
Query: 591 VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGL--------QL 642
EN + V + A+ SS L +S + A+ + F+ + Q
Sbjct: 650 TMESFENRVNQV-LNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ 708
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ GK V+ HF + +Y G ++ + GL P E H++ RE
Sbjct: 709 NVEGKRIPFGFVDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 763
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + DV++ YDGTVRN + +I+F Y
Sbjct: 764 LIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIEFLYG 809
>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 888
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 204/727 (28%), Positives = 320/727 (44%), Gaps = 112/727 (15%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
E+ E L RIPE + + G P++ +L +PV P P + ++ S D
Sbjct: 183 EIWERLSRIPEGDLRVV---GIDPKEARPEWMVLRVIPVVP-----PSVRPSITLESGDR 234
Query: 172 SIAMLKKVLKQVEIIRSSR-------SGTPNFESQEVESNDLQLAVGQYL--EVRGTAKS 222
S L K V+IIR ++ +G+P+ +++ N LQ V Y E+ G +
Sbjct: 235 SEDDLTH--KLVDIIRVNQRLKENIDAGSPSLVIEDL-WNLLQFHVATYFDNELPGIPPA 291
Query: 223 SRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
S P T L+ + R K FSSR+VI+ D +NE+GVP
Sbjct: 292 RHR-------SGRPLRTLAQRLKGKEGRFRGSLAGKRVDFSSRTVISPDPNLSINEVGVP 344
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNKL-------CLTYSDGSS---SYSLREGSKGHT 328
++A+ +T E+V NI L++LV N + DGS Y T
Sbjct: 345 IDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGANYIIKPDGSRIDLRYVKHREEISQT 404
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+PG +V R +MDGD V NR P+ H+ S+ A V V T ++N L+ P +ADFDG
Sbjct: 405 -LKPGYIVERHLMDGDVVLFNRQPSLHRISIMAHIVKVLPYKTFRLNLLVTIPYNADFDG 463
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA 447
D ++L PQS A+AE EL V++ +++ G + D + ++ +K LDK
Sbjct: 464 DEMNLHVPQSEEARAEARELMLVQEHIMTPRYGAPIIGGLHDYISGSYLLTRKDALLDKK 523
Query: 448 FTQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFDSCG------------- 492
+L PL PA+ K WT QI+ LP G + G
Sbjct: 524 SALRLLYIGNNCDPLVEPAIIKP--GPYWTGKQIVSMFLPKGLNYVGRASVAPASGKCDE 581
Query: 493 -----DRY-LIKKSEVLKGDFDRDTI-----PSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
D Y LIK ++L G FD+ I +V++EIV E G E+ E D +
Sbjct: 582 EYCENDGYVLIKDGKLLLGVFDKQAIGAEKHGTVLHEIVR----EFGVEKAKELMDGMFK 637
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHI 599
+ + L GF++ ++ + + A +I++ +Q + R EL + +
Sbjct: 638 VFIAYLDMHGFTMGVDSVEIPREAEDDIREILQEAEKKVEDLIRQYESGELQPMPGKTRK 697
Query: 600 RHVKMLVAKFILKSSTLGYLIDSK---------------SDSAVSKVVQQAGFLGLQLSD 644
++ L+ + ++ T + SK + ++ + Q A +G Q S
Sbjct: 698 ETLEDLIMNVLAEARTRAGEVTSKHLGLLNHAVIMAKTGARGSMLNLTQMAAVVG-QQSV 756
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
RGK + HF + DL+ P AK G + F GL P E H+IS RE +V
Sbjct: 757 RGKRIERGYTGRALPHFVK---GDLS-PLAK-GFVYSSFRRGLSPVEFFFHAISGREGLV 811
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVN----ARKSHSLFP 760
++ ++ G +++ L + ++D + YDGTVRN IIQF Y + AR H
Sbjct: 812 DTAVRTAQSGYMYRRLQSAMQDFYVSYDGTVRN-SEGMIIQFRYGEDSVDPARSDH---- 866
Query: 761 AGEPVGV 767
G+PV V
Sbjct: 867 -GKPVDV 872
>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1403
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 193/722 (26%), Positives = 309/722 (42%), Gaps = 92/722 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ KRI +E + L G P G YI +Y+ VPP C+ DG S DL
Sbjct: 218 KVLDLFKRISDEDCELL---GLRPAHGRPEEYIWQYISVPPVCIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E LQL+V Y+ E+ G R
Sbjct: 274 TVKLTEIVFTNALIKQGLSKGAPTAQFME-HWEFLQLSVAMYINSELPGVPSQPGQKPMR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
V + K + R K FS R+VI+ D R++E+ VP +A+ +T+ E
Sbjct: 333 GFVQR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPE 387
Query: 290 RVNVHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHT--FLRPGQVVHRR 339
RV HNI L++ V N C + + GSS + L+ G++ LR G V R
Sbjct: 388 RVTPHNIEGLKQAVRNG-CDVHPGANYVTAGSSGFKKFLKFGNRNAVADTLRVGDTVERH 446
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I++GD V NR P+ HK S+ V + + ++N +CGP +ADFDGD ++L PQ+
Sbjct: 447 IINGDIVLFNRQPSLHKLSIMCHRVKIRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTE 506
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFAL 457
A+ E LEL SV+ L++ NG + D + + ++ +K +F ++FTQ FA
Sbjct: 507 EARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFTQICCYFAD 566
Query: 458 SPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C------------- 491
+ + P PA+ K WT QI ++ P DS C
Sbjct: 567 ADMQIDIPPPAIWKP--VRLWTGKQIFNVLMRPNKDSKVFVNVESKCNKPQEPKAEFYPR 624
Query: 492 ---------GDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQ 540
D +L I SE++ G D+ T+ S + I I + GP E + L
Sbjct: 625 MKPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRLA 684
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQ 587
L L GFS+ + D + ++ Y+ ++ Q
Sbjct: 685 KLCARWLANFGFSLGINDVIPGPILAAKKDELVEKAYADCLDLIAQAKKGKLENKPGCNQ 744
Query: 588 NELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLS 643
+ ++ I + + V+ V + +K S LI + S +V V Q +G Q+
Sbjct: 745 EQTLEALISSVLSKVRDAVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQII 804
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL E + H+IS RE +
Sbjct: 805 -AGHRVPDGFQDRSLPHF----PKKSKEPPSK-GFVRNSFYSGLRATEFLFHAISGREGL 858
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGE 763
V ++ +E G + + LM L D+ YD +VRN + ++QF Y + L +
Sbjct: 859 VDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRN-STGGVVQFTYGDDGLDPACLEGDAQ 917
Query: 764 PV 765
P+
Sbjct: 918 PI 919
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 173/670 (25%), Positives = 290/670 (43%), Gaps = 95/670 (14%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
IL LPVPP + P + G DL+ L ++K +R+ + + +
Sbjct: 143 ILTLLPVPPPQVR-PSVMRGGLRNEDDLT-NKLGDIVKNNNTLRNLEATGAVAHAIREQI 200
Query: 204 NDLQLAVGQYLE----------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
+ +Q V Y+ VRG +++ + + RF K ++R +
Sbjct: 201 DLVQYHVATYMNNELPGIMPATVRGGSRAIKSIGQRF----------KGKEGRVRGNLMG 250
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------- 305
K FS+R+VIT D R++E+GVPF IA+ +T+ E V +NI+ +Q+LV+N
Sbjct: 251 KRVDFSARTVITPDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPGA 310
Query: 306 ---------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 356
K+ L Y S L G K V R I DGD V NR P+ HK
Sbjct: 311 KYIEREDGFKVNLAYVRNRSELQLELGYK----------VIRHIRDGDYVLFNRQPSLHK 360
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
S+ + V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++
Sbjct: 361 MSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTHQTRAEVQELMLVPHCIV 420
Query: 417 SSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSA 472
S + + D LL + ++ FL++ L M +P+PA+ K R
Sbjct: 421 SPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMNLLMHVGDWDGVIPKPAIYKPR--P 478
Query: 473 RWTALQILQSVLPP----GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVI 516
WT Q+ +LPP F+ S GD + I + +++ G D+ T+ S
Sbjct: 479 LWTGKQVFSLILPPVNIIRFNITHPDDEKTDISPGDTKVYISRGQLICGIVDKRTVGSSA 538
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL 576
N ++ + E GP+ +Q L+ + S+ + D A + N+ IQ
Sbjct: 539 NGLIHITWKEFGPKITDTLISQIQVLVNHYILQRRQSIGIGDTIADDATMRNVIDTIQGA 598
Query: 577 YS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKF---------------ILKSSTLGYL 619
L R + + ELV L + + + V K +LKS+ + +
Sbjct: 599 KEEVKLLVRKAQEKELVLLPGKGMMESFETEVNKVLNGARDKSGASAQRSLLKSNNIKRM 658
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
+ + S + + Q +G Q + GK + HF +D P ++ G +
Sbjct: 659 VSAGSKGSFINISQICACVG-QQNVEGKRIAYGFHRRTLPHFV----LDDLGPESR-GFV 712
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H++ RE ++ ++ +E G + + L+ + D+++ YDGTVRN C
Sbjct: 713 ENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDIMVRYDGTVRNSC 772
Query: 740 SNSIIQFDYA 749
N I++F Y
Sbjct: 773 -NHIVEFLYG 781
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 177/698 (25%), Positives = 300/698 (42%), Gaps = 79/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------ILKRISDEDCVLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPXQPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 298 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 357
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 358 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 417
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 418 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 477
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P P + K R WT Q+ ++P GF
Sbjct: 478 FMNILMWWEDFDGKIPAPTILKPR--PLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFI 535
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 536 TPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 595
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI 599
+GFS+ + D + + I + I + + + E + EN +
Sbjct: 596 QNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRV 655
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 656 NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPY 714
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
++ HF + +Y G ++ + GL P E H++ RE ++ ++ S
Sbjct: 715 GFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
Length = 983
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/537 (27%), Positives = 244/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 310
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR HK S
Sbjct: 311 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIXFNRQXXXHKES 370
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 371 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 430
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 431 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKP--LAMW 488
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G ++ ++ + ++ +
Sbjct: 489 TGKQILSLVIPTGLNLLRGSKEGFSPLNDDGLLISGGELMYGLLNKKSVGASGGGVIHIV 548
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+K + +
Sbjct: 549 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIEKAVSTQKDEVTDI 608
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 609 TRSATENELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKG 668
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 669 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 728
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 729 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 784
>gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus fulgidus DSM
4304]
gi|2648656|gb|AAB89365.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Archaeoglobus
fulgidus DSM 4304]
Length = 867
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 192/712 (26%), Positives = 314/712 (44%), Gaps = 91/712 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V+E L++IP++ L G P+ + ++L LPVPP + I + DL
Sbjct: 174 DVREWLEKIPDDD---LPAFGINPKATRPEWFVLTVLPVPPVTVRPSIILETGQRSEDDL 230
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVES--NDLQLAVGQYL--EVRGTAKSSRDVD 227
+ ++ + + + +G P Q +E LQ V Y+ EV G +
Sbjct: 231 THKLVDIIRINQRFMENKEAGAPQ---QILEDLWELLQYHVTTYIDNEVSGIPPARHR-- 285
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ F SG FS+R+VI+ D +NE+GVP EIA+
Sbjct: 286 -----SGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPCLSINEVGVPREIAE 340
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSKGHTF----------LRP 332
+T V NI+ +E V L ++Y +R +G + L P
Sbjct: 341 ELTVPIYVTPQNIDMAREFV-----LRSEHPKANYIVRPDGRRIRVIESNKEELAEKLEP 395
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G +V R++MDGD V NR P+ H+ S+ A V V T ++NP +C P +ADFDGD ++
Sbjct: 396 GWIVERQLMDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTFRLNPAVCPPYNADFDGDEMN 455
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQL 452
L PQSL A+AE L +V++ +LS G + D + L ++ + +K FT++
Sbjct: 456 LHVPQSLEAQAEAKILMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRG---EKKFTREE 512
Query: 453 AMFALSPLPRPALSKARCSARWTALQILQSVLP-----------PGFDSCG------DRY 495
AM L L +S+ +T +I +LP G + C D Y
Sbjct: 513 AMELLRSL---DISEIPVKDEYTGKEIFSFILPDITLEFKAEICQGCEECKGAECEYDAY 569
Query: 496 -LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+I+ ++LKG D + + I+ I + G E +F D + L + + GF+V
Sbjct: 570 VIIENGKLLKGTIDEKAVGAFKGIIIDEIARKYGKEMAKKFIDDMTQLAIRIISKLGFTV 629
Query: 555 SLEDFSLSKAALWNIQ---KEIQALYSLL---YHRMSTQN----------ELVDLQIENH 598
++D + A I+ KE + + L Y R + E+ +Q+
Sbjct: 630 GIDDEDIPPEAAEQIEEVLKEAENEVNRLIEAYRRGDLEPMPGRSIEETLEMRIMQVLGR 689
Query: 599 IRHVKMLVAKFILKSSTLGYLID-SKSDSAVSKVVQQAGFLGLQLSDRGKFYSK--TLVE 655
R +A+ L ++ S + ++ + Q A +G Q S RG+ S+ T
Sbjct: 690 ARDRAGKIAQRHLGMDNAAVIMAVSGARGSMLNLTQMAACIGQQ-SVRGERISRGYTYTN 748
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
SHF+ P DL G ++ + GL P E H+ RE +V ++ S+ G
Sbjct: 749 RTLSHFK---PGDLG--AEARGFVRSSYKKGLSPVEFFFHAAGGREGLVDTAVRTSQSGY 803
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV 767
L + ++ L+D+ + YDGTVR S +++QF Y + F G+PV V
Sbjct: 804 LQRRMINALQDLKVEYDGTVREQTSGALVQFRYGEDGVDPMRSF-RGKPVDV 854
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 171/634 (26%), Positives = 291/634 (45%), Gaps = 77/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + ++ + G+P Q+ E+ LQ V Y++ + G + +
Sbjct: 190 DLTYKLGDIIRANGNVRQAQQEGSPQHILQDFETL-LQYHVATYMDNDIAGQPPALQK-- 246
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 247 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 301
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V NI+ L +LV N + SDG+ G L G V
Sbjct: 302 ILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWKV 361
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 362 ERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 421
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
Q+ +AEV+ L V ++S + + D L + K+ + F+ K + ++
Sbjct: 422 QTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNILLW 481
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCG--------------DRYLIK 498
+P+PA+ K R RWT QI+ ++P +S D LI+
Sbjct: 482 VPDWDGVIPQPAILKPR--PRWTGKQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGCLIQ 539
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+ +++ G + + + N IV +F E+GP+ + FF+ Q ++ L +GFS+ + D
Sbjct: 540 EGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIGIGD 599
Query: 559 FSLSKAALWNIQKEI---QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS-S 614
+K + I+K I +A + L + +T NEL L N + V+K + ++ +
Sbjct: 600 TIPNKETIEQIEKAIAKQKAEVTELVEK-ATSNELESLPGMNVRETFESQVSKALNEARN 658
Query: 615 TLGY-----LID---------SKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVE 655
T G L+D S S + + Q + +G Q S GK F +TL
Sbjct: 659 TAGTKTEDGLLDINNAVQMARSGSKGSTINISQMSALVG-QQSVEGKRIPFGFKYRTL-- 715
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 716 ---PHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 767
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 768 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 800
>gi|259487939|tpe|CBF87003.1| TPA: hypothetical protein similar to RNA polymerase III (Broad)
[Aspergillus nidulans FGSC A4]
Length = 1445
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 184/707 (26%), Positives = 305/707 (43%), Gaps = 98/707 (13%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
+R+ S CE +L P+E R ++ ++ +++P PP C+ P + S+
Sbjct: 245 KRISDSDCE---LLGLDPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDASST 290
Query: 168 SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDV 226
DL+ + V + + + G P E + LQ+AV +V G K+
Sbjct: 291 EDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGK 350
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
R V + K + R K FS R+VI+ D RV+E+ VP +A+ +T
Sbjct: 351 PIRGFVQR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMT 405
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQ 334
+ E VN +N LQ+ V N ++Y +++G+ T L+ G
Sbjct: 406 YPEVVNRYNKEKLQQCVRNG---QKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGD 462
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R I DGD V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L
Sbjct: 463 IVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLH 522
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQL 452
PQ+ A+AE +EL V+ L + NG + D + + ++ K +F ++FT Q+
Sbjct: 523 VPQTEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFT-QI 581
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SC------- 491
++ L P LP PA+ K + WT Q+ ++ P D +C
Sbjct: 582 CLYMLGPQTRFDLPPPAVFKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPK 639
Query: 492 ---------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQ 540
D +L ++ SEV+ G D+ T+ S + V I GP E + L
Sbjct: 640 GNQPRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLS 699
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------- 586
L GFS+ + D S + + ++A Y+ + ++ T
Sbjct: 700 KLSARWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDE 759
Query: 587 ----QNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
+N+L + + + +A+ +S L + S S + V Q +G Q+
Sbjct: 760 LQTMENQLSGILSKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQI 818
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
G+ + HF P + P +K G ++ FF GL PYE + H++S RE
Sbjct: 819 IG-GQRVQDGFQDRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPYEFIFHAMSGREG 872
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+V ++ +E G + + LM L D+ YD TVRN S I+QF Y
Sbjct: 873 LVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRN-SSQGIVQFQYG 918
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 179/707 (25%), Positives = 308/707 (43%), Gaps = 72/707 (10%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + + ++ + +V +LKRI +E + L Y D IL+ LP+PP +
Sbjct: 120 QEQLMPEPIERKQQLTAEKVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPIPPPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D S DL+ + + + R R+G P E + LQ + Y
Sbjct: 180 PSVMMDTTSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIITEF-AQLLQFHIATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + + KA ++R + K FS+R+VIT D
Sbjct: 239 DLPGQPRATQRSGRPIKSIC-------NRLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++++GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 292 NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
L G V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 352 YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMF 439
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL KV
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTK 471
Query: 440 KKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------- 485
+ F++K + M+ +P P + K R WT Q+ ++P
Sbjct: 472 RDTFIEKDVFMNILMWWEDFDGKIPSPTILKPR--PLWTGKQVFNLIIPRQINLIRYSAW 529
Query: 486 -----PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GF + GD + I+K EVL G + T+ + ++ I+ E GP+ +F
Sbjct: 530 HSESETGFITPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ---- 594
Q L+ L GFS+ + D A + I + I + + + + Q + ++ +
Sbjct: 590 QWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKQLIKAAQEKALEAEPGRT 649
Query: 595 ----IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
EN + V + + +S+ L ++ + S + + Q +G Q
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQ 708
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ GK HF + D N P ++ G ++ + GL P E H++ RE
Sbjct: 709 NVEGKRIPYGFDGRTLPHFTK----DDNGPESR-GFVENSYLRGLTPQEFFFHAMGGREG 763
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 764 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
Length = 867
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 282/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTXKLADVIKANXNVQRLEMDGSPQHVINEFEAL-LQFHVATYMDNDIAGQPQAXQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
+ P + +A L+ ++R + K FS+R+V +GD ++++GVP IA+
Sbjct: 131 -----TGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVXSGDPNLDLDQVGVPISIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L ELV N D LR + G L G V
Sbjct: 186 TLTYPEIVTPYNIHRLTELVRNGPNEHPGAKYVIRDNGDRIDLRXNKRAGDIALXYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ E+ +V Q++S + + + D L ++ M + F+D + Q + M
Sbjct: 306 QSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFID--YEQVMNML 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FD------SCGDR-YLIK 498
P +P PA+ K + WT QIL +P G FD S D LI
Sbjct: 364 YWIPNWDGRIPSPAIIKPK--PLWTGKQILSMAIPKGIHLQRFDDGMNLLSAKDNGMLII 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G D+ T+ + ++ ++ EKGP+ + F+S+Q ++ L +GFS+ + D
Sbjct: 422 DGEIIFGVVDKKTVGATGGGLIHTVMREKGPKACAQLFNSIQKVVNYWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRHV 602
+ + ++ IQ A + + Q +D + + N R
Sbjct: 482 TIADASTMKDVTNTIQEAKKKVQEIILDAQQNRLDPEPGMTLRESFEHNVSRVLNQARDT 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ S S + + Q + +G Q+ + GK + HF
Sbjct: 542 AGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFSDRSLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ NY G ++ + GL P E H+++ RE ++ ++ +E G + + ++
Sbjct: 601 TKD-----NYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRII 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + +IQF Y
Sbjct: 656 KALEDIMVHYDGTTRNSLGD-VIQFLYG 682
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 183/703 (26%), Positives = 305/703 (43%), Gaps = 89/703 (12%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVS 165
A R+LS +LKRI +E + L F + D ILE LP+PP + + D S
Sbjct: 216 ADRVLS-------VLKRISDEDCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATS 268
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R ++G P E + LQ + Y + R T
Sbjct: 269 RSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEF-TQLLQFHIATYFDNELPGQPRAT 327
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 328 QKSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 380
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI LQELVD + Y +R+ +
Sbjct: 381 SIALNLTYPETVTPYNIERLQELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQH 440
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 441 LELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 500
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + D LL + + K+ F++K
Sbjct: 501 EMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV 560
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFD 489
M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 561 FMNTLMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHADTETGFI 618
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + +V I+ E GP+ +F Q L+ L
Sbjct: 619 TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLL 678
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-QNELVDLQ--------IENHI 599
+GF++ + D + + I + I + + + Q + +D + EN +
Sbjct: 679 QNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKKLDPEPGRTMTETFENRV 738
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
V K + +++ L ++ + S + + Q +G Q + GK
Sbjct: 739 NQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPF 797
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + +Y G ++ + GL P E H++ RE ++ +
Sbjct: 798 GFDGRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 847
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 848 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 889
Score = 41.2 bits (95), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P +G + G KCE+C + +C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTIDRKVKCETC-MANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P+YH
Sbjct: 77 PGHFGHLELAKPMYH 91
>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
heterogama]
Length = 639
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 171/643 (26%), Positives = 283/643 (44%), Gaps = 80/643 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
DG S DL+ + + + R G P E E+ LQ Y+ E+ G
Sbjct: 18 DGTSRGEDDLTHKLADILKANQNVKRYETEGHPAHVVNEFEAL-LQFHCATYMDNEMAGQ 76
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ +R + K FS+R+VITGD V+++
Sbjct: 77 PQALQK-------SGRPLKSIRARLKGKEGXLRGNLMGKRVDFSARTVITGDPNISVDQV 129
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLRE--GSKGH 327
GVP IAQ +TF E V NI+ LQ LV+N + D L+ G G
Sbjct: 130 GVPKSIAQNLTFPELVTPFNIDLLQGLVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGG 189
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R + DGD + NR P+ HK S+ V V T ++N + P +ADFD
Sbjct: 190 VRLQLGWKVERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFD 249
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
GD +++ PQS+ KAE+ E+ V KQ++S + + + D L +++ K+ FL K
Sbjct: 250 GDEMNMHVPQSVETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTK 309
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRY-------- 495
+ M+ L LP P + K WT QIL ++P G +S R+
Sbjct: 310 DLVMNILMWVLDWDGRLPIPCILKP--IPLWTGKQILSMIIPKGINSDNLRHSGHPENEH 367
Query: 496 ----------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + T+ + +V I E G E+ +F + Q ++ +
Sbjct: 368 SDISPGDTKVLIEDGELLCGIVCKKTVGATHQGLVHVIMNELGAEKAKDFLNGCQAVVNQ 427
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMS---------TQNELVD 592
L +GFS+ + D + NI I Q + ++ T E +
Sbjct: 428 WLLQNGFSIGIGDTIADDETMKNITNTISNAKQRVAEIIAEAQQDKLECAPGMTIRETFE 487
Query: 593 LQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
++ + + K +S + + ++ + S + + Q +G Q + GK
Sbjct: 488 HRVNKELNTARDAAGKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVG-QQNVEGKR 546
Query: 648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + D + P ++ G ++ C+ GL P E H++ RE +
Sbjct: 547 IPFGFKFRTL-----PHFTK----DDHSPESR-GFVENCYLRGLTPQEFFFHAMGGREGL 596
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
+ ++ +E G + + L+ L DV++ YDGTVRN + I+QF
Sbjct: 597 IDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQF 638
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 167/629 (26%), Positives = 275/629 (43%), Gaps = 70/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 273 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 331
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 332 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 384
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + +DG+ L G V
Sbjct: 385 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKV 444
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 445 ERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 504
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
Q+ +AEV EL V ++S + + D+L + K+ + F+DK + ++
Sbjct: 505 QTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLW 564
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDS----CGDRYLIKKSE 501
+ +P+PA+ K R RWT Q++ V+P P DS LI+ E
Sbjct: 565 VPNWDGVIPQPAILKPR--PRWTGKQLISMVIPQEISLHAPEGDSDIPPKDTGLLIQSGE 622
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+L G + + + I+ + E GPE + F + +Q ++ L G S+ + D
Sbjct: 623 LLYGLLKKKNVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGDTIP 682
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKM 604
K + IQ I Q +T NEL V EN +
Sbjct: 683 DKQTIEKIQVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGT 742
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
K + S+ + +S S + + Q +G Q+ + + F +TL H
Sbjct: 743 TTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PH 797
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 798 FTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 852
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+ YDGTVRN + I+QF Y
Sbjct: 853 VKALEDLSARYDGTVRNSLGD-IVQFLYG 880
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDESRTKPRDGGLNDPLLGSIDRGFKCKTC-TQS 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1404
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 193/720 (26%), Positives = 312/720 (43%), Gaps = 87/720 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V ++ KRI E + L + F + + +I +Y+ VPP + DG S DL++
Sbjct: 218 KVLDLFKRISNEDCELLGLRPEFGRPEQFIWQYISVPPVAIRPSVAQDGASN-EDDLTVK 276
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
+ + V I + G P + E + LQL+V Y+ E+ G R G
Sbjct: 277 LTEIVFSNALIKQGLLKGAPTAQFME-QWEFLQLSVAMYINSELPGVPSQMGQKPIR-GF 334
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q K + R K FS R+VI+ D R++E+ VP +A+ +T+ ERV
Sbjct: 335 CQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVT 390
Query: 293 VHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMD 342
HNI+ L++ V N S+G Y L+ G++ LR G +V R ++D
Sbjct: 391 AHNIDRLKKAVRNGCDVHPGANYVTAGSNGFKKY-LKFGNRTAIADGLRVGDIVERHVID 449
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD NR P+ HK S+ + V + ++N +CGP +ADFDGD ++L PQ+ A+
Sbjct: 450 GDIALFNRQPSLHKLSIMCHRIKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEAR 509
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSPL 460
E LEL SV+ L++ NG + D + + ++ ++ +F + FTQ + F + L
Sbjct: 510 TEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQICSYFGDADL 569
Query: 461 ----PRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------- 491
P P + R WT QI ++ P S C
Sbjct: 570 QIDIPPPTI--WRPVRLWTGKQIFNVLMRPNRKSRVFVNVESKCNKEEKADTKCYPWIGK 627
Query: 492 -------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPL 542
D +L I SE++ G D+ T+ S + V + + GP E + + L
Sbjct: 628 PAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKL 687
Query: 543 LMENLFADGFSVSLEDF-----------SLSKAALWNIQKE-IQALYSLLYHRMST-QNE 589
L GFS+ + D S+ +AA +K I+A LL ++ Q +
Sbjct: 688 CARYLANFGFSLGINDVIPGPVLSDKKDSMVEAAYAACEKLIIRAKKGLLENKPGCDQEQ 747
Query: 590 LVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLSDR 645
++ +I + V+ V + +K S LI + S +V V Q +G Q+
Sbjct: 748 TLEAEISKVLSDVRGNVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQII-A 806
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G + HF P P +K G ++ F+ GL P E + H+IS RE +V
Sbjct: 807 GHRVPDGFQDRSLPHF----PKKSRDPPSK-GFVRNSFYTGLTPTEFLFHAISGREGLVD 861
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
++ +E G + + LM L D+V YD +VRN ++QF Y + L +PV
Sbjct: 862 TAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVG-GVVQFRYGDDGLDPACLEGDAQPV 920
>gi|154151472|ref|YP_001405090.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
gi|154000024|gb|ABS56447.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
Length = 879
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 190/762 (24%), Positives = 321/762 (42%), Gaps = 99/762 (12%)
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
H G +L I P+ SE+ + DG + +++ L++IP+E
Sbjct: 140 HCGEQQLKINFEKPTTFSEVMI----------EDGKKVEHKLTPADIRARLEKIPDE--- 186
Query: 131 KLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEII 186
L G P+ + IL LPVPP + I + DL+ ++ +
Sbjct: 187 DLIPLGINPRVARPEWTILTVLPVPPVTMRPSIILENGQRSEDDLTHKLVDIIRINQRFK 246
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
+ +G P +++ LQ V YL EV G + S P T L
Sbjct: 247 ENQDAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR-------SGRPLKTLSQRL 298
Query: 245 E----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
+ + R K FSSR+VI+ D V E+GVP +A +T RV +N+ L+
Sbjct: 299 KGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVTEVGVPRAVANEMTIPVRVTPYNLEELK 358
Query: 301 ELVDNKLCLTYSDG--SSSYSLREGSKG-----------HTFLRPGQVVHRRIMDGDTVF 347
++V N + + ++Y +R ++ + G V R++ DGD V
Sbjct: 359 QIVRNGPIRSSVNAPCGANYVIRPDNRRLRLGADNLDTVADMIETGWTVERQLRDGDIVL 418
Query: 348 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
NR P+ H+ S+ A + V + T ++NP +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 419 FNRQPSLHRMSIMAHRIKVMEGRTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEASI 478
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSP-----LPR 462
L SV++ +LS G + D + + ++ + FT++ A++ L P +P
Sbjct: 479 LCSVQENILSPRFGGPIIGGIHDHISGIFMLTHDM---RWFTKEEALYLLKPVRVDHMPP 535
Query: 463 PALSKARCSARWTALQILQSVLPPGF------------DSCG------DRYL-IKKSEVL 503
P ++ W+ Q+ +LP D+C D Y+ I +
Sbjct: 536 PGKTENGIEY-WSNKQVFSQILPTALNMVFHASSCQNCDTCKKELCERDAYVRIMGGRLE 594
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G D+ I + +IV I + G + EF D + L + + DGFS ++D LSK
Sbjct: 595 SGTIDKKAIGAFDGQIVNRIIRQYGMKRATEFIDQVTKLSIRGIMIDGFSFGIDDEDLSK 654
Query: 564 AALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVKMLVAKFI 610
I + + R+ T E +++QI + + +
Sbjct: 655 TEYGQIDDVLNTAALDVSRRIKIYEDGQLEPMPGRTVEETLEMQIMQVLGKARDQTGQIA 714
Query: 611 LKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ LG + S + ++ + Q AG +G Q S RG+ + + HF+R
Sbjct: 715 GRHLGLGNSAVVMAVSGARGSMLNLTQMAGCIG-QQSVRGERIVRGYDDRTLPHFKR--- 770
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +G I + GL+P E H+I RE +V ++ S+ G L + ++ L+D
Sbjct: 771 --GDRGADAHGFIAHSYKGGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQD 828
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVNARK-SHSLFPAGEPVGV 767
+ + YDGTVR IIQF Y ++ + S F G+PV V
Sbjct: 829 LKVAYDGTVRTT-GGRIIQFQYGEDSTDPTKSAF--GDPVDV 867
>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1397
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 202/749 (26%), Positives = 327/749 (43%), Gaps = 92/749 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
+ P+ ++ +L MY N V + L + +V ++ +RI +E + L G P
Sbjct: 192 FAPALEAQKELAMYI------NKAVHEDL--NALKVLDLFRRISDEDCELL---GLHPDW 240
Query: 142 G----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
G +I +YL VPP C+ DG S DL++ + + V I + G+P +
Sbjct: 241 GRPEQFIWQYLSVPPVCIRPSVAQDGASN-EDDLTVKLTEIVFTNALIRQGLAKGSPTPQ 299
Query: 198 SQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKG 255
E + LQL+V Y+ E+ G R V + K + R K
Sbjct: 300 FME-QWEFLQLSVAMYINSELPGVPSQPGQKPIRGFVQR-----LKGKQGRFRGNLSGKR 353
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT----- 310
FS R+VI+ D R++E+ VP +A+ +T+ ERV HNIN L++ + N +
Sbjct: 354 VDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANF 413
Query: 311 YSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
+ G + LR G++ L G VV R I+DGD + NR P+ HK S+ +
Sbjct: 414 VARGDNKKFLRFGNRAAIADGLGIGDVVERHIIDGDIILFNRQPSLHKLSIMCHRAKIRP 473
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N +CGP +ADFDGD ++L PQ+ A+ E LEL +V+ L++ NG +
Sbjct: 474 WRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNLVTPRNGEPVIAAI 533
Query: 429 TDALLSLKVMFKK-YFLD-KAFTQQLAMFALSPL----PRPALSKARCSARWTALQILQS 482
D + + ++ +K FLD + FTQ FA + + P P + K WT QI
Sbjct: 534 QDFITASFLLSRKDQFLDRRQFTQICCYFADADMQIDIPPPTIWKP--VRLWTGKQIFNV 591
Query: 483 VLPPGFDS---------C------------------GDRYL-IKKSEVLKGDFDRDTIPS 514
++ P S C D +L I SE++ G D+ T+ S
Sbjct: 592 LIRPNKKSNILVNVESKCHKWEEAKPENYPSPDLSPNDGWLVIVNSEIMCGVMDKATVGS 651
Query: 515 VINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF----SLSKAALWNI 569
+ I I + GP E + L L L GFS+ + D LS+ +
Sbjct: 652 GKKKSIFGVIMRDYGPHEAAAAMNRLAKLCARWLANYGFSLGINDVIPGPELSRQKDILV 711
Query: 570 QK---EIQALYSL-----LYHRMST-QNELVDLQIENHIRHVKMLVAKFILK--SSTLGY 618
+K + Q L +L L ++ Q + ++ I + + V+ V + +K S
Sbjct: 712 EKAYADCQDLIALAKKGKLENKPGCDQEQTLEALISSVLSKVREAVGQICMKELSRQNAP 771
Query: 619 LIDSK--SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY 676
LI + S +V V Q +G Q+ G + HF P P +K
Sbjct: 772 LIMATCGSKGSVINVSQMVACVGQQII-AGHRVPNGFQDRSLPHF----PKKSKEPPSK- 825
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ F+ GL E + H+IS RE +V ++ +E G + + LM L D+ YD +VR
Sbjct: 826 GFVRNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVR 885
Query: 737 NVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
N + ++QF Y + L +P+
Sbjct: 886 N-STGGVVQFRYGDDGLDPACLEGDAQPI 913
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus impatiens]
Length = 1385
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 190/710 (26%), Positives = 308/710 (43%), Gaps = 78/710 (10%)
Query: 104 DGVAQRLLSSCC---EVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVP 158
+GV Q L S EV+ +L++IPE L + P+D IL +PVPP C+
Sbjct: 207 EGVLQTGLISVLNPLEVQSILEKIPESDIPLLLMNSEYALPKD-LILTRIPVPPICIRPS 265
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EV 216
+SD + + D L +++ ++I+ R + + LQL Y+ E+
Sbjct: 266 VVSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEM 325
Query: 217 RGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG 276
G + + + G+ Q K + R K FSSR+VI+ D R+ ++G
Sbjct: 326 SGIPLNMQPKKSGRGLVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVG 381
Query: 277 VPFEIAQRITFEERVNVHNINYLQELVDNKLCLT-----YSDGSSSYS--LREGSKGHTF 329
VP +A+ +T+ ERVN NI +++LV N + G + + L+ G++
Sbjct: 382 VPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPGANFIQQGKTQFKKFLKYGNRQKIA 441
Query: 330 --LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G +V R + D D V NR P+ HK S+ A V D T + N +C P +ADFD
Sbjct: 442 QDLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKVLDHRTFRFNECVCTPYNADFD 501
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
GD ++L PQ+ A+AE L L + L++ NG L + D + ++ +K FL+K
Sbjct: 502 GDEMNLHLPQTEEARAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNK 561
Query: 447 AFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDS 490
A QLA L+ LP PA+ K S WT QI +L P +
Sbjct: 562 AQASQLAGCLLAGPDIAMSITLPEPAILKP--SMLWTGKQIFSLILKPNSTCNIKANLKT 619
Query: 491 CGDRY-------------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF-F 536
G Y +I+ SE+L G D+ T+ S + + I E++
Sbjct: 620 KGRAYTSNQELCINDSYVIIRNSELLAGTMDKSTLGSGSKQNIFYILLRDWGEDIATIAM 679
Query: 537 DSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHR 583
L + L GFS+ + D + + L +K + A YS L+
Sbjct: 680 WRLARMASFFLMNRGFSIGIGDVTPGQGLLKAKEKLLNAGYSKCTEYIRQMEEGRLVCQP 739
Query: 584 MSTQNELVDLQIENHIRHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLG 639
++ E ++ I + ++ K LK S++ + S S + + Q +G
Sbjct: 740 GCSEEETLEAMILKELSVIRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVG 799
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q + G + HFER P AK G ++ F+ GL P E H++
Sbjct: 800 -QQAISGHRVPNGFEDRALPHFER----HSKIPAAK-GFVENSFYSGLTPTEFFFHTMGG 853
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE +V ++ +E G + + L+ L D+ + YD TVRN + I+Q Y
Sbjct: 854 REGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYG 902
>gi|116753354|ref|YP_842472.1| DNA-directed RNA polymerase subunit A' [Methanosaeta thermophila
PT]
gi|116664805|gb|ABK13832.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
PT]
Length = 876
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 215/859 (25%), Positives = 350/859 (40%), Gaps = 140/859 (16%)
Query: 13 QIVGIRFGLATQKE---------ICTASISDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I IRFGL + +E I + D L +P LG+ +C +CG
Sbjct: 6 RIGKIRFGLISPQEFRKMSVVKVITADTYDDDGFPIEMGLMDPRLGVIDPGLRCRTCG-G 64
Query: 64 EPGKCEGHFGYIELPIPIYHPSH-------------------ISELKLTMYAFQLQIKND 104
PG+C GHFG+I+L P+ H +SEL+ + Q++ D
Sbjct: 65 RPGECPGHFGHIDLVAPVIHVGFAKLIRKILRAICRECSKLMLSELEKKEFLRQIRTLED 124
Query: 105 -------------------------GVAQRLLS--------------SCCEVKEMLKRIP 125
G QR + + ++++ +RI
Sbjct: 125 LGQPTEDVVNKVFAEARKHKTCPYCGAPQREIKFERPLSYIEDGHKLTPSDIRDRFERIS 184
Query: 126 EETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK 181
+E + G P+ IL LPVPP + P I+ S D L +++
Sbjct: 185 DE---DIMVMGMNPETARPEWTILTVLPVPPVTMR-PSITLESGQRSEDDLTHKLVDIIR 240
Query: 182 QVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT 240
+ + +R +G P +++ LQ V +L+ T R G P T
Sbjct: 241 INQRFQENREAGAPQLIIEDLWEL-LQYHVTTFLD--NTVSGVPPARHRSG---RPLKTL 294
Query: 241 KAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
L+ F SG FS+R+VI+ +NE+GVP E+A+ +T V NI
Sbjct: 295 SQRLKGKEGRFRGSLSGKRVNFSARTVISPYPNLSINEVGVPIEVAKELTVPIMVTPKNI 354
Query: 297 NYLQELV----DNKLCLTY---SDGSS-SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFI 348
+++ V DN + Y +DG + R + L G V R++ DGD V
Sbjct: 355 EVVRKYVMRGPDNHPGVNYVTRADGRRVKVTERNCQEVAEQLEVGWKVDRQLADGDIVLF 414
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ H+ S+ A V V T ++NP +C P +ADFDGD ++L PQ+ A+AE L
Sbjct: 415 NRQPSLHRMSIMAHRVKVMPYKTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEAEIL 474
Query: 409 FSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDK-AFTQQLAMFALSPLPRPALS 466
V++ +LS G + D + S + K+ L+K + L +S +P PA
Sbjct: 475 MRVQENILSPRFGGPIIGGIHDYVTGSFLLTHKERRLNKDRLMEVLKKLDISDIPVPAGY 534
Query: 467 KARCSARWTALQILQSVLP------------------PGFDSCGDRYLIKKSEV-LKGDF 507
WT QI +LP G D D Y++ ++ V LKG
Sbjct: 535 DENGDPYWTGKQIFSLILPKDLNLTFKADFCSNCPVCKGEDCENDAYVVIRNGVLLKGTI 594
Query: 508 DRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------- 558
D + + + +++ I E P +F D + L + + GFS + D
Sbjct: 595 DAEAVGAFKGKVIDRIIKEYDPGVASQFLDRMTLLALRGIMLAGFSFGISDEDVPREAAE 654
Query: 559 --FSLSKAALWNIQKEIQA-----LYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL 611
++++A ++Q+ I+A L L + E+ +Q R +A L
Sbjct: 655 QIQDVTRSAKESVQRLIEAYRAGELEPLPGRTLEETLEMRIMQTLGKARDAAGQIAGRYL 714
Query: 612 KSSTLGYLID-SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLN 670
G ++ S + ++ + Q A +G Q S RG+ + + HF+R DL
Sbjct: 715 GLDNSGVVMAVSGARGSMLNLTQMAACVG-QQSVRGERIKRGYTDRTLPHFKR---GDLG 770
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
+G ++ + GL P E H+I RE +V ++ S+ G L + L+ L+D+ +
Sbjct: 771 --AEAHGFVESSYKKGLSPTEFFFHAIGGREGLVDTAIRTSQSGYLQRRLVNALQDLEVN 828
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVR I+QF Y
Sbjct: 829 YDGTVRET-RGMIVQFKYG 846
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 178/690 (25%), Positives = 300/690 (43%), Gaps = 77/690 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIA 174
+V ++LKRI +E + + F + +++ + P P I DG S DL+
Sbjct: 141 QVHQILKRITDEDLEDMGLSAEFARPDWMIITVLPVPPPPVRPSIQMDGSSRGEDDLTHK 200
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGV 232
+ + V + R G P E E LQ V Y++ + G ++ +
Sbjct: 201 LADILKANVNVKRCETEGAPVHVIDEFEQL-LQFHVATYMDNDIAGQPQALQK------- 252
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +TF
Sbjct: 253 SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFP 312
Query: 289 ERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIM 341
E V +NI +QELV N D LR + G L+ G V R +
Sbjct: 313 EMVTPYNIERMQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLN 372
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
+GD V NR P+ HK S+ V V T ++N + P +ADFDGD +++ PQS
Sbjct: 373 NGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEET 432
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL--- 457
KAE+ E+ V KQ++S + + + D L ++ K+ F+DKA + M+
Sbjct: 433 KAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNILMWVADWD 492
Query: 458 SPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RYLIKKS 500
+P PA+ K + WT Q++ ++P + S GD + +++
Sbjct: 493 GVIPTPAILKPQ--PLWTGKQLVTMIVPKNINCITYHSAHPDDEKSDISPGDTKVVVENG 550
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E+L G + T+ + V E GPE +FF Q ++ L GFS+ + D
Sbjct: 551 ELLSGIVCKKTVGASNGGWVHVAMNEHGPEVAKKFFSGAQAVVNYWLLQHGFSIGIGDTI 610
Query: 561 LSKAALWNIQKEIQALYSLLYHR-MSTQNELVDL--------QIENHIR--------HVK 603
+I + I + + +S Q + ++ EN + H
Sbjct: 611 ADGQTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSG 670
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
K + + + + ++ S S + + Q + +G Q + + F +TL
Sbjct: 671 RSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTL-----P 725
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 726 HFTKD-----DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRR 780
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++ YDGTVRN N IIQF Y
Sbjct: 781 LVKALEDVMVKYDGTVRNSLGN-IIQFCYG 809
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 163/631 (25%), Positives = 281/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 260 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 316
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 317 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 371
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS----------KGHTFLRPG 333
+T+ E V +NI+ L +LV N + Y +RE G L+ G
Sbjct: 372 TLTYPEVVTPYNIDRLTQLVRNG---PNEHPGAKYVIRENGDRIDLRYSKRAGDVQLQYG 428
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 429 WKVERHIMDDDPVLFNRQPSLHKMSMMAHKVKVIPYSTFRLNLSVTSPYNADFDGDEMNL 488
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L ++++ + FL+ L
Sbjct: 489 HVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLE--LDHVL 546
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + WT QIL +P G FD +
Sbjct: 547 NMLYWVPDWDGVIPTPAILKPK--PLWTGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGM 604
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G D+ T+ S ++ + EKGP+ F ++Q ++ L +GFS
Sbjct: 605 LIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQTCARLFGNIQKVVNFWLLHNGFSTG 664
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
+ D + +K + + KE QA H M+ + D ++ N
Sbjct: 665 IGDTIADGATIKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 724
Query: 600 RHVKMLVAKFILKSST-LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ L + + ++ + S + + Q + +G Q S GK V+
Sbjct: 725 RDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGFGFVDRTL 783
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 784 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 838
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YD T RN N +IQF Y
Sbjct: 839 RLVKALEDIMVHYDNTTRNSLGN-VIQFIYG 868
Score = 42.4 bits (98), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +E+ S++ + L +P LG KC++C G SE
Sbjct: 17 VQFGLFSPEEVRAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMSE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+I+L P++H I+++K
Sbjct: 77 ---CPGHFGHIDLAKPVFHVGFITKIK 100
>gi|443906356|dbj|BAM76816.1| RNA polymerase II largest subunit, partial [Metacordyceps
brittlebankisoides]
Length = 845
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 172/641 (26%), Positives = 279/641 (43%), Gaps = 75/641 (11%)
Query: 162 DGVST---MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 88 DGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 146
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 147 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 199
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + +DG+
Sbjct: 200 HEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRA 259
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +MDGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 260 AQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 319
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AEV EL V ++S + + D+L + K+ + F+
Sbjct: 320 FDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 379
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDS---- 490
DK + ++ + +P+PA+ K R RWT Q++ V+P P DS
Sbjct: 380 DKEMVMNMMLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPQEISLHAPEGDSDIPL 437
Query: 491 CGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E+L G + + + I+ + E GPE + F + +Q ++ L
Sbjct: 438 KDTGLLIQSGELLYGLLKKKNVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 497
Query: 551 GFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR- 600
G S+ + D K + IQ I Q +T NEL V EN +
Sbjct: 498 GHSIGIGDTVPDKQTIEKIQVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSM 557
Query: 601 -------HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----F 648
K + S+ + +S S + + Q +G Q+ + GK F
Sbjct: 558 ALNSARDQAGTTTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVE-GKRIPFGF 616
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+TL HF + D P A+ G ++ + GL P E H+++ RE ++ ++
Sbjct: 617 KYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAV 666
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+ YDGTVRN + I+QF Y
Sbjct: 667 KTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IVQFLYG 706
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 194/745 (26%), Positives = 318/745 (42%), Gaps = 98/745 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDG-----YILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
++ KRIP E + L F +D IL LP+PP + P + G + S D
Sbjct: 140 QIFKRIPAEDLELLG----FDKDNARPEWMILTCLPIPPPQVR-PSVHHGSADRSEDDLT 194
Query: 174 AMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG----TAKSSRDV 226
L ++K I ++ +SGTP + +E+ LQ Y+ E G T KS R +
Sbjct: 195 HKLADIIKANAAIQKNEKSGTPLHQMEEM-VRMLQYHCATYVNNEYPGVPTATTKSGRPL 253
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ + Q K ++R + K FS+R+VIT D ++++GVP +A +T
Sbjct: 254 KS---IRQ----RLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMT 306
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG------------SKGHTFLRPGQ 334
E V N L ELV N LTY + Y +RE + L G
Sbjct: 307 VPEIVTPFNFERLNELVTNG-PLTYP--GAKYVIREDGTRIDLRFASGKANDQIQLEYGY 363
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
V R + DGD + NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 364 KVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLH 423
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLA 453
PQSL KAE+LEL V + +++ + + L D LL+ K+ + F+ K
Sbjct: 424 VPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCL 483
Query: 454 MFAL---SPLPRPALSKARCSARWTALQILQSVLP------------------------- 485
M + LP PA+ K + WT Q+ +LP
Sbjct: 484 MHLIDFDGKLPVPAILKPK--PLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDI 541
Query: 486 PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
P FD+ + LI + E++ G D+ ++ S ++ I EKG E +F Q ++
Sbjct: 542 PEFDT---KVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINH 598
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYS--LLYHRMSTQNEL-------VDLQIE 596
L GFS+ + D KA + I++ I+ L + + + +L + E
Sbjct: 599 WLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQSFE 658
Query: 597 NHIRHVKMLV-------AKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
N + V AK LK + + ++ + S + + Q +G Q + GK
Sbjct: 659 NQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVG-QQNVEGKR 717
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
HF + D + P ++ G + + GL P E H++ RE ++ ++
Sbjct: 718 IPYGFRNRTLPHFAQ----DDHGPESR-GFVANSYLRGLTPQEFFFHTMGGREGLIDTAV 772
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
SE G + + L+ + D+++ YDGTVR+ N ++QF Y + +H + + L
Sbjct: 773 KTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGEDGMDAHKVESQSIDIMNL 831
Query: 769 AATAMSNPAYKAVLDSSPSSNNSWE 793
+ + + L SSPS N E
Sbjct: 832 SDAKFQDKYWYNSLGSSPSFTNPTE 856
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 177/753 (23%), Positives = 329/753 (43%), Gaps = 91/753 (12%)
Query: 108 QRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+R L + E+ + K I PE++ K Y + ++ LPVPP + + +
Sbjct: 9 ERRLLTPGEILNVFKHISPEDSYKLGFNDDYARPEWMLITVLPVPPPHVRPSVQVNDTAR 68
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
DL+ + V + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 69 SEDDLTFKLADIVKYNMSVQKLEMDGSPQHVIAEYEAL-LQFHVATYMDNDIAGQPQALQ 127
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 128 K-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRS 180
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N + D L+ + G L+ G
Sbjct: 181 IARTLTYPEMVTPYNIHKLTELVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYG 240
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
+V R +MD D V NR P+ HK S+ A V V T ++N P +ADFDGD ++L
Sbjct: 241 WIVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSATSPYNADFDGDEMNL 300
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + + +
Sbjct: 301 HVPQSEETRAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIE--YDEVM 358
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGF--------------DSCGD 493
+ P +P P + K + WT Q+L V+P G D G
Sbjct: 359 NILYWIPDWDGRIPEPTIVKPK--PLWTGKQMLSMVIPKGINIERKDEKFTYLSKDDTG- 415
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
LI E++ G ++ T+ + ++ ++F EKGP+ F ++Q ++ L +GFS
Sbjct: 416 -MLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGNIQKVVNYWLLHNGFS 474
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIR 600
+ + D + +I I A + ++ T E + + +
Sbjct: 475 IGIGDTIADAPTVRSITDTINAAKDKVQEIITKAQNNQLPPEPGMTLRESFEQNVSQVLN 534
Query: 601 HVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
+ V K S + + ++ + S + + Q + +G Q+ + GK +
Sbjct: 535 QARDDVGKATADSLQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVE-GKRIPFGFSDR 593
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 594 SLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
+ L+ L D+++ YDGT RN N ++QF Y + L AT +
Sbjct: 649 QRRLVKALEDIMVHYDGTTRNSLGN-VLQFVYGEDG---------------LDATQVE-- 690
Query: 777 AYKAVLDSSPSSNNSWELMKEILLCRVSFNNDP 809
K +D+ P ++ ++E +I L + S + +P
Sbjct: 691 --KQAIDTIPGTHEAFEKRYKIDLMQESTSINP 721
>gi|147801680|emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 146/264 (55%), Gaps = 57/264 (21%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLS SVTMVAKGVLKEHLILLANSMTCAG+L+GFNSGGYKALSR+LN+QVPFTEATLF+
Sbjct: 357 QRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFL 416
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
TGSRFD+LW T+ QD G+D+Y F
Sbjct: 417 V--------------------------------TGSRFDVLWDTKEIGPAQDGGIDIYSF 444
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDG--LEDE-FDWSLSPEHNLCSDKPVFEDLVEDQSWLE 1156
LH+VRS + +E DT CLG EV+ LEDE + +SPEH+ +KPVFED E Q+ E
Sbjct: 445 LHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWE 504
Query: 1157 NKQENANWDSEADCRKSSE------DKWEKLGT---------SLEKP-----SSGWRTEG 1196
N ++ D + K + W GT S +P S+GW +G
Sbjct: 505 NHVPDSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPEESSRSAGWDDKG 564
Query: 1197 AWG--KSSDDKLEKAGSPSRKPSG 1218
WG K+ + + S + SG
Sbjct: 565 TWGTDKAQNTAFRRTHEDSPRSSG 588
>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
Length = 1003
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/537 (27%), Positives = 243/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKN 330
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 331 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 390
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 391 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 450
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 451 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKP--LAMW 508
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G ++ + + ++ +
Sbjct: 509 TGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVIHIV 568
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLY 581
F EKGPE + FF+ Q ++ L +GFS+ + D + + I++ + Q
Sbjct: 569 FNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIAQIEEAVILQKKEVAAI 628
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
+T NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 629 TLSATANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKG 688
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 689 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 748
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 749 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 804
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 177/698 (25%), Positives = 300/698 (42%), Gaps = 79/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------VLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 298 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 357
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 358 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 417
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 418 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 477
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P P + K R WT Q+ ++P GF
Sbjct: 478 FMNILMWWEDFDGKIPAPTILKPR--PLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFI 535
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 536 TPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 595
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI 599
+GFS+ + D + + I + I + + + E + EN +
Sbjct: 596 QNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRV 655
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 656 NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPY 714
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
++ HF + +Y G ++ + GL P E H++ RE ++ ++ S
Sbjct: 715 GFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 172/641 (26%), Positives = 284/641 (44%), Gaps = 51/641 (7%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRG 218
D DG + DL+ + + + R GTP +E E+ LQ V Y+
Sbjct: 185 DAGDGPAG-EDDLTYKLGDIIRANGNVRRGEVEGTPAHIIEEFETL-LQFHVATYM---- 238
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
A + S P ++ LE ++R + K FS+R+VITGD ++E
Sbjct: 239 -ANDTAGQPQALQKSGRPVKAIRSRLEGKEGRVRGNLMGKRVDFSARTVITGDPNISLDE 297
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GH 327
+GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 298 VGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPGARYVIRDTGERIDLRYHKRAGD 357
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADFD
Sbjct: 358 ISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFD 417
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD ++L PQS +AEV +L V ++S + + D L + K+ + FL++
Sbjct: 418 GDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQ 477
Query: 447 AFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
Q + + P +P+PA+ K S WT QI+ V+PPG + GD
Sbjct: 478 --DQVMNILLWVPDWDGIIPQPAILKP--SPMWTGKQIISLVIPPGLNLGRSGDDGFSPI 533
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI E++ G + + + I+ ++ EKGPE + FF+ Q ++ L +
Sbjct: 534 DDSGLLISNGELMYGLLSKKIVGASSAGIIHIVYNEKGPEAAMAFFNGAQTVVNYWLLHN 593
Query: 551 GFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
GFS+ + D + + +I+ + Q L + +T++ L L N + V+K
Sbjct: 594 GFSIGIGDTIPDRETIKHIEDAVNKQKAEVLEITKSATESVLDTLPGMNVRETFESRVSK 653
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE-- 662
+ K+ KS ++ +Q A G G + +S + VE F
Sbjct: 654 ALNKARDDAGTETEKSLKDLNNAIQMARSGSKGSTIDISQMTAVVGQQSVEGKRIPFGFK 713
Query: 663 -RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
R P +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 714 YRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 773
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP 760
L+ L DV+ YDGT+RN + I+QF Y + ++ P
Sbjct: 774 LVKALEDVMAKYDGTIRNSLGD-IVQFLYGEDGLDGATIEP 813
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 177/690 (25%), Positives = 298/690 (43%), Gaps = 77/690 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIA 174
+V ++LKRI +E + + F + +++ + P P I DG S DL+
Sbjct: 139 QVHQILKRITDEDLEDMGLSAEFARPDWMIITVLPVPPPPVRPSIQMDGSSRGEDDLTHK 198
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGV 232
+ + V + R G P E E LQ V Y++ + G ++ +
Sbjct: 199 LADILKANVNVKRCETEGAPVHVIDEFEQL-LQFHVATYMDNDIAGQPQALQK------- 250
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +TF
Sbjct: 251 SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFP 310
Query: 289 ERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIM 341
E V +NI +QELV N D LR + G L+ G V R +
Sbjct: 311 EMVTPYNIERMQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLN 370
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
DGD V NR P+ HK S+ V V T ++N + P +ADFDGD +++ PQS
Sbjct: 371 DGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEET 430
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL--- 457
AE+ E+ V KQ++S + + + D L ++ K+ F+DKA + M+
Sbjct: 431 NAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNILMWVADWD 490
Query: 458 SPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RYLIKKS 500
+P PA+ K + WT Q++ ++P + S GD + +++
Sbjct: 491 GVIPTPAILKPQ--PLWTGKQLVTMIVPKNINCITYHSAHPDDEKSDISPGDTKVVVENG 548
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G + T+ + V E GPE FF Q ++ L GFS+ + D
Sbjct: 549 ELISGIVCKKTVGASNGGWVHVAMNEHGPEVAKRFFSGAQAVVNYWLLQHGFSIGIGDTI 608
Query: 561 LSKAALWNIQKEIQALYSLLYHR-MSTQNELVDL--------QIENHIR--------HVK 603
+I + I + + +S Q + ++ EN + H
Sbjct: 609 ADGKTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSG 668
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
K + + + + ++ S S + + Q + +G Q + + F +TL
Sbjct: 669 RSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTL-----P 723
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 724 HFSKD-----DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRR 778
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++ YDGTVRN N IIQF Y
Sbjct: 779 LVKALEDVMVKYDGTVRNSLGN-IIQFCYG 807
>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
Length = 872
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 160/631 (25%), Positives = 280/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADILKANINVQRLEIDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLTYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YEQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY------- 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NMLYWIPNWDGVIPPPAVIKPK--PLWTGKQLLSMAIPKGIHLQRFDDGRDMLSPKDKGI 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 419 LIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSSIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHI 599
+ D K + ++ IQ + + + QN+L ++ N
Sbjct: 479 IGDTIADKDTMRDVTITIQEAKQKVQEIILDAQQNKLEPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 194/745 (26%), Positives = 318/745 (42%), Gaps = 98/745 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDG-----YILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
++ KRIP E + L F +D IL LP+PP + P + G + S D
Sbjct: 184 QIFKRIPAEDLELLG----FDKDNARPEWMILTCLPIPPPQVR-PSVHHGSADRSEDDLT 238
Query: 174 AMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG----TAKSSRDV 226
L ++K I ++ +SGTP + +E+ LQ Y+ E G T KS R +
Sbjct: 239 HKLADIIKANAAIQKNEKSGTPLHQMEEM-VRMLQYHCATYVNNEYPGVPTATTKSGRPL 297
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ + Q K ++R + K FS+R+VIT D ++++GVP +A +T
Sbjct: 298 KS---IRQ----RLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMT 350
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG------------SKGHTFLRPGQ 334
E V N L ELV N LTY + Y +RE + L G
Sbjct: 351 VPEIVTPFNFERLNELVTNG-PLTYP--GAKYVIREDGTRIDLRFASGKANDQIQLEYGY 407
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
V R + DGD + NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 408 KVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLH 467
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLA 453
PQSL KAE+LEL V + +++ + + L D LL+ K+ + F+ K
Sbjct: 468 VPQSLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCL 527
Query: 454 MFAL---SPLPRPALSKARCSARWTALQILQSVLP------------------------- 485
M + LP PA+ K + WT Q+ +LP
Sbjct: 528 MHLIDFDGKLPVPAILKPK--PLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDI 585
Query: 486 PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
P FD+ + LI + E++ G D+ ++ S ++ I EKG E +F Q ++
Sbjct: 586 PEFDT---KVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINH 642
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYS--LLYHRMSTQNEL-------VDLQIE 596
L GFS+ + D KA + I++ I+ L + + + +L + E
Sbjct: 643 WLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQSFE 702
Query: 597 NHIRHVKMLV-------AKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
N + V AK LK + + ++ + S + + Q +G Q + GK
Sbjct: 703 NQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVG-QQNVEGKR 761
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
HF + D + P ++ G + + GL P E H++ RE ++ ++
Sbjct: 762 IPYGFRNRTLPHFAQ----DDHGPESR-GFVANSYLRGLTPQEFFFHTMGGREGLIDTAV 816
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
SE G + + L+ + D+++ YDGTVR+ N ++QF Y + +H + + L
Sbjct: 817 KTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGEDGMDAHKVESQSIDIMNL 875
Query: 769 AATAMSNPAYKAVLDSSPSSNNSWE 793
+ + + L SSPS N E
Sbjct: 876 SDAKFQDKYWYNSLGSSPSFTNPTE 900
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 161/628 (25%), Positives = 277/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDVVLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE++ + +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 306 QSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIE--YDQMMNTL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGF------------DSCGDRYLIK 498
P +P+PA+ K + WT Q+L +P G + LI
Sbjct: 364 YWIPDWNGVIPQPAILKPK--PLWTGKQLLSVAIPDGIHLQRLDEGTTMASPKDNGMLIV 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E+L G D+ T+ + ++ ++ EKGP + F LQ ++ L +GFS+ + D
Sbjct: 422 DGEILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGKLQKVVNFWLLHNGFSIGIGD 481
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHIRHV 602
+++K + + E Q H M+ + D I N R
Sbjct: 482 TIADASTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDK 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ + S + + Q + +G Q S GK + + HF
Sbjct: 542 AGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 601 AKD-----DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N IIQF Y
Sbjct: 656 KALEDIMVHYDGTTRNSTGN-IIQFVYG 682
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 279/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 269 DLTFKLADVIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 327
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 328 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 377
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 378 IAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 437
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 438 WKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 497
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + +++ F Q +
Sbjct: 498 HVPQSPETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE--FDQVM 555
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 556 NMCYWIPNWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDGGRDLLSAKDTGM 613
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 614 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGFSIG 673
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHI 599
+ D + + +I IQ + + + + QN L ++ N
Sbjct: 674 IGDTIADASTMKDITTTIQEAKTKVQEIILDAQQNRLEPEPGMTLRESFEHNVSRVLNQA 733
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 734 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSL 792
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 793 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 847
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 848 RLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 877
Score = 43.9 bits (102), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +EI S++ L +P LG +C++CG +
Sbjct: 18 VQFGLLSPEEIRAISVAKIEYPETMDQTTKKPREGGLNDPRLGSIDRNFRCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+I+L P++H I+++K
Sbjct: 77 ECPGHFGHIDLAKPVFHIGFIAKIK 101
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 220/874 (25%), Positives = 354/874 (40%), Gaps = 148/874 (16%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES-CGTSE 64
SS I+ +I I+FG+ + EI S++ S G P++ G + G E
Sbjct: 2 SSKIVTNRISRIKFGILSPDEIRKMSVTQIFSSEVYDND----GSPIDGGVMDRRLGAIE 57
Query: 65 PGK-----------CEGHFGYIELPIPIYHPSHISELKLTMYA-------FQLQIKNDGV 106
PG+ C GHFG+IEL P+ H ++ + + A ++ + G
Sbjct: 58 PGETCPICGNTRDSCPGHFGHIELAKPVIHVGFAKQILIYLKATCRNCGRLKIPEEEKGE 117
Query: 107 AQRLLSSCCEV----------------------------------------------KEM 120
RLLS E+ + +
Sbjct: 118 YLRLLSDLQELGAPYLIKRFHEYIRRKASTADTCPHCGAKQYKIKLEKPHTFYEQTERGL 177
Query: 121 LKRIPEETRKKLAG--------KGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMS 168
LK P E R +L G P D +L LPVPP + P + S
Sbjct: 178 LKLTPSEVRGRLEKISNDDVKLLGGDPSDARPEWMVLTVLPVPPRSVR-PSVLLETGIRS 236
Query: 169 SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSS-RD 225
D L +++ +R G E E LQ + Y EV G + R
Sbjct: 237 EDDLTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHITTYFDNEVPGVPVAKHRS 296
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
G++Q + +R K FS+R+VI+ D +NE+GVP ++A+ +
Sbjct: 297 GKTLKGIAQRLKGKEGRFRNNLRG----KRVDFSARTVISPDPSLSINEVGVPEDVAKIL 352
Query: 286 TFEERVNVHNINYLQELVDNKL-------CLTYSDGSS-SYSLREGSKGHTFLRPGQVVH 337
T ERV NI +++LV N + DG S + L PG +V
Sbjct: 353 TIPERVTPWNIEEMRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLEPGFIVE 412
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R +MDGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQ
Sbjct: 413 RHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQ 472
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL--AM 454
S A+AE L VE+ +L+ G + D + ++ K LDK L +
Sbjct: 473 SEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSST 532
Query: 455 FALSPLPRPALSKARCSARWTALQILQSVLPPGFD-------------SCGDR------- 494
LP PA+ K R A WT Q++ LP F+ C D
Sbjct: 533 GYKGELPEPAILKPR--ALWTGKQLVSLFLPKDFNYKRNSKIGSAAALRCIDEDCPHDSL 590
Query: 495 YLIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+IK +L+G D+ +I E +V + E G + F D + + + G +
Sbjct: 591 VIIKNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKYGLT 650
Query: 554 VSLEDFSLSKAA-------LWNIQKEIQALYS------LLYHRMST-----QNELVDLQI 595
+S +L + A + +KE++ L S LL T ++E++D+
Sbjct: 651 MSYTHLTLPEEARNRLSEIIAGKKKEVEELISKYRRGELLARPGKTVKETLEDEIIDILS 710
Query: 596 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
+ + V ++ + + + + + + + Q A LG Q + RGK ++ +
Sbjct: 711 KKLLDSVAEVITPYFTLVNPVVIMARTGARGNPVNLTQMAALLG-QQTVRGKRLTRGYLG 769
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF+ P DL P A+ G I F HGL+P E H+ + RE ++ ++ S+ G
Sbjct: 770 RALPHFK---PEDLG-PEAR-GFIASGFVHGLNPVEMFFHAAAGREGLIDTAVRTSQSGY 824
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L+D+ + YDG+VR + + I+Q Y
Sbjct: 825 MQRRLINALQDLRVEYDGSVR-LTTGEIVQLLYG 857
>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
Length = 889
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 196/827 (23%), Positives = 352/827 (42%), Gaps = 150/827 (18%)
Query: 48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHI--------------SELKLT 93
LG+ +CE+CG ++ +C GHFG IEL P+ HP + LKLT
Sbjct: 61 LGVDEPEARCETCG-NDWRRCPGHFGRIELVRPVVHPEFVKPIYDILRATCPNCGRLKLT 119
Query: 94 MYAFQ---------------------LQIKNDGVAQRLLSSC------------------ 114
++ L++K A+ C
Sbjct: 120 DEEYKRYSERIKRLKKHWRALSDRLILRVKKKAAARSTCPHCGAPQPKIRLDKPFKFYTE 179
Query: 115 -----------CEVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPD 159
++E L+++P++ + L G+ P +L LPVPP + P
Sbjct: 180 SEDGRLTRLDPVSIREWLEKVPDDDLELL---GWNPSTARPEWAVLTVLPVPPPQVR-PS 235
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLE--- 215
I S+D L +L+ E +R++ SG+P ++ + LQ V Y++
Sbjct: 236 IQLPSGQTSADDLTHALTTILRYNEKLRNAIESGSPTTSILDL-WDSLQANVATYIDNEL 294
Query: 216 ---VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
++ +S R + G++Q K + R K FS+R+VI+ D +
Sbjct: 295 PGGIQARHRSKRPLK---GIAQ----RLKGKEGRFRGSLSGKRVEFSARTVISPDPNLSI 347
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELV---------DNKLCLTYSDGSSSYSLREG 323
NE+GVP +IA+ +T E V NI+ ++ LV N++ R+
Sbjct: 348 NEVGVPIDIAKELTVVEPVTEWNIDLMRMLVVNGPETWPGANRVITPDGKKIELKVRRDR 407
Query: 324 SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
S+ ++PG ++ R +MDGD V NR P+ HK S+ V V T +++ +C P +
Sbjct: 408 SELAQQIQPGWMIERHLMDGDYVLFNRQPSLHKMSMMCHIVKVLPGRTFRLHLAVCPPYN 467
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYF 443
ADFDGD ++L PQ+ A+AE + V+ +++ G + D + ++ +K
Sbjct: 468 ADFDGDEMNLHVPQTPEARAEARTIMLVQNFIVTPRYGGPIIGARQDYISGGYLLSRK-- 525
Query: 444 LDKAFTQQLAMFALSP------LPRPALSKARCSARWTALQILQSVLPPGFD-------- 489
T++ A+F L L PA+ WT QI+ ++LP F+
Sbjct: 526 -GNVLTREKALFILGAVRENVQLEEPAIMHP--VELWTGKQIISTLLPKDFNFTQATSFK 582
Query: 490 -SCGDRYLIKKSEVL--------KGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSL 539
+C D Y E + G D+ +I + ++ ++ + G E + DS+
Sbjct: 583 STCSDPYRCDTDEYIVVVNGYLATGVLDKKSIGAEQVDSLLHVLVKRYGNEFGRRWIDSM 642
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQK----EIQALYSLL--YHRMSTQNE---L 590
L++ + GF+++L+ +L + A+ + + I+ Y LL Y++ + + E
Sbjct: 643 FRLIIRYIDIRGFTMALDSLNLPEDAMKKLDEVKNTYIKEAYELLDKYYKGALEAEPGKT 702
Query: 591 VDLQIENHI--------RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
++ +E+ + +V ++ K S + + + + ++ Q LG Q
Sbjct: 703 IEETLEDKLAETLSKIREEASKIVDDYMNKESEVYIMAKTGARGSLLNAAQMTAALG-QQ 761
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ RG+ Y + + HF P D P A+ G +K F GL P E H+ R+
Sbjct: 762 TIRGERYRRGFTDRTLPHF---LPGDKG-PEAR-GFVKSNFRDGLSPIEYFFHAGGGRDG 816
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+V ++ S+ G + L+ ++D+ + YDGTVR+ ++IIQF Y
Sbjct: 817 LVETAVRTSQSGYAQRRLINAMQDIYVAYDGTVRD-SQDAIIQFKYG 862
>gi|67524109|ref|XP_660116.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
Length = 2092
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 183/706 (25%), Positives = 304/706 (43%), Gaps = 96/706 (13%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
+R+ S CE +L P+E R ++ ++ +++P PP C+ P + S+
Sbjct: 892 KRISDSDCE---LLGLDPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDASST 937
Query: 168 SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDV 226
DL+ + V + + + G P E + LQ+AV +V G K+
Sbjct: 938 EDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGK 997
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
R V + K + R K FS R+VI+ D RV+E+ VP +A+ +T
Sbjct: 998 PIRGFVQR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMT 1052
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQ 334
+ E VN +N LQ+ V N ++Y +++G+ T L+ G
Sbjct: 1053 YPEVVNRYNKEKLQQCVRNG---QKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGD 1109
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R I DGD V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L
Sbjct: 1110 IVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLH 1169
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLA 453
PQ+ A+AE +EL V+ L + NG + D + + ++ K F D+ Q+
Sbjct: 1170 VPQTEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQIC 1229
Query: 454 MFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SC-------- 491
++ L P LP PA+ K + WT Q+ ++ P D +C
Sbjct: 1230 LYMLGPQTRFDLPPPAVFKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPKG 1287
Query: 492 --------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQP 541
D +L ++ SEV+ G D+ T+ S + V I GP E + L
Sbjct: 1288 NQPRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSK 1347
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QN 588
L GFS+ + D S + + ++A Y+ + ++ T +
Sbjct: 1348 LSARWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDEL 1407
Query: 589 ELVDLQIENHIRHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ ++ Q+ + V+ +A+ +S L + S S + V Q +G Q+
Sbjct: 1408 QTMENQLSGILSKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQII 1466
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G+ + HF P + P +K G ++ FF GL PYE + H++S RE +
Sbjct: 1467 G-GQRVQDGFQDRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPYEFIFHAMSGREGL 1520
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
V ++ +E G + + LM L D+ YD TVRN S I+QF Y
Sbjct: 1521 VDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRN-SSQGIVQFQYG 1565
>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
Length = 878
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 216/867 (24%), Positives = 341/867 (39%), Gaps = 156/867 (17%)
Query: 13 QIVGIRFGLATQKE---------ICTASISDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I I FGL + +E I + D L +P LG+ +C SCG
Sbjct: 8 RIGKISFGLISPQEFRRMSVVKIITADTYDDDGFPIEMGLMDPRLGVIDPGLRCRSCG-G 66
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLT----------------------MYAFQLQI 101
PG+C GHFG+I+L P+ H+ KL MY Q++
Sbjct: 67 RPGECPGHFGHIDLIAPVI---HVGFAKLIRKILRAICRDCSRLMLLENEKRMYLEQIET 123
Query: 102 ------KNDGVAQRLLSSC---------------------------------CEVKEMLK 122
D V ++ S ++++ +
Sbjct: 124 LVRLGQTTDDVVNKVFSEARKHKVCPYCGAPQQEIKFERPLAYVEEGHKLTPSDIRDRFE 183
Query: 123 RIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+IP+E K + G P +L LPVPP + P I+ S D L
Sbjct: 184 KIPDEDIKVM---GMNPDTARPEWMLLTVLPVPPVTMR-PSITLESGQRSEDDLTHKLVD 239
Query: 179 VLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQD 235
+++ + + +R +G P +++ LQ + +L+ V G + S
Sbjct: 240 IIRINQRFQENREAGAPQLIIEDLWEL-LQYHITTFLDNTVSGVPPARHR-------SGR 291
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FS+R+VI+ D +NE+GVP EIA ++ V
Sbjct: 292 PLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPLEIAMELSVPLVV 351
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSS-SYSLREGSKGHTFLRPGQVVHRRIMDG 343
N NI +++ V +T +DG + R + L PG V R++MDG
Sbjct: 352 NGRNIEVMRDFVRRGADKHPGVNYVTRADGRRVKVTDRNAEEVADQLEPGWKVDRQLMDG 411
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ H+ S+ + V V T ++NP +C P +ADFDGD ++L PQ+ A+A
Sbjct: 412 DIVLFNRQPSLHRMSIMSHRVIVMPHKTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARA 471
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPL--- 460
E L V++ +LS G + D + F D+ ++ M L L
Sbjct: 472 EAEILMRVQENILSPRFGGPIIGGIHDYVTG---NFLLTHGDRRISRIEVMEVLKKLHHL 528
Query: 461 --PRPALSKARCSARWTALQILQSVLPPGF------------DSC------GDRY-LIKK 499
P P WT QI +LP G DSC D Y +I+
Sbjct: 529 EIPEPVGWNEAGEPYWTGKQIFSLILPRGLNLEFKASFCKNCDSCKREACDDDAYVVIRD 588
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
++L G D + + +I + E GP F D + + + + GFS ++D
Sbjct: 589 GKILTGTIDAAAVGAFKGKITDRVIKEYGPTVGAGFIDGMTQMAIRGIMLAGFSFGIDDE 648
Query: 560 SLSK-----------AALWNIQKEIQA-----LYSLLYHRMSTQNELVDLQIENHIRHVK 603
+ K AA N+ K I A L L + E+ +Q R
Sbjct: 649 DIPKDAEDQIEDVLNAARENVTKLIDAYKAGELEPLPGRTLDETLEMRIMQTLGKARDNA 708
Query: 604 MLVAKFILKSSTLGYLID-SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L G ++ S + ++ + Q A +G Q S RG+ + HF
Sbjct: 709 GSIAGRYLGIDNSGVVMAVSGARGSMLNLTQMAACVG-QQSVRGERIRRGYEGRTLPHFR 767
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
R DL +G ++ + GL+P E H+I RE +V ++ S+ G L + L+
Sbjct: 768 R---GDLG--AEAHGFVQSSYKEGLNPTEFFFHAIGGREGLVDTAIRTSQSGYLQRRLIN 822
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+D+ + YDGTV+ I+QF Y
Sbjct: 823 ALQDLEVQYDGTVKE-TRGIIVQFSYG 848
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 280/629 (44%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + ++ + G+P + E+ LQ V Y++ + GT ++ +
Sbjct: 272 DLTFKLGDIIRANGNVRQAQQEGSPAHILSDFEAL-LQYHVATYMDNDIAGTPQALQK-- 328
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 329 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 383
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NIN+L +LV N + +DG+ + L G V
Sbjct: 384 TLTYPETVTPYNINHLSKLVRNGPNDHPGAKYVMRADGTRIDLRHNKNSAGVNLEYGWKV 443
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 444 ERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 503
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
Q+ +AEV+ L V ++S + + D L + M ++ F+ K + ++
Sbjct: 504 QTEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFITKEHLMNILLW 563
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFDSCGDRYLI 497
+P+PA+ K R RWT QI+ ++P P D D L+
Sbjct: 564 VPEWDGVIPQPAILKPR--PRWTGKQIVSMIIPKIVNLHTANDAREDAPLKD---DGLLV 618
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ E++ G + + + I+ IF E+GP+ + FF+ Q ++ L +GFS+ +
Sbjct: 619 HEGELMFGLLTKKNVGASSGGIIHIIFNEQGPDAAMAFFNGCQRVVNYWLLHNGFSIGIG 678
Query: 558 DFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI----- 610
D K+ + I+ IQ + +T NEL L N + LV+K +
Sbjct: 679 DTIPDKSTIEKIEGAIQVQKDEVAELTAKATANELESLPGMNVRETFESLVSKALNTARD 738
Query: 611 ---------LKSSTLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
LK S + S S + + Q +G Q S GK H
Sbjct: 739 KAGTKTEDSLKDSNNAVQMARSGSKGSTINISQMTALVG-QQSVEGKRIPFGFKYRTLPH 797
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 798 FTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRL 852
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L DV+ YDGTVRN + I+QF Y
Sbjct: 853 VKALEDVMAKYDGTVRNSLGD-IVQFVYG 880
Score = 43.9 bits (102), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASI---------SDCSISHASQ-LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ + + Q L +P LG KC +C +
Sbjct: 19 IQFGLLSPEEIKNMSVVHILYPETMDESRMKPRDQGLNDPRLGSIDRQFKCGTC-DQQMS 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++HP I ++K
Sbjct: 78 ECPGHFGHIELAKPVFHPGFIKKIK 102
>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus terrestris]
Length = 1385
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 186/695 (26%), Positives = 302/695 (43%), Gaps = 75/695 (10%)
Query: 116 EVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EV+ +L++IPE L + P+D IL +PVPP C+ +SD + + D
Sbjct: 222 EVQSILEKIPESDIPLLLMNSECALPKD-LILTRIPVPPICIRPSVVSDLKAGTTEDHLT 280
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
L +++ ++I+ R + + LQL Y+ E+ G + + + G
Sbjct: 281 MKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRG 340
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ Q K + R K FSSR+VI+ D R+ ++GVP +A+ +T+ ERV
Sbjct: 341 LVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERV 396
Query: 292 NVHNINYLQELVDNKLCLT-----YSDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMD 342
N NI +++LV N + G + + L+ G++ L+ G +V R + D
Sbjct: 397 NPSNIELMRKLVRNGPDIHPGANFIQQGKTQFKKFLKYGNRQKIAQDLQYGDIVERHLRD 456
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
D V NR P+ HK S+ A V D T + N +C P +ADFDGD ++L PQ+ A+
Sbjct: 457 DDVVLFNRQPSLHKLSIMAHKAKVLDHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAR 516
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--- 458
AE L L + L++ NG L + D + ++ +K FL+KA QLA L+
Sbjct: 517 AEALILMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKAQASQLAGCLLAGPD 576
Query: 459 -----PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY---------- 495
LP PA+ K S WT QI +L P + G Y
Sbjct: 577 IAMSISLPEPAILKP--SMLWTGKQIFSLILKPNSTCNIKANLKTKGRAYTSNQELCIND 634
Query: 496 ---LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF-FDSLQPLLMENLFADG 551
+I+ SE+L G D+ T+ S + + I E++ L + L G
Sbjct: 635 SYVIIRNSELLAGTMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRG 694
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENH 598
FS+ + D + + L +K + A YS L+ ++ E ++ I
Sbjct: 695 FSIGIGDVTPGQGLLKAKEKLLNAGYSKCTEYICQMEEGRLVCQPGCSEEETLEAMILKE 754
Query: 599 IRHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ ++ K LK S++ + S S + + Q +G Q + G
Sbjct: 755 LSVIRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVG-QQAISGHRVPNGFE 813
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HFER P AK G ++ F+ GL P E H++ RE +V ++ +E G
Sbjct: 814 DRALPHFER----HSKIPAAK-GFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETG 868
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+ + YD TVRN + IIQ Y
Sbjct: 869 YMQRRLVKSLEDLCLHYDMTVRNSVGD-IIQILYG 902
>gi|302348974|ref|YP_003816612.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
345-15]
gi|302329386|gb|ADL19581.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
345-15]
Length = 889
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 190/705 (26%), Positives = 317/705 (44%), Gaps = 102/705 (14%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSV-PDISDGVSTMSSD 170
+V+E L++IP++ + L G+ P+ +L LPVPP LSV P I+ + + D
Sbjct: 187 DVRERLEKIPDDDVELL---GWDPKSARPEWAVLTVLPVPP--LSVRPSITMESGSRAED 241
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
L ++++Q E +++ S + E LQ + Y++ ++ +
Sbjct: 242 DLTHALAEIVRQNERLKNFISSSAPESMIEEAWQALQNVIAAYID--------NELPNIY 293
Query: 231 GVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
+S K ++++ R K FSSR+VI+ D +NE+GVP E+A+
Sbjct: 294 QLSHRGRKQLKTLAQRLKGKEGRLRGNLNGKRVNFSSRTVISPDPLISINEVGVPIEVAK 353
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF-----------LRP 332
+T V NI ++ V N + + Y REG K L
Sbjct: 354 ILTVPMVVTKFNIEEARKYVLNG-PYQWPGATIVYKKREGVKLDLRYQRNLRQLAESLEV 412
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G +V R ++DGD V NR P+ H+ S+ V V T ++N L+C P +ADFDGD ++
Sbjct: 413 GDIVERHLIDGDIVLFNRQPSLHRMSIMGHKVRVMPGRTFRLNLLVCAPYNADFDGDEMN 472
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD-----ALLSLKVMFKKYFLDKA 447
L P+ A+AE L L VE +L+ G + D LL++K F +A
Sbjct: 473 LHVPRLEEARAEALNLLLVENHILTPRYGGPIIGGRQDYISGAYLLTVKTTL---FDREA 529
Query: 448 FTQQLAMFALS-PLPRPALSKARCSARWTALQILQSVLPPGFDSCG-------------- 492
+ LA + S LP PA+ K R WT Q++ LP F+ G
Sbjct: 530 VGRLLAAASYSGELPEPAILKPR--PLWTGKQLVSLFLPSDFNFSGRAKINAGDLKCDGE 587
Query: 493 ----DRY-LIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
D Y +I++ +L+G FD++TI + E ++ I E G + D++ + +
Sbjct: 588 DCFFDSYVVIRRGRLLEGVFDKNTIGAEQPESVLHYIALEYGNAAARQLLDTMYRMFIRM 647
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQA----LYSLLYHRMS---------TQNELVDL 593
L GFS+S+ D + K A I K + + L+ + T E ++L
Sbjct: 648 LELRGFSISISDIEIPKEARDKIAKMTEEAKEDVMKLIEQYRNGTLEIIPGRTLEESLEL 707
Query: 594 QIENHIRHVKMLVAKFILKSSTLGYL-------IDSKSDSAVS--KVVQQAGFLGLQLSD 644
+I ++ ++ K + +GY+ I +++ + S + Q A LG Q +
Sbjct: 708 KIIQRLQKLRDDAGK-----TAIGYMNPFNNAFIMARTGARGSDINITQMAAMLG-QQTV 761
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
RG+ + HF P DL+ P A+ G + F GL P+E H+ RE +V
Sbjct: 762 RGRRIVRGFRTRTLPHFR---PGDLS-PEAR-GFVVSNFRDGLKPHEVFFHAAGGREGLV 816
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ S+ G + + L+ L+D+ + YDGTVR+ ++IIQF Y
Sbjct: 817 DTALKTSQSGYMQRRLINALQDLHVAYDGTVRD-SQDNIIQFRYG 860
>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Apis mellifera]
Length = 1374
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 185/699 (26%), Positives = 306/699 (43%), Gaps = 77/699 (11%)
Query: 116 EVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EV+ +L++IPE L + P+D IL +PVPP C+ +SD + + D
Sbjct: 222 EVQSILEKIPENDIPLLMMNTECALPKD-LILTRIPVPPICIRPSVVSDIKAGTTEDHLT 280
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
L +++ ++I+ R + + LQL Y+ E+ G + + + G
Sbjct: 281 MKLSEIVFINDVIQKHRQSGAKVQMYSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRG 340
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ Q K + R K FSSR+VI+ D R+ ++GVP +A+ +T+ E+V
Sbjct: 341 LVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKV 396
Query: 292 NVHNINYLQELVDNKLCLT-----YSDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMD 342
N NI +++LV N + G + + LR G++ L+ G +V R + D
Sbjct: 397 NPSNIELMRKLVRNGPDIHPGANFIQQGKTQFKKYLRYGNRQKIAQDLQYGDIVERHLRD 456
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
D V NR P+ HK S+ A + D T + N +C P +ADFDGD ++L PQ+ A+
Sbjct: 457 DDVVLFNRQPSLHKLSIMAHKAKILDHRTFRFNECVCTPYNADFDGDEMNLHVPQTEEAR 516
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-- 459
AE L L + L++ NG L + D + ++ +K FL+K QLA L+
Sbjct: 517 AEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKTQASQLAGCLLAGPD 576
Query: 460 ------LPRPALSKARCSARWTALQILQSVLPPGFDSC---------------------G 492
LP PA+ K + WT QI +L P ++C
Sbjct: 577 IAMSINLPEPAILKP--TTLWTGKQIFSLILKPN-NTCNIKANLKTKGRAYTTNEELCIN 633
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF-FDSLQPLLMENLFAD 550
D Y +I+ SE+L G D+ T+ S + + I E++ L + L
Sbjct: 634 DSYVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNR 693
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIEN 597
GFS+ + D + + L Q+ + A YS L+ T+ E ++ I
Sbjct: 694 GFSIGIGDVTPGQGLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILK 753
Query: 598 HIRHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ ++ K LK S++ + S S + + Q +G Q + G
Sbjct: 754 ELSVIRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVG-QQAISGHRVPNGF 812
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HFER + P AK G ++ F+ GL P E H++ RE +V ++ +E
Sbjct: 813 EDRALPHFERHSKI----PAAK-GFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAET 867
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
G + + L+ L D+ + YD TVRN + I+Q Y +A
Sbjct: 868 GYMQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYGGDA 905
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 171/640 (26%), Positives = 277/640 (43%), Gaps = 71/640 (11%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
D DG T DL+ + + + R GTP +E E+ LQ V Y+
Sbjct: 185 DGGDG-PTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETL-LQFHVATYMSNDT 242
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ + KS R V A + K ++R + K FS+R+VITGD +
Sbjct: 243 AGQPQALQKSGRPVKA-------IRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSL 295
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK------- 325
+E+GVP IA+ +T+ E V +NI+ L +LV N + Y +R+ +
Sbjct: 296 DEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNG---PNEHPGARYVIRDSGERIDLRFH 352
Query: 326 ---GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
G L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P
Sbjct: 353 RRAGDLVLQYGWQVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 412
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK- 441
+ADFDGD ++L PQS +AE+ +L V ++S + + D L + M ++
Sbjct: 413 NADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKMCRRD 472
Query: 442 YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------PGF 488
FL + + ++ +P+PA+ K R RW+ QI+ VLP GF
Sbjct: 473 VFLSEEQVMNILLWVPDWDGVIPQPAILKPR--PRWSGKQIISLVLPFTLNYLQADKAGF 530
Query: 489 DSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
D + E++ G F + + + I+ IF EKGPE L FF+ Q ++ L
Sbjct: 531 SPLKDEGVFVDGGELMYGLFRKQAVGASKQGIIHIIFNEKGPEAALNFFNGAQTVVNYWL 590
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNELVDL-------QIENH 598
+GFS+ + D + + I+ + Q R +T +EL L E+
Sbjct: 591 LHNGFSIGIGDTIPDRKTIQGIENAVSEQKTEVTEITRKATADELESLPGMSIRETFESK 650
Query: 599 IRHVKMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
++ + A+ + T L D S S + + Q +G Q + GK
Sbjct: 651 VQ-AALNQARENAGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQAVE-GKRI 708
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
HF + +Y G ++ + GL P E H+++ RE +V ++
Sbjct: 709 PFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLVDTAVK 763
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV+ YDGTVRN + ++QF Y
Sbjct: 764 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYG 802
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 193/772 (25%), Positives = 326/772 (42%), Gaps = 101/772 (13%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L M + D ++ + V E KRI +E L Y
Sbjct: 168 YQP-RIRRQGLGMIGEWKHVDEDSQETTIVLTADRVLENFKRISDEDCAILGMDPKYARP 226
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D IL LPVPP + ++ S D++ ++ V E+ + RSG N E +
Sbjct: 227 DWMILTCLPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGE-NDEIID 285
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNS----TTKAWLE----KMRTLFI 252
+ N LQ +G + + RF S + + K LE ++R +
Sbjct: 286 QKINLLQSHIGTMM---------MNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLM 336
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R++IT D R++++GVP IAQ +TF E V NI +QELV
Sbjct: 337 GKRVDFSARTIITPDPNLRIDQVGVPRIIAQNMTFPEIVTPVNIEKMQELVQR------- 389
Query: 313 DGSSSYSLREGS--------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
G + Y +RE + K + L G V R I DGD V +NR P+ K + V
Sbjct: 390 -GEAKYLIRENADRIDLKYVKKNPVLEIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRV 448
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V ++++NP P +A+FDGD +++ +PQSL ++EV + +Q+++
Sbjct: 449 KVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQSLETRSEVENILLTPRQIITPQANKPV 508
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L+ + K+ FL K L MF + +P+PA+ K R WT Q+
Sbjct: 509 MGIVQDTLVGTSKLTKRDVFLQKEQMMNLLMFLPTWDGKMPKPAILKPR--PLWTGKQLF 566
Query: 481 QSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
++P + S GD + +I+ E++ G + T+ + +
Sbjct: 567 TLIIPGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASL 626
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ-ALYS 578
+ IF E G E F+ ++Q ++ L +G S+ + D NIQ IQ A
Sbjct: 627 LHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDMLADHQTYLNIQATIQNAKED 686
Query: 579 LLYHRMSTQNELVDLQIENHIRHV----------------KMLVAKFILKSSTLGYLIDS 622
++ +QN+ ++ N +R L + + + L + +
Sbjct: 687 VIEVLQRSQNDELEPTPGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMAVA 746
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
S + Q +G Q + + F +TL HF + D N P ++ G
Sbjct: 747 GSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTL-----PHFIK----DDNGPESR-GF 796
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H+++ RE+++ +R SE G + + L+ + V++ YDGTVRN
Sbjct: 797 VENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETG-IIRQLVKGMESVMVHYDGTVRN- 854
Query: 739 CSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNN 790
+ I+QF Y + + S+ P +SN ++ PS+ N
Sbjct: 855 SAGRILQFSYGEDGLAAESVELQKMP-----TVKLSNSVFEKKFKFDPSNEN 901
>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
Length = 981
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 168/628 (26%), Positives = 281/628 (44%), Gaps = 68/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E ES LQ V Y++ + G ++ +
Sbjct: 177 DLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESL-LQFHVATYMDNDIAGQPQALQK-- 233
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 234 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 288
Query: 284 RITFEERVNVHNINYLQELV----DNKLCLTY--SDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV ++ Y D LR + G L+ G V
Sbjct: 289 TLTYPETVTPYNIHKLHQLVKTGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 348
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 349 ERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 408
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFA 456
QS +AE+ +L V ++S + + D L + M ++ D T++ AM
Sbjct: 409 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRR---DVFLTKEQAMNI 465
Query: 457 L-------SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIK 498
L +P+PA K R +WT QI+ V+P G + + D +
Sbjct: 466 LLWVPDWDGVIPQPATLKPR--PKWTGKQIISLVIPAGLNLIRPSSEGLSPANDDGLFVH 523
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G F + ++ + IV +F EKGP+ ++FF+ Q L+ L +GFS+ + D
Sbjct: 524 GGELMYGLFMKKSVGASGGGIVHIVFNEKGPDAAMKFFNGAQTLVNYWLLHNGFSIGIGD 583
Query: 559 FSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFILK---- 612
+ + I+ + + + + +T+N L L N + V+K + K
Sbjct: 584 TIPDRNTIQKIENAVNTQKADVADITQSATENTLEALPGMNVRETFESKVSKALNKARDD 643
Query: 613 --SSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
++T L D S S + + Q +G Q S GK HF
Sbjct: 644 AGTATEESLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHF 702
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 703 TKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 757
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV+ YDGTVRN + I+QF Y
Sbjct: 758 KALEDVMAKYDGTVRNSLGD-IVQFIYG 784
>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
Length = 998
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 171/636 (26%), Positives = 277/636 (43%), Gaps = 66/636 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G P E E N LQ V Y++ +
Sbjct: 168 DGANGMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFE-NLLQFHVATYMDNDIA 226
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 227 GLPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 279
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 280 EVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 339
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD + N HK S+ V V T ++N + P +ADF
Sbjct: 340 EISLQYGWKVERHIVDGDFMIFNGXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 399
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L V ++S + + D L + K+ + FL
Sbjct: 400 DGDEMNLHVPQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKICRRDVFLS 459
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------GFDSCG 492
+ + ++ +P+PA+ K R RWT QI+ VLPP GF
Sbjct: 460 EEQVMNILLWVPDWDGVIPQPAILKPR--PRWTGKQIISLVLPPTLNYLQLDKSGFSPIN 517
Query: 493 DR-YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D L+ EV+ G F + + + I+ IF EKGPE L FF+ Q ++ L +G
Sbjct: 518 DAGMLVDGGEVIFGLFRKQAVGASKQGIIHIIFNEKGPEAALNFFNGAQTVVNYWLLHNG 577
Query: 552 FSVSLEDFSLSKAALWNIQKEI--QALYSLLYHRMSTQNELVDL-------QIENHIRHV 602
FS+ + D + + I+ + Q + R +T +EL L E+ ++
Sbjct: 578 FSIGIGDTIPDRKTIQGIENAVSEQKKEVIEITRKATADELESLPGMSIRETFESKVQ-A 636
Query: 603 KMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ A+ + T L D S S + + Q +G Q + GK
Sbjct: 637 ALNQARENAGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQAVE-GKRIPFGF 695
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 696 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 750
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV+ YDGTVRN + ++QF Y
Sbjct: 751 GYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYG 785
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 180/682 (26%), Positives = 303/682 (44%), Gaps = 59/682 (8%)
Query: 117 VKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
V E+ K I EE L + Y D +L L VPP C+ + G + DL+ +
Sbjct: 214 VYEIFKHISEEECFCLGMDERYAKPDWMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKL 273
Query: 176 LKKVLKQVEIIRSSRSGT-PNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ 234
V EIIR+ +SG P+ ++ V+ +A E+ G ++ + S
Sbjct: 274 SDIVKANNEIIRNEQSGAAPHILTENVKMLQFHVATLYDNELPGLPRAMQK-------SG 326
Query: 235 DPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
P + K L+ ++R + K FS+R+VIT D +++E+GVP IAQ +TF E
Sbjct: 327 RPLKSLKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIAQNLTFPEI 386
Query: 291 VNVHNINYLQELV---DNKLC---LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDG 343
V NI ++QELV +N+ D LR K L+ G V R + +G
Sbjct: 387 VTPFNIEWMQELVSRGNNQYPGAKYIVRDNGERIDLRFHPKASDLHLQCGYKVERHVQNG 446
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D + NR PT HK S+ + V T ++N + P +ADFDGD +++ PQSL +A
Sbjct: 447 DIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLETRA 506
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SP 459
E+ +L V +Q+++ + + D L +++ M K+ +L+K L MF
Sbjct: 507 EIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIWNGK 566
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIK 498
+P PA+ K + WTA Q+ ++P + S GD + +I+
Sbjct: 567 VPIPAILKPK--PLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVIIE 624
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
++L G + T+ + ++ +F E G F+ LQ ++ L +G S+ + D
Sbjct: 625 HGQLLSGIVCKKTVGASAGSLMHVLFVEMGHRVAGAFYSHLQTVVNAWLLYEGHSIGIGD 684
Query: 559 FSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSS 614
+ +IQ I +A ++ N+ ++ N +R IL +
Sbjct: 685 TIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDK 744
Query: 615 TLGYLIDSKSD--SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF---ERIYP--M 667
T G S S+ + S VV A + +S + VE F +R P +
Sbjct: 745 TGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 804
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
++ G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 805 KDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 864
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
+ICYDGTVRN + +IQF Y
Sbjct: 865 MICYDGTVRN-SNGQVIQFRYG 885
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 148/546 (27%), Positives = 252/546 (46%), Gaps = 53/546 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 17 RIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRN 76
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R IMD D V NR P+ HK S
Sbjct: 77 GPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMS 136
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 137 MMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPMQIVSP 196
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSA 472
+ + + D L + K+ + F++ F Q L M P +P+PA+ K +
Sbjct: 197 QSNKPCMGIVQDTLCGIRKLTLRDSFIE--FDQVLNMLYWVPDWDGVIPQPAILKPK--P 252
Query: 473 RWTALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEIV 520
WT QIL +P G FD + L+ +++ G D+ T+ S ++
Sbjct: 253 LWTGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLVIDGQIVFGVVDKKTVGSSSGGLI 312
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLSKAAL 566
+ EKGP+ + F ++Q ++ L +GFS + D + +K +
Sbjct: 313 HVVTREKGPQVCAKMFGNIQKVVNFWLLHNGFSTGIGDTIADGETMKEITETIAEAKKKV 372
Query: 567 WNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILK-SSTLGYLIDSK 623
+ KE QA H M+ + D ++ N R +A+ L ++ + ++ +
Sbjct: 373 EEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAG 432
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q + +G Q S GK + V+ HF + +Y G ++ +
Sbjct: 433 SKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHFSKD-----DYSPESKGFVENSY 486
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H++ RE ++ ++ +E G + + L+ L D+++ YD T RN N +
Sbjct: 487 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGN-V 545
Query: 744 IQFDYA 749
IQF Y
Sbjct: 546 IQFVYG 551
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 180/709 (25%), Positives = 310/709 (43%), Gaps = 98/709 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPDIS-DGVST 166
R + + +V+E+ + I ++ + + F + ++L LPVPP + P +S DG S
Sbjct: 119 RKVITPSKVREVFRVISDQDCRDMGLSPEFARPEWMLVTVLPVPPPQVR-PSVSMDGASG 177
Query: 167 -MSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAK 221
M S DL+ + + + + R +P ++E E LQ V ++ + G +
Sbjct: 178 GMRSQDDLTFKLGDILKANIALKRHDAENSPAHITREFEEI-LQYHVATMVDNNISGMPQ 236
Query: 222 SSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
+ + S P + + L+ ++R + K FSSR+VITGD ++E+GV
Sbjct: 237 AMQK-------SGRPIKSIRQRLKGKEGRIRGNLMGKRVDFSSRTVITGDPNISIDEVGV 289
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS----------KGH 327
P IA+ +TF E V HN+ LQELV N ++Y +R+ G
Sbjct: 290 PRSIARTLTFPEIVTPHNVARLQELVRNG---ALEHPGANYIVRQSGDRISLKFVPQAGD 346
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R + DGD V NR P+ HK S+ V + T ++N + P +ADFD
Sbjct: 347 QPLQIGDTVERHLQDGDYVIFNRQPSLHKMSMMGHRVKIMPFSTFRLNLSVTTPYNADFD 406
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDK 446
GD ++L PQS +AE+ E+ V +Q++S + + D + K + + +
Sbjct: 407 GDEMNLHAPQSYETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRDNMMTR 466
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGD---------- 493
+ M+ P PA+ K + WT Q++ V+P + G
Sbjct: 467 DMVMNICMWIPDWDGQPPPPAILKPQ--PLWTGKQLMSMVIPSRINVTGKHSTHPDDERD 524
Query: 494 -------RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
+ +I+ VL G + T+ + I+ I E GPE +FF+ Q ++
Sbjct: 525 NISPGDTQVVIEDGVVLAGILSKRTVGNSAGGIIHVIMNEYGPEMAKKFFNGTQRVVNYW 584
Query: 547 LFADGFSVSLEDFSLSKAALWNI---------------------QKEIQALYSLLYHRMS 585
L +GFS+ + D KA + I Q E Q ++ S
Sbjct: 585 LLQNGFSIGIGDTVADKATMHQINQILKRAKEDVGETIARAQQNQLEPQPGMTIRETFES 644
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
N++++ E+ + +A F + ++D+ S + + Q A +G Q +
Sbjct: 645 VVNKILNKAREDAGKAATKSLAPF----NNAKQMVDAGSKGSEINISQMAACVGQQ-NVE 699
Query: 646 GK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
GK F +TL HF + D P ++ G ++ + GL P E H++ R
Sbjct: 700 GKRIPFGFRLRTL-----PHFTK----DDQSPESR-GFVENSYLRGLTPQEFFFHAMGGR 749
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E ++ ++ +E G + + L+ L DV++ YDGTVRN + +IQF Y
Sbjct: 750 EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VIQFAYG 797
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 185/752 (24%), Positives = 325/752 (43%), Gaps = 87/752 (11%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
D DG T DL+ + + + R GTP +E E+ LQ V Y+
Sbjct: 166 DGGDG-PTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETL-LQFHVATYMSNDT 223
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ + KS R V A + K ++R + K FS+R+VITGD +
Sbjct: 224 AGQPQALQKSGRPVKA-------IRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSL 276
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLR-EGSK 325
+E+GVP IA+ +T+ E V +NI+ L +LV N DG LR
Sbjct: 277 DEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPGARYVIRDGGERIDLRFHRRA 336
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
G L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 337 GDLVLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 396
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQS +AEV +L V ++S + + + D L + K+ + FL
Sbjct: 397 FDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFL 456
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-GDRY----- 495
+ + ++ +P+PA+ K + WT QI+ V+P G + G Y
Sbjct: 457 NHEQVMNILLWVPEWDGIIPQPAVLKPK--PLWTGKQIVSLVIPSGLNLVKGSDYAPLKD 514
Query: 496 ---LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ E++ G ++ + + + I+ ++ EKG E + FF+ Q ++ L +GF
Sbjct: 515 EGIFVAGGELMFGLLNKKVVGAAMGGIIHIVYNEKGSEAAMNFFNGAQAVVNYWLLHNGF 574
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI 610
S+ + D + + I++ + + +M+T++ L L N + V+K +
Sbjct: 575 SIGIGDTIPDRETIRLIEEAVNTQKQEVTEITQMATESRLDTLPGMNVRETFESRVSKAL 634
Query: 611 LKS---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
K+ + + S S + + Q +G Q S GK F
Sbjct: 635 NKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKY 693
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 694 RTL-----PHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 743
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAA 770
+E G + + L+ L DV+ YDGT+RN + I+QF Y + + P + V +
Sbjct: 744 AETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLDGAHIEPQKLDIIVCSE 802
Query: 771 TAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQE 830
++D++P + S + +++ + D++V L++ +Y Q
Sbjct: 803 AKFEKDFRVDLMDNNPRTTISPDFLEQATVIAT-------DQKVQKALDE-----EYEQL 850
Query: 831 RAAYMVKNQLKRVSLKDAAVEFLIEYKKPEII 862
+AA + R + KDA+ + + P I+
Sbjct: 851 KAA----REFLRKNKKDASEDLQLPLNIPRIL 878
>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1453
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 181/695 (26%), Positives = 303/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALMKGAPVQTIVECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++GS FL+ G V+ R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPSKDDPVLVNLDAACREFKPPKDGRPKDLDPNDG 651
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S++ + + + ++A Y+ + ++ T + + ++ Q+ +
Sbjct: 712 SIGITDVYPSESLVRSKNELVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 771
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPTEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S++I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSRYDDTVRN-SSDAIVQFQYG 918
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 161/599 (26%), Positives = 266/599 (44%), Gaps = 74/599 (12%)
Query: 206 LQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
LQ V Y+ + + KS+R V A G K ++R + K FS
Sbjct: 290 LQYHVATYMDNDIAGQPKAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFS 342
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYS 319
+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L +V+N + + Y
Sbjct: 343 ARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNI---HPGAKYI 399
Query: 320 LR-EGSK----GHTFLRPGQV------VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
+R G K G+ PG++ V R I+DGD + NR P+ HK S+ A V V
Sbjct: 400 IRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMP 459
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQS ++AE+ EL V ++S + +
Sbjct: 460 YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIV 519
Query: 429 TDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L + K+ + FL K + M+ +P+PA+ K R RWT QI+ VL
Sbjct: 520 QDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPR--PRWTGKQIISMVL 577
Query: 485 PPGFD---------SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK 527
P G + +R+ I E++ G F + T+ + ++ +IF E
Sbjct: 578 PSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEY 637
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ------------- 574
GP+ + FF+ Q ++ L +GFS+ + D + I++ ++
Sbjct: 638 GPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDA 697
Query: 575 ---ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSK 630
AL L + E + N+ R V + LK G + S S +
Sbjct: 698 TRDALDPLPGMNIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTIN 757
Query: 631 VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPY 690
+ Q +G Q S GK HF + +Y G ++ + GL P
Sbjct: 758 ISQMMAIVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPT 811
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 812 EFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYG 869
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 161/599 (26%), Positives = 266/599 (44%), Gaps = 74/599 (12%)
Query: 206 LQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
LQ V Y+ + + KS+R V A G K ++R + K FS
Sbjct: 290 LQYHVATYMDNDIAGQPKAMQKSNRPVKAIRG-------RLKGKEGRLRQNLMGKRVDFS 342
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYS 319
+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L +V+N + + Y
Sbjct: 343 ARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNI---HPGAKYI 399
Query: 320 LRE-GSK----GHTFLRPGQV------VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
+R G K G+ PG++ V R I+DGD + NR P+ HK S+ A V V
Sbjct: 400 IRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMP 459
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQS ++AE+ EL V ++S + +
Sbjct: 460 YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIV 519
Query: 429 TDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L + K+ + FL K + M+ +P+PA+ K R RWT QI+ VL
Sbjct: 520 QDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPR--PRWTGKQIISMVL 577
Query: 485 PPGFD---------SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK 527
P G + +R+ I E++ G F + T+ + ++ +IF E
Sbjct: 578 PSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEY 637
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ------------- 574
GP+ + FF+ Q ++ L +GFS+ + D + I++ ++
Sbjct: 638 GPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDA 697
Query: 575 ---ALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSK 630
AL L + E + N+ R V + LK G + S S +
Sbjct: 698 TRDALDPLPGMNIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTIN 757
Query: 631 VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPY 690
+ Q +G Q S GK HF + +Y G ++ + GL P
Sbjct: 758 ISQMMAIVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPT 811
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V++ YDGTVRN + ++QF Y
Sbjct: 812 EFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYG 869
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 179/699 (25%), Positives = 300/699 (42%), Gaps = 100/699 (14%)
Query: 120 MLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI +E K L Y D IL+ LP+PP + + D S DL+ +
Sbjct: 220 ILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGV 232
+ + R R+G+P E + LQ + Y + R T +S R + +
Sbjct: 280 IRHNENLRRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC-- 336
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 337 -----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 391
Query: 293 VHNINYLQELVD--------------------NKLCLTYSDGSSSYSLREGSKGHTFLRP 332
+NI L+ELV+ +L L Y SS + L G K
Sbjct: 392 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK------- 444
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD ++
Sbjct: 445 ---VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 501
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQL 452
+ PQS +AEVLEL V K ++S + + + D LL + + K+ D T+ +
Sbjct: 502 MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR---DTFITKDV 558
Query: 453 AMFAL-------SPLPRPALSKARCSARWTALQILQSVLP----------------PGFD 489
M L +P PA+ K + WT Q+ ++P G
Sbjct: 559 FMNTLMWWEDFDGKIPAPAILKPQ--PLWTGKQVFNLIIPKQINLTRTSAWHSESETGHI 616
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD ++ I+K E+L G + + + ++ I+ E GP+ +F Q L+ L
Sbjct: 617 TPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 676
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE----------LVDLQIENH 598
+ FS+ + D A + I + I A + + + + E ++D EN
Sbjct: 677 QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMD-SFENK 735
Query: 599 IRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS 650
+ V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 736 VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIP 794
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
++ HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 795 FGFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 849
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 850 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 43.1 bits (100), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+ I H + L++P LG KCE+C T+
Sbjct: 18 VQFGILSPDEIRQMSV--VQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETC-TANMA 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG++EL P++H
Sbjct: 75 ECPGHFGHLELAKPMFH 91
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 169/654 (25%), Positives = 287/654 (43%), Gaps = 82/654 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
DG S DL+ L ++K + +++ +P E E+ LQ V Y+ +V G
Sbjct: 260 DGASRGEDDLTYK-LADIIKANQNLKNHVDDSPAHIIAEYEAL-LQYHVVTYMNNDVSGI 317
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++++ S P + +A L+ ++R + K FS+R+VITGD ++E+
Sbjct: 318 PQATQK-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEV 370
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
GVP IA+ +TF E V N LQE VDN + Y +R+ R G +
Sbjct: 371 GVPRTIAKTLTFPEIVTPFNFQQLQEAVDNG---PNEHPGARYVIRQNGDRIDLSRAGAI 427
Query: 336 ---------VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
V R I DGD V NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 428 ELQLNVGDKVERHIRDGDIVLFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADF 487
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS KAE+ E+ V +Q++S + + D L ++ K+ FL
Sbjct: 488 DGDEMNLHVPQSYETKAELSEICMVPRQIVSPQANRPVMGIVQDTLCGVRKFTKRDSFLT 547
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------------- 489
K L M+ LP+PA+ K WT QI ++PPG +
Sbjct: 548 KEMVMSLCMWVRDWDGQLPQPAIIKP--VPLWTGKQIFSLIIPPGTNMIGYHSQHPDNES 605
Query: 490 ---SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
S GD + +I E++ G + T+ + N ++ I+ E GPE+ FFD Q ++
Sbjct: 606 SDISPGDTKVVIYDGELVCGIICKKTVGTSQNSLIHVIWKEHGPEKTRNFFDGCQAVVNN 665
Query: 546 NLFADGFSVSLED-------FSLSKAALWNIQKEIQALYSLLYHRM------STQNELVD 592
LF+ GFS+ + D + + N + ++ S + + T E +
Sbjct: 666 WLFSYGFSIGIGDTIADAQTMQVVATTISNAKNKVTEYISQAHRNVLQPSPGMTIQESFE 725
Query: 593 LQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
++ + + + KS + + ++ + S + + Q +G Q + +
Sbjct: 726 SRVNQELNRARDIAGASAQKSLNDANNVKQMVVAGSKGSFINISQMTACVGQQNVEGRRI 785
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF + D P ++ G ++ + GL P E H++ RE ++
Sbjct: 786 PFGFKYRTL-----PHFTK----DDQSPESR-GFVENSYLRGLTPSELFFHAMGGREGLI 835
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
++ +E G + + L+ L DV + YD +VRN ++QF Y + S+
Sbjct: 836 DTAVKTAETGYIQRRLVKALEDVSVGYDCSVRNALGQ-VLQFAYGEDGMDGTSM 888
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 185/700 (26%), Positives = 299/700 (42%), Gaps = 89/700 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P+ G + +Y+P PP + P ++ +T D++I + + V I +
Sbjct: 235 GMDPEKGRPENLLWQYMPAPPVTIR-PTVAQEGATTEDDITIKLTEIVWTSSLIRAALNK 293
Query: 192 GTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLF 251
GTP S + LQL+V Y+ D+ P+ T+ + ++++
Sbjct: 294 GTP-INSLMEQWEFLQLSVALYINSELPGLRPPDM---------PSKPTRGFCQRLKGKQ 343
Query: 252 IR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
R K FS R+VI+ D +++++ VP IA+ +T+ E+V NI+ L+ V
Sbjct: 344 GRFRGNLSGKRVDFSGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVT 403
Query: 305 NKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTH 355
N + D LR G++ L G V R + D D V NR P+ H
Sbjct: 404 NGPDVHPGANYVVDRDTGIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPSLH 463
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ A V V T++ N +CGP +ADFDGD ++L PQ+ A+ E LEL ++ L
Sbjct: 464 KLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIKNNL 523
Query: 416 LSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
++ NG + D + + ++ K FLD+ L F + +P PA+ K R
Sbjct: 524 VTPRNGEPIIAATQDFITASYLLSLKDCFLDRKTFCNLCCFMVDASVHIDIPPPAILKPR 583
Query: 470 CSARWTALQILQSVLPPGFDS-----------------C-------GDRY-LIKKSEVLK 504
C WT Q+ ++ P S C D Y LI+ SE+L
Sbjct: 584 C--LWTGKQLFGVLMRPNHLSPVMVNLAANTRSIAKGKCSPPEMCPNDGYLLIQNSELLA 641
Query: 505 GDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G D+ + N + I + GP E + L L L GFS+ + D +
Sbjct: 642 GVVDKSIVGDGKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDVQPGQ 701
Query: 564 AALWNIQKEIQALYS------LLYHRMS-------TQNELVDLQIENHIRHVKMLVAKFI 610
+ ++ YS + Y + + Q ++ +I + + V+ V +
Sbjct: 702 RLYHTKEALVEKAYSVSDDLIMQYAKGTLECQPGMNQEATLESKISSTLSKVRDDVGETC 761
Query: 611 LK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+K S LI + S SK V Q +G Q+ GK + HF +
Sbjct: 762 MKELGSRNAPLIMATCGSKGSKINVSQMVACVGQQIIS-GKRVPDGFQDRSLPHFRK--- 817
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +P AK G + F+ GL P E + H+IS RE +V ++ +E G + + LM L D
Sbjct: 818 -NSKHPLAK-GFVSNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 875
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVG 766
+ YDGTVR+ ++SI+QF Y + L G PV
Sbjct: 876 LTSAYDGTVRS-SNSSIVQFTYGDDGLDPTYLEGDGTPVA 914
>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
Length = 984
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 149/537 (27%), Positives = 244/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 252 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 311
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ S
Sbjct: 312 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLALES 371
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 372 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 431
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ FL K + ++ +P+PA+ K A W
Sbjct: 432 QRNGPLMGIVQDTLCGIYKMCRRDVFLIKEQVMNILLWVPDWDGVIPQPAIVKP--LAMW 489
Query: 475 TALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QIL V+P G + D LI E++ G ++ T+ + ++ +
Sbjct: 490 TGKQILSLVIPTGLNLLRGTEEGFSPLNDDGLLISGGELMYGLLNKKTVGASGGGVIHIV 549
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QALYSLLY 581
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + Q +
Sbjct: 550 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVMEI 609
Query: 582 HRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + KS ++ Q A G G
Sbjct: 610 TRSATENELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKG 669
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 670 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 729
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + ++QF Y
Sbjct: 730 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFVYG 785
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 182/698 (26%), Positives = 312/698 (44%), Gaps = 71/698 (10%)
Query: 103 NDG--VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI 160
NDG QR+LS+ E+ + K I E +L F + +++ + P P I
Sbjct: 192 NDGDEPEQRVLSTE-EILNIFKHISPEDSTRLGFNEEFARPEWMILNVLPVPPPPVRPSI 250
Query: 161 SDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
S S D L +LK + + +G P+ +E ES LQ V Y++ +
Sbjct: 251 SFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIA 309
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VI+GD ++
Sbjct: 310 GQPQALQK-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD 362
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
++GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 363 QVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAG 422
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I D D V NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 423 DIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADF 482
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L +V Q++S+ + + + D L + K+ + FL+
Sbjct: 483 DGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 542
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC---- 491
F + L M P +P PA+ K + W+ Q+L +P G FD
Sbjct: 543 --FDEVLNMLYWVPDWDGVIPTPAIIKPK--PLWSGKQVLSIAIPRGIHLQRFDEGTTLL 598
Query: 492 ---GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPL----LM 544
+ L+ +++ G D+ T+ S ++ + EKGP + F ++Q + L+
Sbjct: 599 SPKDNGMLVVDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPTICAKLFGNIQKVVNFWLL 658
Query: 545 ENLFADGFSVSLEDFSL----------SKAALWNIQKEIQALYSLLYHRMSTQNELVD-- 592
N F+ G ++ D S +K + ++ KE Q+ H M+ + D
Sbjct: 659 HNGFSTGIGDTIADGSTIKEITETIADAKRKVEDVTKEAQSNLLTAKHGMTLRESFEDNV 718
Query: 593 LQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
++ N R +A+ L + + ++ + S + + Q + +G Q S GK
Sbjct: 719 VRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGY 777
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
V+ HF + +Y G ++ + GL P E H++ RE ++ ++ +
Sbjct: 778 GFVDRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 832
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L D+++ YDGT RN N +IQF Y
Sbjct: 833 ETGYIQRRLVKALEDIMVHYDGTARNSLGN-VIQFIYG 869
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 170/641 (26%), Positives = 285/641 (44%), Gaps = 71/641 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQEVESNDLQLAVGQYL--EVRG 218
DG S DL+ L +LK + +R S G+P E ES LQ Y+ E+ G
Sbjct: 204 DGTSRGEDDLT-HKLADILKANQNLRRYESDGSPAHVVSEFESL-LQFHCATYMDNEMAG 261
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ + S P + +A L+ ++R + K FS+R+VITGD V+E
Sbjct: 262 QPQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDE 314
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKGHT 328
+GVP IA +TF E V N++ LQELV N + D L+ S +
Sbjct: 315 VGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNV 374
Query: 329 F-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R I +GD + NR P+ HK S+ V V T ++N + P +ADFD
Sbjct: 375 VRLQNGWKVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFD 434
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
GD +++ PQS+ KAE+ E+ V KQ++S + + + D L +++ K+ FL K
Sbjct: 435 GDEMNMHVPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Query: 447 AFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRY-------- 495
+ M+ +P P + K WT QIL ++P G +S R+
Sbjct: 495 DLVMNILMWVKDWDGKIPIPCILKP--IPLWTGKQILSMIIPKGINSXNLRHSTHPDGEN 552
Query: 496 ----------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
LI+ E+L G + T+ + ++ I E GP +F + Q ++
Sbjct: 553 TDMSPGDTKVLIEDGELLCGIVCKKTVGTAQQGLIHVIMQELGPNRAKDFLNGCQAVVNY 612
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQ-----NELVD 592
L +GFS+ + D K + +I + I + + S +++ Q E +
Sbjct: 613 WLLQNGFSIGIGDTIADKDTMDSITQTINNAKERVKEVILSAQQNKLECQPGMTIRESFE 672
Query: 593 LQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
Q+ + + + KS + + ++ + S + + Q +G Q + GK
Sbjct: 673 NQVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVG-QQNVEGKR 731
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
HF + D + P ++ G ++ + GL P E H++ RE ++ ++
Sbjct: 732 IPYGFKFRTLPHFTK----DDHSPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 786
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 787 KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-ILQFCYG 826
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 179/691 (25%), Positives = 304/691 (43%), Gaps = 78/691 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V + KRI +E + + G P+ D + + +LPVPP + + V DL
Sbjct: 120 QVYNIFKRISDEDCRHM---GLDPRWARPDWFCITHLPVPPAAVRPGIAMNSVQRAEDDL 176
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSS-RDVDA 228
+ ++ V ++ ++ ++ P E+ + LQ + Y+ E+ G + R A
Sbjct: 177 TSKLMDIVRANAQLRKNEQNAAPAHHINELVTQ-LQYHIATYMDNELPGIPPAQQRSGRA 235
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
+ Q K ++R + K FS+R+VIT D ++++GVP IA +T
Sbjct: 236 LKSICQ----RLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPRSIALNLTTP 291
Query: 289 ERVNVHNINYLQELV-------DNKLCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRI 340
E V +N++ + +L+ + SDG+ + LR K L PG V R I
Sbjct: 292 EIVTPYNMDRMYQLIRAGPTEYPGARYIIRSDGTR-FDLRYVRKASDLHLEPGYRVERHI 350
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR P+ HK S+ A + V T ++N + P +ADFDGD ++L PQS
Sbjct: 351 QDGDYVLFNRQPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSFE 410
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFALS- 458
+AE E+ +V +Q++S + + + D L+ S K+ + F++K + M S
Sbjct: 411 TRAEASEIIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNIVMHLDSF 470
Query: 459 --PLPRPALSKARCSARWTALQILQSVLP-----------PGFDSC----GDRYL-IKKS 500
LP PA+ K+ RWT Q+ + LP P +S GD + I+
Sbjct: 471 DGRLPIPAIVKSPKGPRWTGKQLFSTFLPNVNVVRFHSTHPDGESTDISPGDTQVRIENG 530
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E+L G + T+ + ++ I E GP+ FF+ Q ++ L GFSV + D
Sbjct: 531 ELLCGIVCKRTLGTSAGSLIHVIMNEHGPDTARVFFNMTQKVINNWLINVGFSVGIGDTI 590
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRHVKM 604
+ +I ++ A + + Q ++LQ I N R
Sbjct: 591 ADDRTMESINSTLKKAKEEVDTVVIEAQQGKMELQPGRSFIESFESKVNRILNQARDAAG 650
Query: 605 LVAKFIL-KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIA 658
A+ L +S+ + ++ S S + + Q +G Q + GK F ++TL
Sbjct: 651 KTAQGSLQRSNNVKTMLTSGSKGSFINISQMFACVGQQ-NVEGKRIPFGFRNRTL----- 704
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G + +
Sbjct: 705 PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 759
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ + DV++ YD T RN IIQF Y
Sbjct: 760 RLIKAMEDVMVQYDNTTRN-SMGEIIQFLYG 789
>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1394
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 189/761 (24%), Positives = 314/761 (41%), Gaps = 114/761 (14%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D IL +PVPP C+ +S+ + + D L +++ ++I+ R+ +
Sbjct: 247 PED-LILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLNDVIQRHRASGAKMQM 305
Query: 199 QEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR----- 253
+ + LQL Y+ + ++ P T+ ++++++ R
Sbjct: 306 IMEDWDFLQLQCALYVNSETSG---------IPLNMQPKKPTRGFVQRLKGKHGRFRGNL 356
Query: 254 --KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL---- 307
K FS R+VI+ D R++++GVP +A+ +T+ ERV HN+ ++ LV N
Sbjct: 357 SGKRVDFSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHP 416
Query: 308 ---CLTYSDGSSSYSLREGSKG--HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
L D LR G++ LRPG VV R + DGD V NR P+ HK S+ A
Sbjct: 417 GANFLESRDSGFKRYLRYGNRDLLAQQLRPGDVVERHLRDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ A+AE L L L++ NG
Sbjct: 477 LAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGTRANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--------PLPRPALSKARCSAR 473
+ D + ++ ++ F D+A QLA + L+ LP PA+ K C
Sbjct: 537 PLIAAIQDFITGGYLLTQRDVFFDRAKAAQLAAYMLAGKDVSISVELPPPAIRKPVCL-- 594
Query: 474 WTALQILQSVLPP-------------------GFDSCG-DRY-LIKKSEVLKGDFDRDTI 512
WT QI ++ P G + C D Y LI+ SE+L G D+ T+
Sbjct: 595 WTGKQIFSLIIRPSRSCPVLASLRAKGKSYTSGEEMCANDAYVLIRNSELLSGTMDKGTM 654
Query: 513 PS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQK 571
S N I + + G + + L + + GFS+ + D + L
Sbjct: 655 GSGSKNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFSIGIGDVTPGAGLLKAKHD 714
Query: 572 EIQALYS--------LLYHRMSTQN--------ELVDLQIENHIR-HVKMLVAKFILKSS 614
+ Y+ L ++ Q E V L+ + +R H + + K++
Sbjct: 715 LVSEGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVSLKELSVVRDHAGKACLRELHKTN 774
Query: 615 TLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
+ + S + + Q +G Q + G + HFER + P A
Sbjct: 775 SPLIMAVCGSKGSFINISQMIACVG-QQAISGHRVPNGFEDRSLPHFER----NDRTPQA 829
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
+ G ++ F+ GL P E H++ RE +V ++ +E G + + L+ L D+ YD T
Sbjct: 830 R-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDMT 888
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWEL 794
VRN C + I+QF Y A + PA + D+ EL
Sbjct: 889 VRNSCGD-IVQFCY--------------------GADGLDPPAMEGKDDTPVDFGRVMEL 927
Query: 795 MKEILLCRVSFNNDPIDRRVILYLND--------CGCGRKY 827
+ CR P+D+ IL + + GCG +
Sbjct: 928 TRARKPCR---GEKPLDQDAILRIGEEVLGGKSYEGCGESF 965
>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1400
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 192/722 (26%), Positives = 308/722 (42%), Gaps = 92/722 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ KRI +E + L G P G YI +Y+ VPP C+ DG S DL
Sbjct: 215 KVLDLFKRISDEDCELL---GLRPAHGRPEEYIWQYISVPPVCIRPSVAQDGASN-EDDL 270
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E LQL+V Y+ E+ G R
Sbjct: 271 TVKLTEIVFTNALIKQGLSKGAPTAQFME-HWEFLQLSVAMYINSELPGVPSQPGQKPMR 329
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
V + K + R K FS R+VI+ D R++E+ VP +A+ +T+ E
Sbjct: 330 GFVQR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPE 384
Query: 290 RVNVHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHTF--LRPGQVVHRR 339
RV HNI L++ V N C + + GSS + L+ G++ LR G V R
Sbjct: 385 RVTPHNIEGLKQAVRNG-CDVHPGANYVTAGSSGFKKFLKFGNRNAVADTLRVGDTVERH 443
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I++GD V NR P+ HK S+ + + ++N +CGP +ADFDGD ++L PQ+
Sbjct: 444 IINGDIVLFNRQPSLHKLSIMCHRARIRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTE 503
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFAL 457
A+ E LEL SV+ L++ NG + D + + ++ +K +F ++FTQ FA
Sbjct: 504 EARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFTQICCYFAD 563
Query: 458 SPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C------------- 491
+ + P PA+ K WT QI ++ P DS C
Sbjct: 564 ADMQIDIPPPAIWKP--VRLWTGKQIFNVLMRPNKDSKVFVNVESKCNKPQEPKAEFYPR 621
Query: 492 ---------GDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQ 540
D +L I SE++ G D+ T+ S + I I + GP E + L
Sbjct: 622 MKPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRLA 681
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQ 587
L L GFS+ + D + ++ Y+ ++ Q
Sbjct: 682 KLCARWLANFGFSLGINDVIPGPILAAKKDELVEKAYADCLDLIAQAKKGKLENKPGCNQ 741
Query: 588 NELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLS 643
+ ++ I + + V+ V + +K S LI + S +V V Q +G Q+
Sbjct: 742 EQTLEALISSVLSKVRDAVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQII 801
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL E + H+IS RE +
Sbjct: 802 -AGHRVPDGFQDRSLPHF----PKKSKEPPSK-GFVRNSFYSGLRATEFLFHAISGREGL 855
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGE 763
V ++ +E G + + LM L D+ YD +VRN + ++QF Y + L +
Sbjct: 856 VDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRN-STGGVVQFTYGDDGLDPACLEGDAQ 914
Query: 764 PV 765
P+
Sbjct: 915 PI 916
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 166/629 (26%), Positives = 275/629 (43%), Gaps = 70/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 273 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 331
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 332 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 384
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + +DG+ L G V
Sbjct: 385 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKV 444
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 445 ERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 504
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
Q+ +AEV EL V ++S + + D+L + K+ + F+DK + ++
Sbjct: 505 QTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLW 564
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLP-------PGFDS----CGDRYLIKKSE 501
+ +P+PA+ K R RWT Q++ V+P P DS LI+ E
Sbjct: 565 VPNWDGVIPQPAILKPR--PRWTGKQLISMVIPQEISLHAPEGDSDIPLKDTGLLIQSGE 622
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+L G + + + I+ + E GP+ + F + +Q ++ L G S+ + D
Sbjct: 623 LLYGLLKKKNVGAAAGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIGDTVP 682
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HVKM 604
K + IQ I Q +T NEL V EN +
Sbjct: 683 DKQTIEKIQVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGT 742
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASH 660
K + S+ + +S S + + Q +G Q+ + + F +TL H
Sbjct: 743 TTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PH 797
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 798 FTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 852
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+ YDGTVRN + I+QF Y
Sbjct: 853 VKALEDLSARYDGTVRNSLGD-IVQFLYG 880
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMDESRTKPRDGGLNDPLLGSIDRGFKCKTC-TQS 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I ++K
Sbjct: 76 MSDCPGHFGHIELAKPVYHPGFIKKVK 102
>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Megachile rotundata]
Length = 2015
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 185/697 (26%), Positives = 305/697 (43%), Gaps = 75/697 (10%)
Query: 117 VKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
V+ +L++IPE L + P+D IL +PVPP C+ +SD + + D
Sbjct: 857 VQSILEKIPESDIPLLMMNPECALPKD-LILTRIPVPPICIRPSVVSDLKAGTTEDHLTM 915
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
L +++ ++I+ R + + LQL Y+ E+ G + + + G+
Sbjct: 916 KLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGL 975
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q K + R K FSSR+VI+ D R+ ++GVP +A+ +T+ ERVN
Sbjct: 976 VQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVN 1031
Query: 293 VHNINYLQELVDNKLCLT-----YSDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMDG 343
NI +++LV N + G + + LR G++ L+ G +V R + D
Sbjct: 1032 PSNIELMRKLVRNGPDVHPGANFIQQGKTQFKKYLRYGNRQKIAQDLQYGDIVERHLRDD 1091
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ HK S+ A V + T + N +C P +ADFDGD ++L PQ+ A+A
Sbjct: 1092 DVVLFNRQPSLHKLSIMAHKAKVLEHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARA 1151
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---- 458
E L L + L++ NG L + D + ++ +K FL+K+ QLA L+
Sbjct: 1152 EALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKSQASQLAGCLLAGLDI 1211
Query: 459 ----PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY----------- 495
LP PA+ K + WT QI +L P + G Y
Sbjct: 1212 AMSIDLPEPAILKP--TVLWTGKQIFSLILKPNKMCNIRANLKTKGRAYTTNEELCINDS 1269
Query: 496 --LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV-LEFFDSLQPLLMENLFADGF 552
+I+ SE+L G D+ T+ S + + I E++ L + L GF
Sbjct: 1270 YVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATTAMWRLARMASFFLMNRGF 1329
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSL---LYHRMS----------TQNELVDLQIENHI 599
S+ + D + + L Q+ + A YS H+M T+ E ++ I +
Sbjct: 1330 SIGIGDVTPGQGLLKAKQELLHAGYSKCTEYIHQMEEGRLVCQPGCTEEETLEAMILKEL 1389
Query: 600 RHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
++ K LK S++ + S S + + Q +G Q + G +
Sbjct: 1390 SVIRDHAGKACLKELHPSNSPLVMALSGSKGSFINISQMIACVG-QQAISGHRVPNGFED 1448
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HFER + P AK G ++ F+ GL P E H++ RE +V ++ +E G
Sbjct: 1449 RALPHFERHSKI----PAAK-GFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGY 1503
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+ + L+ L D+ + YD TVRN + I+Q Y +A
Sbjct: 1504 MQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYGGDA 1539
>gi|429851154|gb|ELA26368.1| DNA-directed RNA polymerase iii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1456
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 179/700 (25%), Positives = 296/700 (42%), Gaps = 91/700 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 252 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 310
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQL V Y L+ G K+ R R Q
Sbjct: 311 GSP-IQTIMEQWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV+ +NI L+E V
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIKKLKECVR 419
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + DG SLR G++ L+ G VV R + D D V NR P+
Sbjct: 420 NGPNIWPGAQQVIKNDDGGYKISLRFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSL 479
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 480 HKLSIMSHLVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHN 539
Query: 415 LLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + NG + D + + ++ K F D+ + M + LP PA+ K
Sbjct: 540 LATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYICMHMMDGNVHLDLPPPAILKP 599
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ A WT Q+ ++ P DS C D +++ SEV+
Sbjct: 600 Q--ALWTGKQVFSIMMRPNKDSPVKVNLDAKCREYKARPGQCPDMDPNDGWLVVRNSEVM 657
Query: 504 KGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
G D+ T+ S + V + GP+ + + L L +L GFS+ + D +
Sbjct: 658 CGRMDKSTVGSGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGVGDVFPT 717
Query: 563 KAALWNIQKEIQALY-------------SLLYHRMSTQNELVDLQIENHIRHVKMLVAKF 609
+ L K IQ L + E ++ I + V+
Sbjct: 718 QLLLEKKSKMIQDANKDVDELIDKYKKGKLEKATGCSMEETLENSISGLLSKVRTQAGSH 777
Query: 610 ILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
++ S L+ +KS S S+ V Q +G Q+ GK + + HF +
Sbjct: 778 CIETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIG-GKRVADGFQDRTLPHFHKNA 836
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
P P +K G + F+ GL P E + H++S RE +V ++ +E G + + LM L
Sbjct: 837 PQ----PPSK-GFVANSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLE 891
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
D+ YD TVR I+QF + + + + +PV
Sbjct: 892 DLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEASAKPV 930
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 1 MEENTSSTILEGQIV--------GIRFGLATQKEICTASISDCS-----------ISHAS 41
M T+ T ++ Q+V GI+FG+ + ++I ++ + S +
Sbjct: 1 MATTTTVTPVKSQLVDKLPKRFKGIKFGIQSNQDIANQAVLEVSDRLLYDIEKNRAPYQH 60
Query: 42 QLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQI 101
+P LG + GKC +C S C GHFG++ LP+P + HI L+ M Q
Sbjct: 61 GPLDPRLGTSSKTGKCATCQESLQ-NCTGHFGHVRLPLPAF---HIGYLRFVMMILQDIC 116
Query: 102 KNDGVAQRLLSSCCEVKEMLKRI 124
K+ G ++L + E + LK +
Sbjct: 117 KDCG---KVLLTESEKRAFLKEL 136
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|158298044|ref|XP_318130.4| AGAP004703-PA [Anopheles gambiae str. PEST]
gi|157014619|gb|EAA13195.5| AGAP004703-PA [Anopheles gambiae str. PEST]
Length = 1379
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 186/702 (26%), Positives = 302/702 (43%), Gaps = 83/702 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISD-GVSTMSSDLS 172
EV ++ + IP+ L + P D I+ + VPP C+ +S+ T DL+
Sbjct: 225 EVLDLFRNIPKSDVPLLGMTSTYSNPAD-LIVTRVFVPPVCIRPSVVSEVKAGTTEDDLT 283
Query: 173 IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ ++L ++I E + + + LQL Y E+ G S
Sbjct: 284 MKQ-SEILLISDVITKHMMTNGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTR 342
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G+ Q K + R K FS+R+VI+ D ++++GVP +A+ +TF E+
Sbjct: 343 GIVQ----RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPEK 398
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFL------------RPGQVVHR 338
VN NI +++L+ N T ++Y ++GS +L + G +V R
Sbjct: 399 VNSANITRMRQLIRNG---TEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVER 455
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
++DGD V NR P+ HK S+ V T + N C P +ADFDGD ++L PQ+
Sbjct: 456 HLIDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQT 515
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL 457
A+AE L L + L++ NG L + D + ++ +K FL QLA L
Sbjct: 516 EEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTLEQVMQLAACML 575
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC--------GDRY------ 495
S LPRPA+ K R WT QI +L P SC G Y
Sbjct: 576 SGPDSNMVIDLPRPAILKPR--KLWTGKQIFSLILKPNSQSCVNANLYTKGRNYTRDNDM 633
Query: 496 -------LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
+I+ S++L G D+ T+ S N I I + G E ++ L + +
Sbjct: 634 CVKDSWVIIRNSQLLCGAMDKGTLGSGTKNCIFYVILRDFGEEYAIKSMWRLARMASYFM 693
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALY-------------SLLYHRMSTQNELVDLQ 594
GFS + D + S+ L QK ++ Y +L T + ++
Sbjct: 694 MNHGFSFGIGDVTPSRKLLEEKQKLLENGYRKCDEYIAEMKKGTLQCQPGCTAEQTLEAV 753
Query: 595 IENHIRHVKMLVAKFILKS--STLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYS 650
+ + ++ L AK + T LI ++S S S + Q +G Q + GK
Sbjct: 754 MLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNINISQMIACVGQQAIN-GKRVP 812
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+ HFE+ + P A+ G ++ F+ GL P E H+++ RE +V ++
Sbjct: 813 NGFEDRALPHFEKFSKI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKT 867
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+E G L + L+ L D+V+ YDGTVRN +++F Y +
Sbjct: 868 AETGYLQRRLVKCLEDLVVQYDGTVRNAIG-EVVEFSYGADG 908
>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like, partial [Apis florea]
Length = 1994
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 184/699 (26%), Positives = 305/699 (43%), Gaps = 77/699 (11%)
Query: 116 EVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EV+ +L++IPE L + P+D IL +PVPP C+ +SD + + D
Sbjct: 850 EVQSILEKIPENDIPLLMMNTECALPKD-LILTRIPVPPICIRPSVVSDIKAGTTEDHLT 908
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
L +++ ++I+ R + + LQL Y+ E+ G + + + G
Sbjct: 909 MKLSEIVFINDVIQKHRQSGAKVQMYSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRG 968
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ Q K + R K FSSR+VI+ D R+ ++GVP +A+ +T+ E+V
Sbjct: 969 LVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKV 1024
Query: 292 NVHNINYLQELVDNKLCLT-----YSDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMD 342
N NI +++LV N + G + + LR G++ L+ G +V R + D
Sbjct: 1025 NPSNIELMRKLVRNGPDIHPGANFIQQGKTQFKKYLRYGNRQKIAQDLQYGDIVERHLRD 1084
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
D V NR P+ HK S+ A + D T + N +C P +ADFDGD ++L PQ+ A+
Sbjct: 1085 DDVVLFNRQPSLHKLSIMAHKAKILDHRTFRFNECVCTPYNADFDGDEMNLHVPQTEEAR 1144
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--- 458
AE L L + L++ NG L + D + ++ +K FL+K QLA L+
Sbjct: 1145 AEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKTQASQLAGCLLAGPD 1204
Query: 459 -----PLPRPALSKARCSARWTALQILQSVLPPGFDSC---------------------G 492
LP PA+ K + WT Q +L P ++C
Sbjct: 1205 ITMSINLPEPAILKP--TTLWTGKQXFSLILKPN-NTCNIKANLKTKGRAYTTNEELCIN 1261
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF-FDSLQPLLMENLFAD 550
D Y +I+ SE+L G D+ T+ S + + I E++ L + L
Sbjct: 1262 DSYVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNR 1321
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIEN 597
GFS+ + D + + L Q+ + A YS L+ T+ E ++ I
Sbjct: 1322 GFSIGIGDVTPGQGLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILK 1381
Query: 598 HIRHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ ++ K LK S++ + S S + + Q +G Q + G
Sbjct: 1382 ELSVIRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVG-QQAISGHRVPNGF 1440
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HFER + P AK G ++ F+ GL P E H++ RE +V ++ +E
Sbjct: 1441 EDRALPHFERHSKI----PAAK-GFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAET 1495
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
G + + L+ L D+ + YD TVRN + I+Q Y +A
Sbjct: 1496 GYMQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYGGDA 1533
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 168/626 (26%), Positives = 281/626 (44%), Gaps = 63/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVQRCDQEGAPAHVVNEFETL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLALDEVGVPRSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPEMVTPYNIHKLSELVRNGPDEHPGAKYVIRDTGERIDLRYHKRAGDIRLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIVDGDAVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS + E+ ++ V Q++S + + + D L ++ M + F+ T + M+
Sbjct: 306 QSEETRTELSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFIGYQETMNIMMW 365
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIKKS 500
+P PA+ K + WT QIL V+P G FD + LI+
Sbjct: 366 VPDWDGIIPPPAVLKPK--PLWTGKQILSMVIPKGINLQRFDEGTTLMNPKDNGMLIENG 423
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G D+ T+ + +V I EKGP +FF +Q ++ L +GFS+ + D
Sbjct: 424 EIMFGVVDKKTVGATAGGLVHIIMREKGPYICRDFFGGVQTVVNYWLLHNGFSIGIGDTI 483
Query: 561 LSKAALWNIQK-------EIQALYSLLYHRM------STQNELVDLQIE---NHIRHVKM 604
+ +I K ++Q L + H + T E + ++ N R
Sbjct: 484 ADADTMRHITKTIDEAKQQVQNLINEAQHNVLAPEPGMTLRESFEHKVSRALNQARDTAG 543
Query: 605 LVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK+ + + ++ + S + + Q + +G Q+ + GK + HF +
Sbjct: 544 RSAEMSLKNDNNVKQMVIAGSKGSFINISQMSACVGQQIVE-GKRIPFGFKDRTLPHFTK 602
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 603 D-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 657
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV + YD TVRN + IIQF Y
Sbjct: 658 LEDVSVEYDSTVRNSLGD-IIQFIYG 682
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 175/689 (25%), Positives = 298/689 (43%), Gaps = 80/689 (11%)
Query: 120 MLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI +E K L Y D IL+ LP+PP + + D S DL+ +
Sbjct: 220 ILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGV 232
+ + R R+G+P E + LQ + Y + R T +S R + +
Sbjct: 280 IRHNENLRRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC-- 336
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 337 -----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVT 391
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMD 342
+NI L+ELV+ + Y +R+ + L G V R + D
Sbjct: 392 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +
Sbjct: 452 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL----- 457
AEVLEL V K ++S + + + D LL + + K+ D T+ + M L
Sbjct: 512 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR---DTFITKDVFMNTLMWWED 568
Query: 458 --SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IK 498
+P PA+ K + WT Q+ ++P G + GD ++ I+
Sbjct: 569 FDGKIPAPAILKPQ--PLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIE 626
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
K E+L G + + + ++ I+ E GP+ +F Q L+ L + FS+ + D
Sbjct: 627 KGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 686
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMSTQNE----------LVDLQIENHIRHV------ 602
A + I + I A + + + + E ++D EN + V
Sbjct: 687 TIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMD-SFENKVNQVLNKARD 745
Query: 603 --KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + +S+ L ++ + S + + Q +G Q + GK ++ H
Sbjct: 746 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPH 804
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ SE G + + L
Sbjct: 805 FTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 859
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + D+++ YDGTVRN + +IQF Y
Sbjct: 860 VKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+ I H + L++P LG KCE+C T+
Sbjct: 18 VQFGILSPDEIRQMSV--VQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETC-TANMA 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG++EL P++H
Sbjct: 75 ECPGHFGHLELAKPMFH 91
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1409
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 195/734 (26%), Positives = 320/734 (43%), Gaps = 101/734 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R + Y+ +Y+ VPP C+ P ++ +T D+++ L +
Sbjct: 232 ELLGMNPKEARP----------EQYVWQYMHVPPVCIR-PSVAQDGATNEDDITVK-LGE 279
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDL-QLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
+++ +II+ S + SQ +E +L QLA Y+ E+ G R V +
Sbjct: 280 IVQTSQIIKMGMSSGKSTTSQLMEQWELLQLACAMYINAEMPGVPSDKATKPIRGFVQR- 338
Query: 236 PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
K + R K FS R+VI D VNE+ VP IA+ +T+ ERV HN
Sbjct: 339 ----LKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLSVNEVAVPQRIAKVLTYPERVFEHN 394
Query: 296 INYLQELVDNK------LCLTYSDGSSSYS--LREGSKGH--TFLRPGQVVHRRIMDGDT 345
I L++ V N + G + + L+ G++ LR G +V R + D D
Sbjct: 395 IESLRQAVRNGPDVHPGANYVQNGGVNGFKRFLKFGNREEIANRLRIGDIVERHLRDRDL 454
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
+ NR P+ H+ S+ V V T+++N C P +ADFDGD +++ PQ+ A+ E
Sbjct: 455 ILFNRQPSLHRLSIMCHYVKVRPWRTLRLNECACNPYNADFDGDEMNMHVPQTEEARTEA 514
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQLAMFALS----P 459
EL V+ +++ NG + D + + ++ KK Y LD+ F+Q ++ +
Sbjct: 515 QELMGVKHNMVTPRNGEPIIAAIQDFITAAYLLSKKDYLLDRQEFSQVVSYLDHANMHID 574
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD-------------------------SCGDR 494
LP PA+ K + WT QIL ++ P S D
Sbjct: 575 LPPPAILKPK--RMWTGKQILSILMRPNKSSPVLVNLEAKNRTNHPPPKGMLPDMSSNDG 632
Query: 495 YL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
YL I+ S+++ G FD+ T+ N + I + GP+E + + L + L + GF
Sbjct: 633 YLVIRNSQIMCGHFDKATVGDGKKNSVFGVILRDYGPDEAVNAMNRLARVCARWLASVGF 692
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-----------------TQNELVDLQI 595
S+ + D S +++K + L Y + Q + ++ I
Sbjct: 693 SLGISDVMPS----MDLRKRKEVLVEEAYAHCNDLIEKAKYGKLENQPGCDQEQTLESLI 748
Query: 596 ENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
+ V+ +V ++ S LI + S +V V Q +G Q+ GK
Sbjct: 749 SGILSKVRDVVGASCMEELSRYNAPLIMATCGSKGSVINVSQMVACVGQQIIS-GKRVPN 807
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
+ HF P P +K G ++ FF GL P E + H+IS RE +V ++ +
Sbjct: 808 GFQDRSLPHF----PKKAKDPPSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTA 862
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAAT 771
E G + + LM L D+ YD +VR S ++QF Y + SL G+PV L +
Sbjct: 863 ETGYMQRRLMKALEDLSAHYDRSVR-TSSGIVVQFLYGSDGLDPVSLEGDGQPVEFLRSW 921
Query: 772 AMSNPAYKAVLDSS 785
+ KA+LDSS
Sbjct: 922 KHT----KAILDSS 931
Score = 40.8 bits (94), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 55 GKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
G C++CG S +C GH+GYI+L +P++H + ++
Sbjct: 65 GSCDTCGESM-AECVGHYGYIKLALPVFHIGYFRDI 99
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 175/689 (25%), Positives = 300/689 (43%), Gaps = 72/689 (10%)
Query: 116 EVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V +LKRI +E L Y D IL+ LP+PP + + D S DL+
Sbjct: 134 KVLSVLKRISDEDCILLGLSPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQ 193
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDA 228
+ + + R ++G P E + LQ + Y + R T +S R + +
Sbjct: 194 LAMIIRHNENLRRQEKNGAPAHIISEF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKS 252
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+
Sbjct: 253 IC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYP 305
Query: 289 ERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHR 338
E V +NI+ L+ELV+ + Y +RE + L G V R
Sbjct: 306 ETVTPYNIDRLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVER 365
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+ DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS
Sbjct: 366 HLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 425
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL 457
+AEVLEL V K ++S + + + D LL + + K+ F++K + M+
Sbjct: 426 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 485
Query: 458 ---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFDSCGDRYL-I 497
+P PA+ K R WT Q+ ++P GF + GD + I
Sbjct: 486 DFDGKIPAPAVLKPR--PLWTGKQVFNLIIPKQINLLRTSAWHAESETGFITPGDTQVRI 543
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
++ E+L G + + + ++ I+ E GP+ +F Q L+ L + FS+ +
Sbjct: 544 ERGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 603
Query: 558 DFSLSKAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV------ 602
D A + I + E++ L + + + + EN + V
Sbjct: 604 DTIADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMMESFENRVNQVLNKARD 663
Query: 603 --KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + +S+ L ++ + S + + Q +G Q + GK + H
Sbjct: 664 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFINRTLPH 722
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D N P ++ G ++ + GL P E H++ RE ++ ++ SE G + + L
Sbjct: 723 FTQ----DDNGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 777
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + D+++ YDGTVRN + +IQF Y
Sbjct: 778 VKAMEDIMVKYDGTVRNSLGD-VIQFLYG 805
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 180/691 (26%), Positives = 306/691 (44%), Gaps = 69/691 (9%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
QR+L+ E+ + K I +E +L F + +++ + P P IS S
Sbjct: 199 QRILT-MEEILNIFKHISKEDSNRLGFNEEFARPEWMILTVLPVPPPPVRPSISFNESQR 257
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
D L +LK + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 258 GEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQ 316
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 317 K-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L LV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEVVTPYNIDRLTFLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L
Sbjct: 490 HVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE--LDQVL 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + WT QIL +P G FD +
Sbjct: 548 NMLYWVPDWDGVIPTPAIIKPK--PLWTGKQILSIAIPKGIHLQRFDEGTTLLSPKDNGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G D+ T+ S ++ + EKGP+ F ++Q ++ +GFS
Sbjct: 606 LIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARLFGNIQKVVNYWFLHNGFSTG 665
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
+ D + +K + ++ KE QA H M+ + D ++ N
Sbjct: 666 IGDTIADGQTMREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 725
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ LK + + ++ + S + + Q + +G Q S GK + V+
Sbjct: 726 RDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTL 784
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 785 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YD T RN N +IQF Y
Sbjct: 840 RLVKALEDIMVHYDSTTRNSLGN-VIQFVYG 869
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +E+ S++ + L +P LG KC++C G +E
Sbjct: 17 VQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK-----LTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
C GHFG+I+L P++H I+++K + M+ +L + + R C++K+
Sbjct: 77 ---CPGHFGHIDLAKPVFHIGFITKIKKVCECVCMHCGKLLLDDHNEQMR---QACKIKD 130
Query: 120 MLKR 123
KR
Sbjct: 131 SKKR 134
>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 151/542 (27%), Positives = 248/542 (45%), Gaps = 46/542 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ Y +RE + G L+ G V R I+DGD + NR P+ H
Sbjct: 330 G---PNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLH 386
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S V V T ++N + P +ADFDGD ++L PQS +A + +L V +
Sbjct: 387 KESTMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAGINQLCMVPLNI 446
Query: 416 LSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+S + + D L + K+ + FL K Q + + P LP+PA+ K R
Sbjct: 447 VSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSKE--QVMNILLWIPDWDGILPQPAILKPR 504
Query: 470 CSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTIPSVINE 518
+WT QI+ V+P G + D L+ +++ G + ++ + +
Sbjct: 505 --PKWTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSG 562
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--QAL 576
I+ IF EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ + Q
Sbjct: 563 IIHIIFNEKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIEDAVNKQKE 622
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA- 635
+ + +T NEL L N + V+K + K+ + KS ++ Q A
Sbjct: 623 DVAVITQSATANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMAL 682
Query: 636 -GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGL 687
G G + +S + VE F R P +Y G ++ + GL
Sbjct: 683 SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 742
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 743 TPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFV 801
Query: 748 YA 749
Y
Sbjct: 802 YG 803
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 164/628 (26%), Positives = 283/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R +G+P QE E+ LQ V Y++ + G ++ +
Sbjct: 261 DLTYKLGDILKANINVQRLEINGSPQHVIQESEAL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAR 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V +Q++S+ + + + D L ++ M + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P P + K + W+ QIL +P G FD + LI
Sbjct: 551 YWIPDWDGVIPTPIILKPK--PLWSGKQILSIAIPSGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ F +LQ ++ L +GFS+ + D
Sbjct: 609 DGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVNFWLLHNGFSIGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHIRHV 602
++K + + KE QA H M+ + D + N R
Sbjct: 669 TIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMTLRESFEDSVVRYLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ + S + + Q + +G Q S GK + + HF
Sbjct: 729 AGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N +IQF Y
Sbjct: 843 KALEDIMVHYDGTTRNSLGN-VIQFIYG 869
Score = 46.6 bits (109), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + +E+ S++ + L +P LG KC++CG
Sbjct: 17 VQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNYKCQTCGEGM-N 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H +IS++K
Sbjct: 76 DCPGHFGHIELAKPVFHIGYISKIK 100
>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
Length = 1040
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 195/796 (24%), Positives = 343/796 (43%), Gaps = 106/796 (13%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPDISDGV 164
V+QR+L++ E ++LK + E + L F + ++L LPVPP + P I G
Sbjct: 122 VSQRILTAE-EAHQVLKALTNEACEMLGFNPNFARPDWLLVTVLPVPPPAVR-PSIDMGG 179
Query: 165 STMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKS 222
S ++ DL+ L +L +++R N ++ LQ + +++ KS
Sbjct: 180 SGRAAQDDLTFK-LGDILSTNQLLRRQEEHGVNPQTLRNTEEMLQFHLFTFVDNELAGKS 238
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
+ + + +SQ K ++R + K FS+RSVIT D ++++GVP +IA
Sbjct: 239 GKVLKS---ISQ----RLKGKSGRIRNNLMGKRVDFSARSVITADPILEIDQVGVPVDIA 291
Query: 283 QRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP------GQVV 336
+ +T E V NI LQELV++ + G+ + +G++ P G V
Sbjct: 292 KIMTVPEVVTPFNIKRLQELVNHGPSV--HPGARFVFMEDGTRQDLEFSPNFPLAYGYTV 349
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R + D D V NR PT H+ + V T ++N + P +ADFDGD ++L P
Sbjct: 350 ERHLEDNDVVLFNRQPTLHRMGMMGHRVKTMKFKTFRLNLSVTSPYNADFDGDEMNLHAP 409
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QSL KAE+LEL + K ++S + + + L D+LL+ ++ + FL++ M+
Sbjct: 410 QSLLTKAELLELMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLERDHFMNCLMW 469
Query: 456 A---LSPLPRPALSKARCSARWTALQILQSVLPP---------------GFDSCGD-RYL 496
LP PA+ K + WT Q+ +LP S GD + +
Sbjct: 470 VDDFDGQLPMPAILKPK--PLWTGKQLFSQILPKVNLRLRSKDHPRSENTLVSPGDTQVI 527
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I++ E+L G ++T+ + +V ++ E+GPE +Q L+ L GFS+ +
Sbjct: 528 IEQGELLAGKCCKNTMGTSQGSLVHVVYTEQGPEVCARMMGQVQRLVNYWLLTVGFSIGI 587
Query: 557 EDFSLSKAALWNI-------QKEIQALYSLLYHRMSTQN------ELVDLQIENHIRHVK 603
D + + I +K++ + L+ R + E + + + + +
Sbjct: 588 GDCVPDEITMRTITEAITDDKKQVTGVIKELHKRKLEKKPGLTLLESFEAVVNDKLNQAR 647
Query: 604 MLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVE 655
L+S + ++ + S + Q +G Q + + F ++TL
Sbjct: 648 DKAGNAALESLSERNNFKNMVTAGSKGNELNISQVIACVGQQNVEGRRIPFGFRNRTL-- 705
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + NY G + + GL P E HS+ RE I+ ++ SE G
Sbjct: 706 ---PHFRQ-----ENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIIDTAVKTSETGY 757
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSN 775
+ + L+ + D+++ YDGTVR+ ++QF Y + S + +MS
Sbjct: 758 IQRRLVKAMEDIMVRYDGTVRD-ARGKVLQFVYGEDGLDSIRVESQN-----FELVSMSQ 811
Query: 776 PAYKAVLDSSP-------SSNNSWE-LMKEILLCRV----SFNNDPI------------- 810
A++ + + P SS +S+ L+ I++ R S NDP
Sbjct: 812 NAFRQLFEYPPHNHPLLSSSQSSFTVLLACIMVSRAQVIESLRNDPTKVDELVDEVEQLR 871
Query: 811 -DRRVILYLNDCGCGR 825
DRR + + G GR
Sbjct: 872 EDRRALARIFTSGEGR 887
>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
IFO 4308]
Length = 2146
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 180/695 (25%), Positives = 300/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 949 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 997
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 998 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 1054
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 1055 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 1112
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++G FL+ G V+ R I DGD
Sbjct: 1113 KLQQRVRNG---TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQEGDVIERHIEDGDI 1169
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 1170 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 1229
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 1230 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFD 1289
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 1290 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACREFKAPKDGTPRDLDPKDA 1347
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I + GP E + L L GF
Sbjct: 1348 WLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGF 1407
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S+ L + ++ Y+ + ++ T + + ++ Q+ +
Sbjct: 1408 SIGITDVYPSEKLLRSKHNLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 1467
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 1468 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 1525
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G
Sbjct: 1526 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETG 1580
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S +I+QF Y
Sbjct: 1581 YMSRRLMKSLEDLSTRYDDTVRN-SSAAIVQFQYG 1614
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 303/703 (43%), Gaps = 79/703 (11%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSV 157
K D RLL ++E L IP++ L GY P+ ++L+ LPVPP +
Sbjct: 169 KTDAGENRLLP--ITIRERLSHIPDDDLTLL---GYDPRTARPEWFVLQVLPVPPVTVRP 223
Query: 158 PDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--E 215
I + DL+ ++ + + S +GTP Q++ + LQ V Y E
Sbjct: 224 SIILETGIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQDL-VDLLQYHVTTYFDNE 282
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKR 271
V G ++ S P T L+ F SG FSSR+VI+ D
Sbjct: 283 VSGIPQAHHR-------SGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLT 335
Query: 272 VNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSKGH--- 327
+ ++GVP ++A+++T E V+ N+ L+ELV N TY ++Y +R +G K
Sbjct: 336 IADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPN-TYP--GANYIIRPDGVKIRLDY 392
Query: 328 --------TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 379
L PG +V R + DGD V NR P+ H+ S+ A SV V T +++P +C
Sbjct: 393 VTDRKAIADSLAPGYIVERHLADGDIVIFNRQPSLHRMSIMAHSVKVLPYRTFRLHPAVC 452
Query: 380 GPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF 439
P +ADFDGD ++L PQS A+AE L V+ QL+S G + D + ++
Sbjct: 453 PPYNADFDGDEMNLHVPQSEEARAEATLLMRVQDQLISPRYGGPIIGGIRDFITGAFMLT 512
Query: 440 KK-YFLDKAFTQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFDSC----- 491
+ L K LAM PLP PA++K ++ Q+ LP F+
Sbjct: 513 RDGTTLTKDEFANLAMIGGYEGPLPEPAITKD-GQRLYSGRQLFSLFLPKDFNFIITSKW 571
Query: 492 -------GDRYLIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
G +IK E++ G D+ +I + + ++ I + G +F DS+ +L
Sbjct: 572 NKAAKGEGKDVVIKNGELISGVIDKASIGAEEPDSVLHRIAKDYGTNAARKFLDSILTML 631
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQN-------------EL 590
+ GF+ D LS I IQ Y +Y + N E
Sbjct: 632 KTYITHRGFTYGYSDLWLSPETRQEINDIIQKTYEKVYELIQQYNDGTLPLTRGLAAEEA 691
Query: 591 VDLQIENHI---RHVKMLVAKFILKSSTLGYLIDSK-SDSAVSKVVQQAGFLGLQLSDRG 646
++L + N + R A G ++ S + + + Q LG Q S RG
Sbjct: 692 LELYVVNELSRARDRAGRTADRAFPDENSGVIMASTGARGSTLNIGQMTAALG-QQSIRG 750
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K K SHF+ P D N P AK G +K + GL P E H++ RE +V +
Sbjct: 751 KRIQKGYHNRALSHFK---PNDAN-PDAK-GFVKSNYRDGLSPLEFFFHAMGGREGLVDT 805
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + G + + L+ L + I YD TVR+ N I+Q+ Y
Sbjct: 806 AVRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGN-IVQYLYG 847
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPSGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ +K + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNMKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ Q+L +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQVLSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger
CBS 513.88]
gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
Length = 1450
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 180/695 (25%), Positives = 300/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++G FL+ G V+ R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQEGDVIERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACRQFKAPKDGTPRDLDPKDS 651
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I + GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S+ L + ++ Y+ + ++ T + + ++ Q+ +
Sbjct: 712 SIGITDVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 771
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S +I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSTRYDDTVRN-SSAAIVQFQYG 918
>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
Length = 1828
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 183/698 (26%), Positives = 306/698 (43%), Gaps = 71/698 (10%)
Query: 113 SCCEVKEMLKRI-PEETRKKLAGKGY--FPQDGYILEYLPVPPNCLSVPDISDGVSTMSS 169
S VK++ ++I PE+ R G Y + IL +PVPP + P + G +T S
Sbjct: 190 SPSSVKDLFRKISPEDCR--FMGFNYPEIKPEYMILSEIPVPPLAVRPPVMLPGSTTPSE 247
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
D L +LK + I R F + D L + Q ++V
Sbjct: 248 DDITYALSNILKANKAISGDR-----FRGKGRNGMDDDLEMLQTYYSNYCDNERKNVPQA 302
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
++ P T + ++ ++R + K FS RSVIT D ++E+GVP +A +
Sbjct: 303 IQKNKRPLKTFRQRIKGKTGRVRGNLMGKRVNFSGRSVITADPTIDIDEVGVPKSLAAIL 362
Query: 286 TFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRR 339
TF ERV +NI L++LV+ + + DG Y LR + G L+ G +V R
Sbjct: 363 TFPERVTRYNIKELEKLVNQRDKWPGAKYIIDLDGRR-YDLRY-TNGIPQLKEGMIVERH 420
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I +GD V NR P+ HK S+ V V + T ++N P +ADFDGD +++ PQ++
Sbjct: 421 INNGDIVLFNRQPSLHKMSIMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNIHVPQTV 480
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA-- 456
A+AEV EL V K ++S + + + D LL S K+ + F+ K + M+
Sbjct: 481 QARAEVTELMMVHKNIISPKSNGPVMGIVQDTLLGSQKLTQRDTFVAKDMMMNMVMWVDD 540
Query: 457 -LSPLPRPALSK---ARCSARWTALQILQSVLPPG-----FDSCGDR------------Y 495
+P PA++ + WT Q+ +LP F + D+
Sbjct: 541 FDGNIPIPAVTAHKDGKLVPLWTGKQMYSLILPKDLNIQRFSTPYDKNKKVPLNMMDCEV 600
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGFSV 554
LI++ E+L G D+++I + + +T + ++GP+ F Q ++ L GFSV
Sbjct: 601 LIEEGELLMGIIDKNSIGNTKSGGITHVLMNDRGPDAAKAFLGLNQRMVNYWLMNRGFSV 660
Query: 555 SLEDFSLSKAALWN----IQKEIQALYSLLYHRMSTQNEL-------------VDLQIEN 597
L D + + I K + + SL+ Q E V+ ++
Sbjct: 661 GLGDMVPTPETMNEVMDLIAKAKRKVTSLIQQGQHKQLEKQPGKTIEQYFEWSVNSELNT 720
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ + K + ++L + + S A + Q +G +G Q D GK + +
Sbjct: 721 MANQTQKTIMKHLKSDNSLQAMAVAGSKGAPLNLQQISGCVGQQNVD-GKRIAYGFMYRT 779
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + DL +G + + GL P E H++ RE I+ ++ S+ G +
Sbjct: 780 LPHFCKD---DLG--ADAHGFVVNSYLKGLTPQEFYFHAMGGREGIIDTAVKTSKTGYIQ 834
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS 755
+ L+ + D+++ YDGTVRN I+QF Y + S
Sbjct: 835 RRLIKSMEDLMVYYDGTVRN-SRGQIVQFLYGEDGMDS 871
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 269/629 (42%), Gaps = 86/629 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSS 223
DL+ + + + + R + G+P +E ES LQ V Y++ + KS+
Sbjct: 277 DLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESL-LQYHVATYMDNDIAGIPQAMQKSN 335
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 336 RPVKAIRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQ 388
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NI+ L +LVDN + + S +G G FL+ G
Sbjct: 389 TLTYPEVVTPYNIHRLGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWK 448
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P+ HK S+ + V V T ++N + P +ADFDGD ++L
Sbjct: 449 VERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 508
Query: 396 PQSLAAKAEVLELFSVEKQLLSSH-NGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S NG L + ++ F+
Sbjct: 509 PQSEEARAELNQLCLVPLNIVSPQRNGPL-----------MGAGYECSFMGS-------- 549
Query: 455 FALSPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-RYLI 497
L PA+ K R RW+ Q++ VLP G F D L+
Sbjct: 550 -GLGWCSSPAILKPR--PRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLV 606
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G F + T+ + +V +IF E GP+ + FF+ Q ++ L +GFS+ +
Sbjct: 607 HGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIG 666
Query: 558 DFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIENHIR 600
D + I+ ++ + +T+N L V + N
Sbjct: 667 DTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNNARD 726
Query: 601 HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + S+ + S S + + Q +G Q S GK H
Sbjct: 727 EAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPH 785
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 786 FTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKL 840
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L +V++ YDGTVRN + I+QF Y
Sbjct: 841 VKALEEVMVKYDGTVRNSLGD-IVQFLYG 868
>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
Length = 872
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 164/628 (26%), Positives = 289/628 (46%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANGNVQRCEQDGAPAHVINEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPYNIHRLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I DGD V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIDDGDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V Q++S + + + D L ++ + K+ F++ F Q + +
Sbjct: 306 QSEETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVE--FDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P+PA+ K + WT Q++ +P G FD + LI
Sbjct: 364 FWIPDWDGVVPQPAILKPK--PLWTGKQMVSLCIPKGIFMQRFDDQNPITSPKDNGMLIA 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
K E++ G D+ T+ + ++ +I EKGP+ FF +LQ ++ L +GFS+ + D
Sbjct: 422 KGEIIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVINYWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNIQKEI--------QALYSLLYHRMSTQNELVDLQ--------IENHIRHV 602
A + +I I + ++ ++++ + + + + N R
Sbjct: 482 TIADAATMKDITNTIAEAKNKVQEIIFEAQMNKLAPEPGMTLRESFEHNVSRVLNQARDT 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ + S + + Q + +G Q+ + GK + HF
Sbjct: 542 AGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQIVE-GKRIPFGFQDRSLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D + P +K G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 TK----DDHSPESK-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGT RN + +IQF Y
Sbjct: 656 KALEDVMVQYDGTTRNSLGD-VIQFVYG 682
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 165/642 (25%), Positives = 280/642 (43%), Gaps = 75/642 (11%)
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTA 220
G + DL+ A+ + V +++ + G+P E E LQ V + ++ G
Sbjct: 173 GAPSAEDDLTFALQQIVKSNIQVKSHEQDGSPAHVISEFEQL-LQYHVATLMNNQLNGLP 231
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIG 276
+S++ R P + + L+ ++R + K FS+R+VITGD ++++G
Sbjct: 232 QSTQRRSGR------PLKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDQVG 285
Query: 277 VPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF- 329
VP IA+ +TF E V NI L V N D LR +G
Sbjct: 286 VPRSIARNLTFPETVTPFNIERLMACVQNGPTEHPGAKYVIRDNGERIDLRYSKRGGDIH 345
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+ G V R ++D D + NR P+ HK S+ V V T ++N + P +ADFDGD
Sbjct: 346 LQTGYKVERHLVDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGD 405
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQ+ +AEV EL V +Q++S + + D+L ++ K+ FL K F
Sbjct: 406 EMNMHVPQTHETRAEVQELCMVPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFLPKDF 465
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP---------------PGFD- 489
+ M+ +P PA+ K WT Q++ ++P P D
Sbjct: 466 VMNILMWVPDWDGVVPTPAIVKP--VPLWTGKQMMSLIIPKINLENFHSQHPDDEPNADV 523
Query: 490 SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
S GD + +I+ E + G + T+ + I+ E GPE FF + Q ++ +
Sbjct: 524 SVGDTKVIIQDGEHIAGILCKKTVGNAGGGIIHVTAMEYGPEAAKRFFHACQVVVNYWML 583
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALY-------------SLLYHRMSTQNELVDLQI 595
+GFS+ + D +A + NI IQ L H T E + I
Sbjct: 584 QNGFSIGIGDTIADEATMGNIVNAIQTARDKVKVIIAAAHENKLKPHPGMTIRETFEADI 643
Query: 596 ENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
++ + + K KS + ++ + S + + Q A +G Q + +
Sbjct: 644 KSELNRARDSAGKSAEKSLSEHNNARQMVIAGSKGSSVNISQMAACVGQQSVEGNRIPFG 703
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
F +++L HF + D + P A+ G ++ + GL P E H++ RE ++ ++
Sbjct: 704 FKNRSL-----PHFTK----DDHSPEAR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTA 753
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 754 VKTAETGYIQRRLVKALEDVMAQYDGTVRN-SAGQIVQFCYG 794
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 282/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTHLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVRVMPFSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S+ + + + D L + K+ + F++ F Q L +
Sbjct: 493 QSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDNFIE--FDQVLNLL 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAILKPK--PLWSGKQILSIAIPKGIHLQRFDEGTTFLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ + F ++Q + +GFS + D
Sbjct: 609 DGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQICAKLFSNIQKVTNYWFLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + + KE QA H M+ + D ++ N R
Sbjct: 669 TIADGETMREITGTIAEAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L ++ + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDSTTRNSLGN-VIQFVYG 869
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +EI S++ + L +P LG KC++C G +E
Sbjct: 17 VQFGLFSPEEIRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+I+L P++H IS++K
Sbjct: 77 ---CPGHFGHIDLAKPVFHIGFISKIK 100
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDNTTRNSLGN-VIQFIYG 869
>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1407
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 185/716 (25%), Positives = 306/716 (42%), Gaps = 86/716 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++ KR+ E + L K F + + YI +Y+ VPP C+ DG S DL++ + +
Sbjct: 221 DLFKRMSNEDCELLGLKPSFGRPEQYIWQYISVPPVCIRPSVAQDGASN-EDDLTVKLTE 279
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V I + G P + E LQL+V Y+ E+ G + R V +
Sbjct: 280 IVFTNALIKQGLAKGAPIAQFME-HWEFLQLSVAMYINSELPGVPSQAGQKPMRGFVQR- 337
Query: 236 PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
K + R K FS R+VI+ D R++E+ VP +A+ +T+ ERV HN
Sbjct: 338 ----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTSHN 393
Query: 296 INYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHTF--LRPGQVVHRRIMDGDT 345
I+ L++ V N C + + GSS + L+ G++ LR G VV R I++GD
Sbjct: 394 IDNLKQAVRNG-CDVHPGANYVTAGSSGFKKYLKFGNRNAIADGLRIGDVVERHIINGDV 452
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ V V + ++N +CGP +ADFDGD ++L PQ+ A+ E
Sbjct: 453 VLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEA 512
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSPL--- 460
LEL SV+ L++ NG + D + + ++ ++ +F ++FTQ A L
Sbjct: 513 LELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRRDTFFDRRSFTQICCYLADGDLQID 572
Query: 461 -PRPALSKARCSARWTALQILQSVLPPGFDS---------C------------------- 491
P P + K WT QI ++ P S C
Sbjct: 573 IPPPTIWKP--VRLWTGKQIFNVLMRPNKQSKIFVNVESKCNKPQDAKAADYPRMKPLPD 630
Query: 492 ---GDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
D +L + SE++ G D+ T+ S + I I + GP E + + L
Sbjct: 631 LSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLCARY 690
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDL 593
L GFS+ + D + ++ Y+ ++ Q + ++
Sbjct: 691 LANCGFSLGINDVIPGRKLAAKKDDLVEKAYADCLDLIALAKKGKLENKPGCNQEQTLEA 750
Query: 594 QIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
I + + V+ V + + + + + S S +V V Q +G Q+ GK
Sbjct: 751 MISSVLSKVRDAVGEICMSELSRHNAPLIMATSGSKGSVINVSQMVACVGQQII-AGKRV 809
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ HF P P +K G ++ F+ GL P E + H+IS RE +V ++
Sbjct: 810 PDGFQDRSLPHF----PKKSKEPPSK-GFVRNSFYSGLLPTEFLFHAISGREGLVDTAVK 864
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+E G + + LM L D+ YD +VR + ++QF Y + L +P+
Sbjct: 865 TAETGYMQRRLMKALEDLTTQYDLSVRT-ATGGVVQFRYGDDGLDPACLEGDAQPI 919
>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
Length = 1390
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 185/680 (27%), Positives = 292/680 (42%), Gaps = 83/680 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P DG +I +YLP PP C+ P + S+ DL+ L ++++ +IR++
Sbjct: 200 GLDPLDGRPEMFIWQYLPAPPVCIR-PSVQQQSSSTEDDLTTK-LAEIVQVCGLIRTALV 257
Query: 192 GTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
+ + LQ + Y+ E+ G + R G SQ K + R
Sbjct: 258 KGAPITTLMEQWEFLQFQLAMYINSELPGLTAARHGKPIR-GFSQ----RLKGKQGRFRG 312
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN---- 305
K FS R+VI+ D +NE+ VP +A+ +++ ERVN NI L+ LV N
Sbjct: 313 NLSGKRVDFSGRTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQ 372
Query: 306 ----KLCLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
K L DG L G+K LR G V R + DGD V NR P+ HK S+
Sbjct: 373 WPGAKSILKKDDGGYKLDLNFGNKEQFAKDLRVGDTVERHLEDGDIVLFNRQPSLHKLSI 432
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ V V T ++N +CGP +ADFDGD ++L PQ+ A+AE L L V+ L +
Sbjct: 433 MSHLVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEALTLMGVKHNLATPK 492
Query: 420 NGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSP----LPRPALSKARCSAR 473
NG + D + + ++ K +F F A S +P PA+ K + A
Sbjct: 493 NGEPIIAATQDFITAAYLISSKDRFFTRHTFAYMCAHMTGSSEQLDIPPPAILKPQ--AL 550
Query: 474 WTALQILQSVL-------------------------PPGFDSCGDRYLIKKSEVLKGDFD 508
WT Q+ ++ P D + +++ SEV+ G D
Sbjct: 551 WTGKQVFNIMMRPNKSSKVLVNLDAKCKAYKRRPGEAPDMDPEDNFLVVRNSEVMCGRMD 610
Query: 509 RDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-FSLS--KA 564
+ T+ S + + I + GP+E + + L L + G S+ + D F L+ +
Sbjct: 611 KSTVGSGKKDSVFYVILRDYGPDEAVTAMNRLARLCARFMGNFGLSIGVFDVFPLTTLRE 670
Query: 565 ALWNIQKEIQALYSLLYHRMSTQNEL-------VDLQIENHIRHV--KMLVAKFILKSST 615
+ + +E L H+ +T +L +D +EN I V K+ A L T
Sbjct: 671 KIKILVREANLKCDELIHKFNT-GKLEKSAGCNLDQTLENSISGVLSKVRSAAGDLCLET 729
Query: 616 LG------YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
L + S S V Q +G Q+ G+ + HF P ++
Sbjct: 730 LSKHNAPLTMATSGSKGLAINVAQMVAVVGQQIIG-GQRVPNGFQDRSLPHF----PKNV 784
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 785 RNPASK-GFVQNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLST 843
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YD TVR S ++QF +
Sbjct: 844 QYDNTVR-TSSGDVVQFQFG 862
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 181/705 (25%), Positives = 308/705 (43%), Gaps = 72/705 (10%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVP 158
Q+ + V ++ S V +LKRI +E + L Y D IL+ LPVPP +
Sbjct: 122 QLMPEPVERKQQLSAERVLSVLKRITDEECQMLGLNPKYSRPDWMILQVLPVPPPPVRPS 181
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
+ D S DL+ + + + + ++G P E + LQ + Y
Sbjct: 182 VMMDTTSRSEDDLTHQLAMIIRHNETLKKQEKTGAPAHIISEF-AQLLQFHIATYFDNEL 240
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R T +S R + + S KA ++R + K FS+R+VIT D +
Sbjct: 241 PGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK------- 325
+E+GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 294 DELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYL 353
Query: 326 ---GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
L G V R + DGD V NR P+ HK S+ + + T ++N + P
Sbjct: 354 KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPY 413
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK- 441
+ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K+
Sbjct: 414 NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 473
Query: 442 YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP------------ 486
F++K + M+ +P P + K R WT Q+ ++P
Sbjct: 474 TFIEKDVFMNILMWWEDFDGKIPAPTILKPR--PLWTGKQVFNLIIPKQINLIRQSAWHA 531
Query: 487 ----GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
GF + GD + I+K EVL G + T+ + ++ I+ E GP+ +F Q
Sbjct: 532 ESETGFITPGDTIVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQW 591
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQ------ 594
L+ L GFS+ + D A + I + I +A + + + Q++ ++ +
Sbjct: 592 LVNYWLLQQGFSIGIGDTIADAATMEVINETISKAKHEVKQLIKAAQDKQLEAEPGRTMM 651
Query: 595 --IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
EN + V K + +S+ L ++ + S + + Q +G Q +
Sbjct: 652 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNV 710
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
GK HF + D P ++ G ++ + GL P E H++ RE ++
Sbjct: 711 EGKRIPYGFDGRTLPHFTK----DDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLI 765
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 766 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 188/744 (25%), Positives = 318/744 (42%), Gaps = 73/744 (9%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIK-NDGVAQRLLSSCCEVKEM 120
T EP K G G + I + ++E K Q + + V ++ + S V +
Sbjct: 79 TDEPIKKRGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNV 138
Query: 121 LKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
LKRI +E L Y D IL+ LPVPP + + D S DL+ + +
Sbjct: 139 LKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMII 198
Query: 180 LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVS 233
+ R R+G P E + LQ + Y + R T +S R + +
Sbjct: 199 RHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNDLPGQPRATQRSGRPIKSIC--- 254
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 255 ----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTP 310
Query: 294 HNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDG 343
+NI L+ELV+ + Y +RE + L G V R + DG
Sbjct: 311 YNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDG 370
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +A
Sbjct: 371 DFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 430
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SP 459
EVLEL V K ++S + + + D LL + + K+ ++K + M+
Sbjct: 431 EVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGK 490
Query: 460 LPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSEV 502
+P P + K R WT Q+ ++P GF + GD + I+K E+
Sbjct: 491 IPAPTILKPR--PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGEL 548
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + ++ + ++ I+ E GP+ +F Q L+ L +GFS+ + D
Sbjct: 549 LSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIAD 608
Query: 563 KAALWNIQKEI----QALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKF------- 609
+ + I I A+ L+ H + E +E+ V ++ K
Sbjct: 609 ASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSS 668
Query: 610 ----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+ +S+ L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 669 AQNSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD- 726
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 727 ----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 782
Query: 726 DVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGTVRN + +IQF Y
Sbjct: 783 DIMVKYDGTVRNSLGD-VIQFLYG 805
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 178/688 (25%), Positives = 296/688 (43%), Gaps = 72/688 (10%)
Query: 117 VKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
V +LKRI +E + L Y D IL+ LPVPP + + D S DL+ +
Sbjct: 139 VLNVLKRISDEECQMLGFNPKYARPDWMILQVLPVPPPPVRPAVMMDTTSRSEDDLTHQL 198
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDAR 229
+ + + ++G P E + LQ + Y + R T +S R + +
Sbjct: 199 AMIIRHNETLKKQEKTGAPAHIISEF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKSI 257
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E
Sbjct: 258 C-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPE 310
Query: 290 RVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRR 339
V +NI L+ELV+ + Y +RE + L G V R
Sbjct: 311 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 370
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
+ DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS
Sbjct: 371 LNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 430
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL- 457
+AEVLEL V K ++S + + + D LL + + K+ F++K + M+
Sbjct: 431 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 490
Query: 458 --SPLPRPALSKARCSARWTALQILQSVLPP----------------GFDSCGDRYL-IK 498
+P PA+ K R WT Q+ ++P GF + GD + I+
Sbjct: 491 FDGKIPSPAILKPR--PLWTGKQVFNLIIPKQINLIRYSAWHAESETGFLTAGDTVVHIE 548
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
K EVL G + T+ + ++ I+ E GP+ +F Q L+ L GFS+ + D
Sbjct: 549 KGEVLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLSHTQWLVNYWLLQQGFSMGIGD 608
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHIRHV------- 602
A + I + I + + + E + EN + V
Sbjct: 609 TIADAATMEVINETISRAKNEVKQLIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDD 668
Query: 603 -KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
K + +S+ L ++ + S + + Q +G Q + GK HF
Sbjct: 669 AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFDGRTLPHF 727
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P ++ G ++ + GL P E H++ RE ++ ++ SE G + + L+
Sbjct: 728 TK----DDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 782
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D+++ YDGTVRN + +IQF Y
Sbjct: 783 KAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|123979346|gb|ABM81498.1| RNA polymerase II largest subunit [Nephroma parile]
Length = 979
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/537 (27%), Positives = 244/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 250 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 309
Query: 306 ------KLCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+
Sbjct: 310 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLXXXX 369
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
T ++N + P +ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 370 XXXXXXXXXXXXTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 429
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL+K + ++ LP+PA+ K + +W
Sbjct: 430 QRNGPLMGIVQDTLCGIYKICRRDIFLNKDQVMNILLWVPDWDGVLPQPAILKPQ--PKW 487
Query: 475 TALQILQSVLPPGFD---SCGDRY--------LIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+PPG + + Y L+ E++ G F + ++ + +V I
Sbjct: 488 TGKQIISLVVPPGLNLWTGSSEGYSPLNDEGLLVSGGELMYGLFKKKSVGNSPGGVVHII 547
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ + +
Sbjct: 548 FNEKGPETAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQRIEDAVNKQKDEVAEI 607
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V+K + K+ + +S ++ Q A G G
Sbjct: 608 TRSATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEESLKDINNATQMARSGSKG 667
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 668 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 727
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 728 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 783
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 187/744 (25%), Positives = 318/744 (42%), Gaps = 73/744 (9%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIK-NDGVAQRLLSSCCEVKEM 120
T EP K G G + I + ++E K Q + + V ++ + S V +
Sbjct: 160 TDEPVKKRGGCGAQQPNITVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNV 219
Query: 121 LKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
LKRI +E L Y D IL+ LPVPP + + D S DL+ + +
Sbjct: 220 LKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMII 279
Query: 180 LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVS 233
+ R R+G P E + LQ + Y + R T +S R + +
Sbjct: 280 RHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC--- 335
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 336 ----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTP 391
Query: 294 HNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDG 343
+NI L+ELV+ + Y +RE + L G V R + DG
Sbjct: 392 YNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDG 451
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +A
Sbjct: 452 DFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 511
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SP 459
EVLEL V K ++S + + + D LL + + K+ ++K + M+
Sbjct: 512 EVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGK 571
Query: 460 LPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSEV 502
+P PA+ K R WT Q+ ++P GF + GD + I+K E+
Sbjct: 572 IPAPAILKPR--PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGEL 629
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + ++ + ++ I+ E GP+ +F Q L+ L +GFS+ + D
Sbjct: 630 LSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIAD 689
Query: 563 KAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV--------KML 605
+ + I + E++ L + + + + EN + V
Sbjct: 690 ASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSS 749
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
K + +S+ L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 750 AQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD- 807
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 808 ----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 863
Query: 726 DVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGTVRN + +IQF Y
Sbjct: 864 DIMVKYDGTVRNSLGD-VIQFLYG 886
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 106 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 162
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 163 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 217
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 218 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 277
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 278 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 337
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 338 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 395
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 396 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 453
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 454 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 513
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 514 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 573
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 574 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 632
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 633 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 687
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 688 KALEDIMVHYDNTTRNSLGN-VIQFIYG 714
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 322/754 (42%), Gaps = 85/754 (11%)
Query: 58 ESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDG-------VAQRL 110
E GT +P K G G + I + ++E K + KND V ++
Sbjct: 158 EQQGTDDPVKKRGGCGAQQPNITVDGMKMVAEYKAP------KKKNDDQEQLPEPVDRKQ 211
Query: 111 LSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSS 169
+ S V +LK I +E L F + D IL+ LP+PP + + D S
Sbjct: 212 ILSAERVLNVLKHISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 271
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R R+G P E + LQ + Y + R T +S
Sbjct: 272 DLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNELPGQPRATQRSG 330
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S KA ++R + K FS+R+VIT D ++E+GVP+ IA
Sbjct: 331 RPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIAL 383
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPG 333
+T+ E V +NI L+ELV+ + Y +RE + L G
Sbjct: 384 NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELG 443
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 444 YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 503
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
PQS +AEVLEL V K ++S + + + D LL + + K+ ++K +
Sbjct: 504 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNI 563
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD 493
M+ +P PA+ K R WT Q+ ++P F + GD
Sbjct: 564 LMWWEDFDGKVPAPAILKPR--PIWTGKQVFNLIIPKQINLIRFSGWHSEAETRFITPGD 621
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L +GF
Sbjct: 622 TMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 681
Query: 553 SVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQNELVDLQ-IENHIRHVK 603
S+ + D A + NI + I + + +++ + ++ EN + V
Sbjct: 682 SIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEV- 740
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSKTLVE 655
+ A+ + SS L +S + A++ + F+ + Q + GK
Sbjct: 741 LNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGKRIPFGFTN 800
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G
Sbjct: 801 RTLPHFTKN-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 855
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 856 IQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 888
>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
KIN4/I]
gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
KIN4/I]
Length = 889
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 182/688 (26%), Positives = 298/688 (43%), Gaps = 92/688 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
EV+ L+ IP++ K L G+ P++ +L LPVPP + I + DL
Sbjct: 188 EVRSRLENIPDKDAKVL---GFDPKEARPEWAVLTVLPVPPVTVRPSIILETGMRSEDDL 244
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVES------NDLQLAVGQYL--EVRGTAKSS 223
+ K +I+R++ N ES E+ LQ V + E+ G +
Sbjct: 245 T-------HKLADIVRTNNKLRENIESGASEAMIENLWGLLQYHVATFFDNEIPGIPPAR 297
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPF 279
S P T L+ F SG FS+R+VI+ D +NE+GVP
Sbjct: 298 HR-------SGKPLRTLAQRLKGKEGRFRSNLSGKRVDFSARTVISPDPNISINEVGVPI 350
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTF--- 329
E+A+ +T +V NI +++LV N + DG LR
Sbjct: 351 EVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPGANYVIMKDGRR-IDLRYAKDRKIIAES 409
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+PG V R + DGD V NR P+ H+ S+ A V V T ++ PL+C P +ADFDGD
Sbjct: 410 LQPGWTVERHLQDGDVVLFNRQPSLHRMSIMAHLVRVLPGKTFRLCPLVCPPYNADFDGD 469
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK-KYFLDKAF 448
++L PQS A+AE LEL VEK +LS G + D + ++ LD++
Sbjct: 470 EMNLHVPQSEEARAEALELMLVEKHILSPRYGGPIIGGLQDYISGAYLLTTVATLLDRSD 529
Query: 449 TQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFD------------SCGDR 494
Q+L LP PA+ + WT Q+ LP F+ C D
Sbjct: 530 VQELLGVTGYEGELPEPAILSPKTV--WTGKQLFSVFLPKDFNYSGKANISTGELKCDDE 587
Query: 495 Y-------LIKKSEVLKGDFDRDTIP-SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
Y +++ E+++G D+ +I ++ I +E GPE+ E +D + +
Sbjct: 588 YCFYDSFVVVRDGELVEGVLDKKSIGHEQPKSLMHWIVYEYGPEKGREIYDRAFKMFLRF 647
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDL 593
+ GF+ +D L A I++ ++ Y + + T E ++L
Sbjct: 648 IEKRGFTTRYDDVRLPPEAKKEIEEVLKEAYEEVEKLIEDFKNGLLEPLPGRTLEETLEL 707
Query: 594 QIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
I + + + + AK++ + + + + + + Q A LG Q S RG+
Sbjct: 708 MIMDVLAKARDKAGEIAAKYLSPLNNAVIMAKAGARGNILNLTQMAALLG-QQSVRGERI 766
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ + HFE D++ P A+ G +K F+ GL P E H+ RE +V ++
Sbjct: 767 KRGYRKRTLPHFEW---GDIS-PDAR-GFVKHSFYEGLTPTEVFFHAAGGREGLVDTAVR 821
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRN 737
S+ G + + L+ L+D+ + YDGTV++
Sbjct: 822 TSQSGYMQRRLINALQDLKVDYDGTVKD 849
>gi|390600773|gb|EIN10167.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1405
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 195/706 (27%), Positives = 309/706 (43%), Gaps = 91/706 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ +RI +E + L G P+ G +I +Y+ VPP + DG S DL
Sbjct: 218 KVLDLFRRISDEDCELL---GMKPEQGRPEEFIWQYISVPPVAIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E + LQL+V Y+ E+ G R
Sbjct: 274 TVKLTEIVFTNALIKQGLAKGAPTPQFME-QWEFLQLSVAMYINSELPGVPSQMGQKPIR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
G Q K + R K FS R+VI+ D R++E+ VP +A+ +T+ E
Sbjct: 333 -GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPE 387
Query: 290 RVNVHNINYLQELVDNKLCL-----TYSDGSSSYS--LREGSKGHTF--LRPGQVVHRRI 340
RV HNI L++ V N + + GSS + L+ G + LR G +V R I
Sbjct: 388 RVTAHNIEKLRQAVRNGCDIHPGANYVTAGSSGFKKFLKFGKRDAIADGLRIGDIVERHI 447
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
+DGD V NR P+ HK S+ V V T ++N +CGP +ADFDGD ++L PQ+
Sbjct: 448 IDGDIVLFNRQPSLHKLSIMCHRVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEE 507
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQLAMFALS 458
A+ E LEL +++ L+S NG + D + + ++ ++ F D++ FTQ + FA +
Sbjct: 508 ARTEALELMNIKHNLVSPRNGEPVIAAIQDFITASFLLSQRDRFFDRSQFTQVCSYFADA 567
Query: 459 PL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C-------GDRY--- 495
L P P + K + WT Q+ ++ P S C + Y
Sbjct: 568 NLHIDIPPPTIWKPQ--RLWTGKQVFNVLMRPNKKSNILVNVESKCNKVEAPKAENYPKR 625
Query: 496 --------------LIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQ 540
++ SE++ G D+ T+ S + I I + GP E + +
Sbjct: 626 MKPINDLAPNDGWLVVVNSEIMCGVMDKATLGSGKKKSIFGVILRDYGPHEAAAAMNRVA 685
Query: 541 PLLMENLFADGFSVSLED-------FS-----LSKAALWNIQKEIQALYSLLYHRMS-TQ 587
L L GFS+ + D FS + KA + +A LL ++ Q
Sbjct: 686 KLSARWLANYGFSLGINDVIPGPVLFSKKDQLVEKAYAACLDLIARAKKGLLENKAGCNQ 745
Query: 588 NELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLS 643
+ ++ I + + V+ V + LK S LI + S +V V Q +G Q+
Sbjct: 746 EQTLEAMISSVLSKVRDEVGEICLKELSRYNAPLIMATCGSKGSVINVAQMVACVGQQII 805
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL P E + H+IS RE +
Sbjct: 806 -AGHRVPDGFQDRSLPHF----PKKSREPPSK-GFVRNSFYSGLLPTEFLFHAISGREGL 859
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
V ++ +E G + + LM L D+ YD TVRN I+QF Y
Sbjct: 860 VDTAVKTAETGYMQRRLMKALEDLTTHYDLTVRNAIG-GIVQFRYG 904
>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
Length = 870
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/693 (24%), Positives = 304/693 (43%), Gaps = 72/693 (10%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVST 166
+R L + E+ + K I E KKL + Y + I+ LPVPP + + +
Sbjct: 9 ERRLLTPAEILNVFKHISPEDCKKLGFNEDYARPEWMIITVLPVPPPAVRPSVQVNDTAR 68
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
DL+ + V + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 69 GEDDLTFKLADIVKYNMSVQKLEMDGSPLHVISEYEAL-LQFHVATYMDNDIAGQPQALQ 127
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 128 K-------SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRS 180
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L LV N + D L+ + G L+ G
Sbjct: 181 IARTLTYPEMVTPYNIHKLTLLVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYG 240
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
+V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 241 WIVERHLMDNDPVLFNRQPSLHKMSMMTHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 300
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 301 HVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIE--YDQVM 358
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGF--------------DSCGD 493
+ P +P P + K + WT Q+L V+P G D G
Sbjct: 359 NILYWIPTWDGVIPEPTIIKPK--PLWTGKQMLSMVIPKGINIERKDEKFTYLSKDDTG- 415
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
LI E++ G ++ T+ + ++ ++ EKGP+ + F ++Q ++ L +GFS
Sbjct: 416 -MLIIDGEIMLGVVNKKTVGATGGGLIHAVMREKGPQVCADLFGNIQKVVNYWLLHNGFS 474
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIEN 597
+ + D + I I + + + NEL Q+ N
Sbjct: 475 IGIGDTIADAPTVRQITNTILKAKDKVQEIILRAQNNELPPEPGMTLRESFEQNVSQVLN 534
Query: 598 HIRH-VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
R V A + + + ++ + S + + Q + +G Q+ + GK +
Sbjct: 535 QARDDVGKATADALKDLNNVKQMVSAGSKGSNINISQMSACVGQQIVE-GKRIPFGFSDR 593
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 594 SLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L D+++ YDGT RN N ++QF Y
Sbjct: 649 QRRLVKALEDIMVHYDGTTRNSLGN-VLQFIYG 680
>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
Length = 1459
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 221/910 (24%), Positives = 358/910 (39%), Gaps = 202/910 (22%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQ-----------LAN---PFLGLPLEFG--- 55
+ V I L T + + +S+C I+ S+ L+N P+ L L G
Sbjct: 3 KFVPIETPLVTIDSVGFSVMSNCDIAKQSEIPINNREIYYYLSNKPFPYGVLDLRLGTNR 62
Query: 56 ---KCESC--GTSEPGKCEGHFGYIELPIPIYHPSH-------------------ISELK 91
KC++C G +E C GH+GYI+L +P++H ISE
Sbjct: 63 NDQKCKTCNLGLTE---CLGHWGYIDLHLPVFHIGFFKYTIQILSCICKKCSYLLISEDN 119
Query: 92 LTMYAFQLQIKNDGVAQRLL--------------SSCCEVKEMLKRIPEET--------- 128
+ + Q I D +A+++L C + LKRI + T
Sbjct: 120 MKRFKDQALITTDPLAKKILFKRLVAECRKVIKCPRCNSTQGSLKRIVKPTLDQFMKIRH 179
Query: 129 --RKKLAGKGYFPQD----------------------------GYILEYLPVPPNCLSVP 158
++K GK ++ I+ +PVPP+C+
Sbjct: 180 TVKQKQGGKMQTVEEDLDPLYVKSLFKSINPAHLLVLNIDKPENLIISSIPVPPSCIRPS 239
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSS-RSG------TPNFESQEVES----NDLQ 207
D + DL+ +L ++ +I+S ++G N++ +++ N
Sbjct: 240 VTLDEHGSTEDDLT-CILSDIVDLNNLIKSQCKNGFQTNQFIGNWQFMQLQCTRYINSES 298
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
AV Q L + KSSR + R K + R K FS+R+VI+ D
Sbjct: 299 PAVSQLLATKNITKSSRGICQRL----------KGKEGRFRGNLSGKRVDFSARTVISPD 348
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLR 321
++++ VP IAQR+T+ ERVN NIN L+ V N C S +LR
Sbjct: 349 PNVGIDQVVVPKYIAQRLTYPERVNTTNINILKRAVLNGPDSWPGACYVNKLDGSKCNLR 408
Query: 322 EGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 379
+ + L G +V R I DGD V NR P+ H+ S+ A V T++ N +C
Sbjct: 409 YANPKNVSERLAVGDIVERHIWDGDIVLFNRQPSLHRMSIMAHRAIVMQGSTLRFNECVC 468
Query: 380 GPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL-LSLKVM 438
P +ADFDGD ++L +PQ+ A+AE L V L S NG + D L S +
Sbjct: 469 SPYNADFDGDEMNLHFPQTEEARAEAFHLMGVLNNLTSPKNGEPLVAAVQDFLSASYLLT 528
Query: 439 FKKYFLDKAFTQQLAM-----FALSPLPRPALSKARCSARWTALQILQSVLPPG------ 487
K YFLDK L +P PA+ WT Q+ +L P
Sbjct: 529 SKDYFLDKKKIFNLCCSFCDGIEHIDVPPPAIIYP--IQLWTGKQVFSLLLSPNRKDRTY 586
Query: 488 ------------------------FDSCGDRY-LIKKSEVLKGDFDRDTIPSVINEIVTS 522
S D Y ++ SE++ G ++T+ + ++
Sbjct: 587 INLELKEREFKPYKSNTSVYGNSDVMSPSDGYVVVSNSELMCGSVGKNTLGPGKSGLIFH 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED------FSLSKAALWN-------- 568
+ +G + +F + L L G S+ ++D L K + N
Sbjct: 647 LLRNQGSKSTSKFLSRISKLTCRWLCEYGLSIGIDDVIPSHELILEKGVVLNNGYKKVDH 706
Query: 569 -IQK----EIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----SSTLGYL 619
I+K EIQA + + E ++L I+ + ++ K + + +
Sbjct: 707 EIEKYNRGEIQAKFG------CSAQETLELIIKGELDDLRNQAGKVCYEHLPPQNKPLIM 760
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
+S + ++ + Q +G Q + G+ V HFE MD P ++ G +
Sbjct: 761 FNSGAKGSLINIAQMIACVG-QQNVSGQRIQNGFVNRSLPHFE----MDSLEPKSR-GFV 814
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
FF GLDP E H++S RE ++ ++ +E G + + LM L D+ +CYD TVR
Sbjct: 815 ANSFFTGLDPQEFFFHTMSGREGLIDTAVKTAETGYMQRRLMKALEDLSVCYDHTVR-TS 873
Query: 740 SNSIIQFDYA 749
++QF Y
Sbjct: 874 DGQVVQFLYG 883
>gi|161899215|ref|XP_001712834.1| largest subunit of RNA polymerase subunit II [Bigelowiella natans]
gi|75756327|gb|ABA27222.1| largest subunit of RNA polymerase subunit II [Bigelowiella natans]
Length = 1510
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 170/660 (25%), Positives = 287/660 (43%), Gaps = 78/660 (11%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
IL LP+PP + + DL+ L ++K + ++ S++ + E E
Sbjct: 220 ILYNLPIPPINIRPYSKKNLFIKYEDDLTYK-LHDIIKANDRLQRSKNSRKSSELLENYR 278
Query: 204 NDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFS 259
L + Y + SS V VS P + L+ + R + K F+
Sbjct: 279 ELLSYHIFTYFD-----NSSTKVKLSTHVSGKPIKSISQRLKGKFGRFRRNLVGKRVDFT 333
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD---NKLCLTY--SDG 314
R+VITGD+Y + E+G+P IA+++T E VN NI+ L ++D N+L Y
Sbjct: 334 GRTVITGDSYIHLEELGIPMLIAKKLTLPEVVNKFNIDRLSYIIDSTGNELKANYIIKGY 393
Query: 315 SSSYSLR-EGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
+ LR + S L+ G ++ R I GD V +NR P+ HK S+ V + T +
Sbjct: 394 NKVIDLRYKSSNSIILLKYGFIIERHIQSGDIVILNRQPSLHKMSMMGHRVKIFPKLTFR 453
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL- 432
+N + P +ADFDGD +++ PQS ++E + +V ++S + L D L
Sbjct: 454 LNLSVTTPYNADFDGDEMNIHIPQSELTRSESTFIMNVINNIMSPQANKPVIGLVQDTLS 513
Query: 433 ----LSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP-- 486
LS + F F+ P S + +WT Q+L S LP
Sbjct: 514 TCYTLSSRDSFLNSLEKDYLKNNYKNFSTQP------SIIKPLKKWTGKQLLSSFLPHLT 567
Query: 487 ----------GFDSCGD----RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
F+ + I+ +++ G F++ TI + N I+ +I+ E
Sbjct: 568 FLHRESRKTFHFEDSNNYNDSSMYIQDGKIMMGLFNKKTIGASYNSIIQNIWLEYDHFSC 627
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR-MSTQNELV 591
F D Q +GF+VSL D L K L+NI I+ Y + + M T+ ++
Sbjct: 628 RNFIDLCQTTARHTNIKNGFTVSLWDVFLEK-KLFNIFYNIKKFYIHNWIKLMETKKQIK 686
Query: 592 DLQIENH--------------IRHVKMLVAKFI----LKSSTLGYLIDSKSDSAVSKVVQ 633
QI+N ++ L+ F+ +++ + +++S S ++ ++Q
Sbjct: 687 MTQIKNFKFNTITKINNLSTTKKYFSSLINLFLNLTHNQNNNMNIMLNSGSKGSLINLIQ 746
Query: 634 QAGFLG----LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
G LG +++++ F+ + +I H P G I FF+GL+P
Sbjct: 747 IVGLLGKQSSIKINNMNHFHGRLFCHNIIGHI----------PIESTGFILSNFFYGLNP 796
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E H+IS RE I+ +S +E G + + + +++ YDGTVRN S SIIQF Y
Sbjct: 797 HEYFCHAISGREGIIDTSIKTAETGYIQRKFSKSMENLICYYDGTVRN-SSQSIIQFLYG 855
>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
Length = 871
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 181/698 (25%), Positives = 311/698 (44%), Gaps = 71/698 (10%)
Query: 103 NDG--VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI 160
NDG QR+LS+ E+ + K I E +L F + +++ + P P I
Sbjct: 5 NDGDEPEQRVLSTE-EILNIFKHISPEDSTRLGFNEEFARPEWMILNVLPVPPPPVRPSI 63
Query: 161 SDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
S S D L +LK + + +G P+ +E ES LQ V Y++ +
Sbjct: 64 SFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIA 122
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VI+GD ++
Sbjct: 123 GQPQALQK-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD 175
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
++GVP IA+ +T+ E V +NI+ L +LV N D LR + G
Sbjct: 176 QVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAG 235
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I D D V NR P+ HK S+ A V V T ++N + P +ADF
Sbjct: 236 DIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADF 295
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L +V Q++S+ + + + D L + K+ + FL+
Sbjct: 296 DGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 355
Query: 446 KAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC---- 491
F + L M P +P PA+ K + W+ Q+L +P G FD
Sbjct: 356 --FDEVLNMLYWVPDWDGVIPTPAIIKPK--PLWSGKQVLSIAIPRGIHLQRFDEGTTLL 411
Query: 492 ---GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ L+ +++ G D+ T+ S ++ + EKGP + F ++Q ++ L
Sbjct: 412 SPKDNGMLVVDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPTICAKLFGNIQKVVNFWLL 471
Query: 549 ADGFSVSLED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD-- 592
+GFS + D + +K + ++ KE Q+ H M+ + D
Sbjct: 472 HNGFSTGIGDTIADGSTIKEITETIADAKRKVEDVTKEAQSNLLTAKHGMTLRESFEDNV 531
Query: 593 LQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
++ N R +A+ L + + ++ + S + + Q + +G Q S GK
Sbjct: 532 VRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIGY 590
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
V+ HF + +Y G ++ + GL P E H++ RE ++ ++ +
Sbjct: 591 GFVDRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 645
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L D+++ YDGT RN N +IQF Y
Sbjct: 646 ETGYIQRRLVKALEDIMVHYDGTARNSLGN-VIQFIYG 682
>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
Length = 870
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 276/628 (43%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E ES LQ V Y++ + G ++ +
Sbjct: 73 DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-LQFHVATYMDNDIAGQPQALQK-- 129
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD + ++GVP IA+
Sbjct: 130 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELGQVGVPKSIAR 184
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V NI L ELV N D LR + G L+ G V
Sbjct: 185 TLTYPETVTPFNIKKLTELVMNGPNEHPGAKYIIRDTGDRIDLRYNKRAGDIALQYGWKV 244
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD V NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 245 ERHLMDGDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 304
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+L + +V Q++S + + + D L ++ M + F+D + Q + +
Sbjct: 305 QSEETRAELLNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFID--YDQMMNIL 362
Query: 456 AL-----SPLPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
+P+P + K R WT Q+L +P G FD + LI
Sbjct: 363 YWIKDWDGVIPQPTILKPR--PLWTGKQMLSMAIPKGIHLQRFDEGTTLISPKDNGMLII 420
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ + ++ ++ EKGP E F LQ ++ L +GFS+ + D
Sbjct: 421 DGKIIFGVVDKKTVGATNGGLIHTVMREKGPTECANLFGKLQKVVNFWLLHNGFSIGIGD 480
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHIRHV 602
+L+K + + E+Q H M+ + D I N R
Sbjct: 481 TIADASTMKEITDAIALAKVKVDEVTLEVQQNKLTAKHGMTLRESFEDNVIRYLNEARDK 540
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ + S + + Q + +G Q S GK + + HF
Sbjct: 541 AGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHF 599
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 600 AKD-----DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLV 654
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN IIQF Y
Sbjct: 655 KALEDIMVHYDGTTRNSLG-GIIQFVYG 681
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 279/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + +++ F Q +
Sbjct: 303 HVPQSPETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE--FDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NMCYWIPNWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDGGRDLLSAKDTGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHI 599
+ D + + +I IQ + + + + QN L ++ N
Sbjct: 479 IGDTIADASTMKDITTTIQEAKTKVQEIILDAQQNRLEPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 177/685 (25%), Positives = 302/685 (44%), Gaps = 65/685 (9%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
V E+ K I EE L + + + +L L VPP C+ + G + DL+ +
Sbjct: 215 VYEIFKHISEEECFCLGMDERYAKPSWMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKL 274
Query: 176 LKKVLKQVEIIRSSRSGT-PNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ 234
V E+IR+ +SG P+ ++ V+ +A E+ G ++ + S
Sbjct: 275 SDIVKANNELIRNEQSGAAPHILAENVKMLQFHVATLYDNELPGLPRAMQK-------SG 327
Query: 235 DPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
P + K L+ ++R + K FS+R+VIT D ++NE+GVP IAQ +TF E
Sbjct: 328 RPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKINEVGVPRSIAQNLTFPEI 387
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRI 340
V NI +QELV + Y +RE + L+ G V R +
Sbjct: 388 VTPFNIERMQELVSRG---NNQYPGAKYIVRENGERIDLRFHPKASDLHLQCGYRVERHV 444
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
+GD + NR PT HK S+ + V T ++N + P +ADFDGD +++ PQSL
Sbjct: 445 QNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLE 504
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL-- 457
+AE+ +L V +Q+++ + + D L +++ M K+ +L+K L MF
Sbjct: 505 TRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIW 564
Query: 458 -SPLPRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RY 495
+P PA+ K + WTA Q+ ++P + S GD +
Sbjct: 565 NGKVPIPAILKPK--PLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKV 622
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+I+ ++L G + T+ + ++ +F E G E F+ LQ ++ L +G S+
Sbjct: 623 IIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHEVAGAFYSHLQTVVNAWLLYEGHSIG 682
Query: 556 LEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL--- 611
+ D + +IQ I +A ++ N+ ++ N +R IL
Sbjct: 683 IGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDA 742
Query: 612 KSSTLGYLIDSKS--DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF---ERIYP 666
+ T G S S ++ S VV A + +S + VE F +R P
Sbjct: 743 RDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLP 802
Query: 667 --MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ ++ G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 803 HFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 862
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
V+ICYDGTVRN + +IQF Y
Sbjct: 863 ESVMICYDGTVRN-SNGQVIQFRYG 886
>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
Length = 2063
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 180/695 (25%), Positives = 300/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 866 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 914
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 915 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 971
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 972 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 1029
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++G FL+ G V+ R I DGD
Sbjct: 1030 KLQQRVRNG---TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQEGDVIERHIEDGDI 1086
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 1087 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 1146
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 1147 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPQTRFD 1206
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 1207 LPPPAVLKPQM--LWTGKQVFNILMRPNKDDPVLVNLDAACRQFKAPKDGTPRDLDPKDS 1264
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I + GP E + L L GF
Sbjct: 1265 WLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNRLSRLSARWFTNMGF 1324
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S+ L + ++ Y+ + ++ T + + ++ Q+ +
Sbjct: 1325 SIGITDVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 1384
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 1385 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 1442
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G
Sbjct: 1443 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETG 1497
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S +I+QF Y
Sbjct: 1498 YMSRRLMKSLEDLSTRYDDTVRN-SSAAIVQFQYG 1531
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 180/691 (26%), Positives = 306/691 (44%), Gaps = 69/691 (9%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
QR+L+ E+ + K I +E +L F + +++ + P P IS S
Sbjct: 12 QRILT-MEEILNIFKHISKEDSNRLGFNEEFARPEWMILTVLPVPPPPVRPSISFNESQR 70
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
D L +LK + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 71 GEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQ 129
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 130 K-------SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L LV N D LR + G L+ G
Sbjct: 183 IAKTLTYPEVVTPYNIDRLTFLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L
Sbjct: 303 HVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE--LDQVL 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + WT QIL +P G FD +
Sbjct: 361 NMLYWVPDWDGVIPTPAIIKPK--PLWTGKQILSIAIPKGIHLQRFDEGTTLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G D+ T+ S ++ + EKGP+ F ++Q ++ +GFS
Sbjct: 419 LIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARLFGNIQKVVNYWFLHNGFSTG 478
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
+ D + +K + ++ KE QA H M+ + D ++ N
Sbjct: 479 IGDTIADGQTMREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ LK + + ++ + S + + Q + +G Q S GK + V+
Sbjct: 539 RDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 598 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YD T RN N +IQF Y
Sbjct: 653 RLVKALEDIMVHYDSTTRNSLGN-VIQFVYG 682
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 169/644 (26%), Positives = 283/644 (43%), Gaps = 76/644 (11%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P QE ES LQ V Y++ +
Sbjct: 186 DGGAGMRGEDDLTYKLGDIIRANGNVKRCDIEGSPQHLIQEFESL-LQFHVATYMDNNIA 244
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 245 GLPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 297
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI+ L ELV N D LR + G
Sbjct: 298 EVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 357
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L G V R I+DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 358 DINLAYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 417
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS +AE+ +L V ++S + + D L + M ++ L
Sbjct: 418 DGDEMNLHVPQSEETRAEISQLCMVSLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVVLS 477
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------P 486
+A + ++ +P+PA+ K + RWT QI+ +LP P
Sbjct: 478 EAQVMNILLWVPDWDGVIPQPAILKPQ--PRWTGKQIISLILPATLNYRQIEKEKKTEKP 535
Query: 487 GFDSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
F D ++ E++ G + + + I+ IF EKGPE L FF+ Q ++
Sbjct: 536 LFSPLKDEGVMVDSGELMFGLLKKSAVGASKQGIIHIIFNEKGPEAALNFFNGAQTVVNY 595
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKML 605
L +GFS+ + D + K IQ + + + S E+ L + + + +
Sbjct: 596 WLLHNGFSIGIGDTIPDR-------KTIQGIEDAVSEQKSAVTEITRLATADQLESLPGM 648
Query: 606 VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL--GLQLSDRGKFYSK-------TLVED 656
+ +S L ++ ++A +K + L G+Q++ G S +V
Sbjct: 649 SIRETFESKVQAALNQAR-ENAGTKTQESLKDLNNGVQMALSGSKGSTINISQMTAIVGQ 707
Query: 657 IASHFERIYPMDLNYPTAKY-----------GLIKGCFFHGLDPYEEMTHSISTREVIVR 705
A +RI P Y T + G ++ + GL P E H+++ RE ++
Sbjct: 708 QAVEGKRI-PFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 766
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L DV+ YDGTVRN + ++QF Y
Sbjct: 767 TAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYG 809
>gi|393215308|gb|EJD00799.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1403
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 191/724 (26%), Positives = 305/724 (42%), Gaps = 96/724 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ +RI +E + L G P G YI +Y+ VPP C+ DG S DL
Sbjct: 218 KVLDLFRRISDEDCELL---GLNPSHGRPEEYIWQYISVPPVCIRPSVAQDGASN-EDDL 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
++ + + V I + G P + E + + LQ++V Y+ +S
Sbjct: 274 TVKLTEIVFTSALIKQGLAKGAPTQQFME-QWDFLQVSVAIYI-------NSETPGIPIQ 325
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
++Q P L+ + F SG FS R+VI+ D R++E+ +P +A+ +T+
Sbjct: 326 MAQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAIPERVAKILTY 385
Query: 288 EERVNVHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKGHTF--LRPGQVVH 337
ERV HN+N L+ V N C + + GSS + L+ G++ LR G VV
Sbjct: 386 PERVTAHNVNVLRYAVRNG-CDVHPGANYVTAGSSGFKKFLKFGNRNAIADGLRIGDVVE 444
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R ++DGD V NR P+ HK S+ V V + ++N +CGP ADFDGD +++ PQ
Sbjct: 445 RHLIDGDVVLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYGADFDGDEMNIHVPQ 504
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMF 455
+ A+ E L L S++ L++ NG + D + + L ++F + F Q + F
Sbjct: 505 TEEARTEALTLMSIKLNLVTPRNGEPVISAIQDFITASFLLSQRDRFFDRQQFAQICSYF 564
Query: 456 ALSPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C----------- 491
+ L P P + K + WT QI ++ P S C
Sbjct: 565 CDADLQIDIPPPTILKPQ--RLWTGKQIFNVLMRPNKRSNVLVNVESKCNKEQKPDPANY 622
Query: 492 -----------GDRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDS 538
D YL I SE++ G D+ T+ S I I + GP+E +
Sbjct: 623 PRMNPAPDLSPNDGYLVIVNSEIMCGVMDKATVGSGKKRSIFGVILRDYGPDEAAAAMNR 682
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS------------- 585
+ L L GFS+ + D N K I+ Y ++
Sbjct: 683 IAKLCARWLSNIGFSLGINDVIPGPTLSANKDKLIETAYETCIDLIAQAKKGKLENKPGC 742
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQ 641
Q + ++ I + V+ V +K S LI + S + V Q +G Q
Sbjct: 743 NQEQTLEAMISGVLSKVRDTVGDTCMKELSRHNAPLIMATCGSKGSAINVCQMVACVGQQ 802
Query: 642 LSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
+ GK + HF P P +K G ++ F+ GL P E + H+IS RE
Sbjct: 803 II-AGKRVPDGFQDRSLPHF----PKKSKEPPSK-GFVRNSFYTGLLPTEFLFHAISGRE 856
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA 761
+V ++ +E G + + LM L D+ YD +VRN ++QF Y + L
Sbjct: 857 GLVDTAVKTAETGYMQRRLMKALEDLTTMYDMSVRN-SEGGVVQFQYGDDGLDPGCLEGD 915
Query: 762 GEPV 765
+PV
Sbjct: 916 AQPV 919
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 161/628 (25%), Positives = 281/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHTIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTMLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHVIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V +Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIE--LGQVLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + WT Q+L +P G FD + L+
Sbjct: 551 YWVPDWDGVIPTPAILKPK--PLWTGKQLLSVAIPKGIHLQRFDEGTTLLSPKDNGMLVI 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ F ++Q ++ GFS + D
Sbjct: 609 DGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCATLFSNIQKVVNYWFLHCGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 669 TIADGQTMRQITEAIAEAKVKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDK 728
Query: 603 KMLVAKFILKSST-LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N IIQF Y
Sbjct: 843 KALEDIMVHYDGTTRNSLGN-IIQFIYG 869
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +EIC S++ + L +P LG KC++C G +E
Sbjct: 17 VQFGLFSPEEICAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRSLKCQTCQEGMNE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H IS++K
Sbjct: 77 ---CPGHFGHIELAKPVFHIGFISKIK 100
>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
fumigatus Af293]
gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1453
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 180/695 (25%), Positives = 302/695 (43%), Gaps = 93/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPKEARPEM----------FLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALMKGAPVQTIVECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
LQ+ V N T ++Y +++GS FL+ G V+ R I DGD
Sbjct: 417 KLQQRVRNG---TKKWPGANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ ++ L P
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDR 494
LP PA+ K + WT Q+ ++ P D +C D
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDG 651
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V I GP E + L L GF
Sbjct: 652 WLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGF 711
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHI 599
S+ + D S++ + + + ++ Y+ + ++ T + + ++ Q+ +
Sbjct: 712 SIGITDVYPSESLVRSKNELVEVAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGIL 771
Query: 600 RHVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
V+ +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 772 SKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQ 829
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P + P +K G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 830 DRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPTEFIFHAMSGREGLVDTAVKTAETG 884
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN S++I+QF Y
Sbjct: 885 YMSRRLMKSLEDLSSRYDDTVRN-SSDAIVQFQYG 918
>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
Length = 872
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 179/696 (25%), Positives = 316/696 (45%), Gaps = 74/696 (10%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
+A++ + + +V + K I +E +L G + + +++ + P P I+ +
Sbjct: 9 MAEKRMLTPSDVLNVFKHISDEDITRLGLNGDYARPDWMVITVLPVPPPPVRPSIAINET 68
Query: 166 TMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKS 222
D L +LK + R + G P E ES LQ V Y++ + G ++
Sbjct: 69 ARGEDDLTYKLADILKANGNVQRCDQEGAPAHVINEFESL-LQYHVATYMDNDIAGQPQA 127
Query: 223 SRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
+ S P + +A L+ ++R + K FS+R+VITGD ++++GVP
Sbjct: 128 LQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVP 180
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLR 331
IA+ +T+ E V +NI L ELV N D LR + G L+
Sbjct: 181 KSIARTLTYPEIVTPYNIQRLSELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQ 240
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD +
Sbjct: 241 YGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEM 300
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQS +AE+ ++ +V Q++S + + + D L ++ + ++ FL+ + Q
Sbjct: 301 NLHVPQSEETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLE--YDQ 358
Query: 451 QLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GD 493
+ + P +P+PA+ K + WT Q++ +P G FD +
Sbjct: 359 VMNILFWVPQWNGIVPQPAILKPK--PLWTGKQMVSLTIPSGIFLQRFDEGTTWLSPKDN 416
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
LI K E++ G D+ T+ S ++ +I EKGP+ FF ++Q ++ L +GFS
Sbjct: 417 GMLIAKGEIVYGAVDKATVGSTGGGLIHTIMREKGPQVCCNFFGAVQKVVNFWLLHNGFS 476
Query: 554 VSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNEL---VDLQIENHIRHVKMLV 606
+ + D A + +I I QA+ + + QN+L + + K++V
Sbjct: 477 IGIGDTIADSATMRDITNAISEAKQAVAGFIEE--AHQNKLKQAAGMTLRETFEQ-KVMV 533
Query: 607 A-------------KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
A + + + + ++ S S + + Q + +G Q+ + GK
Sbjct: 534 ALNEARDQAGKSSQVSLTEKNNVKQMVVSGSKGSFINISQMSACVGQQVVE-GKRIPFGF 592
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HF + D P ++ G I+ + GL P E H+++ RE ++ ++ +E
Sbjct: 593 ADRSLPHFTK----DDFGPESR-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 647
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 648 GYIQRRLVKALEDIMVQYDGTTRNSLGD-IIQFLYG 682
>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
Length = 872
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 161/637 (25%), Positives = 276/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLTYPEIVTPYNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSHETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ R WT QIL +P G FD +
Sbjct: 361 NMLYWIPNWNGIIPPPAV--VRPKPLWTGKQILSMAIPKGIHLQRFDDGTNLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE------------------- 596
+ D + +I IQ + Q ++D Q+
Sbjct: 479 IGDTIADPETMKDITITIQEA------KDKVQQIILDAQLNKLDPEPGMTLRESFEHNVS 532
Query: 597 ---NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 533 RVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 592 FSDRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 219/874 (25%), Positives = 353/874 (40%), Gaps = 148/874 (16%)
Query: 6 SSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES-CGTSE 64
SS I+ +I I+FG+ + EI S++ S G P++ G + G E
Sbjct: 2 SSKIVTNRISRIKFGILSPDEIRKMSVTQIFSSEVYDND----GSPIDGGVMDRRLGAIE 57
Query: 65 PGK-----------CEGHFGYIELPIPIYHPSHISELKLTMYA-------FQLQIKNDGV 106
PG+ C GHFG+IEL P+ H ++ + + A ++ + G
Sbjct: 58 PGETCPICGNTRDSCPGHFGHIELAKPVIHAGFAKQILIYLKATCRNCGRLKIPEEEKGE 117
Query: 107 AQRLLSSCCEV----------------------------------------------KEM 120
RLLS E+ + +
Sbjct: 118 YLRLLSDLQELGAPYLIKRFHEYIRRRASTADTCPHCGAKQYKVKLEKPHTFYEQTERGL 177
Query: 121 LKRIPEETRKKLAG--------KGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMS 168
LK P E R +L G P D +L LPVPP + P + S
Sbjct: 178 LKLTPSEVRGRLEKISNDDVKLLGGDPNDTRPEWMVLTVLPVPPRSVR-PSVLLETGIRS 236
Query: 169 SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG-TAKSSRD 225
D L +++ +R G E E LQ + Y EV G R
Sbjct: 237 EDDLTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHITTYFDNEVPGLPVAKHRS 296
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
G++Q + +R K FS+R+VI+ D +NE+GVP ++A+ +
Sbjct: 297 GKTLKGIAQRLKGKEGRFRNNLRG----KRVDFSARTVISPDPSLSINEVGVPEDVAKIL 352
Query: 286 TFEERVNVHNINYLQELVDNKL-------CLTYSDGSS-SYSLREGSKGHTFLRPGQVVH 337
T ERV NI +++LV N + DG S + L G +V
Sbjct: 353 TIPERVTPWNIEEMRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLESGFIVE 412
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R +MDGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQ
Sbjct: 413 RHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQ 472
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL--AM 454
S A+AE L VE+ +L+ G + D + ++ K LDK L +
Sbjct: 473 SEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSST 532
Query: 455 FALSPLPRPALSKARCSARWTALQILQSVLPPGFD-------------SCGDR------- 494
LP PA+ K R A WT Q++ LP F+ C D
Sbjct: 533 GYKGELPEPAILKPR--ALWTGKQLVSLFLPKDFNYKRNSKIGSAAALRCIDEDCPHDSL 590
Query: 495 YLIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+I+ +L+G D+ +I E +V + E G + F D + + + G +
Sbjct: 591 VIIRNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKYGLT 650
Query: 554 VSLEDFSLSKAA-------LWNIQKEIQALYS------LLYHRMST-----QNELVDLQI 595
+S +L + A + +KE++ L S LL T ++E++D+
Sbjct: 651 MSYTHLTLPEEARNRLSEIIAGKKKEVEELISKYKRGELLARPGKTVEETLEDEIIDILS 710
Query: 596 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
+ + V ++ + + + + + + + Q A LG Q + RGK ++ +
Sbjct: 711 KKLLDSVAEVITPYFTLVNPVVIMARTGARGNPVNLTQMAALLG-QQTVRGKRLTRGYLG 769
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
SHF+ P DL P A+ G I F HGL+P E H+ + RE ++ ++ S+ G
Sbjct: 770 RALSHFK---PEDLG-PEAR-GFIASGFVHGLNPVEMFFHAAAGREGLIDTAVRTSQSGY 824
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L+D+ + YDG+VR + + I+Q Y
Sbjct: 825 MQRRLINALQDLRVEYDGSVR-LTTGEIVQLLYG 857
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 168/641 (26%), Positives = 284/641 (44%), Gaps = 75/641 (11%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 264 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 322
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 323 AGQPRALQKSGRPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 375
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 376 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 435
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R ++DGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 436 AQISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNAD 495
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L K+ + F+
Sbjct: 496 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFI 555
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP--------------PG 487
DK Q + ++ + +P+PA+ K R RWT QI+ V+P P
Sbjct: 556 DKELVQNIMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPAEISLYSKEDKLDNPK 613
Query: 488 FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
D+ LI+ +++ G + + + I+ + E GP+ + F + +Q ++ L
Sbjct: 614 HDAG---MLIQSGQLIYGLLKKKYVGAAAGGIIHLCYNELGPDGAMAFLNGVQQVVTYWL 670
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIEN 597
G S+ + D K + IQ I + R++ Q NEL V E+
Sbjct: 671 LNTGHSIGIGDTIPDKETIDKIQAHIDE-HKAEVARLTAQATANELEALPGMNVRATFES 729
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSK---------VVQQAGFLGLQLSDRGKF 648
+ + + +A+ +ST L DS + +S+ + Q +G Q+ + GK
Sbjct: 730 KV-SLALNMARDQAGTSTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVE-GKR 787
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
HF + D P A+ G ++ + GL P E H+++ RE ++ ++
Sbjct: 788 IPFGFKYRTLPHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 842
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 843 KTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 882
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 17 IRFGLATQKEICTASIS----------DCSISHASQLANPFLGLPLEFGKCESCGTSEP- 65
I+FG+ + +EI S++ + + L +P LG KC++C ++P
Sbjct: 19 IQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDRQFKCKTC--AQPM 76
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I ++K
Sbjct: 77 SECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
Length = 871
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLSDIMKANINVQKLEMDGSPQHVINEFESL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGDRLDLRYNKRAGDIVLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE++ + +V Q++S + + + D L ++ M + F++ + Q + +
Sbjct: 306 QSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE--YDQMMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FD------SCGDR-YLIK 498
P +P+PA+ K + W+ Q++ +P G FD S D L+
Sbjct: 364 YWIPEWDGVIPQPAILKPK--PLWSGKQMMSMTIPKGINLQRFDEGTTLLSPNDNGMLVI 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G D+ T+ + ++ ++ EKG + + F S+Q ++ L +GFS+ + D
Sbjct: 422 NGEIMFGVVDKKTVGATNGGLIHTVMREKGSRQCADLFGSIQKVVNFWLLHNGFSIGIGD 481
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHIRHV 602
+++K + + E Q H M+ + D I N R
Sbjct: 482 TIADTETMKEITEAIAIAKEKVEEVTDEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDK 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ + S + + Q + +G Q S GK + + HF
Sbjct: 542 AGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFGDRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ D P +K G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 601 AK----DDYSPQSK-GFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN N IIQF Y
Sbjct: 656 KALEDIMVHYDGTTRNSLGN-IIQFIYG 682
>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1468
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 174/693 (25%), Positives = 295/693 (42%), Gaps = 101/693 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +++P PP C+ DG S + D L +++ ++R++
Sbjct: 249 GINPAEGRPEMFLWQFVPAPPICIRPSVQQDGGS--NEDDITTKLAEIVSMASLLRAALH 306
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + + LQL + Y L+ G K+ R R Q
Sbjct: 307 KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQG--------- 357
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++E+ VP +A+ +T+ ERV NI L++ V
Sbjct: 358 -RFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVI 416
Query: 305 N-------KLCLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTTH 355
N + D + SL+ + + FL+ G VV R + DGD V NR P+ H
Sbjct: 417 NGPNVHPGAQQIIKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLH 476
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+ L
Sbjct: 477 KLSIMSHYAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNL 536
Query: 416 LSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+ NG + D + + ++ K+ F D+ + M+ + LP PA+ K +
Sbjct: 537 STPKNGEPIISATQDFITAAYLLSNKENFFDRKTFTNICMYMVDANLHLQLPDPAILKPQ 596
Query: 470 CSARWTALQILQ------------------------SVLPPGFDS---CGDRYL-IKKSE 501
A WT Q+ S++P GF + D +L I+ SE
Sbjct: 597 --ALWTGKQVFSVLMRPNKQDNILVNVDAKCRDFVPSMVPKGFANDMEANDGWLVIRNSE 654
Query: 502 VLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF- 559
V+ G D+ T+ S + I I + GP+ + + L L L GFS+ + D
Sbjct: 655 VMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVY 714
Query: 560 ----------SLSKAALWNIQKEIQALYSLLYHRMS--TQNELVDLQIENHIRHVKMLVA 607
L AA ++ I++ + + + + E ++ ++ + V+
Sbjct: 715 PSAELNKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAG 774
Query: 608 KFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
K L+ SS+ + +S S + V Q +G Q+ + F +TL
Sbjct: 775 KECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTL-----P 829
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF P P AK G + FF GL PYE + H++S RE +V ++ +E G + +
Sbjct: 830 HF----PKHSKQPPAK-GFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRR 884
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
LM L D+ YD TVR I+QF + +
Sbjct: 885 LMKSLEDLSTQYDDTVR-TSGGGIVQFQFGADG 916
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 17 IRFGLATQKEICTASISDCS-------------ISHASQLANPFLGLPLEFGKCESCGTS 63
++FG+ + ++I + + S I H +P LG + G+C++C
Sbjct: 22 LKFGIQSNQDIVNQGVIEVSNKMLYNVDAGRTAIPHGP--VDPRLGTSSKSGRCDTCDKG 79
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
C GHFG++ LP+P + HI LKL + Q K R+L + E ++ LK
Sbjct: 80 LQ-DCNGHFGHVRLPLPAF---HIGYLKLIIMILQNVCK---TCARVLLTDAERRQFLKE 132
Query: 124 I 124
+
Sbjct: 133 L 133
>gi|432330443|ref|YP_007248586.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
gi|432137152|gb|AGB02079.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
Length = 879
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 189/762 (24%), Positives = 323/762 (42%), Gaps = 99/762 (12%)
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
H G +L I P+ SE+ + DG + +++ L++IP E
Sbjct: 140 HCGEQQLKINFEKPTTFSEVMV----------EDGKKVEHKLTPADIRARLEKIPNE--- 186
Query: 131 KLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEII 186
L G P + IL LPVPP + I + DL+ ++ +
Sbjct: 187 DLIPLGINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDDLTHKLVDIIRINQRFK 246
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
+ +G P +++ LQ V YL EV G + S P T L
Sbjct: 247 ENQDAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR-------SGRPLKTLSQRL 298
Query: 245 E----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
+ + R K FSSR+VI+ D V+++GVP +A +T RV +NI L+
Sbjct: 299 KGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVSQVGVPRAVANEMTVPVRVTPYNIEELR 358
Query: 301 ELVDN---------KLCLTYSDGSSSYSLREGSKG----HTFLRPGQVVHRRIMDGDTVF 347
++V N Y + LR G+ + PG V R++ DGD V
Sbjct: 359 QIVRNGPTRPDVNAPCGANYVIRPDNRRLRLGADNLDTVADMIEPGYTVERQLRDGDVVL 418
Query: 348 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
NR P+ H+ S+ A V V + T ++NP +C P +ADFDGD +++ PQ+ A+AE
Sbjct: 419 FNRQPSLHRMSIMAHRVKVMEGRTFRLNPAVCPPYNADFDGDEMNMHVPQTEEARAEASI 478
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMF-----ALSPLPR 462
L SV++ +LS G + D + + ++ + FT++ A++ + +P
Sbjct: 479 LISVQENILSPRFGGPIIGGIHDHVSGIFMLTHDL---RWFTKEQALYLLRYTGIERMPE 535
Query: 463 PALSKARCSARWTALQILQSVLPPGF------------DSCG------DRYL-IKKSEVL 503
P + W+ Q+ +LP D+C D Y+ I ++
Sbjct: 536 PGKVEDGVEY-WSNKQVFSVILPENLNMVFHASSCQNCDTCKKEVCERDAYVRIIDGKLE 594
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G D+ I + ++V I ++G + +F D L + + DGFS ++D LSK
Sbjct: 595 SGTIDKKAIGAFDGQVVNRIIRQQGMKRATKFIDDFTKLSIRGIMLDGFSFGIDDEDLSK 654
Query: 564 A-----------ALWNIQKEIQALYSLLYHRMS--TQNELVDLQIENHIRHVKMLVAKFI 610
A ++++ I+ M T E +++QI + + +
Sbjct: 655 TEYGQIDEVLKNAALDVERRIRIYEDGQLEPMPGRTVEETLEMQIMQVLGKARDQTGQIA 714
Query: 611 LKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ LG + S + ++ + Q AG +G Q S RG+ + + HF++
Sbjct: 715 GRHLGLGNSAVVMAVSGARGSMLNLTQMAGCIG-QQSVRGERIVRGYDDRTLPHFKK--- 770
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ + +G I+ + GL+P E H+I RE +V ++ S+ G L + ++ L+D
Sbjct: 771 --GDRGSDAHGFIQHSYKGGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQD 828
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVNARK-SHSLFPAGEPVGV 767
+ + YDGTVR+ IIQF+Y + + S F G+PV V
Sbjct: 829 LKVAYDGTVRST-GGKIIQFEYGEDGTDPTKSAF--GDPVDV 867
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 182/729 (24%), Positives = 308/729 (42%), Gaps = 93/729 (12%)
Query: 87 ISELKLTMYAFQLQIKNDGVAQRLLSSCCE-VKEMLKRIPEETRKKLA-GKGYFPQDGYI 144
I+E K+T Q + A+R E V +LKR+ +E + + Y D I
Sbjct: 107 IAEYKMTKKKSDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKYARPDWMI 166
Query: 145 LEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESN 204
L+ LP+PP + + D S DL+ + + + R R+G P E +
Sbjct: 167 LQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEF-AQ 225
Query: 205 DLQLAVGQYL------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGF 258
LQ + Y + R T +S R + + + KA ++R + K F
Sbjct: 226 LLQFHIATYFDNELPGQPRATQRSGRPIKSIC-------TRLKAKEGRIRGNLMGKRVDF 278
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD-------------- 304
S+R+VIT D ++E+GVP+ IA +T+ E V +NI L+ELVD
Sbjct: 279 SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKY 338
Query: 305 ------NKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+L L Y SS + L G K V R + DGD V NR P+ HK S
Sbjct: 339 IIRDDGQRLDLRYLKKSSDHHLELGYK----------VERHLNDGDFVLFNRQPSLHKMS 388
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ + + T ++N + P +ADFDGD +++ PQS AEV EL V K ++S
Sbjct: 389 IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETXAEVXELMMVPKCIVSP 448
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D LL + + K+ F++K + M+ +P P + K R W
Sbjct: 449 QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILKPR--PLW 506
Query: 475 TALQILQSVLPP----------------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVIN 517
T Q+ ++P GF + GD + I++ E+L G + T+ +
Sbjct: 507 TGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKKTLGTSTG 566
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ I+ E GP+ +F Q L+ L +GFS+ + D + + I + I
Sbjct: 567 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAK 626
Query: 578 SLLYHRMSTQNE---------LVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ + + E + EN + V K + +S+ L ++
Sbjct: 627 NEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMV 686
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ S + + Q +G Q + GK ++ HF + +Y G ++
Sbjct: 687 TAGSKGSFINISQMTACVG-QQNVEGKRIPYGFIDRTLPHFTKD-----DYGPESRGFVE 740
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN
Sbjct: 741 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 800
Query: 741 NSIIQFDYA 749
+ +IQF Y
Sbjct: 801 D-VIQFLYG 808
>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 960
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 193/787 (24%), Positives = 329/787 (41%), Gaps = 125/787 (15%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCL 155
Q K D R+ + K +L++I +ET + L G P I +PVPP C+
Sbjct: 86 QKKVDNKLPRVPLYADQAKSILEKITDETCRLL---GLNPDSSRPEWMIFTVIPVPPPCM 142
Query: 156 SVP---DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQ 212
D+++G DL+ ML +++ ++ + S E +E LQ+ +
Sbjct: 143 RPSVHIDVANG-GKGEDDLT-HMLTNIIRYNNLLGKNESSKTAIEYKE----QLQIHITT 196
Query: 213 YL--EVRGTA----KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITG 266
Y+ EV G K R + + ++ K ++R + K FS+R+VITG
Sbjct: 197 YIDNEVSGVPPALQKGGRMIKSL-------SARLKGKEGRIRGHLMGKRVDFSARTVITG 249
Query: 267 DAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR----- 321
D + + E+GVP +A+ +TF ERV +N++ +Q LV+N Y + R
Sbjct: 250 DPHISIEEVGVPLSVAKTLTFPERVTSYNLDRMQALVNN--AKNYPGARYVINERGRRID 307
Query: 322 -EGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
E +K + G +V R ++ GDTV NR P+ HK S+ A V V + ++N +C
Sbjct: 308 LEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLHKMSMMAHIVRVMPYSSFRLNVNVCA 367
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMF 439
P +ADFDGD ++L PQS AE+ L V L+S + L DAL + K+
Sbjct: 368 PYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTM 427
Query: 440 KKYFLDKAFTQQLAMF--ALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGD---- 493
+ F++ L M +P PA+ K WT QI+ L P D G+
Sbjct: 428 RDTFVNFEDMMDLVMCLKEFPVIPPPAIFKP--IPLWTGKQIISLCL-PDIDLTGNTLTH 484
Query: 494 ----------------------------------RYLIKKSEVLKGDFDRDTIPSVINEI 519
R LI+ ++ G + T+ + I
Sbjct: 485 ADHEDIFRSTTKDLNETCTRKAESEFYSATPTDSRVLIQSGIIVHGYLCKKTVGASSGGI 544
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK-----------AALWN 568
V I+ + GP +F D+ ++ L GFSV + D +S+ L
Sbjct: 545 VHIIYNDHGPRAACDFIDNSSRIVNAWLTNSGFSVGIGDALVSEITHAVFSSTIDTQLHK 604
Query: 569 IQKEIQALYSLLYH------------RMSTQNELVDLQIENHIRHVKMLVAKFILKS--- 613
+QK I++ YH + +N++V L + + K L S
Sbjct: 605 VQKTIES-----YHANELKPEGNFDCEQTKENQIVGL-----LAKARDSAGKTTLISGHP 654
Query: 614 -STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYP 672
+ L ++++ S +V + Q + +G Q+ + GK + HF + ++
Sbjct: 655 DNNLKQMVEAGSKGSVLNICQVSACVGQQMVE-GKRIPFGFKDRTLPHFTK-----YDHS 708
Query: 673 TAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD 732
A G ++ F GL P E H++ RE ++ ++ +E G + + L+ L D+ + D
Sbjct: 709 PAARGFVRNSFVKGLTPSELFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDITVKSD 768
Query: 733 GTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSW 792
GTVRN + IIQF Y + ++ P +L+ + + + Y +
Sbjct: 769 GTVRN-SRDDIIQFYYGEDGFDGTAIEYQTFPTMMLSESELYSRYYNGIDSEYAQLKKDQ 827
Query: 793 ELMKEIL 799
EL++ +L
Sbjct: 828 ELLRRVL 834
>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
Length = 1000
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 177/682 (25%), Positives = 298/682 (43%), Gaps = 66/682 (9%)
Query: 116 EVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDIS----DGVSTMSSD 170
+V + K I +E ++ K Y + IL + VPP + P IS G D
Sbjct: 134 DVLNIFKHISDEDILRMGLSKDYARPEWMILTCMAVPPPPVR-PSISVEGMGGGMRGEDD 192
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDA 228
L+ + + V + R + G+P E ES LQ V +++ + G ++ +
Sbjct: 193 LTFKLSDIIKANVNLRRCEQEGSPAHVVAEFESL-LQFHVATFMDNDIAGQPQAVQK--- 248
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 249 ----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 304
Query: 285 ITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVH 337
+T+ E V +NI+ L +LV N C+ G G L+ G V
Sbjct: 305 LTYPETVTPYNIHRLHQLVRNGPNDHPGAKCVIRDTGERIDLRHHKRAGEISLQYGWKVE 364
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R I+DGD + NR P+ HK S+ + V T +++ + P +ADFDGD ++L PQ
Sbjct: 365 RHIIDGDFIIFNRQPSLHKESMMGHRIRVLPYSTFRLHLSVTSPYNADFDGDEMNLHVPQ 424
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFA 456
S +AEV +L V Q++S + + D L + M ++ FLD+ + ++
Sbjct: 425 SEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKMTRRDVFLDRNAVMNILLWV 484
Query: 457 L---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC---------GDRYLIKKSEVLK 504
+P PA+ K R ARWT Q++ ++PP + D + E+L
Sbjct: 485 PGWDGVIPPPAIIKPR--ARWTGKQVISLIIPPNINLVKTSDMPPLTDDGLWVSNGELLF 542
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + + + ++ I+ EKG + + FF+ Q + L +GFS+ + D
Sbjct: 543 GLLSKKVVGASQGGLIHIIYNEKGSKTCMGFFNGCQLVTNYWLLHNGFSIGIGDTIPDAK 602
Query: 565 ALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI------LKSSTL 616
+ IQ+ + A + + R + +N L L N + V+K + S+T
Sbjct: 603 TVKRIQEIVDAKKAEVEEVTRKAQENTLEALPGMNIRETFENKVSKSLNGARDEAGSATE 662
Query: 617 GYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
L D S S + + Q + +G Q S GK HF +
Sbjct: 663 KSLKDLNNAIQMARSGSKGSNINISQMSAVVG-QQSVEGKRIPFGFKYRTLPHFTKD--- 718
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV
Sbjct: 719 --DYSAESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 776
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN + I+ F Y
Sbjct: 777 MAKYDGTVRNSLGD-IVTFCYG 797
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 176/699 (25%), Positives = 299/699 (42%), Gaps = 72/699 (10%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGV 164
V ++ + S V +LKRI +E L Y D IL+ LP+PP + + D
Sbjct: 206 VERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRG 218
S DL+ + + + + R+G P E + LQ + Y + R
Sbjct: 266 SRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIITEF-AQLLQFHIATYFDNDLPGQPRA 324
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
T +S R + + S KA ++R + K FS+R+VIT D ++++GVP
Sbjct: 325 TQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVP 377
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHT 328
+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 378 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQ 437
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDG
Sbjct: 438 HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 497
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA 447
D +++ PQS +AEVLEL V K ++S + + D LL + + K+ ++K
Sbjct: 498 DEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKD 557
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGF 488
+ M+ +P PA+ + R WT Q+ ++P GF
Sbjct: 558 VFMNILMWWEDFDGKVPAPAILRPR--PIWTGKQVFNLIIPKLINLIRFSAWHAETESGF 615
Query: 489 DSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
+ GD + I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 616 ITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 675
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENH 598
+GFS+ + D A + I + I + + + E + EN
Sbjct: 676 LQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENR 735
Query: 599 IRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS 650
+ V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 736 VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIP 794
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
V+ HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 795 FGFVDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 849
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 850 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 179/698 (25%), Positives = 301/698 (43%), Gaps = 72/698 (10%)
Query: 113 SCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S +V +LKRI +E L Y D IL+ LP+PP + + D + DL
Sbjct: 216 SAEKVLSILKRISDEECTLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDL 275
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRD 225
+ + + + R ++G P E + LQ + Y + R T +S R
Sbjct: 276 THQLAMIIRHNNNLKRQEQNGAPTHIINEF-AQLLQFHIATYFDNDLPGQPRATQRSGRP 334
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
+ + + Q KA ++R + K FS+R+VIT D ++E+GVP+ IA +
Sbjct: 335 IKS---ICQ----RLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNL 387
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V +N+ L+ELV+ + Y +RE + L G
Sbjct: 388 TYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKKSSDRHLELGYK 447
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 448 VERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 507
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AEVLEL V K ++S + + + D LL KV + F++K + M
Sbjct: 508 PQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILM 567
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGDRY 495
+ +P P + K R WT QI ++P + S GD
Sbjct: 568 WWEEFDGKIPIPTILKPR--PLWTGKQIFSLIIPKQINLMRQAFWHPDGEYGDLSPGDTQ 625
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+ I+K EV+ G + T+ + ++ I+ E GP+ +F Q L+ L GFS+
Sbjct: 626 VRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSI 685
Query: 555 SLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQ--------IENHIRHV--- 602
+ D A + I + I +A + + Q++ ++ Q EN + +
Sbjct: 686 GIGDTIADAATMEKINETITKAKHDVKDLIKKAQDKQLEAQPGRTMKESFENRVNGILNK 745
Query: 603 -----KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + +S+ L ++ + S + Q +G Q + GK V+
Sbjct: 746 ARDDAGASAQKSLAESNNLKAMVTAGSKGTFINISQMTACVG-QQNVEGKRIPYGFVDRT 804
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G +
Sbjct: 805 LPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 859
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS 755
+ L+ + DV++ YDGTVRN + +IQF Y + S
Sbjct: 860 RRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMDS 896
Score = 44.3 bits (103), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCG 61
++ ++FG+ + EI ++ C I + L++P LG KCE+C
Sbjct: 13 ARVKTVQFGILSPDEIRQMAV--CKIESSETYDRGKPKIGGLSDPRLGTIDRHTKCETCA 70
Query: 62 TSEPGKCEGHFGYIELPIPIYH 83
S +C GHFGY+EL P++H
Sbjct: 71 GSM-TECPGHFGYLELAKPMFH 91
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 167/626 (26%), Positives = 279/626 (44%), Gaps = 63/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + ++ G+P + E ES LQ V Y++ + G +S +
Sbjct: 275 DLTYKLAEIIRANGNVRQAQSEGSPAHVALEFESL-LQYHVATYMDNDIAGQPQSLQK-- 331
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R+ + K FS+R+VITGD ++E+GVP IA+
Sbjct: 332 -----SGRPVKSIRARLKGKEGRLRSNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV N + +DGS G L G V
Sbjct: 387 ILTYPETVTPYNIGKLHQLVQNGPNDHPGAKYIIRNDGSRIDLRHHKRAGAISLEYGNKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
Q+ +AEV +L V ++S + + D L + K+ + FL K + ++
Sbjct: 507 QTEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDVFLTKETMMNVLLW 566
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC------------GDRYLIKKS 500
S +P+PA+ K R RWT Q++ ++P + D LI +
Sbjct: 567 VPSWDGVIPQPAIIKPR--PRWTGKQLISMIIPKEVNLHTANDNREDAPLKDDGLLISEG 624
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E+L G + + + +V IF E G E FF Q ++ L+ +GFS+ + D
Sbjct: 625 ELLFGLITKKVVGATSGGVVHIIFNELGWLEARNFFTGCQTVVNYWLYHNGFSIGIGDTI 684
Query: 561 LSKAALWNIQKEIQALYSLLYHRM--STQNELVDLQIENHIRHVKMLVAKFI------LK 612
KA + I+ ++ ++ + +T N+L L N + LV+K +
Sbjct: 685 PDKATIDKIEGAVKEQKDIVDGLVLEATTNKLESLPGMNVRETFESLVSKALNTARDKAG 744
Query: 613 SSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
+ T L D S S + + Q +G Q S GK HF +
Sbjct: 745 TRTEQSLKDINNAVIMARSGSKGSTINISQMTALVG-QQSVEGKRIPFGFKYRTLPHFTK 803
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 804 D-----DYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 858
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGTVRN + I+QF Y
Sbjct: 859 LEDVMVKYDGTVRNSLGD-IVQFIYG 883
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ L +P LG KC +C
Sbjct: 19 IQFGLLSPEEIKNMSVAHILYPETMDEGKMKPRDQGLNDPRLGSIDRGFKCATCDAGM-A 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP + ++K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFLKKIK 102
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 151/546 (27%), Positives = 255/546 (46%), Gaps = 53/546 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++++GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 148 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTQLVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I DGD NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIDDGDPXLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L V Q++S
Sbjct: 268 MMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIISP 327
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSA 472
+ + + D L ++ + K+ F++ F Q + + P +P+PA+ K +
Sbjct: 328 QSNKPVMGIVQDTLCGIRKLTKRDTFVE--FDQVMNLLFWIPDWDGVVPQPAVLKPK--P 383
Query: 473 RWTALQILQSVLPPG-----FDSCG-------DRYLIKKSEVLKGDFDRDTIPSVINEIV 520
WT QI+ +P G FD + LI K EV+ G D+ T+ + ++
Sbjct: 384 LWTGKQIVSLCIPKGIFMQRFDDQNPITSPKDNGMLIAKGEVIYGVVDKKTVGATAGGLI 443
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
+I EKGP+ FF +LQ ++ L +GFS+ + D A + +I I + +
Sbjct: 444 HTIMREKGPQICCNFFGNLQKVVNYWLLHNGFSIGIGDTIADAATMKDITNTIAEAKNKV 503
Query: 581 YHRM--STQNELVD--------------LQIENHIRHVKMLVAKFILKS-STLGYLIDSK 623
+ + N+L ++ N R A+ LK + + ++ +
Sbjct: 504 QEIILEAQANKLAPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAG 563
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q + +G Q+ + GK + HF + D + P +K G I+ +
Sbjct: 564 SKGSFINISQMSACVGQQIVE-GKRIPFGFQDRSLPHFTK----DDHSPESK-GFIENSY 617
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H+++ RE ++ ++ +E G + + L+ L DV++ YDGT RN + +
Sbjct: 618 LRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGD-V 676
Query: 744 IQFDYA 749
IQF Y
Sbjct: 677 IQFVYG 682
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 175/685 (25%), Positives = 297/685 (43%), Gaps = 72/685 (10%)
Query: 120 MLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI +E + L F + D IL+ LP+PP + + D + DL+ +
Sbjct: 239 ILKRISDEECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 298
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGV 232
+ + R ++G P E + LQ + Y + R T +S R + + +
Sbjct: 299 IRHNNNLKRQEQNGAPTHIINEF-TQLLQFHIATYFDNDLPGQPRATQRSGRPIKS---I 354
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 355 CQ----RLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 410
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMD 342
+N+ L+ELV+ + Y +RE + L G V R + D
Sbjct: 411 PYNLERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCD 470
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +
Sbjct: 471 GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 530
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---S 458
AEV EL V K ++S + + + D LL KV + F++K + M+
Sbjct: 531 AEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDG 590
Query: 459 PLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSE 501
+P PA+ K R WT QI ++P G +S GD + I+K E
Sbjct: 591 KVPTPAIVKPR--PIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGE 648
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+L G + T+ + ++ I+ E GP+ +F Q L+ L GFS+ + D
Sbjct: 649 LLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTIA 708
Query: 562 SKAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV--------KM 604
A + I + E++ L + + S + EN + V
Sbjct: 709 DSATMEKINETIFKAKNEVKDLIKMAQEKQLESQPGRTMMESFENRVNQVLNRARDEAGS 768
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
K + +S+ + ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 769 SAQKSLSESNNVKAMVTAGSKGSFINISQMIACVG-QQNVEGKRIPFGFIDRTLPHFTKD 827
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 828 -----DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 882
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV++ YDGTVRN + +IQF Y
Sbjct: 883 EDVMVKYDGTVRNSLGD-VIQFLYG 906
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + EI S+ C I + L++P LG KCE+CG S
Sbjct: 18 VQFGLMSPDEIRQMSV--CKIESSETYDRGKPKSGGLSDPRLGTIDRQTKCETCGGSM-A 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG++EL P++H
Sbjct: 75 ECPGHFGHLELAKPMFH 91
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 172/636 (27%), Positives = 272/636 (42%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 275 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD + E+GVP IA+
Sbjct: 334 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ LV N D LR + G L G V
Sbjct: 387 TLTYPEVVTPYNIEKLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + M+
Sbjct: 507 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMW 566
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-RY 495
+P PA+ K R RWT Q++ LP G F D
Sbjct: 567 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGL 624
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E G + FF+ Q ++ L +GFS+
Sbjct: 625 LIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIG 684
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + + I+ KE++++ + +T N L L N + V++
Sbjct: 685 IGDTIPDELTIQRIENCVRNRKKEVESITA-----SATDNTLEPLPGMNVRETFESKVSR 739
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 740 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 798
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 799 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 853
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 854 GYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 888
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YH ++++K
Sbjct: 78 ECPGHFGHIELATPVYHIGFLTKIK 102
>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
[Botryotinia fuckeliana]
Length = 1442
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 172/689 (24%), Positives = 293/689 (42%), Gaps = 93/689 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +++P PP C+ DG S + D L +++ ++R++
Sbjct: 252 GINPAEGRPEMFLWQFVPAPPICIRPSVQQDGGS--NEDDITTKLAEIVSMASLLRAALH 309
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + + LQL + Y L+ G K+ R R Q
Sbjct: 310 KGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++E+ VP +A+ +T+ ERV NI L++ V
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVI 419
Query: 305 N-------KLCLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTTH 355
N + D + SL+ + + FL+ G VV R + DGD V NR P+ H
Sbjct: 420 NGPNVHPGAQQIIKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLH 479
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+ L
Sbjct: 480 KLSIMSHYAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNL 539
Query: 416 LSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALSP-----LPRPALSKAR 469
+ NG + D + + ++ K+ F D+ + M+ + LP PA+ K +
Sbjct: 540 STPKNGEPIISATQDFITAAYLLSNKENFFDRKTFTNICMYMVDANLHLQLPDPAILKPQ 599
Query: 470 CSARWTALQILQ------------------------SVLPPGFDS---CGDRYL-IKKSE 501
A WT Q+ S++P GF + D +L I+ SE
Sbjct: 600 --ALWTGKQVFSVLMRPNKQDNILVNVDAKCRDFVPSMVPKGFANDMEANDGWLVIRNSE 657
Query: 502 VLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF- 559
V+ G D+ T+ S + I I + GP+ + + L L L GFS+ + D
Sbjct: 658 VMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISDVY 717
Query: 560 ----------SLSKAALWNIQKEIQALYSLLYHRMS--TQNELVDLQIENHIRHVKMLVA 607
L AA ++ I++ + + + + E ++ ++ + V+
Sbjct: 718 PSAELNKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRGAAG 777
Query: 608 KFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
K L+ SS+ + +S S + V Q +G Q+ G + + HF
Sbjct: 778 KECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIG-GSRVQEGFQDRTLPHF-- 834
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
P P AK G + FF GL PYE + H++S RE +V ++ +E G + + LM
Sbjct: 835 --PKHSKQPPAK-GFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKS 891
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
L D+ YD TVR I+QF + +
Sbjct: 892 LEDLSTQYDDTVR-TSGGGIVQFQFGADG 919
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 17 IRFGLATQKEICTASISDCS-------------ISHASQLANPFLGLPLEFGKCESCGTS 63
++FG+ + ++I + + S I H +P LG + G+C++C
Sbjct: 25 LKFGIQSNQDIVNQGVIEVSNKMLYNVDAGRTAIPHGP--VDPRLGTSSKSGRCDTCDKG 82
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
C GHFG++ LP+P + HI LKL + Q K R+L + E ++ LK
Sbjct: 83 LQ-DCNGHFGHVRLPLPAF---HIGYLKLIIMILQNVCK---TCARVLLTDAERRQFLKE 135
Query: 124 I 124
+
Sbjct: 136 L 136
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 186/723 (25%), Positives = 315/723 (43%), Gaps = 80/723 (11%)
Query: 83 HPSHISELKLTMYAFQLQIKNDGVAQRL---LSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
HP I + L +YA + + +G+ + + L + + +LK IPE+ K+ +
Sbjct: 182 HPD-IRKKALQLYAKVEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYA 240
Query: 140 QDGYILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPN 195
+ +++ + P P IS DG S M S DL+ + + + ++ G PN
Sbjct: 241 RPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPN 300
Query: 196 FESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLE---- 245
E E LQ V Y++ R KS R P + +A L+
Sbjct: 301 HICTEFEEL-LQYHVATYMDNDIASIPRSLQKSGR-----------PIKSIRARLKGKEG 348
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V HNI+ L + V N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVN 408
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ +DG+ ++G T L GQ V R ++ GD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 MMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D L + K+ + FL K + ++ +P+PA+ + R RW
Sbjct: 529 QRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPR--PRW 586
Query: 475 TALQILQSVLP------PGFD---SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
T QI+ V+P G D D LI+ E++ G + + + I+ +
Sbjct: 587 TGKQIISMVIPDFVTTHQGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYN 646
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS 585
E+GP + F + Q ++ L +G S+ + D + IQ I + +
Sbjct: 647 EQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHIN-------EQKA 699
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSK-----------VVQQ 634
EL DL N + + + + +S L ++ + + + +
Sbjct: 700 EVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSR 759
Query: 635 AGFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYPM---DLNYPTAKYGLIKGCFFHG 686
+G G + +S + +VE F R P D P A+ G ++ + G
Sbjct: 760 SGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEAR-GFVENSYLRG 818
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV YDGTVRN + IIQF
Sbjct: 819 LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGD-IIQF 877
Query: 747 DYA 749
Y
Sbjct: 878 IYG 880
Score = 47.4 bits (111), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FG+ +EI S+ + L +P LG KC++C ++
Sbjct: 19 IQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDRQYKCKTC-NNDMN 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I++ K
Sbjct: 78 NCPGHFGHIELAKPVYHPGFINKTK 102
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 188/744 (25%), Positives = 318/744 (42%), Gaps = 73/744 (9%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIK-NDGVAQRLLSSCCEVKEM 120
T EP K G G + I + ++E K Q + + V ++ + S V +
Sbjct: 160 TDEPIKKRGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNV 219
Query: 121 LKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
LKRI +E L Y D IL+ LPVPP + + D S DL+ + +
Sbjct: 220 LKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMII 279
Query: 180 LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGVS 233
+ R R+G P E + LQ + Y + R T +S R + +
Sbjct: 280 RHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNDLPGQPRATQRSGRPIKSIC--- 335
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 336 ----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTP 391
Query: 294 HNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDG 343
+NI L+ELV+ + Y +RE + L G V R + DG
Sbjct: 392 YNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDG 451
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +A
Sbjct: 452 DFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRA 511
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SP 459
EVLEL V K ++S + + + D LL + + K+ ++K + M+
Sbjct: 512 EVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGK 571
Query: 460 LPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSEV 502
+P P + K R WT Q+ ++P GF + GD + I+K E+
Sbjct: 572 IPAPTILKPR--PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGEL 629
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
L G + ++ + ++ I+ E GP+ +F Q L+ L +GFS+ + D
Sbjct: 630 LSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIAD 689
Query: 563 KAALWNIQKEI----QALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKF------- 609
+ + I I A+ L+ H + E +E+ V ++ K
Sbjct: 690 ASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSS 749
Query: 610 ----ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+ +S+ L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 750 AQNSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD- 807
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 808 ----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 863
Query: 726 DVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGTVRN + +IQF Y
Sbjct: 864 DIMVKYDGTVRNSLGD-VIQFLYG 886
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 149/544 (27%), Positives = 244/544 (44%), Gaps = 49/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV+N
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVEN 407
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDGS G L G V R I+DGD + NR P+ HK S
Sbjct: 408 GPNEHPGAKYVVRSDGSRIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNRQPSLHKES 467
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AE++ L V ++S
Sbjct: 468 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIMNLCMVPLNIVSP 527
Query: 419 HNGNLNLQLATDALLSLKVMFKKY-FLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + M ++ F+ K + ++ +P+PA+ K R RW
Sbjct: 528 QRNGPLMGIVQDTLAGVYKMCRRDCFVTKEHLMNILLWVPEWDGVIPQPAILKPR--PRW 585
Query: 475 TALQILQSVLPP---------GFDSC---GDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T Q++ ++P G + D L+ + E++ G + I + I+
Sbjct: 586 TGKQVVSMIIPKIVNLNMPNDGREDAPLKDDGLLVHEGELMYGLMAKKNIGATSGGIIHI 645
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
IF E G + + FF+ Q ++ L +GFS+ + D K+ + I+ I A +
Sbjct: 646 IFNEMGSDAAMAFFNGCQRVVNYWLLHNGFSIGIGDTVPDKSTIAKIEGAIGAQKEEVAK 705
Query: 583 --RMSTQNELVDLQIENHIRHVKMLVAKFI------LKSSTLGYLID---------SKSD 625
M+T N+L L N + V+K + + T G L D S S
Sbjct: 706 LTAMATANQLESLPGMNVRETFESQVSKALNTARDQAGTKTEGSLKDNNNAVTMARSGSK 765
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q +G Q S GK HF + +Y G ++ +
Sbjct: 766 GSTINISQMTALVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLR 819
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+Q
Sbjct: 820 GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQ 878
Query: 746 FDYA 749
F Y
Sbjct: 879 FVYG 882
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
++FGL + +EI S+ C I + L +P LG KC +C +
Sbjct: 19 VQFGLLSPEEIKNMSV--CHILYPETMDETRTKPRDQGLNDPRLGSIDRQFKCATCDQNM 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP + + K
Sbjct: 77 -SECPGHFGHIELAKPVYHPGFLKKTK 102
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 172/636 (27%), Positives = 272/636 (42%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 275 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD + E+GVP IA+
Sbjct: 334 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ LV N D LR + G L G V
Sbjct: 387 TLTYPEVVTPYNIEKLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + M+
Sbjct: 507 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMW 566
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-RY 495
+P PA+ K R RWT Q++ LP G F D
Sbjct: 567 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGL 624
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E G + FF+ Q ++ L +GFS+
Sbjct: 625 LIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIG 684
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + + I+ KE++++ + +T N L L N + V++
Sbjct: 685 IGDTIPDELTIQRIENCVRNRKKEVESITA-----SATDNTLEPLPGMNVRETFESKVSR 739
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 740 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 798
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 799 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 853
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 854 GYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 888
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YH ++++K
Sbjct: 78 ECPGHFGHIELATPVYHIGFLTKIK 102
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 284/628 (45%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 186 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 306 QSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNML 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K + W+ QIL +P G FD + LI
Sbjct: 364 YWVPDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 422 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 481
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + ++ KE QA H M+ + D ++ N R
Sbjct: 482 TIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ LK + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 542 AGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 601 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 656 KALEDIMVHYDNTTRNSLGN-VIQFIYG 682
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 181/703 (25%), Positives = 304/703 (43%), Gaps = 89/703 (12%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVS 165
A R+LS +LKRI + + L F + D ILE LP+PP + + D S
Sbjct: 216 ADRVLS-------VLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATS 268
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R ++G P E + LQ + Y + R T
Sbjct: 269 RSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEF-TQLLQFHIATYFDNELPGQPRAT 327
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 328 QKSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 380
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELVD + Y +R+ +
Sbjct: 381 SIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQH 440
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 441 LELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 500
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + D LL + + K+ F++K
Sbjct: 501 EMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV 560
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFD 489
M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 561 FMNTLMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHADTETGFI 618
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + +V I+ E GP+ +F Q L+ L
Sbjct: 619 TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLL 678
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-QNELVDLQ--------IENHI 599
+GF++ + D + + I + I + + + Q + +D + EN +
Sbjct: 679 QNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRV 738
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
V K + +++ L ++ + S + + Q +G Q + GK
Sbjct: 739 NQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPF 797
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + +Y G ++ + GL P E H++ RE ++ +
Sbjct: 798 GFDGRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 847
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 848 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 889
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P +G G KCE+C + +C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETC-MANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFGY+EL P+YH
Sbjct: 77 PGHFGYLELAKPMYH 91
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 181/703 (25%), Positives = 304/703 (43%), Gaps = 89/703 (12%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVS 165
A R+LS +LKRI + + L F + D ILE LP+PP + + D S
Sbjct: 215 ADRVLS-------VLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATS 267
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R ++G P E + LQ + Y + R T
Sbjct: 268 RSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEF-TQLLQFHIATYFDNELPGQPRAT 326
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 327 QKSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 379
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELVD + Y +R+ +
Sbjct: 380 SIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQH 439
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 440 LELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 499
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + D LL + + K+ F++K
Sbjct: 500 EMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV 559
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFD 489
M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 560 FMNTLMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHADTETGFI 617
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I++ E+L G + T+ + +V I+ E GP+ +F Q L+ L
Sbjct: 618 TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLL 677
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-QNELVDLQ--------IENHI 599
+GF++ + D + + I + I + + + Q + +D + EN +
Sbjct: 678 QNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRV 737
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
V K + +++ L ++ + S + + Q +G Q + GK
Sbjct: 738 NQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPF 796
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + +Y G ++ + GL P E H++ RE ++ +
Sbjct: 797 GFDGRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 846
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 847 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 888
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P +G G KCE+C + +C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETC-MANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFGY+EL P+YH
Sbjct: 77 PGHFGYLELAKPMYH 91
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 179/691 (25%), Positives = 306/691 (44%), Gaps = 68/691 (9%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
+R + S EV + K I E +L F + +++ + P P IS +
Sbjct: 11 ERRVISADEVLNVFKHISPEDSVRLGFNEDFARPEWMILTVLPVPPPPVRPSISFNETQR 70
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
D L +LK + + R +G+P QE E+ LQ V Y++ + G ++ +
Sbjct: 71 GEDDLTYKLGDILKANINVQRLEINGSPQHVIQESEAL-LQFHVATYMDNDIAGQPQALQ 129
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 130 K-------SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L +LV N D LR + G L+ G
Sbjct: 183 IARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ +L +V +Q++S+ + + + D L ++ M + F++ Q L
Sbjct: 303 HVPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE--LDQVL 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P P + K + W+ QIL +P G FD +
Sbjct: 361 NMLYWIPDWDGVIPTPIILKPK--PLWSGKQILSIAIPSGIHLQRFDEGTTLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G D+ T+ S ++ + EKGP+ F +LQ ++ L +GFS+
Sbjct: 419 LIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVNFWLLHNGFSIG 478
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--NHI 599
+ D ++K + + KE QA H M+ + D + N
Sbjct: 479 IGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMTLRESFEDSVVRYLNEA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ + S + + Q + +G Q S GK + +
Sbjct: 539 RDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 598 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN N +IQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGN-VIQFIYG 682
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 179/714 (25%), Positives = 305/714 (42%), Gaps = 99/714 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGV 164
R + + E +L+RI E+ K + G+ P+ +IL LP+PP + P + G
Sbjct: 208 RRIFAAEEAYTVLRRISEDDLKMM---GFDPERAHPASFILSTLPIPPLAVR-PSVQYGS 263
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSR 224
+ DL++ ++ V + + R S V S LQ V L+ T
Sbjct: 264 ARSEDDLTLKLVDIVKTNLSLKRQGDS---------VPSAVLQEMV-MLLQYHVTTLFDN 313
Query: 225 DVDARFGVS---QDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
D+ + + P + +A L+ ++R + K FS+R+VITGD ++ +GV
Sbjct: 314 DIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGV 373
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKG-HTFL 330
P IA +T+ E V NI L++LV D S + LR KG L
Sbjct: 374 PKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVL 433
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
G V R + DGD V NR P+ HK S+ V + T ++N + P +ADFDGD
Sbjct: 434 EVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDE 493
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFT 449
++L QS +AE+ L V KQ++S + + D+LL++ K + FL K
Sbjct: 494 MNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMV 553
Query: 450 QQLAM---FALSPLPRPALSKARCSARWTALQILQSVLPPGFDSC--------------- 491
+ + + +P PA+ R WT Q+ +L FDS
Sbjct: 554 YNILLQIPYWSGVVPPPAI--VRPVPLWTGKQLFSLLL--FFDSSVSGGNTKTRINMQRD 609
Query: 492 ------------------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
+R +I++ E+L G + + S ++ ++ E GPE
Sbjct: 610 VGAGLVDRKKENLFISERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTK 669
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAA-------LWNIQKEIQALYSLLYH-RMS 585
+F +LQ L L GF+V +D ++ L +KE+ L L + R+
Sbjct: 670 DFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLE 729
Query: 586 TQ-----NELVDLQIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+Q E + ++ + + + A+ + +S+ + ++ + S + + Q
Sbjct: 730 SQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMA 789
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
+G Q + GK E HF + +Y G ++ + GL+P+E H+
Sbjct: 790 CVG-QQNVEGKRIPFGFNERSLPHFHK-----FDYSPQSRGFVENSYLSGLEPHELFFHA 843
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN-VCSNSIIQFDYA 749
+ RE I+ ++ SE G + + LM + DV++ YD TVRN +C ++QF Y
Sbjct: 844 MGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSIC--EVLQFLYG 895
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 175/685 (25%), Positives = 297/685 (43%), Gaps = 72/685 (10%)
Query: 120 MLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI +E + L F + D IL+ LP+PP + + D + DL+ +
Sbjct: 231 ILKRISDEECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMI 290
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGV 232
+ + R ++G P E + LQ + Y + R T +S R + + +
Sbjct: 291 IRHNNNLKRQEQNGAPTHIINEF-TQLLQFHIATYFDNDLPGQPRATQRSGRPIKS---I 346
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V
Sbjct: 347 CQ----RLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVT 402
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMD 342
+N+ L+ELV+ + Y +RE + L G V R + D
Sbjct: 403 PYNLERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCD 462
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +
Sbjct: 463 GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 522
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---S 458
AEV EL V K ++S + + + D LL KV + F++K + M+
Sbjct: 523 AEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDG 582
Query: 459 PLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSE 501
+P PA+ K R WT QI ++P G +S GD + I+K E
Sbjct: 583 KVPTPAIVKPR--PIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGE 640
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+L G + T+ + ++ I+ E GP+ +F Q L+ L GFS+ + D
Sbjct: 641 LLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTIA 700
Query: 562 SKAALWNI-------QKEIQALYSLLYHRM--STQNELVDLQIENHIRHV--------KM 604
A + I + E++ L + + S + EN + V
Sbjct: 701 DSATMEKINDTIFKAKNEVKDLIKIAQEKQLESQPGRTMMESFENRVNQVLNRARDEAGS 760
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
K + +S+ + ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 761 SAQKSLSESNNVKAMVTAGSKGSFINISQMIACVG-QQNVEGKRIPFGFIDRTLPHFTKD 819
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 820 -----DYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 874
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV++ YDGTVRN + +IQF Y
Sbjct: 875 EDVMVKYDGTVRNSLGD-VIQFLYG 898
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + EI S+ C I + L++P LG KCE+CG S
Sbjct: 18 VQFGLMSPDEIRQMSV--CKIESSETYDRGKPKSGGLSDPRLGTIDRQTKCETCGGSM-A 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG++EL P++H
Sbjct: 75 ECPGHFGHLELAKPMFH 91
>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
Length = 993
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/559 (27%), Positives = 250/559 (44%), Gaps = 69/559 (12%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 310
Query: 306 ------KLCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPT----- 353
D LR + G L+ G V R I+DGD + NR P+
Sbjct: 311 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 370
Query: 354 ------THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
HK S+ V V T ++N + P +ADFDGD ++L PQS +AE+ +
Sbjct: 371 MMGHKGXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQ 430
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRP 463
L V ++S + + D L + M ++ FL K + ++ +P+P
Sbjct: 431 LCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQP 490
Query: 464 ALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSEVLKGDFDRDTI 512
A+ K A WT QIL V+P G + D LI E++ G ++ T+
Sbjct: 491 AIVKP--LAMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTV 548
Query: 513 PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKE 572
+ ++ +F EKGPE + FF+ Q ++ L +GFS+ + D + + I+K
Sbjct: 549 GASGGGVIHIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIEKA 608
Query: 573 I--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLID--- 621
+ Q + +T+NEL L N + V+K + K ++T L D
Sbjct: 609 VNLQKDEVAKITKSATENELESLPGMNVRETFESKVSKALNKARDDAGTATEKSLKDLNN 668
Query: 622 ------SKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLN 670
S S + + Q +G Q S GK F +TL HF + +
Sbjct: 669 ATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTL-----PHFTKD-----D 717
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 718 YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 777
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN + I+QF Y
Sbjct: 778 YDGTVRNSLGD-IVQFVYG 795
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 172/636 (27%), Positives = 272/636 (42%), Gaps = 78/636 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V + R + G P +E ES LQ V Y+ + + KS+
Sbjct: 275 DLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESL-LQYHVATYMDNDIAGQPKAMQKSN 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A S K ++R + K FS+R+VITGD + E+GVP IA+
Sbjct: 334 RPVKAI-------RSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI LQ LV N D LR + G L G V
Sbjct: 387 TLTYPEVVTPYNIEKLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ +L V ++S + + D L + K+ + FL K + M+
Sbjct: 507 QSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMW 566
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------FDSCGD-RY 495
+P PA+ K R RWT Q++ LP G F D
Sbjct: 567 VPDWDGVIPPPAILKPR--PRWTGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGL 624
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G F + T+ + ++ +IF E G + FF+ Q ++ L +GFS+
Sbjct: 625 LIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIG 684
Query: 556 LEDFSLSKAALWNIQ-------KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+ D + + I+ KE++++ + +T N L L N + V++
Sbjct: 685 IGDTIPDELTIQRIENCVRNRKKEVESITA-----SATDNTLEPLPGMNVRETFESKVSR 739
Query: 609 FI------LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+ S T L D S S + + Q +G Q S GK
Sbjct: 740 ALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGF 798
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 799 KYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 853
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 854 GYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYG 888
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S+ L +P LG CE+C +
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQ-K 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YH ++++K
Sbjct: 78 ECPGHFGHIELATPVYHIGFLTKIK 102
>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
Length = 1364
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 195/709 (27%), Positives = 302/709 (42%), Gaps = 103/709 (14%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
+V +L+RIPE+ L P+D +L LPVPP C+ IS+ S + D
Sbjct: 223 DVLNLLERIPEDDVCLLCMNPAMVHPRD-LMLTRLPVPPLCVRPSVISELKSGTNEDDLT 281
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
L +++ ++I+ R + + LQL Y+ T +S
Sbjct: 282 MKLSEIIFINDVIQKHRQSGAKVHMINEDWDFLQLHCALYINSETTG---------IPLS 332
Query: 234 QDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
P T+ +++++ R K FSSR+VI+ D +++++GVP +A+ +T
Sbjct: 333 MQPKKATRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIDQVGVPEHVAKILT 392
Query: 287 FEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREG--SKGHTFLRPGQVVH 337
F E+VN NI L+ELV N + +G+S LR G SK + L+ G VV
Sbjct: 393 FPEKVNRANIFLLRELVRNGPDTHPGANFVEDRNGNSKRYLRYGNRSKISSELKFGDVVE 452
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R ++D D V NR P+ HK S+ A V T + N +C P +ADFDGD ++L PQ
Sbjct: 453 RHLIDDDIVLFNRQPSLHKLSIMAHRAKVLKHRTFRFNECVCTPYNADFDGDEMNLHLPQ 512
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL 457
+L AKAE L L S + L + NG L + D + ++ +K + FTQ A + L
Sbjct: 513 TLEAKAEALVLMSNKANLATPRNGELLIAATQDFITGAYLLTQK---NTFFTQAKANWLL 569
Query: 458 S------------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY-- 495
+ LP PA+ K WTA QI +L P + G Y
Sbjct: 570 ACILAGKDANLHIDLPPPAIIKP--MRLWTAKQIFSVILKPNKKCKIVCNLRTKGKAYTS 627
Query: 496 -----------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLL 543
LI+ S +L G D+ T+ S + + I G + L +
Sbjct: 628 REEMCVNDSFVLIRNSVLLAGTMDKGTLGSGSKDNILYILLRDWGEDAAATVMWRLARIA 687
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNEL 590
L GFS+ L D + L +K + A YS + T +E
Sbjct: 688 SWFLMNRGFSIGLGDVTPGVGLLRAKEKLLNAGYSKCVEYIKAMEAGKLPCQPGCTIDET 747
Query: 591 VDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSD----SAVSKVVQQAGFLGL 640
++ I + ++ K L+ S + L SK S + V Q G
Sbjct: 748 LEAVILKELSVIRDHAGKACLQELHSSNSPLIMALCGSKGSFINISQMIACVGQQAISGK 807
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
++ D KF ++ L FER + P AK G ++ F+ L P E H++ R
Sbjct: 808 RVPD--KFENRAL-----PQFERYTKI----PAAK-GFVENSFYSSLTPTEFFFHTMGGR 855
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E +V ++ +E G + + L+ L D+ + YD TVRN IIQF+Y
Sbjct: 856 EGLVDTAVKTAETGYMQRRLVKALEDLCVQYDMTVRN-SMGEIIQFNYG 903
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 177/703 (25%), Positives = 302/703 (42%), Gaps = 79/703 (11%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDI 160
K A+R+LS +LKRI +E L Y D IL+ LP+PP + +
Sbjct: 128 KQQLTAERVLS-------VLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVM 180
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------ 214
D + DL+ + + + + R+G P E + LQ + Y
Sbjct: 181 MDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIILEF-AQLLQFHIATYFDNELPG 239
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
+ R T +S R + + S KA ++R + K FS+R+VIT D ++E
Sbjct: 240 QPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 292
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK--------- 325
+GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 293 LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIREDGQRLDLRYLKK 352
Query: 326 -GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
L G V R + DGD V NR P+ HK S+ + + T ++N + P +A
Sbjct: 353 SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 412
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YF 443
DFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K+ F
Sbjct: 413 DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 472
Query: 444 LDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP-------------- 486
++K + M+ +P P + K R WT Q+ ++P
Sbjct: 473 IEKDVFMNILMWWEDFDGKVPAPTILKPR--PLWTGKQVFNLIIPKQINLLRTSAWHSEN 530
Query: 487 --GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
GF + GD + I++ E+L G + + + ++ I+ E GP+ +F Q L+
Sbjct: 531 ETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 590
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNEL-------VDLQ 594
L +GFS+ + D + + I I + + RM+ + L +
Sbjct: 591 NYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMES 650
Query: 595 IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
EN + V K + +S+ L ++ + S + + Q +G Q + G
Sbjct: 651 FENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEG 709
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K ++ HF + +Y G ++ + GL P E H++ RE ++ +
Sbjct: 710 KRIPYGFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 764
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 765 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 178/716 (24%), Positives = 302/716 (42%), Gaps = 90/716 (12%)
Query: 96 AFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVP 151
AF + K + A+R V+++ + I +E + L G+ P+ + +L LPVP
Sbjct: 202 AFAAERKQELAAER-------VQQIFRHIRDEDLELL---GFHPRFSRPEWMVLSVLPVP 251
Query: 152 PNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVG 211
P + D VS DL+ + + + R G P +E + LQ V
Sbjct: 252 PPHVRPSIQMDAVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVIRE-QYVLLQFHVA 310
Query: 212 QYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVIT 265
++ R T +S R + + ++Q K ++R + K FS+R+VIT
Sbjct: 311 TFMNNDLPGMPRATLRSGRPLKS---IAQ----RLKGKEGRVRNNLMGKRVNFSARTVIT 363
Query: 266 GDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSY 318
D ++E+GVP +A +T+ E V +NI+ L E V N L + +DG
Sbjct: 364 ADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPGALFVIRNDGKRIA 423
Query: 319 SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 378
L PG VV R +++GD V NR P+ H+ S+ V + T ++N
Sbjct: 424 LQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHRMSIMGHRVRILPYSTFRMNLSA 483
Query: 379 CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM 438
P +ADFDGD ++L PQS +AE+ EL +V K ++S + + D+LL +
Sbjct: 484 TSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIVSPQANRPVMGIVQDSLLGCML- 542
Query: 439 FKKYFLDKAFTQQLAMFAL--------SPLPRPALSKARCSARWTALQILQSVLPPGFD- 489
+ L F ++ +F L +P PA+ K R WT QI +LP G +
Sbjct: 543 ---FTLRDTFLEEDTVFNLLLHLPHFDGRIPAPAILKPR--PLWTGKQIFSLLLPDGVNL 597
Query: 490 ----------------SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
R LI+ E++ G D+ T+ S ++ + E GPE
Sbjct: 598 ERLSNGHPDHERTIMTPSDTRVLIQNGELITGIVDKRTVGSSAGSLIHVTWKESGPERTS 657
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELV 591
+ +Q L+ L +G S+ + D + I + IQ + R++ + L
Sbjct: 658 QLISDIQLLINYWLMQNGMSIGIGDCIADAHTMAAINRTIQEAKDEVRQLIRLAQEGRLE 717
Query: 592 DLQIENHIRHVKMLVAKFI---------------LKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ + + V + + L S+ + ++ + S + V Q
Sbjct: 718 RQPGKTMLESFEACVNRVLNSARDKAGGFAQESLLPSNNIKRMVSAGSKGSFINVSQIVA 777
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
+G Q + GK HF +D P A+ G ++ + GL P E H+
Sbjct: 778 CVGQQ-NVEGKRIPYGFRRRTLPHFV----VDDLSPEAR-GFVENSYLRGLTPEEVFFHA 831
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+ RE ++ ++ +E G + + LM + D+ I YDGTVRN + ++QF Y +A
Sbjct: 832 MGGREGLIDTAVKTAETGYIQRRLMKAMEDIRIEYDGTVRNSLGD-VMQFLYGDDA 886
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 188/787 (23%), Positives = 328/787 (41%), Gaps = 99/787 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P ++ + L + A I D +++ + V E+LK I +E L F +
Sbjct: 161 YQP-NLRRVGLDVSAEWKHINEDSQEKKIALTAERVWEILKHITDEECFILGMDPKFARP 219
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN----- 195
D I+ LPVPP C+ + G + DL+ + + E++R+ ++G
Sbjct: 220 DWMIVTCLPVPPLCVRPAVVMYGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAE 279
Query: 196 ------FESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 280 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 326
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 327 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 386
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 387 YPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 446
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 447 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQ 506
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+P + K + WT Q
Sbjct: 507 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPK--PLWTGKQ 564
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ E++KG + T+ +
Sbjct: 565 LFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVKGILCKKTLGTSPG 624
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ IF E G E +F+ ++Q ++ L +G S+ + D + IQ I+
Sbjct: 625 SLLHVIFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADRQTYSEIQNAIKKAK 684
Query: 578 SLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ + H M T + EN + + K + + + L ++
Sbjct: 685 ADVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 744
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 745 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 798
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 799 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG 858
Query: 741 NSIIQFDYAVNARKSHSLFPAGEPV--GVLAATAMSNPAYKAVLDSSPSSNNSW------ 792
+IQ Y + GE V L+ ++N A++ P++ +
Sbjct: 859 -QLIQLRYGEDGL-------CGETVEFQFLSTIKLANKAFERKFKFDPTNERTLRRIFNE 910
Query: 793 ELMKEIL 799
++MKE++
Sbjct: 911 DVMKELM 917
>gi|395646424|ref|ZP_10434284.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
gi|395443164|gb|EJG07921.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
Length = 880
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 169/701 (24%), Positives = 309/701 (44%), Gaps = 90/701 (12%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSD 170
+++ L+RIP++ + L G P + IL LPVPP + I + D
Sbjct: 175 ADIRARLERIPDDDLRLL---GINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L+ ++ + + +G P +++ LQ V Y+ EV G +
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYMDNEVAGCPPARHR--- 287
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P T L+ + R K FS+R+VI+ D + VNE+GVP IA
Sbjct: 288 ----SGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPFLDVNEVGVPLAIANE 343
Query: 285 ITFEERVNVHNIN----YLQELVDNKLCLTYSDGSSSYSLREGSKGHTF----------- 329
++ RV +N+ Y++ VD K + ++Y +R +
Sbjct: 344 MSVPVRVTNYNLEAARFYVRNGVDRKNLIDPP--GANYVIRPDQRRIRLSDENKSDVADQ 401
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
+ PG V R++ DGD V NR P+ H+ S+ A + + T ++NP +C P +ADFDGD
Sbjct: 402 IEPGWTVERQLRDGDIVLFNRQPSLHRMSIMAHHIKIMGGKTFRLNPAVCPPYNADFDGD 461
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFT 449
++L PQ+ A AE L +VE+ + S G + D + + ++ + + FT
Sbjct: 462 EMNLHVPQTEEAMAEAEILVNVEENIRSPRFGGPIIGGIHDHISGIFLLTHEV---RWFT 518
Query: 450 QQLAMFAL-----SPLPRPALSKARCSARWTALQILQSVLPPGF------------DSCG 492
++ A++ L LP P + A W+ Q+ ++LPPG D+C
Sbjct: 519 KEEALYLLRHAEVEHLPEPGKVE-NGVAYWSNKQVFSAILPPGINMIFKASSCKHCDTCK 577
Query: 493 ------DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
D Y+ ++ E++ G D+ I + EIV I + + +F + + L +
Sbjct: 578 KELCDQDTYVKMRDGELITGTIDKKAIGAFDGEIVNRIIRQYSQKRAAQFINDVTRLSIR 637
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVD 592
+ DGFS ++D L+K I++ + + R++ T+ E ++
Sbjct: 638 AIMFDGFSFGIDDEDLTKTEYGQIKEVLDNAEKDVRRRIAIYEDGQLEPMPGRTEEETLE 697
Query: 593 LQIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
+QI + + + ++ + S++ + S + ++ + Q AG +G Q S RG+
Sbjct: 698 MQIMQVLGKARDRTGEIASRHLGLSNSAVVMAVSGARGSILNLTQMAGCVG-QQSVRGER 756
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ + HF+R + +A +G ++ + GL+P E H+I RE +V ++
Sbjct: 757 IVRGYDQRTLPHFKR-----GDRGSAAHGFVRSSYKSGLNPTEFFFHAIGGREGLVDTAV 811
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G L + ++ L+D+ + YD +VR ++QF Y
Sbjct: 812 RTSQSGYLQRRMINALQDLKVEYDRSVR-TTGGRMLQFKYG 851
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 179/705 (25%), Positives = 307/705 (43%), Gaps = 72/705 (10%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVP 158
Q+ + V ++ S V +LKRI +E + L Y D IL+ LPVPP +
Sbjct: 122 QLMPEPVERKQQLSAERVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPVPPPPVRPS 181
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
+ D S DL+ + + + + ++G P E + LQ + Y
Sbjct: 182 VMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKTGAPAHIISEF-AQLLQFHIATYFDNEL 240
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R T +S R + + S KA ++R + K FS+R+VIT D +
Sbjct: 241 PGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINI 293
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK------- 325
+E+GVP+ IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 294 DELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYL 353
Query: 326 ---GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
L G V R + DGD V NR P+ HK S+ + + T ++N + P
Sbjct: 354 KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPY 413
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK- 441
+ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K+
Sbjct: 414 NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 473
Query: 442 YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP------------ 486
F++K + M+ +P P + K R WT Q+ ++P
Sbjct: 474 TFIEKDVFMNILMWWEDFDGKIPAPTILKPR--PLWTGKQVFNLIIPKQINLIRYSAWHA 531
Query: 487 ----GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
GF + GD + I+K EV+ G + T+ + ++ I+ E GP+ +F Q
Sbjct: 532 ESETGFITPGDTCVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQW 591
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ------ 594
L+ L GFS+ + D A + I + I + + + + Q++ ++ +
Sbjct: 592 LVNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQDKQLEAEPGRTMM 651
Query: 595 --IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
EN + V K + +S+ L ++ + S + + Q +G Q +
Sbjct: 652 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNV 710
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
GK HF + D P ++ G ++ + GL P E H++ RE ++
Sbjct: 711 EGKRIPYGFDGRTLPHFTK----DDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLI 765
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 766 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
Length = 1028
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 170/687 (24%), Positives = 308/687 (44%), Gaps = 74/687 (10%)
Query: 121 LKRIPEETRKKLAGKGYFPQD----GYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
L+RI +E + L G+ P+ IL LPV P C+ P I G + D L
Sbjct: 130 LERISDEHARDL---GFEPEHIRPHWMILSKLPVVPPCVR-PSIEHGTAGAGQDDLTYKL 185
Query: 177 KKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD 235
++K +R ++G +F E + L L V Q ++ K ++ + V +
Sbjct: 186 SDIVKTNNRLREKEKNGETDFNISETR-DLLMLYVAQMMD-NTNPKLTQAIQKSGRVLKC 243
Query: 236 PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
+S K ++R + K FS+R+VIT D ++++GVP IA +TF ERV ++N
Sbjct: 244 ISSRLKGKEGRLRNNLMGKRVDFSARTVITPDPNLEIDQVGVPISIASNMTFPERVTLYN 303
Query: 296 INYLQELVDN------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFIN 349
+ L+E V+N + + DG+S + S + L+PG +V R + D D + N
Sbjct: 304 MERLKEKVENGSEYPGAKFIIHKDGTS-VDVELASDEYKQLQPGYIVERHVEDDDLILFN 362
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N + P +ADFDGD ++L PQSL AKAE+ E+
Sbjct: 363 RQPTLHKMSMMGHRVKVLPYSTFRLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMM 422
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL----SPLPRPA 464
V K ++S+ + + DALL +M K+ FL+K M LP+P
Sbjct: 423 MVSKNIVSTQGNAPVIAIVQDALLGSVLMTKRDVFLEKDIMMNCCMRLKENFNGELPQPC 482
Query: 465 LSKARCSARWTALQI---------------------LQSVLPPGFDS----CGDRYLIKK 499
+ K + W+ Q+ ++ ++ FD + +I +
Sbjct: 483 ILKPK--QLWSGKQLFSLVLKGCEVNLFREANQYDDVKKIMGKEFDEDICPMDTKVVISR 540
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E++ G D+ T+ ++ +IF E E F ++LQ ++ + G+S+ +ED
Sbjct: 541 GELISGVADKRTLGKGGGSLIHTIFNEYSFIEASNFLNTLQWVVNYWMLQHGYSIGVEDT 600
Query: 560 SLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIENHIRHV 602
+ +Q+ + + + Y + + + +L V+ + + +
Sbjct: 601 IADENTADQVQQTLSKAHEEVSKYIKEAQEGKLKSKPGMSLQESFEAAVNKTLNDSMSSA 660
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
A + K + + ++ S + + + Q +G Q + GK + + HFE
Sbjct: 661 GKNSASSLSKRNRIKTMVVGGSKGSNTNISQIIACVGQQ-NIEGKRITFGFRKRTLPHFE 719
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ + + P ++ G ++ + GL P E H++ RE ++ ++ ++ G + + L+
Sbjct: 720 Q----NDHRPISR-GFVQNSYLRGLLPQEFFFHTMGGREGLIDTAVKTAKTGYIQRRLIK 774
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D + YDGTVR+ N I+QF Y
Sbjct: 775 SMEDFQVKYDGTVRDSAGN-ILQFLYG 800
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
P131]
Length = 1745
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 186/732 (25%), Positives = 315/732 (43%), Gaps = 98/732 (13%)
Query: 83 HPSHISELKLTMYAFQLQIKNDGVAQRL---LSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
HP I + L +YA + + +G+ + + L + + +LK IPE+ K+ +
Sbjct: 170 HPD-IRKKALQLYAKVEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYA 228
Query: 140 QDGYILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTPN 195
+ +++ + P P IS DG S M S DL+ + + + ++ G PN
Sbjct: 229 RPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPN 288
Query: 196 FESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLE---- 245
E E LQ V Y++ R KS R P + +A L+
Sbjct: 289 HICTEFEEL-LQYHVATYMDNDIASIPRSLQKSGR-----------PIKSIRARLKGKEG 336
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V HNI+ L + V N
Sbjct: 337 RLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVN 396
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ +DG+ ++G T L GQ V R ++ GD + NR P+ HK S
Sbjct: 397 GPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKES 456
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 457 MMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 516
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D L + K+ + FL K + ++ +P+PA+ + R RW
Sbjct: 517 QRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPR--PRW 574
Query: 475 TALQILQSVLP------PGFD---SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
T QI+ V+P G D D LI+ E++ G + + + I+ +
Sbjct: 575 TGKQIISMVIPDFVTTHQGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYN 634
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS 585
E+GP + F + Q ++ L +G S+ + D + IQ I + +
Sbjct: 635 EQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHIN-------EQKA 687
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS---------------- 629
EL DL N + + + + +S L ++ + +
Sbjct: 688 EVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSR 747
Query: 630 --------KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYG 677
+ Q +G Q+ + + F +TL HF + D P A+ G
Sbjct: 748 SGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHFTK----DDFSPEAR-G 797
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV YDGTVRN
Sbjct: 798 FVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRN 857
Query: 738 VCSNSIIQFDYA 749
+ IIQF Y
Sbjct: 858 SLGD-IIQFIYG 868
Score = 47.4 bits (111), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FG+ +EI S+ + L +P LG KC++C ++
Sbjct: 19 IQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDRQYKCKTC-NNDMN 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P+YHP I++ K
Sbjct: 78 NCPGHFGHIELAKPVYHPGFINKTK 102
>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
bisporus H97]
Length = 1402
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 186/691 (26%), Positives = 297/691 (42%), Gaps = 86/691 (12%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
++ +YL VPP C+ DG S DL++ + + V I + G+P + E +
Sbjct: 246 FVWQYLSVPPVCIRPSVAQDGASN-EDDLTVKLTEIVFTNALIKKGLLRGSPTPQFME-Q 303
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
+ LQL+V Y+ E+ G R V + K + R K FS
Sbjct: 304 WDFLQLSVAMYVNSELPGVPSQPGQKPIRGFVQR-----LKGKQGRFRGNLSGKRVDFSG 358
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSL 320
R+VI+ D R++E+ VP +A+ +T+ ERV HNI L++ V N G++ S
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGP--DVHPGANYVSR 416
Query: 321 REGSKGHTF---------LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHT 371
E K F L G VV R+I+DGD V NR P+ HK S+ V T
Sbjct: 417 AETKKILRFPNRNSIADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKVRPWRT 476
Query: 372 VKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDA 431
++N +CGP +ADFDGD ++L PQ+ A+AE LEL SV+ L++ NG+ + D
Sbjct: 477 FRLNECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDF 536
Query: 432 LLSLKVMFKK--YFLDKAFTQQLAMFALS----PLPRPALSKARCSARWTALQILQSVLP 485
+ + ++ +K +F + FTQ F + +P P + K + WT Q+ ++
Sbjct: 537 ITASYLLSRKDTFFDRRQFTQICCYFGDANMQIDIPPPTIWKP--ARLWTGKQVFNVLMR 594
Query: 486 PGFDS-------C-------------------------GDRYL-IKKSEVLKGDFDRDTI 512
P +S C D +L + SE++ G D+ T+
Sbjct: 595 PNKNSEVLVNVECKCNKWEEAKPENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATV 654
Query: 513 PSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-----------S 560
S + I I + GP E + L L L GFS+ + D S
Sbjct: 655 GSGKKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDVIPGPQLKARKES 714
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMS-TQNELVDLQIENHIRHVKMLVAKFILK--SSTL 616
L + A + Q I A L ++ Q + ++ I + + V+ V + +K S
Sbjct: 715 LVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQICMKELSRHN 774
Query: 617 GYLIDSK--SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
LI + S +V V Q +G Q+ G + HF P P +
Sbjct: 775 APLIMATCGSKGSVINVSQMVACVGQQII-AGHRVPNGFQDRSLPHF----PKKSKEPPS 829
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
K G ++ F+ GL E + H+IS RE +V ++ +E G + + LM L D+ YD +
Sbjct: 830 K-GFVRNSFYSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLS 888
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
VRN + ++QF Y + L +P+
Sbjct: 889 VRN-STGGVVQFRYGDDGLDPACLEGDAQPI 918
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 280/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ + Y++ + G ++ +
Sbjct: 261 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHIATYMDNDIAGQPQALQK-- 317
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 318 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 372
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 373 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 432
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 433 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 492
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L SV Q++S + + + D L + K+ + F++ Q L M
Sbjct: 493 QSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE--LDQLLNML 550
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K W+ QIL +P G FD + LI
Sbjct: 551 YWVPDWDGIIPTPAIIKP--VPLWSGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLII 608
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ + F ++Q ++ +GFS + D
Sbjct: 609 DGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMFGNIQKVVNFWFLHNGFSTGIGD 668
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + + KE QA H M+ + D ++ N R
Sbjct: 669 TIADGGTMKEITETIADAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 728
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 729 AGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 788 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 843 KALEDIMVHYDSTTRNSLGN-VIQFVYG 869
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSI----------SHASQLANPFLGLPLEFGKCESC--GTSE 64
++FGL + +E+ + S++ + L +P LG KC++C G +E
Sbjct: 17 VQFGLFSPEEVRSISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNE 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+I+L P++H IS++K
Sbjct: 77 ---CPGHFGHIDLAKPVFHIGFISKIK 100
>gi|397135824|gb|AFO11407.1| RNA polymerase I, partial [Cyniclomyces guttulatus]
Length = 871
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 178/691 (25%), Positives = 305/691 (44%), Gaps = 69/691 (9%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
QR+LS E+ + K I E +L F + +++ + P P IS S
Sbjct: 12 QRVLS-VEEILNIFKHISPEDSTRLGFDEEFARPEWMILTVLPVPPPPVRPSISFNESQR 70
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
D L +LK + + +G P+ +E ES LQ V Y++ + G ++ +
Sbjct: 71 GEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDNDIAGQPQALQ 129
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP
Sbjct: 130 K-------SGRPVXSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L +LV N D LR + G L+ G
Sbjct: 183 IARTLTYPEVVTPYNIDRLTKLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ +L +V Q++S + + + D L ++++ K F++ + L
Sbjct: 303 HVPQSEETRAELSQLCAVPLQIVSPQSNXPCMGIVQDTLCGIRILTLKDTFIE--YDHAL 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG------------FDSCGDRY 495
M P +P P++ K + WT Q+L + +P G +
Sbjct: 361 NMLYQIPDWDGIVPPPSILKPK--PLWTGKQLLSAAIPKGIHLQRFXEGTTLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI +++ G D+ T+ S ++ + EKGP F ++Q ++ L +GFSV
Sbjct: 419 LIIDGQIIXGVVDKKTVGSSNGGLIHVVTREKGPTTCARLFINIQKIVNFWLLHNGFSVG 478
Query: 556 LED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
+ D + +K + + KE QA H M+ + D ++ N
Sbjct: 479 IGDTIANGETIRQITETXAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEA 538
Query: 600 RHVKMLVAKFILKSST-LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ L + + ++ + S + + Q + +G Q S GK + V+
Sbjct: 539 RDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGXVDRTX 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 598 PHFSKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIXTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YD T RN N IIQF Y
Sbjct: 653 RLVKALEDIMVHYDSTTRNSLGN-IIQFLYG 682
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 158/635 (24%), Positives = 273/635 (42%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSPLPRPALSKARCSAR---WTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P + WT Q+L +P G FD D LI
Sbjct: 548 NMCYWIPNWDGVIPPPAVVKPKPLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+ +
Sbjct: 608 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGIG 667
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D + ++ K IQ + Q ++D Q +
Sbjct: 668 DTIADAQTMRDVTKTIQEA------KQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRV 721
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 722 LNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFG 780
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 781 DRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 835
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 836 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
Score = 44.3 bits (103), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ L +P LG +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
Length = 868
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 282/632 (44%), Gaps = 75/632 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R + G P E E+ LQ V Y+ + R KS
Sbjct: 74 DLTYKLADILKANSNVERCEQEGAPAHVINEFEAL-LQYHVATYMDNDIAGQPRALQKSG 132
Query: 224 RDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
R P + +A L+ ++R + K FS+R+VITGD ++++GVP
Sbjct: 133 R-----------PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPK 181
Query: 280 EIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRP 332
IA+ +T+ E V +NI L ELV N D LR + G L+
Sbjct: 182 SIARTLTYPEIVTPYNIQRLTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQY 241
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G V R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++
Sbjct: 242 GWKVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMN 301
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
L PQS +AE+ ++ +V Q++S + + + D L ++ M K+ F+D + Q
Sbjct: 302 LHVPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFID--YEQV 359
Query: 452 LAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DR 494
+ + P +P+PA+ K R WT Q++ +P G FD +
Sbjct: 360 MNILLWIPGWDGVVPQPAILKPR--PMWTGKQMVSMTIPSGIFLQRFDDGNPISSPKDNG 417
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
LI+K E++ G D+ T+ + ++ +I EKGP+ FF ++Q ++ L +GFS+
Sbjct: 418 MLIQKGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVCAGFFGNIQKVVNYWLLHNGFSI 477
Query: 555 SLEDFSLSKAALWNIQKEI----QALYSLLYHRMS---------TQNELVDLQIE---NH 598
+ D A + +I I Q + ++ S T E + + N
Sbjct: 478 GIGDTIADGATMRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTLRESFEHNVSRVLNQ 537
Query: 599 IRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
R A+ LK + + ++ + S + + + +G Q+ + GK +
Sbjct: 538 ARDNAGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVE-GKRIPFGFGDRS 596
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 597 LPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 651
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L D+++ YDGT RN + +IQF Y
Sbjct: 652 RRLVKALEDIMVQYDGTTRNSLGD-VIQFVYG 682
>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
Length = 872
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 279/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADILKANINVQRLEIDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEVVTPYNIQKLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE--YEQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDR-------Y 495
M P +P PA+ K + W+ Q+L +P G FD D
Sbjct: 361 NMLYWIPNWDGVIPPPAVFKPK--PLWSGKQLLSMAIPKGIHLQRFDDGRDMLSPKDLGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
L+ E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 419 LVVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHI 599
+ D K + ++ IQ + + + QN+L +I N
Sbjct: 479 IGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNKLEPEPGMTLRESFEHNVSRILNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFGDRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 165/641 (25%), Positives = 281/641 (43%), Gaps = 69/641 (10%)
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---- 215
+ DG S DL+ + + + R+ G P ++ E + LQ V +++
Sbjct: 181 LVDGTSRGEDDLTYKLCDVIKANACLQRAEAEGAPGHRIKDHE-DFLQFHVATFVDNEIS 239
Query: 216 --VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
R +S R + A S K ++R + K FS+R+VITGD ++
Sbjct: 240 GLPRAMQRSGRPIKA-------IRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSID 292
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGSKG 326
E+GVP IA+ +T E V +NI +LQ L+ N + S+G G+KG
Sbjct: 293 EVGVPRSIARNLTLPEIVTRYNIGHLQALLKNGPSTHPGAKYVIKSNGDRIDLRYTGNKG 352
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R I DGD + NR P+ HK S+ V V T ++N + P +ADF
Sbjct: 353 DLNLQYGWIVERHINDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADF 412
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS+ AKAE+ +L V Q++S + + D L ++ ++ FL
Sbjct: 413 DGDEMNLHVPQSVEAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLT 472
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----GFDSC------- 491
K+ + M+ +P PA+ K + WT QIL ++P F S
Sbjct: 473 KSTVMCILMWVPGWDGNVPIPAILKPK--PLWTGKQILSLIIPKVNCIAFHSTHPDDEKT 530
Query: 492 ----GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
GD + +++ +L G + T+ + +V I+ E G E F + Q ++
Sbjct: 531 DISPGDTKVIVEDGHLLAGIVCKKTVGTSSGGLVHVIWMEYGSEACKHFLNGCQTIVNYW 590
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSL------------------LYHRMSTQN 588
L +GFS+ + D A+ I I A + L R + +
Sbjct: 591 LIHNGFSIGIGDTIADNKAMEMINDIILAAKNQVSKLIGEAQKDHLKPQPGLTIRETFEA 650
Query: 589 ELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
E V+ + + + + + + + ++ + S + + Q + +G Q + GK
Sbjct: 651 E-VNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVG-QQNVEGKR 708
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
HF + D + P ++ G ++ + GL+P E H++ RE ++ ++
Sbjct: 709 IPFGFKYRTLPHFVK----DDHSPESR-GFVENSYLRGLNPQEFFFHAMGGREGLIDTAV 763
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVRN N IIQF Y
Sbjct: 764 KTAETGYIQRRLVKALEDVMVKYDGTVRNAQGN-IIQFVYG 803
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 180/714 (25%), Positives = 304/714 (42%), Gaps = 99/714 (13%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGV 164
R + + E +L+RI EE K + G+ P+ +IL LP+PP + P + G
Sbjct: 208 RRIFAAEEAYAVLRRISEEDLKMM---GFDPERAHPASFILSTLPIPPLAVR-PSVQYGS 263
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSR 224
+ DL++ ++ V + + R S V S LQ V L+ T
Sbjct: 264 ARSEDDLTLKLVDIVKTNLSLKRQGDS---------VPSAVLQEMV-MLLQYHVTTLFDN 313
Query: 225 DVDARFGVS---QDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
D+ + + P + +A L+ ++R + K FS+R+VITGD ++ +GV
Sbjct: 314 DIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGV 373
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKG-HTFL 330
P IA +T+ E V NI L++LV D S + LR KG L
Sbjct: 374 PKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVL 433
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
G V R + DGD V NR P+ HK S+ V + T ++N + P +ADFDGD
Sbjct: 434 EVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDE 493
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFT 449
++L QS +AE+ L V KQ++S + + D+LL++ K + FL K
Sbjct: 494 MNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMV 553
Query: 450 QQLAM---FALSPLPRPALSKARCSARWTALQILQSVLPPGFDSC--------------- 491
L + + +P PA+ WT Q+ +L FDS
Sbjct: 554 YNLLLQIPYWSGVVPPPAI--LHPVPLWTGKQLFSLLL--FFDSSVSGGNTKTRINMQRD 609
Query: 492 ------------------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
+R +I++ E+L G + + S ++ ++ E GPE
Sbjct: 610 VGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTK 669
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAA-------LWNIQKEIQALYSLLYH-RMS 585
+F +LQ L L GF+V +D ++ L +KE+ L L + R+
Sbjct: 670 DFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLE 729
Query: 586 TQ-----NELVDLQIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+Q E + ++ + + + A+ + +S+ + ++ + S + + Q
Sbjct: 730 SQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMA 789
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
+G Q + GK E HF + +Y G ++ + GL+P+E H+
Sbjct: 790 CVG-QQNVEGKRIPFGFNERSLPHFHK-----FDYSPQSRGFVENSYLSGLEPHELFFHA 843
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN-VCSNSIIQFDYA 749
+ RE I+ ++ SE G + + LM + DV++ YD TVRN +C ++QF Y
Sbjct: 844 MGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSIC--EVLQFLYG 895
>gi|397135890|gb|AFO11440.1| RNA polymerase I, partial [Priceomyces castillae]
Length = 872
Score = 176 bits (447), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 159/629 (25%), Positives = 279/629 (44%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANINVQRLEMDGSPQHVINEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 183 IARTLTYPEIVTPYNIHRLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S+ + + + D L ++ M + F+D + Q +
Sbjct: 303 HVPQSPETRAELSEICAVPLQIVSAQSNKPVMGIVQDTLCGVRKMTLRDIFID--YEQVM 360
Query: 453 AMFALSPLPRPALSKARCSAR---WTALQILQSVLPPG-----FD------SCGDR-YLI 497
M P + WT Q+L +P G FD S D LI
Sbjct: 361 NMLYWIPNWDGIVPPPSIIKPKPLWTGKQLLSMAIPKGIHLQRFDDGVNLLSAKDNGMLI 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+++ G D+ T+ + ++ ++ EKGP+ + F+S+Q ++ L +GFS+ +
Sbjct: 421 IDGQIMFGVVDKKTVGATGGGLIHTVMREKGPKACAQLFNSIQKVVNYWLLHNGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-----VDL---------QIENHIRH 601
D + + ++ IQ + + + QN L + L ++ N R
Sbjct: 481 DTIADASTMTDVTTTIQEAKKKVQEIILDAQQNRLDPEPGMTLRESFEHNVSRVLNQARD 540
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ S S + + Q + +G Q+ + GK + H
Sbjct: 541 TAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSLPH 599
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + NY G ++ + GL P E H+++ RE ++ ++ +E G + + +
Sbjct: 600 FTKD-----NYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRI 654
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN + IIQF Y
Sbjct: 655 IKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 178/732 (24%), Positives = 310/732 (42%), Gaps = 85/732 (11%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V + L++I + + L YF + + +L +PVPP + D + DL
Sbjct: 135 SVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVRPSIQMDAMRPSEDDL 194
Query: 172 SIAMLKKVLKQVE-IIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
+ L +LK E + R G P E + LQ ++ E G ++ +
Sbjct: 195 TYK-LSDILKANERLQRCIVEGAPAHVINEFVTL-LQFHTAAFMNNEASGMPQALQK--- 249
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 250 ----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARN 305
Query: 285 ITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQVVH 337
+T+ E V +NI+ LQE V N D +L+ + F L+ G V
Sbjct: 306 LTYPETVTPYNIDRLQEYVRNGRDAYPGAKFVVRDNGEQINLQYNKQRGDFPLQIGYRVE 365
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R ++D D + NR P+ HK S+ V V T ++N + P +ADFDGD ++L PQ
Sbjct: 366 RNLIDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 425
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFA 456
S ++AE+ E+ V KQ +S + + + D L +++ ++ FLD L M+
Sbjct: 426 SEESRAEIKEICMVPKQFISPQSNKPVMGIVQDTLCAIRKFTRRDNFLDTDMIMLLMMWL 485
Query: 457 L---SPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGD-RYL 496
LP P + K + WT QI V+P G + S GD +
Sbjct: 486 PDWDGTLPTPCILKPK--PLWTGKQIYSMVIPKGTNCYRESEGHPDGETTWISPGDTKVY 543
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I+ E++ G + T+ + +V +IF E G E FFD Q ++ +GFSV +
Sbjct: 544 IRDGELVCGMVCKKTVGTSEGGLVHTIFNEFGSESARRFFDGTQRVINNWFIHNGFSVGI 603
Query: 557 EDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVK 603
D A + N+ Y+ + + T E ++++ + + +
Sbjct: 604 GDAVTDNATMENVGTITNECYARVDRYIEEAQNDALECMPGMTIKESFEVRVNTALNNAR 663
Query: 604 MLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
K +L ++ + + + S + + Q + +G Q + GK
Sbjct: 664 DDAGKQVLDRLKDTNNIAQMSLAGSKGSKINISQISACVG-QQNVEGKRIPFGFKYRTLP 722
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 723 HFGKD-----DYSPESRGFVRNSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRR 777
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA--------------VNARKSHSLFPAGEPV 765
L+ L D++ YDG++RN I+QF Y ++ R SH +F V
Sbjct: 778 LIKALEDIMCQYDGSIRN-SQGHIVQFVYGEDGMDGCFIEKQKILSLRPSHKVFDRTYKV 836
Query: 766 GVLAATAMSNPA 777
V+ ++ P
Sbjct: 837 NVMDHGSIFRPG 848
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 182/712 (25%), Positives = 306/712 (42%), Gaps = 82/712 (11%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + V ++ S V +LKRI +E + L Y D IL+ LP+PP +
Sbjct: 120 QEQLMPEPVERKQQLSAERVLNILKRISDEECQMLGFNPKYARPDWMILQVLPIPPPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ + + DL+ + + + + ++G P E + LQ V Y
Sbjct: 180 PSVMMNSTTRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIVTEF-AQLLQFHVATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + S KA ++R + K FS+R+VIT D
Sbjct: 239 ELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++E+GVP+ IA +T+ E V +NI L+ELV+ + Y +R+ +
Sbjct: 292 NIDELGVPWSIALNLTYPEIVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
L G V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 352 YLKRSSDHHLELGYKVERHLNDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMF 439
P +ADFDGD +++ PQS +AEV+EL V K ++S + + + D LL KV
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTK 471
Query: 440 KKYFLDKAFTQQLAMF---ALSPLPRPALSKARCSARWTALQILQSVLPP---------- 486
F +K + M+ +P PA+ K R WT Q+ ++P
Sbjct: 472 GDTFTEKDVFMNILMWWEEFEGKIPNPAILKPR--PIWTGKQVFNLIIPKQINLIRYSAW 529
Query: 487 ------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GF + GD + I+K EVL G + T+ S ++ I+ E GP+ +F
Sbjct: 530 HNESEKGFPTPGDTVVRIEKGEVLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI--------QALYSLLYHRMSTQNELV 591
Q L+ L GFS+ + D A + I + I Q + ++ +
Sbjct: 590 QWLVNYWLLQQGFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEPGRT 649
Query: 592 DLQ-IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
++ EN + V K + +S+ L ++ + S + + Q +G Q
Sbjct: 650 MMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ- 708
Query: 643 SDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSI 697
+ GK F +TL HF + D P ++ G ++ + GL P E H++
Sbjct: 709 NVEGKRIPYGFNGRTL-----PHFTK----DDKGPESR-GFVENSYLRGLTPQEFFFHAM 758
Query: 698 STREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ SE G + + L+ + D+++ YDGTVRN + + QF Y
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VTQFLYG 809
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 168/669 (25%), Positives = 292/669 (43%), Gaps = 78/669 (11%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D ++ +PVPP + DG++ DL+ + V + ++ R G P+ ++
Sbjct: 269 DWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQ 328
Query: 201 VESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
E LQ + +L E G ++ + S P T + L ++R + K
Sbjct: 329 FE-QLLQFHLATFLNNEQPGLPQAQQR-------SGKPLKTLRQRLRGKEGRIRGNLMGK 380
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 314
FS+R+VIT D ++++GVP IA +T ERV N+NY+ +L+ N
Sbjct: 381 RVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANG---PLEHP 437
Query: 315 SSSYSLREG----------SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
+ Y +RE +K L+ G +V R + D D V NR P+ HK S+ + V
Sbjct: 438 GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRV 497
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V D T ++N + P +ADFDGD ++L PQS+ A+A+ EL V K +++ +
Sbjct: 498 KVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPV 557
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL------SKARCSARW 474
+ + D+LL + K+ FL K + L M+ + +P PA+ + + W
Sbjct: 558 MGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNWDGKVPTPAILVPKKGELGKYTPIW 617
Query: 475 TALQILQSVLPP----GFDSC-------------GDRYLIKKSEVLKGDFDRDTIPSVIN 517
T QI +++P GF S R +I++ E+L G D+ I S
Sbjct: 618 TGKQIFSAIVPAINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAG 677
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-----QKE 572
+V EKGP+E ++Q L+ L F+V + D + L I Q +
Sbjct: 678 GLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAK 737
Query: 573 IQALYSLLYH----RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAV 628
+Q ++ L+ ++ TQ ++ + ++ + A+ G L ++ + A
Sbjct: 738 VQ-VHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKAT 796
Query: 629 SKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ F+ + Q + GK H+ + DL P ++ G ++
Sbjct: 797 VTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKD---DLG-PESR-GFVE 851
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V+ YDGTVRN
Sbjct: 852 NSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRN-AQ 910
Query: 741 NSIIQFDYA 749
IIQF Y
Sbjct: 911 GEIIQFLYG 919
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 165/628 (26%), Positives = 279/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVRRCDQEGAPAHVLNEFESL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 186 TLTYPEVVTPYNIHRLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDITLQYGWRV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M K+ FL+ F Q + +
Sbjct: 306 QSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLN--FDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P PA+ K + WT Q+L V+P G FD + +I+
Sbjct: 364 YWVPNWDGSIPHPAILKPK--PLWTGKQLLSMVIPKGINLQRFDDKNTLLSPRDNGMMIE 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G D+ T+ + ++ +I EKGP +FF +Q ++ L +GFS+ + D
Sbjct: 422 NGEIMYGVVDKKTVGATSGGLIHTIMREKGPTVTRDFFSGVQTVVNYWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIENHIRHVKML 605
+ NI I Q + +R+ T E + ++ + +
Sbjct: 482 TIADAKTMRNITNTIAQAKREVQQVILDAQANRLPPEPGMTLRESFEQKVSKVLNTARDT 541
Query: 606 VAKFILKSST----LGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+ S T + ++ S S + + Q + +G Q+ + GK HF
Sbjct: 542 AGRSAETSLTDMNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFSYRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G I+ + GL P E H++ RE I+ ++ +E G + + L+
Sbjct: 601 TKD-----DYSPESRGFIENSYLRGLTPQEFFFHAMVGREGIIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV + YD TVRN + I+QF Y
Sbjct: 656 KALEDVSVQYDCTVRNSLGD-ILQFVYG 682
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 177/697 (25%), Positives = 310/697 (44%), Gaps = 69/697 (9%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
+N+ +R+L+ E+ + K IP E KL F + +++ + P P IS
Sbjct: 6 ENEQPEKRVLTPG-EILNVFKHIPPEDCIKLGFHNDFARPEWLIISVLPVPPPPVRPSIS 64
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRG 218
+ D L +LK + + + G+P E ES LQ V Y++ + G
Sbjct: 65 FNDTQRGEDDLTYKLSDILKANINVQKLEMDGSPQHVINEFESL-LQFHVATYMDNDIAG 123
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ + S P + +A L+ ++R + K FS+R+VI+GD +++
Sbjct: 124 QPQALQK-------SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQ 176
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GH 327
+GVP IA+ +T+ E V +NI L ELV N D LR + G
Sbjct: 177 VGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGD 236
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFD
Sbjct: 237 IVLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFD 296
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDK 446
GD ++L PQS +AE++ + +V Q++S + + + D L ++ M + F++
Sbjct: 297 GDEMNLHVPQSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIE- 355
Query: 447 AFTQQL-AMFALSP----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC----- 491
+ Q + ++ +S +P+PA+ K + W+ Q+L +P G FD
Sbjct: 356 -YDQMMNILYWISDWDGVIPQPAILKPK--PLWSGKQMLSMTIPKGIHLQRFDEGTTLLS 412
Query: 492 --GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
+ LI E+L G D+ T+ + ++ ++ EKG + + F +Q ++ L
Sbjct: 413 PKDNGMLIVNGEILFGVVDKKTVGATNGGLIHTVMREKGAAQCADLFGKIQKVVNFWLLH 472
Query: 550 DGFSVSLED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQI 595
+GFS+ + D +++K + + E Q H M+ + D I
Sbjct: 473 NGFSIGIGDTIADAGTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMTLRESFEDNVI 532
Query: 596 E--NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
N R A+ LK + + ++ + S + + Q + +G Q S GK +
Sbjct: 533 RYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 592 FADRTLPHFAKD-----DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN N IIQF Y
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYG 682
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 148/546 (27%), Positives = 249/546 (45%), Gaps = 53/546 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++++GVP IA+ +T+ E V +NI L +LV N
Sbjct: 148 RLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEIVTPYNIQRLSQLVQN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R + D D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGWTVERHLQDDDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L V Q++S
Sbjct: 268 MMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELTQLAMVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSA 472
+ + + D+L + K+ + FL+ + Q + + P +P PA+ K +
Sbjct: 328 QSNKPVMGIVQDSLCGIRKLTLRDTFLN--YEQVMNVLLWVPDWDGQVPIPAIMKPK--P 383
Query: 473 RWTALQILQSVLPPGFD-----------SCGDR-YLIKKSEVLKGDFDRDTIPSVINEIV 520
WT QI+ +P G + S D LI+ E++ G D+ T+ + +V
Sbjct: 384 LWTGKQIVSLCIPKGINLIRIDDNNPLSSPKDNGMLIENGEIIFGVVDKKTVGATGGGLV 443
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
+I EKGP+ FF +Q ++ L +GFS+ + D A + +I I A +
Sbjct: 444 HTIMREKGPQVCCNFFTGIQMVVNYWLLHNGFSIGIGDTIADAATMRDITNTITAAKEKV 503
Query: 581 YH--RMSTQNELVD--------------LQIENHIRHVKMLVAKFILK-SSTLGYLIDSK 623
R + +N L Q N R A+ LK ++ + ++ +
Sbjct: 504 QDIIRDAQENRLPAEPGMTLRESFEHKVSQTLNQARDTTGRSAEMSLKDTNNVKQMVTAG 563
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q + +G Q+ + GK + HF + +Y G I+ +
Sbjct: 564 SKGSFINISQMSACVGQQIVE-GKRIPFGFKDRSLPHFTKD-----DYSPESKGFIENSY 617
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H+++ RE ++ ++ +E G + + L+ L D+++ YDGT RN + +
Sbjct: 618 LRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-V 676
Query: 744 IQFDYA 749
IQF Y
Sbjct: 677 IQFVYG 682
>gi|327401232|ref|YP_004342071.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
gi|327316740|gb|AEA47356.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
Length = 871
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 180/697 (25%), Positives = 301/697 (43%), Gaps = 91/697 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+++E L++IP++ L G P+ + +L LPVPP + I + DL
Sbjct: 174 DIRERLEKIPDDD---LPAFGMDPKAVRPEWMVLTVLPVPPVTVRPSIILETGQRSEDDL 230
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ ++ + + + +G P +++ LQ V YL EV G +
Sbjct: 231 THKLVDIIRINQRFMENKEAGAPQLILEDL-WELLQYHVTTYLDNEVSGIPPARHR---- 285
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FS+R+VI+ D +NE+GVP IA+ +
Sbjct: 286 ---SGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPKVIAEEL 342
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSKGHTF----------LRPGQ 334
T V NI +E V L ++Y +R +G + L PG
Sbjct: 343 TVPFYVTEKNIEEAREYV-----LRTEHPKANYIIRPDGRRIRVMDTNREELAEKLEPGM 397
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R++ DGD V NR P+ H+ S+ A V V T ++NP +C P +ADFDGD ++L
Sbjct: 398 IVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTFRLNPAVCPPYNADFDGDEMNLH 457
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
PQSL A+AE L +V++ +LS G + D + L ++ + +K FT++ AM
Sbjct: 458 VPQSLEAQAEAKVLMAVQEHILSPRFGGPIIGGIHDHISGLYLLTRG---EKLFTREEAM 514
Query: 455 -----FALSPLPRPALSKARCSARWTALQILQSVLPP-----GFDSCG------------ 492
++ LP P K + WT Q+ +LP + C
Sbjct: 515 SILKALNITELPEP---KYKEKLLWTGKQLFSLILPDISIEFKAEICQGCEECKKEECEY 571
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D Y +IK E++ G D + + I+ I + G EE F D++ L + + G
Sbjct: 572 DAYVIIKNGELICGTIDEKAVGAFKGIIIDEIMRKYGSEETKRFIDNMTQLAIRAIMYTG 631
Query: 552 FSVSLEDFSLSKAALWNIQKEIQA----------------LYSLLYHRMSTQNELVDLQI 595
FS + D + + A+ I + I L + + E+ +Q+
Sbjct: 632 FSFGISDEDIPEEAVSQIHEVISEAEKKVEELIKAYREGNLEPMPGRSIEETLEMKIMQV 691
Query: 596 ENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK--T 652
R + ++F+ ++ + S + ++ + Q A +G Q S RG+ + T
Sbjct: 692 LGKARDQAGKIASRFLGMDNSAVIMAVSGARGSMLNLTQMAACIG-QQSVRGERIKRGYT 750
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF+ P DL G ++ + GL+P E H++ RE +V ++ S+
Sbjct: 751 YTNRTLPHFK---PGDLG--AKARGFVRSSYKEGLNPIEFFFHAMGGREGLVDTAVRTSQ 805
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G L + L+ L+D+ + YDGTVR S ++QF Y
Sbjct: 806 SGYLQRRLINALQDLKVEYDGTVREQTSGLLVQFRYG 842
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 13 QIVGIRFGLATQKEICTASIS---------DCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I GIRF + + +EI S++ D + L +P LG+ +C +CG
Sbjct: 5 RISGIRFEVLSPQEIRRMSVAKIITPETYDDDGFPIEAGLMDPRLGVIDPGLRCRTCG-G 63
Query: 64 EPGKCEGHFGYIELPIPIYH 83
+ G+C GHFG+IEL P+ H
Sbjct: 64 KAGECPGHFGHIELAAPVIH 83
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 172/685 (25%), Positives = 298/685 (43%), Gaps = 72/685 (10%)
Query: 120 MLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
+LKRI ++ + L Y D IL+ LP+PP + + D S DL+ +
Sbjct: 220 VLKRISDDDCRLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMI 279
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVDARFGV 232
+ + + + G P E + LQ V Y + R T +S R + +
Sbjct: 280 IRHNENLKKQEKGGAPAHIISEF-AQLLQFHVATYFDNELPGQPRATQRSGRPIKSIC-- 336
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
S KA ++R + K FS+R+VIT D ++++GVP+ IA +T+ E V
Sbjct: 337 -----SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVT 391
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMD 342
+NI L+ELV+ + Y +R+ + L G V R + D
Sbjct: 392 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +
Sbjct: 452 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---S 458
AEVLEL V K ++S + + + D LL + + K+ F++K + M+
Sbjct: 512 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571
Query: 459 PLPRPALSKARCSARWTALQILQSVLPP----------------GFDSCGDRYL-IKKSE 501
+P PA+ K R WT Q+ ++P G + GD + I+K E
Sbjct: 572 KVPAPAILKPR--PLWTGKQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGE 629
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+L G + T+ + ++ I+ E GP+ +F Q L+ L +GFS+ + D
Sbjct: 630 LLSGTVCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIA 689
Query: 562 SKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ--------IENHIRHV--------KM 604
A + I + I + + + QN+ ++ + EN + V
Sbjct: 690 DAATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGS 749
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
K + +S+ L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 750 SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPYGFIDRTLPHFTKD 808
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ +
Sbjct: 809 -----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 863
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGTVRN + +IQF Y
Sbjct: 864 EDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 43.5 bits (101), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P G L G KCE+C T+ +C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTIDRKMKCETC-TANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P++H
Sbjct: 77 PGHFGHLELAKPMFH 91
>gi|310799174|gb|EFQ34067.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1342
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 176/708 (24%), Positives = 297/708 (41%), Gaps = 107/708 (15%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 138 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 196
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P E + LQL V Y L+ G K+ R R Q
Sbjct: 197 GSPVQTIME-QWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQRLKGKQG--------- 246
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV+ +NI L+E V
Sbjct: 247 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIAKLKECVR 305
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + DG SL+ G++ LR G VV R + D D V NR P+
Sbjct: 306 NGPNIWPGAQQVIKKDDGGYKISLKFGNRNQVAQDLRIGDVVERHLEDNDIVLFNRQPSL 365
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 366 HKLSIMSHLVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHN 425
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALS-----PLPRPALSK 467
L + NG + D + + ++ K +F K FT + M + LP PA+ K
Sbjct: 426 LATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTFT-YICMHMMDGKVHLDLPPPAVLK 484
Query: 468 ARCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEV 502
+ A WT Q+ ++ P +S C D +I+ SEV
Sbjct: 485 PK--ALWTGKQVFNMMMRPNKESPVKINLDAKCREYKARAGQCPDMDPEDAWLVIRNSEV 542
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G D+ T+ + V + GP+ + + L L +L GFS+ + D
Sbjct: 543 MCGVMDKSTVGDGKKDSVFYVILRDFGPDAAVATMNRLAKLCARHLTNRGFSIGIGD--- 599
Query: 562 SKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLID 621
++ +K ++ +L+ + L+D +N + + L++S G L
Sbjct: 600 ----VFPTEKLLEKKSTLVKTASLEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSK 655
Query: 622 SKSDSAVS------------------------KVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
++ + V Q +G Q+ GK + +
Sbjct: 656 VRTQAGAHCIETLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIG-GKRVADGFQDRT 714
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + P P +K G ++ F+ GL P E + H++S RE +V ++ +E G +
Sbjct: 715 LPHFHKNAPQ----PPSK-GFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMS 769
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+ LM L D+ YD TVR I+QF + + + + +PV
Sbjct: 770 RRLMKSLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEASAKPV 816
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 248/546 (45%), Gaps = 56/546 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGRLHQLVQN 408
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDG+ G L G V R ++DGD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +PRPA+ K R RW
Sbjct: 529 QRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPEWNGVIPRPAILKPR--PRW 586
Query: 475 TALQILQSVLPP------GFDSCG---DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
T QI+ V+P G D D LI+ E++ G + ++ + I+ F
Sbjct: 587 TGKQIMSLVIPKTINLRMGNDDTALKDDGLLIQTGELMYGLPTKKSVGASGGGIIHICFN 646
Query: 526 EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--R 583
E G + + F + Q ++ L +G S+ + D KA + +Q++I +
Sbjct: 647 ELGSDGAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDKATIEKVQEQIDTQKEEVRRLTA 706
Query: 584 MSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------SKSDSA 627
M+T NEL L EN + + A+ ++T L D S S +
Sbjct: 707 MATANELEALPGMNIRETFENKVSKA-LNTARDKAGTTTQESLKDINNAVTMARSGSKGS 765
Query: 628 VSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
+ Q +G Q+ + + F +TL HF + D P A+ G ++ +
Sbjct: 766 SINISQMTALVGQQIVEGRRIPFGFKYRTL-----PHFTK----DDYSPEAR-GFVENSY 815
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H+++ RE ++ ++ +E G + + L+ L DV YDGTVRN + +
Sbjct: 816 LRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGD-V 874
Query: 744 IQFDYA 749
IQF Y
Sbjct: 875 IQFVYG 880
Score = 46.6 bits (109), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
I+F + + +EI S++ A + +P LG KC++C T
Sbjct: 19 IQFSMMSPEEIKNLSVAHIVYPEAMDETKTKPRDGGVNDPLLGSVDRQFKCKTC-TENMS 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I + K
Sbjct: 78 ECPGHFGHIELAKPVYHPGFIKKTK 102
>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1457
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 184/703 (26%), Positives = 311/703 (44%), Gaps = 87/703 (12%)
Query: 133 AGKGYFPQDGYILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSR 190
+G+G P+ YI YLP PP C+ P + SD ++ DL++ L +++ +IR+
Sbjct: 246 SGRGGRPET-YIWRYLPAPPVCIR-PSVMMSDSPTSNEDDLTVK-LTEIVWTSSLIRAGI 302
Query: 191 SGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTL 250
+ + + + LQL+V Y+ + + + S P L+ +
Sbjct: 303 EKGISINNLMEQWDYLQLSVAMYINSDAASPAMLPGASAAAKSAKPIRGLCQRLKGKQGR 362
Query: 251 FIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
F SG FS R+VI+ D R++E+ VP +A+ +T+ E +N LQ L+ N
Sbjct: 363 FRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPETCTRYNKEKLQRLILNG 422
Query: 307 LC-------LTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKH 357
L + + +LR G + L+ G VV R + DGD V NR P+ H+
Sbjct: 423 PTEHPGANYLLKKNEDARRNLRYGDRNKLAKNLQYGDVVERHLEDGDVVLFNRQPSLHRL 482
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+
Sbjct: 483 SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 542
Query: 418 SHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCS 471
+G + D + S + K F D+A FTQ L+M + LP PA+ K
Sbjct: 543 PKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGDLQFDLPPPAIHKP--V 600
Query: 472 ARWTALQILQSVLPP--------GFDSCGDRY------------------LIKKSEVLKG 505
WT Q+ ++ P D+ + +I+ S++L G
Sbjct: 601 YMWTGKQVFSLLIKPNKKSPVVINLDAKNKAFTPPAKGLPMEMSPNDGFVIIRGSQILSG 660
Query: 506 DFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
D+ T+ + + +I + GP+E + + L L GFS+ + D +
Sbjct: 661 VMDKSTLGDGKKHSVFYTILRDYGPKEAATAMNRMAKLCARFLGNRGFSIGISDVT-PGV 719
Query: 565 ALWNIQKE-IQALYS------LLYH--RMSTQ-----NELVDLQIENHIRHVKMLVAKFI 610
AL N ++E ++A Y+ LY ++ TQ + ++ +I + V+ V +
Sbjct: 720 ALKNTKEEMVEAAYAKCDELIKLYSEGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVC 779
Query: 611 ---LKSSTLGYLIDS-KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFE 662
L SS ++ + S + V Q +G Q+ + F ++L HF
Sbjct: 780 INELDSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL-----PHF- 833
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 834 ---PKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 889
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR SN I+QF Y + + +PV
Sbjct: 890 SLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPFDMEGDAKPV 931
Score = 40.0 bits (92), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQLA-----------NPFLGLPLEFGKCESCGT 62
I GI FG ++K+I S + S L + +G+ +C C
Sbjct: 13 IKGIEFGALSEKDIVAQSEVEVSTRDLFDLEEGRKPKKNGALDSHMGISSNSSECSVC-K 71
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQ 98
C GHFG+++LP+P++ H+ K T+ Q
Sbjct: 72 GNLATCHGHFGHLKLPLPVF---HVGYFKATIQVLQ 104
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 189/763 (24%), Positives = 330/763 (43%), Gaps = 81/763 (10%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
E+ G E K +GH G Y PS I L + A + D ++++ +
Sbjct: 167 VENQGAEEAAKKQGHGGCGR-----YQPS-IRRSGLDLTAEWKHVNEDSQEKKVVLTAER 220
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
V E+ +++ EE + L F + D ++ LPVPP + + G + DL+ +
Sbjct: 221 VWEIFRQVSEEECQILGMDPRFTKPDWMLITVLPVPPLAVRPAVVMFGSARNQDDLTHKL 280
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDAR 229
V E+IR+ +SG E LQ V ++ R KS R + +
Sbjct: 281 ADIVKANNELIRNEQSGAAAHIIAETLKM-LQFHVATLVDNEMPGLPRAMQKSGRPLKS- 338
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+ Q K+ ++R + K FS+R+VIT D R++E+GVP IAQ +TF E
Sbjct: 339 --IKQ----RLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRSIAQNLTFPE 392
Query: 290 RVNVHNINYLQELV---DNKLC---LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMD 342
V N++ + ELV +N+ D LR K L+ G V R + +
Sbjct: 393 IVTPFNMDKMHELVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYRVERHVRN 452
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR PT HK S+ + V T ++N + P +ADFDGD ++L PQSL +
Sbjct: 453 GDIIVFNRQPTLHKMSMMGHRIKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETR 512
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---S 458
AEV +L V +Q+++ + + + D L +++ M K+ FL+K + MF
Sbjct: 513 AEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDG 572
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLI 497
+P PA+ K + WT QI ++P + S GD + LI
Sbjct: 573 KMPMPAILKPK--PLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVLI 630
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ E++ G + T+ + ++ +F E G + F+ +Q ++ L +G ++ +
Sbjct: 631 EHGELISGIVCKKTVGASSGSLMHVVFNELGHQVAGLFYGHIQTVVNAWLLLEGHTIGIG 690
Query: 558 DFSLSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQIENHIRHV------KML----- 605
D K +I+ I+ A + ++ N+ ++ N +R ++L
Sbjct: 691 DTIADKQTFIDIKNTIEKAKHDVIDVIEKAHNDELEPSPGNTLRQTFENQVNRILNDARD 750
Query: 606 -----VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + + + ++ S + + + Q +G Q + GK + H
Sbjct: 751 KTGASAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVG-QQNVEGKRIPFGFRKRTLPH 809
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 810 F-----IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL 864
Query: 721 MAVLRDVVICYDGTVRNVCSNS-IIQFDYAVNARKSHSLFPAG 762
+ + V+I YDGTVRN SNS +IQ Y + ++ P G
Sbjct: 865 IKAMESVMIAYDGTVRN--SNSQVIQLRYGEDGLDGVAVDPFG 905
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 167/630 (26%), Positives = 275/630 (43%), Gaps = 71/630 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 275 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 333
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 334 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 386
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + +DG G L G V
Sbjct: 387 TLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKV 446
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +M GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 447 ERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 506
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FL K ++
Sbjct: 507 QSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKLCRRDVFLTKEQIMNCMLW 566
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP------GFDSC------GDRYLIKKS 500
+ +P+PA+ K R RWT Q++ V+P G DS + LI+
Sbjct: 567 VPNWDGVIPQPAIYKPR--PRWTGKQLISMVIPKEVSLFNGTDSGENAPLKDEGLLIQAG 624
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + I + IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 625 QLMYGLLTKKNIGAAAGGIVHISYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTI 684
Query: 561 LSKAALWNIQKEIQALYSLLYH--RMSTQNEL-------VDLQIENHIR--------HVK 603
A + +Q I + + M+T NEL V EN +
Sbjct: 685 PDAATIAKVQVHIDEEKAEVARLTAMATANELEALPGMNVRATFENKVSMALNQARDKAG 744
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
K + S+ + S S + + Q +G Q+ + + F +TL
Sbjct: 745 TTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----P 799
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 800 HFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRR 854
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+ YDGTVRN + I+QF Y
Sbjct: 855 LVKALEDLSARYDGTVRNSLGD-IVQFLYG 883
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I++ L +P LG +C++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHITYPETMEENKTKPRDGGLNDPLLGSIDRQFRCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL P+YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 188/766 (24%), Positives = 319/766 (41%), Gaps = 85/766 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A + D ++++ S V E+LK I +E + L F +
Sbjct: 182 YQPS-IRRSGLDLTAEWKHVNEDSQEKKIVLSAERVWEILKHITDEECRTLGMDPQFARP 240
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + + E+IR+ ++G + S+
Sbjct: 241 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAAAHILSE 300
Query: 200 EVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
V+ LQ V ++ R KS + + A S K ++R +
Sbjct: 301 NVKM--LQFHVATLVDNDMPGLPRAMQKSGKPLKAI-------KSRLKGKEGRIRGNLMG 351
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC----- 308
K FS+R+VIT D R++++GVP IAQ +TF E V N + + ELV
Sbjct: 352 KRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFDKMHELVRRGNSQYPGA 411
Query: 309 -LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 412 KYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 471
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ +
Sbjct: 472 LPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMG 531
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ D L +++ M K+ F++K L MF +P+PA+ K + WT Q+
Sbjct: 532 IVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILKPK--PLWTGKQVFSL 589
Query: 483 VLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVT 521
++P + S GD + +++ E++ G + T+ + ++
Sbjct: 590 IIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELMMGILCKKTLGTSAGSLLH 649
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY 581
+ E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 650 ICYLELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPNTYMEIQKAIKKAKEDVI 709
Query: 582 ------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKS 624
H M T + EN + + K + + + L ++ S S
Sbjct: 710 EVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGS 769
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ + Q +G Q + GK + HF + +Y G ++ +
Sbjct: 770 KGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYL 823
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +I
Sbjct: 824 AGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLI 882
Query: 745 QFDYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYKAVLDSSPSS 788
Q Y + AGE V L +SN A++ P++
Sbjct: 883 QLRYGEDGL-------AGETVEFQNLPTVKLSNKAFERRFKFDPTN 921
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 176/692 (25%), Positives = 308/692 (44%), Gaps = 94/692 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVRRCDQEGAPAHVVNEFEAL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPYNIHKLSQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEISLQYGWRV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ L +V Q++S + + + D+L ++ M K+ FL ++ Q + +
Sbjct: 306 QSEETRAELRMLCAVPLQIVSPQSNKPVMGIVQDSLCGVRKMTKRDSFL--SYDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FD------SCGDR-YLIK 498
P +P+PA+ K + A WT Q++ V+P G FD S D +I+
Sbjct: 364 FWVPNWDGVIPQPAILKPK--AYWTGKQMMSMVIPKGINMQRFDDKNTLLSVRDNGMMIE 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G D+ T+ + ++ +I +KGP +F +Q ++ L +GFS+ + D
Sbjct: 422 NGEIMYGVVDKKTVGATSGGLIHTIMRDKGPVPTRDFIGGVQTVVNYWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNI-------QKEIQALY------SLLYHRMSTQNELVDLQIENHIRHVKML 605
+ NI +KE+Q L L T E + ++ + +
Sbjct: 482 TIADAKTMRNITNTISQAKKEVQQLILDAQANVLPAEPGMTLRESFEQKVSKVLNQARDT 541
Query: 606 VAK----FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDI 657
+ + ++ + ++ + S + + Q + +G Q+ + + F +TL
Sbjct: 542 AGRSAETSLTDANNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFSYRTL---- 597
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G I+ + GL P E H+++ RE I+ ++ +E G +
Sbjct: 598 -PHFTKD-----DYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQ 651
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPA 777
+ L+ L DV++ YD TVRN + ++QF Y + L AT +
Sbjct: 652 RRLVKALEDVMVKYDATVRNSLGD-VVQFVYGEDG---------------LDATYVE--- 692
Query: 778 YKAVLDSSPSSNNSWELMKEILLCRVSFNNDP 809
K V+DS SN+ +E +I L F P
Sbjct: 693 -KQVIDSMSGSNDRFEHRFKIDLMDPEFTLKP 723
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 187/715 (26%), Positives = 302/715 (42%), Gaps = 114/715 (15%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
+ QR+ CE+ ++ R PE +L +LPVPP C+ DGVS
Sbjct: 243 ILQRITDQDCELLDIADR-PEH---------------LLLTHLPVPPCCIRPSVEMDGVS 286
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSG-----TPNFESQEVESNDLQLAV-------GQY 213
+ D I M K+++ +E+ R G T N + + +Q A+ G
Sbjct: 287 GSNED-DITM--KLIQIIEVNNVLRQGLEKGLTINNLMENWDFLQIQCAMYINSELPGLS 343
Query: 214 LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
L+ +G K R R K + R K FS+R+VI+ D ++
Sbjct: 344 LQYQGPGKPLRGFVQRL----------KGKQGRFRGNLSGKRVDFSARTVISPDPNLGID 393
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGS-- 324
E+G+P IA+ +T+ E VN HNI L+E V N + + ++ G Y L+ G
Sbjct: 394 EVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPGANFVKFASGGMQY-LKYGDRR 452
Query: 325 KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
K + LR G +V R + DGD + NR P+ HK S+ A V T+++N +C P +A
Sbjct: 453 KIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARVMPCRTLRLNECVCTPYNA 512
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF--KKY 442
DFDGD +++ PQ+ A+AE ++L V L + NG + L AT L+ + K
Sbjct: 513 DFDGDEMNIHCPQTEEARAEAMQLMGVHHNLCTPKNGEI-LVAATQDFLTAAFLLTAKDV 571
Query: 443 FLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFDS------- 490
F D++ QL + LP PA+ K WT QI ++ P
Sbjct: 572 FFDRSQVGQLVAYMGDALLSVDLPTPAIVKP--IEMWTGKQIFGMLIRPKASDQIFVNLE 629
Query: 491 -------------C-GDRYL-IKKSEVLKGDFDRDTIPSV-INEIVTSIFFEKGPEEVLE 534
C D Y+ I+ SE++ G + T+ S N + + E GP +
Sbjct: 630 VAEKLYNKKDKTMCPDDGYVCIQNSEIMAGRLGKATLGSGNKNGLFYVLNIEYGPVAAAD 689
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-------- 586
+ L L L GFS+ ++D S + Q+ I+ Y+ R+++
Sbjct: 690 AMNRLAKLSARWLGTRGFSIGIDDVSPAAELEAEKQRRIEDGYATCDQRIASYEKGTLPL 749
Query: 587 -----QNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSDSA-VSKVVQQ 634
E ++ ++ + V+ L+ + + L SK + +S++V
Sbjct: 750 QAGCNAEETLEAEVLGVLSSVREAAGNACLQALPRHNAPLIMALCGSKGSTINISQMVAC 809
Query: 635 AGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMT 694
G Q + G HF+R P AK G + F+ G+ P E
Sbjct: 810 VG----QQAVSGSRPPDGFAHRSLPHFKR----GEKTPAAK-GFVANSFYSGMRPTEFFF 860
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE +V ++ +E G + + LM L D+ + YDGTVRN I+Q Y
Sbjct: 861 HTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLSYDGTVRN-SMGGIVQLRYG 914
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 168/643 (26%), Positives = 284/643 (44%), Gaps = 75/643 (11%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
DG DL+ ++ + + R G P E E+ LQ Y+ E+ G
Sbjct: 18 DGAGRGEDDLTHKLVDILKANQNVRRCESEGQPAHVISEFETL-LQFHCATYMDNEMAGQ 76
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VITGD V+E+
Sbjct: 77 PQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEV 129
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---------- 325
GVP IA+ +T+ E V NI++LQELV N + Y +R+ +
Sbjct: 130 GVPRSIARNLTYPELVTRLNIDHLQELVRNG---PSEHPGAKYVIRDTGERIDLKHYKRA 186
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
G L+ G V R I DGD V NR P+ HK S+ V V T ++N + P +AD
Sbjct: 187 GEVRLQIGWKVERHIDDGDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNAD 246
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD +++ PQS+ KAE++E+ V KQ++S + + + D L +++ K+ FL
Sbjct: 247 FDGDEMNMHIPQSVETKAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 306
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRY------ 495
+ + M+ +P P + K WT QIL ++P G +S R+
Sbjct: 307 TRDLVMNILMWVPDWDGHIPIPCILKP--VPMWTGKQILSIIIPKGVNSDNLRHSTHPDN 364
Query: 496 ------------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
LI+ E+L G + T+ + ++ I E GPE F + Q ++
Sbjct: 365 ETSDISPGDTKVLIEDGELLSGIVCKKTVGTSQQGLIHVIMQELGPEAAKNFLNGCQGVV 424
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH-RMSTQNELVDLQIENHIRHV 602
L +GFS+ + D K + +I + I S + + Q + ++ Q IR
Sbjct: 425 NYWLLQNGFSIGIGDTIADKDTIESIAQTISNAKSRVQEIIIQAQQDKLEPQPGMTIRKT 484
Query: 603 ------KML----------VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
K L K + + + + ++ S S + + Q + +G Q + G
Sbjct: 485 FENKVNKELNTARDAAGRSAEKSLGEYNNVKQMVISGSKGSFINISQMSACVG-QQNVEG 543
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K HF + D + P ++ G ++ + GL P E H++ RE ++ +
Sbjct: 544 KRIPFGFKYRTLPHFTK----DDHSPESR-GFVENSYLRGLTPTEFFFHAMGGREGLIDT 598
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L DV++ YDGTVRN + +I+F Y
Sbjct: 599 AVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-VIRFCYG 640
>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1456
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 178/708 (25%), Positives = 300/708 (42%), Gaps = 107/708 (15%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 252 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 310
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P E + LQL V Y L+ G K+ R R Q
Sbjct: 311 GSPVQTIME-QWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV+ +NI L+E V
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKLKECVR 419
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + DG SL+ G++ L+ G VV R + D D V NR P+
Sbjct: 420 NGPSIWPGAQQVIKKDDGGYKISLKFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSL 479
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 480 HKLSIMSHLVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHN 539
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALS-----PLPRPALSK 467
L + NG + D + + ++ K +F K FT + M + LP PA+ K
Sbjct: 540 LATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTFT-YICMHMMDGKVHLDLPPPAVLK 598
Query: 468 ARCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEV 502
+ A WT Q+ ++ P DS C D +I+ SEV
Sbjct: 599 PK--ALWTGKQVFSMMMRPNKDSPVKINLDAKCREYKARAGQCPDMDPEDAWLVIRNSEV 656
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G D+ T+ + V + GP+ + + L L +L GFS+ + D
Sbjct: 657 MCGVMDKSTVGDGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGIGD--- 713
Query: 562 SKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLID 621
++ +K + +L+ + + L+D +N + + L++S G L
Sbjct: 714 ----VFPTEKLLDKKRTLVKNASIEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSK 769
Query: 622 SKSDSA------VSK------------------VVQQAGFLGLQLSDRGKFYSKTLVEDI 657
++ + +SK V Q +G Q+ GK + +
Sbjct: 770 LRTQAGSHCIETLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIG-GKRVADGFQDRT 828
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + P P +K G ++ F+ GL P E + H++S RE +V ++ +E G +
Sbjct: 829 LPHFHKNAPQ----PPSK-GFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMS 883
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+ LM L D+ YD TVR I+QF + + + + +PV
Sbjct: 884 RRLMKSLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEASAKPV 930
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 1 MEENTSSTILEGQIV--------GIRFGLATQKEICTASISDCS-----------ISHAS 41
M T+ T ++ Q+V GI+FG+ + ++I ++ + S +
Sbjct: 1 MATTTTVTPVKSQLVDKLPKRFKGIKFGIQSNQDIANQAVLEVSDRLLYDIEKNRAPYQH 60
Query: 42 QLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQI 101
+P LG + GKC +C S C GHFG++ LP+P + HI L+ M Q
Sbjct: 61 GPLDPRLGTSSKTGKCATCQESLQN-CTGHFGHVRLPLPAF---HIGYLRFVMMILQDIC 116
Query: 102 KNDGVAQRLLSSCCEVKEMLKRI 124
K+ G ++L + E + LK +
Sbjct: 117 KDCG---KVLLTESEKRAFLKEL 136
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 178/723 (24%), Positives = 306/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I + L + A I D +++ S V E+LK I +E L F +
Sbjct: 181 YQPS-IRRIGLDLTAEWKHINEDSQEKKISLSAERVWEILKHITDEECFILGMDHKFARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP C+ + G + DL+ + + E++R+ ++G + S+
Sbjct: 240 DWMIITVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVISE 299
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 300 NIKMLQFHVATLIDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 353 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 412
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 413 IVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 472
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 473 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 532
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K + MF +P+P++ K + WT Q+ ++
Sbjct: 533 QDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPSIMKPK--PLWTGKQVFSLII 590
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 591 PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 650
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 651 MLELGHEVCGQFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 710
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ S S
Sbjct: 711 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 770
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 771 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 824
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 825 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQL 883
Query: 747 DYA 749
Y
Sbjct: 884 RYG 886
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 245/538 (45%), Gaps = 37/538 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 329
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSP 449
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K R +W
Sbjct: 450 QRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVLLWVPDWDGVIPQPAIIKPR--PKW 507
Query: 475 TALQILQSVLPPGFDSC------------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QI+ V+P G + D + E++ G ++ T+ + + ++
Sbjct: 508 TGKQIISLVIPEGLNLIRKDKKESFSPINDDGVFVSGGELMYGLLNKKTVGASSSGLIHI 567
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
I+ E GP+ + FF+ Q ++ L +GFS+ + D + + I+ + +
Sbjct: 568 IYNELGPQAAMNFFNGAQTVINYWLLHNGFSIGIGDTIPDRDTIQLIENAVNKRKDEVAE 627
Query: 583 --RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFL 638
R +T+NEL L N + V+K + + + S ++ +Q A G
Sbjct: 628 LTRSATENELEPLPGMNVRETFESKVSKALNTARDDAGTVTEDSLKDLNNAIQMARSGSK 687
Query: 639 G--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYE 691
G + +S + VE F R P +Y G ++ + GL P E
Sbjct: 688 GSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTE 747
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ + DV+ YDGTVRN + ++QF Y
Sbjct: 748 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMAKYDGTVRNSLGD-VVQFVYG 804
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 179/723 (24%), Positives = 313/723 (43%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y PS I L + A I D +++ + V E+LK + EE L Y
Sbjct: 184 YQPS-IRRSGLDLTAEWKHINEDSQEKKIALTAERVWEILKHVSEEECMILGMDPRYAKP 242
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D ++ LPVPP + + G + DL+ + V E++R+ SG + ++
Sbjct: 243 DWMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELLRNEASGAAAHIIAE 302
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A E+ G ++ + S P + K L+ ++R + K
Sbjct: 303 NIKMLQFHVATLVDNEMPGLPRAMQK-------SGRPLKSIKQRLKSKEGRIRGNLMGKR 355
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV---DNKLC---L 309
FS+R+VIT D R+NE+GVP IAQ +TF E V NI+ + +LV +N+
Sbjct: 356 VDFSARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNIDKMHDLVRRGNNQYPGAKY 415
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD + NR PT HK S+ + V
Sbjct: 416 IIRDNGERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNRQPTLHKMSMMGHKIKVLP 475
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL +AEV +L V +Q+++ + + +
Sbjct: 476 WSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIV 535
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K + MF +P PA+ K + WT QI ++
Sbjct: 536 QDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAVLKPK--PLWTGKQIFSLII 593
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + LI+ E++ G + T+ + ++ +
Sbjct: 594 PGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVV 653
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ-ALYSLLYH 582
F E G E F+ +Q ++ L +G ++ + D K +I+ I+ A + ++
Sbjct: 654 FAELGHEVAGAFYGHIQTVVNAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDV 713
Query: 583 RMSTQNELVDLQIENHIRHV------KML----------VAKFILKSSTLGYLIDSKSDS 626
N+ ++ N +R ++L K + + + ++ S +
Sbjct: 714 IEKAHNDELEPSPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKG 773
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 774 SKINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 827
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V+I YDGTVRN + +IQ
Sbjct: 828 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRN-SNGQVIQL 886
Query: 747 DYA 749
Y
Sbjct: 887 RYG 889
>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
Length = 871
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 159/607 (26%), Positives = 274/607 (45%), Gaps = 67/607 (11%)
Query: 191 SGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE--- 245
+G P+ +E ES LQ V Y++ + G ++ + S P + +A L+
Sbjct: 95 NGAPHHTIEEAESL-LQFHVATYMDNDIAGQPQALQK-------SGRPVKSIRARLKGKE 146
Query: 246 -KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L LV
Sbjct: 147 GRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVR 206
Query: 305 NK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
N D LR + G L+ G V R ++D D V NR P+ HK
Sbjct: 207 NGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSLHKM 266
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V +Q++S
Sbjct: 267 SMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVS 326
Query: 418 SHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCS 471
+ + + D L + K+ + F++ Q L M P +P PA+ K +
Sbjct: 327 PQSNKPCMGVVQDTLCGIRKLTLRDNFIE--LGQVLNMLYWVPDWDGVIPTPAILKPK-- 382
Query: 472 ARWTALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEI 519
WT Q+L +P G FD + L+ +++ G D+ T+ S +
Sbjct: 383 PLWTGKQLLSVAIPKGIHLQRFDEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGL 442
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLSKAA 565
+ + EKGP+ F ++Q ++ GFS + D + +K
Sbjct: 443 IHVVTREKGPQVCATLFSNIQKVVNYWFLHCGFSTGIGDTIADGQTMRQITEAIAEAKVK 502
Query: 566 LWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKSST-LGYLIDS 622
+ ++ KE QA H M+ + D ++ N R +A+ L + + ++ +
Sbjct: 503 VEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSA 562
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q + +G Q S GK + V+ HF + +Y G ++
Sbjct: 563 GSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHFSKD-----DYSPESKGFVENS 616
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H++ RE ++ ++ +E G + + L+ L D+++ YDGT RN N
Sbjct: 617 YLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN- 675
Query: 743 IIQFDYA 749
IIQF Y
Sbjct: 676 IIQFIYG 682
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 184/739 (24%), Positives = 311/739 (42%), Gaps = 84/739 (11%)
Query: 58 ESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDG-------VAQRL 110
E T EP K G G + I + ++E K + KND V ++
Sbjct: 88 EQQDTDEPVKKRGGCGAQQPNITVDGMKMVAEFKAP------KKKNDDQEQLPEPVERKQ 141
Query: 111 LSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSS 169
+ S V +LKRI +E L F + D IL+ LP+PP + + D S
Sbjct: 142 ILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSED 201
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + R R+G P E + LQ + Y + R T +S
Sbjct: 202 DLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNELPGQPRATQRSG 260
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S KA ++R + K FS+R+VIT D ++E+GVP+ IA
Sbjct: 261 RPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIAL 313
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPG 333
+T+ E V +NI L+ELV+ + Y +RE + L G
Sbjct: 314 NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELG 373
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 374 YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 433
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
PQS +AEVLEL V K ++S + + + D LL + + K+ ++K +
Sbjct: 434 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNI 493
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGD 493
M+ +P PA+ K R WT Q+ ++P GF + GD
Sbjct: 494 LMWWEDFDGKVPAPAILKPR--PIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGD 551
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L +GF
Sbjct: 552 TMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 611
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS------LLYHRMSTQNELVDLQIENHIRHVKMLV 606
S+ + D A + I + I + H + E +E+ V ++
Sbjct: 612 SIGIGDTIADAATMVKINETISKAKDDVKELIMQAHDKQLEAEPGRTMMESFENRVNQVL 671
Query: 607 -----------AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
K + +S+ L ++ + S + + Q +G Q + GK ++
Sbjct: 672 NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFID 730
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G
Sbjct: 731 RTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 785
Query: 716 LFKNLMAVLRDVVICYDGT 734
+ + L+ + D+++ YDGT
Sbjct: 786 IQRRLVKAMEDIIVKYDGT 804
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 179/718 (24%), Positives = 301/718 (41%), Gaps = 107/718 (14%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGV 164
R + + E +L+RI EE K + G+ P+ +IL LP+PP + P + G
Sbjct: 208 RRIFAAEEAYAVLRRISEEDLKMM---GFDPERAHPASFILSTLPIPPLAVR-PSVQYGS 263
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE-----------SNDLQLAVGQY 213
+ DL++ ++ V + + R S P QE+ ND+ G
Sbjct: 264 ARSEDDLTLKLVDIVKTNLSLKRQGDS-VPGAVLQEMVMLLQYHVTTLFDNDIP---GMP 319
Query: 214 LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVN 273
+ K + + AR K ++R + K FS+R+VITGD ++
Sbjct: 320 VATTRGKKPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPMLPID 369
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKG- 326
+GVP IA +T+ E V NI L++LV D S + LR KG
Sbjct: 370 TVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGG 429
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L G V R + DGD V NR P+ HK S+ V + T ++N + P +ADF
Sbjct: 430 EVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADF 489
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L QS +AE+ L V KQ++S + + D+LL++ K + FL
Sbjct: 490 DGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLT 549
Query: 446 KAFTQQLAM---FALSPLPRPALSKARCSARWTALQILQSVLPPGFDSC----------- 491
K L + + +P PA+ WT Q+ +L FDS
Sbjct: 550 KPMVYNLLLQIPYWSGVVPPPAI--LHPVPLWTGKQLFSLLL--FFDSSVSGGNTKTRIN 605
Query: 492 ----------------------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 529
+R +I++ E+L G + + S ++ ++ E GP
Sbjct: 606 MQRDVGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGP 665
Query: 530 EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA-------LWNIQKEIQALYSLLYH 582
E +F +LQ L L GF+V +D ++ L +KE+ L L +
Sbjct: 666 ERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHR 725
Query: 583 -RMSTQ-----NELVDLQIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVV 632
R+ +Q E + ++ + + + A+ + +S+ + ++ + S + +
Sbjct: 726 GRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINIS 785
Query: 633 QQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEE 692
Q +G Q + GK E HF + +Y G ++ + GL+P+E
Sbjct: 786 QIMACVG-QQNVEGKRIPFGFNERSLPHFHK-----FDYSPQSRGFVENSYLSGLEPHEL 839
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN-VCSNSIIQFDYA 749
H++ RE I+ ++ SE G + + LM + DV++ YD TVRN +C ++QF Y
Sbjct: 840 FFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSIC--EVLQFLYG 895
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 176/700 (25%), Positives = 308/700 (44%), Gaps = 86/700 (12%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPN---------CLSVP 158
+R L + E+ + K I +E +KL F +D E+L + +S
Sbjct: 10 ERRLLTPSEILNVFKHISKEDCRKLG----FHEDYARPEWLIISVLPVPPPPVRPSISFN 65
Query: 159 DISDGVSTMSSDLSIAMLKKV-LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE-- 215
D G ++ LS M + ++++E+ G+P E E+ LQ V Y++
Sbjct: 66 DTQRGEDDLTYKLSDIMKANINVQKLEM-----DGSPQHVINEFEAL-LQFHVATYMDND 119
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKR 271
+ G ++ + S P + +A L+ ++R + K FS+R+VI+GD
Sbjct: 120 IAGQPQALQK-------SGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE 172
Query: 272 VNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK 325
++++GVP IA+ +T+ E V +NI L ELV N D LR +
Sbjct: 173 LDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKR 232
Query: 326 -GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
G L+ G V R +MD D V NR P+ HK S+ V V T ++N + P +A
Sbjct: 233 AGDIVLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNA 292
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYF 443
DFDGD ++L PQS +AE++ + +V Q++S + + + D L ++ M + F
Sbjct: 293 DFDGDEMNLHVPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSF 352
Query: 444 LDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FD---- 489
++ + Q + + P +P P + K + WT Q+L +P G FD
Sbjct: 353 IE--YDQMMNILYWIPEWDGVIPAPTILKPK--PLWTGKQMLSMTIPKGIHLQRFDEGTT 408
Query: 490 --SCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
S D L+ ++L G D+ T+ + ++ ++ EKGP + F ++Q ++
Sbjct: 409 LLSPNDNGMLVIDGQILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGNIQKVVNFW 468
Query: 547 LFADGFSVSLED--------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD 592
L +GFS+ + D +++K + + E Q H M+ + D
Sbjct: 469 LLHNGFSIGIGDTIADAGTMKEITEAIAIAKEKVEEVTLEAQQNKLTAKHGMTLRESFED 528
Query: 593 LQIE--NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
I N R A+ LK + + ++ + S + + Q + +G Q S GK
Sbjct: 529 NVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRI 587
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ + HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 588 AFGFADRTLPHFSKD-----DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVK 642
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+++ YDGT RN N IIQF Y
Sbjct: 643 TAETGYIQRRLVKALEDIMVHYDGTTRNSMGN-IIQFIYG 681
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 178/691 (25%), Positives = 299/691 (43%), Gaps = 100/691 (14%)
Query: 135 KGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP 194
KG P+ Y+ YLP PP C+ + +T + D L +++ +IR+
Sbjct: 248 KGGRPE-MYLWRYLPAPPVCIRPSVVMTDTNTSNEDDLTVKLTEIVWTSSMIRAGIEKGI 306
Query: 195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR- 253
+ S + + LQLAV Y+ + S+ G S + ++++ R
Sbjct: 307 SINSLMEQWDYLQLAVAMYINSDSASPSA----LSGGTSTKSAKPIRGLCQRLKGKQGRF 362
Query: 254 ------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV---- 303
K FS R+VI+ D R++E+ VP +A+ +T+ ERV +N LQ L+
Sbjct: 363 RGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIINGP 422
Query: 304 -----DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
N L + D + + +K L G +V R I DGD V NR P+ H+ S
Sbjct: 423 DVHPGANYLVKKHEDVKRNLRYGDRNKLAKQLAVGDIVERHIEDGDIVLFNRQPSLHRLS 482
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+
Sbjct: 483 IMSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTP 542
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSA 472
+G + D + S + K F D+A FTQ LAM + L P PA+ K +
Sbjct: 543 KSGEPIIAATQDFITGSYLISNKDSFYDRATFTQMLAMMSDGALHVDIPPPAIFKP--AF 600
Query: 473 RWTALQILQSVL----------------------PPGFD---SCGDRY-LIKKSEVLKGD 506
WT Q+ ++ PPG S D + +I+ S++L G
Sbjct: 601 MWTGKQLFSLLIRPNRQSKVVINLDAKNKTFVPPPPGMPSEMSPNDGFVVIRNSQILSGV 660
Query: 507 FDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
D+ T+ + + +I + G +E + + L L GFS+ + D + +
Sbjct: 661 MDKSTLGDGKKHSVFYTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGINDVTPGE-- 718
Query: 566 LWNIQKEIQALYSLLYH------------RMSTQ-----NELVDLQIENHIRHVKMLVAK 608
N++ + L + Y ++ TQ + ++ +I + V+ V +
Sbjct: 719 --NLKNRKEQLVEIAYRKCDELITLFKTGKLETQPGCNEEQTLEAKIGGLLSKVREEVGE 776
Query: 609 FILKS----------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
+K +T G + + S + VV Q G ++ D F ++L
Sbjct: 777 VCIKELDKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL----- 829
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E G +
Sbjct: 830 PHFLK----NSKSPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYTSR 884
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
LM + D+ YD TVRN SN I+QF+Y
Sbjct: 885 RLMKSMEDLSAGYDETVRN-SSNGIVQFNYG 914
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 166/669 (24%), Positives = 293/669 (43%), Gaps = 78/669 (11%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D ++ +PVPP + DG++ DL+ + V + ++ R G P+ ++
Sbjct: 269 DWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQ 328
Query: 201 VESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
E LQ + +L E G ++ + S P T + L ++R + K
Sbjct: 329 FE-QLLQFHLATFLNNEQPGLPQAQQR-------SGKPLKTLRQRLRGKEGRIRGNLMGK 380
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 314
FS+R+VIT D ++++GVP IA +T ERV N+NY+ +L+ N
Sbjct: 381 RVDFSARTVITADPNIAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANG---PLEHP 437
Query: 315 SSSYSLREG----------SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
+ Y +RE +K L+ G +V R + D D V NR P+ HK S+ + V
Sbjct: 438 GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRV 497
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V D T ++N + P +ADFDGD ++L PQS+ A+A+ EL V K +++ +
Sbjct: 498 KVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPV 557
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL------SKARCSARW 474
+ + D+LL + K+ FL K + L M+ + +P PA+ + + W
Sbjct: 558 MGIVQDSLLGAQKFTKRDIFLTKDWVMNLLMWVSNWDGKVPTPAILVPKKGELGKYTPIW 617
Query: 475 TALQILQSVLP----PGFDSCGD-------------RYLIKKSEVLKGDFDRDTIPSVIN 517
T Q+ +++P GF S + R +I++ E+L G D+ I S
Sbjct: 618 TGKQLFSTIVPGINFTGFSSTHNSKEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAG 677
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-----QKE 572
++ EKGP+E ++Q L+ L F+V + D + L I Q +
Sbjct: 678 GLIHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAK 737
Query: 573 IQALYSLLYH----RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAV 628
+Q ++ L+ ++ TQ ++ + ++ + A+ G L ++ + A
Sbjct: 738 VQ-VHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKAT 796
Query: 629 SKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ F+ + Q + GK H+ + DL P ++ G ++
Sbjct: 797 VTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKD---DLG-PESR-GFVE 851
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V+ YDGTVRN
Sbjct: 852 NSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRN-AQ 910
Query: 741 NSIIQFDYA 749
IIQF Y
Sbjct: 911 GEIIQFLYG 919
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 173/671 (25%), Positives = 296/671 (44%), Gaps = 82/671 (12%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D IL +PVPP + DG++ DL+ + V + ++ R G P+ ++
Sbjct: 238 DWLILTLMPVPPPHVRPSVALDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQ 297
Query: 201 VESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
E LQ + ++ E G ++ + S P T + L ++R + K
Sbjct: 298 FE-QLLQFHLATFINNEQPGLPQAQQR-------SGKPLKTLRQRLRGKEGRIRGNLMGK 349
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 314
FS+R+VIT D ++++GVP IA +T ERV N+ + +L+ N
Sbjct: 350 RVDFSARTVITADPNLEIDQVGVPLSIAMNLTVPERVTPFNMAAMHQLISNG---PLEHP 406
Query: 315 SSSYSLREG----------SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
+ Y +RE +K L+ G +V R + D D V NR P+ HK S+ + V
Sbjct: 407 GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDEDLVLFNRQPSLHKMSIMSHRV 466
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V T ++N + P +ADFDGD ++L PQSL A+AE EL V K +++ +
Sbjct: 467 KVFHWSTFRLNLSVTSPYNADFDGDEMNLHVPQSLTARAEAQELMMVHKVIITPQSNRPV 526
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL------SKARCSARW 474
+ + D+LL ++ K+ F++K L M+ + +P PA+ + W
Sbjct: 527 MGIVQDSLLGVQKFTKRDIFIEKDVVMNLLMWVFNWDGRIPTPAILVPKKGEIGKYRPIW 586
Query: 475 TALQILQSVLP----PGFDSC-------------GDRYLIKKSEVLKGDFDRDTIPSVIN 517
T Q+ V+P GF S R ++++ E+L G D+ TI S
Sbjct: 587 TGKQMFSQVIPDINFTGFSSTHSSKESFAKLSPIDSRVIVQRGELLAGIIDKKTIGSSAG 646
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-----QKE 572
++ + EKGPEE F ++Q L+ L F+V + D + L I Q +
Sbjct: 647 GLIHTTMLEKGPEEAKYFLGAVQKLVNNWLVGRSFTVGVSDAIADVSTLKTIVDIITQAK 706
Query: 573 IQALYSLLYH----RMSTQ---------NELVDLQIENHIRHVKMLVAKFIL-KSSTLGY 618
+Q ++ L+ ++ TQ +LV+ ++ N R A+ L +++ +
Sbjct: 707 VQ-VHDLVQRGQKGKLETQPGRTMVESFEQLVN-KVLNTARDQAGREAQGSLDETNNIKA 764
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
+ S S + + Q +G Q + GK H+ + DL P ++ G
Sbjct: 765 TVTSGSKGSFINISQIIACVG-QQNVEGKRIPYGFQHRTLPHYGKD---DLG-PESR-GF 818
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ +E G + + L+ + V+ YDGTVRN
Sbjct: 819 VENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMARYDGTVRN- 877
Query: 739 CSNSIIQFDYA 749
IIQF Y
Sbjct: 878 AQGEIIQFLYG 888
>gi|255938285|ref|XP_002559913.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584533|emb|CAP92586.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1448
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 179/691 (25%), Positives = 296/691 (42%), Gaps = 85/691 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E++ P+E R ++ ++ +++P PP C+ DG ST DL+ +
Sbjct: 253 ELIGMNPKEARPEM----------FLWQFIPAPPVCIRPSVGQDGAST-EDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 302 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 358
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 359 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKE 416
Query: 298 YLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF---LRPGQVVHRRIMDGDTVFI 348
LQ+ + N L G+ + + S L+ G +V R + DGD V
Sbjct: 417 KLQQRICNGSNKWPGANLIVKKGTGFRQMLKYSNTQRMADQLQEGDLVERHLEDGDIVLF 476
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE +EL
Sbjct: 477 NRQPSLHKLSILSHFAKIRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMEL 536
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPR 462
V+ L + NG + D + + V+ K F D+A Q+ ++ L P LP
Sbjct: 537 MGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFYDRASFTQICLYMLGPETRFDLPP 596
Query: 463 PALSKARCSARWTALQILQSVLPPGFD---------SC----------------GDRYL- 496
P++ K + WT Q+ ++ P D +C D +L
Sbjct: 597 PSILKPQMM--WTGKQVFNILMRPNKDDPVMVNLDAACREFKMPKDGSPKDLDPNDGWLV 654
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SEV+ G D+ TI S + V I GP E + L L GFS+
Sbjct: 655 IRNSEVMCGVMDKSTIGSGKKDNVFYILLRDFGPPAAAEGMNRLSKLSARWFTNIGFSIG 714
Query: 556 LEDFSLSKAALWNIQKEIQALYS-----LLYHRMST--------QNELVDLQIENHIRHV 602
+ D S+ + + ++A YS + ++ T + + ++ QI + V
Sbjct: 715 IGDVYPSEELVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKV 774
Query: 603 KMLVA----KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
+ + + K ++ + S S + V Q +G Q+ G+ +
Sbjct: 775 RQQAGDECIRQLSKYNSPLIMATSGSKGSGINVSQMVALVGQQIIG-GQRVQDGFQDRTL 833
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF P + P +K G ++ FF GL P E + H++S RE +V ++ +E G + +
Sbjct: 834 PHF----PKNARQPPSK-GFVRNSFFSGLQPPEFIFHAMSGREGLVDTAVKTAETGYMSR 888
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
LM L D+ YD TVRN S +I+QF Y
Sbjct: 889 RLMKSLEDLSSMYDDTVRN-SSAAIVQFQYG 918
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/610 (26%), Positives = 274/610 (44%), Gaps = 73/610 (11%)
Query: 191 SGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE--- 245
+G+P QE ES LQ V Y++ + G ++ + S P + +A L+
Sbjct: 95 NGSPQHVIQESESL-LQFHVATYMDNDIAGQPQAVQK-------SGRPIKSIRARLKGKE 146
Query: 246 -KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV
Sbjct: 147 GRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVR 206
Query: 305 NKLCLTYSDGSSSYSLREGS----------KGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N + Y +RE G L+ G V R I D D V NR P+
Sbjct: 207 NG---PNEHPGAKYVIRENGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSL 263
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ A V V T ++N + P +ADF GD ++L PQS +AE+ +L +V Q
Sbjct: 264 HKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFXGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 415 LLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKA 468
++S + + + D L ++ M + F++ Q L M P +P PA+ K
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE--IDQVLNMLYWIPDWXGIIPTPAILKP 381
Query: 469 RCSARWTALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVI 516
+ W+ QIL +P G FD + LI +++ G D+ T+ S
Sbjct: 382 K--PLWSGKQILSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGQIIFGVVDKKTVGSSS 439
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLS 562
++ + EKGPE F ++Q ++ +GFS+ + D +++
Sbjct: 440 GGLIHVVTREKGPEICARLFSNIQKVVNYWFLHNGFSIGIGDTIADEKTMREITEAIAIA 499
Query: 563 KAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKS-STLGYL 619
K + ++ KE QA H M+ + D ++ N R A+ LK + + +
Sbjct: 500 KKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQM 559
Query: 620 IDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
+ + S + + Q + +G Q S GK + + HF + +Y G +
Sbjct: 560 VSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHFSKD-----DYSPESKGFV 613
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H++ RE ++ ++ + G + + L+ L D+++ YDGT RN
Sbjct: 614 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAXTGYIQRRLVKALEDIMVHYDGTTRNSL 673
Query: 740 SNSIIQFDYA 749
N +IQF Y
Sbjct: 674 GN-VIQFIYG 682
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/547 (27%), Positives = 247/547 (45%), Gaps = 46/547 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKN 310
Query: 306 ------KLCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 311 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKES 370
Query: 359 LQALS----------VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L
Sbjct: 371 MMGHKGHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQL 430
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPA 464
V ++S + + D L + M ++ FL K + ++ +P PA
Sbjct: 431 CMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPHPA 490
Query: 465 LSKARCSARWTALQILQSVLP----------PGFDSCGDRYL-IKKSEVLKGDFDRDTIP 513
+ K R WT QI+ V+P GF D L + +++ G F++ ++
Sbjct: 491 IFKPR--PMWTGKQIISLVIPENLSLVRPSSEGFSPLNDDGLGVHGGQLMYGLFNKKSVG 548
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ I+ +F EKGPE ++FF+ Q ++ L +GFS+ + D + + I+ +
Sbjct: 549 ASGGGIIHIVFNEKGPEAAMKFFNGAQTVVNYWLLRNGFSIGIGDTIPDRNTIQQIEDAV 608
Query: 574 QALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKV 631
+ R +T+NEL L N + V+K + K+ + +S ++
Sbjct: 609 NKQKEDVAEITRNATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEESLKDLNNA 668
Query: 632 VQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGC 682
+Q A G G + +S + VE F R P +Y G ++
Sbjct: 669 IQMARSGSKGSTINISQMTAVAGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENS 728
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN +
Sbjct: 729 YLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD- 787
Query: 743 IIQFDYA 749
I+QF Y
Sbjct: 788 IVQFVYG 794
>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
Length = 872
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 165/634 (26%), Positives = 280/634 (44%), Gaps = 79/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVQRCDQEGAPAHVVNEFETL-LQFHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NIN L +L+ N D LR + G L+ G +V
Sbjct: 186 TLTYPEIVTPYNINKLSQLIRNGPNEHPGAKYVIRDTGERIDLRYHKRTGDIPLQYGWIV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I DGD V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIQDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFA 456
QS +AE+ +L V Q++S + + + D+L ++ + K+ D T + M
Sbjct: 306 QSEETRAELSQLCMVSLQIVSPQSNKPVMGIVQDSLCGIRKLTKR---DTFITFEEMMDI 362
Query: 457 LSPLP-------RPALSKARCSARWTALQILQSVLPPGFD------------SCGDRYLI 497
L +P +PA+ R WT Q++ +P G + + L+
Sbjct: 363 LMWVPDWNGIVVQPAI--IRPKPLWTGKQVISMCIPKGINIQRYEEGTGKLSPTDNGMLV 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ +++ +I EKG FF +Q ++ L +GFS+ +
Sbjct: 421 DNGEIIYGVVDKKTVGGKEGDLIHTIMREKGNVVCCNFFTGIQQVVNFWLLHNGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE-----------------NHIR 600
D A + +I + I + ++ T E L E N R
Sbjct: 481 DTIADAATMTDITRTIDEAKEKV-QQIITDAEANKLPAEPGMTVRESFEHKVSQTLNQAR 539
Query: 601 HVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVE 655
V A+ LK S+ + ++ + S + + Q + +G Q+ + + F +TL
Sbjct: 540 DVAGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTL-- 597
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G I+ + GL P E H+++ RE ++ ++ +E G
Sbjct: 598 ---PHFTKD-----DYSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV++ YD TVRN + IIQF Y
Sbjct: 650 IQRRLVKALEDVMVQYDTTVRNSLGD-IIQFIYG 682
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 158/626 (25%), Positives = 277/626 (44%), Gaps = 65/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 271 DLTYKLADILKANINVQKFQMDGSPQHVINEFEAL-LQYHVATYMDNDIAGQPQALQK-- 327
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L ++R + K FS+RSVI+GD ++++GVP +AQ
Sbjct: 328 -----SGRPIKSIRARLRGKEGRLRGNLMGKRVDFSARSVISGDPNIELDQVGVPRTVAQ 382
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 383 TLTYPEVVTPYNIGQLTQLVRNGPNQYPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKV 442
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD V NR P+ HK S+ V T +IN + P +ADFDGD +++ P
Sbjct: 443 ERHLMDGDPVLFNRQPSLHKMSMMCHKXRVMPFSTFRINLSVTTPYNADFDGDEMNMHVP 502
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS KAE+ E+ +V +Q++S + + + D L+ ++ M + F+ A+ Q + M
Sbjct: 503 QSYETKAELEEICAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFV--AYDQLMNMC 560
Query: 456 ALSP-----LPRPALSKARCSARWTALQI----------LQSVLPPGFDSCGDRYLIKKS 500
+P +P+PA+ K R WT Q+ LQ V P LI+
Sbjct: 561 FWNPGWDGVVPQPAVLKPR--PLWTGKQVFSLTIPRGIFLQRVDGPPLSPRDSGMLIRNG 618
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+V+ G ++ T+ + ++ + EKGP E S+Q + L +GFS+ + D
Sbjct: 619 DVMFGVVNKATVGTSSGGLIHTCMREKGPRECARMIGSIQKVCNYWLLHNGFSIGIGDAI 678
Query: 561 LSKAALWNIQKEIQA--------LYSLLYHRMSTQNELVDLQ--------IENHIRHVKM 604
+ I K I + +R+ + + + I N R
Sbjct: 679 ADPDTMKTITKTIATAKDQVQGVIXDAQANRLQPEPGMTVRESFEQKVSKILNEARDAAG 738
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK S+ + ++ + S + + Q + +G Q+ + + Y + HF +
Sbjct: 739 KSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGRRIYFG-FADRSLPHFTK 797
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 798 D-----DYSAESKGFVENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 852
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + +IQF Y
Sbjct: 853 LEDIMVQYDGTTRNSLGD-VIQFLYG 877
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ L +P LG KC++CG +
Sbjct: 17 IQFGLLSPEEIRAISVAKVEYPEIMDPVTMKPRMGGLNDPRLGSIDRNFKCQTCG-EDMK 75
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H + ++K
Sbjct: 76 ECPGHFGHIELAKPVFHIGFMPKIK 100
>gi|406863545|gb|EKD16592.1| DNA-directed RNA polymerase III [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1965
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 176/689 (25%), Positives = 298/689 (43%), Gaps = 98/689 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ P ++ ++ DL+ L ++++ +IR++
Sbjct: 745 GLNPLEGRPEMFIWQFVPAPPICIR-PSVAQENASTEDDLTTK-LGEIVQVSSLIRAALQ 802
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + + LQ A+ Y L+ +G K R R Q
Sbjct: 803 RGQPIQTIVEQWDFLQTAIALYVNSDVPGLQDKGNGKPMRGFCQRLKGKQG--------- 853
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS+R+VI+ D ++++ VP +A +T+ ER +NI L+ LV
Sbjct: 854 -RFRGNLSGKRVDFSARTVISPDPNLGIDQVAVPILVAMNMTYPERAQKNNIEKLRRLVR 912
Query: 305 N---------KLCLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPT 353
N ++ SD S ++ RE H L+ G VV R + DGD + NR P+
Sbjct: 913 NGPSKHPGAQQIIKKGSDHKISLKFARREIEAQH--LKIGDVVERHLEDGDIILFNRQPS 970
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+
Sbjct: 971 LHKLSIMSHYAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKN 1030
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSK 467
L + NG + D + + ++ K+ F D+ L M+ + +P PA+ K
Sbjct: 1031 NLSTPKNGEPIISATQDFITAAYLLSSKENFFDRKTFTNLCMYMVDGNTHLDVPPPAIIK 1090
Query: 468 ARCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEV 502
+ A WT Q+ +++ P S C D +++ SEV
Sbjct: 1091 PQ--ALWTGKQVFSALMRPNKKSPVKVNLDAKCRDYQFVPGQCPDMDINDGWLVVRNSEV 1148
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G D+ T+ S + + I GP+E + + L + L GFS+ + D
Sbjct: 1149 MCGRMDKTTVGSGKKDSIFYIILRDFGPDEAVLAMNRLSKISARYLTNMGFSIGISDVYP 1208
Query: 562 SK-----------AALWNIQKEIQALYSLLYHRMSTQN--ELVDLQIENHIRHVKMLVAK 608
SK A + IQ + + + N E ++ I + V+ +
Sbjct: 1209 SKDLTAAKSRLVLKAYAQSEDLIQQFQNGTLQKSTGCNMEETLENVISGVLSKVRQSAGE 1268
Query: 609 FILKSSTLGY----LIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+ + STL LI +KS S S V Q +G Q+ GK + HF
Sbjct: 1269 YCI--STLSKWNSPLIMAKSGSKGSTINVAQMVAVVGQQIIG-GKRVQDGFQDRTLPHF- 1324
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 1325 ---PKNARQPPSK-GFVRNSFFTGLRPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 1380
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVN 751
L D+ YD TVRN S ++QF + +
Sbjct: 1381 SLEDLSTQYDDTVRN-SSGIVVQFQFGAD 1408
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 4 NTSSTILEGQIV--------GIRFGLATQKEICTASISDCS---ISHASQLANPFLGLPL 52
+T S I++ Q+V ++FG+ + +I ++ + S + ++ P PL
Sbjct: 497 STGSGIVKAQVVDNVPKKFSSLKFGIQSNTQIVNQAVLEVSNTLLYDVEKMRKPMPNGPL 556
Query: 53 E--------FGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKND 104
+ G C +CG C GHFG+I L +P++ HI LKLTM Q K
Sbjct: 557 DPRLGTSSKNGTCGTCGDIL-ANCNGHFGHIRLALPVF---HIGYLKLTMKFLQEICKE- 611
Query: 105 GVAQRLLSSCCEVKEMLKRI 124
R+L + E + L+R+
Sbjct: 612 --CARVLLTDTERRSFLQRL 629
>gi|302914119|ref|XP_003051073.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
77-13-4]
gi|256732011|gb|EEU45360.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
77-13-4]
Length = 1449
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 173/703 (24%), Positives = 298/703 (42%), Gaps = 91/703 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 253 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 311
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G K++R R Q
Sbjct: 312 GSP-VQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKATRGFCQRLKGKQG--------- 361
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV HNI L++ +
Sbjct: 362 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCIK 420
Query: 305 NKL--------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + DG S +L+ ++ +T L+ G VV R + D D V NR P+
Sbjct: 421 NGVDVWPGAQRVVKQDDGGYSINLKFANRDNTSRDLKYGDVVERHLEDNDIVLFNRQPSL 480
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L ++
Sbjct: 481 HKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHN 540
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + NG + D + + ++ K F D+ L M + +P PA+
Sbjct: 541 LATPKNGEPVIAATQDFITAAFLLSSKDRFFDRKTFTYLCMHMMDGKTHLDMPPPAIIAP 600
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ A WT Q+ ++ P DS C D +++ SEV+
Sbjct: 601 Q--ALWTGKQLFSMLMRPNKDSKVKVNLDAKCRAYKARPGQCPDMDPNDGWLVVRNSEVM 658
Query: 504 KGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
G D+ T+ S + I I + GP+E + + L L L GFS+ + D +
Sbjct: 659 CGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARQLTNRGFSIGVGDVFPT 718
Query: 563 KAALWNIQKEIQALYSLLYHRMST-------------QNELVDLQIENHIRHVKMLVAKF 609
++ +K + Y + T Q + ++ + + V+ +
Sbjct: 719 QSLNDEKEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSY 778
Query: 610 ILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+ S LI +KS S S V Q +G Q+ G + + HF +
Sbjct: 779 CVDTLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIG-GSRVADGFQDRTLPHFHK-- 835
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P +K G +K F+ GL P E + H++S RE +V ++ +E G + + LM L
Sbjct: 836 --NARQPPSK-GFVKNSFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLE 892
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
D+ YD TVR I+QF + + + + EPV L
Sbjct: 893 DLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAEPVHFL 934
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN---PFLGLPLE--------FGKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P+ PL+ GKC +C S
Sbjct: 25 GIKFGIQSNQDIANQAVLEVSDRLLYDIENNRAPYRHGPLDSRLGTSSKAGKCATCELSL 84
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
+C GHFG++ LP+P + H+ L+ M Q K+ G R+L E ++ LK +
Sbjct: 85 -SECNGHFGHVRLPLPAF---HVGYLRFIMSILQEICKDCG---RVLLEEPERRQFLKEL 137
>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
Length = 982
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 167/629 (26%), Positives = 278/629 (44%), Gaps = 52/629 (8%)
Query: 162 DGVSTM--SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P E E LQ V Y++ +
Sbjct: 166 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVAEFEQL-LQFHVATYMDNDIA 224
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 225 GQPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 277
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI L +LV N D LR + G
Sbjct: 278 EVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 337
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD HK S+ V V T ++N + P +ADF
Sbjct: 338 EISLQYGWKVERHIVDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 397
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS +AE+ +L V ++S + + D L + K+ + FL
Sbjct: 398 DGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLS 457
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG--FDSCG-------- 492
K + ++ LP+PA+ K R +WT QI+ V+P G + G
Sbjct: 458 KEQVMNILLWVPDWDGILPQPAILKPR--PKWTGKQIISLVIPSGLNLNRAGGEGFSPVN 515
Query: 493 -DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D L+ +++ G ++ ++ + + I+ IF EKGPE ++FF+ Q ++ L +G
Sbjct: 516 DDGLLVSGGKLMYGLLNKKSVGATSSGIIHIIFNEKGPEAAMKFFNGAQTVVNYWLLHNG 575
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKF 609
FS+ + D + + I+ + + R +T+NEL L N + V+K
Sbjct: 576 FSIGIGDTIPDRNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKA 635
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE--- 662
+ K+ + KS ++ Q A G G + +S + VE F
Sbjct: 636 LNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKY 695
Query: 663 RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
R P +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 696 RTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVETAETGYIQRRL 755
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L DV+ YDGTVRN + I+QF Y
Sbjct: 756 VKALEDVMAKYDGTVRNSLGD-IVQFVYG 783
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 174/661 (26%), Positives = 291/661 (44%), Gaps = 78/661 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 276 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 335 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + DGS G L G V
Sbjct: 388 TLTYPETVTPYNIEKLHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +M GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FL K ++
Sbjct: 508 QSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLW 567
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP------GFDSC------GDRYLIKKS 500
+ +P+PA+ K R RWT Q++ V+P G DS + LI+
Sbjct: 568 VPNWDGVIPQPAIYKPR--PRWTGKQLISMVIPKEVTIFNGTDSGESAPLKDEGLLIQAG 625
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + ++ + IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 626 QLMYGLLTKKSVGASAGGIVHISYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTI 685
Query: 561 LSKAALWNIQKEI---QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HV 602
+ +Q I +A + L M+T NEL V EN +
Sbjct: 686 PDAVTIAKVQAHIDDEKAEVARLTA-MATANELEALPGMNVRATFENKVSMALNQARDKA 744
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
K + S+ + S S + + Q +G Q+ + + F +TL
Sbjct: 745 GTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL----- 799
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 800 PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 854
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAY 778
L+ L D+ YDGTVRN + I+QF Y + ++ + +G+L MSN A+
Sbjct: 855 RLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDGLD--AMIIENQKLGIL---NMSNTAF 908
Query: 779 K 779
+
Sbjct: 909 E 909
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L + LG +C++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHIVYPETMDENKTKPRDGGLNDLLLGSIDRSFRCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL P+YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
Length = 1402
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 181/717 (25%), Positives = 307/717 (42%), Gaps = 83/717 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V ++ +RI +E + L + F + + ++ +Y+ VPP + DG S DL++
Sbjct: 218 KVLDLFRRISDEDCELLGLRPKFGRPEEFLWQYISVPPVAIRPSVAQDGASN-EDDLTVK 276
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
+ + V I + G P + E + LQL+V Y+ E+ G R V
Sbjct: 277 LTEIVFTNALIKQGLAKGAPTPQFME-QWEFLQLSVAMYINSELPGVPSQPGQRPIRGFV 335
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
+ K + R K FS R+VI+ D R++E+ VP +A+ +T+ ERV
Sbjct: 336 QR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVT 390
Query: 293 VHNINYLQELVDNKLCLT-----YSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDT 345
VHN+ L++ V N + + G + L+ G++ L G VV R I+DGD
Sbjct: 391 VHNMEGLRKAVLNGPDVHPGANFVARGENKKFLKFGNRKAVAENLAIGDVVERHIIDGDI 450
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ V V + ++N +CGP +ADFDGD ++L PQ+ A+ E
Sbjct: 451 VLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEA 510
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALS----P 459
LEL SV+ L++ NG+ + D + + ++ +K +F +AFTQ A +
Sbjct: 511 LELMSVKHNLVTPRNGDPVIAAIQDFITASYLLSRKDTFFDRRAFTQICCYLADANMQID 570
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS---------CGDRYLIKK----------- 499
+P P + K + WT QI ++ P S C +KK
Sbjct: 571 IPPPTILKPQ--RLWTGKQIFNVLMRPNRKSKVFVNVECKCNKVEEVKKEHYPAIEKPRN 628
Query: 500 -------------SEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLME 545
SE++ G D+ TI S + I I + GP E + + L
Sbjct: 629 DLMANDGWLVIVNSEIMCGLMDKATIGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLCAR 688
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVD 592
L GFS+ + D + I+ Y+ +++ Q + ++
Sbjct: 689 YLANYGFSLGINDVIPGPELTEKKEDLIEKAYAECLDKIALAKKGGLKNKPGCDQEQTLE 748
Query: 593 LQIENHIRHVKMLVAKFILKSSTLG----YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
+I + + +V+ + ++ + + S S +V V Q +G Q+ G
Sbjct: 749 AEISSILSNVREKAGQICMRELSRHNAPLIMATSGSKGSVINVCQMVACVGQQII-AGHR 807
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ HF P P +K G ++ F+ GL E + H+IS RE +V ++
Sbjct: 808 VPDGFQDRSLPHF----PKKSKEPPSK-GFVRNSFYTGLVATEFLFHAISGREGLVDTAV 862
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+E G + + LM L D+ YD TVRN + ++QF Y + L +P+
Sbjct: 863 KTAETGYMQRRLMKALEDLTTQYDLTVRNSAA-GVVQFRYGDDGLDPACLEGDAQPI 918
>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
Length = 860
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 177/696 (25%), Positives = 310/696 (44%), Gaps = 69/696 (9%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPDIS 161
+D A+R + + E+ + K I + +L F + ++L +PVPP + P I+
Sbjct: 4 DDDQAERRVITPSEILNVFKLISPKDCFRLGFNEDFSRPEWLLVTVIPVPPPQVR-PSIA 62
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG 218
+ S D L +LK + + + G+P E E+ LQ V Y+ E+ G
Sbjct: 63 MSETMRSEDDLTYKLGDILKANINVQKLEMDGSPQHVISEFETL-LQFHVATYMDNEIAG 121
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ + S P + +A L+ ++R + K FS+R+VI+GD +++
Sbjct: 122 QPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQ 174
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GH 327
+GVP IA+ ++ E V +NI+ L ELV N D LR + G
Sbjct: 175 VGVPKSIARTLSXPEVVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGD 234
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFD
Sbjct: 235 IDLQYGWRVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFD 294
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDK 446
GD ++L PQS +AE+ +L SV Q++S + + + D L ++ M + F+D
Sbjct: 295 GDEMNLHVPQSEETRAELSQLCSVPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFID- 353
Query: 447 AFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFDSC---GDRYL-- 496
+ Q ++M P +P+PA+ K + W+ Q+ +P G G YL
Sbjct: 354 -YDQVMSMLFWIPQWDGVIPQPAILKPK--PLWSGKQLFSMAIPRGIHLLRLDGATYLSP 410
Query: 497 ------IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
I+ EV+ G D+ T+ S +V ++ EKG + F ++Q ++ L +
Sbjct: 411 NDTGMMIRNGEVMFGVVDKKTVGSAGGGLVHTVMREKGSAICSDLFGNIQKVVNFWLLHN 470
Query: 551 GFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQ---------NELVDLQIE- 596
GFS+ + D + + I I + + ++ S Q E + ++
Sbjct: 471 GFSIGIGDTIADGSTMREITDTITRAKEEVQEIILDAQSNQLEAEPGMTLRETXESKVSR 530
Query: 597 --NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 531 TLNQARDSAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGF 589
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
+ HF + +Y G ++ + GL P E H+++ RE + ++ +
Sbjct: 590 ADRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLXDTAVKTAST 644
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + I+QF Y
Sbjct: 645 GYIQRRLVKALEDIMVHYDGTTRNSLGD-IVQFIYG 679
>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1402
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 186/691 (26%), Positives = 296/691 (42%), Gaps = 86/691 (12%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
++ +YL VPP C+ DG S DL++ + + V I + G+P + E +
Sbjct: 246 FVWQYLSVPPVCIRPSVAQDGASN-EDDLTVKLTEIVFTNALIKKGLLRGSPTPQFME-Q 303
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
+ LQL+V Y+ E+ G R V + K + R K FS
Sbjct: 304 WDFLQLSVAMYVNSELPGVPSQPGQKPIRGFVQR-----LKGKQGRFRGNLSGKRVDFSG 358
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSL 320
R+VI+ D R++E+ VP +A+ +T+ ERV HNI L++ V N G++ S
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGP--DVHPGANYVSR 416
Query: 321 REGSKGHTF---------LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHT 371
E K F L G VV R+I+DGD V NR P+ HK S+ V T
Sbjct: 417 AETKKILRFPNRNSIADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKVRPWRT 476
Query: 372 VKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDA 431
++N +CGP +ADFDGD ++L PQ+ A+AE LEL SV+ L++ NG+ + D
Sbjct: 477 FRLNECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDF 536
Query: 432 LLSLKVMFKK--YFLDKAFTQQLAMFALS----PLPRPALSKARCSARWTALQILQSVLP 485
+ + ++ +K +F + FTQ F + +P P + K + WT Q+ ++
Sbjct: 537 ITASYLLSRKDTFFDRRQFTQICCYFGDANMQIDIPPPTIWKP--ARLWTGKQVFNVLMR 594
Query: 486 PGFDS-------C-------------------------GDRYL-IKKSEVLKGDFDRDTI 512
P S C D +L + SE++ G D+ T+
Sbjct: 595 PNKISEVLVNVECKCNKWEEAKPENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATV 654
Query: 513 PSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-----------S 560
S + I I + GP E + L L L GFS+ + D S
Sbjct: 655 GSGKKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDVIPGPQLKARKES 714
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMS-TQNELVDLQIENHIRHVKMLVAKFILK--SSTL 616
L + A + Q I A L ++ Q + ++ I + + V+ V + +K S
Sbjct: 715 LVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQICMKELSRHN 774
Query: 617 GYLIDSK--SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
LI + S +V V Q +G Q+ G + HF P P +
Sbjct: 775 APLIMATCGSKGSVINVSQMVACVGQQII-AGHRVPNGFQDRSLPHF----PKKSKEPPS 829
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
K G ++ F+ GL E + H+IS RE +V ++ +E G + + LM L D+ YD +
Sbjct: 830 K-GFVRNSFYSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLS 888
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
VRN + ++QF Y + L +P+
Sbjct: 889 VRN-STGGVVQFRYGDDGLDPACLEGDAQPI 918
>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
Length = 1435
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 181/694 (26%), Positives = 291/694 (41%), Gaps = 92/694 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L P+E R ++ ++ +++P PP + P + ++ DL+ +
Sbjct: 253 ELLGLNPKEVRPEM----------FLWQFIPAPPVSIR-PSVGQEGASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R G+ Q
Sbjct: 302 VQSNINLKNAINKGAPVQTIIECWDYMQLQIAVYINSDVPGLQKADFGKPIR-GICQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D R++E+ VP +A +T+ ERV +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L+E + N T ++Y + G+ FL+ G VV R + DGD
Sbjct: 417 KLRERIRNG---TKVWPGANYLSKRGTTFKVFLKYGNLRLMADQLEEGDVVERHLEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ + L P
Sbjct: 534 MELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRKTFLLYCGYMLEPGTKFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP PA+ K + WT Q+ ++ P DS D +
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNVMMRPSKDSPVLLNLDAACREFSAPKGTPRDLDADDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP E + L L L GFS
Sbjct: 652 LCIRNSEIMCGLMDKSTIGSGKKDSVFYVMLRDFGPRVAAEAMNRLSRLSARWLTNMGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENHIR 600
+ + D A L ++ ++ Y+ L S + + ++ QI +
Sbjct: 712 IGITDVYPGDALLQAKREIVEEAYAQCDEVIQLFKTGKLEKAAGSDEQQTMENQISGILN 771
Query: 601 HVKM-----LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V+ +A+ +S L + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGEKCIAELSKWNSPL-IMAQSGSKGSTINVAQMIALVGQQIIG-GQRVQNGFQD 829
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P P AK G ++ FF GL P E H+IS RE ++ ++ +E G
Sbjct: 830 RTLPHF----PKHTRQPLAK-GFVRNSFFSGLTPSELFFHAISGREGLIDTAVKTAETGY 884
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN +N I+QF Y
Sbjct: 885 MSRRLMKSLEDLSCRYDDTVRNSSAN-IVQFQYG 917
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 178/723 (24%), Positives = 305/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A + D +++ S V E+LK I +E L F +
Sbjct: 181 YQPS-IRRSGLDLTAEWKHVNEDSQEKKIALSAERVWEILKHITDEECFILGMDPKFARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + + E+IR+ ++G + S+
Sbjct: 240 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 299
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 353 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 412
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD V NR PT HK S+ V V
Sbjct: 413 IIRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLP 472
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 473 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 532
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K + MF +P+PA+ K + WT Q+ ++
Sbjct: 533 QDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAIMKPK--PLWTGKQVFSLII 590
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 591 PGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 650
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
F E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 651 FLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 710
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ S S
Sbjct: 711 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 770
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 771 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 824
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 825 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQL 883
Query: 747 DYA 749
Y
Sbjct: 884 RYG 886
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 174/661 (26%), Positives = 291/661 (44%), Gaps = 78/661 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 276 DLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 334
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 335 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 387
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L +LV+N + DGS G L G V
Sbjct: 388 TLTYPETVTPYNIEKLHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKV 447
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +M GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 448 ERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 507
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D+L + K+ + FL K ++
Sbjct: 508 QSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLW 567
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP------GFDSC------GDRYLIKKS 500
+ +P+PA+ K R RWT Q++ V+P G DS + LI+
Sbjct: 568 VPNWDGVIPQPAIYKPR--PRWTGKQLISMVIPKEVSIFNGTDSGESAPLKDEGLLIQAG 625
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + ++ + IV + E GPE + F + +Q ++ L +G S+ + D
Sbjct: 626 QLMYGLLTKKSVGASAGGIVHISYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTI 685
Query: 561 LSKAALWNIQKEI---QALYSLLYHRMSTQNEL-------VDLQIENHIR--------HV 602
+ +Q I +A + L M+T NEL V EN +
Sbjct: 686 PDAVTIAKVQAHIDDEKAEVARLTA-MATANELEALPGMNVRATFENKVSMALNQARDKA 744
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
K + S+ + S S + + Q +G Q+ + + F +TL
Sbjct: 745 GTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL----- 799
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 800 PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 854
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAY 778
L+ L D+ YDGTVRN + I+QF Y + ++ + +G+L MSN A+
Sbjct: 855 RLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDGLD--AMIIENQKLGIL---NMSNTAF 908
Query: 779 K 779
+
Sbjct: 909 E 909
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L + LG +C++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHIVYPETMDENKTKPRDGGLNDLLLGSIDRSFRCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL P+YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 178/729 (24%), Positives = 303/729 (41%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P ++ + L + A + D +++ + V E+LK I +E L Y
Sbjct: 181 YQP-NLRRVGLDVTAEWKHVNEDSQEKKINLTAERVWEILKHIIDEECFILGMDPKYARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D I+ LPVPP C+ + G + DL+ + + E++R+ ++GT
Sbjct: 240 DWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADILKANNELVRNEQAGTAAHVLAE 299
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 300 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 346
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V N++ +QELV
Sbjct: 347 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMDKMQELVRRGNSQ 406
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 407 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 466
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 467 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 526
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+P + K + WT Q
Sbjct: 527 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPK--PLWTGKQ 584
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
I ++P + S GD + +++ E++KG + T+ +
Sbjct: 585 IFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIKGILCKKTLGTSAG 644
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ IF E G E +F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 645 SLLHIIFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 704
Query: 578 SLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 705 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 764
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 765 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 818
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YD TVRN
Sbjct: 819 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDSTVRNSVG 878
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 879 -QLIQLRYG 886
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 158/625 (25%), Positives = 276/625 (44%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + ++ R + G P + E E N LQ V Y+ + + KS
Sbjct: 74 DLTYKLADILKANAQVQRCEQEGAPQHVTSEFE-NLLQFHVATYMDNDIAGQPQALHKSG 132
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + A + K ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 133 RPIKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPETVTPYNIQRLSELVRNGPNEHPGARYVIRDSGDRIDLRYHKRAGDIALQFGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I DGD V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHINDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS A+AE+ +L V Q++S + + + D L ++ M + F++ L +
Sbjct: 306 QSEEARAELSQLCLVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDKVMNLCYW 365
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------FDSCGDRYLIKKSE 501
+P+PA+ K + WT Q++ +P G + + LI E
Sbjct: 366 IPEWDGVIPQPAILKPK--PLWTGKQMVSMAIPKGIHLQRVDDKNRLNPKDNSMLIIDGE 423
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G D+ ++ + I+ +I KGP+ +FF ++Q L+ L +GFS+ + D
Sbjct: 424 IIYGVVDKKSVGATSGGIIHTIRQSKGPQVAAKFFGNVQKLVNYWLLHNGFSIGIGDTIA 483
Query: 562 SKAALWNIQKEI-QALYSLLYHRMSTQNELVDL---------------QIENHIRHVKML 605
+ + I I A + + Q + ++L + N R
Sbjct: 484 DASTMREITTTIADAKKKVEEITLKAQRDELELLPGMTLRSTFESLVTSVLNQARDNAGK 543
Query: 606 VAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
++ LK+ + + ++ + S + + Q + +G Q+ + GK + HF +
Sbjct: 544 SSEVNLKNDNNVKQMVVAGSKGSFINISQMSACVGQQIVE-GKRVPFGFADRTLPHFTKD 602
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 603 -----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 657
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
D+++ YDGT RN + IIQF Y
Sbjct: 658 EDIMVHYDGTTRNSLGD-IIQFIYG 681
>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
Length = 2075
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 180/691 (26%), Positives = 293/691 (42%), Gaps = 85/691 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E++ P+E R ++ ++ +++P PP C+ DG ST DL+ +
Sbjct: 880 ELIGMNPKEARPEM----------FLWQFIPAPPVCIRPSVGQDGAST-EDDLTAKLGDI 928
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R V +
Sbjct: 929 VQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQR--- 985
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V +N
Sbjct: 986 --LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKE 1043
Query: 298 YLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF---LRPGQVVHRRIMDGDTVFI 348
LQ+ + N L G+ + + S L+ G +V R + DGD V
Sbjct: 1044 KLQQRICNGSNKWPGANLIVKKGTGFRQMLKYSNTQRMADALQEGDLVERHLEDGDIVLF 1103
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE +EL
Sbjct: 1104 NRQPSLHKLSILSHFAKIRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMEL 1163
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPR 462
V+ L + NG + D + + V+ K F D+A Q+ ++ L P LP
Sbjct: 1164 MGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRASFTQICLYMLGPETRFDLPP 1223
Query: 463 PALSKARCSARWTALQILQSVLPPG--------------------------FDSCGDRYL 496
P++ K + WT Q+ ++ P D +
Sbjct: 1224 PSVLKPQMM--WTGKQVFNILMRPNSSDPVMVNLDAACREFKMPKDGRPKDLDPNDGWLV 1281
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SEV+ G D+ TI S + V I GP E + L L GFS+
Sbjct: 1282 IRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLSARWFTNIGFSIG 1341
Query: 556 LEDFSLSKAALWNIQKEIQALYS-----LLYHRMSTQNELV---DLQ-IENHIRHVKMLV 606
+ D S + + ++A YS + ++ T + +LQ +EN I + V
Sbjct: 1342 IGDVYPSAGLVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKV 1401
Query: 607 --------AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
K + K ++ + S S + V Q +G Q+ G+ +
Sbjct: 1402 RQQAGDECIKQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDGFQDRTL 1460
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF P + P +K G ++ FF GL+P E + H++S RE +V ++ +E G + +
Sbjct: 1461 PHF----PKNARQPPSK-GFVRNSFFSGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSR 1515
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
LM L D+ YD TVRN S +I+QF Y
Sbjct: 1516 RLMKSLEDLSSMYDDTVRN-SSAAIVQFQYG 1545
>gi|119514066|gb|ABL75806.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 989
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 164/635 (25%), Positives = 271/635 (42%), Gaps = 64/635 (10%)
Query: 162 DGVSTMSS--DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VR 217
DG + M DL+ + + + R G+P E E LQ V Y++ +
Sbjct: 167 DGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIA 225
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 226 GQPQALQK-------SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 278
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDN------KLCLTYSDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI L +LV N D LR + G
Sbjct: 279 EVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAG 338
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G V R I+DGD V V T ++N + GP +ADF
Sbjct: 339 EISLQYGWKVERHIVDGDXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTGPYNADF 398
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQS +AEV +L V ++S + + D L + M ++ FL
Sbjct: 399 DGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLT 458
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SC 491
K + ++ +P+PA+ K R WT QIL V+PPG +
Sbjct: 459 KEQVMNILLWVPDWDGVIPQPAIVKPRLM--WTGKQILSLVIPPGLNLMRGSDEGFCPLS 516
Query: 492 GDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D L+ E++ G ++ ++ + ++ IF EKGPE + FF+ Q ++ L +G
Sbjct: 517 DDELLVSGGELMYGLLNKKSVGAAPGGVIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNG 576
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKF 609
FS+ + D + + I+ + + R +T+NEL L N + + V+K
Sbjct: 577 FSIGIGDTIPDRKTIQRIEDAVNKQKDEVGEITRSATENELGSLPGMNVRQTFESKVSKA 636
Query: 610 ILKS---------------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ K+ + + S S + + Q +G Q S GK
Sbjct: 637 LDKARDDAGTVTENSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFK 695
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 696 YRTLPHFTKD-----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 750
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 751 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 784
>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
Length = 878
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 186/737 (25%), Positives = 314/737 (42%), Gaps = 96/737 (13%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L M + D ++ + V E KRI +E L Y
Sbjct: 168 YQP-RIRRQGLGMIGEWKHVDEDSQETTIVLTADRVLENFKRISDEDCAILGMDPKYARP 226
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D IL LPVPP + ++ S D++ ++ V E+ + RSG N E +
Sbjct: 227 DWMILTCLPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGE-NDEIID 285
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNS----TTKAWLE----KMRTLFI 252
+ N LQ +G + + RF S + + K LE ++R +
Sbjct: 286 QKINLLQSHIGTMM---------MNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLM 336
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R++IT D R++++GVP IAQ +TF E V NI +QELV
Sbjct: 337 GKRVDFSARTIITPDPNLRIDQVGVPRIIAQNMTFPEIVTPVNIEKMQELVQR------- 389
Query: 313 DGSSSYSLREGS--------KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
G + Y +RE + K + L G V R I DGD V +NR P+ K + V
Sbjct: 390 -GEAKYLIRENADRIDLKYVKKNPVLEIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRV 448
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V ++++NP P +A+FDGD +++ +PQSL ++EV + +Q+++
Sbjct: 449 KVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQSLETRSEVENILLTPRQIITPQANKPV 508
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L+ + K+ FL K L MF + +P+PA+ K R WT Q+
Sbjct: 509 MGIVQDTLVGTSKLTKRDVFLQKEQMMNLLMFLPTWDGKMPKPAILKPR--PLWTGKQLF 566
Query: 481 QSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
++P + S GD + +I+ E++ G + T+ + +
Sbjct: 567 TLIIPGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASL 626
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ-ALYS 578
+ IF E G E F+ ++Q ++ L +G S+ + D NIQ IQ A
Sbjct: 627 LHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDMLADHQTYLNIQATIQNAKED 686
Query: 579 LLYHRMSTQNELVDLQIENHIRHV----------------KMLVAKFILKSSTLGYLIDS 622
++ +QN+ ++ N +R L + + + L + +
Sbjct: 687 VIEVLQRSQNDELEPTPGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMAVA 746
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
S + Q +G Q + + F +TL HF + D N P ++ G
Sbjct: 747 GSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTL-----PHFIK----DDNGPESR-GF 796
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H+++ RE+++ +R SE G + + L+ + V++ YDGTVRN
Sbjct: 797 VENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETG-IIRQLVKGMESVMVHYDGTVRN- 854
Query: 739 CSNSIIQFDYAVNARKS 755
+ ++ Y N +KS
Sbjct: 855 SAGRLLLLRYKHNNKKS 871
>gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 1517
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 184/666 (27%), Positives = 278/666 (41%), Gaps = 133/666 (19%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEG--- 70
I G+ FG+ T+ E T +S +I S++ +P LGLP +C +CG+ + CEG
Sbjct: 16 ITGMAFGVLTEAE--TEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKSCEGIVD 73
Query: 71 --------------------------HFGYIELPIPIYHPSHISEL-----------KLT 93
HFG I P I HP +SE+ K
Sbjct: 74 VDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSI 133
Query: 94 MYAFQLQIKNDGVAQRLLSSCC----------------------------EVKEMLKRIP 125
A ++ QR C E++E L + P
Sbjct: 134 RLAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSKKP 193
Query: 126 EETRKKLAGKGY---FPQDGYILEYLP-VPPNCLSVPDISDGVSTMSSDLSIAMLK-KVL 180
++ KK+ Y FP+D E PN + V M D+ +K +L
Sbjct: 194 QKGFKKILAADYWDIFPKDEQEEEEETNAKPNRRVLS--HSQVRHMLKDVDPNFIKLSIL 251
Query: 181 KQVEIIRSSRSGTPN----FESQEVESNDLQL-------AVGQYLEVRGTAKS----SRD 225
K I + TPN E SN +L A + ++ RG A + D
Sbjct: 252 KTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFRGVANTLSFHVMD 311
Query: 226 VDARFGVSQDPNSTTKAW----------------LEKMRTLFIRKGSGFSSRSVITGDAY 269
++ D + W L ++ + + K + S R VI GD +
Sbjct: 312 CLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRNDHSFRMVIVGDPH 371
Query: 270 KRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS----K 325
+++EIG+P IA+R+ E + N L + + + + REG+ +
Sbjct: 372 LQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEK----SRFEKGDMHVRREGNLVRVR 427
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTV-KINPLICGPLSA 384
LR G +++R + DGDTV INRPP+ H+HSL ALSV V +V INPL C P A
Sbjct: 428 HMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRA 487
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK-KYF 443
DFDGDC+H + PQS+ + E+ EL S++KQL + +G L L+ D+L + ++ + F
Sbjct: 488 DFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVF 547
Query: 444 LDKAFTQQLAMFALSPLPRPALSKARCSAR-WTALQILQSVLPPGFD----SCGDRYLIK 498
L QQL MF PA+ +A WT Q++ +LP GFD SC I+
Sbjct: 548 LSSFELQQLQMFRPERFLLPAVKAPSANALVWTGKQLISMLLPVGFDHDFPSCN--VCIR 605
Query: 499 KSEVL--KGDF-DRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+++ +G F DT ++ +V +VL+F + Q +L E L G SVS
Sbjct: 606 DGDLVSSEGSFWLWDTDGNLFQSLVKHCH-----GQVLDFLYAAQRVLCEWLSMRGLSVS 660
Query: 556 LEDFSL 561
L D L
Sbjct: 661 LSDLYL 666
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 189/406 (46%), Gaps = 67/406 (16%)
Query: 599 IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ-------------LSDR 645
R ++ LV K+ + ++ + + S + K+VQ + LGLQ LS
Sbjct: 762 FRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCA 821
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G ++K +D +R P + +++G F GL+P E HS+++R+
Sbjct: 822 G--WNKQKADDATESAKRYIP---------HAVVEGSFLSGLNPIECFVHSVTSRDSSFS 870
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARK--------SHS 757
+ L PGTLF+ +M +RD+ YDGTVRN N ++QF Y ++ ++S
Sbjct: 871 DNADL--PGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNS 928
Query: 758 LFPAGEPVGVLAATAMSNPAYKA------VLDSSPSSNNSWELMKEILLCRVSFNNDPID 811
AG PVG LAA A+S AY A +L+ SP N +K +L C + N+
Sbjct: 929 DGIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLN-----LKNVLECGLKRNS--AH 981
Query: 812 RRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDE----G 867
+ + L+L++ +++ E AA V+N L+R+ D V F+ P+ SD
Sbjct: 982 QTMSLFLSEKLGRQRHGFEYAALEVQNHLERLLFSD-IVSFVRIIFSPQ--SDGRMHFSP 1038
Query: 868 LVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQ 927
V H H+ K +++ + +H I+ + L+ CK K VQ S C+
Sbjct: 1039 WVCHFHVYKEIVKKRSLKVHYII----DALEKQCKSKTRFPKVQI-------TSRYCTVA 1087
Query: 928 QSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETIIK 973
+ +K+ + ++ + + +++ + + +++ P LLET+IK
Sbjct: 1088 DTWKEKKETFCITVTIVETSKNEFIELET--IQDLMIPFLLETVIK 1131
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 963 IYPVLLETIIKENW-WVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
I+ L I W + L ++++ V K VL EHL+L+AN ++ G+ VG N+ G K
Sbjct: 1200 IHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKR 1259
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
+V PF +A P CF +AA+ D+L + A +WGK A+GTG +FD+++
Sbjct: 1260 QREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIGTG-QFDIVY 1318
Query: 1082 QTENEEFNQDDGVDVYDFL 1100
+ EF++ VDVY+ L
Sbjct: 1319 SGKGLEFSKP--VDVYNLL 1335
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 176/723 (24%), Positives = 309/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
Y P I L +YA + D +++L S V E+ KRI +E L F +
Sbjct: 185 YQP-RIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDSKFARP 243
Query: 142 GY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
+ I+ LPVPP + + G + DL+ + V ++ R+ +SG + ++
Sbjct: 244 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAE 303
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
+V+ +A E+ G ++ + S P + K L+ ++R + K
Sbjct: 304 DVKLLQFHVATMVDNELPGLPRAMQK-------SGRPLKSIKQRLKGKEGRVRGNLMGKR 356
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV
Sbjct: 357 VDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKY 416
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD V NR PT HK S+ V +
Sbjct: 417 IIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 476
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ + + +
Sbjct: 477 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 536
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVL 484
D L +++ K+ FLD+ L MF + +P+PA+ K R A WT QI ++
Sbjct: 537 QDTLTAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILKPR--ALWTGKQIFSLII 594
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + ++ + +V
Sbjct: 595 PGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHIS 654
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
+ E G + F+ ++Q ++ L +G S+ + D +IQ I+ +
Sbjct: 655 YLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEV 714
Query: 584 M--STQNEL-------VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
+ + NEL + EN + + K + + + ++ + S
Sbjct: 715 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 774
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK HF + +Y G ++ + G
Sbjct: 775 SKINISQVIAVVG-QQNVEGKRIPFGFKHRTLPHF-----IKDDYGPESRGFVENSYLAG 828
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN N ++Q
Sbjct: 829 LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI-NQVVQL 887
Query: 747 DYA 749
Y
Sbjct: 888 RYG 890
Score = 43.9 bits (102), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGIISPDELKRMSVTEGGIRYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H ++++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFVTKI 101
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 178/723 (24%), Positives = 304/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ S V E+ K I +E L F +
Sbjct: 181 YQP-NIRRTGLDLTAEWKHVNEDSQEKKISLSAERVWEIFKHITDEECYILGMDPKFARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + + E+IR+ ++G + S+
Sbjct: 240 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAAAHVISE 299
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCL 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 353 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 412
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD V NR PT HK S+ V V
Sbjct: 413 IVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLP 472
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++ + +
Sbjct: 473 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIV 532
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K L MF +P+PA+ K + WT Q+ ++
Sbjct: 533 QDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPK--PLWTGKQVFSLII 590
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 591 PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 650
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
F E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 651 FLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 710
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ S S
Sbjct: 711 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 770
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 771 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 824
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 825 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQL 883
Query: 747 DYA 749
Y
Sbjct: 884 RYG 886
>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
Length = 863
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/629 (24%), Positives = 279/629 (44%), Gaps = 71/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 72 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 130
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 131 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 180
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 181 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYG 240
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 241 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 300
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 301 HVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE--YDQVM 358
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD--------SC--GDRYLI 497
M P +P PA+ K + WT Q+L +P G SC + LI
Sbjct: 359 NMLYWIPTWDGVIPPPAVMKPK--PLWTGKQLLSMAIPKGIHLQRLESNLSCPNDNGMLI 416
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ + F ++Q ++ L +GFS+ +
Sbjct: 417 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSNIQKVVNYWLLHNGFSIGIG 476
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHIRH 601
D + + I+ + + + + +N+L ++ N R
Sbjct: 477 DTIADSDTMKTVTTTIEEAKAKVQEIILNAQRNKLEPEPGMTLRESFEHNVSRVLNQARD 536
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ S S + + Q + +G Q+ + GK + H
Sbjct: 537 TAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRTLPH 595
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 596 FTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 650
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN + IIQF Y
Sbjct: 651 VKALEDIMVHYDGTTRNSLGD-IIQFVYG 678
>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 181/716 (25%), Positives = 300/716 (41%), Gaps = 106/716 (14%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI 160
I+ G+ QR+ S+ CE+ ++ R PE +L +LPVPP C+
Sbjct: 237 IRVLGILQRVTSADCELLDIADR-PEH---------------LLLTHLPVPPCCIRPSVE 280
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQY------- 213
DGVS + D L ++++ ++R + + LQ+ Y
Sbjct: 281 MDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLAVNNMMENWDFLQIQCAMYINSELPG 340
Query: 214 --LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKR 271
L+ +G K R R K + R K FS+R+VI+ D R
Sbjct: 341 LSLQYQGPGKPLRGFVQRL----------KGKQGRFRGNLSGKRVDFSARTVISPDPNLR 390
Query: 272 VNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGS 324
++E+GVP IA+ +T+ E VN HN+ L+E V N + + ++ G Y L+ G
Sbjct: 391 IDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPGANFVKFASGGMQY-LKYGD 449
Query: 325 --KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
K + L+ G +V R + DGD + NR P+ HK S+ A + + T++ N +C P
Sbjct: 450 RRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARIMECRTLRFNECVCTPY 509
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKK 441
+ADFDGD +++ PQ+ A+AE ++L V+ L + NG + + D L + ++ K
Sbjct: 510 NADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKNGEILIAATQDFLTAAFLLTIKD 569
Query: 442 YFLDKAFTQQLAMFA----LS-PLPRPALSKARCSARWTALQILQSVLPPGFDS------ 490
F D++ L + LS LP PA+ K WT Q+ ++ P
Sbjct: 570 AFFDRSQFGSLVAYMGDALLSVDLPTPAILKP--IELWTGKQVFSVLIRPKASDHIYVNL 627
Query: 491 --------------C-GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIF-FEKGPEEVL 533
C D Y+ I+ SE++ G + T+ S + + E G E
Sbjct: 628 EVAEKLYNKKDKTMCPDDGYVCIQNSEIISGQLGKATLGSGNKSGLFYVLNIEYGAEAAA 687
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST------- 586
+ L L L GFS+ ++D S + + I+ Y R+++
Sbjct: 688 NAMNRLAKLSARWLGTRGFSIGIDDVSPAAELSAEKGRRIEDGYRTCDERIASYEKGTLP 747
Query: 587 ------QNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSDSA-VSKVVQ 633
E ++ ++ + V+ LK + + L SK + +S+++
Sbjct: 748 LQAGCNAEETLEAEVLGVLSAVREAAGNACLKALPRRNAPLIMALCGSKGSTINISQMIA 807
Query: 634 QAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEM 693
G Q + G E HF R P AK G + FF G+ P E
Sbjct: 808 CVG----QQAVGGSRPPDGFAERSLPHFRR----GEKTPAAK-GFVANSFFSGMRPTEFF 858
Query: 694 THSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE +V ++ +E G + + LM L D+ + YDGTVRN I+Q Y
Sbjct: 859 FHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLQYDGTVRN-SMGGIVQLRYG 913
>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
Length = 870
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 158/626 (25%), Positives = 283/626 (45%), Gaps = 65/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANINVQRCEMDGSPQHVVSEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 VLTYPEIVTPYNIQKLTELVLNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q + M
Sbjct: 306 QSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE--YDQVMNMC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P+PA+ K + W+ Q+L +P G LI
Sbjct: 364 FWIPNWDGVVPQPAILKPK--PLWSGKQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNG 421
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ T+ + ++ ++ EKGP+ + F ++Q ++ L +GFS+ + D
Sbjct: 422 EIMFGVVNKATVGASAGGLIHTVMREKGPQVCAQLFGNIQKVVNYWLLHNGFSIGIGDAI 481
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRHVKM 604
A + I + I A + M QN L++ + + N R
Sbjct: 482 ADSATMKTITETIAIAKEKVQEVIMDAQNNLLEAEPGMTVRESFEQKVSKLLNEARDSAG 541
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK S+ + ++ + S + + Q + +G Q+ + GK + + HF +
Sbjct: 542 KSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPHFTK 600
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 D-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 655
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + IIQF Y
Sbjct: 656 LEDIMVHYDGTTRNSLGD-IIQFVYG 680
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 158/629 (25%), Positives = 278/629 (44%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADIIKANINVQRLEIDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP---LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + + W+ QIL +P G FD D LI
Sbjct: 548 NMCYWIPNWDGVIPPPAIIKPKPLWSGKQILSMAIPKGIHIQRFDGGRDLLSAKDTGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+ +
Sbjct: 608 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFWLLHNGFSIGIG 667
Query: 558 DFSLSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRH 601
D + + +I K IQ A + + Q+ +D + + N R
Sbjct: 668 DTIADASTMKDITKTIQEAKQKVQEIILDAQHNKLDPEPGMTLRESFEHNVSRVLNQARD 727
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ S S + + Q + +G Q+ + GK + H
Sbjct: 728 TAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSLPH 786
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 787 FTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 841
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN + IIQF Y
Sbjct: 842 VKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ ++ A++ L +P LG KC++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLGSIDRNFKCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
Length = 1011
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/537 (27%), Positives = 245/537 (45%), Gaps = 36/537 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-- 303
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV
Sbjct: 265 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKT 324
Query: 304 --DNKLCLTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
++ Y D LR + G L+ G V R I+DG +K S
Sbjct: 325 GPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGXXXXXXXXXXXYKES 384
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 385 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 444
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K R +W
Sbjct: 445 QRNGPLMGIVQDTLCGIYKICRRDVFLSKELVMNILLWVPDWDGVIPQPAILKPR--PKW 502
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ ++PPG + S G D + E++ G F++ ++ + N +V I
Sbjct: 503 TGKQIISLIIPPGLNLFRSSSEGPSPLNDDGLQVSGGELMYGLFNKKSVGATSNGVVHII 562
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGP+ + FF+ Q ++ L +GFS+ + D + + I+ + + +
Sbjct: 563 FNEKGPDAAMSFFNGCQTVVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEI 622
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG 639
R +T+NEL L N + V K + K+ + KS + Q A G G
Sbjct: 623 TRSATENELEPLPGMNVRETFESKVQKALNKARDDAGTVTEKSLKDTNNATQMARSGSKG 682
Query: 640 --LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P +Y G ++ + GL P E
Sbjct: 683 STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 742
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 743 FFHAMARREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 798
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 169/660 (25%), Positives = 286/660 (43%), Gaps = 77/660 (11%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
D DG T DL+ + + + R GTP +E E+ LQ V Y+
Sbjct: 191 DSGDG-PTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETL-LQFHVATYMSNDT 248
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ + KS R V A + K ++R + K FS+R+VITGD +
Sbjct: 249 AGQPQALQKSGRPVKAI-------RARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSL 301
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK- 325
+E+GVP IA+ +T+ E V +NI L +L+ N D LR +
Sbjct: 302 DEVGVPRSIARTLTYPETVTPYNIQKLHQLIKNGPNEHPGARYVIRDNGERIDLRYHRRA 361
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
G L+ G V R I+DGD + NR P+ HK S+ V V T ++N + P +AD
Sbjct: 362 GDLVLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNAD 421
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQS +AEV +L V ++S + + + D L + K+ + FL
Sbjct: 422 FDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFL 481
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR------- 494
++ + ++ +P+PA+ K + WT QI+ ++P G + D+
Sbjct: 482 NQGQVMNILLWVPDWDGIIPQPAILKP--TPVWTGKQIVSLIIPAGLNLVRDKNHNPLDD 539
Query: 495 --YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
LI E++ G + + + + ++ ++ EKGPE + FF+ Q ++ L +GF
Sbjct: 540 KGALISGGELMYGLLTKRIVGAQMAGVIHIVYNEKGPEAAMNFFNGAQAVVNYWLLHNGF 599
Query: 553 SVSLED-------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--------- 596
S+ + D L + A+ + E+ + + ST L + I
Sbjct: 600 SIGIGDTIPDRETIRLIEEAVTKKKDEVAVITKEATN--STLETLPGMNIRETFESKVSK 657
Query: 597 --NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----F 648
N R V + LK + + S S + + Q +G Q S GK F
Sbjct: 658 ALNSARDNAGTVTEDSLKDLNNATQMARSGSKGSSINISQMTAVVG-QQSVEGKRIPFGF 716
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+TL HF + +Y G ++ + GL P H+++ RE ++ ++
Sbjct: 717 KYRTL-----PHFTKD-----DYSPESRGFVENSYLRGLTPTGFFFHAMAGREGLIDTAV 766
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
+E G + + L+ L DV+ YDGT+RN + I+QF Y + + P +P+ ++
Sbjct: 767 KTAETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLDGAHIEP--QPIDII 823
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 171/671 (25%), Positives = 291/671 (43%), Gaps = 92/671 (13%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YIL+ LPVPP+ + P ++ ST S D +K +EI+R ++ N + QE+
Sbjct: 225 YILQVLPVPPHPVR-PSVAFDASTRSED------DLTVKLMEIVRMNK----NLQKQEMN 273
Query: 203 SNDLQLAVGQYLEV-----------------RGTAKSSRDVDARFGVSQDPNSTTKAWLE 245
Q +G++ E+ R +S R + + +S+ K
Sbjct: 274 GAP-QHVIGEFTELLQYHIMTFMDNTVAGQPRSLTRSGRPIKS---ISE----RLKGKNG 325
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI L++LV+N
Sbjct: 326 RIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPEMVTPYNIERLRKLVEN 385
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ + Y +RE + L G V R +++GD V NR P+ H
Sbjct: 386 GPHPPPGETGAKYIIREDGQRLDLRFLKKESDKRLEYGYRVERHMINGDCVLFNRQPSLH 445
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ V + T ++N + P +ADFDGD +++ PQSL +AEV EL V K +
Sbjct: 446 KMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSLETRAEVQELMMVPKMI 505
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCS 471
+S + + D LL+ ++M K+ F+ K + M+ + +P+PA+ K
Sbjct: 506 VSPQANKPVMAIVQDTLLASRLMTKRDTFIKKDVFMNILMWLENWDGKVPKPAILKPE-- 563
Query: 472 ARWTALQILQSVLP---------------PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSV 515
WT Q+ LP P S D + I+K E++ G + T+ S
Sbjct: 564 PLWTGKQVFTMFLPDVSLTKQSAWAKDNDPHDFSVEDTGVRIEKGELITGILCKKTLGSG 623
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
++ I+ E GP F +Q LL L GF++ + D + +I I
Sbjct: 624 GGGLIHVIWEEWGPTAARGFVSQVQWLLNYWLLQHGFTIGISDTIADDGTMNSINDTITK 683
Query: 576 LYSLLYHRMS-TQNELVDLQ--------IENHIRHVKMLVAKFILKSSTLGYLIDSKSDS 626
+ ++ Q ++LQ E + + + A+ +S G L D+ +
Sbjct: 684 AKQDVKEVIALAQTNALELQPGMTMQQSFEQKVNQI-LNKARDNAGNSAQGSLDDTNNVK 742
Query: 627 AVSKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
+ FL + Q + GK HF + +Y G
Sbjct: 743 MTVTAGSKGSFLNISQMIACVGQQNVEGKRIPFGFDGRSLPHFTKD-----DYGPESRGF 797
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN
Sbjct: 798 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRN- 856
Query: 739 CSNSIIQFDYA 749
+ +IQF Y
Sbjct: 857 SAGDVIQFLYG 867
>gi|440795837|gb|ELR16951.1| DNAdirected RNA polymerase subunit A [Acanthamoeba castellanii str.
Neff]
Length = 1230
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 198/776 (25%), Positives = 323/776 (41%), Gaps = 91/776 (11%)
Query: 45 NPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKND 104
+P +G+ G C +CG + +C GHFGYI+L +P H + +L+ + F +K D
Sbjct: 70 DPRMGVCNTKGICSTCG-QKVQECAGHFGYIKLALPDPH-AAADDLQF-LGEFDEAVKLD 126
Query: 105 GVAQRLLSSC------CEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSV 157
L+ + + RIP E + + G + +L++L VPP +
Sbjct: 127 ESLAPHLNKAQDDLNPIRIMNIFSRIPPEDLELMDMNGKIANPTHLVLQHLLVPPITIR- 185
Query: 158 PDISDGVSTMSSDLSIAM-LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
P ++ S S++ + M L K+L + + N + + L + V Y+
Sbjct: 186 PSVAMDASQGSNEDDLTMGLGKILNINNALEAELEKGNNMPQIMEKWDALHINVALYINS 245
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
E G + G+ Q K + R K FS R+VI+ D R++E
Sbjct: 246 ETPGIPPTIVPAKPTRGLCQ----RLKGKKGRFRGNLSGKRVDFSGRTVISPDPNLRIDE 301
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKL--------CLTYSDGSSSYSLREGSKG 326
+ +P +A+ +T+ ERVN NI+ +++LV N + G S + S+
Sbjct: 302 VALPELLAKVMTYPERVNAKNIDKMRKLVLNGTDKWPGANGIIPRDGGKLSLKFGDRSRA 361
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
LR G +V R ++ GD V NR P+ H+ S+ V V T + N +CGP +ADF
Sbjct: 362 ANNLRIGDIVERHLLHGDVVLFNRQPSLHRISIMCHRVRVMPWRTFRFNECVCGPYNADF 421
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLD 445
DGD +++ PQ+ A+AE + L +V + L++ NG + D L S V K F D
Sbjct: 422 DGDEMNVHVPQTEEARAEAMTLMAVNQNLITPRNGEPLVAATQDFLTASYLVTRKDAFFD 481
Query: 446 KAFTQQLAMF-----ALSPLPRPALSKARCSARWTALQILQSVLPP--GFDSC------- 491
+A +L F A +P PA+ K WT Q+ +L P D C
Sbjct: 482 RAEFCRLCSFFVDADAKIDIPPPAIVKP--MELWTGKQLFYILLRPNKNVDVCLSMEVKG 539
Query: 492 ----------------GDRYLI-KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
D Y++ +SE+L G D+ T+ E + + V
Sbjct: 540 REYTGKGSYEPLYMCRKDGYVVFHQSELLCGIMDKKTLGGGSKENIFHVLMRDYSTIVAA 599
Query: 535 FFDSLQPLLMENLFAD-GFSVSLEDFSLSKAALWNIQKEIQALY----SLLYHRMSTQ-- 587
S AD GFS+ + D S + IQ Y +L+ S +
Sbjct: 600 DRMSRLAKFCARWLADWGFSIGISDVMPSDKLKREKDELIQTAYAECRTLISEYKSGKLQ 659
Query: 588 -------NELVDLQIENHIRHVKMLVAKFI------LKSSTLGYLIDSK-SDSAVSKVVQ 633
+ ++ Q+ + V+ L + + L SK S+ +S+++
Sbjct: 660 PQPGCNVEQTLEAQLNKILSDVREACGTACINELHPLNAPLIMALCGSKGSNINISQMIA 719
Query: 634 QAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEM 693
G Q + G + + HF ++ P AK G +K FF GL E
Sbjct: 720 CVG----QQTVSGSRVPEGFIHRTLPHFG----VNARDPEAK-GFVKNSFFTGLTGTEFF 770
Query: 694 THSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE +V ++ +E G + + LM L D+ + YD TVRN CS I+QF Y
Sbjct: 771 FHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLAVQYDDTVRN-CSGGIVQFVYG 825
>gi|126178251|ref|YP_001046216.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|126178264|ref|YP_001046229.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|125861045|gb|ABN56234.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
gi|125861058|gb|ABN56247.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 882
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 178/738 (24%), Positives = 304/738 (41%), Gaps = 85/738 (11%)
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
H G +L I P+ SE+ + DG + +++ L+RIP++ +
Sbjct: 141 HCGEQQLKINFEKPTTFSEVFV----------EDGRKVEHKLTPADIRARLERIPDDDLR 190
Query: 131 KLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSS 189
L + + IL LPVPP + I + DL+ ++ + +
Sbjct: 191 ALGVNPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQ 250
Query: 190 RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM 247
+G P +++ LQ V YL EV G + S P T L+
Sbjct: 251 DAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR-------SGRPLKTLSQRLKGK 302
Query: 248 RTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
F SG FS+R+VI+ D + E+G+P IA +T RV NI +++ V
Sbjct: 303 EGRFRGSLSGKRVNFSARTVISPDPNLSIGEVGIPLAIANEMTLPIRVTTFNIEEMRQYV 362
Query: 304 DN--KLCLTYSDGSSSYSLREGSKGHTF-----------LRPGQVVHRRIMDGDTVFINR 350
N + S ++Y++R ++ + PG V R++ D D V NR
Sbjct: 363 LNGPERPTIRSPCGANYAIRPDNRRMRLSDANLETVAEMIEPGWTVERQLKDNDIVLFNR 422
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ H+ S+ A V V D T ++NP +C P +ADFDGD ++L PQ+ A+AE L S
Sbjct: 423 QPSLHRMSIMAHRVVVMDGKTFRLNPAVCPPYNADFDGDEMNLHIPQTEEARAEAEILVS 482
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPLPRPALSKA 468
V +LS G + D + + ++ ++F + + LP P
Sbjct: 483 VSSNILSPRTGGPIIGGIHDHISGIFLLTHTVRHFSKEEVLYLTQHLPVEHLPEPDRMDE 542
Query: 469 RCSARWTALQILQSVLPPGFD------SC------------GDRYL-IKKSEVLKGDFDR 509
+ WT Q+ VLP + SC D ++ + ++ G D+
Sbjct: 543 NGNPLWTNKQVFSLVLPDNLNMVFQASSCQNCETCKREMCENDAFVRVVNGNLITGTIDK 602
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
I + +I+ I + G + F D + L + + +GFS ++D L++ I
Sbjct: 603 KGIGAFDGQILHRIIRQHGMKRAARFIDDVTKLSIRGIMLEGFSFGIDDEDLTRTEYGQI 662
Query: 570 QKEIQALYSLLYHRMSTQN-------------ELVDLQIENHIRHVK----MLVAKFILK 612
+ + S + R+ N E +++QI + + + + +
Sbjct: 663 DEVLDGAISDVDRRIKIYNEGQLEPMPGRTLEETLEMQIMQVLGKARDRTGEIAGRHLGM 722
Query: 613 SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYP 672
++ + S + ++ + Q AG LG Q S RG+ + + HF R N
Sbjct: 723 DNSAVVMAVSGARGSMLNLTQMAGCLG-QQSVRGERIMRGYEDRTLPHFRR------NER 775
Query: 673 TAK-YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
A+ +G I + GL P E H+I RE +V ++ S+ G L + ++ L+D+ + Y
Sbjct: 776 GAEAHGFITNSYKSGLSPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQDLKVAY 835
Query: 732 DGTVRNVCSNSIIQFDYA 749
DGTVR IIQF Y
Sbjct: 836 DGTVRTT-GGRIIQFRYG 852
>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1444
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 293/694 (42%), Gaps = 92/694 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP + P + ++ DL+ +
Sbjct: 253 ELLGLNPEEVRPEM----------FLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R G+ Q
Sbjct: 302 VQSNINLKNAINKGAPVQTIIECWDYMQLQIAVYINSDVPGLQKADFGKPIR-GICQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D R++E+ VP +A +T+ ERV +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L+E V N T ++Y + G+ FL+ G VV R + DGD
Sbjct: 417 KLRERVRNG---TKIWPGANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ + L P
Sbjct: 534 MELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------GDRY 495
LP PA+ K + WT Q+ ++ P +S C D +
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNVLMRPSKESPVLVNLDAACREFRAPKGTPRDLDPNDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENHIR 600
+ + D + L ++ ++ Y+ L + + ++ QI +
Sbjct: 712 IGITDVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILS 771
Query: 601 HVK-----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V+ +A+ +S L + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGEQCIAELSKWNSPL-IMATSGSKGSTINVAQMIALVGQQII-AGQRVQDGFQD 829
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P P AK G ++ FF GL P E H+IS RE ++ ++ +E G
Sbjct: 830 RTLPHF----PKYARQPPAK-GFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGY 884
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 885 MSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 179/699 (25%), Positives = 300/699 (42%), Gaps = 80/699 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V +LKRI +E L F + D IL+ LP+PP + + D + DL+
Sbjct: 219 KVLSILKRISDEDCAILGLNPKFARPDWMILQALPIPPPPVRPSVMMDSSARSEDDLTHQ 278
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSSRDVD- 227
+ + + + ++G P E + LQ + Y + R T +S R +
Sbjct: 279 LAMIIRHNNNLKKQEQNGAPTHIINEF-AQLLQFHIATYFDNDLPGQPRATQRSGRPIKS 337
Query: 228 --ARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
AR KA ++R + K FS+R+VIT D ++E+GVP+ IA +
Sbjct: 338 ICARL----------KAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNL 387
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V +N+ L+ELV+ + Y +RE + L G
Sbjct: 388 TYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKRSSDRHLELGYK 447
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 448 VERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 507
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AEVLEL V K ++S + + + D LL KV + F++K + M
Sbjct: 508 PQSFETRAEVLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILM 567
Query: 455 ----FALSPLPRPALSKARCSARWTALQILQSVLPPGFD----------------SCGDR 494
FA +P P + K R WT QI ++P + S GD
Sbjct: 568 WWEEFA-GKIPIPTILKPR--PLWTGKQIFTLIIPKQINLMRQAFWHPDSEVGDLSPGDT 624
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+ I+K EV+ G + T+ + ++ I+ E GP+ +F Q L+ L GFS
Sbjct: 625 QVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFS 684
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-TQNELVDLQ--------IENHIRHV-- 602
+ + D A + I + I + + + Q++ ++ Q EN + V
Sbjct: 685 IGIGDTIADAATMEKINETISIAKNDVKDLIKMAQDKQLEAQPGRTMKESFENRVNGVLN 744
Query: 603 ------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
+ + +S+ L ++ + S + Q +G Q + GK V+
Sbjct: 745 KARDEAGASAQRSLSESNNLKAMVTAGSKGTFINISQMTACVG-QQNVEGKRIPYGFVDR 803
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF + +Y G ++ + GL P E H++ RE ++ ++ SE G +
Sbjct: 804 TLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 858
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS 755
+ L+ + DV++ YDGTVRN + +IQF Y + S
Sbjct: 859 QRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMDS 896
Score = 43.1 bits (100), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 12 GQIVGIRFGLATQKEICTASIS--------DCSISHASQLANPFLGLPLEFGKCESCGTS 63
++ ++FG+ + EI S+ D L++P LG KCE+C S
Sbjct: 13 ARVKTVQFGIISPDEIRQMSVCLIESSETYDRGKPKMGGLSDPRLGTIDRHTKCETCAGS 72
Query: 64 EPGKCEGHFGYIELPIPIYH 83
+C GHFG++EL P++H
Sbjct: 73 M-AECPGHFGHLELAKPMFH 91
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 176/701 (25%), Positives = 304/701 (43%), Gaps = 76/701 (10%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVP 158
+D + ++ + S +V + K I ++ + + G PQ +IL PVPP +
Sbjct: 179 DDTMEKKQIVSAEKVLSIFKHISDDDIEIM---GLSPQHSRPEWFILTLFPVPPPHIRPS 235
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--- 215
+ D DL+ + V + R+G P E + + LQ + +
Sbjct: 236 VMMDASMRGEDDLTYKLGDIVRNNNALREMERTGAPAHRLNE-QIHVLQAHIITIMNNDL 294
Query: 216 ---VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
R KS R + + +SQ K ++R + K FS R+VI+ D R+
Sbjct: 295 PGMPRAHQKSGRPIKS---ISQ----RLKGKEGRVRGNLMGKRVDFSGRTVISPDPNLRL 347
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+++GVP IA +T+ E V N+ ++ LV N + DGS ++
Sbjct: 348 DQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYIERLDGSKVNLAFVKNR 407
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G+ V R ++DGD V NR P+ HK S+ V V + ++N P +AD
Sbjct: 408 SDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSFRLNLSCTSPYNAD 467
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQS A+AEV++L V + ++S + + D L+ + ++ F+
Sbjct: 468 FDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDTFM 527
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP-------------PGF 488
+K L + +P PA+ K R WT Q+ +LP
Sbjct: 528 EKDLVMNLLLHFRGWDGVIPPPAILKPR--QLWTGKQLFSMILPDVNLVRFSNTHDDDDI 585
Query: 489 DSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
++ GD + LI + E+L G D+ T+ S N +V + E GPE + ++Q L+ L
Sbjct: 586 ENAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVTWKEHGPEGACDLISNIQTLVNHWL 645
Query: 548 FADGFSVSLEDFSLSKAALWN----IQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVK 603
GFS+ + D + +N I K + + L+ R + + EL L + + +
Sbjct: 646 LQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLV--RKAQEGELQLLPGKTMMESFE 703
Query: 604 MLVAKF---------------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
V K +LK++ + ++++ S + + Q +G Q + GK
Sbjct: 704 TGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQICACVG-QQNVEGKR 762
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
S HF +D P ++ G ++ + GL E H++ RE ++ ++
Sbjct: 763 ISYGFRRRTLPHFV----LDDLGPESR-GFVENSYLRGLTATEFFFHAMGGREGLIDTAV 817
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 818 KTSETGYIQRRLIKALEDVMVKYDGTVRN-STGLIVQFLYG 857
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 280/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + +G P+ +E ES LQ + Y++ + G ++ +
Sbjct: 74 DLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHIATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 186 TLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AE+ +L SV Q++S + + + D L + K+ + F++ Q L M
Sbjct: 306 QSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE--LDQLLNML 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLIK 498
P +P PA+ K W+ QIL +P G FD + LI
Sbjct: 364 YWVPDWDGIIPTPAIIKP--VPLWSGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLII 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ T+ S ++ + EKGP+ + F ++Q ++ +GFS + D
Sbjct: 422 DGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMFGNIQKVVNFWFLHNGFSTGIGD 481
Query: 559 --------------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHV 602
+ +K + + KE QA H M+ + D ++ N R
Sbjct: 482 TIADGGTMKEITETIADAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDK 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A+ L + + ++ + S + + Q + +G Q S GK + V+ HF
Sbjct: 542 AGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVG-QQSVEGKRIAFGFVDRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 601 SKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YD T RN N +IQF Y
Sbjct: 656 KALEDIMVHYDSTTRNSLGN-VIQFVYG 682
>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1444
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 293/694 (42%), Gaps = 92/694 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP + P + ++ DL+ +
Sbjct: 253 ELLGLNPEEVRPEM----------FLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R G+ Q
Sbjct: 302 VQSNINLKNAINKGAPVQTIIECWDYMQLQIAVYINSDVPGLQKADFGKPIR-GICQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D R++E+ VP +A +T+ ERV +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L+E V N T ++Y + G+ FL+ G VV R + DGD
Sbjct: 417 KLRERVRNG---TKIWPGANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q+ + L P
Sbjct: 534 MELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------GDRY 495
LP PA+ K + WT Q+ ++ P +S C D +
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNVLMRPSKESPVLVNLDAACREFRAPKGTPRDLDPNDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENHIR 600
+ + D + L ++ ++ Y+ L + + ++ QI +
Sbjct: 712 IGITDVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILS 771
Query: 601 HVK-----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V+ +A+ +S L + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGEQCIAELSKWNSPL-IMATSGSKGSTINVAQMIALVGQQII-AGQRVQDGFQD 829
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P P AK G ++ FF GL P E H+IS RE ++ ++ +E G
Sbjct: 830 RTLPHF----PKYARQPPAK-GFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGY 884
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 885 MSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
Length = 996
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 164/619 (26%), Positives = 270/619 (43%), Gaps = 50/619 (8%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E LQ V Y++ + G ++ +
Sbjct: 190 DLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQL-LQFHVATYMDNDIAGQPQALQK-- 246
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 247 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 301
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 302 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKV 361
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + HK S+ SV V T ++N + P +ADFDGD ++L P
Sbjct: 362 ERHIVDGDYIIFXXXXXXHKESMMGHSVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 421
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 422 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLW 481
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC-----------GDRYLIKKSE 501
+P+PA+ K A WT QIL V+P G + D LI E
Sbjct: 482 VPDWDGVIPQPAIVKP--LAMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGE 539
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G ++ + + ++ +F EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 540 LMYGLLNKKVVGASGGGVIHIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIP 599
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYL 619
+ + I++ + Q +T NEL L N + V+K + K+
Sbjct: 600 DRDTIAQIERAVIAQKEEVTAITASATANELESLPGMNVRETFESKVSKALNKARDDAGT 659
Query: 620 IDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--MDLN 670
+ KS ++ Q A G G + +S + VE F R P +
Sbjct: 660 VTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 719
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 720 YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 779
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YDGTVRN + I+QF Y
Sbjct: 780 YDGTVRNSLGD-IVQFVYG 797
>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
Length = 1010
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 163/639 (25%), Positives = 281/639 (43%), Gaps = 83/639 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 190 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 243
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 244 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 303
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 304 TYPETVTRFNISKLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 360
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P+ V V T ++N + P +ADFDGD ++L
Sbjct: 361 VERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 420
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 421 PQSEETRAELSQLCMVPLDIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 480
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 481 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 538
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ +GFS
Sbjct: 539 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWFLHNGFS 598
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ-----------------IE 596
+ + D + + I+ E+ + + R++ DL+
Sbjct: 599 IGIGDTVPDRGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFESKVSAAL 657
Query: 597 NHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
N R + LK S + + S + + Q +G Q S GK F
Sbjct: 658 NGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFKY 716
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y A G ++ + GL P E H+++ RE ++ ++
Sbjct: 717 RTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 766
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 767 AETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 804
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 179/728 (24%), Positives = 304/728 (41%), Gaps = 82/728 (11%)
Query: 82 YHPS-HISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
Y PS H S L LT A + D ++++ S V E+LK I +E L F +
Sbjct: 180 YQPSIHRSGLDLT--AEWKHVNEDSQEKKIVISAERVWEILKHITDEECFILGMDPKFAR 237
Query: 141 -DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
D I+ +PVPP C+ + G + DL+ + + E+IR+ ++G Q
Sbjct: 238 PDWMIITVMPVPPLCVRPAVVMFGAAKNQDDLTHKLSDIIKTNNELIRNEQAGAAAHVIQ 297
Query: 200 EVESNDLQLAVGQYLE---------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTL 250
E LQ V +++ V+ + K + V AR K ++R
Sbjct: 298 E-NIKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVKARL----------KGKEGRIRGN 346
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +Q+LV
Sbjct: 347 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQY 406
Query: 309 ----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
D LR K L+ G V R + D D V NR PT HK S+
Sbjct: 407 PGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHR 466
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 467 VKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 526
Query: 424 NLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFA---LSPLPRPALSKARCSARWTALQI 479
+ + D L +++ M K+ F++K + MF + +P+P + K + WT QI
Sbjct: 527 VMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWIGKMPKPCILKPK--PLWTGKQI 584
Query: 480 LQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINE 518
++P + S GD + +++ E++ G + T+ +
Sbjct: 585 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGS 644
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS 578
++ E G + F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 645 LLHICMLELGHDTAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKE 704
Query: 579 LLY------HRM---STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLID 621
+ H M T + EN + + K + + + L ++
Sbjct: 705 DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 764
Query: 622 SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKG 681
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 765 SGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVEN 818
Query: 682 CFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSN 741
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 819 SYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQ 878
Query: 742 SIIQFDYA 749
+IQ Y
Sbjct: 879 -LIQLRYG 885
>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
Length = 872
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 156/637 (24%), Positives = 277/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKDGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WRVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRSELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NMLYWIPNWDGVIPPPAVMKPK--QLWTGKQLLSMAIPKGIHLQRFDDGRDLSCPKDKGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++F EKGP+ + F ++Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVFREKGPQVCAQMFSAIQKVVNFWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE------------------- 596
+ D + I I+ + Q ++D Q+
Sbjct: 479 IGDTIADAETMKTITSTIREA------KDKVQEIILDAQLNKLEPEPGMTLRESFEHNVS 532
Query: 597 ---NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 533 RVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 592 FGDRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + ++ L D+++ YDGT RN + IIQF Y
Sbjct: 647 TGYIQRRIIKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
Length = 880
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 182/698 (26%), Positives = 305/698 (43%), Gaps = 90/698 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
E+++ + IP+E K L G P IL LPVPP + P I+ S D
Sbjct: 179 EIRDRFENIPDEDVKVL---GMDPSSARPEWTILTVLPVPPVTVR-PSITLESGQRSEDD 234
Query: 172 SIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L +++ + + +R +G P +++ LQ V + EV G +
Sbjct: 235 LTHKLVDIIRINQRFQENRDAGAPQLIIEDLWEL-LQYHVTTFFDNEVSGVPPARHR--- 290
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P T L+ F SG FS+R+V++ + +NE+GVPFEIA +
Sbjct: 291 ----SGRPLKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPEPNLSINEVGVPFEIAHQ 346
Query: 285 ITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF-----------LRPG 333
+T ERV NI+ L+ V L + ++Y +RE + ++ G
Sbjct: 347 MTIPERVTTRNIDLLRMYV---LRGSEVHPGANYVIREDGRRIRVSEINKEELAEKIQTG 403
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
VV R++MDGD V NR P+ HK S+ A V V T ++NP +C P +ADFDGD +++
Sbjct: 404 WVVERQLMDGDIVLFNRQPSLHKMSIMAHRVKVLPYKTFRLNPAVCPPYNADFDGDEMNM 463
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLA 453
Q+ ++AE L V++ +LS G + D + L ++ + + + T+ A
Sbjct: 464 HVLQTEESRAEASILMQVQENILSPRFGGPIIGGIHDHISGLFLLTRN---ENSITKTAA 520
Query: 454 MFALSP-----LPRPALSKARCSARWTALQILQSVLPPGF------------DSCGDR-- 494
+ L LP P+ A W QI +LP G D+C R
Sbjct: 521 LELLRKSDIRVLPEPSSYTADGEPLWNGKQIFSQILPKGLYLEFPAQVCFKCDTCKKRDC 580
Query: 495 -----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
+I+ E+++G D I + +I+ + E G E +F D L + +
Sbjct: 581 EYEAYVVIENGEMIQGTIDEQAIGAFKGKILDKVVKEYGTEAGAKFVDDFTRLAIRGVMK 640
Query: 550 DG--FSVSLEDF---------SLSKAALWNIQKEIQALYSLLYHRM--STQNELVDLQIE 596
G F +S ED +L A N+Q+ IQA + + T +E ++++I
Sbjct: 641 TGLSFGISDEDIPTTAKMQIANLLNEAEENVQRLIQAYEAKELEALPGRTMDETIEMKIM 700
Query: 597 NHIRHVK-----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
+ + + + L++S + + S + ++ + Q A +G Q + RG+ +
Sbjct: 701 QELGKARDQTGNIAGRQLGLENSAV-IMAKSGARGSMLNLTQMAACVG-QQAVRGERIRR 758
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF++ DL G +K + GL+P E H+I RE +V ++ S
Sbjct: 759 GYNGRTLPHFDK---GDLG--ADARGFVKASYKSGLNPTEYFFHAIGGREGLVDTAVRTS 813
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ G L + L+ L+D+ + YDG+VR I+QF Y
Sbjct: 814 QSGYLQRRLVNALQDLEVQYDGSVRET-RGVIVQFKYG 850
Score = 47.0 bits (110), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 18/84 (21%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFG-------------KCES 59
+I I+FGL + +E+ S++ SI A + G P++ G KC++
Sbjct: 10 RIGAIKFGLLSPREVRKMSVT--SIVTADTYDDD--GYPIDMGLMDLRLGVIDPGLKCKT 65
Query: 60 CGTSEPGKCEGHFGYIELPIPIYH 83
CG S G+C GHFG+IEL P+ H
Sbjct: 66 CG-SRAGECPGHFGHIELVAPVIH 88
>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
JCM 11548]
gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 884
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 217/876 (24%), Positives = 350/876 (39%), Gaps = 171/876 (19%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCGTSE 64
I IRFG+ + I S+ + + S +A+ LG+ +CE+CG +
Sbjct: 15 IKSIRFGILSPDMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVSEPGARCETCGQTH 74
Query: 65 PGKCEGHFGYIELPIPIYHPSHI-----------------------------------SE 89
C GHFG+IEL P+ H +
Sbjct: 75 -DVCPGHFGHIELVKPVIHVGYARIIYDVLRATCPNCGRIMLKDEEIKRYKERLDRLKGR 133
Query: 90 LKLTMYAFQLQIKNDGVAQRLLSSCCEVKE-------------------MLKRIPEETRK 130
+L Q +IK A+R C K ++K PE R+
Sbjct: 134 WRLLAQNLQEKIKKKA-AERATCPHCGYKRNKVRFERPYYFYEETENGALVKLDPETLRE 192
Query: 131 KLAGKGYFPQDGY---------------ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
+LA P D IL+ LPVPP + P I S D
Sbjct: 193 RLAK---VPNDDLELLGINPVVARPEWAILKVLPVPPPHVR-PSIQLETGIRSEDDLTHK 248
Query: 176 LKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGT-AKSSRDVDARFG 231
L +++ E ++ + +G P + + LQ V Y E+ G R G
Sbjct: 249 LVDIIRMNEKLKIALETGAPTNVVDNL-WDLLQYHVATYFDNELPGIPVAKHRGGRPLKG 307
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
++Q K + R K FS+R+VI+ D + +NE+GVP +IA+ +T ERV
Sbjct: 308 IAQ----RLKGKEGRFRGSLSSKRVNFSARTVISPDPHISINEVGVPIDIAKVLTVPERV 363
Query: 292 NVHNINYLQELV-----------------DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQ 334
NI+ L+E V ++ L Y + + R L PG
Sbjct: 364 TTWNIDALREYVLRGPEAWPGANYVITPEGRRIDLRYVKDRRALAER--------LAPGW 415
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+V R ++DGD V NR P+ H+ S+ V V T +++ +C P +ADFDGD ++L
Sbjct: 416 IVERHLVDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEMNLH 475
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDK---AFTQ 450
PQ+ A+AE L VEK +++ G + D ++ ++ K FL K A+
Sbjct: 476 VPQTEEARAEARTLMLVEKHIITPRYGGAIIGARQDYIIGAYLLSHKSTFLTKKEVAYLL 535
Query: 451 QLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDRY------ 495
A P P PA+ WT QI+ LP + C D Y
Sbjct: 536 GAGKSAEDP-PEPAILHP--VELWTGKQIISHFLPKDLNWVQPTAFKSKCQDAYTCDGDE 592
Query: 496 --LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
++ ++KG D+ +I + ++ + I + PE + DS L + L GF
Sbjct: 593 WIIVINGNLVKGVLDKKSIGAEQVDSLWHRIARDYPPEVAGRWLDSSLRLFLRWLDLRGF 652
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS----LLYHRMSTQNE-----LVDLQIENHIRHV- 602
+ ++ L K A + K I++ L+ S + E V+ EN I V
Sbjct: 653 TFGMDSVYLPKEAYDELDKLIESGLKKADELIQEFKSGRLEAMPGFTVEETFENKITEVL 712
Query: 603 -------KMLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+V K+I K+S GYL+ + + ++ +VQ LG Q + RG+ +
Sbjct: 713 SRVREDAATVVEKYIRKNSE-GYLMAKTGARGSIVNIVQMVATLG-QQTIRGERIRRGYR 770
Query: 655 EDIASHFERIYPM-DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF P+ D+ G +K CF GL P E H+ + R+ ++ ++ ++
Sbjct: 771 TRTLPHF----PVGDIGAYVG--GFVKSCFRCGLSPVEYFFHAAAGRDGLIDTAVRTAQS 824
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L+DV + YDGTVR ++++Q Y
Sbjct: 825 GYMQRRLINALQDVYVAYDGTVR-FSGSTLLQVLYG 859
>gi|340379445|ref|XP_003388237.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Amphimedon queenslandica]
Length = 1402
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 189/730 (25%), Positives = 315/730 (43%), Gaps = 97/730 (13%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
AQ +L+ +V + + IP+E L AG+ P+D I+ L VPP C+ +S
Sbjct: 213 AQEILTPL-KVLNLFRNIPDEDIVLLGMTLAAGR---PED-LIVTRLLVPPLCIRPSVVS 267
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
D + + D L+ ++ ++I R+ E + LQL V Y+ EV G
Sbjct: 268 DTQAGTTEDDVTIKLRDIIFANDVIHRHRTTGAKVEMILEMWDYLQLQVALYINSEVSGI 327
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRV 272
S P TT+ ++++++ R K FS R+VI+ D R+
Sbjct: 328 PPS-----------MIPKKTTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNMRI 376
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKG 326
+++ VP +A+ +T+ E+V HNI +++LV N G + L+ G +
Sbjct: 377 DQVAVPIHVAKIMTYPEKVTKHNIGLMRQLVINGPDKHPGANFMTHKGQNKRFLKYGDRK 436
Query: 327 H--TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
+ L+ G +V R ++DGD V NR P+ HK S+ A V V T + N +C P +A
Sbjct: 437 KIASELKHGDIVERHMIDGDVVLFNRQPSLHKLSIMAHFVKVMPHRTFRFNECVCTPYNA 496
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL-LSLKVMFKKYF 443
DFDGD ++L PQ+ AKAE L L V+ L++ NG + D + S + K F
Sbjct: 497 DFDGDEMNLHLPQTEEAKAEALVLMGVKSNLVTPRNGEPLIAAIQDFISASFLLTQKDVF 556
Query: 444 LDKAFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPP--------- 486
D+A Q+ LS +P PA+ K WT Q++ ++ P
Sbjct: 557 FDRAQFFQIVSAMLSNHDSNIKIDIPPPAIIKP--VKLWTGKQVMSVLISPNKKSNVIIN 614
Query: 487 ----------GFDSCGDR--YLIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVL 533
G D C + +I S L G D+ T+ S N I + + G +E
Sbjct: 615 LRAKGKQYTKGEDMCSNDSFVVIHNSSHLCGSLDKATLGSGSKNSIFFVLLRDYGEQEAA 674
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---------QALYSLLYHRM 584
+ L L L GFS+ + D + + L N + ++ Q + S L ++
Sbjct: 675 DCMSRLARLTPYYLSNRGFSIGIGDVTPGR-GLVNAKNKLVEEGYANCDQFIQSFLDKKL 733
Query: 585 STQ-----NELVDLQIENHIRHVKMLVAKF----ILKSSTLGYLIDSKSDSAVSKVVQQA 635
TQ +E ++ +I + + ++ K + ++T + S + + Q
Sbjct: 734 QTQPGCTADETLEAKIVHELSKIREDSGKVCKTELHPTNTPLNMALCGSKGSFINISQMI 793
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
+G Q + GK + HF P + P AK G +K F+ GL P E H
Sbjct: 794 ACVG-QQAISGKRTPDGFEDRTLPHF----PRNSKAPAAK-GFVKNSFYTGLVPTEFFFH 847
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS 755
++ RE +V ++ +E G + + L+ L D+ YD TVR+ I+QF Y +
Sbjct: 848 TMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDNTVRD-SDGHIVQFIYGGDGLDP 906
Query: 756 HSLFPAGEPV 765
++ +PV
Sbjct: 907 AAMEGKDKPV 916
>gi|397135862|gb|AFO11426.1| RNA polymerase I, partial [Dekkera bruxellensis]
Length = 793
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 165/645 (25%), Positives = 280/645 (43%), Gaps = 78/645 (12%)
Query: 158 PDISDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE- 215
P ++ S S D L +LK + + + G+P E E+ LQ V Y++
Sbjct: 5 PSVAFTDSKRSEDDLTYKLADILKANINVQKFQMDGSPQHVINEFEAL-LQYHVATYMDN 63
Query: 216 -VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYK 270
+ G ++ + S P + +A L ++R + K S+RSVI+GD
Sbjct: 64 DIAGQPQALQK-------SGRPIKSIRARLRGKEGRLRGNLMGKRVDSSARSVISGDPNI 116
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGS 324
++++GVP +AQ +T+ E V +NI L +LV N D LR
Sbjct: 117 ELDQVGVPRTVAQTLTYPEVVTPYNIGQLTQLVRNGPNQYPGARYVIRDSGERIDLRFNK 176
Query: 325 K-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
+ G L+ G V R +MDGD V NR P+ HK S+ V V T +IN + P +
Sbjct: 177 RAGDIQLQYGWKVERHLMDGDPVLFNRQPSLHKMSMMCHKVRVMPFSTFRINLSVTTPYN 236
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKY 442
ADFDGD +++ PQS KAE+ E+ +V +Q++S + + + D L+ ++ M +
Sbjct: 237 ADFDGDEMNMHVPQSYETKAELEEICAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDS 296
Query: 443 FLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQI----------LQSVLPPG 487
F+ A+ Q + M +P +P+PA+ K R WT Q+ LQ V P
Sbjct: 297 FV--AYDQLMNMCFWNPGWDGVVPQPAVLKPR--PXWTGKQVFSLTIPRGIFLQRVDGPP 352
Query: 488 FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
LI+ +V+ G ++ T+ + ++ + EKGP E S+Q + L
Sbjct: 353 LSPRDSGMLIRNGDVMFGVVNKATVGTSSGGLIHTCMREKGPRECARMIGSIQKVCNYWL 412
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ------------- 594
+GFS+ + D + I K I + Q + D Q
Sbjct: 413 LHNGFSIGIGDAIADPDTMKTITKTIATA------KDQVQGVIADAQANRLQPEPGMTVR 466
Query: 595 ---------IENHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
I N R A+ LK S+ + ++ + S + + Q + +G Q+ +
Sbjct: 467 ESFEQKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE 526
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
+ Y + HF + +Y G ++ + GL P E H+++ RE ++
Sbjct: 527 GRRIYFG-FADRSLPHFTKD-----DYSAESKGFVENSYLRGLTPQELFFHAMAGREGLI 580
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + L+ L D+++ YDGT RN + +IQF Y
Sbjct: 581 DTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGD-VIQFLYG 624
>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
Length = 1023
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 284/646 (43%), Gaps = 97/646 (15%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P ++E+++ LQ V Y++ ++D
Sbjct: 195 DLTFKLGDIIRANQNLIRVNAEGAPEHIAKELQAL-LQYHVATYMD-----NDIANLDKA 248
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 249 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTL 308
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLR-EGSK---------GHTFLRPGQV 335
T+ E V +NIN L LV + + Y +R +G + L+ G
Sbjct: 309 TYPETVTQYNINKLARLVASG---PEQHPGARYIIRPQGERIDLRFHKNTSQIILQNGWK 365
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 366 VERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 425
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 426 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIML 485
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD----------SCGDRY------ 495
+ +P+PA+ K R RWT Q++ VLPP + G+R+
Sbjct: 486 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKPNLPAGERFAPAGDS 543
Query: 496 --LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+ ++L G F++ ++ + N I+ +I+ E G E + FF+ Q ++ L +GFS
Sbjct: 544 GLFVADGQLLFGLFNKKSVGTGSNGIIHTIYNEFGHETAMGFFNGAQTVVNYWLLHNGFS 603
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 604 IGIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 663
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 664 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 716
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 717 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 764
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 765 IDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYG 809
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 176/729 (24%), Positives = 304/729 (41%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A + D +++ S V E+L+ I +E L F +
Sbjct: 159 YQPS-IRRAGLDLTAEWKHVNEDSQEKKISLSAERVWEILRHITDEECFILGMDPKFARP 217
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D I+ LPVPP C+ + G + DL+ + + E++R+ ++G
Sbjct: 218 DWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVVAD 277
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 278 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 324
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +Q+LV
Sbjct: 325 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQDLVRRGNSQ 384
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 385 YPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 444
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 445 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 504
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+PA+ K + WT Q
Sbjct: 505 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPK--PLWTGKQ 562
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ E++ G + T+ +
Sbjct: 563 VFSLIIPGNVNMIRTHSTHPDEEDDGPYRWISPGDTKVMVEHGELVMGILCKKTLGASAG 622
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA-- 575
++ F E G E F+ ++Q ++ L +G S+ + D IQ+ I+
Sbjct: 623 SLLHICFLELGHEVCGLFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAK 682
Query: 576 --LYSLLY--HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ +++ H M T + EN + + K + + + L ++
Sbjct: 683 EDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 742
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 743 VAGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 796
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 797 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 856
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 857 -QLIQLRYG 864
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 184/699 (26%), Positives = 315/699 (45%), Gaps = 93/699 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
E ++ +RI EE+ + G+ P+ + I++ L V P + P +S G + S D
Sbjct: 190 EAHKVFERIDEESCTLM---GFQPKISRPENMIIKNLAVAPPPVR-PSVSMGNTMRSEDD 245
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTA----KSSRD 225
K+L+ +++ N + V + LQ V + E++G KS +
Sbjct: 246 LTYCYIKILQTNIALQTQIQKGANLTTINVLRDSLQYYVATVMDNEIQGQPTQKHKSGKP 305
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
+ A S + ++R + K FS+R+VIT D R++++GVP +IA +
Sbjct: 306 LKAI-------RSRLRGKEGRLRGNLMGKRVDFSARTVITPDPILRLDQLGVPQQIALNL 358
Query: 286 TFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYS-LREGSKGHTFLRPGQVV 336
T E V NI+ ++ LV N K + + + S L+ S H + PG V
Sbjct: 359 TVPETVTAENIDEMRYLVQNGPTQWPGAKYIIRHDERQIDLSQLKNRSDLH--IEPGFKV 416
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R + + D V NR P+ HK SL V V T ++N + P +ADFDGD +++ P
Sbjct: 417 ERHLRNDDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVP 476
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAM- 454
QS AEV E+ +V Q++S + + + D+LL + + K F++K QL M
Sbjct: 477 QSYETMAEVKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMW 536
Query: 455 --FALSPLPRPALSKARCSARWTALQILQSVLP---------------PG---FDSCGD- 493
+ LP PA+ K + WT QI ++P P +DS GD
Sbjct: 537 INYEDDKLPPPAILKPK--PLWTGKQIFSLIIPDINIQKVGERQKKGEPKNLIWDSAGDN 594
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L++K E+L G+ + TI S ++ I+ EKGP +F + Q ++ L GF+
Sbjct: 595 NILMRKGELLCGNLTKSTIGSSSGGMIHVIWKEKGPYVTRDFMSNTQLVINNWLHQHGFT 654
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE----------------- 596
V ++D K + I +E ++ +++ + ++ L+ +
Sbjct: 655 VGVQDIIAKKEIVQKI-RESMVIFKKKVQQITQKAQMGKLKTQPGKGMMDSFEASVNQCL 713
Query: 597 NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
N R +A L+S + L ++ + S + + Q +G Q + GK F+
Sbjct: 714 NKARDDCGNMALADLQSWNRLKAMVYAGSKGSNLNISQIMACVG-QQNVEGKRIPFGFHR 772
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
++L HF + D P +K G ++ C+ +GL P E H++ RE ++ ++
Sbjct: 773 RSL-----PHFSK----DDYGPESK-GFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKT 822
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV++ YDGTVR IIQF Y
Sbjct: 823 AETGYIQRRLIKALEDVMVKYDGTVR-TSKEQIIQFLYG 860
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 13 QIVGIRFGLATQKEICTASI---------SDCSISHASQLANPFLGLPLEFGKCESCGTS 63
++ ++FGL E+ S+ D I + S + +P +G + +C +C S
Sbjct: 18 KVRAVQFGLLNPDEVRKMSVVNINNERTYDDRGIPNFSGINDPRMGTMDKELRCFTCKGS 77
Query: 64 EPGKCEGHFGYIELPIPIYH 83
+ C GHFG+IEL P+YH
Sbjct: 78 Q-ADCPGHFGHIELAKPVYH 96
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 188/770 (24%), Positives = 321/770 (41%), Gaps = 93/770 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P+ I L M + D ++++ + V E+ K I +E L Y
Sbjct: 181 YQPT-IRRQGLEMTGEWKHVNEDSQEKKIVLTAERVWEIFKHISDEECAILGMDPKYARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I+ LPVPP + + G + DL+ + V E+ R+ +SG E
Sbjct: 240 DWMIVTCLPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNELQRNEQSGAAAHIIAE 299
Query: 201 VESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTL 250
LQ V ++ R KS R P + KA L+ ++R
Sbjct: 300 -NIKMLQFHVATMVDNDSPGLPRAQQKSGR-----------PIKSVKARLKGKEGRIRGN 347
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT 310
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI +QELV
Sbjct: 348 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIEKMQELVQRG---N 404
Query: 311 YSDGSSSYSLRE-GSKGHTFLRP---------GQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
+ Y +RE G + P G V R I DGD V NR PT HK S+
Sbjct: 405 SQYPGAKYIIRENGDRIDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPTLHKMSMM 464
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 465 GHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQA 524
Query: 421 GNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTA 476
+ + D L +++ M K+ FL+K L MF + +P+PA+ K R +WT
Sbjct: 525 NKPVMGIVQDTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPR--PQWTG 582
Query: 477 LQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSV 515
Q+ ++P + S GD + +++ E++ G + T+ +
Sbjct: 583 KQLFTLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGAS 642
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-Q 574
++ IF E G E F+ ++Q ++ L +G S+ + D +IQ I +
Sbjct: 643 AASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLDIQATIKK 702
Query: 575 ALYSLLYHRMSTQNELVDLQIENHIRHV------KML----------VAKFILKSSTLGY 618
A ++ + N+ ++ N +R ++L K + + + L
Sbjct: 703 AKEDVIEVIQKSHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA 762
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
++ + S + + Q +G Q + GK + HF + +Y G
Sbjct: 763 MVVAGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGF 816
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 817 VENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNS 876
Query: 739 CSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSS 788
+IQ Y + + S+ + +SN A++ PS+
Sbjct: 877 VGQ-LIQLRYGEDGLSAESV-----EFQTMPTVKLSNKAFEKKFKFEPSN 920
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+++ I + L +P G+ +C++C +
Sbjct: 18 VQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGVIDRSARCQTCAGNM-N 76
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+I+L P+YH
Sbjct: 77 ECPGHFGHIDLAKPVYH 93
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 191/787 (24%), Positives = 322/787 (40%), Gaps = 99/787 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A + D +++ S V E+LK I +E L F +
Sbjct: 182 YQPS-IRRSGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFILGMDPKFARP 240
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D I+ LPVPP + + G + D++ + E+IR+ ++G
Sbjct: 241 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDITHKTSDIIKSNNELIRNEQAGAAAHVISE 300
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 301 NIKMLQFHVATLVDNDMP---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRG 347
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 348 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQ 407
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 408 YPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 467
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++
Sbjct: 468 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANK 527
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+PA+ K + WT Q
Sbjct: 528 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPK--PLWTGKQ 585
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ E++ G + T+ +
Sbjct: 586 VFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 645
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ F E G E +F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 646 SLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 705
Query: 578 SLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 706 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 765
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 766 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 819
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 820 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 879
Query: 741 NSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYKAVLDSSPSSNN------SW 792
+IQ Y + GE V L +SN A++ P++ +
Sbjct: 880 Q-LIQLRYGEDGL-------CGETVEFQNLPTIKLSNKAFEKKFKFDPTNERHLRRIFNE 931
Query: 793 ELMKEIL 799
++MKE++
Sbjct: 932 DIMKELM 938
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 192/799 (24%), Positives = 330/799 (41%), Gaps = 123/799 (15%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P I L + A + D +++ + V E+ + I +E L F +
Sbjct: 180 YQPK-IRRAALELTAEWKHLNEDSQEKKIALTAERVHEIFRHISDEECYILGMDPKFARP 238
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP C+ + G + DL+ + + E+ R+ +G + S+
Sbjct: 239 DWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNELKRNEETGAATHILSE 298
Query: 200 EVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRT 249
V+ LQ V ++ R KS R P KA L+ ++R
Sbjct: 299 NVKM--LQFHVATLVDNDMPGLPRAMQKSGR-----------PLKAIKARLKGKEGRIRG 345
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV------ 303
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 346 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 405
Query: 304 -----------DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 352
D ++ L + SS L+ G K V R I DGD + NR P
Sbjct: 406 YPGAKYIIRDNDERIDLRFHPKSSDLHLQCGYK----------VERHIRDGDLIIFNRQP 455
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
T HK S+ V V T ++N + P +ADFDGD ++L PQS+ +AEV +
Sbjct: 456 TLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITT 515
Query: 413 KQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALS 466
+Q+++ + + D L +++ M K+ FL+K Q + P +P+PA+
Sbjct: 516 RQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKE--QMFNVLMHLPIWDGKMPQPAIL 573
Query: 467 KARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKG 505
K + WT Q+ ++P + S GD + +++ E++ G
Sbjct: 574 KPK--PLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDGPYKWISPGDTKVMVEHGELVMG 631
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
+ T+ + ++ F E G E +F+ ++Q ++ L +G S+ + D
Sbjct: 632 ILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQT 691
Query: 566 LWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAK 608
IQK I+ + H M T + EN + + K
Sbjct: 692 YLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKK 751
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
+ + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 752 SLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IK 805
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V+
Sbjct: 806 DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 865
Query: 729 ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYKAVLDSSP 786
+ YDGT+RN +IQ Y + AGE V L +SN A++ P
Sbjct: 866 VHYDGTIRNSVGQ-LIQLRYGEDGL-------AGEHVEFQSLPTVKLSNRAFEKKFKFDP 917
Query: 787 SSNN------SWELMKEIL 799
S+ + ++MKE++
Sbjct: 918 SNERYLRRVFTEDIMKEVM 936
Score = 47.0 bits (110), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGT 62
Q+ ++FG+ + EI S ++ I + L +P G+ +C++C
Sbjct: 13 QVKKVQFGILSPDEIRRMSATEGGIRYPEVMEGGRPKLGGLMDPRQGVVDRLSRCQTCAG 72
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSS--CCEVKEM 120
+ +C GHFG+I+L P+YH ++++ T+ +LL S +KE+
Sbjct: 73 NMT-ECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCF------YCSKLLVSPTTPRIKEI 125
Query: 121 LKRIPEETRKKLAG 134
L++ + RK+LA
Sbjct: 126 LQKSKGQPRKRLAA 139
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 182/647 (28%), Positives = 292/647 (45%), Gaps = 58/647 (8%)
Query: 143 YILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
+I + +P PP C+ P IS DG ST DL++ + + + I + GTP ++
Sbjct: 252 FIWQCIPAPPVCIR-PSISQDGAST-EDDLTVKLTEIIWTNSLIKSALEKGTP-IQNLME 308
Query: 202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
+ + LQL V Y+ E+ G + + R G Q K + R K FS
Sbjct: 309 QWDYLQLCVAMYINSELPGISSQANTKPMR-GFCQ----RLKGKQGRFRGNLSGKRVDFS 363
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTY 311
+R+VI D +++I +P IA+ +T+ E+V +NI L++ + N +
Sbjct: 364 ARTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIINGPDIHPGANYIMNQ 423
Query: 312 SDGSSSYSLREGSKGHTFL--RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
+G + L+ G + L + G VV R I D D V NR P+ HK S+ L V
Sbjct: 424 ENGFKKF-LKFGDRQKMALELKIGDVVERHIRDDDIVLFNRQPSLHKLSI--LCHKVRPW 480
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N +C P +ADFDGD ++L PQ+ A+AE +EL SV+ L++ NG+ +
Sbjct: 481 KTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMSVKNNLVTPRNGDPIIAAIQ 540
Query: 430 DALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSV 483
D + + ++ +K F D+ + F + LP P + K + + ++
Sbjct: 541 DFVTASYLISQKDNFYDRKTFTHICSFMVDANMHIDLPSPVIIKPVPYGQESKY-LMSFS 599
Query: 484 LPPGF-DSC-GDRY-LIKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSL 539
P G D C D Y LI+ SE++ G D+ T+ N I I GP E E + L
Sbjct: 600 SPKGIPDLCINDGYLLIRGSEIMCGVMDKSTVGDGKKNSIFYVILKNYGPTEAAEAMNRL 659
Query: 540 QPLLMENLFADGFSVSLEDF-----------SLSKAALWNIQKEIQALYS--LLYHRMST 586
L + GFS+ + D SL KAA + I AL S L
Sbjct: 660 AKLCARWIGNHGFSIGINDVQPGVLLKKKKESLVKAAYQSCDDLIYALSSGKLENQPGCD 719
Query: 587 QNELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQL 642
+ ++ ++ + V+ V + + + T LI + S SK V Q +G Q+
Sbjct: 720 AEQTLEAKVSGILSKVRDDVGQICMSELARTNASLIMATCGSKGSKINVSQMVSCVGQQI 779
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
G + HF++ + + G +K F+ GL P E + H+IS RE
Sbjct: 780 IS-GSRVPNGFQDRSLPHFQK----NCKFQPPAKGFVKNSFYSGLTPTEFLFHAISGREG 834
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+V ++ +E G + + LM L D+ + YDGTVRN S+ I+QF Y
Sbjct: 835 LVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRN-SSSGIVQFIYG 880
>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1404
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 185/743 (24%), Positives = 314/743 (42%), Gaps = 93/743 (12%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVP 158
Q N V + L + +V ++ KRI E + L + Y + +I +Y+ VPP C+
Sbjct: 204 QYINKAVMEDL--NALKVLDLFKRISAEDCELLGLRPEYNRPEEFIWQYISVPPVCIRPS 261
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRG 218
DG S DL++ + + V I + G P + E + LQL+VG Y+
Sbjct: 262 VQQDGASN-EDDLTVKLTEIVFTNALIRQGLAKGAPTAQLME-QWEFLQLSVGMYINSEM 319
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNE 274
S+ + Q P L+ + F SG FS R+VI+ D R++E
Sbjct: 320 PGVPSQ-------MGQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDE 372
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTY------SDGSSSYS--LREGSKG 326
+ VP +A+ +T+ ERV NI+ L++ V N C + + GSS + L+ G++
Sbjct: 373 VAVPERVAKILTYPERVTGFNIDRLRKAVRNG-CDVHPGANYVTAGSSGFKKYLKFGNRE 431
Query: 327 HTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
LR G +V R I+DGD V NR P+ HK S+ V V + ++N +C P +A
Sbjct: 432 GIADGLRTGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCNPYNA 491
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--Y 442
DFDGD ++L PQ+ A+ E LEL +V+ +++ NG + D + + ++ ++ +
Sbjct: 492 DFDGDEMNLHVPQTEEARTEALELMNVKHNMVTPRNGEPVIAAIQDFITASYLLSRRDQF 551
Query: 443 FLDKAFTQQLAMFALSPL----PRPALSKARCSARWTALQILQSVLPPGFDS-------- 490
F + FTQ + FA + L P P + K WT Q+ ++ P S
Sbjct: 552 FDRRQFTQICSYFADADLQIDIPPPTIWKP--VRLWTGKQVFNVLMHPNKKSNVLVNVET 609
Query: 491 -CGDR------------------------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFF 525
C ++ +I SE++ G D+ T+ ++V I
Sbjct: 610 KCNNQQKPDSKAYPRIKDPAPDLSPNDGWLVIVNSEIMCGVMDKATVGGGKKKMVFGIIM 669
Query: 526 -EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM 584
+ GP E + L L L GFS+ + D ++ Y+ +
Sbjct: 670 RDYGPHEAAAAMNRLAKLCARWLANFGFSLGINDVIPGPILSEKKDDLVEKAYAKCLDMI 729
Query: 585 S-------------TQNELVDLQIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSA 627
+ Q + ++ I + V+ V + + + + + S +
Sbjct: 730 TLAKKGKLENKPGCDQEQTLEAMISGVLSKVREEVGQICMEELSRHNAPLIMATCGSKGS 789
Query: 628 VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGL 687
V V Q +G Q+ G + HF P P +K G ++ F+ GL
Sbjct: 790 VINVSQMVACVGQQII-AGHRVPDGFQDRSLPHF----PKKSREPPSK-GFVRNSFYSGL 843
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
P E + H+IS RE +V ++ +E G + + LM L D+ YD +VRN + ++QF
Sbjct: 844 SPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRN-ATGGVVQFR 902
Query: 748 YAVNARKSHSLFPAGEPVGVLAA 770
Y + L +P+ + A
Sbjct: 903 YGDDGLDPACLEGDAQPIEFVRA 925
>gi|424812808|ref|ZP_18238048.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339757030|gb|EGQ40613.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 823
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 190/808 (23%), Positives = 335/808 (41%), Gaps = 116/808 (14%)
Query: 25 KEICTASISDC-SISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYH 83
KEI A + D + +P LG+ C++CG E C+GHFG IEL P+ H
Sbjct: 23 KEITEAEVYDADGFPVEDGVMDPALGVIDPGMTCQTCG-GEIRDCKGHFGMIELSRPVVH 81
Query: 84 PSHISELKLTMYAFQLQIKNDGV------------------------------------- 106
H +++ + F +ND V
Sbjct: 82 VLHAKKIR-NLLRFTHVNENDNVTLLLKDEDKALRKSNRMKEDPETGEEVPEIDIEKPYT 140
Query: 107 ----AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISD 162
++L+ +VKE L RIP++T KL +G P++ ++ +LPVPP + P I+
Sbjct: 141 FYRDGEKLMPG--DVKERLSRIPQDTAAKLGVEGGNPEN-LVITHLPVPPVTMR-PSITL 196
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE--SNDLQLAVGQYLEVRGTA 220
S D K V++IR ++ N E + E +DL + L+
Sbjct: 197 DTGERSED------DLTHKLVDVIRINKRLQNNIEIEAPEFIIDDLH----ELLQYHVAT 246
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKM-------RTLFIRKGSGFSSRSVITGDAYKRVN 273
D+ + K+ +E++ R I K FS+R+VI+ D +N
Sbjct: 247 AFYNDMSSVPPARHRSGRALKSLIERVQGKEGRFRQNLIGKRVNFSARTVISPDPNIGIN 306
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPG 333
E+G+P+++A+++T VN N+ +E V N + ++Y + +
Sbjct: 307 EVGIPYQVAKKLTIPVEVNEQNLEQAREWVRNG---SEEHCGANYVFQPNGQRRKITDEN 363
Query: 334 Q-------------VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
Q V R + DGDTV NR P+ H+ S+ A + V T +INP +C
Sbjct: 364 QEELAEEMSAEAGWKVERHLQDGDTVLFNRQPSLHRLSILAHEIKVLPYRTFRINPNVCA 423
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQ+ A+AE EL V++ + G + + D + L ++ +
Sbjct: 424 PYNADFDGDEMNLHVPQTEEARAEAEELLKVQEHVKMPKTGGPIVGMLQDYVSGLYLLTQ 483
Query: 441 KYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRY 495
+ ++ + Q + A + L T +++ +P D + +
Sbjct: 484 E-GVELSREQAFNLLAEAGEHEAELPDGDI---VTGRELVSLFVPDDIDITINENEPNEV 539
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ +++ G D D + EI+ + G ++V EF + + + L GFS+S
Sbjct: 540 RIEDGQLVDGQLDDDALSDYGGEIIQQLKIHYGSDKVAEFLNRVSRIGAIYLSRRGFSIS 599
Query: 556 LEDFSLSKAALWNI----------------QKEIQALYSLLYHRMSTQNELVDLQIENHI 599
++D + + I Q E L ++ + E+ Q N+I
Sbjct: 600 IDDLEIPDDSTDEIHGLIDGAVDDANEVLDQYETDELEAITGKTLEETREIRVTQALNNI 659
Query: 600 -RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
V ++++ + S+ + DS + ++ V AG +G Q S R + ++ E
Sbjct: 660 FTEVGDIISENVDSESSAYIMADSGARGSMQNVTTMAGLMG-QESVRDQRVNRGYKERTT 718
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
SHF+R P +K G + G DP + +S R+ ++ S G +++
Sbjct: 719 SHFKR----GEVSPESK-GFVANSIMEGFDPLDMFFEQMSQRKALMDKSLRTKTSGYMYR 773
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQF 746
+ L+D+ + YD TVRN I+QF
Sbjct: 774 RVSNSLQDLTVDYDQTVRN-AEGEIVQF 800
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 157/631 (24%), Positives = 279/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANINVQRLELDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDR-Y 495
M P +P PA+ K + WT Q+L +P G S D
Sbjct: 361 NMLYWIPDWDGVIPPPAVIKPK--PLWTGKQLLSMAIPKGIHIQRLDGGTSMLSPKDTGI 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV- 554
LI E++ G D+ T+ + ++ ++ EKGP+ + F +LQ ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATSGGLIHTVMREKGPQVCAKLFSALQKVVNYWLLHNGFSIG 478
Query: 555 ---SLEDFSLSKAALWNIQKEIQALYSLLY----HRMSTQNELVDLQ--------IENHI 599
++ D K I++ Q + ++ +R+ + + + + N
Sbjct: 479 IGDTIADSDTMKTVTTTIEEAKQKVQEIILDAQKNRLEPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 156/635 (24%), Positives = 273/635 (42%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 220 DLTFKLADIIKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 278
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 279 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLS 328
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L E V N D LR + G L+ G
Sbjct: 329 IARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 388
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 389 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 448
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 449 HVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YEQVM 506
Query: 453 AMFALSPL---PRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY-------LI 497
M P P + + W+ QIL +P G FD D LI
Sbjct: 507 NMLYWIPNWDGVIPPPAIIKPKPLWSGKQILSMAIPKGIHLQRFDDGNDMLSPKDKGILI 566
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKG + + F S+Q ++ L +GFS+ +
Sbjct: 567 VDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNYWLLHNGFSIGIG 626
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D K + ++ IQ + Q ++D Q +
Sbjct: 627 DTIADKDTMRDVTTTIQEA------KQKVQEIIMDAQQNRLEPEPGMTLRESFEHNVSRV 680
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 681 LNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFA 739
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 740 DRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 794
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 795 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 828
Score = 44.7 bits (104), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L +P LG KC++CG + +C GHFG+IEL P++H I+++K
Sbjct: 13 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIK 60
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 179/713 (25%), Positives = 301/713 (42%), Gaps = 100/713 (14%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGV 164
V ++ S V +LKRI +E + L Y D IL+ LP+PP + + D
Sbjct: 206 VERKQTLSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRG 218
S DL+ + + + R R+G+P E + LQ + Y + R
Sbjct: 266 SRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRA 324
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
T +S R + + S KA ++R + K FS+R+VIT D ++++GVP
Sbjct: 325 TQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 377
Query: 279 FEIAQRITFEERVNVHNINYLQELVD--------------------NKLCLTYSDGSSSY 318
+ IA +T+ E V +NI L+ELV+ +L L Y SS +
Sbjct: 378 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 437
Query: 319 SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 378
L G K V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 438 HLELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
Query: 379 CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM 438
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + +
Sbjct: 488 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 547
Query: 439 FKKYFLDKAFTQQLAMFAL-------SPLPRPALSKARCSARWTALQILQSVLPP----- 486
K+ D T+ + M L +P PA+ K WT Q+ ++P
Sbjct: 548 TKR---DTFITKDVFMNILMWWEDFDGKVPAPAILKP--EPLWTGKQVFNLIIPKQINLI 602
Query: 487 -----------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
G + GD + I+K E+L G + T+ + ++ I+ E GP+ +
Sbjct: 603 RYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 662
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE----- 589
F Q L+ L + FS+ + D + + I + I A + + E
Sbjct: 663 FLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEA 722
Query: 590 -----LVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
++D EN + K + +S+ L ++ + S + + Q
Sbjct: 723 EPGRTMMD-SFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 781
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
+G Q + GK ++ HF + +Y G ++ + GL P E H+
Sbjct: 782 CVGQQ-NVEGKRIPYGFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHA 835
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 836 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ--------LANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S+ ++ L++P LG KCE+C T+ +C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETC-TASMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P++H
Sbjct: 77 PGHFGHLELAKPMFH 91
>gi|397779348|ref|YP_006543821.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
gi|396937850|emb|CCJ35105.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
Length = 882
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 186/760 (24%), Positives = 314/760 (41%), Gaps = 94/760 (12%)
Query: 71 HFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRK 130
H G +L I P+ SE+ + DG + +++ L++IP++ +
Sbjct: 141 HCGEQQLKINFEKPTTFSEVFV----------EDGRKVEHKLTPADIRARLEKIPDDDLR 190
Query: 131 KLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSS 189
+ + + IL LPVPP + I + DL+ ++ + +
Sbjct: 191 LMGVNPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQ 250
Query: 190 RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM 247
+G P +++ LQ V YL EV G + S P T L+
Sbjct: 251 DAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR-------SGRPLKTLSQRLKGK 302
Query: 248 RTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
F SG FS+R+VI+ D + E+G+P IA +T R+ NI +++ V
Sbjct: 303 EGRFRGSLSGKRVNFSARTVISPDPNLSIGEVGIPLAIANEMTVPVRITPFNIEEMRQYV 362
Query: 304 DNKLC--LTYSDGSSSYSLREGSKGHTF-----------LRPGQVVHRRIMDGDTVFINR 350
N S ++Y +R ++ L PG V R++ DGD V NR
Sbjct: 363 LNGPVRPTIRSPCGANYVIRPDNRRMRLSDVNLETVMEMLEPGWTVERQLKDGDIVLFNR 422
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ H+ S+ A + V D T ++NP +C P +ADFDGD ++L PQ+ A+AE L S
Sbjct: 423 QPSLHRMSIMAHRIVVMDGKTFRLNPAVCPPYNADFDGDEMNLHIPQTEEARAEAEILVS 482
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPLPRPALSKA 468
V+ +LS G + D + + ++ ++F + L LP P +
Sbjct: 483 VQANILSPRTGGPIIGGIHDHISGIFLLTHRMRHFRKEDVLYLTQHLDLDHLPEPDSVDS 542
Query: 469 RCSARWTALQILQSVLPPGFD------SC------------GDRYL-IKKSEVLKGDFDR 509
+ WT Q+ +LP + SC D Y+ I +++ G D+
Sbjct: 543 NGNLLWTNKQVFSLILPGELNMIFRASSCQNCETCRREMCENDAYVRIIDGQLVTGTIDK 602
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
I + +I+ I + G + F D + L + + GFS ++D L+K I
Sbjct: 603 KAIGAFDGQILHRIIRQYGMKRAARFIDDVTKLSIRGIMLQGFSFGIDDEDLTKTEYGQI 662
Query: 570 QKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVK----MLVAKFILK 612
+ + S + R+ T E +++QI + + + + +
Sbjct: 663 DEVLNGAVSDVERRIKIFKEGQLEPMPGRTLEETLEMQIMQVLGKARDRTGEIAGRHLGM 722
Query: 613 SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYP 672
++ + S + ++ + Q AG LG Q S RG+ + + HF R N
Sbjct: 723 DNSAVVMAVSGARGSMLNLTQMAGCLG-QQSVRGERIMRGYEDRTLPHFRR------NEL 775
Query: 673 TAK-YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
A+ +G I + GL P E H+I RE +V ++ S+ G L + ++ L+D+ + Y
Sbjct: 776 GAEAHGFIANSYKSGLSPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQDLKVAY 835
Query: 732 DGTVRNVCSNSIIQFDYAVN----ARKSHSLFPAGEPVGV 767
DGTVR IIQF Y + AR S+ G PV V
Sbjct: 836 DGTVRTT-GGRIIQFRYGEDGTDPARSSY-----GAPVDV 869
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 176/706 (24%), Positives = 312/706 (44%), Gaps = 80/706 (11%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDI 160
+ ++ + ++ + S V +LKRI +E + + + + +++ + P P I
Sbjct: 196 VTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSI 255
Query: 161 SDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVR 217
ST D L ++K E+ R ++G P E + LQ V Y+ E+
Sbjct: 256 MMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEA-TQFLQFHVATYVDNEIP 314
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + + L+ ++R + K FS+R+VIT D ++
Sbjct: 315 GLPQAQQR-------SGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSID 367
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGSK- 325
++GVP IA +T+ E V NI+ ++EL+ N + DG+ + LR K
Sbjct: 368 QVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIREDGTR-FDLRFVKKV 426
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
T L G V R I DGD V NR P+ HK S+ + V T ++N + P +AD
Sbjct: 427 SDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNAD 486
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQ+L +AEV+E+ V +Q++S + + + D LL ++ K+ F+
Sbjct: 487 FDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFM 546
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP---------------P 486
+K + M+ S +P PA+ K + WT Q+ ++P P
Sbjct: 547 EKDLVMNILMWLPSWDGKVPPPAILKPK--QLWTGKQLFSLIIPDINLIRFTSTHNDKEP 604
Query: 487 GFDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
S GD R +I++ E+L G + ++ + I+ + E G + F D Q ++
Sbjct: 605 NECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNH 664
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR-MSTQNELVDLQ-----IENHI 599
L GF++ + D A + + I + + + + QN+ + Q IE
Sbjct: 665 WLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFE 724
Query: 600 RHVKMLVAKF-----------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
+ V ++ K + + + L ++ + S + + Q +G Q + GK
Sbjct: 725 QKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVG-QQNVEGKR 783
Query: 648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F S+TL HF + +Y G ++ + GL P E H++ RE +
Sbjct: 784 IPFGFQSRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 833
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ SE G + + L+ + DV I YD TVRN + +IQF Y
Sbjct: 834 IDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYG 878
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 183/699 (26%), Positives = 304/699 (43%), Gaps = 87/699 (12%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVS 165
A R+LS +LKRI + + L F + D ILE LP+PP + + D S
Sbjct: 216 ADRVLS-------VLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATS 268
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R ++G P E + LQ + Y + R T
Sbjct: 269 RSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEF-TQLLQFHIATYFDNELPGQPRAT 327
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 328 QKSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 380
Query: 280 EIAQRITFEERVNVHNINYLQELV----DNKLCLTYSDGSSS--YSLREGSKGHTFLRPG 333
IA +T+ E V +NI L LV + DG S L++ S H L G
Sbjct: 381 SIALNLTYPETVTPYNIERLVRLVFISFSETKYIIRDDGQRSDLRYLKKSSDQH--LELG 438
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD +++
Sbjct: 439 YKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNM 498
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQL 452
PQS +AEVLEL V K ++S + + D LL + + K+ F++K
Sbjct: 499 HVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNT 558
Query: 453 AMFAL---SPLPRPALSKARCSARWTALQILQSVLP----------------PGFDSCGD 493
M+ +P PA+ K R WT Q+ ++P GF + GD
Sbjct: 559 LMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGD 616
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+ I++ E+L G + T+ + +V I+ E GP+ +F Q L+ L +GF
Sbjct: 617 TQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 676
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-QNELVDLQ--------IENHIRHV- 602
++ + D + + I + I + + + Q + +D + EN + V
Sbjct: 677 TIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVDQVL 736
Query: 603 -------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
K + +++ L ++ + S + + Q +G Q + GK F
Sbjct: 737 NKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPFGFDG 795
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 796 RTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 845
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 846 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 883
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P +G G KCE+C + +C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETC-MANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFGY+EL P+YH
Sbjct: 77 PGHFGYLELAKPMYH 91
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 230/867 (26%), Positives = 356/867 (41%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H H+ E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAAKRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG VV R + D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTD 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T QI+ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ S +IQ Y
Sbjct: 826 ALSDLRAEYDGTVRSLYS-EVIQVAYG 851
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 178/723 (24%), Positives = 307/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A + D +++ S V E+LK I +E L F +
Sbjct: 181 YQPS-IRRAGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFILGMDPKFARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I LPVPP + + G + DL+ + + E++R+ ++G + S+
Sbjct: 240 DWMICTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELMRNEQAGAAAHVISE 299
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 300 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 353 VDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 412
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD V NR PT HK S+ V V
Sbjct: 413 IVRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLP 472
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AE+ L +Q+++ + +
Sbjct: 473 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENLHITPRQIITPQANKPVMGIV 532
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K L MF +P+PA+ K + WT Q+ ++
Sbjct: 533 QDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPK--PLWTGKQLFSLII 590
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 591 PGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 650
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA----LYSL 579
F E G E +F+ ++Q ++ L +G S+ + D IQK I+ + +
Sbjct: 651 FLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYTEIQKAIKKAKEDVIEV 710
Query: 580 LY--HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
++ H M T + EN + + K + + + L ++ S S
Sbjct: 711 IHKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 770
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 771 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 824
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 825 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQL 883
Query: 747 DYA 749
Y
Sbjct: 884 RYG 886
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 177/725 (24%), Positives = 313/725 (43%), Gaps = 75/725 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS+ ++ + ++ +L+ S V E+ KRI +E L F +
Sbjct: 199 YQPSYRRTGIEITAEWKRRANDEQQEHKLVLSAERVLEIFKRIADEDCIVLGMDPRFARP 258
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I++ LPVPP + + G + DL+ + V ++ R+ R+G +
Sbjct: 259 DWMIIQELPVPPLAVRPAVATFGSARNQDDLTHKLSDIVNANNQLKRNERNGA----AAH 314
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
V ++DL+L QY S + P + K L+ ++R + K
Sbjct: 315 VIADDLKLL--QYHVATFIDNSVPGLPTATQKGGRPLKSLKQRLKGKEGRIRGNLMGKRV 372
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSS 316
FS+R+VIT D ++ +GVP IAQ +TF E V NI+ LQELV N+ Y +
Sbjct: 373 DFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDELQELV-NRGDAQYP--GA 429
Query: 317 SYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
Y +R + ++PG V R + DGD + NR PT HK S+ V +
Sbjct: 430 KYVIRSNGERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPTLHKMSMMGHKVKI 489
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQSL KAE+ E+ V +QL++ +
Sbjct: 490 LPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPRQLITPQANKPVMG 549
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQS 482
+ DAL ++ ++ K+ F++ A L M + +P+PA+ K + WT Q+
Sbjct: 550 IVQDALTAVYMLTKRDTFIEAARLMDLLMHMPDWNAKIPQPAILKPK--RLWTGKQLFSL 607
Query: 483 VLP------------PGFDSCGD---------RYLIKKSEVLKGDFDRDTIPSVINEIVT 521
++P P ++ G+ + L+++ +L G T+ ++
Sbjct: 608 IIPGEVNVELNHSTHPDDENAGEYKWISPGDTKVLVERGVLLSGIICSRTVGRSAGSLLH 667
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY---- 577
+ E G + +F+ +Q L A+G ++ + D +A +IQ+ I+
Sbjct: 668 VVTLELGFDVAAQFYSQIQTTANAWLLAEGQTIGIADAIADRATYSHIQETIKKAKMDVV 727
Query: 578 ---------SLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKS 624
S+ R +T + + +I N + + + +S + ++ + S
Sbjct: 728 EVIERARKDSIKVTRGNTLLQTFESKINNILNNARDRTGSSAQRSLSADNNFKAMVVAGS 787
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ + Q +G Q + GK HF R D P AK G ++ +
Sbjct: 788 KGSKINISQVIACVG-QQNVEGKRIPFGFRHRTLPHFIR----DDCGPEAK-GFVENSYL 841
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H++ RE ++ ++ +E G + + LM + +++ YDGTVRN ++
Sbjct: 842 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESIMVNYDGTVRNAL-GEVV 900
Query: 745 QFDYA 749
Q Y
Sbjct: 901 QLSYG 905
>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus G186AR]
Length = 1456
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 182/705 (25%), Positives = 298/705 (42%), Gaps = 114/705 (16%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLSLNPEEARPEV----------FLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNINLKNALIKGAPVQTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RVNE+ VP +A +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ + N T + ++Y L++ L+ G +V R I DGD
Sbjct: 417 KLRQRIRNG---TKTWPGANYVLKKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ + ++ L
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFITAAYLLSSKDIFYDRKTFTHICLYMLESDTRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP P++ K + WT Q+ ++ P S D +
Sbjct: 594 LPPPSVLKPQIL--WTGKQVFNVLMRPNKQSPVLINLDAACREFKAPKGTPRDLDANDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL----------------QIEN 597
+ + D ++ +K ++ + ++ H + +E++ L +EN
Sbjct: 712 IGITD-------VYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMEN 764
Query: 598 HIRHV---------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
I + ++ +A+ +S L + S S + V Q +G Q+ +
Sbjct: 765 AISGLLSKVRQQAGEICIAELSRWNSPL-IMATSGSKGSDINVAQMVALVGQQIIGNQRV 823
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF P P AK G ++ FF GL P E + H+IS RE +V
Sbjct: 824 QDGFQDRTL-----PHF----PKHARQPPAK-GFVRNSFFSGLTPTEFLFHAISGREGLV 873
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + LM L D+ YD TVRN SN I+QF Y
Sbjct: 874 DTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSN-IVQFQYG 917
>gi|171677863|ref|XP_001903882.1| hypothetical protein [Podospora anserina S mat+]
gi|170937000|emb|CAP61658.1| unnamed protein product [Podospora anserina S mat+]
Length = 1521
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 202/796 (25%), Positives = 327/796 (41%), Gaps = 108/796 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ YLP PP C+ P ++ ++ D++ + + V+ + +
Sbjct: 258 GLDPAEGRPEMFLWRYLPAPPLCIR-PSVAQESASNEDDITTKLAEIVIYSAHLREAMLK 316
Query: 192 GTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG-VSQDPNSTTKAWLEKMR 248
G P S + LQL VG Y+ +V G + FG V++ K + R
Sbjct: 317 GAP-LPSLMEQWEFLQLQVGMYVNSDVPGLVQQG------FGKVTRGFCQRLKGKQGRFR 369
Query: 249 TLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--- 305
K FS R+VI+ D + ++ VP +A+ +T+ ERV+ +NI L+ V N
Sbjct: 370 GNLSGKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPT 429
Query: 306 ----KLCLTYSDGSSSYS--LREGSKGHTF------LRPGQVVHRRIMDGDTVFINRPPT 353
L +T + G + L + K H LR G VV R + D D V NR P+
Sbjct: 430 EYPGALQITKNQGEENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDNDIVLFNRQPS 489
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 490 LHKLSIMSHYAKIRPWRTFRLNECVCSPYNADFDGDEMNLHVPQTEEARAEAINLMGVKN 549
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKA-----FTQQLAMFALSPLPRPALSK 467
L + NG + D + + ++ K F D++ TQ L LP PA+ K
Sbjct: 550 NLCTPKNGEPIIAATQDFITAAYLLSGKDRFYDRSSFTYICTQMLLGDTYLELPPPAILK 609
Query: 468 ARCSARWTALQILQSVL-------------------------PPGFDSCGDRYLIKKSEV 502
+ A WT QI ++ PP D +++ SEV
Sbjct: 610 PK--ALWTGKQIFNVMMRPNKESPVLVNLDAKNKVYNKGNLQPPDMDIDDSFLVVRNSEV 667
Query: 503 LKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-- 559
+ G D+ T+ N + I + G + + L L +L GFS+ + D
Sbjct: 668 ICGRMDKSTVGEGKKNSVFYVILRDYGADYAAATMNRLAKLCARSLTLRGFSIGVGDVFP 727
Query: 560 --SLSKAALWNIQKEIQALYSLLYHRMS---------TQNELVDLQIENHIRHVKMLVAK 608
+L++ L ++K + + E ++ ++ + V+
Sbjct: 728 SQALTEHKLMLLEKATTVCDGFISQAENGTLEKAPGCDMKETLETKLSGTLSAVRQAAGS 787
Query: 609 FILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+ + S LI +KS S S+ V Q +G Q+ GK + HFE+
Sbjct: 788 YCTENLSRNNAPLIMAKSGSKGSEINVAQMIACVGQQIIG-GKRVADGFQNRTLPHFEK- 845
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ A G +K F+ GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 846 ----GDKRAAAKGFVKNSFYTGLHPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 901
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV-----LAATAMSNPAYK 779
D+ YD TVR I+QF Y + + PV + T N + K
Sbjct: 902 EDLSTQYDDTVR-TSEGGIVQFQYGADRLDPVDMEGDARPVNFDRTWNHSQTITWNNSEK 960
Query: 780 AVLDSSPSSNNSWELMKEILLCRVSF--NNDPIDRRVILYLNDCGCGRKYCQERAAYMVK 837
+L S +L KE+L + + D + VI L D + +RAAYM
Sbjct: 961 GLLPSEIQ-----KLTKELLDRQRALYVRRDMLTGEVITGLTDEQI--RTSTDRAAYMA- 1012
Query: 838 NQLKRVSLKDAAVEFL 853
V DAA E+L
Sbjct: 1013 -----VDEHDAAREYL 1023
Score = 43.5 bits (101), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN---PFLGLPLEF-----------GKCESCG 61
++FG+ + ++I + + S + + N PF PL+ KC +C
Sbjct: 28 ALKFGIQSTQDILNQGVLEVSDNLLYDVENNRAPFKHGPLDPRLQGTSSPKPDAKCHTCH 87
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGVAQRLLSSCCE 116
G C GHFG+++LP+P++H ++ ++ T+ ++ + N+ + L S E
Sbjct: 88 QDLMG-CPGHFGHVKLPLPVFHIGYLKYIQATLQNICKSCSRILLTNEERRRFLRSLRRE 146
Query: 117 VKEM-----LKRIPEETRK 130
M LKRI E+ RK
Sbjct: 147 QDNMARTAVLKRINEQCRK 165
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 164/625 (26%), Positives = 269/625 (43%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R G+P E E LQ V Y++ + G ++ +
Sbjct: 196 DLTYKLGDIIRANGNVQRCDAEGSPAHVVNEFEQL-LQFHVATYMDNDIAGQPQALQK-- 252
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 253 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAK 307
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 308 TLTYPETVTPYNIQKLHQLVKNGPNDHPGAKYVLRDTGERIDLRHHKRAGEISLQYGWKV 367
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 368 ERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 427
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AEV +L V ++S + + D L + K+ + FL + + ++
Sbjct: 428 QSEETRAEVNQLCMVPLNVVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDQVMNILLW 487
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------FDSCGDRYLIKKSE 501
+P+PA+ K R A WT Q++ V+P G F D ++ E
Sbjct: 488 VPDWDGVIPQPAIIKPR--AMWTGKQLISLVVPTGLNLVRPGDHGFFPLEDDTLVVLGGE 545
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + + + I+ I+ EKG + + FF+ Q L+ L +GFS+ + D
Sbjct: 546 LMVGLLKKAYVGASPGGIIHIIYNEKGSDAAMSFFNGAQTLVNYWLLHNGFSIGIGDTIP 605
Query: 562 SKAALWNIQKEI--QALYSLLYHRMSTQNELVDL--------------QIENHIRHVKML 605
+ + IQ + Q +T+N+L L Q N R
Sbjct: 606 DRETILQIQNAVNNQKDEVTKITDEATRNQLESLPGMNVRETFESKVSQALNKARDEAGT 665
Query: 606 VAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
V + LK + + S S + + Q +G Q S GK HF +
Sbjct: 666 VTEKSLKDLNNATQMARSGSKGSTINISQMTAVVG-QQSVGGKRIPFGFKYRTLPHFTKD 724
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 725 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 779
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 780 EDVMCKYDGTVRNSLGD-IVQFVYG 803
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 157/629 (24%), Positives = 278/629 (44%), Gaps = 69/629 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADIIKANINVQRLEIDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP---LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + + W+ Q+L +P G FD D LI
Sbjct: 548 NMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSMAIPKGIHIQRFDGGRDLLSPKDTGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+ +
Sbjct: 608 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFWLLHNGFSIGIG 667
Query: 558 DFSLSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRH 601
D + + +I K IQ A + + Q+ +D + + N R
Sbjct: 668 DTIADASTMKDITKTIQEAKQKVQEIILDAQHNKLDPEPGMTLRESFEHNVSRVLNQARD 727
Query: 602 VKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ S S + + Q + +G Q+ + GK + H
Sbjct: 728 TAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSLPH 786
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 787 FTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 841
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN + IIQF Y
Sbjct: 842 VKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
Score = 46.6 bits (109), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ ++ A++ L +P LG KC++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLGSIDRNFKCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
Length = 1430
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 292/694 (42%), Gaps = 92/694 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP + P + ++ DL+ +
Sbjct: 253 ELLGLNPEEVRPEM----------FLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R G+ Q
Sbjct: 302 VQSNINLKNAINKGAPVQTIIECWDYMQLQIAVYINSDVPGLQKADFGKPIR-GICQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D R++E+ VP +A +T+ ERV +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L+E V N T ++Y + G+ FL+ G VV R + DGD
Sbjct: 417 KLRERVRNG---TKIWPGANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q + L P
Sbjct: 534 MELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------GDRY 495
LP PA+ K + WT Q+ ++ P +S C D +
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNVLMRPSKESPVLVNLDAACREFRAPKGTPRDLDPNDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENHIR 600
+ + D + L ++ ++ Y+ L + + ++ QI +
Sbjct: 712 IGITDVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILS 771
Query: 601 HVK-----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V+ +A+ +S L + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGEQCIAELSKWNSPL-IMATSGSKGSTINVAQMIALVGQQII-AGQRVQDGFQD 829
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P P AK G ++ FF GL P E H+IS RE ++ ++ +E G
Sbjct: 830 RTLPHF----PKYARQPPAK-GFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGY 884
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 885 MSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 176/723 (24%), Positives = 304/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ S V E+L+ I +E L F +
Sbjct: 180 YQP-NIRRSGLDLTAEWKHVNEDSQEKKISLSAERVWEILRHITDEECYILGMDATFARP 238
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + + E++R+ ++G + S+
Sbjct: 239 DWMIMTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVISE 298
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 299 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 351
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 352 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 411
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 412 IVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 471
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 472 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 531
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K L MF +P+PA+ K + WT Q+ ++
Sbjct: 532 QDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPK--PLWTGKQVFSLII 589
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 590 PGNVNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 649
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 650 MLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 709
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ S S
Sbjct: 710 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 769
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 770 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 823
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 824 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQL 882
Query: 747 DYA 749
Y
Sbjct: 883 RYG 885
>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1456
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 182/705 (25%), Positives = 298/705 (42%), Gaps = 114/705 (16%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLSLNPEEARPEV----------FLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNINLKNALIKGAPVQTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RVNE+ VP +A +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ + N T + ++Y L++ L+ G +V R I DGD
Sbjct: 417 KLRQRIRNG---TKTWPGANYVLKKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ + ++ L
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTLFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP P++ K + WT Q+ ++ P S D +
Sbjct: 594 LPPPSVLKPQIL--WTGKQVFNVLMRPNKQSPVLINLDAACREFKAPKGTPRDLDANDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL----------------QIEN 597
+ + D ++ +K ++ + ++ H + +E++ L +EN
Sbjct: 712 IGITD-------VYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMEN 764
Query: 598 HIRHV---------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
I + ++ +A+ +S L + S S + V Q +G Q+ +
Sbjct: 765 AISGLLSKVRQQAGEICIAELSRWNSPL-IMATSGSKGSDINVAQMVALVGQQIIGNQRV 823
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF P P AK G ++ FF GL P E + H+IS RE +V
Sbjct: 824 QDGFQDRTL-----PHF----PKHARQPPAK-GFVRNSFFSGLTPTEFLFHAISGREGLV 873
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + LM L D+ YD TVRN SN I+QF Y
Sbjct: 874 DTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSN-IVQFQYG 917
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 173/698 (24%), Positives = 298/698 (42%), Gaps = 79/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKR+ +E L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------ILKRVSDEDCLLLGLNPEYARPDWMILQALPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIISEF-AQLLQFHIATYFDNDLPGQPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S K+ ++R + K FS+R+VIT D ++++GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +R+ +
Sbjct: 298 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQH 357
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 358 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 417
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + D LL + + K+ F++K
Sbjct: 418 EMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDV 477
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD---------------- 489
+ M+ +P PA+ K R WT Q+ ++P +
Sbjct: 478 FMNILMWWEDFDGKVPAPAILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHNDSEKGPI 535
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I+K E+L G + T+ + ++ I+ E GP+ +F Q L+ L
Sbjct: 536 TPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 595
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI 599
+ FS+ + D + + I + I S + + E + EN +
Sbjct: 596 QNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEPGRTMMESFENRV 655
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 656 NQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPF 714
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
++ HF + +Y G ++ + GL P E H++ RE ++ ++ S
Sbjct: 715 GFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 769
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 770 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides
immitis RS]
Length = 1444
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 292/694 (42%), Gaps = 92/694 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP + P + ++ DL+ +
Sbjct: 253 ELLGLNPEEVRPEM----------FLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
V + + + G P E + LQ+AV +V G K+ R G+ Q
Sbjct: 302 VQSNINLKNAINKGAPVQTIIECWDYMQLQIAVYINSDVPGLQKADFGKPIR-GICQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D R++E+ VP +A +T+ ERV +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L+E V N T ++Y + G+ FL+ G VV R + DGD
Sbjct: 417 KLRERVRNG---TKIWPGANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ Q + L P
Sbjct: 534 MELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------GDRY 495
LP PA+ K + WT Q+ ++ P +S C D +
Sbjct: 594 LPPPAVLKPQML--WTGKQVFNVLMRPSKESPVLVNLDAACREFRAPKGTPRDLDPNDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENHIR 600
+ + D + L ++ ++ Y+ L + + ++ QI +
Sbjct: 712 IGITDVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILS 771
Query: 601 HVK-----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V+ +A+ +S L + S S + V Q +G Q+ G+ +
Sbjct: 772 KVRQQAGEQCIAELSKWNSPL-IMATSGSKGSTINVAQMIALVGQQII-AGQRVQDGFQD 829
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P P AK G ++ FF GL P E H+IS RE ++ ++ +E G
Sbjct: 830 RTLPHF----PKYARQPPAK-GFVRNSFFSGLIPSEFFFHAISGREGLIDTAVKTAETGY 884
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 885 MSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|322702468|gb|EFY94113.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1364
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 180/704 (25%), Positives = 290/704 (41%), Gaps = 99/704 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P DG +I +YLP PP C+ P I+ ++ DL+ + V I + +
Sbjct: 167 GLNPSDGRPEMFIWQYLPAPPVCIR-PSIAQDNASNEDDLTTKLADIVWVSGMIRSALQK 225
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ V Y L+ G K R + R Q
Sbjct: 226 GSP-IQTIMEQWEYLQTQVAIYINSDVPGLQQPGFGKPIRGICQRLKGKQG--------- 275
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++E+ VP +A+ +T+ ER NI L+ +
Sbjct: 276 -RFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPQLVAKNLTYPERAQRQNIEKLRRCIR 334
Query: 305 N--------KLCLTYSDGSSSYSLREGSKG--HTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N + L +G SL+ L G VV R I DGD V NR P+
Sbjct: 335 NGPNVWPGAQCVLKMREGGYKISLKFADTELIANKLCIGDVVERHIEDGDIVLFNRQPSL 394
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+
Sbjct: 395 HKLSIMSHFVKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAMSLMGVKHN 454
Query: 415 LLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L++ +G + D + + ++ +K F D+ + + L LP PA+
Sbjct: 455 LITPKSGEPIIAATQDFITAAYLLSYKDRFFDRKTFTTICIHMLDGGTQLDLPPPAIIVP 514
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ WT QI ++ P S C D +++ S+V+
Sbjct: 515 K--TLWTGKQIFNVLMRPNNRSPVMVNLDARCKSFVTRPGQCPDMDPNDGWLVVRNSQVM 572
Query: 504 KGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
G D+ T+ S + I I + GP+E + + L L L GFS+ + D +
Sbjct: 573 CGQMDKSTVGSGKKDSIFYVILRDYGPDEAVSAMNRLAKLCARYLTNRGFSIGVGDVYPT 632
Query: 563 KAALWNIQKEIQALYSLLYHRMST-----------------QNELVDLQIENHIRHVKML 605
+ ++KEI L S Y + + ++ I + V+
Sbjct: 633 AS----LRKEIDHLVSTAYKKCDNIIATFQAGSLEKAPGCDMEQTLENSISGVLSKVRQQ 688
Query: 606 VAKFILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+ + S LI +KS S S V Q +G Q+ G+ + HF
Sbjct: 689 AGEHCINTLSRHNAPLIMAKSGSKGSDINVAQMVSLVGQQIIG-GQRVPDGFQDRSLPHF 747
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ + P +K G +K F+ GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 748 HK----NARQPPSK-GFVKNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLM 802
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ + YD TVR N I+QF + + + AG PV
Sbjct: 803 KSLEDLSVKYDNTVRTSGGN-IVQFQFGADNLDPADMEGAGTPV 845
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 154/631 (24%), Positives = 277/631 (43%), Gaps = 75/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPFNIHRLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ Q +
Sbjct: 303 HVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE--LDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLI 497
M P +P PA+ K + WT Q+L +P G + LI
Sbjct: 361 NMLYWIPTWDGVIPPPAVMKPK--PLWTGKQLLSIAIPKGIHLQRLESSLLSPKDNGMLI 418
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ S ++ ++F EK P+ + F ++Q ++ L +GFS+ +
Sbjct: 419 VDGEIMFGVVDKKTVGSTGGGLIHTVFREKSPQVCAQLFSNIQKVVNFWLLHNGFSIGIG 478
Query: 558 DF------------------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHI 599
D S + + N Q++ + + R + +N + ++ N
Sbjct: 479 DTIADSETMKVVTTTIEEAKSKVQDIIMNAQRDKLEPEAGMTLRETFENNVS--RVLNQA 536
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 537 RDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRTL 595
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 596 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + I+QF Y
Sbjct: 651 RLVKALEDIMVHYDGTTRNSLGD-IVQFLYG 680
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Nasonia vitripennis]
Length = 1355
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 185/698 (26%), Positives = 299/698 (42%), Gaps = 75/698 (10%)
Query: 116 EVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EV +L+RIPE L + P+D IL +PVPP + +SD + + D
Sbjct: 194 EVIGLLERIPERDIPLLLMNPQCSVPRD-LILTRIPVPPISIRPSIVSDLKAGTNEDNLT 252
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
L ++L E I+ R ++ + LQL V Y+ E+ G S + A G
Sbjct: 253 MKLSEILLINEAIQIHRQRGLKIQNYTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRG 312
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
+ Q K + R K FSSR+VI+ D R+ ++GVP +A+ +T+ ERV
Sbjct: 313 LVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERV 368
Query: 292 NVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMD 342
N NI ++ LV N + LR G++ L+ G +V R + D
Sbjct: 369 NKCNIELMRRLVKNGPDVHPGANFIEIGKNKERRFLRYGNRQKMAQDLQYGDIVERHLHD 428
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ A V ++ T + N +C P +ADFDGD ++L PQ+ A+
Sbjct: 429 GDVVLFNRQPSLHKLSIMAHKAKVLENRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAR 488
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--- 458
AE L L + L++ NG L + D + ++ +K FL+K+ QL L+
Sbjct: 489 AEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDTFLNKSQVSQLISCLLAGED 548
Query: 459 -----PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY---------- 495
LP+PA+ K + WT QI +L P + G Y
Sbjct: 549 TTMQITLPKPAILKP--AIMWTGKQIFSVILRPNEKCPVKANLKTKGRAYTSNEELCIND 606
Query: 496 ---LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFD-SLQPLLMENLFADG 551
+I+ S++L G D+ T+ S + + I E+V L + L G
Sbjct: 607 SYVIIRNSQLLAGSMDKSTLGSGAKQNIFYILLRDWGEDVAALVMWRLARIASYFLMNRG 666
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRMSTQNELVDLQIENH 598
FS+ + D + + L Q+ + Y L ++ E ++ I
Sbjct: 667 FSIGIGDVTPGHSLLRAKQELLNNGYGKCTEYIRKMEAGKLPCQPGCSEEESLEAMILKE 726
Query: 599 IRHVKMLVAKFILK----SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ ++ K LK S++ + S S + + Q +G Q + G
Sbjct: 727 LSVIRDHAGKVCLKELHPSNSPLVMALSGSKGSFINISQMIACVG-QQAISGHRVPNGFE 785
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HFE+ + P AK G ++ F+ GL P E H++ RE +V ++ +E G
Sbjct: 786 DRALPHFEKYSKV----PAAK-GFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETG 840
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+ + L+ L D+ + YD TVRN + I+Q Y +A
Sbjct: 841 YMQRRLVKSLEDLCLHYDLTVRN-STGDIVQVLYGGDA 877
>gi|336121472|ref|YP_004576247.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
gi|334855993|gb|AEH06469.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
Length = 888
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 177/713 (24%), Positives = 298/713 (41%), Gaps = 91/713 (12%)
Query: 104 DGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPD 159
DG +QR ++S EV+E+L++IP+E L G P+ + +L LPVPP +
Sbjct: 171 DGKSQRQITSS-EVREILEKIPDEDCTLL---GINPEVARPEWMVLTVLPVPPVTVRPSI 226
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVR 217
+ DL+ ++ + + + G PN +++ + LQ + Y E
Sbjct: 227 TLESGERSEDDLTHKLVDIIRINQRLEENIEGGAPNLIIEDL-WDLLQYHINTYFDNEAP 285
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
GT + S P T L+ + R K FS+R+VI+ D +N
Sbjct: 286 GTPPARHR-------SGRPLRTIAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPCLSIN 338
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDN------------KLCLTYSDGSSSYSLR 321
E+GVP +IA+ +T E+V +NIN ++EL+ N K T ++
Sbjct: 339 EVGVPEKIAKELTVPEKVTRYNINKIRELLKNGSEKHPGVNYIIKKVKTRDGKEDELKIK 398
Query: 322 EGSKGHTF----LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPL 377
K + G +V R +M+GD V NR P+ H+ S+ A V V T + N
Sbjct: 399 ITDKNKEVWIEKIEEGMIVERHLMNGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLC 458
Query: 378 ICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKV 437
+C P +ADFDGD ++L PQ A+AE L VEK ++S G + D + +
Sbjct: 459 VCPPYNADFDGDEMNLHVPQLEEARAEAENLMLVEKHIVSPRYGGPIIGAIHDFISGAYI 518
Query: 438 MFKKYFLDKAFTQQLAMFALS-PLPRPALSKARCSARWTALQILQSVLPPGF-------- 488
+ YF + L L L P + K ++ + LP
Sbjct: 519 LTSSYFTKDEASIILRGSGLKDDLGEPDIVKDGVEL-YSGKNLFSRTLPHDLNLRYRAKI 577
Query: 489 ----DSCG------DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFD 537
D C D Y LIK +++KG D++ S I+ +I E G EE +F D
Sbjct: 578 CKKCDKCEEENCPYDAYVLIKNGKLIKGVIDKNGYGSEAGIILNTIVREFGSEEARKFLD 637
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ----------------ALYSLLY 581
+ + + L GF+ ++D + + A+ IQK + L L
Sbjct: 638 TSTKMSIRALMIKGFTTGIDDEDIPEEAIKEIQKSLDRAEEQVEEIIKQYEEGTLEPLPG 697
Query: 582 HRMSTQNELVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGL 640
+ E +QI R + +++ + + + + + ++ + AG +G
Sbjct: 698 RGLEESREAYIMQILGKARDEAGKIAERYLSEDNHAAVMARTGARGSLLNITMMAGCVGQ 757
Query: 641 QLSDRGKFY----SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
Q G+ + +TL HFE+ + +G ++ C+ GL P E H+
Sbjct: 758 QAVRGGRVFRGYRGRTL-----PHFEK-----GSLSAKSHGFVRSCYKKGLSPTEYFFHA 807
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ RE +V + ++ G + + L+ L+D+ YDGTVR+ I+QF Y
Sbjct: 808 MGGREGLVDQAVRTAQSGYMQRRLVNALQDLKAEYDGTVRD-SKGLIVQFAYG 859
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 177/750 (23%), Positives = 310/750 (41%), Gaps = 89/750 (11%)
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEM 120
G ++P K +GH G Y PS I L + A ++ ++ +++ S V E+
Sbjct: 161 GVADPSKKQGHGGCGH-----YQPS-IRRTGLDLMAEWKEVNDENQEKKMQVSAERVYEI 214
Query: 121 LKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
LK I +E L F + D I+ LPVPP + + G + DL+ + +
Sbjct: 215 LKHITDEECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDII 274
Query: 180 LKQVEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDA 228
E+ ++ ++G F + ND+ G ++ + K + + A
Sbjct: 275 KANNELKKNEQTGAAAHVIAENIKMLQFHVATLVDNDMP---GMPKAMQKSGKPLKAIKA 331
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
R K ++R + K FS+R+VIT D R++++GVP +AQ +TF
Sbjct: 332 RL----------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFP 381
Query: 289 ERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIM 341
E V NI+ +QELV D LR K L+ G V R +
Sbjct: 382 ELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLR 441
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
D D V NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+
Sbjct: 442 DDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMET 501
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-- 458
+AE+ + +Q+++ + + D L +++ M K+ F++K L MF +
Sbjct: 502 RAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPTWD 561
Query: 459 -PLPRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYL 496
+P+P + K + WT QI ++P + S GD + +
Sbjct: 562 GKMPQPCILKPK--PLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVM 619
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
++ E++ G + T+ + ++ +F E G E F+ ++Q ++ L +G S+ +
Sbjct: 620 VEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGI 679
Query: 557 EDFSLSKAALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV----- 602
D IQ+ I+ + H M T + EN + +
Sbjct: 680 GDTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 739
Query: 603 ---KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
K + + + L ++ S S + + Q +G Q + GK +
Sbjct: 740 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLP 798
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 799 HF-----IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRR 853
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ + V++ YDGTVRN +IQ Y
Sbjct: 854 LIKAMESVMVNYDGTVRNSVGQ-LIQLRYG 882
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 167/631 (26%), Positives = 274/631 (43%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R +P +++ E LQ V Y+ + R KS
Sbjct: 274 DLTYKLGDIIRANGNVRQAIREASPAHIARDFEQL-LQYHVATYMDNDIAGQPRALQKSG 332
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 333 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIAR 385
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L ELV N + +DG+ G L G V
Sbjct: 386 TLTYPETVTPYNIGKLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKV 445
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +M GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 446 ERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 505
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AE+ EL V ++S + + D L + K+ + FL K + ++
Sbjct: 506 QSEETRAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLW 565
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP--GFDSCGDR----------YLIKKS 500
+ +P PA+ R S RWT QI+ +P +S D LI+
Sbjct: 566 VPNWDGIIPVPAI--LRPSPRWTGKQIMSMAIPEIVSLNSLPDTKEDNSVKDEGLLIQSG 623
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + I + IV ++ E GPE ++F + +Q + L +GFS+ + D
Sbjct: 624 QLMYGLLTKKVIGAASGGIVHIVYNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGDTI 683
Query: 561 LSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIRHVKMLVAKFIL 611
+ +Q I Q + +T NEL + E+ + + A+
Sbjct: 684 PDTLTIEKVQGHIDEQKDEVARLTKQATNNELEPSPGMNIRETFESKVSRA-LNTARDKA 742
Query: 612 KSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
++T L D S S + + Q +G Q+ + + F +TL
Sbjct: 743 GTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL----- 797
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 798 PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV YDGTVRN + IIQF Y
Sbjct: 853 RLVKALEDVSAKYDGTVRNSLGD-IIQFLYG 882
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHA------------SQLANPFLGLPLEFGKCESCGTSE 64
I+FGL + ++I T S+ C + + S L +P LG KC++C T
Sbjct: 19 IQFGLMSPEQIKTMSV--CHVIYPETMDETRTKPRDSGLNDPLLGSIDRQFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL +YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKGVYHPGFIKKVK 102
>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
Length = 1390
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 214/804 (26%), Positives = 334/804 (41%), Gaps = 124/804 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN++++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 IARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP PA+ K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKP--VTL 594
Query: 474 WTALQILQSVLPP-------------GFDSCG--------DRYL-IKKSEVLKGDFDRDT 511
WT Q+ S+L P G CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQVFSSILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + ++ EP+ Y + + S
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCRSEPALS 941
Query: 788 SN----NSWELMK--EILLCRVSF 805
N S +MK E L CR SF
Sbjct: 942 KNELVLTSESIMKKNEFLCCRDSF 965
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 159/628 (25%), Positives = 279/628 (44%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 73 DLTYKLADILKANANVRRCDQEGAPAHVLNEFESL-LQFHVATYMDNDIAGQPQALQK-- 129
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 130 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGVPRSIAR 184
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 185 TLTYPEIVTPYNIHKLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEITLQYGWRV 244
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 245 ERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 304
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L ++ + K+ FL F Q + +
Sbjct: 305 QSEETRAELTQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDNFL--TFDQVMNVL 362
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDR-YLIK 498
P +P+PA+ K + WT Q+ +P G + S D +I+
Sbjct: 363 YWVPNWDGVIPQPAIQKPK--PLWTGKQMFSMAIPKGINLQRYDDKNTLLSVRDNGMMIE 420
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
EV+ G D+ T+ + ++ +I EKGP +F Q ++ L +GFS+ + D
Sbjct: 421 NGEVMFGIVDKKTVGATSGGLIHTIMREKGPIAARDFIGGTQTVVNYWLLHNGFSIGIGD 480
Query: 559 FSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIENHIRHVKML 605
+ NI I Q + +R+ T E + ++ + +
Sbjct: 481 TIADAKTMRNITNTIAQAKREVQQIILDAQANRLPPEPGMTLRESFEQKVSKVLNTARDT 540
Query: 606 VAK----FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+ + +++ + ++ + S + + Q + +G Q+ + GK HF
Sbjct: 541 AGRSAETSLTEANNVKQMVVAGSKGSFINISQMSACVGQQMVE-GKRVPFGFSYRTLPHF 599
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G I+ + GL P E H+++ RE I+ ++ +E G + + L+
Sbjct: 600 TKD-----DYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQRRLV 654
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV + YDGTVRN + I+QF Y
Sbjct: 655 KALEDVSVKYDGTVRNSLGD-ILQFVYG 681
>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
Length = 872
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/631 (24%), Positives = 277/631 (43%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDR-------Y 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NMLYWIPDWDGVIPPPAVIKPK--PMWTGKQLLSMAIPKGIHLQRFDGGKDMLSPKDTGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP + F +Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPYVCAQLFSRIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNELVD--------------LQIENHI 599
+ D + + ++ IQ + + + QN L ++ N
Sbjct: 479 IGDTIADASTMRDVTTTIQEAKDKVQEIILEAQQNTLEPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFSDRSL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + +IQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-VIQFVYG 682
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/634 (25%), Positives = 280/634 (44%), Gaps = 79/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANGNVQRCDQEGAPAHVINEFESL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V + ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRMNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M K+ F+D + Q + +
Sbjct: 306 QSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFID--YEQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P PA+ K + WT Q++ +P G FD + LI
Sbjct: 364 FWVPNWDGRIPPPAIWKPK--PMWTGKQMVSLCIPDGIFLQRFDDGNPLISPKDNGMLIS 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+ E++ G D+ T+ + ++ +I EKGP+ FF ++Q ++ L +GFS+ + D
Sbjct: 422 RGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVAAGFFGNIQKVVNYWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------IE 596
+ + +I I + Q+ + D Q +
Sbjct: 482 TIADGSTMRDIANTIAEA------KQKVQDIIADAQNNTLSPEPGMTLRESFEHNVSRVL 535
Query: 597 NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
N R A+ LK + + ++ S S + + Q +G Q+ + GK +
Sbjct: 536 NQARDNAGRSAELSLKDLNNVKQMVVSGSKGSFINISQMMACVGQQIVE-GKRIPFGFAD 594
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 595 RSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + +IQF Y
Sbjct: 650 IQRRLVKALEDIMVQYDGTTRNSLGD-VIQFIYG 682
>gi|225678717|gb|EEH17001.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
brasiliensis Pb03]
Length = 1449
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/553 (27%), Positives = 243/553 (43%), Gaps = 73/553 (13%)
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSS 317
FSSR+VI+ D R++E+ VP +A +T+ E+V +N L++ V N T + ++
Sbjct: 368 FSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNG---TKTWPGAN 424
Query: 318 YSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
Y L++ L+ G +V R I DGD V NR P+ HK S+ + V
Sbjct: 425 YVLKKSQNFKMNLKFGNPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVK 484
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD ++L PQ+ A+AE +EL V+ L++ NG +
Sbjct: 485 VRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGEPII 544
Query: 426 QLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQI 479
D + + ++ K F D+ + ++ L P LP P++ K + WT Q+
Sbjct: 545 SAIQDFITAAYMLSSKNVFYDRKTFTHVCLYMLLPGTRFDLPPPSILKPQ--MLWTGKQV 602
Query: 480 LQSVLPPGFDS------------------------CGDRYL-IKKSEVLKGDFDRDTIPS 514
++ P DS DR+L I+ SEV+ G D+ TI S
Sbjct: 603 FNILMRPNKDSPVLVNLDAACREFKAPKGTPRDLDANDRWLCIRNSEVMCGVMDKYTIGS 662
Query: 515 VINEIVTSIFF-EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-----------SLS 562
+ V + + GP E + L L + GFS+ + D L
Sbjct: 663 GKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPGDRLLEEKKELV 722
Query: 563 KAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFILKS----STL 616
+ A + IQ S + +E + ++ I + V+ + +T
Sbjct: 723 EHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILSKVRQQAGDLCISELSRWNTP 782
Query: 617 GYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY 676
+ S S + V Q +G Q+ G+ + HF P P AK
Sbjct: 783 LIMATSGSKGSNINVAQMVALVGQQIIG-GQRVQDGFQDRTLPHF----PKHARQPPAK- 836
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+ YDGTVR
Sbjct: 837 GFVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVR 896
Query: 737 NVCSNSIIQFDYA 749
N S+SI+QF Y
Sbjct: 897 N-SSSSIVQFQYG 908
>gi|297619552|ref|YP_003707657.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
gi|297378529|gb|ADI36684.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
Length = 888
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 174/705 (24%), Positives = 294/705 (41%), Gaps = 75/705 (10%)
Query: 104 DGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISD 162
DG A R L+S EV+E+L++IP K L + Y IL LPVPP + +
Sbjct: 171 DGKASRQLTSS-EVREILEKIPANDCKLLGINHIVARPEYMILTVLPVPPVTVRPSITLE 229
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA-K 221
DL+ ++ + + + G PN +++ + LQ + Y +
Sbjct: 230 SGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDL-WDLLQYHINTYFDNEAPGIP 288
Query: 222 SSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGV 277
+R R P T L+ F +G FS+R+VI+ D +NE+G+
Sbjct: 289 PARHRSGR------PLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGI 342
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDN------------KLCLTYSDGSSSYSLREGSK 325
P IA+ +T E+V HNI++++EL+ N K ++S+R K
Sbjct: 343 PELIAKELTVPEKVTAHNIDHIKELLKNGSEIHPGVNYVIKTIKNKEGKQENFSIRVSDK 402
Query: 326 GHTF----LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 381
+ G V R ++DGD V NR P+ H+ S+ A V V T + N +C P
Sbjct: 403 NKDHWAENIEEGMSVERHLIDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPP 462
Query: 382 LSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK 441
+ADFDGD +++ PQS A+AE L VEK ++S G + D + V+
Sbjct: 463 YNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSS 522
Query: 442 YF-LDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGF------------ 488
F D+A + + S L P + + ++ + + LP G
Sbjct: 523 NFNKDQALSLLRSAGFKSELGEPDVLE-NGEELYSGRSLFGTALPEGLSLEYKSKTCKKC 581
Query: 489 DSCGDR-------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
D C LIK ++LKG D++ S ++ +I E G E +F DS
Sbjct: 582 DDCKKENCEHEGYVLIKNGKLLKGVIDKNGFGSEAGIVLNTIVKEFGSEAARKFLDSATR 641
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQK----------------EIQALYSLLYHRMS 585
+ ++ + GF+ ++D + A+ IQ E L L +
Sbjct: 642 MSIKAMMIKGFTTGIDDEDIPVEAIEEIQNILNTAEDAVDAVVEKYETGTLDPLPGRGIE 701
Query: 586 TQNELVDLQIENHIRHVKMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
E +QI R VA +++ K + + + + ++ + A +G Q S
Sbjct: 702 ESREAYIMQILGRARDDTGAVAERYLSKDNHAALMARTGARGSLLNITMMAASVG-QQSV 760
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
RG + + HF + + +G ++ C+ GL P E H++ RE +V
Sbjct: 761 RGGRVFRGYRDRTLPHFGK-----GSLDAKSHGFVRSCYKKGLSPSEYFFHAMGGREGLV 815
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ G + + L+ L+D+ YDGTVR+ ++QF+Y
Sbjct: 816 DQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRD-SRGLVVQFEYG 859
>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1390
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 178/703 (25%), Positives = 302/703 (42%), Gaps = 87/703 (12%)
Query: 117 VKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
V+++L+RIP+E L + P+D +L ++PVPP C+ +S + + D
Sbjct: 223 VRDLLRRIPDEDVPLLLMNTRCGRPED-LVLTHIPVPPLCIRPSVVSALKAGTNEDDVTV 281
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ 234
L +++ ++++ R+ + + LQL Y+ + ++
Sbjct: 282 KLTEIIFLNDVLQKHRTNGGKMSMIMEDWDFLQLQCALYVNSETSG---------IPLNM 332
Query: 235 DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
P T+ ++++++ R K FS R+VI+ D R++E+GVP +A+ +T+
Sbjct: 333 QPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTY 392
Query: 288 EERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVH 337
ERV HNI +++L+ N G Y LR G++ LR G +V
Sbjct: 393 PERVTQHNIELMRQLIRNGCDVHPGANFLECRGTGIKRY-LRYGNREQLAQQLRLGDMVE 451
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R + DGD V NR P+ HK S+ A V T + N +C P +ADFDGD ++L PQ
Sbjct: 452 RHLKDGDVVLFNRQPSLHKLSIMAHVAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLPQ 511
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFA 456
+ A+AE L L L++ NG + D + ++ +K FLD+ QLA
Sbjct: 512 TEEARAEALILMGTRANLVTPRNGEPLIAAIQDFITGGYLITQKDVFLDRIKACQLASCM 571
Query: 457 LS--------PLPRPALSKARCSARWTALQILQSVLPP-------------------GFD 489
L+ LP PA+ K C WT QI ++ P G +
Sbjct: 572 LAGKDTNMKVELPPPAILKPVC--LWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGEE 629
Query: 490 SC-GDRY-LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
C D Y LI+ SE+L G D+ T+ S N I + + G + + L L
Sbjct: 630 MCVNDAYVLIRNSELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYY 689
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYS--------LLYHRMSTQN--------EL 590
+ GFS+ + D + + Q + A Y+ L ++ Q E
Sbjct: 690 IQNRGFSIGIGDVTPGAGLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEA 749
Query: 591 VDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
V L+ + +R H + + K+++ + S + + Q +G Q + G
Sbjct: 750 VCLKELSVVRDHAGKACLRELHKTNSPLIMAVCGSKGSFINISQMIACVG-QQAISGHRV 808
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ HFE+ P A+ G ++ F+ GL P E H++ RE +V ++
Sbjct: 809 PNGFEDRSLPHFEK----HDRSPQAR-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAVK 863
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+E G + + L+ L D+ YD +VRN C ++QF Y +
Sbjct: 864 TAETGYMQRRLVKSLEDLCCHYDRSVRNSCG-EVVQFCYGADG 905
>gi|448411893|ref|ZP_21576249.1| DNA-directed RNA polymerase subunit A' [Halosimplex carlsbadense
2-9-1]
gi|445669827|gb|ELZ22435.1| DNA-directed RNA polymerase subunit A' [Halosimplex carlsbadense
2-9-1]
Length = 1004
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 176/678 (25%), Positives = 294/678 (43%), Gaps = 63/678 (9%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDIS-DGVSTMSS 169
++++ + IP+E + L G P+ + IL LPVPP + P I+ D
Sbjct: 281 SDIRDWFEEIPDEDIEAL---GINPERSRPEWMILTVLPVPP-VTARPSITLDNGQRSED 336
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ ++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 337 DLTHKLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH--- 392
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ F SG FS+R+VI+ D +NE+GVP +A
Sbjct: 393 ----RSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAT 448
Query: 284 RITFEERVNVHNINYLQELVDN----KLCLTYSDGSSSYSLREGSKGHTFL----RPGQV 335
+T VN N+ Q V N Y L+ K L PG
Sbjct: 449 EMTQTMNVNERNLEEAQRYVSNGPEAHPGANYVRRHDGRRLKVTEKNCEELAEKVEPGWE 508
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R ++DGD V NR P+ H+ S+ A V V T ++N +C P +ADFDGD +++
Sbjct: 509 VSRHLIDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTTVCPPYNADFDGDEMNMHA 568
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLA 453
Q+ A+AE L V++Q+LS G + D + L F + L
Sbjct: 569 LQNEEARAEARVLMRVQEQMLSPRFGENIIGAIQDHITGTYLLTHTNPQFNETQALDLLR 628
Query: 454 MFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKKSEVLKGDFD 508
+ LP P + A WT + +LP + S GD +I+ ++L G D
Sbjct: 629 ATRIDELPAPD-GEEDGKAYWTGRTLFSELLPDDLNVEFTSSAGDEVVIEDGQLLSGTID 687
Query: 509 RDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWN 568
D + E+V +I E F + + L M ++ GFS+S++D S+ A
Sbjct: 688 EDAVGGFGGEVVDTIAKEYSKTRARIFVNEVSTLAMRSIMHFGFSISIDDESIPGEAEGQ 747
Query: 569 IQKEIQALYSLLYHRMST--QNELVDLQIENHIRHVKMLVAKFILKS-STLG-------- 617
I + I YS + + T EL L + ++M + + K+ T G
Sbjct: 748 IDEAIDDAYSRVQKLIETYEAGELESLPGRSVDETLEMKIMSTLSKARDTAGDIAEDHFG 807
Query: 618 ------YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNY 671
+ DS + ++ + Q AG +G Q RG+ ++ + SH++ P DL+
Sbjct: 808 DANPAVVMADSGARGSMLNLTQMAGCVGQQAV-RGERINRGYEDRTLSHYK---PNDLS- 862
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
+G ++ + GL+P E H++ RE +V ++ S+ G L + L+ L ++ Y
Sbjct: 863 -AEAHGFVEHSYRSGLEPREFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQY 921
Query: 732 DGTVRNVCSNSIIQFDYA 749
DGTVR+ S++I+QF++
Sbjct: 922 DGTVRD-TSDTIVQFEFG 938
>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
Length = 1483
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 179/682 (26%), Positives = 291/682 (42%), Gaps = 89/682 (13%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
GKG + YI Y+P PP C+ P + ++ DL++ + + V I + G
Sbjct: 249 GKGR--PETYIWRYMPAPPVCIR-PSVMQDSASNEDDLTVKLTEIVWTSAIIEAGLKQGM 305
Query: 194 PNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
E + LQLAV Y+ + D G Q + +A ++++ R
Sbjct: 306 AVASLME-QWELLQLAVAVYI----------NSDTPQGPGQSASKPIRALTQRLKGKQGR 354
Query: 254 -------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
K FS R+VI+ D R++++ VP +A+ +T+ ERV HNI L+ LV
Sbjct: 355 FRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITG 414
Query: 307 LC------LTYSDGSS-SYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKH 357
+ G S +LR G + L G VV R + DGD V NR P+ H+
Sbjct: 415 PSQHPGANYLFKKGESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQPSLHRL 474
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ A + T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+ L++
Sbjct: 475 SILAHFAQIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGVKHNLVT 534
Query: 418 SHNGNLNLQLATDALL-SLKVMFKKYFLD-KAFTQQLAMFALSPL----PRPALSKARCS 471
+G + D + S + K Y +D + F Q LAM + + P PA+ K
Sbjct: 535 PRSGEPIIAATQDFITGSFLISKKDYMIDRRTFCQLLAMMSDGDMQFDIPPPAIQKP--V 592
Query: 472 ARWTALQILQSVL----------------------PPGFD---SCGDRYL-IKKSEVLKG 505
WT Q+ ++ P G+ S D +L I+ S+V+ G
Sbjct: 593 QLWTGKQVFSLLIRPNKSSKVIINLDAKNKTFQPPPQGYPRDMSPNDGFLVIRNSQVMCG 652
Query: 506 DFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS---- 560
D+ T+ + + SI + GP+E + + L L GFS+ + D +
Sbjct: 653 AMDKATLGDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGISDVTPGAE 712
Query: 561 -------LSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL 611
L + A + I+AL L T + ++ +I + V+ V + +
Sbjct: 713 LSSTKEILVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSKVREEVGEVCI 772
Query: 612 ----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
KS+ + S + V Q +G Q+ GK + HF +
Sbjct: 773 KELEKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIIS-GKRVPNGFQDRSLPHFRKFSVT 831
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P +K G ++ F+ GLDP E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 832 ----PPSK-GFVRNSFYSGLDPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 886
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
YD TVR SN ++QF Y
Sbjct: 887 SARYDSTVRT-SSNGVVQFRYG 907
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/561 (26%), Positives = 255/561 (45%), Gaps = 82/561 (14%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VIT D +++++GVP +IA +T E V NI+ +++L++
Sbjct: 236 RLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNENIDEMRKLIER 295
Query: 306 --------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
K + + D S + ++ + PG V R + D D V NR P+ HK
Sbjct: 296 GPNIWPGAKYIIRHDDRQIDLS-QMRNRSEATIHPGFKVERHLRDNDYVIFNRQPSLHKM 354
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
SL V V T ++N + P +ADFDGD +++ PQS AE+ E+ +V Q++S
Sbjct: 355 SLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVPNQIVS 414
Query: 418 SHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSAR 473
+ + + D+LL + + K F++K QL M+A P P + K R
Sbjct: 415 PQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAKYEDDKFPMPTILKPR--PL 472
Query: 474 WTALQILQSVLPP------------GFDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
WT QI ++P +DS GD LI+K E++ G+ + TI S ++
Sbjct: 473 WTGKQIFSLIIPDINLQKVGEKKGLIWDSAGDLNILIRKGELICGNLTKGTIGSSSGGMI 532
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
I+ EKGP +F + Q ++ L +GF+V ++D K + I+ +
Sbjct: 533 HIIWKEKGPYCCRDFLSNTQLIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSMTKF---- 588
Query: 581 YHRMSTQNELVDLQIENHIRHVKMLVAKFILKS--------------------------- 613
+ ++ +Q + + +K K +++S
Sbjct: 589 ------KRDVTKIQQKAQLGKLKSQPGKSMMESFEASVNQCLNKARDDCGNMALADLSSW 642
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMD 668
+ L ++ + S + + Q +G Q + GK FY ++L HF + D
Sbjct: 643 NRLKAMVYAGSKGSNLNISQIMACVG-QQNVEGKRIPFGFYKRSL-----PHFSK----D 692
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
P +K G ++ C+ +GL P E H++ RE ++ ++ +E G + + L+ L DV+
Sbjct: 693 DFGPESK-GFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVM 751
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVR IIQF Y
Sbjct: 752 VKYDGTVR-TSKEQIIQFLYG 771
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 183/725 (25%), Positives = 314/725 (43%), Gaps = 108/725 (14%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPN 153
Q Q+ + V ++ + V +LKRI +E + L G+ PQ D IL+ LP+PP
Sbjct: 120 QDQLMPEPVERKQQLTAERVLNILKRISDEECQML---GFDPQFARPDWMILQVLPIPPP 176
Query: 154 CLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQY 213
+ + + S DL+ + + + + ++G P E + LQ V Y
Sbjct: 177 PVRPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAHIVTEF-AQLLQFHVATY 235
Query: 214 L------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
+ R T +S R + + S KA ++R + K FS+R+VIT D
Sbjct: 236 FDNELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPD 288
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD--------------------NKL 307
++++GVP+ IA +T+ E V +NI L+ELV+ +L
Sbjct: 289 PNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 348
Query: 308 CLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
L Y SS + L G K V R + DGD V NR P+ HK S+ + +
Sbjct: 349 DLRYLKRSSDHHLELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 398
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N + P +ADFDGD +++ PQS +AE+LEL V K ++S + + +
Sbjct: 399 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEILELMMVPKCIVSPQSNRPVMGI 458
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSV 483
D LL + + K+ F++K + M+ +P PA+ K R WT Q+ +
Sbjct: 459 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPR--PIWTGKQVFNLI 516
Query: 484 LPP----------------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFE 526
+P G + GD + I+K EV+ G + T+ + ++ I+ E
Sbjct: 517 IPKQINLVRYSAWHNESDRGHLTLGDTVVRIEKGEVITGTLCKKTLGASSGSLIHVIWEE 576
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ--------ALYS 578
GP+ +F Q L+ L GFS+ + D + I + IQ +
Sbjct: 577 VGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADATTMDTINETIQDAKIKVQELIEK 636
Query: 579 LLYHRMSTQNELVDLQ-IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVS 629
+ H++ + L+ EN + V + + +S+ L ++ + S +
Sbjct: 637 YMAHKLEQEPGRTLLESFENQVNQVLNKARDDAGNSAQRSLSESNNLKAMVTAGSKGSFI 696
Query: 630 KVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+ Q +G Q + GK F +TL HF + D P ++ G ++ +
Sbjct: 697 NISQMTACVG-QQNVEGKRIPYGFQGRTL-----PHFVK----DDKGPESR-GFVENSYL 745
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H++ RE ++ ++ SE G + + L+ + D+++ YD TVRN + +I
Sbjct: 746 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDATVRNSLGD-VI 804
Query: 745 QFDYA 749
QF Y
Sbjct: 805 QFLYG 809
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 181/697 (25%), Positives = 298/697 (42%), Gaps = 95/697 (13%)
Query: 117 VKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPN----CLSVPDISDGVSTMSSDL 171
V + K I ++ K+ K Y + ++ L VPP +SV + G DL
Sbjct: 237 VLNIFKHITDDEITKMGLNKDYARPEWMVITVLAVPPPPVRPSISVDGMGGGGMRGEDDL 296
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVES-----------NDLQLAVGQYLEVRGTA 220
+ + + + R + G+P E ES ND+ GQ V+ +
Sbjct: 297 TFKLGDIIKANNNLQRCEQEGSPAHVVNEFESLLQFHVATFMDNDI---AGQPQAVQKSG 353
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VITGD ++E+GVP
Sbjct: 354 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 403
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
A+ +T+ E V +NI L LV N D LR + G L+ G
Sbjct: 404 TARILTYPETVTPYNIKKLSALVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEIALQYG 463
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R I+DGD V NR P+ HK S+ V V T ++N + P +ADFDGD +++
Sbjct: 464 WKVERHIVDGDFVIFNRQPSLHKESMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNM 523
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQL 452
PQS +AEV +L V Q++S + + D L + K+ + FLD+ Q +
Sbjct: 524 HVPQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKLCRRDVFLDR--DQLM 581
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD----------SCGDRYL- 496
+ P P PA+ K S RWT Q++ V+P G + D L
Sbjct: 582 NVLLWVPEWDGTFPPPAIVKP--SPRWTGKQLISMVIPKGINLVKPDKEGMSPLADTGLC 639
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
+ E++ G F + ++ + ++ +I+ EKG + + FF+ Q ++ L +GFS+ +
Sbjct: 640 VTDGELMFGLFSKKSVGASQGGMIHTIYNEKGWQTCMGFFNGTQRVVNYWLLHNGFSIGI 699
Query: 557 EDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIEN--------HIRHV------ 602
D ++ AA IQ + ++ R + +E+ +N +IR
Sbjct: 700 GD-TIPDAAT------IQKIQDIVTQRKAEVDEVTKQAQDNVLEALPGMNIRETFENKVS 752
Query: 603 -KMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ +A+ S+T L D S S + + Q + +G Q S GK
Sbjct: 753 RSLNLARDDAGSATEKSLKDLNNAIQMARSGSKGSNINISQMSAVVG-QQSVEGKRIPFG 811
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 812 FKYRTLPHFTKD-----DYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 866
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L DV+ YDGTVRN + IIQF Y
Sbjct: 867 TGYIQRRLVKALEDVMCKYDGTVRNSLGD-IIQFCYG 902
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 167/631 (26%), Positives = 274/631 (43%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R +P +++ E LQ V Y+ + R KS
Sbjct: 274 DLTYKLGDIIRANGNVRQAIREASPAHIARDFEQL-LQYHVATYMDNDIAGQPRALQKSG 332
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 333 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIAR 385
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L ELV N + +DG+ G L G V
Sbjct: 386 TLTYPETVTPYNIGKLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKV 445
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +M GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 446 ERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 505
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AE+ EL V ++S + + D L + K+ + FL K + ++
Sbjct: 506 QSEETRAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLW 565
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPP--GFDSCGDR----------YLIKKS 500
+ +P PA+ R S RWT QI+ +P +S D LI+
Sbjct: 566 VPNWDGIIPVPAI--LRPSPRWTGKQIMSMAIPEIVSLNSLPDTKEDNSVKDEGLLIQSG 623
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
+++ G + I + IV ++ E GPE ++F + +Q + L +GFS+ + D
Sbjct: 624 QLMYGLLTKKVIGAASGGIVHIVYNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGDTI 683
Query: 561 LSKAALWNIQKEI--QALYSLLYHRMSTQNEL-------VDLQIENHIRHVKMLVAKFIL 611
+ +Q I Q + +T NEL + E+ + + A+
Sbjct: 684 PDTLTIEKVQGHIDEQKDEVARLTKQATNNELEPSPGMNIRETFESKVSRA-LNTARDKA 742
Query: 612 KSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
++T L D S S + + Q +G Q+ + + F +TL
Sbjct: 743 GTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL----- 797
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 798 PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 852
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV YDGTVRN + IIQF Y
Sbjct: 853 RLVKALEDVSAKYDGTVRNSLGD-IIQFLYG 882
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHA------------SQLANPFLGLPLEFGKCESCGTSE 64
I+FGL + ++I T S+ C + + S L +P LG KC++C T
Sbjct: 19 IQFGLMSPEQIKTMSV--CHVIYPETMDETRTKPRDSGLNDPLLGSIDRQFKCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL +YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKGVYHPGFIKKVK 102
>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
Length = 1389
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 90/703 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVS-TMSSD 170
EV +L+RIP+E + L P+ G+ IL +PVPP C+ +SD S T D
Sbjct: 225 EVLHLLERIPDEHIQFLLMN---PEHGHPKDMILTRVPVPPVCIRPSVVSDFKSGTNEDD 281
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEV--ESNDLQLAVGQYL--EVRGTAKSSRDV 226
L++ + + V I++ G SQ++ + + LQL Y+ ++ G +
Sbjct: 282 LTMKLTEIVFLNGVIVKHRLLGV---TSQKILEDWDFLQLQCALYINSQLSGIPLCMQPK 338
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
G+ Q K + R K FS R+VI+ D R++++GVP IA+ +T
Sbjct: 339 KKSRGLVQ----RLKGKQGRFRGNLSGKRVNFSGRTVISPDPNLRIDQVGVPELIAKLLT 394
Query: 287 FEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVH 337
+ VN NI +++LV N + L D + SL+ G++ L+ G ++
Sbjct: 395 YPTLVNEANIELMRKLVRNGPDIHPGAIFLKEKDSKLTRSLKYGNRETLARNLKRGDLIE 454
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R +MD D V NR P+ HK S+ + T ++N +C P +ADFDGD ++L PQ
Sbjct: 455 RHMMDEDIVLFNRQPSLHKLSIMCHRAKILPHLTFRLNECVCTPYNADFDGDEMNLHLPQ 514
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFA 456
+ A+AE L L + L++ NG L + D + ++ K F D+A T Q+
Sbjct: 515 TEEARAEALILMGNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASM 574
Query: 457 LS--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY----- 495
L+ LP P + K +A W+ QI +L P + G Y
Sbjct: 575 LAGDEVNMVIKLPPPCIQKP--AAMWSGKQIFSLILRPNPGNPIKVNLRTKGKEYSKKNE 632
Query: 496 ---------LIKKSEVLKGDFDRDTI--PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
L++ SEVL G D+ TI S IN I + + G + ++ L +
Sbjct: 633 EFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKIN-IFYVLLRDYGEDFAIQAMWKLCRVAS 691
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL-------VDLQI 595
+ GFS+ + D + K L QK + + YS Y R+ T +L V+ +
Sbjct: 692 YYMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGYSKCDEYIRLLTIGQLPCLPGCNVEESL 751
Query: 596 ENH-------IRHVKMLVAKFILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRG 646
E+ IR V K L S L+ SKS S S + Q +G Q + G
Sbjct: 752 ESKILKELSGIRDQAGEVCKKELHPSN-SPLVMSKSGSKGSYINISQMIACVGQQALN-G 809
Query: 647 KFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
K + HF+R P AK G + F+ GL P E H++ RE +V +
Sbjct: 810 KRVPNGFEDRSLPHFKR----HSKIPAAK-GFVSNSFYSGLTPTEFFFHTMGGREGLVDT 864
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ G + + L+ L D+ YD TVRN + IIQF Y
Sbjct: 865 AVKTADTGYMQRRLIKSLEDLCCQYDSTVRN-SAGEIIQFVYG 906
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 182/704 (25%), Positives = 303/704 (43%), Gaps = 107/704 (15%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
+ LQL+V Y+ S + G P L+ + F SG
Sbjct: 314 EHWDYLQLSVAMYINSDSVNPSMMPGASSGGAKAKPIRGFCQRLKGKQGRFRGNLSGKRV 373
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCL 309
FS R+VI+ D ++E+ VP +A+ +T+ E+V +N LQ LV N +
Sbjct: 374 DFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPGANYI 433
Query: 310 TYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
++ + +LR G K LR G +V R + DGD V NR P+ H+ S+ + +
Sbjct: 434 LKANEEARRNLRYGDRLKIAKQLRVGDIVERHLEDGDIVLFNRQPSLHRLSILSHFAKIR 493
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G +
Sbjct: 494 PWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEPIIAA 553
Query: 428 ATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTALQILQ 481
D + S + K FLD+A FTQ L+M + S L P P + K C WT Q+
Sbjct: 554 TQDFITGSYLISHKDTFLDRATFTQLLSMMSDSNLQFDIPPPTIIKPYC--LWTGKQLFS 611
Query: 482 SVLPPGFDSC--------------------------GDRYL-IKKSEVLKGDFDRDTI-P 513
++ P DS D ++ I+ S++L G D+ +
Sbjct: 612 LLIKPNKDSPVVINLDAKNKVFIPPKSKSLPNEMSQNDGFVVIRGSQILSGVMDKSVLGD 671
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ + +I + GP+E + + L L GFS+ + D + A ++++
Sbjct: 672 GKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGISDVTPDNA----LKQKK 727
Query: 574 QALYSLLYHRMSTQNELVDL----QIENH----------------------------IRH 601
+ L + Y + +EL+DL ++E I
Sbjct: 728 EELVEIAYAKC---DELIDLFTKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDICINE 784
Query: 602 VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+ L A I+ +T G + + S + VV Q G ++ D F ++L HF
Sbjct: 785 LDNLNAPLIM--ATCGSKGSNLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF 835
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 836 RK----NSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLM 890
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR SN I+QF Y + + +PV
Sbjct: 891 KSLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPLEMEGNAQPV 933
>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
Length = 870
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/635 (24%), Positives = 280/635 (44%), Gaps = 83/635 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + + G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTYKLADILKANINVQKLEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPETVTPYNIQKLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-----GDRYLI 497
M P +P+PA+ K + W+ Q+L + +P G FD LI
Sbjct: 361 NMLFWIPQWDGVIPQPAILKPK--PLWSGKQLLSTCIPKGIYLQRFDGSLLSPKDSGMLI 418
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G ++ T+ + ++ ++ EKGP+ + F ++Q ++ L +GFS+ +
Sbjct: 419 VNGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQLFGNIQKVVNYWLLHNGFSIGIG 478
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D + + I + I + QN ++D Q +
Sbjct: 479 DAIADRETMRVITETIGEA------KEKVQNIILDAQRNLLEPEPGMTVRESFEQKVSKV 532
Query: 596 ENHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK S+ + ++ + S + + Q + +G Q+ + GK S
Sbjct: 533 LNEARDSAGKSAELSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRISFGFA 591
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 592 DRSLPHFTKD-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 646
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + +IQF Y
Sbjct: 647 YIQRRLLKALEDIMVHYDGTARNSLGD-VIQFLYG 680
>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
Length = 880
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 222/867 (25%), Positives = 358/867 (41%), Gaps = 157/867 (18%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I G++FG+ + EI S++ S + +P LG+ +C +CG
Sbjct: 3 EKIIKGVKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGSVMDPRLGVIEPGQRCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIP------------------------------------IYH-- 83
G C GHFG+IEL P IYH
Sbjct: 63 NMM-GNCPGHFGHIELVKPVIHVGFVKHIYDLLRATCRRCGRIKLEDQELERYRRIYHAI 121
Query: 84 ----PSHISEL-----KLTMYA--------FQLQIK-----------NDGVAQRLLSSCC 115
PS L K +M A QL+IK +GV RL +
Sbjct: 122 NKRWPSAAKRLVEHIKKSSMKAPVCPHCGEKQLKIKLEKPYNFYEERKEGVV-RL--TPV 178
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
++++ L+RIP++ + L GY P+ + IL LPVPP + + + DL
Sbjct: 179 DIRDRLERIPDDDVELL---GYDPKTSRPEWMILTVLPVPPITIRPSIMIENGIRAEDDL 235
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ ++ V + S +G P +++ + LQ V Y E+ G S
Sbjct: 236 THKLVDIVRINERLKESIDAGAPQLIVEDL-WDLLQYHVATYFDNEIPGLPTSKHR---- 290
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FSSR+VI+ D ++E+GVP +IA+ +
Sbjct: 291 ---SGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPIDIAKIL 347
Query: 286 TFEERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTF---LRPGQV 335
T ERV NI ++E V N + DG LR F L PG +
Sbjct: 348 TVPERVTKWNIERMREYVLNGPDKWPGANYVIKPDGRR-IDLRYVKDRKEFASTLAPGFI 406
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R ++DGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L
Sbjct: 407 VERHLIDGDIVIFNRQPSLHRISMMAHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHV 466
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMF 455
PQS A AE EL +V K +L+ G + A D +S + + +
Sbjct: 467 PQSEEAIAEAKELMTVHKNILTPRYGGPIMGSAQD-YISGAYLLTVKTTLLTEDEVQTIL 525
Query: 456 ALSPLPRPALSKARCSAR--WTALQILQSVLPPGFDSCG------------------DRY 495
++ + + A + + +T Q++ LP F+ G D Y
Sbjct: 526 GVANISKDIGEPAILAPKRLYTGKQVVSLFLPEDFNYHGQANIASGPRLCTDEDCPHDSY 585
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV-LEFFDSLQPLLMENLFADGFS 553
+ IK ++L+G FD+ + + E + + PE+ L D++ + + + G +
Sbjct: 586 IVIKNGKLLEGVFDKKALGNQQPESILHWLIREYPEDYGLWLMDNIFKVFIRYIEIHGLT 645
Query: 554 VSLEDFSLSKAALWNI-------QKEIQALYS---------LLYHRMSTQNELVDLQIEN 597
+S++D ++S+ A+ I K++Q L + + + E L +
Sbjct: 646 MSIDDVTISQEAMAKIAEKAKQADKQVQELIAKYEKGELEQIPGRTLEESLESYILDTLD 705
Query: 598 HIRHVKMLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
+R+ +A L Y++ + + +V + Q A LG Q S RG+ S+ E
Sbjct: 706 KLRNDAGEIAAADLDPFNNVYIMARTGARGSVLNITQMAAMLG-QQSVRGERISRGYYER 764
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF+R D++ G I F GL+P E H+ + RE +V ++ S+ G +
Sbjct: 765 ALPHFKR---NDIS--AEARGFIYSSFRSGLNPIELFFHAAAGREGLVDTAVRTSQSGYM 819
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSI 743
+ L+ L D+ I YDGTVR + I
Sbjct: 820 QRRLINALSDLRIEYDGTVRTLYGEVI 846
>gi|154270754|ref|XP_001536231.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
gi|150409805|gb|EDN05245.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1439
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 182/705 (25%), Positives = 298/705 (42%), Gaps = 114/705 (16%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLSLNPEEARPEV----------FLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNINLKNALIKGAPVQTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS R+VI+ D RVNE+ VP +A +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ + N T + ++Y L++ L+ G +V R I DGD
Sbjct: 417 KLRQRIRNG---TKTWPGANYVLKKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP----- 459
+EL V+ L + NG + D + + ++ K F D+ + ++ L
Sbjct: 534 MELMGVKHNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTRFD 593
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDS------------------------CGDRY 495
LP P++ K + WT Q+ ++ P S D +
Sbjct: 594 LPPPSVLKPQIL--WTGKQVFNVLMRPNKQSPVLINLDAACREFKAPKGTPRDLDANDGW 651
Query: 496 L-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFS 553
L I+ SE++ G D+ TI S + V + GP+ E + L L L GFS
Sbjct: 652 LCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFS 711
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL----------------QIEN 597
+ + D ++ +K ++ + ++ H + +E++ L +EN
Sbjct: 712 IGITD-------VYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMEN 764
Query: 598 HIRHV---------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK- 647
I + ++ +A+ +S L + S S + V Q +G Q+ +
Sbjct: 765 AISGLLSKVRQQAGEICIAELSRWNSPL-IMATSGSKGSDINVAQMVALVGQQIIGNQRV 823
Query: 648 ---FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
F +TL HF P P AK G ++ FF GL P E + H+IS RE +V
Sbjct: 824 QDGFQDRTL-----PHF----PKYARQPPAK-GFVRNSFFSGLTPTEFLFHAISGREGLV 873
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + LM L D+ YD TVRN SN I+QF Y
Sbjct: 874 DTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSN-IVQFQYG 917
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/560 (25%), Positives = 248/560 (44%), Gaps = 57/560 (10%)
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
S KA ++R + K FS+R+VIT D ++E+GVP+ IA +T+ E V +NI
Sbjct: 14 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 73
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVF 347
L+ELV+ + Y +R+ + L G V R + DGD V
Sbjct: 74 RLKELVEYGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDMHLELGYKVERHLNDGDFVL 133
Query: 348 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLE 407
NR P+ HK S+ + + T ++N + P +ADFDGD +++ PQS +AEVLE
Sbjct: 134 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 193
Query: 408 LFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRP 463
L V K ++S + + D LL + + K+ F++K + M+ +P P
Sbjct: 194 LMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP 253
Query: 464 ALSKARCSARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSEVLKGD 506
+ K R WT Q+ ++P GF + GD + I+K E+L G
Sbjct: 254 VILKPR--PLWTGKQVFNLIIPKQINLLRYSAWHQEKEKGFITPGDTQVRIEKGELLTGT 311
Query: 507 FDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL 566
+ T+ + ++ I+ E GP+ +F Q L+ L + FS+ + D A +
Sbjct: 312 LCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATM 371
Query: 567 WNIQKEIQALYSLLYH--RMSTQNEL-------VDLQIENHIRHV--------KMLVAKF 609
I + IQ + + R + + +L + EN + V K
Sbjct: 372 EKINETIQNAKNEVKELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKS 431
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
+ + + L ++ + S + + Q +G Q + GK ++ HF +
Sbjct: 432 LSEHNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD----- 485
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++
Sbjct: 486 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 545
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YDGTVRN + +IQF Y
Sbjct: 546 KYDGTVRNSLGD-VIQFLYG 564
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 170/660 (25%), Positives = 287/660 (43%), Gaps = 74/660 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +++ E LQ V Y+ + R KS
Sbjct: 273 DLTYKLGDIIRANGNVKQAIREGSPAHIARDFEEL-LQYHVATYMDNDIAGQPRALQKSG 331
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 332 RPVKAI-------RARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIAR 384
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L + V+N + +DG G L G V
Sbjct: 385 TLTYPETVTPYNIGRLHQYVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKV 444
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 445 ERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 504
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFA 456
QS +AEV EL V ++S + + D+L + + ++ D T++ M +
Sbjct: 505 QSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGVYKLCRR---DTFLTKEQIMNS 561
Query: 457 L-------SPLPRPALSKARCSARWTALQILQSVLPP------GFDSCGDR------YLI 497
+ +P+PA+ K R RWT Q++ V+P G D D LI
Sbjct: 562 MLWVPNWDGVIPQPAILKPR--PRWTGKQLISMVIPKEVTLHNGTDKKEDAPLKDEGILI 619
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ +++ G + + + IV + E G E + F + +Q ++ L +G S+ +
Sbjct: 620 QAGQLMYGLPTKKIVGAAAGGIVHISYNELGAEGAMAFLNGVQQVVTYWLLNNGHSIGIG 679
Query: 558 DFSLSKAALWNIQKEIQALYSLLYH--RMSTQNEL-------VDLQIENHIR-------- 600
D KA + +Q I + + M+T NEL V EN +
Sbjct: 680 DTIPDKATIEKVQVHIDEEKAEVARLTAMATANELEALPGMNVRATFENKVSMALNQARD 739
Query: 601 HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + S+ + S S + + Q +G Q+ + GK H
Sbjct: 740 KAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQQIVE-GKRIPFGFKYRTLPH 798
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 799 FTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 853
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA 780
+ L D+ YDGTVRN + ++QF Y + + + + +G+L MSN A+KA
Sbjct: 854 VKALEDLSARYDGTVRNSLGD-VVQFLYGEDGLDAMCI--EKQKLGIL---NMSNAAFKA 907
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG +C++C T
Sbjct: 19 IQFGLMSPEEIKNMSV--CHILYPETMEENKTKPRDGGLNDPLLGSIDRQFRCKTC-TQA 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL P+YHP I ++K
Sbjct: 76 MGECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 178/724 (24%), Positives = 301/724 (41%), Gaps = 74/724 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ S V E+LK I +E L F +
Sbjct: 158 YQP-NIRRAGLDLTAEWKHVNEDSQEKKINLSAERVWEILKHITDEECFILGMDPKFARP 216
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I+ LPVPP + + G + DL+ + + E++R+ ++G E
Sbjct: 217 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELVRNEQAGAAAHVIAE 276
Query: 201 VESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
LQ V ++ R KS + + A S K ++R + K
Sbjct: 277 -NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAI-------KSRLKGKEGRIRGNLMGK 328
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------ 308
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 329 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAK 388
Query: 309 LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 389 YIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVL 448
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++ + +
Sbjct: 449 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANQPVMGI 508
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSV 483
D L++++ M K+ FL+K + MF +P+PA+ K + WT Q+ +
Sbjct: 509 VQDTLVAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPK--PLWTGKQVFSLI 566
Query: 484 LPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
+P + S GD + +++ E++ G + T+ + ++
Sbjct: 567 IPGNVNLIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHI 626
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY- 581
F E G + +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 627 CFLELGHDVCGQFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIE 686
Query: 582 -----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSD 625
H M T + EN + + K + + + L ++ + S
Sbjct: 687 VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSK 746
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q +G Q + GK + HF + +Y G ++ +
Sbjct: 747 GSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLA 800
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 801 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQ 859
Query: 746 FDYA 749
Y
Sbjct: 860 LRYG 863
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 276/632 (43%), Gaps = 75/632 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + ++ R G+P +Q+ E LQ V Y+ + R KS
Sbjct: 274 DLTYKLGDIIRANSNVKQAIREGSPAHIAQDFEQL-LQYHVATYMDNDIAGQPRALQKSG 332
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A + K ++R + K FS+R+VITGDA ++E+GVP IA+
Sbjct: 333 RPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLDEVGVPRSIAR 385
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVV 336
+T+ E V +NI L ELV N + SDG+ G L G V
Sbjct: 386 TLTYPETVTPYNIGRLHELVQNGPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKV 445
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++ GD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 446 ERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 505
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF 455
QS +AEV EL V ++S + + D L + K+ + FL K + ++
Sbjct: 506 QSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEAVMNIMLW 565
Query: 456 ALSPLPR-----PALSKARCSARWTALQILQSVLP------PGFDSCGDR------YLIK 498
+P P + R RWT QI+ +P DS D LI+
Sbjct: 566 ----VPNWDGVIPPPAIIRPRPRWTGKQIMSMAIPNIVSLHNAPDSKEDNPLKDEGLLIQ 621
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E+L G + I + IV ++ E GPE ++F + +Q ++ L +GFS+ + D
Sbjct: 622 SGELLYGLLSKKNIGAASGGIVHIVYNEHGPEASMKFLNGVQQVVNYWLLHNGFSIGIGD 681
Query: 559 FSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENHIRHVKMLVAKFI------ 610
K + +Q I + + Y + +T NEL L N + V+K +
Sbjct: 682 TIPDKLTIEKVQVHIDEHKAEVEAYTQQATANELEPLPGMNIRETFESKVSKALNTARDK 741
Query: 611 LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDI 657
++T L D S S + + Q +G Q+ + + F +TL
Sbjct: 742 AGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL---- 797
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + D P A+ G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 798 -PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQ 851
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L DV YDGTVRN + I+QF Y
Sbjct: 852 RRLVKALEDVSAKYDGTVRNSLGD-ILQFLYG 882
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL +EI S+ C + + L +P LG KC++C +
Sbjct: 19 IQFGLMAPEEIKNMSV--CHVLYPETMDETRTKPRDGGLNDPMLGSIDRQFKCKTCNQAM 76
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
G+C GHFG+IEL P+YHP I ++K
Sbjct: 77 -GECPGHFGHIELAKPVYHPGFIKKVK 102
>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
Length = 1391
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 197/702 (28%), Positives = 307/702 (43%), Gaps = 88/702 (12%)
Query: 116 EVKEMLKRIPEETRKKL---AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVS-TMSSDL 171
EV + +RIP+E + + + G+ P+D IL LPVPP C+ +SD S T DL
Sbjct: 226 EVMHLFERIPDEDVQYILMNSEHGH-PKD-MILTRLPVPPACIRPSVMSDLKSGTNEDDL 283
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESN--DLQLAVGQYL--EVRGTAKSSRDVD 227
++ + + V I++ SG +SQ + + LQ Y+ E+ G +
Sbjct: 284 TMKLTEIVFLNDVIVKHRLSGA---KSQIILEDWYFLQFQCALYINSELSGIPFDMQPKK 340
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
G+ Q K + R K FS R+VI+ D R++++GVP +A+ +T+
Sbjct: 341 PSRGLVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEMVAKILTY 396
Query: 288 EERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHR 338
VN NI +++LV N + L + SL+ G++ L+ G V+ R
Sbjct: 397 PTLVNEANIELMRKLVRNGPDIHPGAIFLKKKVSKLTISLKHGNRETLARNLKRGDVIER 456
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+MD D V NR P+ HK S+ + T + N +C P +ADFDGD + L +PQ+
Sbjct: 457 HMMDEDIVLFNRQPSLHKLSIMCHRAKILPHRTFRFNECVCTPYNADFDGDEMTLHFPQT 516
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL 457
A+AE L L + + L++ NG L + D + ++ K F D+A T Q+ L
Sbjct: 517 EEARAEALILMTNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASML 576
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY------ 495
+ LP P + K +A W+ QI +L P + G Y
Sbjct: 577 AGDEVNMVIKLPPPCIQKP--AALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEE 634
Query: 496 --------LIKKSEVLKGDFDRDTI--PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
L++ SEVL G D+ TI S IN I + + G + ++ L +
Sbjct: 635 FCVNDGFLLVRNSEVLAGCVDKSTIGSGSKIN-IFYVLLRDYGEDFAIQAMWKLGRVASY 693
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNE---LVDLQIE---- 596
+ GFS+ + D + K L QK + + +S Y R+ T + L +E
Sbjct: 694 YMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGFSKCDEYIRLLTIGQSPCLPGCNVEESLE 753
Query: 597 -------NHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK 647
+ IR V K L S L+ SKS S S + Q +G Q + GK
Sbjct: 754 SKIHKELSGIRDQAGEVCKKELHPSN-SPLVMSKSGSKGSYINISQMIACVGQQALN-GK 811
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
+ HF+R P AK G + F+ GL P E H++S RE +V ++
Sbjct: 812 RVPNGFEDRSLPHFKR----HSKIPAAK-GFVSNSFYSGLSPTELFFHAMSGREGLVDTA 866
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+EP + + L+ L D+ YD TVRN + IIQF Y
Sbjct: 867 VKTAEPMYMQRRLIKFLEDLCCQYDSTVRN-SAGEIIQFVYG 907
>gi|408390218|gb|EKJ69624.1| hypothetical protein FPSE_10220 [Fusarium pseudograminearum CS3096]
Length = 1450
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 173/704 (24%), Positives = 297/704 (42%), Gaps = 99/704 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 253 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 311
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G K++R R Q
Sbjct: 312 GSP-VQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKTTRGFCQRLKGKQG--------- 361
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV HNI L++ V
Sbjct: 362 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVK 420
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + +G SL+ G+K + L+ G +V R + D D V NR P+
Sbjct: 421 NGPDVWPGAQRVIKSDEGGYLQSLKFGNKEYIARDLKFGDIVERHLEDNDIVLFNRQPSL 480
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L ++
Sbjct: 481 HKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHN 540
Query: 415 LLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + NG + D + + ++ K F D+ L M + LP PA+
Sbjct: 541 LATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMMDGKTHLDLPPPAIIAP 600
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ + WT Q+ ++ P DS C D +++ SEV+
Sbjct: 601 Q--SLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTYKARPGQCPDMDPNDGWLVVRNSEVM 658
Query: 504 KGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF--- 559
G D+ T+ + I I + GP+E + + L L L GFS+ + D
Sbjct: 659 CGRMDKSTVGDGKKDSIFYVILRDFGPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPP 718
Query: 560 --------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L+ AA I+ + + + N+ L+ + + V+ +
Sbjct: 719 ESLIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSY 778
Query: 610 ILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
++ S L+ +KS S S V Q +G Q+ + F +TL HF
Sbjct: 779 CVETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTL-----PHF 833
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ + P +K G +K F+ GL P E + H++S RE +V ++ +E G + + LM
Sbjct: 834 HK----NARQPPSK-GFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLM 888
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + PV
Sbjct: 889 KSLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAAPV 931
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN---PFLGLPLEF--------GKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P+ PL+ G+C +C S
Sbjct: 25 GIKFGIQSNQDIANQAVLEVSDRLLYDIENNRAPYRHGPLDSRLGTSSKQGRCSTCQESL 84
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDG 105
C GHFG++ LP+P + H+ L+ M Q K+ G
Sbjct: 85 K-DCNGHFGHVRLPLPAF---HVGYLRFIMSILQEICKDCG 121
>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
Length = 872
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/637 (24%), Positives = 277/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPAHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V HNI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPHNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + W+ Q+L +P G FD +
Sbjct: 361 NMSYWIPDWDGVIPPPAIVKPK--PLWSGKQLLSMAIPKGIHLQRFDDGVNLMSPKDSGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F +Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSRIQKVVNFWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + + ++ IQ + Q ++D Q
Sbjct: 479 IGDTIADSSTMKDVTTTIQEA------KAKVQEIILDAQRNTLEPEPGMTLRESFEHNVS 532
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
I N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 533 RILNQARDTAGRTAEVNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 592 FSDRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 150/558 (26%), Positives = 259/558 (46%), Gaps = 70/558 (12%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+RSVIT D ++++GVP IAQ +T E V NI+ L+ LV+N
Sbjct: 329 RVRGNLMGKRVDFSARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNIDELRRLVEN 388
Query: 306 --------KLCLTYSDGSSSYS-LREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 356
K + + + L E S H L G V R + + D V NR P+ HK
Sbjct: 389 GPHRYPGAKYIIRHDERQIDIGILNERSDVH--LEYGYKVERHLRNDDYVLFNRQPSLHK 446
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
S+ + T ++N + P +ADFDGD +++F PQS + AEV E+ +V Q++
Sbjct: 447 MSIMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMFVPQSYESMAEVKEIMAVPNQII 506
Query: 417 SSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM----FALSPLPRPALSKARCS 471
S + + + D+LL + + +K F+D+ L M ++ LP PA+ K +
Sbjct: 507 SPQSNKPVMGIVQDSLLGIMLFTRKDNFIDRNTAMNLMMWLGKYSDKVLPTPAVLKPK-- 564
Query: 472 ARWTALQILQSVLP-----PGFDS----------CGDR---YLIKKSEVLKGDFDRDTIP 513
WT QIL V+P F++ C + LI++ +++ G ++ T
Sbjct: 565 PLWTGKQILSLVIPDVNLTKFFEAPPKPPQRRNWCPTQETIVLIQRGQLITGHLNKATAG 624
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
S ++ I+ E GP+ +F + Q ++ + L GF+V ++D SK + I +++
Sbjct: 625 SSSQGLIHIIWKECGPDGAKQFLSNAQNVVNQWLIEHGFTVGVQDTIASKKTMDGIHQKL 684
Query: 574 QALYSLLYH--------RMSTQN-----ELVDLQIENHIRHVKMLVAKFILKS----STL 616
Q + + +++TQ E + + N++ + + K + +
Sbjct: 685 QHYNNKVARLIQKAEQGKLTTQPGKNMMESFEYLVNNNLNQARDEAGQLAFKDLDPWNKI 744
Query: 617 GYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNY 671
++ + S + Q G +G Q + GK F S+TL HF + +Y
Sbjct: 745 QNMVGAGSKGTNINISQIMGCVG-QQNVEGKRVQFGFKSRTL-----PHFPK-----HDY 793
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
A G + + GLDP E H++ RE ++ ++ SE G + + L+ L D+++ Y
Sbjct: 794 GPASKGFVINNYISGLDPPEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKALEDIMVKY 853
Query: 732 DGTVRNVCSNSIIQFDYA 749
DGTVRN +IQF Y
Sbjct: 854 DGTVRN-SGEQVIQFLYG 870
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 176/698 (25%), Positives = 302/698 (43%), Gaps = 81/698 (11%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E L Y D IL+ LP+PP + + D +
Sbjct: 134 AERVLS-------VLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSA 186
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R R+G P E + LQ + Y + R T
Sbjct: 187 RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEF-AQLLQFHIATYFDNELPGQPRAT 245
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 246 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 298
Query: 280 EIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTF 329
IA +T+ E V +NI L+ELV+ + Y +RE +
Sbjct: 299 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 358
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L G V R + DGD V NR P+ HK S+ + + T ++N + P +ADFDGD
Sbjct: 359 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 418
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF 448
+++ PQS +AEVLEL V K ++S + + + D LL + + K+ F++K
Sbjct: 419 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 478
Query: 449 TQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----------------GFD 489
+ M+ +P PA+ K R WT Q+ ++P GF
Sbjct: 479 FMNILMWWEDFDGKVPTPAILKPR--PLWTGKQVFNLIIPKQINLSRASAWHSESETGFI 536
Query: 490 SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
+ GD + I+K E+L G + T+ + ++ I+ GP+ +F Q L+ L
Sbjct: 537 TPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWV--GPDAARKFLGHTQWLVNYWLL 594
Query: 549 ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS-TQNELVDLQ--------IENHI 599
+ FS+ + D A + I + I + + + Q++ ++ + EN +
Sbjct: 595 QNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQLEPEPGRTMMESFENRV 654
Query: 600 RHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
V K + +S+ L ++ + S + + Q +G Q + GK
Sbjct: 655 NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPY 713
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
+ HF + +Y G ++ + GL P E +++ RE ++ ++ S
Sbjct: 714 GFIGRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFYAMGGREGLIDTAVKTS 768
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 769 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 805
>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
pulchellus]
Length = 1429
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 179/704 (25%), Positives = 304/704 (43%), Gaps = 89/704 (12%)
Query: 117 VKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
V+++L+RIP+E L + P+D +L ++PVPP C+ +S + + D
Sbjct: 223 VRDLLRRIPDEDVPLLLMNTRCGRPED-LVLTHIPVPPLCIRPSVVSALKAGTNEDDVTV 281
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ 234
L +++ ++++ R+ + + LQL Y+ + ++
Sbjct: 282 KLTEIIFLNDVLQKHRTNGGKMSMIMEDWDFLQLQCALYVNSETSG---------IPLNM 332
Query: 235 DPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
P T+ ++++++ R K FS R+VI+ D R++E+GVP +A+ +T+
Sbjct: 333 QPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTY 392
Query: 288 EERVNVHNINYLQELVDNKLCLTY---------SDGSSSYSLREGSKGHTF--LRPGQVV 336
ERV HNI +++L+ N C + G Y LR G++ LR G +V
Sbjct: 393 PERVTQHNIELMRQLIRNG-CDVHPGANFLECRGTGIKRY-LRYGNREQLAQQLRLGDMV 450
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R + DGD V NR P+ HK S+ A V T + N +C P +ADFDGD ++L P
Sbjct: 451 ERHLKDGDVVLFNRQPSLHKLSIMAHVAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLP 510
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
Q+ A+AE L L L++ NG + D + ++ +K FLD+ QLA
Sbjct: 511 QTEEARAEALILMGTRANLVTPRNGEPLIAAIQDFITGGYLITQKDVFLDRIKACQLASC 570
Query: 456 ALS--------PLPRPALSKARCSARWTALQILQSVLPP-------------------GF 488
L+ LP PA+ K C WT QI ++ P G
Sbjct: 571 MLAGKDTNMKVELPPPAILKPVC--LWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGE 628
Query: 489 DSC-GDRY-LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
+ C D Y LI+ SE+L G D+ T+ S N I + + G + + L L
Sbjct: 629 EMCVNDAYVLIRNSELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAY 688
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYS--------LLYHRMSTQN--------E 589
+ GFS+ + D + + Q + A Y+ L ++ Q E
Sbjct: 689 YIQNRGFSIGIGDVTPGAGLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLE 748
Query: 590 LVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
V L+ + +R H + + K+++ + S + + Q +G Q + G
Sbjct: 749 AVCLKELSVVRDHAGKACLRELHKTNSPLIMAVCGSKGSFINISQMIACVG-QQAISGHR 807
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ HFE+ P A+ G ++ F+ GL P E H++ RE +V ++
Sbjct: 808 VPNGFEDRSLPHFEK----HDRSPQAR-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAV 862
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+E G + + L+ L D+ YD +VRN C ++QF Y +
Sbjct: 863 KTAETGYMQRRLVKSLEDLCCHYDRSVRNSCG-EVVQFCYGADG 905
>gi|239614510|gb|EEQ91497.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
dermatitidis ER-3]
Length = 1456
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 182/695 (26%), Positives = 294/695 (42%), Gaps = 94/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPEEARPEV----------FLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNINLKNALYKGAPVQTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS+R+VI+ D RV+E+ VP IA +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ + N T + ++Y ++ L+ G +V R I DGD
Sbjct: 417 KLRQRIRNG---TKTWPGANYVFKKSQNFKMNLKFGNPNLVANDLEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSP---- 459
+EL V+ L + NG + D + + ++ K ++ KAFT + ++ L
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFT-HICLYMLQSDTRF 592
Query: 460 -LPRPALSKARCSARWTALQILQSVLPP---------------GFDS---------CGDR 494
LP P++ K + WT QI ++ P GF + D
Sbjct: 593 DLPPPSVIKPQML--WTGKQIFNVLMRPNKQSPVLVNLDAACRGFKAPKGTPRDLDANDG 650
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V + GPE E + L L GF
Sbjct: 651 WLCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMGF 710
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS------LLYH------------RMSTQNELVDLQ 594
S+ + D L ++ Y+ L+ +M+ +N + +
Sbjct: 711 SIGITDVYPGDKLLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGIL 770
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + + +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 771 SKVRQQAGAICIAELSRWNSPL-IMATSGSKGSDINVAQMVALVGQQIIG-GQRVQDGFQ 828
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P P AK G ++ FF GL P E + H+IS RE +V ++ +E G
Sbjct: 829 DRTLPHF----PKHARQPPAK-GFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 884 YMSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 183/745 (24%), Positives = 322/745 (43%), Gaps = 85/745 (11%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K +GH G Y PS I L + A + D ++++ + V E+ KR
Sbjct: 175 QPAKPKGHGGCGR-----YQPS-IRRAGLELTAEWKNVNEDSQEKKIILTAERVLEIFKR 228
Query: 124 IPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
I +E + G PQ D I+ LPVPP + + +G + DL+ + V
Sbjct: 229 ISDEESLII---GMDPQYTRPDWMIVTVLPVPPLAVRPAVVMNGSAKNQDDLTHKLADIV 285
Query: 180 LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVS 233
++ R+ ++G E ++ LQ V ++ R KS R + + +
Sbjct: 286 KASNQLKRNEQNGAAAHIIAE-DTKMLQFHVCTMVDNEQPGLPRAMQKSGRPLKS---IK 341
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
Q K ++R + K FS+R+VIT D ++++GVP IAQ +TF E V
Sbjct: 342 Q----RLKGKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPELVTP 397
Query: 294 HNINYLQELV---DNKLC---LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTV 346
NI+ + ELV +N+ D LR K L+ G V R I D D V
Sbjct: 398 FNIDRMHELVKRGNNQYPGAKYIIRDNGDRIDLRFHPKASDLHLQCGYRVERHIRDNDYV 457
Query: 347 FINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
NR PT HK S+ + + T ++N + P +ADFDGD ++L PQSL KAE+
Sbjct: 458 IFNRQPTLHKMSMMGHRIKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETKAEIS 517
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPR 462
E+ V +Q+++ + + + D+L +++ K+ FL+K L M+ S +P+
Sbjct: 518 EIILVPRQIITPQSNKPVMGIVQDSLAAVRKFTKRDVFLEKEDVMILLMWLPSWDGKMPQ 577
Query: 463 PALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSE 501
P + K + WT Q++ ++P + S GD + LI+ E
Sbjct: 578 PCILKPK--PLWTGKQLMSLIVPGNVNLVRTHSTHPDEEDTGPYKWISPGDTKVLIENGE 635
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
VL G + T+ + + +F E G E EF+ ++Q ++ L +G ++ + D
Sbjct: 636 VLSGILCKKTLGTSSGSLGHVVFVEMGHEIAKEFYGNIQTVVNNYLLIEGHTIGMGDCIA 695
Query: 562 SKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHV------KML--------- 605
+IQ I +A ++ N+ ++ N +R ++L
Sbjct: 696 DAQTYDDIQNTIRKAKQDVIEVIEKAHNDELEPSPGNTLRQTFENQVNRLLNDARDKTGS 755
Query: 606 -VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
K + + + ++ + S + + Q +G Q + GK HF
Sbjct: 756 SAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVG-QQNVEGKRIPFGFRHRTLPHF--- 811
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 812 --IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 869
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN +++++Q Y
Sbjct: 870 ESVMVRYDGTVRN-SNDALVQLRYG 893
Score = 43.1 bits (100), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGT 62
++V ++F + + EI S+++ I ++ L +P G+ +C++C
Sbjct: 15 EVVRVQFSILSPDEIKRMSVTEGGIRYSETTEGGRPKLQGLMDPRQGVVDRLSRCQTCAG 74
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF 97
+ C GHFG+IEL P++H I+++ + F
Sbjct: 75 NM-HDCPGHFGHIELSKPVFHVGFIAKVVKVLRCF 108
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 229/867 (26%), Positives = 355/867 (40%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H H+ E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG VV R + D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTD 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T QI+ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKQEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ +IQ Y
Sbjct: 826 ALSDLRAEYDGTVRSLYG-EVIQVAYG 851
>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
Length = 873
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 159/611 (26%), Positives = 275/611 (45%), Gaps = 67/611 (10%)
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
R + G P E ES LQ V Y++ + G ++ + S P + +A L
Sbjct: 91 RCEQEGAPAHVINEFESL-LQYHVATYMDNDIAGQPQALQK-------SGRPVKSIRARL 142
Query: 245 E----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
+ ++R + K FS+R+VITGD ++++GVP IA+ +T+ E V +NI L
Sbjct: 143 KGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRLT 202
Query: 301 ELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPT 353
+LV N D LR + G L+ G V R I+D D V NR P+
Sbjct: 203 QLVRNGPNEHPGAKYIIRDTGERIDLRYHKRVGDIALQYGWKVERHIVDDDPVLFNRQPS 262
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
HK S+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L V
Sbjct: 263 LHKMSMMAHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPL 322
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSK 467
Q++S + + + D L ++ M K+ F++ F Q + + P +P+PA+ K
Sbjct: 323 QIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFIE--FDQVMNILFWVPHWDGVVPQPAILK 380
Query: 468 ARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIKKSEVLKGDFDRDTIPSV 515
+ WT Q+ +P G FD + LI K E++ G D+ T+ +
Sbjct: 381 PK--PLWTGKQMASLCIPKGIFLQRFDEGNPLISPKDNGMLISKGEIMYGVVDKKTVGAT 438
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-- 573
++ +I EKGP+ FF ++Q ++ L +GFS+ + D A + +I I
Sbjct: 439 GGGLIHTIMREKGPQVCSSFFGNIQKVVNFWLLHNGFSIGIGDTIADGATMRDIANTISE 498
Query: 574 --QALYSLLYHRMS---------TQNELVDLQIE---NHIRHVKMLVAKFILKS-STLGY 618
Q + ++ + T E + + N R A+ LK + +
Sbjct: 499 AKQKVQEIILQAQANTLSPEPGMTLRESFEQNVSRVLNQARDTAGRSAEMSLKELNNVKQ 558
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
++ + S + + + +G Q+ + G+ + HF + +Y G
Sbjct: 559 MVVAGSKGSFINISLMSACVGQQIVE-GRRIPFGFADRSLPHFTKD-----DYSPESKGF 612
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H+++ RE ++ ++ +E G + + L+ L D+++ YDGT RN
Sbjct: 613 VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIXRRLVKALEDIMVHYDGTTRNS 672
Query: 739 CSNSIIQFDYA 749
+ +IQF Y
Sbjct: 673 LGD-VIQFIYG 682
>gi|261196045|ref|XP_002624426.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
gi|239587559|gb|EEQ70202.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
Length = 1456
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 182/695 (26%), Positives = 294/695 (42%), Gaps = 94/695 (13%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L PEE R ++ ++ +Y+P PP C+ P + ++ DL+ +
Sbjct: 253 ELLGLNPEEARPEV----------FLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDI 301
Query: 179 VLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPN 237
+ + + + G P E + LQLAV +V G K+ R G Q
Sbjct: 302 IQSNINLKNALYKGAPVQTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIR-GFCQ--- 357
Query: 238 STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
K + R K FS+R+VI+ D RV+E+ VP IA +T+ E+V +N
Sbjct: 358 -RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKE 416
Query: 298 YLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDT 345
L++ + N T + ++Y ++ L+ G +V R I DGD
Sbjct: 417 KLRQRIRNG---TKTWPGANYVFKKSQNFKMNLKFGNPNLVANDLEEGDIVERHIEDGDI 473
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 474 VLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEA 533
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSP---- 459
+EL V+ L + NG + D + + ++ K ++ KAFT + ++ L
Sbjct: 534 MELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFT-HICLYMLQSDTRF 592
Query: 460 -LPRPALSKARCSARWTALQILQSVLPP---------------GFDS---------CGDR 494
LP P++ K + WT QI ++ P GF + D
Sbjct: 593 DLPPPSVIKPQML--WTGKQIFNVLMRPNKQSPVLVNLDAACRGFKAPKGTPRDLDANDG 650
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEV+ G D+ TI S + V + GPE E + L L GF
Sbjct: 651 WLCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMGF 710
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYS------LLYH------------RMSTQNELVDLQ 594
S+ + D L ++ Y+ L+ +M+ +N + +
Sbjct: 711 SIGITDVYPGDKLLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGIL 770
Query: 595 IENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
+ + + +A+ +S L + S S + V Q +G Q+ G+
Sbjct: 771 SKVRQQAGAICIAELSRWNSPL-IMATSGSKGSDINVAQMVALVGQQIIG-GQRVQDGFQ 828
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF P P AK G ++ FF GL P E + H+IS RE +V ++ +E G
Sbjct: 829 DRTLPHF----PKHARQPPAK-GFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD TVRN SN I+QF Y
Sbjct: 884 YMSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYG 917
>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera
bruxellensis AWRI1499]
Length = 1472
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 187/697 (26%), Positives = 300/697 (43%), Gaps = 103/697 (14%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSS--DLSIAMLKKVLKQVEIIRSSRS 191
KG P+ YI YLP PP C+ P + G S S+ DL++ L +++ +IR+
Sbjct: 248 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMGQSNTSNEDDLTVK-LTEIVWTSSMIRAGIQ 304
Query: 192 GTPNFESQEVESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAW 243
S + + LQLAV Y+ + G+ S+ G Q K
Sbjct: 305 KGITLNSLFEQWDYLQLAVAMYINSDSVSPNLMPGSTGGSKSSKPIRGFCQ----RLKGK 360
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS+R+VI+ D RV+++ P +A+ +T+ ERV +N N LQ LV
Sbjct: 361 QGRFRGNLSGKRVDFSARTVISPDPNLRVDQVCXPELVAKVLTYPERVTRYNKNKLQTLV 420
Query: 304 DNKL-------CLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTT 354
N L + +LR G + L G VV R +++GD V NR P+
Sbjct: 421 RNGPDLYPGANYLIRRNEDVKRNLRYGDRNKLAKTLSFGDVVERHLVEGDIVLFNRQPSL 480
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
H+ S+ A V V T + N +C P +ADFDGD ++L PQ+ A+AE L V+
Sbjct: 481 HRLSILAHYVTVKKWRTFRFNECVCAPYNADFDGDEMNLHVPQTEEARAEAATLMGVKSN 540
Query: 415 LLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSP----LPRPALSKA 468
LL+ +G + D + S + K F D+A FT+ M + +P P + K
Sbjct: 541 LLTPKSGEPIIAATQDFITGSFLITXKDSFYDRAVFTEMCVMMSDGATKFDVPPPTILKP 600
Query: 469 RCSARWTALQILQSVLPP--------GFDSCGDRY------------------LIKKSEV 502
+ WT QI ++ P FDS + L++ S++
Sbjct: 601 --AYMWTGKQIYSLLIRPNHESKVLLNFDSKSKTFIPPKDGLPNEMSPNDGYVLVRNSQL 658
Query: 503 LKGDFDRDTIPSVINEIVTSIFF----EKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
L G D+ + TS+F+ + G +E + + + L + GFS+ + D
Sbjct: 659 LSGVMDKALLGGGKK---TSLFYTILRDYGADEAAKAMNRMAKLAARYMGEKGFSIGIND 715
Query: 559 FSLSKAALWNIQKEIQALYS------LLYH--RMSTQ-----NELVDLQIENHIRHVKML 605
S+ Q+ ++ Y LY ++ TQ E ++ +I + V+
Sbjct: 716 VIPSEPVKQKKQEMVRIAYKKCDDLIKLYKSGKLETQPGCNEEETLEAKIGGLLSKVREE 775
Query: 606 VAKFILKS----------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V +F + +T G + + S + VV Q G ++ D F ++TL
Sbjct: 776 VGEFCINELDPSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQNRTL-- 831
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
HF P + P +K G + F+ GL+P E H+IS RE +V ++ +E G
Sbjct: 832 ---PHF----PKNSKTPQSK-GFVSDSFYSGLNPPEFFFHAISGREGLVDTAVKTAETGY 883
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA 752
+ LM + D+ YDGTVRN + I+QF Y +
Sbjct: 884 TSRRLMKSMEDLSTQYDGTVRN-SGDGIVQFRYGADG 919
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 3 ENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL-----------ANPFLGLP 51
+ T ++ +I G++FG + +EI + S + S + L +P +G+
Sbjct: 2 KETVVDVVPKRISGLQFGALSNEEIVSQSEVEVSTRNLFDLDKGRVPVSNGALDPRMGIS 61
Query: 52 LEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKN 103
+C +C C GHFG+I+L +P++ H+ K T+ Q KN
Sbjct: 62 SSMAECATC-HGNLATCHGHFGHIKLALPVF---HVGYFKATIQVLQTICKN 109
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 158/635 (24%), Positives = 275/635 (43%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 255 DLTFKLADVIKANMNVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 313
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 314 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 363
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 364 IAKTLTYPEIVTPYNIHKLTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 423
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 424 WRVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 483
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 484 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 541
Query: 453 AMFALSP---LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + + W+ Q+L +P G FD D LI
Sbjct: 542 NMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSLAIPKGIHLQRFDGGRDLLSAKDTGMLI 601
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP + F S+Q ++ L +GFS+ +
Sbjct: 602 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIG 661
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D A + +I K IQ + Q ++D Q +
Sbjct: 662 DTIADAATMKDITKTIQEA------KAKVQEIILDAQHNKLEPEPGMTLRESFEHNVSRV 715
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 716 LNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFA 774
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 775 DRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 829
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 830 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 863
Score = 46.6 bits (109), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +EI S++ + A++ L +P LG KC++CG +
Sbjct: 18 VQFGLMSPEEIRAISVAKIVYPETFDQATKRFKEGGLNDPRLGSIDRNYKCQTCG-EDMS 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELTRPVFHIGFIAKIK 101
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 229/867 (26%), Positives = 355/867 (40%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H H+ E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG VV R + D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTD 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T QI+ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ +IQ Y
Sbjct: 826 ALSDLRAEYDGTVRSLYG-EVIQVAYG 851
>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
Length = 1376
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 188/701 (26%), Positives = 303/701 (43%), Gaps = 86/701 (12%)
Query: 117 VKEMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
V ++ +RI +E + LA K F P++ YI +Y+ VPP C+ P ++ +T DL++
Sbjct: 199 VLDLFRRISDEDCELLALKPQFGRPEE-YIWQYICVPPVCIR-PSVAQDGATNEDDLTVK 256
Query: 175 MLKKVLKQVEIIRS--SRSGTPNFESQEVESND-LQLAVGQYL--EVRGTAKSSRDVDAR 229
+ + V II+S ++ +Q VE D LQL+V Y+ E+ G S R
Sbjct: 257 LTEIVFTN-NIIKSGLTKGSKGTTTAQLVEQWDFLQLSVALYINSEMPGVPPMSGHKPIR 315
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
G Q K + R K FS R+VI+ D ++EI VP +A+ +T+ E
Sbjct: 316 -GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAIDEIAVPERVAKILTYPE 370
Query: 290 RVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGH-----------TFLRPGQVVHR 338
RV HNI +++ V N T+ + + R+G K LR G +V R
Sbjct: 371 RVFAHNIEAMRQAVRNG-TDTHPGANYHVNGRDGFKRFLKFPGMRDDIAANLRVGDIVER 429
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
I DGD V NR P+ HK S+ + T ++N +C P +ADFDGD +++ PQ+
Sbjct: 430 HIRDGDIVLFNRQPSLHKLSIMCHRAKIRPWRTFRLNECVCSPYNADFDGDEMNMHVPQT 489
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFA 456
A+ E L L V+ L++ NG + D + + ++ + ++F F Q + F
Sbjct: 490 EEARTEALTLMGVKHNLVTPRNGEPIVAATQDFITAAFLLSRRGRFFTRAQFVQICSYFG 549
Query: 457 LSP----LPRPALSKARCSARWTALQILQSVLPPGFDS---------C------------ 491
+ LP PA+ K WT Q+ ++ P S C
Sbjct: 550 DASLHIDLPPPAILKP--VRLWTGKQLFSCMIRPNKQSPVLVNLEARCRTFEKPRDGHVN 607
Query: 492 ----GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFFDSLQPLLME 545
D YL I+ SEVL G D+ T+ + V + + GP+ + + L
Sbjct: 608 EMSPNDGYLVIQNSEVLCGVMDKATVGDGKKQSVFGVILRDYGPDAAVASMNRLAKTCAR 667
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL------LYHRMSTQN-------ELVD 592
L GFS+ + D + + + ++ Y L R +N + ++
Sbjct: 668 WLSNQGFSLGIGDVTPGQHLRETKDRNVEIAYRQCRDLIELAKRGKLENLPGCDQEQTLE 727
Query: 593 LQIENHIRHVKMLVAKFILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKF 648
+I + V+ V + + S L+ S S SK V Q +G Q+ G
Sbjct: 728 SKISGVLSSVRSDVGEICMTELSRHNAALLMSVCGSKGSKINVAQMVACVGQQIIS-GSR 786
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ HF P P +K G ++ FF GL+P E + H+IS RE +V ++
Sbjct: 787 VPNGFQDRSLPHF----PKKSKDPPSK-GFVRNSFFSGLEPTEFLFHAISGREGLVDTAV 841
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + LM L D+ YD +VRN ++QF Y
Sbjct: 842 KTAETGYMQRRLMKALEDLSTHYDFSVRN-SEGGVVQFLYG 881
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 179/732 (24%), Positives = 306/732 (41%), Gaps = 90/732 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I + L + A + D +++ S V E+LK I +E L G P+
Sbjct: 181 YQPS-IRRVGLDLTAEWKHVNEDSQEKKISLSAERVWEILKHITDEECFIL---GMDPKL 236
Query: 141 ---DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP--- 194
D I+ LPVPP + + G + DL+ + + E++R+ ++G
Sbjct: 237 ARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHV 296
Query: 195 --------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK 246
F + ND+ G ++ + K + + AR K +
Sbjct: 297 ILENIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGR 343
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
+R + K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 344 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRG 403
Query: 307 LC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 404 NSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 463
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 464 MGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 523
Query: 420 NGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWT 475
+ + D L +++ M K+ FL+K + MF +P+PA+ K + WT
Sbjct: 524 ANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPK--PLWT 581
Query: 476 ALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPS 514
Q+ ++P + S GD + +++ SE++ G + T+ +
Sbjct: 582 GKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHSELVMGILCKKTLGT 641
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ 574
++ E G E +F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 642 SAGSLLHICMLELGHEVCGQFYGNIQTVVNSWLLLEGHSIGIGDTIADPQTYLEIQKAIK 701
Query: 575 A----LYSLLY--HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLG 617
+ +++ H M T + EN + + K + + + L
Sbjct: 702 KAKEDVIEVIHKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLK 761
Query: 618 YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYG 677
++ S S + + Q +G Q + GK + HF + +Y G
Sbjct: 762 AMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRG 815
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 816 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRN 875
Query: 738 VCSNSIIQFDYA 749
+IQ Y
Sbjct: 876 SVGQ-LIQLRYG 886
>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
Length = 1000
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 249/545 (45%), Gaps = 49/545 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 263 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 322
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DG+ + NR P+ HK S
Sbjct: 323 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNRQPSXHKES 382
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS ++AE+ +L V + ++S
Sbjct: 383 MMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQESRAELQQLCLVPRNIVSP 442
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K + RW
Sbjct: 443 QKNAPLMGIVQDTLCGIYKICRRDNFLTKEQVMNIMLWVPEWDGTIPQPAILKP--TPRW 500
Query: 475 TALQILQSVLPPGFD-------SCGDRY-------LIKKSEVLKGDFDRDTIPSVINEIV 520
T QI+ VLP + S D Y +I++ E++ G + + + ++
Sbjct: 501 TGKQIISMVLPKNLNLEETESGSVKDYYAPSDEGLMIQEGELMFGLLKKKNVGTSAGGVI 560
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
+IF E G + + FF+ Q ++ L +GFS+ + D + IQ + +L+
Sbjct: 561 HTIFNENGHDAAMAFFNGAQVVVNYWLLHNGFSIGIGDTIPDGDTVKKIQSAVAEQKALV 620
Query: 581 YHRMSTQ-NELVDLQIENHIRHV---KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
T N+ ++ +IR K++ + G DS D + +AG
Sbjct: 621 AKTTETAYNDELEPSPGMNIRMTFESKVMADLNKARDKAGGAAQDSLPDYNDFVQMSRAG 680
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNY------------PTAKYGLIKGCFF 684
G ++ LV A +RI P NY PT++ G I+ +
Sbjct: 681 SKGSGINIAQIM---ALVGQQAVEGKRI-PFGFNYRTLPHFSKDDYSPTSR-GFIENSYL 735
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H+++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+
Sbjct: 736 RGLTPPEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVCVKYDGTVRDSRGN-IM 794
Query: 745 QFDYA 749
QF Y
Sbjct: 795 QFLYG 799
>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
Length = 872
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/631 (24%), Positives = 278/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + + G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQKLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + +++ + Q +
Sbjct: 303 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIYIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDR-------Y 495
+ P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NICYWIPNWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHLQRFDGGKDMLSPNDTGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV- 554
LI E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAKLFSSIQKVVNYWLLHNGFSIG 478
Query: 555 ---SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD------------LQIENHI 599
++ D K IQ+ + + ++ + E +I N
Sbjct: 479 IGDTIADAGTXKTITSTIQEAKEKVXEIILDAQQNRXEPEPGMTLRESFEHNVSRILNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSAXVGQQIVE-GKRIPFGFSDRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + I+QF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IVQFVYG 682
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 229/867 (26%), Positives = 355/867 (40%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H H+ E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG VV R + D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTD 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T QI+ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQIVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKKEIYNEIDRAKVEVNNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ +IQ Y
Sbjct: 826 ALSDLRAEYDGTVRSLYG-EVIQVAYG 851
>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
Length = 872
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 157/637 (24%), Positives = 274/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVIAEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEVVTPYNIHKLTEYVRNGPNDHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQ +AE+ ++ +V Q++S + + + D L ++ M + F++ F Q +
Sbjct: 303 HVPQLPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--FDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RY 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 361 NMLYWIPNWDGVIPPPAIVKPK--PLWTGKQLLSMAIPKGIHIQRFDDGKDLLSPKDSGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ + F +Q ++ L +GFS+
Sbjct: 419 LIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSLIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + + I A + Q ++D Q
Sbjct: 479 IGDTIADSETMRTVTTTIDA------AKKKVQEIILDAQRNKLEPEPGMTLRESFEHNVS 532
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 533 RVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 592 FADRSLPHFTKD-----DYSPELKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
Length = 871
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 247/544 (45%), Gaps = 49/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 148 RIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R IMD D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 268 MMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP---LPRPALSKARCSARW 474
+ + + D L ++++ + FL+ F L M P P + + W
Sbjct: 328 QSNKPCMGIVQDTLCGIRILTLRDTFLE--FDHVLNMLYWVPDWDGVIPPPAIIKPKPLW 385
Query: 475 TALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QIL + +P G FD + LI +++ G D+ T+ S ++
Sbjct: 386 TGKQILSAAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHV 445
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED--------------FSLSKAALWN 568
+ EKGP+ F ++Q ++ L +GFS + D + +K + N
Sbjct: 446 VTREKGPQVCARLFGNIQKVVNFWLLHNGFSTGIGDTIANGETIKEITETIAEAKKKVEN 505
Query: 569 IQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILK-SSTLGYLIDSKSD 625
+ KE Q+ H M+ + D ++ N R +A+ L S+ + ++ + S
Sbjct: 506 VTKEAQSNLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEVNLNDSNNVKQMVSAGSK 565
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q S GK V+ HF + +Y G ++ +
Sbjct: 566 GSFINIAQMSACVG-QQSVEGKRIPYGFVDRTLPHFSKD-----DYSPESKGFVENSYLR 619
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ L D+++ YD T RN N +IQ
Sbjct: 620 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQ 678
Query: 746 FDYA 749
F Y
Sbjct: 679 FVYG 682
>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gibberella zeae PH-1]
Length = 2443
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 170/690 (24%), Positives = 293/690 (42%), Gaps = 99/690 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 1246 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 1304
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G K++R R Q
Sbjct: 1305 GSP-VQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKTTRGFCQRLKGKQG--------- 1354
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV HNI L++ V
Sbjct: 1355 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVK 1413
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + +G SL+ G++ + L+ G +V R + D D V NR P+
Sbjct: 1414 NGPDVWPGAQRVIKSDEGGYLQSLKFGNREYIARDLKFGDIVERHLEDNDIVLFNRQPSL 1473
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L ++
Sbjct: 1474 HKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHN 1533
Query: 415 LLSSHNGNLNLQLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + NG + D + + ++ K F D+ L M + LP PA+
Sbjct: 1534 LATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMMDGKTHLDLPPPAIIAP 1593
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ + WT Q+ ++ P DS C D +++ SEV+
Sbjct: 1594 Q--SLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTYKARPGQCPDMDPNDGWLVVRNSEVM 1651
Query: 504 KGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF--- 559
G D+ T+ + I I + GP+E + + L L L GFS+ + D
Sbjct: 1652 CGRMDKSTVGDGKKDSIFYVILRDFGPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPP 1711
Query: 560 --------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKF 609
L+ AA I+ + + + N+ L+ + + V+ +
Sbjct: 1712 ESLIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSY 1771
Query: 610 ILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHF 661
++ S L+ +KS S S V Q +G Q+ + F +TL HF
Sbjct: 1772 CVETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTL-----PHF 1826
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ + P +K G +K F+ GL P E + H++S RE +V ++ +E G + + LM
Sbjct: 1827 HK----NARQPPSK-GFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLM 1881
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVN 751
L D+ YD TVR I+QF + +
Sbjct: 1882 KSLEDLSTQYDDTVR-TSGGGIVQFQFGAD 1910
>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
Length = 999
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 163/639 (25%), Positives = 281/639 (43%), Gaps = 90/639 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISKLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWFLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ-----------------IE 596
+ + D + + I+ E+ + + R++ DL+
Sbjct: 589 IGIGDTVPDRGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFESKVSAAL 647
Query: 597 NHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
N R + LK S + + S + + Q +G Q S GK F
Sbjct: 648 NGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFKY 706
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y A G ++ + GL P E H+++ RE ++ ++
Sbjct: 707 RTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 756
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 757 AETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/558 (25%), Positives = 247/558 (44%), Gaps = 57/558 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VIT D ++++GVP+ IA +T+ E V +NI L+ELV+
Sbjct: 22 RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 81
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ Y +R+ + L G V R + DGD V NR P+ H
Sbjct: 82 GPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLH 141
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N + P +ADFDGD +++ PQS +AEVLEL V K +
Sbjct: 142 KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 201
Query: 416 LSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCS 471
+S + + D LL KV + F++K + M+ +P P + K R
Sbjct: 202 VSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPR-- 259
Query: 472 ARWTALQILQSVLP----------------PGFDSCGDRYL-IKKSEVLKGDFDRDTIPS 514
WT Q+ ++P G+ + GD + I+K E+L G + T+ +
Sbjct: 260 PLWTGKQVFNLIIPKQINLLRYSVWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGT 319
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQ 574
++ I+ E GP+ +F Q L+ L FS+ + D + + I + I
Sbjct: 320 STGSLIHVIWXEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETIS 379
Query: 575 ALYSLLYHRM-STQNELVDLQ--------IENHIRHV--------KMLVAKFILKSSTLG 617
+ + + + Q +L++ + EN + V K + +S+ L
Sbjct: 380 NAKAKVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLK 439
Query: 618 YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYG 677
++ + S + + Q +G Q + GK ++ HF + +Y G
Sbjct: 440 AMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFIDRTLPHFTKD-----DYGPESRG 493
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN
Sbjct: 494 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 553
Query: 738 VCSNSIIQFDYAVNARKS 755
+ +IQF Y + S
Sbjct: 554 SLGD-VIQFLYGEDGMDS 570
>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
Length = 873
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 166/630 (26%), Positives = 272/630 (43%), Gaps = 69/630 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANSNVARCEQEGAPAHVVNEFESL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E + +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPEIITPYNIQRLTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHIQDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V Q++S + + + D L ++ M K+ FL+ F Q + +
Sbjct: 306 QSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDNFLE--FDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDR---------YL 496
P +P P + R WT QI+ +P G DS G L
Sbjct: 364 FWIPSWDGNVPTPTI--LRPKPLWTGKQIISMCIPNGIYLQRLDSEGGSAWISPKDTGML 421
Query: 497 IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
I K E++ G D+ T+ + +V +I EKGP+ FF +Q ++ L + FS+ +
Sbjct: 422 ISKGEIMFGAVDKKTVGATSGGLVHTIMREKGPQVACNFFGEVQKVVNYWLLHNSFSIGI 481
Query: 557 EDFSLSKAALWNI-------QKEIQALY------SLLYHRMSTQNELVDLQIENHIRHVK 603
D + + + E+Q L L T E + +
Sbjct: 482 GDTIADATTMSQVYDHIATAKAEVQKLILKVQSNDLSPDPGMTLRETFEAHASKAFNQAR 541
Query: 604 MLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
K KS + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 542 DDAGKSAEKSLKELNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFQDRTLP 600
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + ++ G I+ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 601 HFTKD-----DFSGESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 655
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++ YDGT RN + IIQF Y
Sbjct: 656 LVKALEDVMVHYDGTARNSLGD-IIQFLYG 684
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 202/883 (22%), Positives = 354/883 (40%), Gaps = 173/883 (19%)
Query: 9 ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLG----LPLEFGKCES---CG 61
I++ +I I+FGL + +EI AS+ + H + N F + L+ G E C
Sbjct: 5 IVKKRITSIQFGLFSPEEIRKASV--VQVIHPETMENGFPKPGGLIDLKMGTTERAFLCS 62
Query: 62 TSEPGK--CEGHFGYIELPIPIYHPSHISELKLTM-----YAFQLQIKNDGVAQRL---- 110
+ E C GHFG+IEL P++H ++S++K + Y +++I + + L
Sbjct: 63 SCEKDNFSCPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKIDKKHLKKDLNFVW 122
Query: 111 ----LSSCCE---------------------------------------------VKEML 121
S CE V +L
Sbjct: 123 NSCKTKSVCEGELTEAGFSGCGNKQPVIKKEGMGLVAFMKGEEDSDGKVILNGERVHNIL 182
Query: 122 KRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
K+I +E L Y D ++ L VPP + + +G+ DL+ + V
Sbjct: 183 KKISDEDSTYLGFDTKYSKPDWLVITVLLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVK 242
Query: 181 KQVEIIRSSRSGTPNFESQEVES-----------NDLQLAVGQYLEVRGTAKSSRDVDAR 229
+ + G P ++ E NDL GQ ++ + + + + AR
Sbjct: 243 ANTYLKKYELEGAPGHVIRDYEQLLQFHIATMIDNDLS---GQPQALQKSGRPIKSISAR 299
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
K ++R + K FS+RSVIT DA + E+GVP EIA+ TF E
Sbjct: 300 L----------KGKEGRVRGNLMGKRVDFSARSVITPDANISLEEVGVPLEIAKIHTFPE 349
Query: 290 RVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG--------SKGHTFLRPGQVVHRRIM 341
+ +NI L LV N ++Y +R ++G L G +V R +
Sbjct: 350 TITPYNIERLTRLVSNG---PNEYPGANYVIRSDGQRIDLNFNRGDIKLEEGYIVERHMQ 406
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
+GD V NR P+ HK S+ V V + T ++N P +ADFDGD ++L PQS
Sbjct: 407 NGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNADFDGDEMNLHMPQSYNT 466
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL-------- 452
KAE+ EL V KQ+LS + + + D+L SL++ + F DK T QL
Sbjct: 467 KAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTFFDKRETMQLLYSINLSK 526
Query: 453 ----------AMFALSPLPRPALSKARCSARWTALQILQSVLPP-GFDSCGDRY------ 495
+ L P +S + WT QI +LP + + + +
Sbjct: 527 YENFNNEDMHKTSIMDLLNYPTISYPK--KLWTGKQIFSYILPNIVYSAVSNEHDENDLE 584
Query: 496 -------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL- 547
+I+ E+L G D+ ++ + ++ I + + + FFD Q ++ + +
Sbjct: 585 NLKDTVVIIRNGELLSGIIDKKSVGTTQGGLIHIIANDFSHKRITSFFDDTQKIMNKFIT 644
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQIENHIRHVKMLV 606
F + FS+ + D +K + +Q I+ A Y + +L++ N + + +
Sbjct: 645 FINAFSIGIGDAIANKETMVQVQSSIENAKYQV--------EKLIERAQRNKLERLPGMS 696
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG-----LQLSDRGKFYSKTLVEDIASH- 660
K +S + Y+++ D + + + F + +G F + + V
Sbjct: 697 MKESFESQ-VNYILNKPRDISGTSASKSLNFCNNMRTMVLAGSKGSFINISQVTACLGQQ 755
Query: 661 ---FERIYPMDLNYPTAKY-----------GLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
+RI P NY + + G ++ + GL P E H++ RE ++ +
Sbjct: 756 NVEGKRI-PFGFNYRSLPHFSKGDYSGKSRGFVENSYVKGLAPEEFYFHAMGGREGLIDT 814
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ + D + D +VR + I Q++Y
Sbjct: 815 AIKTAETGYIQRRLVKAMEDATVGLDRSVRG-ANGFIYQYEYG 856
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 177/707 (25%), Positives = 305/707 (43%), Gaps = 72/707 (10%)
Query: 98 QLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLS 156
Q Q+ + ++ S V +LKRI +E + L Y D IL+ LPVPP +
Sbjct: 120 QEQLMPEPAERKQQLSAERVLNVLKRITDEECQMLGLNPKYARPDWMILQVLPVPPPPVR 179
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D S DL+ + + + + ++G P E + LQ + Y
Sbjct: 180 PSVMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIITEF-AQLLQFHIATYFDN 238
Query: 215 ----EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
+ R T +S R + + S KA ++R + K FS+R+VIT D
Sbjct: 239 ELPGQPRATQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 291
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----- 325
++++GVP+ IA +T+ E V +N+ L+ELV+ + Y +RE +
Sbjct: 292 NIDQLGVPWSIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLR 351
Query: 326 -----GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
L G V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 352 YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 411
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + + K
Sbjct: 412 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 471
Query: 441 K-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP---------- 486
+ F++K + M+ +P P + K R WT Q+ ++P
Sbjct: 472 RDTFIEKDVFMNILMWWEDFDGKIPAPTIYKPR--PIWTGKQVFNLIIPKQINLIRTSAW 529
Query: 487 ------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
G + GD + I+K EV+ G + T+ + ++ I+ E GP+ +F
Sbjct: 530 HSESESGVITPGDTLVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHT 589
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQ---- 594
Q L+ L GFS+ + D A + I + I +A + + Q + ++ +
Sbjct: 590 QWLVNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKMLIKAAQEKQLEAEPGRT 649
Query: 595 ----IENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
EN + V K + +S+ L ++ + S + + Q +G Q
Sbjct: 650 MMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQ 708
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ GK HF + D P ++ G ++ + GL P E H++ RE
Sbjct: 709 NVEGKRIPYGFDGRTLPHFTK----DDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREG 763
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 764 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 166/679 (24%), Positives = 288/679 (42%), Gaps = 100/679 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 261 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 319
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 320 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 370 IARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S + + + D L ++ M + F+D + Q +
Sbjct: 490 HVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID--YDQVM 547
Query: 453 AMFALSP---LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + A+ WT Q+L +P G FD D LI
Sbjct: 548 NMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKGIHLQRFDGGKDLLSPKDTGMLI 607
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP + F S+Q + L +GFS+ +
Sbjct: 608 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPRVCAQLFSSIQKVTNYWLLHNGFSIGIG 667
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D + + +I I ++ Q ++D Q +
Sbjct: 668 DTIADVSTMKDITSTISEA------KIKVQEIILDAQSNKLEPEPGMTLRESFEHNVSRV 721
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 722 LNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFS 780
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 781 DRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 835
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMS 774
+ + L+ L D+++ YDGT RN + IIQF Y + + T +
Sbjct: 836 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGEDG---------------IDGTQVE 879
Query: 775 NPAYKAVLDSSPSSNNSWE 793
K +D+ P SN+S+E
Sbjct: 880 ----KQSVDTIPGSNDSFE 894
Score = 44.7 bits (104), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ L +P LG +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLGSIDRNFRCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELAKPVFHIGFIAKIK 101
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 157/604 (25%), Positives = 268/604 (44%), Gaps = 63/604 (10%)
Query: 192 GTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE---- 245
G+P Q++E LQ V Y++ + G ++ + S P + +A L+
Sbjct: 96 GSPQHVIQDIEKL-LQYHVATYMDNDIAGQPQALQK-------SGRPVKSIRARLKGKEG 147
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS R+VI+GD ++++GVP IA+ +T+ E V +NI+ L +LV N
Sbjct: 148 RIRNNLMGKRVDFSGRTVISGDPNLELDQVGVPLSIARTLTYPEIVTPYNIDRLTQLVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D + LR + G L+ G V R I+D D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDNGTRIDLRYSKRTGDIQLQYGWKVERHIVDNDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 268 MMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSAR---W 474
+ + + D L + K+ K F++ + Q L M P + W
Sbjct: 328 QSNKPCMGIVQDTLAGVRKLTLKSTFIE--YDQVLNMLYWIPEWDGIVPPPTIIKPKPLW 385
Query: 475 TALQILQSVLPPG-----FDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T Q+L +P G FD + LI +++ G D+ T+ S ++
Sbjct: 386 TGKQVLSMAIPSGIHLQRFDDGTTMLSPKDNGILIIDGKIMFGVVDKKTVGSSSGGLIHV 445
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL--------------EDFSLSKAALWN 568
+ EKGP F ++Q ++ +GFS+ + E +++K +
Sbjct: 446 VTREKGPYVCASLFGNIQKVVNFWFLHNGFSIGIGDTIADEKTMREITESIAVAKQKVEE 505
Query: 569 IQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKS-STLGYLIDSKSD 625
+ KE QA H M+ + D ++ N R A+ LK + + ++ + S
Sbjct: 506 VTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRSAEVNLKDLNNVKQMVSAGSK 565
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q S GK + + HF + +Y G ++ +
Sbjct: 566 GSFINIAQMSACVG-QQSVEGKRIAFGFADRTLPHFSKD-----DYSPESKGFVENSYLR 619
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ L D+++ YDGT RN N IIQ
Sbjct: 620 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQ 678
Query: 746 FDYA 749
F Y
Sbjct: 679 FIYG 682
>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
24927]
Length = 1442
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 189/735 (25%), Positives = 315/735 (42%), Gaps = 95/735 (12%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEV 201
++ +Y+P PP C+ P +S ++ DL++ L ++ + +IR+ G P ++
Sbjct: 265 FLWQYMPAPPVCIR-PSVSQEDASNEDDLTVK-LAQITETSALIRAGLLKGIP-IQTLME 321
Query: 202 ESNDLQLAVGQYL-------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
+ +QL + QY+ +++GT K R + R Q + R K
Sbjct: 322 QWEWMQLQIAQYVNSDLPGVQLQGT-KPIRGICQRLKGKQG----------RFRGNLSGK 370
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL------- 307
FS R+VI+ D + ++ VP +A+ +T+ ERV +N LQELV N +
Sbjct: 371 RVDFSGRTVISPDPNLSIEQVAVPMLVAKNLTYPERVTDYNRGKLQELVRNGVDKYPGAN 430
Query: 308 CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ D L+ G++ T L G +V R + DGD V NR P+ HK S+ + V
Sbjct: 431 FVVKKDLQYKTWLKFGNRDKTAQELAIGDIVERHLEDGDVVLFNRQPSLHKLSILSHYVK 490
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD ++L PQ+ A+ E + L V+ L + NG +
Sbjct: 491 VRPWKTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLCTPRNGEPII 550
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-----PLPRPALSKARCSARWTALQI 479
D + + ++ K F D+ L MF ++ LP PA+ K A WT Q+
Sbjct: 551 AAIQDFITAAYLLSNKDNFFDRKSFATLCMFMVNGNEQIDLPPPAVIKP--EAMWTGKQL 608
Query: 480 LQSVLPPGFDS---------CGDR----------------YLIKKSEVLKGDFDRDTIPS 514
++ P S C D +I+ SEV+ G D+ T+ S
Sbjct: 609 FSVLIKPNKKSKVVLNLDAKCRDFKAVPGMAPDLCPNDGWLVIRGSEVMCGLMDKSTVGS 668
Query: 515 -VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ + I + G +E + + L L L GFS+ + D S + Q +
Sbjct: 669 GKKSSVFYVILRDYGADEAVAAMNRLAKLCARWLGNRGFSIGINDVSPGQKLQDLKQMHV 728
Query: 574 QALYS--------LLYHRMST-----QNELVDLQIENHIRHVKMLVAKFILK--SSTLGY 618
A Y R+ + ++ +I + V+ V + S
Sbjct: 729 MAAYKECDNLIDDFRLGRLEKAAGCDEETTLENKISGVLSKVRDKVGDICMSELSRMNSP 788
Query: 619 LIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY 676
LI + S S SK V Q +G Q+ GK + HF++ + P +K
Sbjct: 789 LIMANSGSKGSKINVSQMVACVGQQIIS-GKRVPNGFQDRSLPHFQK----NSKEPPSK- 842
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+ YD TVR
Sbjct: 843 GFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVR 902
Query: 737 NVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMK 796
N S ++QF Y + + +PV ++ N A D++ S +E+
Sbjct: 903 N-SSAGVVQFQYGGDNLDPVDMEGDAKPVNLVRTY---NHAENLTWDNNDPSLLPYEI-- 956
Query: 797 EILLCRVSFNNDPID 811
I +CR + D ++
Sbjct: 957 -IAMCRELLDFDELE 970
>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
Length = 863
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 156/635 (24%), Positives = 274/635 (43%), Gaps = 83/635 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 72 DLTFKLADVLKANINVQRLELDGSPQHVIAEFEAL-LQFHVATYMDNDIAGQPQALQKTG 130
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 131 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPIS 180
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V NI+ L E V N D LR + G L+ G
Sbjct: 181 IARTLSYPEIVTPFNIHRLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYG 240
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 241 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 300
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 301 HVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--YDQVM 358
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD---------SCGDR-YLI 497
M P +P PA+ K + WT Q+L +P G S D LI
Sbjct: 359 NMLYWIPNWDGVIPPPAVLKPK--PLWTGKQLLSMAIPKGIHIQRLESNLLSPNDNGMLI 416
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ + F ++Q ++ L +GFS+ +
Sbjct: 417 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFGNIQKVVNFWLLHNGFSIGIG 476
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D + + I+ + Q ++D Q +
Sbjct: 477 DTIADSETMKTVTTTIEEA------KTKVQEIILDAQRNKLEPEPGMTLRESFEHNVSRV 530
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 531 LNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFS 589
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G I+ + GL P E H+++ RE ++ ++ +E G
Sbjct: 590 DRTLPHFTKD-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 644
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 645 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 678
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 180/710 (25%), Positives = 305/710 (42%), Gaps = 94/710 (13%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGV 164
V ++ S V +LKRI +E + L Y D IL+ LP+PP + + D
Sbjct: 206 VERKQTLSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRG 218
S DL+ + + + R R+G+P E + LQ + Y + R
Sbjct: 266 SRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRA 324
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
T +S R + + S KA ++R + K FS+R+VIT D ++++GVP
Sbjct: 325 TQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 377
Query: 279 FEIAQRITFEERVNVHNINYLQELVD--------------------NKLCLTYSDGSSSY 318
+ IA +T+ E V +NI L+ELV+ +L L Y SS +
Sbjct: 378 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 437
Query: 319 SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 378
L G K V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 438 HLELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
Query: 379 CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM 438
P +ADFDGD +++ PQS +AEVLEL V K ++S + + + D LL + +
Sbjct: 488 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 547
Query: 439 FKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP-------- 486
K+ F+ K + M+ +P PA+ K WT Q+ ++P
Sbjct: 548 TKRDTFISKDVFMNILMWWEDFDGKVPAPAILKP--EPLWTGKQVFNLIIPKQINLIRYS 605
Query: 487 --------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFD 537
G + GD + I+K E+L G + T+ + ++ I+ E GP+ +F
Sbjct: 606 SWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAARKFLG 665
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE-------- 589
Q L+ L + FS+ + D + + I + I A + + +E
Sbjct: 666 HTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPG 725
Query: 590 --LVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
++D EN + K + +S+ L ++ + S + + Q +G
Sbjct: 726 RSMMD-SFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 784
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q + GK ++ HF + DL P ++ G ++ + GL P E H++
Sbjct: 785 QQ-NVEGKRIPYGFIDRTLPHFTKD---DLG-PESR-GFVENSYLRGLTPQEFFFHAMGG 838
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 839 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ--------LANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S+ ++ L++P LG KCE+C T+ +C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETC-TASMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFG++EL P++H
Sbjct: 77 PGHFGHLELAKPMFH 91
>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
Length = 882
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 190/716 (26%), Positives = 312/716 (43%), Gaps = 100/716 (13%)
Query: 104 DGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPD 159
D A R+ + EV+ L++IP++ K L G P++ +L LPVPP + P
Sbjct: 168 DRPAGRVPLNPREVRSRLEKIPDDDVKLL---GLDPKEARPEWMVLTVLPVPPIHVR-PS 223
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLE--- 215
I + D L +++ E +R + SG P+ E N LQ V Y++
Sbjct: 224 IVLETGIRAEDDLTHKLADIVRTNEKLRETLESGMPHSVIDEW-WNLLQYHVATYIDNEL 282
Query: 216 -----VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
R R + G++Q K + R K FS+R+VI+ D
Sbjct: 283 PKIPVARQRGGLGRPLK---GLAQ----RLKGKEGRFRGNLSGKRVNFSARTVISPDPNI 335
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-----------------KLCLTYSD 313
+NE+GVP EIA+ +T RV NI L++ V N K+ L ++D
Sbjct: 336 SINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVIDPRGRKIDLRFAD 395
Query: 314 GSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
S L+PG +V R + DGD V NR P+ H+ S+ A V V T +
Sbjct: 396 RKSIAEA---------LQPGWIVERHLKDGDIVLFNRQPSLHRMSIMAHIVRVLPGKTFR 446
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
+N L+C P +ADFDGD ++L P++ A+AE EL V+ +L+ G + + D +
Sbjct: 447 LNLLVCPPYNADFDGDEMNLHVPRTEEAQAEARELMLVQFHILTPRYGGVIIGGLQDYIS 506
Query: 434 SLKVMFKK---YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD- 489
++ K LD A +P P + + WT Q++ LP F
Sbjct: 507 GAYLLTSKATILTLDDVVDLLAAAKYEGEIPEPVILSPK--KLWTGKQLVSLFLPKDFTF 564
Query: 490 -----------SCGDRY-------LIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPE 530
+C D +IK E+L+G FD+ I + E ++ + E G +
Sbjct: 565 RGKAKISSGAFACSDELCWNDSYIVIKNGELLEGVFDKKAIGAEQTESVLHQLTKEYGFD 624
Query: 531 EVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI-------QKEIQALYSLLYH- 582
V D+L + + + GF+++LED +L A +I +K++Q L
Sbjct: 625 YVRRLMDTLFKMFLRYIEKHGFTMTLEDVALPPEAKEHIREILKEAEKKVQELIEQYREG 684
Query: 583 RMS-----TQNELVDLQIENHI----RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQ 633
R+ T E ++L+I + R ++ VA + + + + + + + Q
Sbjct: 685 RLEPVPGRTLEETLELKIIEALTDARRKIEQYVADVLDPFNNVFIMARTGARGNELNITQ 744
Query: 634 QAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEM 693
A LG Q + RG+ S+ HF+ P DL P A+ G + F+ GL P E
Sbjct: 745 MAAILG-QQTVRGERISRGYRGRYLPHFK---PGDLG-PAAR-GFVYHGFYDGLTPTEVF 798
Query: 694 THSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+ RE +V ++ S+ G + + L+ L+D+ + YDGTVR + +++Q Y
Sbjct: 799 FHAAGGREGLVDTAVRTSQSGYMQRRLINALQDLRVEYDGTVR-LPDGTLVQIKYG 853
>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
Length = 1387
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 197/706 (27%), Positives = 304/706 (43%), Gaps = 96/706 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVS-TMSSD 170
EV + +RIP+E + L P+ G+ IL +PVPP C+ +SD S T D
Sbjct: 222 EVLHLFERIPDEDVQFLVMN---PEHGHPKDMILTRVPVPPVCIRPSVVSDLKSGTNEDD 278
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEV--ESNDLQLAVGQYL--EVRGTAKSSRDV 226
L++ + + V I++ SG +SQ + + + LQL Y+ E+ G + +
Sbjct: 279 LTMKLTEIVFLNDVIVKHRLSGA---KSQMILEDWDFLQLQCALYINSELSGIPLNMQPK 335
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
G+ Q K + R K FS R+VI+ D R++++GVP +A+ +T
Sbjct: 336 KPSRGLVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPELVAKILT 391
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQ------------ 334
F RVN NI+ +++LV N + ++Y +GS+ FL+ G
Sbjct: 392 FPTRVNEANIDLMRQLVRNGADV---HPGANYLQEKGSELKKFLKYGNRESLARNLKLGD 448
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
++ R +MD D V NR P+ HK S+ + T + N +C P +ADFDGD ++L
Sbjct: 449 LIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILPHRTFRFNECVCTPYNADFDGDEMNLH 508
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLA 453
PQ+ A+AE L + L++ NG L + D + ++ K F D+A T Q+
Sbjct: 509 LPQTEEARAEAWILMGNKFNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMV 568
Query: 454 MFALS--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY-- 495
L+ LP P + K +A W+ QI +L P + G Y
Sbjct: 569 ASMLAGDEVNMVIKLPPPCIQKP--AALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSK 626
Query: 496 ------------LIKKSEVLKGDFDRDTI--PSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
L++ SEVL G D+ TI S IN I + + G + ++ L
Sbjct: 627 KNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKIN-IFYVLLRDYGEDFAIQAMWKLCR 685
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIENH- 598
+ + GFS+ + D + K L Q + YS Y R+ T +L L N
Sbjct: 686 VASYYMMNRGFSIGIGDVTPGKTLLKEKQTLLDTGYSKCDEYIRLLTLGQLPCLPGCNEE 745
Query: 599 -------------IRHVKMLVAKFILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLS 643
IR V K L S L+ SKS S S + Q +G Q
Sbjct: 746 ESLESKILKELSGIRDQAGEVCKKELHPSN-SPLVMSKSGSKGSYINISQMIACVGQQAL 804
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
+ GK + HF+R P AK G + F+ GL P E H++ RE +
Sbjct: 805 N-GKRVPNGFEDRSLPHFKR----HSKIPAAK-GFVSNSFYSGLTPTEFFFHTMGGREGL 858
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
V ++ +E G + + L+ L D+ YD TVRN + IIQF Y
Sbjct: 859 VDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRN-STGEIIQFVYG 903
>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
Length = 984
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 145/538 (26%), Positives = 243/538 (45%), Gaps = 37/538 (6%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP +A+ +T+ E V +NI+ L +LV N
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKN 310
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ +DG G L+ G V R I+DGD + NR P+ HK S
Sbjct: 311 GPNDHPGAKYVIRADGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKES 370
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AEV +L V ++SS
Sbjct: 371 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSS 430
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + F+ K + ++ +P+PA+ K R W
Sbjct: 431 QRNGPLMGIVQDTLCGTYKMCRRDVFMTKEAVMNILLWVPDWDGVIPQPAIIKPR--PMW 488
Query: 475 TALQILQSVLPP-----------GFDSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QIL V+P GF + D I E++ G D+ + + ++
Sbjct: 489 TGKQILSLVIPAGLNYMKLDETEGFTALTDEGQFIHGGELMFGLLDKKAVGAATQGVIHL 548
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
IF E G + + FF+ Q ++ L +GFS+ + D + + I+ + A +
Sbjct: 549 IFNELGSDAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTINRIKTVVNAQKQEVEE 608
Query: 583 --RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFL 638
+ + NEL L N + V+ + K+ + +S V+ +Q A G
Sbjct: 609 ITQSAQLNELESLPGMNVRDTFESKVSNALNKAREEAGKVTEESLKDVNNAIQMARSGSK 668
Query: 639 G--LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY-----GLIKGCFFHGLDPYE 691
G + +S + VE F Y ++ Y G ++ + GL P E
Sbjct: 669 GTNINISQMTAVVGQQSVEGKRIPFGFKYRSLPHFAKDDYSPESRGFVENSYLRGLTPTE 728
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 729 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYG 785
>gi|300712256|ref|YP_003738070.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|448295949|ref|ZP_21486010.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|299125939|gb|ADJ16278.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|445582672|gb|ELY37012.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
Length = 986
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 175/693 (25%), Positives = 295/693 (42%), Gaps = 84/693 (12%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDIS-DGVSTMSS 169
++++ + IP+E + L G P+ IL LPVPP + P I+ D
Sbjct: 250 SDIRDWFEDIPDEDIEVL---GMNPEKSRPEWMILTVLPVPP-VTARPSITLDNGQRSED 305
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ ++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 306 DLTHKLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH--- 361
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ + R K FS+R+VI+ D +NE+G+P +A
Sbjct: 362 ----RSGRPLKTLSQRLKGKDGRFRNSLSGKRVNFSARTVISPDPTLSLNEVGIPKHVAN 417
Query: 284 RITFEERVNVHNI-----------------NYLQELVDNKLCLTYSDGSSSYSLREGSKG 326
+T V NI NY++ +L +T + + L + +
Sbjct: 418 EMTQTMVVTERNIEQARRYVANGPNEHPGANYVRRPDGRRLKITEKNCEALAGLDDEAAE 477
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L PG V+R ++DGD V NR P+ H+ S+ A V V T ++N ++C P +ADF
Sbjct: 478 IQSLAPGWEVNRHLVDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADF 537
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFL 444
DGD ++L QS A+AE L V++Q+LS G + D + L ++ + F
Sbjct: 538 DGDEMNLHALQSEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGLYLLTHENPQFN 597
Query: 445 DKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKK 499
+ L ++ LP P + WT I +LP GFD S GD I+
Sbjct: 598 ETQALDLLRGTSVDGLPEPD-GEDESGEYWTGRTIFSQLLPDGFDLEFTSSAGDAVTIED 656
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
+L+G D D + + EIV + + F + + L M + GFS+ ++D
Sbjct: 657 GTLLEGTVDEDGVGAFGGEIVDQLVKDHSETRARVFINEVASLAMRAIMHFGFSIGIDDE 716
Query: 560 SLSKAALWNIQKEIQALYSLLYHRMST--QNELVDLQIENHIRHVKMLVAKFILKSSTLG 617
S+ AA I + IQ Y + + T +L L ++M + + TLG
Sbjct: 717 SIPDAAGEQIDEAIQNAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQ------TLG 770
Query: 618 YLIDSKSDSA---------------------VSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
DS D A + + Q AG +G Q RG+ ++
Sbjct: 771 KARDSAGDIAEDHFADDNPAVIMAESGARGSLLNLTQMAGCVGQQAV-RGERINRGYEGR 829
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
SH++ + + +G ++ + GL P E H++ RE +V ++ S+ G L
Sbjct: 830 TLSHYQ-----EGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLVDTAVRTSKSGYL 884
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L ++ YDGTVR+ S+ I+QF++
Sbjct: 885 QRRLINALSELETQYDGTVRD-TSDKIVQFEFG 916
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 211/899 (23%), Positives = 356/899 (39%), Gaps = 190/899 (21%)
Query: 9 ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLG----LPLEFGKCES---CG 61
I+ +I I+FGL + +EI +S+ I H + N F + L+ G E C
Sbjct: 5 IVTKRISSIQFGLFSPEEIRKSSV--VQIIHPETMENGFPKSGGLIDLKMGTTERAFLCS 62
Query: 62 TSEPGK--CEGHFGYIELPIPIYHPSHISELK-----LTMYAFQLQIKNDGVAQRL---- 110
+ E C GHFG+IEL P++H +++++K + Y +L+I + + L
Sbjct: 63 SCEKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKKDLNFVW 122
Query: 111 ----LSSCCE---------------------------------------------VKEML 121
S CE V +L
Sbjct: 123 NISKTKSVCEGEIGENGFTGCGNKQPVIKKEGMSLIAFMKGEEESDGKVILNGERVHNIL 182
Query: 122 KRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
K+I E L F + + IL L VPP + + +G+ DL+ + V
Sbjct: 183 KKIVNEDAVFLGFDQKFTKPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVK 242
Query: 181 KQVEIIRSSRSGTPNFESQEVES-----------NDLQLAVGQYLEVRGTAKSSRDVDAR 229
+ + G P ++ E ND+ GQ ++ + + + + AR
Sbjct: 243 ANTYLKKYELEGAPGHVVRDYEQLLQFHIATMIDNDIS---GQPQALQKSGRPLKSISAR 299
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
K ++R + K FS+RSVIT D V E+GVP EIA+ TF E
Sbjct: 300 L----------KGKEGRVRGNLMGKRVDFSARSVITPDPNISVEEVGVPSEIAKIHTFPE 349
Query: 290 RVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG--------SKGHTFLRPGQVVHRRIM 341
+ NI+ L +LV N ++Y +R ++G L G VV R +
Sbjct: 350 IITPFNIDRLTKLVSNG---PNEYPGANYVIRNDGQRIDLNFNRGDIKLEEGYVVERHMQ 406
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
DGD V NR P+ HK S+ A V V + T ++N P +ADFDGD ++L PQS +
Sbjct: 407 DGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNS 466
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFA---- 456
KAE+ EL V KQ+LS + + + D+L +L++ + F D+ T QL
Sbjct: 467 KAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRETMQLLYSVNINN 526
Query: 457 -----------------------------LSPLPRPALSKARCSARWTALQILQSVLP-- 485
+ L PA+S + WT QIL +LP
Sbjct: 527 YEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILNFPAISYPK--KLWTGKQILSYILPNT 584
Query: 486 -----------PGFDSCGDRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
++ D Y +I+ E+L G D+ + S ++ I + GP+ V
Sbjct: 585 IYNGKSNEHNEEDLENVEDSYVIIRNGEILSGIIDKKAVGSTQGGLIHIIANDFGPDRVT 644
Query: 534 EFFDSLQPLLMENLF---ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNEL 590
FFD Q ++ NL+ + FS+ + D K + +Q+ I+ + NE+
Sbjct: 645 CFFDDAQKMM--NLYFATINAFSIGIGDAIADKETMSQVQRSIETAKEQV-------NEI 695
Query: 591 VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG-----LQLSDR 645
+ +N + + + + +S + Y+++ D + + + F + +
Sbjct: 696 IVKAQKNKLERLPGMSMRESFESQ-VNYILNKPRDISGASASKSLSFCNNMRTMVLAGSK 754
Query: 646 GKFYSKTLVEDIASH----FERIYPMDLNYPT------AKY-----GLIKGCFFHGLDPY 690
G F + + V +RI P NY + A Y G ++ + G+ P
Sbjct: 755 GSFINISQVTACLGQQNVEGKRI-PFGFNYRSLPHFSKADYSGKSRGFVENSYVKGITPE 813
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ + +E G + + L+ + D + D +VR I Q++Y
Sbjct: 814 EFFFHAMGGREGLIDIAIKTAETGYIQRRLVKAMEDATVTLDRSVRG-ADGFIYQYEYG 871
>gi|76800712|ref|YP_325720.1| DNA-directed RNA polymerase subunit A' [Natronomonas pharaonis DSM
2160]
gi|76556577|emb|CAI48148.1| DNA-directed RNA polymerase subunit A' (subunit A) [Natronomonas
pharaonis DSM 2160]
Length = 1059
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 180/712 (25%), Positives = 307/712 (43%), Gaps = 68/712 (9%)
Query: 87 ISELKLTMYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKLAGKGYFPQ 140
I E+ + AF + +N LLS + V++ + IP+E + L G P+
Sbjct: 298 IGEVMSSSGAFGGRFENAPAPDFLLSYSGDKLMPSNVRDRFENIPDEDIETL---GIDPE 354
Query: 141 ----DGYILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN 195
+ IL LPVPP + P I+ D DL+ ++ + + + +G P
Sbjct: 355 RSRPEWMILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQ 413
Query: 196 FESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
+++ LQ V ++ E+ GT + S P T L+ F
Sbjct: 414 LIIEDLWEL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRG 465
Query: 254 KGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN---- 305
SG FS+R+VI+ D +NE+GVP +A +T VN N++ + V N
Sbjct: 466 SLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQTMIVNERNLDDARRYVANGPES 525
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFL----RPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 361
Y L+ K L PG V R ++DGD + NR P+ H+ S+ A
Sbjct: 526 HPGANYVKRPDGRRLKVTEKNCEELAEKVNPGWEVARHLIDGDIIIFNRQPSLHRMSIMA 585
Query: 362 LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 421
V V T ++N +C P +ADFDGD +++ Q+ A+AE L V++Q+LS G
Sbjct: 586 HEVVVMPYKTFRLNTTVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFG 645
Query: 422 NLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQI 479
+ D + L ++ + F + L ++ LP P WT I
Sbjct: 646 ENIIGAIQDHISGLYLLTNQNPKFNETQALDLLRATSIDELPDPDGQDEEGVDYWTGRSI 705
Query: 480 LQSVLPPGF-----DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
+LP G S GD IK +++ G D D + + EIV +I
Sbjct: 706 FSELLPDGLSLEFTSSAGDTVEIKDGQLISGTIDEDAVGAFGGEIVDTICKVYDNTRARV 765
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST--QNELVD 592
F + + L M ++ GFS+ ++D S+ + A IQ+ I Y + + T + EL
Sbjct: 766 FVNEVATLAMRSIMHFGFSIGIDDESIEREAEEQIQEAIDNAYERVETLIETYRRGELES 825
Query: 593 LQIENHIRHVKMLVAKFILKSSTLG---------------YLIDSKSDSAVSKVVQQAGF 637
L ++M + + + K+ + +S + ++ + Q AG
Sbjct: 826 LPGRTVDETLEMKIMQTLGKARDSAGDIADDHFDDDNPAVVMAESGARGSMLNLTQMAGC 885
Query: 638 LGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSI 697
+G Q RG+ ++ + SHF+ P DL+ +G ++ + +GL P E H++
Sbjct: 886 VGQQAV-RGERINRGYEDRTLSHFK---PNDLS--ADAHGFVENSYRNGLTPKEFFFHAM 939
Query: 698 STREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE +V ++ S+ G L + L+ L ++ YDGTVR+ S++++QF++
Sbjct: 940 GGREGLVDTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTVVQFEFG 990
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 21 LATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIP 80
++ K I + D L +P LG+ +C++CG G C GHFG+IEL P
Sbjct: 25 MSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCG-KHSGSCNGHFGHIELAAP 83
Query: 81 IYHPSH 86
+ H H
Sbjct: 84 VIHVGH 89
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 228/867 (26%), Positives = 355/867 (40%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H H+ E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG VV R + D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTD 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T Q++ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQVVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ +IQ Y
Sbjct: 826 ALSDLRAEYDGTVRSLYG-EVIQVAYG 851
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 240/543 (44%), Gaps = 50/543 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V NI L ELV N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPRSIARTLTYPETVTPFNIAKLHELVKN 408
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D + LR + G L G V R I+ GD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYVIRDDGTRIDLRHHKRAGEIQLAYGWKVERHIVSGDFIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV++L V ++S
Sbjct: 469 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVMQLCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P+PA+ K R RW
Sbjct: 529 QRNGPLMGIVQDTLCGIYKMCHRDVFLTKEMVMNILLWVPDWDGVIPQPAILKPR--PRW 586
Query: 475 TALQILQSVLP------PG-----FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T Q+L +P PG D G +I E++ G F++ + + I+ ++
Sbjct: 587 TGKQLLSLAIPDINLVKPGKTHAPIDDSG--VVIIGGELMYGLFNKKIVGASSGGIIHTV 644
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
+ EKG E + FF+ Q ++ L GFS+ + D I++ I +
Sbjct: 645 YNEKGWEAAVGFFNGSQRIVNYWLLHHGFSIGIGDTIPDALTTAKIEEAIDEQKEEVARI 704
Query: 584 M--STQNEL---------------VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDS 626
+TQ++L V + + + + K + K + + S S
Sbjct: 705 TDDATQDKLDPLPGMTKRETFESKVSVCLNKARDNAGAVTEKSVAKCNNAIAMAASGSKG 764
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q S GK HF + +Y A G ++ + G
Sbjct: 765 STINISQMTALVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPAARGFVQNSYLRG 818
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + ++QF
Sbjct: 819 LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQF 877
Query: 747 DYA 749
Y
Sbjct: 878 VYG 880
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
I+FGL EI S++ ++ A Q L +P LG C +CG +
Sbjct: 19 IQFGLLDPAEIQEMSVAHIIYPETMDEAKQRPREGGLNDPKLGSIDRAYSCATCGENM-Q 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 78 ECPGHFGHIELHTPVFHVGFINKIK 102
>gi|329132885|gb|AEB78333.1| RNA polymerase II largest subunit [Diplonema sp. ATCC 50224]
Length = 1010
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 148/565 (26%), Positives = 247/565 (43%), Gaps = 63/565 (11%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R+ + K FS+R+VI GD+ ++E+GVP IA +TF ERV +N + L+ LV N
Sbjct: 253 RVRSNLMGKRVDFSARTVIGGDSQIGMDEVGVPLSIAANMTFPERVTSYNQDILKVLVAN 312
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ DG+ FL+PG +V R ++ D V NR PT H+ S
Sbjct: 313 GPDKYPGAKFIIREDGTRINLAFRRKDSELFLQPGYIVERHVLTNDVVLFNRQPTLHRMS 372
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V T ++N P +ADFDGD ++L PQS+ +K+E+ E V K ++S
Sbjct: 373 MMGHRARVMPFCTFRLNLSATSPYNADFDGDEMNLHVPQSVLSKSELQEFMMVPKNIISP 432
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF---ALSPLPRPALSKARCSARW 474
+ + + + D+LL + ++ K+ FLDK F M + +P PA+ K W
Sbjct: 433 KSNSPVMGIVQDSLLGIHLLTKRSTFLDKQFMMNAVMHIPTMPAQIPIPAILKPEM--LW 490
Query: 475 TALQILQSVLPP-GFDSCG-------DRYL--------IKKSEVLKGDFDRDTIPSVINE 518
T Q+ VLPP F + DR+L I+K + G D+ ++ S N
Sbjct: 491 TGKQLFSLVLPPVNFTATSNEDISEPDRFLPLADTKVRIEKGNLHTGIIDKKSVGSSENS 550
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS 578
+V I E P+ + + +Q + L GFSV ++D A N +K IQ +
Sbjct: 551 LVHVIHNEFSPDWARDLINGIQRITAFYLINKGFSVGVQD----TVADVNTKKMIQEIIR 606
Query: 579 LLYHRM----------------STQNELVDLQIENHIRHVKMLVAKF----ILKSSTLGY 618
Y + T E + I + + K + +S++
Sbjct: 607 RSYDSVDELCNKAQEGLKRQPGKTVKETFEANINKILNKTREDAGKRAQQSLTRSNSFKV 666
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
++ + S + + Q +G Q + GK + HF + +Y G
Sbjct: 667 MVSAGSKGSYLNISQITAVVG-QQNVGGKRIPYGFRKRTLPHFTQD-----DYGPESRGF 720
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H RE ++ ++ +E G + + L+ L D+ + YD TVR+
Sbjct: 721 VQNSYLEGLTPSEFFFHMSGGREGLIDTACKTAETGYIQRKLVKALEDLYVGYDATVRD- 779
Query: 739 CSNSIIQFDY---AVNARKSHSLFP 760
++QF Y ++ K SL P
Sbjct: 780 AQGRVVQFLYGEEGYDSTKMESLRP 804
>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
Length = 872
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 153/631 (24%), Positives = 277/631 (43%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHKLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S+ + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAELSQICAVPLQIVSAQSNKPVMGIVQDTLCGIRKMTLRDSFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + W+ Q+L +P G FD +
Sbjct: 361 NMLYWIPNWDGVIPPPAIVKPK--PLWSGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKG + + F ++Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSAIQKVVNFWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYH-RMSTQNELVDLQ---------------IENHI 599
+ D + + IQ + + Q+ +D + + N
Sbjct: 479 IGDTIADSETMRTVTTTIQEAKDKVQEIILDAQSNKLDPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
Length = 872
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 156/635 (24%), Positives = 273/635 (42%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADIIKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YEQVM 360
Query: 453 AMFALSPL---PRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY-------LI 497
M P P + + W+ QIL +P G FD D LI
Sbjct: 361 NMLYWIPNWDGVIPPPAIIKPKPLWSGKQILSMAIPKGIHLQRFDDGNDMLSPKDKGILI 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKG + + F S+Q ++ L +GFS+ +
Sbjct: 421 VDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNYWLLHNGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D K + ++ IQ + Q ++D Q +
Sbjct: 481 DTIADKDTMRDVTTTIQEA------KQKVQEIIMDAQQNRLEPEPGMTLRESFEHNVSRV 534
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 535 LNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFA 593
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 594 DRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 649 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|342886359|gb|EGU86224.1| hypothetical protein FOXB_03263 [Fusarium oxysporum Fo5176]
Length = 1404
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 169/704 (24%), Positives = 299/704 (42%), Gaps = 99/704 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I ++LP PP C+ P ++ ++ D++ + V I + +
Sbjct: 207 GLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLADIVWVSGMIRSALQK 265
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G K++R R Q
Sbjct: 266 GSP-VQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKATRGFCQRLKGKQG--------- 315
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ ERV HN+ L++ V
Sbjct: 316 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVQRHNLEKLRQCVK 374
Query: 305 N--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTT 354
N + + +G SL+ G++ + L+ G +V R + D D V NR P+
Sbjct: 375 NGPDIWPGAQRVIKSDEGGYLQSLKFGNREYIARDLKFGDIVERHLEDNDIVLFNRQPSL 434
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HK S+ + V T ++N +CGP +ADFDGD ++L PQ+ A+AE + L ++
Sbjct: 435 HKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHN 494
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-----PLPRPALSKA 468
L + NG + D + + ++ K F D+ L M + +P PA+
Sbjct: 495 LATPKNGEPVIAATQDFITAAFLLSSKDRFFDRKTFTYLCMHMMDGKTHLDMPPPAIIAP 554
Query: 469 RCSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVL 503
+ + WT Q+ ++ P DS C D +++ SEV+
Sbjct: 555 Q--SLWTGKQLFSMLMRPNKDSPVKVNLDAKCRAYKARPGQCPDMDPNDGWLVVRNSEVM 612
Query: 504 KGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
G D+ T+ + + I I + GP+E + + L L L GFS+ + D +
Sbjct: 613 CGRMDKSTVGTGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARQLTNRGFSIGVGDVFPT 672
Query: 563 KAALWNIQKEIQALYSLLYHRMS-----------------TQNELVDLQIENHIRHVKML 605
++ + KE + L ++ Y + Q + ++ + + V+
Sbjct: 673 ES----LNKEKEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQ 728
Query: 606 VAKFILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+ + S LI +KS S S V Q +G Q+ G + + HF
Sbjct: 729 AGSYCVDTLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIG-GSRVADGFQDRTLPHF 787
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ + P +K G +K F+ GL P E + H++S RE +V ++ +E G + + LM
Sbjct: 788 HK----NARQPPSK-GFVKNSFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLM 842
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + EPV
Sbjct: 843 KSLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAEPV 885
>gi|424814017|ref|ZP_18239195.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalina sp. J07AB43]
gi|339757633|gb|EGQ42890.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalina sp. J07AB43]
Length = 824
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 192/804 (23%), Positives = 338/804 (42%), Gaps = 108/804 (13%)
Query: 25 KEICTASISDC-SISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYH 83
KEI A + D + +P LG+ C++CG + +C+GHFG I L P+ H
Sbjct: 23 KEIDKAEVYDADGYPVEGGVMDPALGVIDPGMTCQTCG-GQMRECQGHFGKITLSKPVVH 81
Query: 84 PSHISELKLTMYAFQLQ--------IKNDGVAQRLLSSCCE------------------- 116
+ +++ + + +KN+ R + E
Sbjct: 82 SLYAKKVRNLLRFTNINENGNVSCLLKNENKPLRKSNRLTEDPETGEEVPDIDFDKPYTY 141
Query: 117 -----------VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
+KE K+IP+E KK+ +G P+D I+ ++PVPP + P I+
Sbjct: 142 YEDGDKVQPSEIKERFKQIPDEIAKKIGVEGCRPED-LIITHVPVPPVTMR-PSITLETG 199
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLA-VGQYLEVRGTAKSSR 224
S D K V++IR ++ N E +E+ D + + + L+
Sbjct: 200 ERSED------DITHKLVDVIRINKRLQNNIE---IEAPDFIIDDLHELLQYHVATLFYN 250
Query: 225 DVDARFGVSQDPNSTTKAWLEKM-------RTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
D+ + K+ +E++ R I K FS+R+VI+ D +NE+GV
Sbjct: 251 DMSNVPPARHRSGRSLKSLIERVQGKQGRFRQNLIGKRVNFSARTVISPDPNIGINEVGV 310
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF 329
PF IA++++ E V N +++ ++N S + +
Sbjct: 311 PFMIAKKLSIPEEVTERNFEEMKKRIENGPDEHPGANYVYPPSGKRKRITEENQEEILEE 370
Query: 330 LRP--GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
+ P G V R + DGDTV NR P+ H+ S+ A V V T ++N +C P +ADFD
Sbjct: 371 VAPDAGWKVERHLNDGDTVLFNRQPSLHRMSIMAHEVRVLPYRTFRLNLNVCAPYNADFD 430
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKA 447
GD ++L PQ+ A+AE EL V++ + S G + + D + L ++ + D+
Sbjct: 431 GDEMNLHVPQTEEARAEAEELMKVQEHIKSPKMGGPIVGMLQDYVSGLYLLTQP---DRT 487
Query: 448 FTQQLAMFALSP-------LPRPALSKARCSAR-WTALQILQSVLPPGFDSCGDRYLIKK 499
+++ A L+ LP +K S + +L I + + + ++ +IK+
Sbjct: 488 VSREKAFNLLTEAGEYEANLP----NKDEISGKELVSLFIPEDISLTINEGEDNQVVIKE 543
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E+++G D D + EI+ + E G ++V EF + + + L GFS+ LED
Sbjct: 544 GELVEGVLDEDALGDYGGEIIQQLSIEYGSDKVTEFLNRVSRVGAIFLTQRGFSIGLEDL 603
Query: 560 SLSKAALWNIQ----KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKM----------- 604
+ + A IQ + +Q LL S E + + R +++
Sbjct: 604 EVPEEATEQIQDMIEETVQDAEELLDEYESGDMEAITGKTVEETREIRITKTLNEVFADI 663
Query: 605 --LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+V+ + S+ + DS + ++ V AG LG Q S R + + SHF+
Sbjct: 664 GDMVSDNFSEDSSAYVMADSGARGSMQNVTTMAGLLG-QNSVRDQRIQRGYKNRTLSHFK 722
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ G + GL+P E H +S R+ ++ S G +++ +
Sbjct: 723 -----EGEMSPRSRGFVSSSILDGLEPEEMFFHQMSQRKALMDKSLRTKTSGYMYRRVAN 777
Query: 723 VLRDVVICYDGTVRNVCSNSIIQF 746
L+D+ + YD +VRN IIQF
Sbjct: 778 ALQDLNVEYDQSVRN-AQGDIIQF 800
>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba
livia]
Length = 1375
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 213/804 (26%), Positives = 333/804 (41%), Gaps = 124/804 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 179 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGK---PSD- 234
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 235 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 294
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 295 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 343
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN++++LV N +
Sbjct: 344 KRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGA 403
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 404 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 461
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 462 IARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 521
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP PA+ K
Sbjct: 522 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKP--VTL 579
Query: 474 WTALQILQSVLPP-------------GFDSCG--------DRYL-IKKSEVLKGDFDRDT 511
WT Q+ +L P G CG D Y+ I+ SE++ G D+ T
Sbjct: 580 WTGKQVFSLILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGT 639
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 640 LGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 699
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 700 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 759
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 760 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 812
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 813 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 867
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + ++ EP+ Y + + S
Sbjct: 868 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCRSEPALS 926
Query: 788 SN----NSWELMK--EILLCRVSF 805
N S +MK E L CR SF
Sbjct: 927 KNELVLTSESIMKKNEFLCCRDSF 950
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 226/867 (26%), Positives = 356/867 (41%), Gaps = 146/867 (16%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ + +P LG+ KC +CG
Sbjct: 3 EKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPS---HISE-LKLT-MYAFQLQIKND----------GV 106
+ G C GHFG+IEL P+ H HI E LK T +++I D +
Sbjct: 63 NTL-GNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 107 AQRLLSSCCEVKEMLKR-------------------------------------IPEETR 129
+R S+ + E +K+ P + R
Sbjct: 122 KKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P + IL LPVPP + + + DL+ ++
Sbjct: 182 ERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVD 241
Query: 178 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQD 235
V + S +G P +++ + LQ V Y E+ G S S
Sbjct: 242 IVRINERLKESIDAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPSKHR-------SGR 293
Query: 236 PNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
P T L+ F SG FSSR+VI+ D ++E+GVP IA+ +T ER+
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERI 353
Query: 292 NVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIMD 342
NI L++ V N + DG +++ + + L PG ++ R ++D
Sbjct: 354 TPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLID 413
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 414 GDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAI 473
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFA--LSP 459
AE E+ V K +++ G + A D + + + K L K QQ+ A
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKID 533
Query: 460 LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG-DFDRDTIPSVINE 518
L PA+ R +T Q++ + LP F+ G + + K D D+ + N
Sbjct: 534 LGEPAILAPR--EYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG 591
Query: 519 IVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DGFSVSLEDF 559
I+ F+K PE +L E+ D LM+NLF GF++ LED
Sbjct: 592 ILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDV 651
Query: 560 SLSKAALWNIQKEIQ----ALYSLLYHRMSTQNELV-----DLQIENHI-------RHVK 603
SL I EI + +L+ + + E + + +EN+I R
Sbjct: 652 SLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTA 711
Query: 604 MLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+A L Y++ + + +V + Q A LG Q S RG+ + + HF+
Sbjct: 712 GDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLG-QQSVRGERIKRGYMTRTLPHFK 770
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P D++ P A+ G I F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 771 ---PYDIS-PEAR-GFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLIN 825
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ YDGTVR++ ++Q Y
Sbjct: 826 ALSDLRAEYDGTVRSLYG-EVVQVAYG 851
>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 886
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 215/885 (24%), Positives = 354/885 (40%), Gaps = 173/885 (19%)
Query: 8 TILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGK----------- 56
T + +I I+FG+ + +EI S++ S G P++ G
Sbjct: 3 TPVPTRISAIKFGILSPEEIRKMSVTTIITSEVYDND----GAPIDGGVMDRRLGAIEPR 58
Query: 57 --CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGVAQR 109
C CG + C GHFG+IEL P+ H S + + + + +++IK D +R
Sbjct: 59 EVCPVCGNTRES-CPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEDE-RKR 116
Query: 110 LLSSCCEVKEM-----LKRIPEETRKKLAGKGYFP----------------------QDG 142
L +KE+ +KR+ E R+K A P ++G
Sbjct: 117 YLELLNSLKELGLEYLVKRLHEYIRRKAAATQRCPHCGAKQYRIRLEKPHSFYEDRGEEG 176
Query: 143 YI-----------------------------------LEYLPVPPNCLSVPDISDGVSTM 167
Y+ L LPVPP + P I
Sbjct: 177 YVKLNPIEVRARLEKILDEDVRLLGGDPIDARPEWMVLTVLPVPPRSVR-PSILLETGIR 235
Query: 168 SSDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGTA---KSS 223
S D L +++ +R SG PN ++ E LQ V Y +
Sbjct: 236 SEDDLTHKLVDIIRINNRLREHIESGAPNAIIED-EWELLQYHVTTYFDNEAPGIPVARH 294
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R G++Q + +R K FS+R+VI+ D +NE+GVP +A+
Sbjct: 295 RSGKVLKGLAQRLKGKEGRFRGNLRG----KRVDFSARTVISPDPNISINEVGVPEVVAK 350
Query: 284 RITFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKG 326
+T ERV NI ++ LV N ++ L Y D +
Sbjct: 351 ILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIRPDGRRISLKYVDRKAMAET------ 404
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L PG +V R + DGD V NR P+ H+ S+ A V V T ++N L+C P +ADF
Sbjct: 405 ---LAPGFIVERHLRDGDIVLFNRQPSLHRISIMAHVVRVLPYKTFRLNLLVCPPYNADF 461
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLD 445
DGD ++L PQS A+AE L VEK +L+ G + D + + + K L
Sbjct: 462 DGDEMNLHVPQSEEARAEARMLMLVEKHILTPRYGGPIIGGLQDYISGAFLLTSKSTLLT 521
Query: 446 KAFTQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFD-------------S 490
+ +L A LP PA+ K + WT Q++ LP F+
Sbjct: 522 REDVIELLGVAGYRGKLPEPAILKPK--QYWTGKQLISLFLPDDFNYKRPAKMAGATALR 579
Query: 491 CGDR-------YLIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPL 542
C D ++K +L+G D+ +I E ++ + E G + F D + +
Sbjct: 580 CIDEDCPHDSIVIVKNGVLLEGVLDKASIGREEPESLIHWLVKEYGEDIARLFMDYVYKM 639
Query: 543 LMENLFADGFSVSLEDFSL----SKAALWNIQKEIQALYSLL--YHR------------M 584
+ GF++ L K L I+++ + +Y L+ YHR
Sbjct: 640 FLRFAEKYGFTMGYSHLLLPPEAKKRVLEIIEEKKKEVYELIEKYHRGELEPRPGRTIEE 699
Query: 585 STQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
+ ++E++DL + + V + + S+ + + + + + Q A LG Q +
Sbjct: 700 TLEDEIIDLLSKKLLDDVADTIIPYFKLSNPVIIMARTGARGNPINLTQMAALLG-QQTI 758
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
RG+ ++ + HF+ P DL P A+ G + F GL+P E H+ + RE +
Sbjct: 759 RGRRITRGYMHRTLPHFK---PGDLG-PEAR-GFVAHGFVDGLNPIEVFFHAAAGREGLT 813
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ S+ G + + L+ L+D+ + YDGTVR + + I+QF Y
Sbjct: 814 DTAVRTSQSGYMQRRLINALQDLRVEYDGTVR-LPTGEIVQFAYG 857
>gi|113957452|gb|ABI49113.1| RNA polymerase II largest subunit [Pseudocyphellaria anomala]
Length = 997
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 244/543 (44%), Gaps = 48/543 (8%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 310
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + HK S
Sbjct: 311 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIXXXXXXXHKES 370
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 371 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 430
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ LP+PA+ K R +W
Sbjct: 431 QRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWGGVLPQPAILKPR--PKW 488
Query: 475 TALQILQSVLPPGFD-----SCG------DRYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
T QI+ V+PPG + S G D L+ E++ G F++ ++ + I+ I
Sbjct: 489 TGKQIISLVVPPGLNLSRSSSEGFSPLNDDGLLVSGGELMYGLFNKKSVGATSGGIIHII 548
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH- 582
F EKGPE + FF+ Q ++ L +GFS+ + D + + I+ + +
Sbjct: 549 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNKQKEDVAEI 608
Query: 583 -RMSTQNELVDLQIENHIRHVKMLVAKFILKS---------------STLGYLIDSKSDS 626
R +T+N+L L N + V+K + K+ + + S S
Sbjct: 609 TRSATENDLEPLPGMNVRETFESKVSKALNKARDDAGTVTEESLKDLNNATQMARSGSKG 668
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q S GK HF + +Y G ++ + G
Sbjct: 669 STINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD-----DYSPESRGFVENSYLRG 722
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN + I+QF
Sbjct: 723 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQF 781
Query: 747 DYA 749
Y
Sbjct: 782 VYG 784
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 171/705 (24%), Positives = 308/705 (43%), Gaps = 80/705 (11%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDG 163
G +R+ S+ EV + +I E K + F + + +++ + V P C+ P + G
Sbjct: 121 GDTKRVFSAE-EVLAVFSKISEHDMKLMGFDITFARPSWMVIQSMLVIPPCVR-PYVHFG 178
Query: 164 VSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAK 221
DL+I +L V ++ + +G QE + LQ V ++ E+ G
Sbjct: 179 SDRSEDDLTIKLLDIVKVNRQLQKYESTGVAQHVVQETVAV-LQYHVATFMNNEIPGLPV 237
Query: 222 SSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
++ S+ P + + L+ ++R + K FS+R+VITGD +++++GV
Sbjct: 238 ATTK-------SKKPMKSIRERLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQIDQVGV 290
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLRE--GSKGHT 328
P IA +T+ E V N+ L++ V N +T +DG+ + LR G+
Sbjct: 291 PRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVWPGARYITRTDGTR-FDLRHCAGNPAVL 349
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L PG V R + DGD V NR P+ HK S+ V V T + N + P +ADFDG
Sbjct: 350 QLEPGYKVERHVRDGDYVLFNRQPSLHKMSIMGHRVKVLPWSTFRCNLSVTAPYNADFDG 409
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L QS +AE+ +L V KQ++S + + D+LL L K+ + F+D+
Sbjct: 410 DEMNLHLAQSQETRAEIKQLCLVPKQIVSPQGNKPVMGIVQDSLLGLAKMTSRDTFIDRP 469
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
L ++ LP P + K WT Q++ +L G
Sbjct: 470 IMMGLCLWVRDWDGILPAPVIYKP--EKLWTGKQLITMILKAGQRGANHVTLHRDGAIRL 527
Query: 488 -----FDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
+ S D R +I+ SE + G + T + ++ ++ + GPE+ +F S Q
Sbjct: 528 KQDNEYLSANDGRIIIQDSEHVAGIICKRTAGTSSGSLIHVLWHQCGPEKTKDFLSSTQK 587
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNEL--------- 590
++ L + GF+V + D + +++ + Y + R++ Q +L
Sbjct: 588 VVNNWLVSIGFTVGVSDIVADSKTVSRVKEALDDSYVKVDELIRLARQGKLETQPGKSLL 647
Query: 591 ------VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
V+ ++ + A+ + + + ++++ S + + Q +G Q +
Sbjct: 648 ESFENRVNQELNQAREASGRIAAENLTNKNNIISMVNAGSKGSTINISQIMACVG-QQNV 706
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
GK + HF R +Y G + + GL P+E H++ RE I+
Sbjct: 707 EGKRIPFGFQDRSLPHFLR-----HDYGPDSRGFVYNSYLSGLLPHELFFHAMGGREGII 761
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ SE G + + L+ + DV++ YD TVRN + I+QF Y
Sbjct: 762 DTACKTSETGYIQRRLVKAMEDVLVTYDRTVRN-SNGEIVQFLYG 805
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 258/591 (43%), Gaps = 59/591 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA +T+ E V NI+ + EL+ N
Sbjct: 264 RIRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIALNLTYPELVTPFNIDKMYELIRN 323
Query: 306 KLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR K L G V R I DGD + NR P+ HK S
Sbjct: 324 GPTEHPGAKYIIRDDGQRLDLRFARKASDLHLEYGYKVERHIQDGDVIIFNRQPSLHKMS 383
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V + T ++N + P +ADFDGD +++ PQ+ A+AEV+EL V KQ++++
Sbjct: 384 MMGHKVKIMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVTA 443
Query: 419 HNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARW 474
+ + + D LL ++ ++ F++K + M+ S +P P + K + W
Sbjct: 444 QSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMWLESWDGTVPTPTILKPK--QLW 501
Query: 475 TALQILQSVLP------------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T Q+ ++P P ++ LI++ E++ G ++ T+ + +V
Sbjct: 502 TGKQVFSLIIPRNTNFVNADDEEPDMSFTDNKVLIEEGELVSGILNKKTLGTSHKSLVHV 561
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
I+ E G E F + +Q ++ L GFSV + D + L I + I+ +
Sbjct: 562 IWNEHGSEVCKHFLNQVQHVVNYWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVKE 621
Query: 583 R----------------MSTQNELVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSD 625
R M E V QI N R K + +S+ ++ + S
Sbjct: 622 RQLEAQQGQLERQPGRTMMESFEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGSK 681
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q +G Q + GK + HF + ++ G ++ +
Sbjct: 682 GSAINISQVLACVG-QQNVEGKRIPFCFRDRTLPHFVKD-----DFGPESRGFVENSYLR 735
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ L DV++ YD TVRN + +IQ
Sbjct: 736 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDYTVRNSLGD-VIQ 794
Query: 746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPA----YKAVLDSSPSSNNSW 792
F Y + ++ +P L A MSN Y+ D SPS W
Sbjct: 795 FLYGEDGMDGQTV--ETQP---LDALKMSNEGVVLKYQHDYD-SPSWGEGW 839
>gi|397135894|gb|AFO11442.1| RNA polymerase I, partial [Schwanniomyces occidentalis]
Length = 872
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 155/635 (24%), Positives = 273/635 (42%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEVVTPYNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAELSEICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDNFIE--YDQVM 360
Query: 453 AMFALSPL---PRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRYLI 497
M P P + + WT QIL +P G FD + LI
Sbjct: 361 NMLYWIPNWDGVIPPPAIIKPKPLWTGKQILSMAIPKGIHLQRFDEGKNLLSPKDNGMLI 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP+ + F S+Q ++ L GFS+ +
Sbjct: 421 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFWLLHSGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIE--------------------- 596
D + + ++ IQ + Q ++D Q+
Sbjct: 481 DTIADASTMRDVTSTIQEA------KNKVQEIILDAQLNKLEPEPGMTLRESFEHNVSRV 534
Query: 597 -NHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 535 LNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFA 593
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 594 DRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + ++ L D+++ YDGT RN + IIQF Y
Sbjct: 649 YIQRRIIKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
Length = 999
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 165/640 (25%), Positives = 285/640 (44%), Gaps = 92/640 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISKLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IENHIRHVK 603
+ + D + I+ E+ S + R++ DL+ E+ +
Sbjct: 589 IGIGDTVPDIGTVEKIKSEVDKKKSEV-ERITQSAVAEDLEALPGMNVRETFESKV-SAA 646
Query: 604 MLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK-----FY 649
+ A+ ++T L D + S + + Q +G Q S GK F
Sbjct: 647 LNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFK 705
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+TL HF + +Y A G ++ + GL P E H+++ RE ++ ++
Sbjct: 706 YRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 755
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 756 TAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
Length = 1457
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 184/697 (26%), Positives = 302/697 (43%), Gaps = 95/697 (13%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
+ + LQLAV Y+ S + G P L+ + F SG
Sbjct: 314 EQWDYLQLAVAMYINSDSVNPSM--LPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRV 371
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCL 309
FS R+VI+ D ++E+ VP +A+ +T+ E+V +N + LQ+LV N L
Sbjct: 372 DFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYL 431
Query: 310 TYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
+ + +LR G K L+ G VV R I DGD V NR P+ H+ S+ + +
Sbjct: 432 LKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIR 491
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G +
Sbjct: 492 PWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAA 551
Query: 428 ATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTALQILQ 481
D + S + K F D+A TQ L+M + S L P P++ K WT Q+
Sbjct: 552 TQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPH--YLWTGKQVFS 609
Query: 482 SVLPP--------GFDSCGDRY-------------------LIKKSEVLKGDFDRDTI-P 513
++ P D+ Y LI+ S +L G D+ +
Sbjct: 610 LLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLGD 669
Query: 514 SVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
+ + +I + GP E + + + L L GFS+ + D + ++ +
Sbjct: 670 GKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMV 729
Query: 574 QALYSL------LYH--RMSTQ---NELVDLQI--------------ENHIRHVKMLVAK 608
++ Y+ L++ ++ TQ NE L+ E IR + L A
Sbjct: 730 ESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAP 789
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
I+ +T G + + S + VV Q G ++ D F ++L HF P +
Sbjct: 790 LIM--ATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF----PKN 836
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 837 SKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLS 895
Query: 729 ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR SN I+QF Y + + +PV
Sbjct: 896 CQYDNTVR-TSSNGIVQFTYGGDGLDPLDMEGNAQPV 931
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 211/899 (23%), Positives = 359/899 (39%), Gaps = 190/899 (21%)
Query: 9 ILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLG----LPLEFGKCES---CG 61
I+ +I I+FGL + +EI +S+ I H + N F + L+ G E C
Sbjct: 5 IVTKRISSIQFGLFSPEEIRKSSV--VQIIHPETMENGFPKSGGLIDLKMGTTERAFLCS 62
Query: 62 TSEPGK--CEGHFGYIELPIPIYHPSHISELK-----LTMYAFQLQIKNDGVAQRL---- 110
+ E C GHFG+IEL P++H +++++K + Y +L+I + + L
Sbjct: 63 SCEKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKKDLNFVW 122
Query: 111 ----LSSCCE------------------VKEMLKRIP-----EETRKKLAGKG------- 136
S CE KE++ I EE+ K+ G
Sbjct: 123 NISKTKSVCEGEIGENGFTGCGNKQPVIKKELMSLIAFMKGEEESDGKVILNGERVHNIL 182
Query: 137 ----------------YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
+ + IL L VPP + + +G+ DL+ + V
Sbjct: 183 KKIVNXDAVFLGFDQKFTKPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVK 242
Query: 181 KQVEIIRSSRSGTPNFESQEVES-----------NDLQLAVGQYLEVRGTAKSSRDVDAR 229
+ + G P ++ E ND+ GQ ++ + + + + AR
Sbjct: 243 ANTYLKKYELEGAPGHVVRDYEQLLQFHIATMIDNDIS---GQPQALQKSGRPLKSISAR 299
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
K ++R + K FS+RSVIT D V E+GVP EIA+ TF E
Sbjct: 300 L----------KGKEGRVRGNLMGKRVDFSARSVITPDPNISVEEVGVPSEIAKIHTFPE 349
Query: 290 RVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG--------SKGHTFLRPGQVVHRRIM 341
+ NI+ L +LV N ++Y +R ++G L G VV R +
Sbjct: 350 IITPFNIDRLTKLVSNG---PNEYPGANYVIRNDGQRIDLNFNRGDIKLEEGYVVERHMQ 406
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
DGD V NR P+ HK S+ A V V + T ++N P +ADFDGD ++L PQS +
Sbjct: 407 DGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNS 466
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFA---- 456
KAE+ EL V KQ+LS + + + D+L +L++ + F D+ T QL
Sbjct: 467 KAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRETMQLLYSVNINN 526
Query: 457 -----------------------------LSPLPRPALSKARCSARWTALQILQSVLP-- 485
+ L PA+S + WT QIL +LP
Sbjct: 527 YEFTDSSKLIMTHDDSFXNNLHTEESSNIMKILNFPAISYPK--KLWTGKQILSYILPNT 584
Query: 486 -----------PGFDSCGDRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
++ D Y +I+ E+L G D+ + S ++ I + GP+ V
Sbjct: 585 IYNGKSNEHNEEDLENVEDSYVIIRNGEILSGIIDKKAVGSTQGGLIHIIANDFGPDRVT 644
Query: 534 EFFDSLQPLLMENLF---ADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNEL 590
FFD Q ++ NL+ + FS+ + D K + +Q+ I+ + NE+
Sbjct: 645 CFFDDAQKMM--NLYFATINAFSIGIGDAIADKETMSQVQRSIETAKEQV-------NEI 695
Query: 591 VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG-----LQLSDR 645
+ +N + + + + +S + Y+++ D + + + F + +
Sbjct: 696 IVKAQKNKLERLPGMSMRESFESQ-VNYILNKPRDISGASASKSLSFCNNMRTMVLAGSK 754
Query: 646 GKFYSKTLVEDIASH----FERIYPMDLNYPT------AKY-----GLIKGCFFHGLDPY 690
G F + + V +RI P NY + A Y G ++ + G+ P
Sbjct: 755 GSFINISQVTACLGQQNVEGKRI-PFGFNYRSLPHFSKADYSGKSRGFVENSYVKGITPE 813
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ + D + D +VR I Q++Y
Sbjct: 814 EFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVTLDRSVRG-ADGFIYQYEYG 871
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 153/547 (27%), Positives = 248/547 (45%), Gaps = 54/547 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V NI L + V N
Sbjct: 350 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPFNIERLTQYVQN 409
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKH 357
+ SDG+ LR + + L G V R ++DGD V NR P+ HK
Sbjct: 410 GPNEHPGARFVVRSDGTR-IDLRHHRRASSIQLEYGWKVERHLIDGDYVIFNRQPSLHKE 468
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 SMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVS 528
Query: 418 SHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSAR 473
+ + D L + M ++ FL K L ++ +P PA+ K R R
Sbjct: 529 PQRNGPLMGIVQDTLAGVYKMCRRDVFLTKEQVMNLMLWVPDWDGIIPIPAILKPR--PR 586
Query: 474 WTALQILQSVLPP------GFDSC-------GDRYLIKKSEVLKGDFDRDTIPSVINEIV 520
WT QI+ ++P G DS D LI++ E++ G + ++ + IV
Sbjct: 587 WTGKQIVSMIIPKIINLHMGSDSPDKNHPFKDDGLLIQQGEIMYGLLSKKSVGASGGGIV 646
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
+ E GP+ ++F + Q ++ L +G S+ + D + +QK I + +
Sbjct: 647 HLCYNELGPQGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDPKTIELVQKHINDEKAEV 706
Query: 581 YH--RMSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------S 622
+M+T NEL L EN + + +A+ ++T L D S
Sbjct: 707 ERLTKMATNNELEPLPGMNIRETFENKV-STALNMARDKAGTTTEKSLKDLNNAVTMARS 765
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q +G Q+ + GK HF + D P A+ G ++
Sbjct: 766 GSKGSSINISQMTALVGQQIVE-GKRIPFGFKYRTLPHFTK----DDYSPEAR-GFVENS 819
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H+++ RE ++ ++ +E G + + L+ L D YDGTVRN +
Sbjct: 820 YLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGD- 878
Query: 743 IIQFDYA 749
+IQF Y
Sbjct: 879 VIQFVYG 885
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCGTSE 64
I+FGL + +EI S+ C I + L +P LG KC++C T
Sbjct: 19 IQFGLLSPEEIKAMSV--CHILYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTC-TEN 75
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I K
Sbjct: 76 MSECPGHFGHIELARPVYHPGFIKRTK 102
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 155/626 (24%), Positives = 281/626 (44%), Gaps = 65/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R G+P E E+ LQ V Y++ + G ++ +
Sbjct: 263 DLTYKLADILKANINVQRFEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 319
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 320 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 374
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI L ELV N D LR + G L+ G V
Sbjct: 375 VLSYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKV 434
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 435 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVP 494
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q + M
Sbjct: 495 QSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE--YDQVMNMC 552
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P+PA+ K + W+ Q+L +P G LI
Sbjct: 553 FWIPNWDGVVPQPAILKPK--PLWSGKQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNG 610
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ T+ S ++ ++ EKGP+ + F ++Q ++ L +GFS+ + D
Sbjct: 611 EIMFGVVNKATVGSSAGGLIHTVMREKGPKVCAQLFGNIQKVVNYWLLHNGFSIGIGDAI 670
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRHVKM 604
+ I + I A + M Q L++ + + N R
Sbjct: 671 ADSETMKTITETIAIAKEKVQEVIMDAQKNLLEAEPGMTVRESFEQKVSKLLNEARDSAG 730
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK S+ + ++ + S + + Q + +G Q+ + GK + + HF +
Sbjct: 731 KSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPHFTK 789
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 790 D-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 844
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + +IQF Y
Sbjct: 845 LEDIMVHYDGTTRNSLGD-VIQFIYG 869
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFG-------------KCESCGTS 63
++FGL + +EI S++ ++ +P P E G +C++C +
Sbjct: 17 VQFGLLSPEEIRAISVAKIEYP---EIMDPTTNKPRENGLNDPRLGSIDRNFRCQTC-SE 72
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELK 91
+ +C GHFG+IEL P++H +S +K
Sbjct: 73 DMQECPGHFGHIELAKPVFHIGFVSRIK 100
>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium
chlorophanum]
Length = 1011
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 271/625 (43%), Gaps = 62/625 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 193 DLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEAL-LQFHVATYMDNDIAGQPQALQK-- 249
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 250 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAK 304
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L +LV N D LR + G L+ G V
Sbjct: 305 TLTYPETVTPYNIHKLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKV 364
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DG HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 365 ERHIVDGXXXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 424
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ +L V ++S + + D L + M ++ FL K + ++
Sbjct: 425 QSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLW 484
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPGFD-----------SCGDRYLIKKSE 501
+P+PA+ K +WT QI+ V+P G + + D + E
Sbjct: 485 VPDWDGVIPQPAILKPH--PKWTGKQIISLVIPKGLNLIRGSEEGLSPANDDGLFVHGGE 542
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G F + ++ + I+ IF EKGPE + FF+ Q ++ L +GFS+ + D
Sbjct: 543 LMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 602
Query: 562 SKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI------LKS 613
+ + I+ + + + R +T+NEL L N + V+K + +
Sbjct: 603 DRNTIQQIENAVNKHKADVAEITRSATENELEPLPGMNVRETFESKVSKALNAARDEAGA 662
Query: 614 STLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
T L D S S + + Q +G Q S GK HF +
Sbjct: 663 ETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRTLPHFTKD 721
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L
Sbjct: 722 -----DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 776
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
DV+ YDGTVRN + I+QF Y
Sbjct: 777 EDVMAKYDGTVRNSLGD-IVQFVYG 800
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 178/729 (24%), Positives = 300/729 (41%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ + V E+ K I +E L F +
Sbjct: 179 YQP-NIRRSGLDLTAEWKHVNEDNQEKKISLTAERVWEIFKHITDEECCALGMDPKFARP 237
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D I+ LPVPP + + G + DL+ + + E+IR+ ++G
Sbjct: 238 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKANNELIRNEQAGGAAHVIAE 297
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 298 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 344
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQ 404
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 405 YPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++
Sbjct: 465 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+PA+ K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWNGVMPQPAIMKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ E++ G + T+ +
Sbjct: 583 VFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ F E G E +F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 643 SLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 702
Query: 578 SLLY------HRM---STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 703 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 762
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 763 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 816
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 817 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 876
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 877 Q-LIQLRYG 884
>gi|219852750|ref|YP_002467182.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
gi|219547009|gb|ACL17459.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
Length = 880
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 173/698 (24%), Positives = 303/698 (43%), Gaps = 84/698 (12%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSD 170
+++ L++IP+ + L G P + IL LPVPP + I + D
Sbjct: 175 ADIRARLEKIPDSDLRLL---GINPDVARPEWTILTVLPVPPVTMRPSIILENGQRSEDD 231
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L+ ++ + + +G P +++ LQ V YL EV G +
Sbjct: 232 LTHKLVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCPPARHR--- 287
Query: 229 RFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
S P T L+ + R K FS+R+VI+ + ++E+G+P IA
Sbjct: 288 ----SGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPNPNLSISEVGIPIGIANE 343
Query: 285 ITFEERVNVHNINYLQELV---DNKLCLTYSDGSSSYSLREGSKGHTF-----------L 330
++ RV +NI L+ V N+ L G++ Y +R ++ +
Sbjct: 344 MSVPVRVTPYNIEELRVYVRKGPNREGLKDICGAN-YVIRPDNRRLRLADGNLETIAEQI 402
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
PG V R++ DGD V NR P+ H+ S+ A + V + T ++NP +C P +ADFDGD
Sbjct: 403 EPGWTVERQLRDGDIVLFNRQPSLHRMSIMAHRIKVMEGRTFRLNPAVCPPYNADFDGDE 462
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAF 448
++L PQ+ A+AE L +V++ +LS G + D + + ++ ++F F
Sbjct: 463 MNLHVPQTEEARAEASILVAVQQNILSPRFGGPIIGGIHDHISGIFMLTHDLRWFAKDDF 522
Query: 449 TQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD------SCG---------- 492
L + +P P + W+ Q+ +LP + SC
Sbjct: 523 LYLLKYYDFDHMPEPGKIENGIPY-WSNKQVFSMILPNELNMVFKASSCANCDVCVKDQC 581
Query: 493 --DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
D ++ I + +++ G D+ +I + EI+ I + G E +F D + L ++ +
Sbjct: 582 ERDAFVRILEGQLITGTIDKKSIGAFDGEILNRIIRQYGMERAAKFIDDMTKLSIKGIMI 641
Query: 550 DGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-------------STQNELVDLQI- 595
DGFS ++D LSK I + + + + R+ T E +++QI
Sbjct: 642 DGFSFGIDDEDLSKTEYGQIDEVLDNATTDVNRRIRIYEDGQLEPMPGRTPEETLEMQIM 701
Query: 596 ----ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 651
++ R ++ A L +S + + S + ++ + Q AG +G Q S RG+ +
Sbjct: 702 QVLGKSRDRTGEIAGAHLGLGNSAV-LMAVSGARGSMLNLTQMAGCIG-QQSVRGERIVR 759
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
HF+R + +G +K + GL+P E H+I RE +V ++ S
Sbjct: 760 GYFGRTLPHFKR-----GDRGADAHGFVKHSYKSGLNPTEFFFHAIGGREGLVDTAVRTS 814
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ G L + L+ L+D+ + YDGTVR IIQF Y
Sbjct: 815 QSGYLQRRLINALQDLKVEYDGTVRTT-GRRIIQFRYG 851
>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
Length = 1458
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 207/855 (24%), Positives = 356/855 (41%), Gaps = 125/855 (14%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +V+ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEVVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE------------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMR 248
+ LQLAV Y+ G K R R Q + R
Sbjct: 314 EHWDYLQLAVAMYINSDSVNPAILSGGTGGKVKPIRGFCQRLKGKQG----------RFR 363
Query: 249 TLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--- 305
K FS R+VI+ D V+E+ VP +A+ +T+ ERV +N LQ+LV N
Sbjct: 364 GNLSGKRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPN 423
Query: 306 ----KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
L D + +LR G K LR G +V R + DGD V NR P+ H+ S+
Sbjct: 424 EYPGANYLLKKDEDARRNLRFGDRVKLAKNLRIGDLVERHLEDGDVVLFNRQPSLHRLSI 483
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ + T ++N +C P +ADFDGD ++L PQS A+AE + L V+ LL+
Sbjct: 484 LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQSEEARAEAINLMGVKSNLLTPK 543
Query: 420 NGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSAR 473
+G + D + S + K F DK TQ L+M + L P P + K C
Sbjct: 544 SGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLLSMMSDGALQFDIPPPTIWKP-CYL- 601
Query: 474 WTALQILQSVLPP--------GFDSCGDRY-------------------LIKKSEVLKGD 506
WT QI ++ P D+ Y LI+ S++L G
Sbjct: 602 WTGKQIFSLLIRPNKKSPVVLNLDAKNKVYIPPKSKSLPNEMSQNDGFVLIRGSQILSGV 661
Query: 507 FDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
D+ + + + +I + G +E E + + L + GFS+ + D + ++
Sbjct: 662 MDKSVLGDGKKHSVFYTILRDYGSQEAAEAMNRMAKLCARYVGNRGFSIGISDVTPAEEL 721
Query: 566 LWNIQKEIQALYS--------LLYHRMSTQ-----NELVDLQIENHIRHVKMLVAKFILK 612
++ +++ Y+ ++ TQ + ++ +I + V+ V + +
Sbjct: 722 KEKKEEMVESAYAKCDELIDLFSKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIN 781
Query: 613 S----------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+T G + + S + VV Q G ++ D F ++L HF
Sbjct: 782 ELDNMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGSRVPD--GFQDRSL-----PHF- 833
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 834 ---PKNSKTPQSK-GFVRNSFFSGLTPPEFLYHAISGREGLVDTAVKTAETGYMSRRLMK 889
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
L D+ YD TVR SN I+QF Y + + +PV + +
Sbjct: 890 SLEDLSCLYDNTVR-TSSNGIVQFTYGGDGLDPLEMEGNAQPVNFNRTWDHATNVTFNNM 948
Query: 783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
D ++ +EIL P++ R++ Y N K ++R Y+ +N +R
Sbjct: 949 DRGLLPYQIMQVTEEIL--------QPLENRLVRYDNLGNEITKENRDRIEYIDQNDAER 1000
Query: 843 V---SLKD---AAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLRISMHDILPK 892
SL+D A + L +++ E++ + + + L++ + ED+R S+ +
Sbjct: 1001 GFYHSLRDFIWAKAQLLAKFRGSKDMKELMDEPALELQSVDLDENVPEDIRHSVDQVYRI 1060
Query: 893 CQETLKSFCKKKKMK 907
+ ++ F + +K
Sbjct: 1061 TDKMVREFLRVAILK 1075
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 153/637 (24%), Positives = 276/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 266 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 324
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 325 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 374
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 375 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 434
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 435 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 494
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 495 HVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--YDQVM 552
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ + WT Q+L +P G FD +
Sbjct: 553 NMLYWIPNWDGVIPPPAIVSPK--PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGM 610
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
L+ E++ G D+ T+ + ++ ++ EKG + + F S+Q ++ L +GFS+
Sbjct: 611 LVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGFSIG 670
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + + ++ IQ + Q ++D Q
Sbjct: 671 IGDTIADSSTMRDVTTTIQDA------KDKVQEIILDAQSNKLEPEPGMTLRESFEHNVS 724
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 725 RVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFG 783
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 784 FADRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 838
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDG+ RN + IIQF Y
Sbjct: 839 TGYIQRRLVKALEDIMVHYDGSTRNSLGD-IIQFVYG 874
Score = 46.6 bits (109), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ +I +++ L +P LG KC++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETIDQSTKKPREAGLNDPRLGSIDRNFKCQTCG-EDMA 76
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 77 ECPGHFGHIELTKPVFHIGFIAKIK 101
>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
caballus]
Length = 1390
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 223/843 (26%), Positives = 347/843 (41%), Gaps = 147/843 (17%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI VL P DS CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVVLRPSDDSPVRANLRTKGKQYCGRGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + ++ EP+ +K VLD+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL-----------EFKRVLDN--- 927
Query: 788 SNNSWELMKEILLCR----VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRV 843
+K + CR +S N + I+ N+ C CQ+ +K +K V
Sbjct: 928 -------IKAVFPCRSEPALSKNELILTTESIMKKNEFLC----CQDSFLQEIKKFIKGV 976
Query: 844 SLK 846
S K
Sbjct: 977 SEK 979
>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
prasinos]
Length = 1499
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 181/704 (25%), Positives = 304/704 (43%), Gaps = 110/704 (15%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSG-------T 193
+ ++ +L VPP C+ DG + + D I+M K+++ +EI R G T
Sbjct: 268 ENMVITHLSVPPCCIRPSVELDGQAGSTED-DISM--KLVQIIEINNVLRQGLERGLAVT 324
Query: 194 PNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
E+ E LQ+ Y+ SS+ Q P + ++++++ R
Sbjct: 325 NMMENWEF----LQIQFAMYINSELPGISSQ--------YQSPGKPLRGFVQRLKGKQGR 372
Query: 254 -------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
K F++R+VI+ D R++E+G+P IA ++T+ E VN +NI L++L+ N
Sbjct: 373 FRGNLSGKRVDFTARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNNNIAELRQLIING 432
Query: 307 ------LCLTYSDGSSSYS---LREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTH 355
S S +S L+ G + L+PG +V R + DGD V NR P+ H
Sbjct: 433 EGKWPGANFVKSKQSGHFSAQYLKYGDRNRVAKKLKPGDIVERHVRDGDIVLFNRQPSLH 492
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ A V T++ N +C P +ADFDGD +++ PQ+ A+AE + L V + L
Sbjct: 493 KMSIMAHRAKVMPWRTLRFNECVCAPYNADFDGDEMNIHLPQTEEARAEAISLMGVTQNL 552
Query: 416 LSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMF---ALSPLPRPALSKARCS 471
+ NG + + D L S + K+ F D++ QLA + AL + P+ + +
Sbjct: 553 CTPKNGEILIAATQDFLTASFLLTSKEVFFDRSQFGQLAAYMSDALESIDLPSPAIVKPI 612
Query: 472 ARWTALQILQSVLPPGFDS---------------------CGDRYL-IKKSEVLKGDFDR 509
WT QI ++ P D Y+ I+ SE++ G +
Sbjct: 613 EMWTGKQIFSVLIRPRMRDQIFVNLEVSEKAYTKVNQQMCSNDGYVCIQNSEIISGQLGK 672
Query: 510 DTIPSVINEIVTSIFF----EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
T+ T +F+ + G + + L L + GFS+ ++D S
Sbjct: 673 ATLGGGNK---TGLFYVLNSDYGADVAANAMNRLAKLAARWIGIRGFSIGIDDVKPSPEL 729
Query: 566 LWNIQKEIQALYSLLYHRMST-QNELVDLQ--------IENHIRHVKMLVAKFI------ 610
Q + + Y+ R+++ + +DLQ +E + V V +
Sbjct: 730 EREKQNRVDSGYAKCDERIASFEKGTLDLQPGCNAEQTLEAEVLGVLSAVREAAGNACLD 789
Query: 611 ----LKSSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
L S + L SK S + V Q G + D F+ ++L HF+
Sbjct: 790 ALPKLNSPLVMALCGSKGSTINISQMMACVGQQAVGGTRPPD--GFFERSL-----PHFK 842
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
R P AK G + F+ GL P E H+++ RE +V ++ +E G + + LM
Sbjct: 843 R----GEKTPAAK-GFVANSFYSGLLPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMK 897
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA-GEPV 765
L D+ + YDGTVRN S I+Q +Y + + + + GEPV
Sbjct: 898 ALEDLSLGYDGTVRN-SSGDIVQLEYGDDGMEPTLMEGSEGEPV 940
>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
Length = 872
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 166/679 (24%), Positives = 288/679 (42%), Gaps = 100/679 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ E+ +V Q++S + + + D L ++ M + F+D + Q +
Sbjct: 303 HVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID--YDQVM 360
Query: 453 AMFALSPL---PRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + A+ WT Q+L +P G FD D LI
Sbjct: 361 NMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKGIHLQRFDGGKDLLSPKDTGMLI 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP + F S+Q + L +GFS+ +
Sbjct: 421 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPRVCAQLFSSIQKVTNYWLLHNGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D + + +I I ++ Q ++D Q +
Sbjct: 481 DTIADVSTMKDITSTISEA------KIKVQEIILDAQSNKLEPEPGMTLRESFEHNVSRV 534
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 535 LNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFS 593
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 594 DRTLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMS 774
+ + L+ L D+++ YDGT RN + IIQF Y + + T +
Sbjct: 649 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGEDG---------------IDGTQVE 692
Query: 775 NPAYKAVLDSSPSSNNSWE 793
K +D+ P SN+S+E
Sbjct: 693 ----KQSVDTIPGSNDSFE 707
>gi|378732247|gb|EHY58706.1| DNA-directed RNA polymerase III subunit C1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1581
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 188/713 (26%), Positives = 302/713 (42%), Gaps = 85/713 (11%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
V ++ +RI R+ L + P+D ++ Y+P PP C+ +G ST D A L
Sbjct: 241 VLKLFRRIRRSDRELLGLRSAKPED-FLWLYIPAPPVCIRPSVGQEGAST--EDDITAKL 297
Query: 177 KKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQ 234
++ +R + +S + L L + Y+ +V G AK R V +
Sbjct: 298 GDIVAANNALREAIEKGAPVQSVVEHWDYLTLNLAMYINSDVPGLAKGEFGKQIRGFVQR 357
Query: 235 DPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
K + R K FS R+VI+ D R++E+ VP +A+ +T+ E VN
Sbjct: 358 -----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPILVAKNMTYPEVVNEI 412
Query: 295 NINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDT 345
NI L++ V N + DG L+ G L+ G +V R + DGD
Sbjct: 413 NIEKLRQRVRNGTKVWPGANYVYKPDGDFRIFLKFGKPELIAKELKEGDIVERHLEDGDI 472
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+ E
Sbjct: 473 VLFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEA 532
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMFALSP---- 459
L V+ +++ NG + D + + L ++F K F + + L P
Sbjct: 533 TLLMGVKHNIVTPKNGEPIISAIQDFITASFLLSSLDQFFDKKTFV-TMCIGMLEPDTKF 591
Query: 460 -LPRPALSKARCSARWTALQILQSVLPPG------------------------FDSCGDR 494
LP PA+ K + WT Q+ +L P D D
Sbjct: 592 ELPPPAVIKPQTL--WTGKQVFSVMLRPNKQSPVTVNLDAASRDHSQYHPGLHRDLQDDS 649
Query: 495 YL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
+L I+ SEVL G D+ T+ S N + ++ + GP+ + + L L L GF
Sbjct: 650 FLCIRNSEVLCGRMDKATVGSGKKNSVFYILYRDFGPDAAAQGMNRLSKLCARWLGNQGF 709
Query: 553 SVSLEDFS----LSKAALWNIQKEIQALYSLLYHRMSTQNELV--------------DLQ 594
+V + D + L KA I K + + + R+S + +L ++
Sbjct: 710 TVGISDVTPPDPLVKAKHEMIAKVFEECKAFV--RLSKEGKLKRKPGLDDAGTLEAEQIR 767
Query: 595 IENHIRH--VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
I + +R +L A+ ++S + I S ++ V Q A LG Q GK
Sbjct: 768 ILSTVRTNIAGLLTAQLSKRNSPMVMAISGSKGSNIN-VAQMAALLG-QQDIEGKRVQDG 825
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + P +K G I FF GL PYE + H++ R +V ++ +E
Sbjct: 826 FQDRTLPHFAK----HERSPPSK-GFISNSFFSGLLPYEFLFHAVGGRVGLVDTAVKTAE 880
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF + + + + +PV
Sbjct: 881 TGYMSRRLMKSLEDLSTQYDRTVRNSASN-IVQFRFGDDELDPVDMEASAKPV 932
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 176/729 (24%), Positives = 299/729 (41%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ S V E+LK I +E L F +
Sbjct: 181 YQP-NIRRAGLDLTAEWKHVNEDSQEKKIALSAERVWEILKHITDEECYILGMDPKFARP 239
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D I+ LPVPP + + G + DL+ + + E++R+ ++G
Sbjct: 240 DWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELMRNEQAGAAAHVILE 299
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 300 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 346
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ + ELV
Sbjct: 347 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMYELVRRGNSQ 406
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 407 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 466
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 467 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 526
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K L MF +P+PA+ K + WT Q
Sbjct: 527 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPK--PLWTGKQ 584
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ E++ G + T+ +
Sbjct: 585 VFSLIIPGNVNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 644
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ E G E +F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 645 SLLHICMLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 704
Query: 578 SLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 705 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 764
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 765 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 818
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 819 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 878
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 879 -QLIQLRYG 886
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 179/743 (24%), Positives = 304/743 (40%), Gaps = 79/743 (10%)
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLK 122
++P K GH G Y P I L + A + D ++++ S V E+LK
Sbjct: 164 TDPSKKTGHGGCGH-----YQP-QIKRTGLDITAEWKHVNEDTQEKKIVVSAERVWEILK 217
Query: 123 RIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK 181
I +E L F + D I+ +PVPP + + G + DL+ + +
Sbjct: 218 HITDEECFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKA 277
Query: 182 QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQD 235
E+ R+ +G E LQ V +++ R KS + + A
Sbjct: 278 NNELKRNEAAGAAAHVITE-NIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAV------ 330
Query: 236 PNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
S K ++R + K FS+R+VIT D R++++GVP IAQ +TF E V N
Sbjct: 331 -KSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFN 389
Query: 296 INYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFI 348
+ +QELV D LR K L+ G V R + D D V
Sbjct: 390 LERMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIF 449
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 450 NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 509
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPA 464
+Q+++ + + D L +++ M K+ F++K + MF + +P+P
Sbjct: 510 HITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWNGKMPQPC 569
Query: 465 LSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVL 503
+ K + WT QI ++P + S GD + +++ E++
Sbjct: 570 ILKPK--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELI 627
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
KG ++T+ + ++ F E G E F+ ++Q ++ L +G S+ + D
Sbjct: 628 KGILCKNTLGTSAGSLLHICFLELGHEVAGRFYGNIQTVVNHWLLLEGHSIGIGDTIADP 687
Query: 564 AALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KMLV 606
IQ I+ + H M T + EN + +
Sbjct: 688 QTYMEIQNSIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSA 747
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 748 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF----- 801
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN +IQ Y
Sbjct: 862 VMVHYDGTVRNSVG-QLIQLRYG 883
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 184/796 (23%), Positives = 326/796 (40%), Gaps = 90/796 (11%)
Query: 66 GKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIP 125
GK +GH G Y P+ I + L + A + D ++++ + V E+ K I
Sbjct: 150 GKKQGHGGCGR-----YQPN-IRRIALDLTAEWKHVNEDSQEKKIVLTAERVWEIFKHIS 203
Query: 126 EETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVE 184
+E L Y D I+ LPVPP + + G + DL+ + + E
Sbjct: 204 DEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNE 263
Query: 185 IIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNS 238
++R+ ++G E LQ V ++ R KS R + A +
Sbjct: 264 LLRNEQAGAAAHVIAE-NIKMLQFHVATLVDNDMPGLPRAMQKSGRPLKAL-------KA 315
Query: 239 TTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINY 298
K ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI+
Sbjct: 316 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDK 375
Query: 299 LQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRP 351
+Q+LV D LR K L+ G V R I +GD + NR
Sbjct: 376 MQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQ 435
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
PT HK S+ V V T ++N + P +ADFDGD ++L PQS+ +AEV +
Sbjct: 436 PTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHIT 495
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSK 467
+Q+++ + + D L +++ M K+ FL+K L M +P+PA+ K
Sbjct: 496 ARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPAILK 555
Query: 468 ARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGD 506
+ WT Q+ ++P + S GD + +++ E++ G
Sbjct: 556 PK--PMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGI 613
Query: 507 FDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL 566
+ T+ + ++ E G E F+ ++Q ++ L +G S+ + D
Sbjct: 614 LCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTY 673
Query: 567 WNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAKF 609
IQK I+ + H M T + EN + + K
Sbjct: 674 LEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKS 733
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
+ + + L ++ + S + + Q +G Q + GK + HF +
Sbjct: 734 LTEYNNLKAMVVAGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKD 787
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 788 DYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 847
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN 789
YDGT+RN +IQ Y + ++ +P +SN A++ P++
Sbjct: 848 HYDGTIRNSVG-QLIQLRYGEDGLAGETVEFQTQP-----TIKLSNKAFEKKFKFDPTNE 901
Query: 790 N------SWELMKEIL 799
+ ++MKE++
Sbjct: 902 RYLRRIFNEDIMKELM 917
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 248/550 (45%), Gaps = 61/550 (11%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V +NI L + V N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQN 408
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDGS + G L G V R ++DGD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P PA+ K R RW
Sbjct: 529 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNVMLWVPEWDGIIPIPAILKPR--PRW 586
Query: 475 TALQILQSVLPP-----------GFDSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QI+ V+P G D+ LI++ EV+ G + + + I+
Sbjct: 587 TGKQIISMVIPKIINLKNLDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIIHL 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---QALYSL 579
+ E GP ++F + Q ++ L +G S+ + D A + +Q I +A +
Sbjct: 647 CYNELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKM 706
Query: 580 LYHRMSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------SK 623
L + +T NEL L EN + + A+ ++T G L D S
Sbjct: 707 LTDQ-ATNNELEPLPGMNIRETFENKVSKA-LNTARDKAGTTTEGSLKDLNNAVTMALSG 764
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
S + + Q +G Q+ + + F +TL HF + D P A+ G +
Sbjct: 765 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHFTK----DDYSPEAR-GFV 814
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H+++ RE ++ ++ +E G + + L+ L D YDGTVRN
Sbjct: 815 ENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSL 874
Query: 740 SNSIIQFDYA 749
+ IIQF Y
Sbjct: 875 GD-IIQFVYG 883
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI + S++ + L +P LG KC++C T
Sbjct: 19 IQFGLLSPEEIKSMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTC-TENMS 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I +K
Sbjct: 78 ECPGHFGHIELARPVYHPGFIKRVK 102
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 175/720 (24%), Positives = 299/720 (41%), Gaps = 75/720 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
Y P +I L + A D +++ S V E+LK I +E L F +
Sbjct: 181 YQP-NIRRTGLDLTAEWKHTNEDNQEKKIALSAERVWEILKHITDEECLILGMDPKFARP 239
Query: 142 GYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
++L LPVPP + + G + DL+ + + E+IR+ ++G + S+
Sbjct: 240 DWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHIISE 299
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 300 NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKALKARLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E + NI+ +QELV
Sbjct: 353 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKY 412
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR + L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 413 IIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 472
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++ + +
Sbjct: 473 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIV 532
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K + MF +P+PA+ K + WT Q+ ++
Sbjct: 533 QDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPK--PLWTGKQVFSLII 590
Query: 485 PPG------------------FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFE 526
P ++ CG R G+F + T+ + ++ E
Sbjct: 591 PGNVNMIRTHSTHPDEEDDGPYNCCGAR------RTYYGNFVQKTLGTSAGSLLHICMLE 644
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY----- 581
G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 645 LGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 704
Query: 582 -HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVS 629
H M T + EN + + K + + + L ++ S S +
Sbjct: 705 AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 764
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+ Q +G Q + GK + HF + +Y G ++ + GL P
Sbjct: 765 NISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTP 818
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 819 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 877
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S++D I + L +P G+ +C++C +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVVDRMSRCQTCAGNM-T 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+I+L P++H
Sbjct: 75 ECPGHFGHIDLAKPVFH 91
>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
Length = 866
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/626 (24%), Positives = 281/626 (44%), Gaps = 65/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + R G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANINVQRFEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 VLSYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q + M
Sbjct: 306 QSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE--YDQVMNMC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P+PA+ K + W+ Q+L +P G LI
Sbjct: 364 FWIPNWDGVVPQPAILKPK--PLWSGKQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNG 421
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ T+ S ++ ++ EKGP+ + F ++Q ++ L +GFS+ + D
Sbjct: 422 EIMFGVVNKATVGSSAGGLIHTVMREKGPKVCAQLFGNIQKVVNYWLLHNGFSIGIGDAI 481
Query: 561 LSKAALWNIQKEIQ-ALYSLLYHRMSTQNELVDLQ---------------IENHIRHVKM 604
+ I + I A + M Q L++ + + N R
Sbjct: 482 ADSETMKTITETIAIAKEKVQEVIMDAQKNLLEAEPGMTVRESFEQKVSKLLNEARDSAG 541
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK S+ + ++ + S + + Q + +G Q+ + GK + + HF +
Sbjct: 542 KSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPHFTK 600
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 D-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 655
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + +IQF Y
Sbjct: 656 LEDIMVHYDGTTRNSLGD-VIQFIYG 680
>gi|397135880|gb|AFO11435.1| RNA polymerase I, partial [Lodderomyces elongisporus]
Length = 872
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/635 (24%), Positives = 275/635 (43%), Gaps = 81/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVIKANMNVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 183 IAKTLTYPEIVTPYNIHKLTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WRVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 360
Query: 453 AMFALSPL---PRPALSKARCSARWTALQILQSVLPPG-----FDSCGD-------RYLI 497
M P P + + W+ Q+L +P G FD D LI
Sbjct: 361 NMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSLAIPKGIHLQRFDGGRDLLSAKDTGMLI 420
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G D+ T+ + ++ ++ EKGP + F S+Q ++ L +GFS+ +
Sbjct: 421 VDGEIMFGVVDKKTVGATGGGLIHTVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIG 480
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------------------I 595
D A + +I K IQ + Q ++D Q +
Sbjct: 481 DTIADAATMKDITKTIQEA------KAKVQEIILDAQHNKLEPEPGMTLRESFEHNVSRV 534
Query: 596 ENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 535 LNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFA 593
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 594 DRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L D+++ YDGT RN + IIQF Y
Sbjct: 649 YIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 682
>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
porcellus]
Length = 1390
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 210/804 (26%), Positives = 331/804 (41%), Gaps = 124/804 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLIVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP PA+ K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKVKVRLPHPAILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ S N I + + G E + L L L GFS+ + D + + L
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLL---- 710
Query: 571 KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK-----FILK----------SST 615
+A Y LL +E ++ ++ A+ ILK S+
Sbjct: 711 ---KAKYELLNAGYKKCDEYIEALNTGRLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPM 667
L L S S ++ + F+ + Q + G HFE+ +
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + ++ EP+ Y + + S
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCPSEPALS 941
Query: 788 SN----NSWELMK--EILLCRVSF 805
N ++ +MK E L C+ SF
Sbjct: 942 KNELALSTEAIMKKNEFLCCQDSF 965
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1319
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 214/863 (24%), Positives = 344/863 (39%), Gaps = 143/863 (16%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISE---------------LKLT-------- 93
C +CG + C GH+GY++L +P +H + LK+
Sbjct: 69 CLTCGKTL-ADCLGHYGYLDLELPCFHIGYFKAIIGILQARPVKKCGLLKIIHEKYKTTK 127
Query: 94 ----------MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKLA--GK 135
+ +F + I+++ V + LLS E V + KRI E L +
Sbjct: 128 KVVDPFVSEFLQSFDIAIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPE 187
Query: 136 GYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN 195
P D IL L VPP C+ +SD S + D L +++ ++I+ R
Sbjct: 188 AGIPAD-LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAK 246
Query: 196 FESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
+ + + LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 247 TQMIMEDWDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGR 295
Query: 254 -------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK 306
K FS R+VI+ D R++E+ VP +A+ +T+ ERVN N+ +++LV N
Sbjct: 296 FRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNG 355
Query: 307 ---------LCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
+ Y+ K LR G +V R ++DGD V NR P+ HK
Sbjct: 356 PEVHPGANFIQNRYNQIKRFLKYGNREKIAQELRYGDIVERHMIDGDIVLFNRQPSLHKL 415
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ A V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++
Sbjct: 416 SIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVT 475
Query: 418 SHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS--------PLPRPALSKA 468
NG + D L ++ K F D++ Q+ L PRPA+ K
Sbjct: 476 PRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISFPRPAIMKP 535
Query: 469 RCSARWTALQILQSVLPPGFD--------SCGDRY--------------LIKKSEVLKGD 506
A WT QI +L P D + G +Y +I SE++ G
Sbjct: 536 --MALWTGKQIFSVILKPSKDCPVNANLKTKGKQYCGKGEDLCHNDSFVVIHNSELMCGS 593
Query: 507 FDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
D+ T+ S N I + + G E L L L GFS+ + D + +
Sbjct: 594 MDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 653
Query: 566 L-----------WNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK 612
L + I+AL + L T E ++ I + ++ L+
Sbjct: 654 LKAKHDLLDDGYTKCDEYIEALQTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLR 713
Query: 613 ------SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
S L SK S + V Q G ++ D F +++L HFE
Sbjct: 714 ELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFE 766
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+
Sbjct: 767 KHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVK 821
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
L D+ YD TVR+ + IIQF Y + ++ EP+ Y A
Sbjct: 822 SLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVY-ACS 879
Query: 783 DSSPSSNNSWELMKEILLCRVSF 805
D S N L + ++ R F
Sbjct: 880 DEPALSQNELVLTADAIMKRTDF 902
>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1437
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 179/695 (25%), Positives = 299/695 (43%), Gaps = 116/695 (16%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS------------IAMLKKVLKQVEII 186
P+D YI +Y+ VPP C+ P ++ DL+ +A++ + + +E+I
Sbjct: 255 PED-YIWQYISVPPPCIR-PSVASEAGNNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK 246
S N+E L AV Y+ + + G Q K +
Sbjct: 313 SS------NWEV-------LGQAVALYINSQAPGMQTIGSKPIRGFVQ----RLKGKQGR 355
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--- 303
R K FS R+VI D R++E+ VP ++A ++++ ERV +NI +++ +
Sbjct: 356 FRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIING 415
Query: 304 ------DNKLCLTYSDGSS-SYSLR-----EGSKGHTF-LRPGQVVHRRIMDGDTVFINR 350
N L + +GS+ SL E K + L+ G VVHR + DGD V NR
Sbjct: 416 SKLHPGANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNR 475
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ HK S+ V V T ++N +C P +ADFDGD ++L PQ+ A+ E LEL S
Sbjct: 476 QPSLHKLSIMCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMS 535
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPL----PRPA 464
V+K L++ NG + D + + ++ + +++ + FTQ + + L P P
Sbjct: 536 VKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPT 595
Query: 465 LSKARCSARWTALQILQSVLPPGFDS---------C------------------GDRYL- 496
+ K WT QI ++ P +S C D YL
Sbjct: 596 IWKP--VRLWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLV 653
Query: 497 IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SE++ G FD++T+ N + I + GPEE + + L + L GFS+
Sbjct: 654 IQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLG 713
Query: 556 LEDFSLSKAALWNIQKEIQALYSL--LYHRMSTQNEL-----------VDLQIENHIRHV 602
+ D + ++ Y ++ ++ + +L ++ +I + V
Sbjct: 714 INDVIPGPILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDV 773
Query: 603 KMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLSD----RGKFYSKTLV 654
+ V K ++ S LI + S +V V Q +G Q+ R F ++L
Sbjct: 774 REAVGKICMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSL- 832
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + N P+ G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 833 ----PHFRK---KSKNPPSK--GFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD +VRN I+QF Y
Sbjct: 884 YMARRLMKALEDLCTHYDLSVRNSVG-GIVQFQYG 917
>gi|302409260|ref|XP_003002464.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium
albo-atrum VaMs.102]
gi|261358497|gb|EEY20925.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium
albo-atrum VaMs.102]
Length = 1456
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 172/703 (24%), Positives = 294/703 (41%), Gaps = 115/703 (16%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
+I ++LP PP C+ P ++ ++ DL+ + V I + + G+P ++ +
Sbjct: 262 FIWQFLPAPPVCIR-PSVAQDNASTEDDLTTKLADIVWISGMIRLALQKGSP-VQTIMEQ 319
Query: 203 SNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKG 255
LQL + Y L+ G K+ R R Q + R K
Sbjct: 320 WEYLQLQIAMYVNSDVPGLQQPGFGKTVRGFCQRLKGKQG----------RFRGNLSGKR 369
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KL 307
FS R+VI+ D + ++ +P +A+ +T+ ERVN +++ L++ V N +
Sbjct: 370 VDFSGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGAQQ 429
Query: 308 CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ +G SL+ G++G L+ G VV R I D D V NR P+ HK S+ + V
Sbjct: 430 VIKSDEGGYKISLKFGNRGQVARDLKVGDVVERHIEDNDIVLFNRQPSLHKLSIMSHLVK 489
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ L + NG +
Sbjct: 490 VRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEPII 549
Query: 426 QLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSKARCSARWTALQI 479
D + + ++ K F D+ + M + LP PA+ K + A WT Q+
Sbjct: 550 AATQDFITAAYLLSGKDRFFDRKTFTYIVMHMMDGITHLDLPPPAILKPQ--ALWTGKQV 607
Query: 480 LQSVLPPGFD-------------------SCGDR------YLIKKSEVLKGDFDRDTIPS 514
+L P + C D +I+ SEV+ G D+ T+
Sbjct: 608 FSMMLRPNKECQVKINLDAKCREYKAKPGQCPDMDPEDAWLVIRNSEVMCGRMDKSTVGG 667
Query: 515 VINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-------------- 559
+ V + GP+E + + L L L GFS+ + D
Sbjct: 668 GKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGVGDVFPTEQLLVKKKKLI 727
Query: 560 -----------------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHV 602
L KA N+++ ++ S L ++ TQ +Q + +
Sbjct: 728 EDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCIQTLSR-NNA 786
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+++AK K S + + + VV Q G +++D F ++L HF
Sbjct: 787 PLVMAKSGSKGSEINV-------AQMVAVVGQQIIGGSRVAD--GFQDRSL-----PHFH 832
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ P P +K G + F+ GL P E + H++S RE +V ++ +E G + + LM
Sbjct: 833 KNAPQ----PPSK-GFVGNSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMK 887
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + +PV
Sbjct: 888 SLEDLSTRYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAKPV 929
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P LG + GKC++C S
Sbjct: 23 GIKFGIQSNQDIANQAVLEVSDRLLYDVDNNRAPFQHGPLDPRLGTSSKIGKCDTCQESL 82
Query: 65 PGKCEGHFGYIELPIPIYHPSHIS 88
C GHFG++ LP+P +H ++
Sbjct: 83 Q-NCTGHFGHVRLPLPAFHIGYLG 105
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 174/695 (25%), Positives = 299/695 (43%), Gaps = 116/695 (16%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS------------IAMLKKVLKQVEII 186
P+D YI +Y+ VPP C+ P ++ DL+ +A++ + + +E+I
Sbjct: 255 PED-YIWQYISVPPPCIR-PSVASEAGNNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK 246
S N+E L AV Y+ + + G Q K +
Sbjct: 313 SS------NWEV-------LGQAVALYINSQAPGMQTIGSKPIRGFVQ----RLKGKQGR 355
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--- 303
R K FS R+VI D R++E+ VP ++A ++++ ERV +N+ ++++ +
Sbjct: 356 FRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIING 415
Query: 304 ------DNKLCLTYSDGSS-SYSLR-----EGSKGHTF-LRPGQVVHRRIMDGDTVFINR 350
N L + +GS+ SL E K + L+ G +VHR + DGD V NR
Sbjct: 416 SKLHPGANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNR 475
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ HK S+ V V T ++N +C P +ADFDGD ++L PQ+ A+ E LEL S
Sbjct: 476 QPSLHKLSIMCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMS 535
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPL----PRPA 464
V+K L++ NG + D + + ++ + +++ + FTQ ++ + L P P
Sbjct: 536 VKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPT 595
Query: 465 LSKARCSARWTALQILQSVLPPGFDS---------C------------------GDRYL- 496
+ K WT QI ++ P +S C D YL
Sbjct: 596 IWKP--VRLWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLV 653
Query: 497 IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SE++ G FD++T+ N + I + GPEE + + L + L GFS+
Sbjct: 654 IQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLG 713
Query: 556 LEDFSLSKAALWNIQKEIQALYSL--LYHRMSTQNEL-----------VDLQIENHIRHV 602
+ D + ++ Y ++ ++ + +L ++ +I + V
Sbjct: 714 INDVIPGPILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDV 773
Query: 603 KMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD----RGKFYSKTLV 654
+ V K + + + + S +V V Q +G Q+ R F ++L
Sbjct: 774 REAVGKICMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSL- 832
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + N P+ G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 833 ----PHFRK---KSKNPPSK--GFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD +VRN I+QF Y
Sbjct: 884 YMARRLMKALEDLCTHYDLSVRNSVG-GIVQFQYG 917
>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
Length = 871
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/633 (24%), Positives = 278/633 (43%), Gaps = 77/633 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 73 DLTFKLADVIKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 131
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 132 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRS 181
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 182 IARTLSYPEIVTPYNIHRLTEYVINGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYG 241
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 242 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 301
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 302 HVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 359
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDR-------Y 495
+ P +P+PA+ K + WT Q++ +P G FD
Sbjct: 360 NILYWIPGWDGVIPKPAILKPK--PLWTGKQMVSMAIPKGIHLQRFDDGNSMLSPKDTGM 417
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP F ++Q ++ L +GFS+
Sbjct: 418 LIINGEIMFGVVDKKTVGATGGGLIHTVMREKGPAICATLFGNIQKVVNYWLLHNGFSIG 477
Query: 556 LEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNELVD--------------LQIEN 597
+ D + + +I I Q + ++ + QN L ++ N
Sbjct: 478 IGDTIADASTMRDITNTISEAKQKVQEIIIE--AQQNTLSPEPGMTLRESFEHNVSRVLN 535
Query: 598 HIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVED 656
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 536 QARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADR 594
Query: 657 IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTL 716
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 595 SLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 649
Query: 717 FKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L D+++ YDGT RN + IIQF Y
Sbjct: 650 QRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 681
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 193/755 (25%), Positives = 326/755 (43%), Gaps = 109/755 (14%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL+I L +++ +I++ + +
Sbjct: 257 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTIK-LTEIVWTSSLIKAGLEKGISINNMM 314
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL V Y+ + G + V G Q K + R
Sbjct: 315 EHWDYLQLTVAMYINADSVNPAMLPGASSGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 370
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +T+ E+V +N LQELV N
Sbjct: 371 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMNGPNIHPG 430
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + + +LR G K L+ G +V R + DGD V NR P+ H+ S+ +
Sbjct: 431 ANYLLKKNEEARRNLRYGDRLKLAKNLQYGDIVERHLEDGDVVLFNRQPSLHRLSILSHY 490
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 491 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 550
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTAL 477
+ D + S + K F D+A FTQ L+M + L P PA+ K WT
Sbjct: 551 IIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGNLQFDIPPPAIMKP--YYLWTGK 608
Query: 478 QILQSVLPP--------GFDSCGDRYLIKKSEVLKGDFDR----------DTIPSVINEI 519
Q+ ++ P D+ Y+ KS+ L + R + + V+++
Sbjct: 609 QLFSLLIKPNHKSPVVINLDAKNKVYIPPKSKSLPNEMSRNDGFVIIRGSNILSGVMDKS 668
Query: 520 VT------SIFF----EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
V S+F+ + GP+E + + L L GFS+ + D ++ A I
Sbjct: 669 VLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGISD--VTPADDLKI 726
Query: 570 QKE--IQALY--------SLLYHRMSTQ-----NELVDLQIENHIRHVKMLVAKFILKS- 613
+KE ++ Y S ++ TQ E ++ +I + V+ V +
Sbjct: 727 KKEELVEIAYAKCDDLIDSYNKGKLETQPGCNEEETLEAKIGGLLSKVREEVGDVCINEL 786
Query: 614 ---------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+T G + + S + VV Q G ++ D F ++L HF
Sbjct: 787 DNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF--- 836
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 837 -PKNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 894
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
D+ YD TVR SN I+QF Y + + + +PV N ++ L+
Sbjct: 895 EDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPMEMEGSAQPVNF-------NRSWDHALNI 946
Query: 785 SPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLN 819
+ +NN L+ ++ + + +P++ R++ Y N
Sbjct: 947 T-FNNNERGLLPYQVMKKTNEVLNPLEERLVRYDN 980
>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
Length = 1360
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 193/812 (23%), Positives = 344/812 (42%), Gaps = 147/812 (18%)
Query: 45 NPFLGLPLEFGK-CESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL------------- 90
+P LG P E G C +CG C GHFG+I+L +PI+H ++
Sbjct: 61 DPKLG-PYEKGNLCPTCGNDRIS-CVGHFGHIKLALPIFHTGYLPHTYNLLQMICKGCSR 118
Query: 91 -----------------KLTMYAF---QLQIKNDGVAQRLLSSC-----CEVKEMLKRIP 125
K+ + F + + KN + + KE+ IP
Sbjct: 119 VLLEDDVDEKEYNGPIKKVGFHKFLHERYKFKNTATKTSRIQDHPSQMQFKAKELFDNIP 178
Query: 126 EETRKKL--AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQV 183
+E L A P D IL +PV P+ + SD + D A L +LK
Sbjct: 179 KEDYPLLCMAVDSVHPSD-LILTQIPVSPSVIRPSVTSDIRQGTNEDDLTASLMHILK-- 235
Query: 184 EIIRSSRSGTPNFESQEVESNDL---QLAVGQYLEVRGT-----AKSSRDVDA---RFGV 232
I S E ++ D+ AVG +V + S +++A +F +
Sbjct: 236 --INSG------LERAILDGKDIAGRTSAVGPSWDVLQSLHALMINSGVNLNAFPSQFRI 287
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
P + L+ + F + G F++RSVI+ D R++++G+P ++A+++TF
Sbjct: 288 KDTPRQSLVQRLKGKQGRFRQNLQGKRVNFTARSVISPDPNLRIDQVGIPIDVAKKLTFA 347
Query: 289 ERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFI 348
E+V +NIN ++ LV N G++ + G K HT +HR + DGD V
Sbjct: 348 EQVTRYNINQMKTLVKNG---GEYPGANEILYKNGMKNHT-------IHRHLHDGDIVLF 397
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ H+ S+ + V V T + N +C P +ADFDGD +++ PQ+ A++E + L
Sbjct: 398 NRQPSLHRQSMMSHQVKVMPWKTFRFNECVCAPYNADFDGDEMNVHLPQTNEARSEAMVL 457
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSP-----LP 461
V+ L+ +G + D + ++ ++ +K +F + F + + +P
Sbjct: 458 MGVKSNTLTCRSGEPLVASIQDFITAMYLLTQKDVFFTHQEFLRLITTVTARNKGRLRIP 517
Query: 462 RPALSKARCSARWTALQILQSVLPP-----------GFDS------CGDRY-LIKKSEVL 503
P + R + W+ Q+ S + G+ C D + LI+ SE++
Sbjct: 518 HPCI--LRPTPLWSGKQVFSSEIEKGKWIWRGTACVGYSKNSPEMICNDSWVLIRNSELV 575
Query: 504 KGDFDRDTIPS----VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
G D++++ S + ++T + E+ + + + P + N GFS+ + D
Sbjct: 576 AGTMDKNSLGSGSKKQVFYMLTRDYGEEAAAQAMWRMCRIGPRYLSN---RGFSIGIGDV 632
Query: 560 SLSKAALWNIQKEIQALYSLL-YHRMSTQNELVDLQ--------IENHIRH--------- 601
S+ L K I Y + H ++ ++ + LQ +EN ++
Sbjct: 633 WASENLLDKKMKVIGEQYRKVDEHILAKKHNKLKLQPGCTADETLENIVQKELSKIRDDA 692
Query: 602 VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDI 657
K A+ ++ L + S ++ + Q +G Q+ + F +++L
Sbjct: 693 AKACFAELSKFNTPLNMALCGSKGSNIN-IAQMVACVGQQVLSGSRIPNGFEARSL---- 747
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HFER D P ++ G ++ FF GL P E H++ RE +V ++ + G +
Sbjct: 748 -PHFER----DSKDPKSR-GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTASTGYMQ 801
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L + + YDGTVRN + +IQF Y
Sbjct: 802 RRLVKALEGLCVQYDGTVRNT-DDRVIQFTYG 832
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 162/627 (25%), Positives = 276/627 (44%), Gaps = 65/627 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 266 DLTYKLADILKANANVQRCEQEGAPAHVVNEFESL-LQYHVATYMDNDIAGQPQALQK-- 322
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 323 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAR 377
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V NI+ L E V N D LR + G L+ G V
Sbjct: 378 TLTYPEIVTPFNIHKLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 437
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 438 ERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 497
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L V Q++S + + + D L ++ M + F+D + +
Sbjct: 498 QSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFW 557
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPPG-----FD-----SC---GDRYLIKK 499
+ +P PA+ K + WT Q++ +P G FD +C Y+I
Sbjct: 558 IPNWDGVVPTPAILKPK--PLWTGKQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYII-D 614
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
+++ G D+ TI + +V +I EKG FF ++Q ++ L GFS+ + D
Sbjct: 615 GQIMWGVVDKKTIGATGGGLVHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGFSIGIGDT 674
Query: 560 SLSKAALWNIQKEIQ----------------ALYSLLYHRMSTQNELVDLQIENHIRHVK 603
A + ++ + I+ L + M E ++ N R
Sbjct: 675 IADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGMTMRESFEHNVSRVLNQARDTA 734
Query: 604 MLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
A+ LK + + ++ + S + + Q + +G Q+ + GK + HF
Sbjct: 735 GRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQMVE-GKRVPFGFADRTLPHFC 793
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 794 KD-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 848
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGTVRN + +IQF Y
Sbjct: 849 ALEDVMVQYDGTVRNSLGD-VIQFVYG 874
Score = 46.6 bits (109), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDCSIS----------HASQLANPFLGLPLEFGKCESCGTSEPG 66
++FGL + +E+ S++ L +P LG KC++CG
Sbjct: 19 VQFGLLSPEEVKAMSVAKIEFPETMDETRQRPRVGGLNDPRLGTIDRNFKCQTCGEGM-A 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 78 ECPGHFGHIELAKPVFHIGFIAKIK 102
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/653 (24%), Positives = 284/653 (43%), Gaps = 111/653 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 190 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 243
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 244 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 303
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V N L++LV N ++ L + ++S +L+ G K
Sbjct: 304 TYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWK--- 360
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P+ V V T ++N + P +ADFDG
Sbjct: 361 -------VERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDG 413
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 414 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 473
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 474 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQVISMVLPPALNLVRIDGKPSQPPGER 531
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L I +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 532 FAPAGDSGLFISDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVINYW 591
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI----------------------------QALYS 578
L +GFS+ + D + + I+ E+ + S
Sbjct: 592 LLHNGFSIGIGDTVPDVSTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 651
Query: 579 LLYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 652 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQS 704
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ F +TL HF + +Y A G ++ + GL P E H+
Sbjct: 705 VEGKRIP--FGFKYRTL-----PHFAKD-----DYSAAPKGFVENSYLRGLTPTEFFFHA 752
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 753 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 804
>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 989
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 284/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI L++LV N + + Y +RE ++ LR G
Sbjct: 301 TYPETVTRFNIERLKQLVTNGPQM---HPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDIILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKPGQPPVERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVAAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDQAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
K+ +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 FGSKY--RTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N ++QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-VVQFIYG 794
>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
Length = 870
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 140/544 (25%), Positives = 249/544 (45%), Gaps = 51/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++++GVP IA+ +++ E V +NI L ELV N
Sbjct: 148 RLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLSYPEIVTPYNIQKLTELVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R +MD D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDEDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ ++ +V Q++S
Sbjct: 268 MMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSA 472
+ + + D L ++ M + F++ + Q + M P +P+PA+ K +
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFIE--YDQVMNMCFWIPNWDGVVPQPAILKPK--P 383
Query: 473 RWTALQILQSVLPPG----------FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
W+ QIL +P G LI E++ G ++ T+ + ++ +
Sbjct: 384 LWSGKQILSMCIPRGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHT 443
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
+ EKGP + F ++Q ++ L +GFS+ + D A + I + I +
Sbjct: 444 VMREKGPTVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSATMKTITETIAVAKEKVQE 503
Query: 583 R-MSTQNELVDLQ---------------IENHIRHVKMLVAKFILK-SSTLGYLIDSKSD 625
+ QN L++ + + N R A+ LK S+ + ++ + S
Sbjct: 504 VIIDAQNNLLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVTAGSK 563
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q+ + GK + + HF + +Y G ++ +
Sbjct: 564 GSYINISQMSACVGQQIVE-GKRINFGFADRSLPHFTKD-----DYSAESKGFVENSYLR 617
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H+++ RE ++ ++ +E G + + L+ L D+++ YDGT RN + IIQ
Sbjct: 618 GLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGD-IIQ 676
Query: 746 FDYA 749
F Y
Sbjct: 677 FLYG 680
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 165/673 (24%), Positives = 295/673 (43%), Gaps = 90/673 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 186 DLTYKLADILKANINVQKFEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 242
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 243 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIAR 297
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS----------KGHTFLRPG 333
+T+ E V +NI L E+V N + Y +RE G L+ G
Sbjct: 298 TLTYPEIVTPYNIQKLTEMVRNG---PNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYG 354
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 355 WKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNL 414
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ EL +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 415 HVPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIE--YDQVM 472
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG---------FDSCGDR-YLI 497
M P +P+PA+ K + W+ QIL +P G S D LI
Sbjct: 473 NMCYWIPDWDGVVPQPAILKPK--PLWSGKQILSLCIPNGIFLQRLDGSLTSPKDSGMLI 530
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G ++ T+ + ++ + EKGP + F ++Q ++ L +GFS+ +
Sbjct: 531 VNGEIMFGVVNKATVGASAGGLIHTTMREKGPTTCAKMFGNIQKVVNYWLLHNGFSIGIG 590
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ---------------IENHIRH 601
D + I + I+ + + Q L++ + I N R
Sbjct: 591 DAIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMTLRESFEQKVSKILNEARD 650
Query: 602 VKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK S+ + ++ + S + + Q + +G Q+ + GK + + H
Sbjct: 651 AAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPH 709
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 710 F-----TTDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 764
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA 780
+ L D+++ YDGT RN + +IQF Y + L AT + K
Sbjct: 765 LKALEDIMVHYDGTTRNSLGD-VIQFIYGEDG---------------LDATTVE----KQ 804
Query: 781 VLDSSPSSNNSWE 793
+D+ P SN ++E
Sbjct: 805 TVDTIPGSNAAFE 817
>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus
glaber]
Length = 1392
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 215/806 (26%), Positives = 336/806 (41%), Gaps = 126/806 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLIVLNLFKRIPTEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA- 361
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 362 -LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
+ V V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ N
Sbjct: 477 LVRVRVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRN 536
Query: 421 GNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCS 471
G + D L ++ K F D+A Q+ L LP PA+ K
Sbjct: 537 GEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKVRVRLPHPAILKP--V 594
Query: 472 ARWTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDR 509
WT QI +L P D+ CG D Y+ I+ SE++ G D+
Sbjct: 595 TLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDK 654
Query: 510 DTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED---------- 558
T+ S N I + + G E + L L L GFS+ + D
Sbjct: 655 GTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKA 714
Query: 559 -FSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK--- 612
+ L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 KYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELD 774
Query: 613 ---SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
S L SK S + V Q G ++ D F +++L HFE+
Sbjct: 775 KSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHS 827
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L
Sbjct: 828 KL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 882
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS 785
D+ YD TVR+ + IIQF Y + ++ EP+ Y + +
Sbjct: 883 DLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCPSEPA 941
Query: 786 PSSNN----SWELMK--EILLCRVSF 805
S N+ S +MK E L C+ SF
Sbjct: 942 LSKNDLALSSEAIMKKSEFLCCQDSF 967
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 176/746 (23%), Positives = 302/746 (40%), Gaps = 89/746 (11%)
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
P K +GH G Y P +I L + A D +++ S V E+ K I
Sbjct: 172 PNKKQGHGGCGR-----YQP-NIRRAGLDLSAEWKHANEDTQEKKIALSAERVYEIFKHI 225
Query: 125 PEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQV 183
+E + Y D + LPVPP C+ + G + DL+ + +
Sbjct: 226 SDEECFIMGMDPKYARPDWMVATVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNN 285
Query: 184 EIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGV 232
E+ R+ ++G F + ND+ G ++ + K + + AR
Sbjct: 286 ELARNEQAGAAAHVLSENTKMLQFHVATLVDNDMP---GMPRAMQKSGKPLKAIKARL-- 340
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
K ++R + K FS+R+VIT D R++++GVP IAQ +TF E V
Sbjct: 341 --------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVT 392
Query: 293 VHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDT 345
N+ +QELV D LR K L+ G V R I DGD
Sbjct: 393 PFNLENMQELVRRGNSQYPGAKYIVRDNGERIDLRYHPKSSDLHLQCGYRVERHIKDGDL 452
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V NR PT HK S+ V V T ++N + P +ADFDGD ++L PQS+ +AEV
Sbjct: 453 VIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEV 512
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLP 461
+ +Q+++ + + D L +++ M ++ F++K + +F +P
Sbjct: 513 ENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEKEQMMNILLFLPIWDGKMP 572
Query: 462 RPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKS 500
+PA+ K + WT QI ++P + S GD + +++
Sbjct: 573 QPAILKPK--PLWTGKQIFSLIIPGNVNMIRTHSTHPDDENSGPYNWISPGDTKVMVEHG 630
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G + T+ + ++ E G EE F+ ++Q ++ L +G S+ + D
Sbjct: 631 ELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNIQTVVNTWLLLEGHSIGIGDTI 690
Query: 561 LSKAALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------K 603
IQK I+ + H M T + EN + +
Sbjct: 691 ADPNTYIEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTG 750
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
K + + + L ++ + S + + Q +G Q + GK + HF
Sbjct: 751 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-- 807
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 808 ---IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKA 864
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
+ V++ YDGTVRN +IQ Y
Sbjct: 865 MESVMVHYDGTVRNSVGQ-LIQLRYG 889
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 169/641 (26%), Positives = 285/641 (44%), Gaps = 89/641 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ + V E+ R ++G P E + LQ V Y+ E+ G ++ +
Sbjct: 267 DLTHKLADIVKANKELQRQEKNGAPAHIITEA-TQFLQFHVATYVDNEIPGLPQAQQR-- 323
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + + L+ ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 324 -----SGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIAL 378
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK-GHTFLRPGQV 335
+T+ E V NI+ ++EL+ N + DG+ + LR K T L G
Sbjct: 379 NLTYPETVTPFNIDKMRELIRNGPNEHPGAKYIIREDGTR-FDLRFVKKVSDTHLECGYK 437
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R I DGD V NR P+ HK S+ + V T ++N + P +ADFDGD ++L
Sbjct: 438 VERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQ+L +AEV+E+ V +Q++S + + + D LL ++ K+ F+++ + M
Sbjct: 498 PQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNILM 557
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLP---------------PGFDSCGD-RY 495
+ S +P PA+ K + WT Q+ ++P P S GD R
Sbjct: 558 WLPSWDGKVPPPAILKPK--QLWTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRV 615
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
+I++ E+L G + ++ + I+ + E G + F D Q ++ L GF++
Sbjct: 616 IIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMG 675
Query: 556 LEDF-----SLSKAAL----------------WNIQKEIQALYSLLYHRMSTQNELVDLQ 594
+ D ++ K L N Q E Q S+ M T + V+ Q
Sbjct: 676 IGDTIADAQTMEKVTLTISSAKNQVKELIIKAQNKQFECQPGKSV----METFEQKVN-Q 730
Query: 595 IENHIRHVKMLVAKFIL-KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----F 648
+ N R A+ L +++ L ++ + S + + Q +G Q + GK F
Sbjct: 731 VLNKARDTAGSSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVG-QQNVEGKRVPFGF 789
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
S+TL HF + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 790 QSRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 839
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ + DV I YD TVRN + +IQF Y
Sbjct: 840 KTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYG 879
>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
gattii WM276]
gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1463
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 177/695 (25%), Positives = 294/695 (42%), Gaps = 116/695 (16%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS------------IAMLKKVLKQVEII 186
P+D YI +Y+ VPP C+ P ++ DL+ +A++ + + +E+I
Sbjct: 255 PED-YIWQYISVPPPCIR-PSVASEAGNNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK 246
S N+E L AV Y+ + + G Q K +
Sbjct: 313 SS------NWEV-------LGQAVALYINSQAPGMQTIGSKPIRGFVQ----RLKGKQGR 355
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--- 303
R K FS R+VI D R++E+ VP ++A ++++ ERV +N+ +++ +
Sbjct: 356 FRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIING 415
Query: 304 ------DNKLCLTYSDGSS-SYSLR-----EGSKGHTF-LRPGQVVHRRIMDGDTVFINR 350
N L + +GS+ SL E K + L+ G VVHR + DGD V NR
Sbjct: 416 SKLHPGANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNR 475
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ HK S+ V V T ++N +C P +ADFDGD ++L PQ+ A+ E LEL S
Sbjct: 476 QPSLHKLSIMCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMS 535
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPL----PRPA 464
V+K L++ NG + D + + ++ + +++ + FTQ + + L P P
Sbjct: 536 VKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPT 595
Query: 465 LSKARCSARWTALQILQSVLPPGFDS---------C------------------GDRYL- 496
+ K WT QI ++ P +S C D YL
Sbjct: 596 IWKP--VRLWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLV 653
Query: 497 IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SE++ G FD++T+ N + I + GPEE + + L + L GFS+
Sbjct: 654 IQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLG 713
Query: 556 LEDFSLSKAALWNIQKEIQALYSL------LYHRMSTQN-------ELVDLQIENHIRHV 602
+ D + ++ Y L R +N ++ +I + V
Sbjct: 714 INDVIPGPILHASKDARVEKAYGECDVFIDLAKRGKLENAPGCDQEATLESKISKTLSDV 773
Query: 603 KMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD----RGKFYSKTLV 654
+ V K + + + + S +V V Q +G Q+ R F ++L
Sbjct: 774 REAVGKICMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSL- 832
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + N P+ G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 833 ----PHFRK---KSKNPPSK--GFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD +VRN I+QF Y
Sbjct: 884 YMARRLMKALEDLCTHYDLSVRNSVG-GIVQFQYG 917
>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1541
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 176/691 (25%), Positives = 286/691 (41%), Gaps = 99/691 (14%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +Y+P PP C+ P ++ ++ D++ + + +L + S +
Sbjct: 253 GLDPTEGRPEMFLWQYIPAPPICIR-PSVAQENASNEDDITSKLSEIILYAGHLRESLKK 311
Query: 192 GT--PNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
G P Q LQL VG Y L G K R R Q
Sbjct: 312 GVSLPVIMEQ---WEFLQLQVGMYVNSDVPGLNQPGFGKPIRGFCQRLKGKQG------- 361
Query: 243 WLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQEL 302
+ R K FS R+VI+ D + ++ VP +A+ +T+ ERVN NI L++
Sbjct: 362 ---RFRGNLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQR 418
Query: 303 VDN-------KLCLTYSDGSSSYSLREGSKG-----HTFLRPGQVVHRRIMDGDTVFINR 350
V N + + DG+ ++L+ G++ L+ G +V R + D D V NR
Sbjct: 419 VINGPNNWPGAMGIIKKDGAK-FNLKIGTEALRERHANDLQFGDIVERHLEDNDIVLFNR 477
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ HK S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE + L
Sbjct: 478 QPSLHKLSIMSHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMG 537
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSP----LPRPA 464
V+ L++ NG + D + + ++ K+F + FT L LP PA
Sbjct: 538 VKHNLITPKNGEPIIAATQDFITAAYLLSSKDKFFDRETFTYICTQMLLGETHLDLPPPA 597
Query: 465 LSKARCSARWTALQILQSVL--------------------------PPGFDSCGDRYLIK 498
+ K RC WT QI ++ PP D +++
Sbjct: 598 IMKPRCL--WTGKQIFNVLMRPNKECPVLVNLDAKNKVFSKKKDGHPPDMDIDDAFLVVR 655
Query: 499 KSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
SEV+ G D+ T+ N + I + GP+ + L L L GFS+ +
Sbjct: 656 NSEVMCGRMDKATVGGGKKNSVFYVILRDYGPDYAAAAMNRLAKLCARMLTLRGFSIGVG 715
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRMST-------------QNELVDLQIENHIRHVKM 604
D S + K ++ Y + T E ++ I + V+
Sbjct: 716 DVWPSGPLTAHKAKLVEDAYKRCDELIETYRQGKLEKAPGCSMEETLENMISGILSQVRQ 775
Query: 605 LVAKFILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
+ + S+ LI +KS S S V Q +G Q+ GK + H
Sbjct: 776 QAGNYCVDSLSNNNAPLIMAKSGSKGSDINVAQMIACVGQQIIS-GKRVPDGFQDRSLPH 834
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + + P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + L
Sbjct: 835 FHK----NARQPPSK-GFVRNSFYTGLTPSEFLFHAISGREGLVDTAVKTAETGYMSRRL 889
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVN 751
M L D+ YD TVR N ++QF Y +
Sbjct: 890 MKSLEDLSTQYDDTVRTSEGN-VVQFQYGAD 919
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 166/652 (25%), Positives = 275/652 (42%), Gaps = 94/652 (14%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGT 219
DG S DL+ + + V + R G P E E LQ V Y++ + G
Sbjct: 189 DGSSRGEDDLTHKLADILKANVNVKRCEAEGAPAHVIDEFEQL-LQFHVATYMDNDIVGQ 247
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + +A L+ ++R + K FS+R+VITGD ++E+
Sbjct: 248 PQALQK-------SGKPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEV 300
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHT 328
GVP IA+ +T E V +NI LQELV N D LR + G
Sbjct: 301 GVPRSIARNLTVPEMVAPYNIGRLQELVRNGPNQHPGAKYIIRDTGERIDLRYHQRAGDI 360
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L+ G V R + +GD V NR P+ HK S+ V V T ++N + P +ADFDG
Sbjct: 361 PLQYGYKVERHLDNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDG 420
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D +++ PQS K E+ E+ V KQ++S + + + D L + K + F+DKA
Sbjct: 421 DEMNMHVPQSEETKVEIQEICMVPKQIISPQSNKPVMGIVQDTLCGVRKFTNRDCFMDKA 480
Query: 448 FTQQLAMFA------------LSPLPRPALSKARCSARWTALQILQSVLPPGFD------ 489
+ M L PLP WT Q+L V+P G +
Sbjct: 481 LVMNILMLVDDWNGVIXTPAILKPLPL-----------WTGKQLLSMVIPKGINCITYHS 529
Query: 490 ----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDS 538
S GD + +++ E++ G + T+ + V +I E GPE +F
Sbjct: 530 AHPDDEKSDISPGDTKVVVEDGELISGIVCKKTVGASNGGWVHTIMNEHGPEIAKKFLCG 589
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL------ 590
Q ++ L +GFS+ + D + +I + I + + + + Q++L
Sbjct: 590 TQAVVNYWLLQNGFSIGIGDTIADEKTAEHITETIDSAKQRVSEIILAAQQDKLECAPGM 649
Query: 591 ---------VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ 641
V ++ H + + + + + ++ S S + + Q + +G Q
Sbjct: 650 TIRETFESKVSRELNRARDHSGQSAERSLKEENNVKQMVVSGSKGSFVNISQMSACVGQQ 709
Query: 642 LSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSI 697
+ + F +TL HF + +Y G ++ + L P E H++
Sbjct: 710 DVEGKRIPFGFKFRTL-----PHFTKD-----DYGPESKGFVENSYLRRLTPQEFFFHAM 759
Query: 698 STREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ L DV++ YDGTVRN N IIQF Y
Sbjct: 760 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGN-IIQFCYG 810
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 178/743 (23%), Positives = 309/743 (41%), Gaps = 79/743 (10%)
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLK 122
++P K GH G Y PS + L + A + ++ +++ S V E+LK
Sbjct: 164 ADPNKKAGHGGCGH-----YQPS-LRRTGLDITAEWKHVNDESQEKKIFVSAERVWEILK 217
Query: 123 RIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK 181
I +E L F + D I+ +PVPP + + G + DL+ + +
Sbjct: 218 HITDEECFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKA 277
Query: 182 QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNST 239
E++R+ SG E LQ V +++ + G ++ + S P
Sbjct: 278 NNELMRNEASGAAAHVITE-NIKMLQFHVATFVDNDMPGMPRAMQK-------SGKPLKA 329
Query: 240 TKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN 295
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V N
Sbjct: 330 VKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFN 389
Query: 296 INYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFI 348
I +QELV D LR K L+ G V R + D D V
Sbjct: 390 IERMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIF 449
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 450 NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 509
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPA 464
+Q+++ + + D L +++ M K+ F++K + MF + +P+P
Sbjct: 510 HITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWDGKMPQPC 569
Query: 465 LSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVL 503
+ K + WT QI ++P + S GD + +++ +++
Sbjct: 570 ILKPK--PLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGQLI 627
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G + T+ + ++ +F E G E F+ ++Q ++ L +G S+ + D
Sbjct: 628 MGILCKRTLGASAGSLLHIVFLELGHETAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADP 687
Query: 564 AALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KMLV 606
IQ+ I+ + H M T + EN + +
Sbjct: 688 QTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSA 747
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 748 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF----- 801
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 802 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 861
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN +IQ Y
Sbjct: 862 VMVHYDGTVRNSVG-QLIQLRYG 883
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 177/709 (24%), Positives = 303/709 (42%), Gaps = 101/709 (14%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVS 165
A+R+LS +LKRI +E + L Y D IL+ LP+PP + + D S
Sbjct: 133 AERVLS-------VLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSS 185
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRGT 219
DL+ + + + R R+G+P E + LQ + Y + R T
Sbjct: 186 RSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRAT 244
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+S R + + S KA ++R + K FS+R+VIT D ++++GVP+
Sbjct: 245 QRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 297
Query: 280 EIAQRITFEERVNVHNINYLQELVD--------------------NKLCLTYSDGSSSYS 319
IA +T+ E V +NI L+ELV+ +L L Y SS +
Sbjct: 298 TIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 357
Query: 320 LREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 379
L G K V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 358 LELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 407
Query: 380 GPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMF 439
P +ADFDGD +++ PQS +AEVLEL V K ++S + + D+LL + +
Sbjct: 408 SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKIT 467
Query: 440 KK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPGFD------ 489
K+ F+ K + M+ +P P + K WT Q+ ++P +
Sbjct: 468 KRDTFIAKDVFMNILMWWEDFDGKVPAPTILKP--EPLWTGKQVFNLIIPKQINLIRYSS 525
Query: 490 ----------SCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDS 538
+ GD + I+K E+L G + T+ + ++ ++ E GP+ +F
Sbjct: 526 WHNEAERGPITPGDTMVRIEKGELLTGTLCKKTLGTGTGSLIHVVWEEVGPDAARKFLGH 585
Query: 539 LQPL----LMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE----- 589
Q L L++N F+ G ++ D S + I + + L+ + E
Sbjct: 586 TQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGR 645
Query: 590 -LVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGL 640
++D EN + K + +S+ L ++ + S + + Q +G
Sbjct: 646 TMMD-SFENRVNQTLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG- 703
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK ++ HF + +Y G ++ + GL P E H++ R
Sbjct: 704 QQNVEGKRIPFGFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGR 758
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 759 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 189/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLAKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + F + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRFARPEWMIVTVLPVPPLSVRPAVVMQGSAXXQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa [Oryctolagus cuniculus]
Length = 1390
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 204/760 (26%), Positives = 318/760 (41%), Gaps = 122/760 (16%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNREVEPLLGRAQENLNPLIVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGP--EVHP 416
Query: 314 GSS-------------SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
G++ Y RE K L+ G VV R ++DGD V NR P+ HK S+
Sbjct: 417 GANFIQQRHMHMKRFLKYGNRE--KMAQELKYGDVVERHLIDGDVVLFNRQPSLHKLSIM 474
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
A V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ N
Sbjct: 475 AHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRN 534
Query: 421 GNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCS 471
G + D L ++ K F D+A Q+ L LP P + K
Sbjct: 535 GEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--V 592
Query: 472 ARWTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDR 509
WT QI +L P DS CG D Y+ I+ SE++ G D+
Sbjct: 593 TLWTGKQIFSVILRPSDDSPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDK 652
Query: 510 DTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED---------- 558
T+ S N I + + G E + L L L GFS+ + D
Sbjct: 653 GTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKA 712
Query: 559 -FSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK--- 612
+ L A + I+AL + L T E ++ I + ++ L+
Sbjct: 713 KYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELD 772
Query: 613 ---SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
S L SK S + V Q G ++ D F +++L HFE+
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHS 825
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L
Sbjct: 826 KL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 880
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
D+ YD TVR+ + IIQF Y + ++ EP+
Sbjct: 881 DLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/549 (27%), Positives = 245/549 (44%), Gaps = 59/549 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V +NI L + V N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQN 408
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDGS + G L G V R ++DGD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P PA+ K R RW
Sbjct: 529 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPR--PRW 586
Query: 475 TALQILQSVLPP-----------GFDSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QI+ V+P G D+ LI++ EV+ G + + + IV
Sbjct: 587 TGKQIISMVVPKIINLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHL 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
+ E GP ++F + Q ++ L +G S+ + D A + +Q I + +
Sbjct: 647 CYNELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQ 706
Query: 583 --RMSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------SKS 624
M+T N+L L EN + + A+ +ST L D S S
Sbjct: 707 LTDMATNNQLEPLPGMNIRETFENKVSKA-LNTARDKAGTSTESSLKDINNAVTMALSGS 765
Query: 625 DSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ + Q +G Q+ + + F +TL HF + D P A+ G ++
Sbjct: 766 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHFTK----DDYSPEAR-GFVE 815
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H+++ RE ++ ++ +E G + + L+ L D YDGTVRN
Sbjct: 816 NSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLG 875
Query: 741 NSIIQFDYA 749
+ IIQF Y
Sbjct: 876 D-IIQFVYG 883
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ + L +P LG KC++CG +
Sbjct: 19 IQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTCGENM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I +K
Sbjct: 78 ECPGHFGHIELARPVYHPGFIKRVK 102
>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora
passalidarum NRRL Y-27907]
Length = 1445
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 200/784 (25%), Positives = 335/784 (42%), Gaps = 124/784 (15%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI YLP PP C+ P + + DL++ L +++ +IR+ + + +
Sbjct: 255 YIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSLIRAGIEKGISINNLMEQ 312
Query: 203 SNDLQLAVGQYLE-----------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLF 251
+ LQL+V Y+ AKS++ + G Q K + R
Sbjct: 313 WDYLQLSVAMYINSDSANPALLPNAGAGAKSAKPIR---GFCQ----RLKGKQGRFRGNL 365
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV----DNKL 307
K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+L+ D
Sbjct: 366 SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGPDVHP 425
Query: 308 CLTY---SDGSSSYSLREGSKG--HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
Y + + +LR G++ LR G VV R I DGD V NR P+ H+ S+ +
Sbjct: 426 GANYIMKQNELAKRNLRFGNREILAKNLRIGDVVERHIEDGDVVLFNRQPSLHRLSILSH 485
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 486 YAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 545
Query: 423 LNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSP----LPRPALSKARCSARWTA 476
+ D + S + K F D+A F Q L+M + + LP P + K WT
Sbjct: 546 PIIAATQDFITGSYLISHKDSFFDRASFVQLLSMMSDADVQFDLPPPTIFKP--VMLWTG 603
Query: 477 LQIL--------------------QSVLPPGFD-----SCGDRY-LIKKSEVLKGDFDRD 510
Q+ ++ +PP S D + +I+ S++L G D+
Sbjct: 604 KQVFSLLIKPNKKSNVIINLDAKNKTFIPPAKGLPSEMSPNDGFVIIRGSQILSGLMDKS 663
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
T+ + + +I + GP+E + + L L GFS+ + D +
Sbjct: 664 TLGDGKKHSVFYTILRDYGPQEAASAMNRMAKLCARYLGNRGFSIGINDVTPETKLKQKK 723
Query: 570 QKEIQALYSL------LYHR--MSTQ---NELVDLQI--------------ENHIRHVKM 604
+ ++ Y LY+R + TQ NE L+ E IR +
Sbjct: 724 ELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEECIRELDS 783
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+ A I+ +T G + + S + VV Q G ++ D F ++L HF +
Sbjct: 784 MNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL-----PHFTK- 833
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 834 ---NSKTPQSK-GFVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 889
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
D+ YD TVRN SN I+QF Y + + + +PV + AY D
Sbjct: 890 EDLSAQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPVNF---NRQWDHAYNLTYDG 945
Query: 785 SPSSNNSWE---LMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYC---QERAAYMVKN 838
+ +E L+ IL P++ ++I Y N GR+ Q+R Y+ +N
Sbjct: 946 DETGLLPYEIKRLVDSILT--------PLESKLIRYDN---LGRELADADQDRIEYIDQN 994
Query: 839 QLKR 842
+R
Sbjct: 995 DAER 998
>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
Length = 891
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 183/704 (25%), Positives = 309/704 (43%), Gaps = 77/704 (10%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDI 160
K +GV ++L +++E L++IP+ L F + + IL LPVPP + P I
Sbjct: 182 KENGVLEKL--DPMKIRERLEKIPDSDLVLLGWDPKFARPEWAILTVLPVPPPQVR-PSI 238
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
S D L +++ E +R++ SG P+ ++ + LQ V Y
Sbjct: 239 QLETGQRSEDDLTHKLVDIVRVNEKLRTAIESGAPSSVVDQL-WDLLQYHVATYFN--NE 295
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEI 275
+ V R G P T L+ F SG FSSR+VI+ D +NE+
Sbjct: 296 LPNLPPVKHRSG---RPLKTLAQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLSINEV 352
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKG 326
GVP +IA+ +T V N+ +++LV N + Y DG R+ +
Sbjct: 353 GVPIDIAKTLTVPMMVTEWNLELVRQLVLNGPEVWPGANYVIYPDGRRVDLRYFRDRREL 412
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L PG VV R +M+GD V NR P+ H+ S+ V V T +++ +C P +ADF
Sbjct: 413 ANKLAPGFVVERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADF 472
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDK 446
DGD ++L PQ+ A+AE L V+ +++ G + D + ++ +K D
Sbjct: 473 DGDEMNLHVPQNEEARAEARTLMIVQNHIITPRYGGPIIGARQDYITGGYLLTRK---DN 529
Query: 447 AFTQQLAMFALSP------LPRPALSKARCSARWTALQILQSVLPPGF---------DSC 491
++L + L+ + PA+ + WT Q++ +LP +SC
Sbjct: 530 LINKELLTYLLAAANYDGEIDEPAIMHPK--ELWTGKQVISMLLPKDLNWVQPTAIKESC 587
Query: 492 GDRY--------LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPL 542
+ Y +I + G D+ +I + ++ + + G + + DS+
Sbjct: 588 KEPYNCYTDEYIIIVNGYMATGVLDKKSIGAEQVDSLWHVVVKRYGNDYARRWVDSILRA 647
Query: 543 LMENLFADGFSVSLEDFSLSKAALWNIQK-----EIQAL-YSLLYHRMSTQNE---LVDL 593
L+ L GFS+ ++ + + + ++K E + L Y Y + E +D
Sbjct: 648 LLRFLDLRGFSMGIDSLEMPRESYMELEKLYEESERKVLDYIQKYKEGRLEAEPGLTIDE 707
Query: 594 QIENHI-------RHVKMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
+EN I R VA ++I K + + + ++ + Q LG Q + R
Sbjct: 708 TLENDITIELSRVREAAARVAERYINKDGEAYIMAKTGARGSIVNITQMVAMLG-QQTIR 766
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G+ + + +HFE P DL P AK G ++ F GL P E H+ R+ +V
Sbjct: 767 GERFKRGFAGRTTAHFE---PGDLG-PIAK-GFVRNNFKTGLTPLEFFFHAAGGRDGLVD 821
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ G + + L+ L+D+ + YDGTVRN S SIIQ YA
Sbjct: 822 TAVRTAQSGYMQRRLINALQDIYVTYDGTVRN-ASGSIIQTKYA 864
>gi|322704718|gb|EFY96310.1| DNA-directed RNA polymerase III [Metarhizium anisopliae ARSEF 23]
Length = 1447
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 176/703 (25%), Positives = 298/703 (42%), Gaps = 96/703 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ P ++ ++ DL+ + V I + +
Sbjct: 250 GLDPAEGRPEMFIWQFVPAPPVCIR-PSVAQDNASNEDDLTTKLADIVWVSGMIRSALQK 308
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G KS+R R Q
Sbjct: 309 GSP-IQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKSTRGFCQRLKGKQG--------- 358
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ E+VN NI L++ V
Sbjct: 359 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVR 417
Query: 305 NK---------LCLTYSDGSSSYSLREGSK--GHTFLRPGQVVHRRIMDGDTVFINRPPT 353
N + D ++LR G++ L G +V R + DGD V NR P+
Sbjct: 418 NGCDVWPGAQGILKKEDDSYYKFNLRFGNRDLAAKQLSYGDIVERHLEDGDVVLFNRQPS 477
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 478 LHKLSIMSHLAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKY 537
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-----PLPRPALSK 467
L + NG + D + + ++ K F D+ + M + +P PA+
Sbjct: 538 NLATPKNGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQGTKIEIPPPAIVA 597
Query: 468 ARCSARWTALQILQSVLPPGFD-------------------SCGDR------YLIKKSEV 502
+ A WT QI ++ P D C D +++ SEV
Sbjct: 598 PK--ALWTGKQIFSIMMRPNKDCSVKINLDAKCRAYKARPGQCPDMDPNDGWLVVRNSEV 655
Query: 503 LKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G D+ T+ S + I I + GP+E + + L L L GFS+ + D
Sbjct: 656 MCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSIGVGDVFP 715
Query: 562 SKAALWNIQKE--IQALYSLLYHRMST--QNEL-------VDLQIENHI----RHVKMLV 606
++ N++KE + Y + + T Q +L ++ +EN I V+
Sbjct: 716 TET--LNVEKENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQA 773
Query: 607 AKFILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+ + S LI ++S S S V Q +G Q+ G+ + HF
Sbjct: 774 GSYCIDTLSRNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIG-GQRVPDGFQDRSLPHFH 832
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ + P +K G +K F+ GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 833 K----NARQPPSK-GFVKNSFYTGLFPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 887
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + EPV
Sbjct: 888 SLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAEPV 929
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P LG + GKC++C S
Sbjct: 23 GIKFGIQSNQDIANQAVLEVSDRLLYDIENNRAPYRHGPLDPRLGTSSKSGKCDTCHDSL 82
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
C GHFG++ LP+P + HI L+ M Q K+ G R+L E + LK +
Sbjct: 83 Q-NCIGHFGHVRLPLPAF---HIGYLRFIMSILQEICKDCG---RVLLEEPERRSFLKEL 135
>gi|389626659|ref|XP_003710983.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
70-15]
gi|351650512|gb|EHA58371.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
70-15]
gi|440463479|gb|ELQ33059.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
Y34]
gi|440481206|gb|ELQ61814.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
P131]
Length = 1456
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 182/684 (26%), Positives = 290/684 (42%), Gaps = 85/684 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +YLP PP C+ P + S+ D++ L +++ +IR + S
Sbjct: 253 GLDPSEGRPEMFLWQYLPAPPICIR-PSVQQDTSSNEDDITTK-LAEIVHIAGLIRGALS 310
Query: 192 GTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG-VSQDPNSTTKAWLEKMR 248
++ + LQL + Y+ EV G + FG +++ K + R
Sbjct: 311 KGHPIQTIMEQWEFLQLQIAIYVNSEVPGLGQPG------FGKMTRGFCQRLKGKQGRFR 364
Query: 249 TLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL- 307
K FS R+VI D ++++ +P +A+ +T+ ERVN NI L+E V N
Sbjct: 365 GNLSGKRVDFSGRTVIGPDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECVRNGPT 424
Query: 308 ------CLTYSDGSSSY--SLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKH 357
+ DG Y +L+ G + LR G VV R I DGD V NR P+ HK
Sbjct: 425 VWPGANAVVKQDGDGEYKMNLKFGDRNDVAYRLRYGDVVERHIEDGDIVLFNRQPSLHKL 484
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ + V V T ++N C P +ADFDGD ++L PQ+ A+ E + L V+ L +
Sbjct: 485 SIMSHFVKVRPWRTFRLNECACTPYNADFDGDEMNLHVPQTEEARTEAMTLMGVKYNLAT 544
Query: 418 SHNGNLNLQLATDALLSLKVM-FKKYFLD-KAFT---QQLAMFALS--PLPRPALSKARC 470
NG + D + + ++ K F D K FT Q + M LP PA+ K R
Sbjct: 545 PKNGEPIIAATQDFITAAYLISLKDVFYDRKTFTYVCQHMLMDGKDYLDLPPPAILKPR- 603
Query: 471 SARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVLKG 505
A WT Q+ +L P +S C D +I+ SEV+ G
Sbjct: 604 -ALWTGKQVFSMMLRPNKESPVKINLDAKCREYKPRPGECPDMCPNDGWLVIRNSEVMCG 662
Query: 506 DFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF----- 559
D+ + + I I + GP+ + L L L GFS+ + D
Sbjct: 663 KMDKSIVGGGKKDSIFYVILRDFGPDHAVIVMSRLAKLCARTLGNRGFSIGVGDVFPTME 722
Query: 560 --SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--IENHI----RHVKMLVAKFIL 611
+ + + N ++ L + DL+ +EN I V+ L +
Sbjct: 723 LRAEKEVLVANANRQCDELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQLAGAKCV 782
Query: 612 K--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
+ S L+ +KS S S+ V Q +G Q+ G+ + HF +
Sbjct: 783 ETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIG-GQRVPDGFQDRSLPHFHK---- 837
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+ P +K G + F+ GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 838 NSRQPPSK-GFVANSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 896
Query: 728 VICYDGTVRNVCSNSIIQFDYAVN 751
YD TVR I+QF + +
Sbjct: 897 STQYDDTVR-TSGGGIVQFQFGAD 919
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 186/731 (25%), Positives = 308/731 (42%), Gaps = 117/731 (16%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVS 165
A R+LS +LKRI + + L F + D ILE LP+PP + + D S
Sbjct: 208 ADRVLS-------VLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATS 260
Query: 166 TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGT 219
DL+ + + + R ++G P + LQ + Y + R T
Sbjct: 261 RSEDDLTHQLAMIIRHNENLKRQEKNGAPRHIISRF-TQLLQFHIATYFDNELPGQPRAT 319
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
KS R + + S KA ++R + K FS+R+VIT D ++E+GVP+
Sbjct: 320 QKSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 372
Query: 280 EIAQRITFEERVNVHNINYLQELVD--------------------NKLCLTYSDGSS--- 316
IA +T+ E V +NI L+ELVD +L L Y SS
Sbjct: 373 SIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQH 432
Query: 317 ----------SYSLREGSKGH-----TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 361
SYS+ K F+ V R + DGD V NR P+ HK S+
Sbjct: 433 LELGYRYVLLSYSIHSTHKRLFLEVVIFMLSWSQVERHLQDGDFVLFNRQPSLHKMSIMG 492
Query: 362 LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 421
+ + T ++N + P +ADFDGD +++ PQS +AEVLEL V K ++S
Sbjct: 493 HRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 552
Query: 422 NLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTAL 477
+ + D LL + + K+ F++K M+ +P PA+ K R WT
Sbjct: 553 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPR--PLWTGK 610
Query: 478 QILQSVLP----------------PGFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIV 520
Q+ ++P GF + GD + I++ E+L G + T+ + +V
Sbjct: 611 QVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLV 670
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
I+ E GP+ +F Q L+ L +GF++ + D + + I + I + +
Sbjct: 671 HVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAV 730
Query: 581 YHRMST-QNELVDLQ--------IENHIRHV--------KMLVAKFILKSSTLGYLIDSK 623
+ Q + +D + EN + V K + +++ L ++ +
Sbjct: 731 KDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAG 790
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
S + + Q +G Q + GK F +TL HF + +Y G
Sbjct: 791 SKGSFINISQMTACVGQQ-NVEGKRIPFGFDGRTL-----PHFTKD-----DYGPESRGF 839
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDGTVRN
Sbjct: 840 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 899
Query: 739 CSNSIIQFDYA 749
+ +IQF Y
Sbjct: 900 LGD-VIQFLYG 909
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLG--LPLEFG------KCESCGTSEPGKC 68
++FG+ + EI S+ S ++ P +G G KCE+C + +C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETC-MANMAEC 76
Query: 69 EGHFGYIELPIPIYH 83
GHFGY+EL P+YH
Sbjct: 77 PGHFGYLELAKPMYH 91
>gi|448725404|ref|ZP_21707862.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
gi|445798521|gb|EMA48924.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
Length = 985
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 166/654 (25%), Positives = 280/654 (42%), Gaps = 67/654 (10%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
+L LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 280 VLTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 338
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 339 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 390
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSS 316
FS+R+VI+ D +NE+GVP +A+ +T VN NI ++ V N + + +
Sbjct: 391 NFSARTVISPDPTLSLNEVGVPERVAREMTQTMNVNEQNIEEARQYVRNG---SEAHPGA 447
Query: 317 SYSLREGSKGHTFL-----------RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ +R K L PG V R + DGD V NR P+ H+ S+ A V
Sbjct: 448 NRVIRPDGKVMKILDQAKEELAERIEPGWQVQRHLSDGDIVIFNRQPSLHRMSIMAHEVV 507
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 508 VMPYKTFRLNTTVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENII 567
Query: 426 QLATDALLSLKVMFKK--------YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTAL 477
D + ++ F + L + LP P + WT
Sbjct: 568 GAIQDHVSGTYLLTHDDPEMGGLPRFNETQALDLLRATGVDTLPEPDDDDEQGRPYWTGR 627
Query: 478 QILQSVLPPGFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
I +LP D S GD +I + +++G D D + + EIV +I + G
Sbjct: 628 TIFSELLPSALDLEFTSSTGDTVMIDEGALVEGTIDEDAVGAFGGEIVDTIVKQYGETRA 687
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST--QNEL 590
F + + L M + GFS+ ++D S+S AA I + + Y + + T ++L
Sbjct: 688 RVFINEVASLAMRAIMHFGFSIGIDDESISDAAEAQIDESMDNAYERVQELIDTYENDDL 747
Query: 591 VDLQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVV--------------QQA 635
L ++M + + + K+ + G + D D V+ Q A
Sbjct: 748 ESLPGRTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMA 807
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
+G Q RG+ ++ SHF+ P DL+ +G ++ + GL P E H
Sbjct: 808 ACVGQQAV-RGERINRGYEGRTLSHFK---PGDLS--AEAHGFVEDSYRSGLTPREFFFH 861
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE +V ++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 862 AMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDNIVQFEFG 914
>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
ME]
gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
ME]
Length = 886
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 182/704 (25%), Positives = 300/704 (42%), Gaps = 90/704 (12%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMS 168
S +V+E+L++IP+E L G P+ + +L LPVPP + P I+ S
Sbjct: 176 SPADVREILEKIPDEDCILL---GLNPKVARPEWMVLTVLPVPPVTVR-PSITLETGERS 231
Query: 169 SD-LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRD 225
D L+ +++ V ++ SG PN ++V S LQ + Y E+ G + +
Sbjct: 232 EDDLTHKLVEIVRTNNRLMEHIESGAPNLVVEDVWSL-LQYHIDTYFDNELPGISPAKHR 290
Query: 226 VDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEI 281
S P T L+ + R K FSSR+VI+ D +NE+GVP +
Sbjct: 291 -------SGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVV 343
Query: 282 AQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLRE--GSKG--HTF-------- 329
A+ +T E+V +NI ++EL+ N + Y +R+ G G H +
Sbjct: 344 AKELTVPEKVTKYNIEKIKELIKNG---PNKHPGAKYIIRQIVGRDGMVHEYRIKLDENN 400
Query: 330 -------LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
++ G +V R +MDGD V NR P+ H+ S+ V V T + N +C P
Sbjct: 401 KDFWVENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMGHKVRVLPYRTFRHNLCVCPPY 460
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKY 442
+ADFDGD ++L PQ+ A+AE L VEK +LS G + D + ++ Y
Sbjct: 461 NADFDGDEMNLHAPQTEEARAEAETLMLVEKHILSPRFGGPIIGAIHDFISGAYILTSNY 520
Query: 443 FLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGF------------DS 490
F T L + ++ +I LP G DS
Sbjct: 521 FTKDEATLILRSGGIKDELWEPDKVENGIPLYSGKKIFSKALPKGLNLRYKANICRKCDS 580
Query: 491 CG------DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
C D Y +IK E++KG D+ + I+ +I E GPE +F DS +
Sbjct: 581 CKKENCEYDAYVIIKDGELVKGVIDKKGYGAESGLILHTIVKEFGPEAGRKFLDSSTKMA 640
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQI-------- 595
+ L GF+ ++D L + AL I+K + + + Q E +L++
Sbjct: 641 IRTLMLRGFTTGIDDEDLPEEALREIEKVLDEAERKV-DEIIEQYEKGELELLPGMSPEE 699
Query: 596 --ENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
E HI V + +++ + + + + + + Q A +G Q S R
Sbjct: 700 SREAHIMRVLREARDKAGEIAERYLGLDNHAVIMAITGARGKILNITQMAACIG-QQSVR 758
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
GK + + + HFE+ DL +G ++ + GL P E H+I RE +V
Sbjct: 759 GKRIFRGYKDRVLPHFEK---GDLG--ARAHGFVRSSYKKGLSPTEFFFHAIGGREGLVD 813
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ G + + L+ L+D+ +D TVR+ ++QF Y
Sbjct: 814 QAVRTAQSGYMQRRLINALQDLKSEFDFTVRD-SRGIVVQFRYG 856
>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon
diffractellum]
Length = 999
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 162/648 (25%), Positives = 285/648 (43%), Gaps = 108/648 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + Q +++
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR--EQVMSI 468
Query: 455 FALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCG 492
P +P+PA+ K R RWT Q++ VLPP F G
Sbjct: 469 MLWVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAG 526
Query: 493 DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADG 551
D L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +G
Sbjct: 527 DSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNG 586
Query: 552 FSVSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHR 583
FS+ + D + I+ E+ + S +
Sbjct: 587 FSIGIGDTVPDIGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAA 646
Query: 584 MSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ 641
++ + EN ++ + + +A+ K ST+ S ++ +V Q G +
Sbjct: 647 LNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKR 699
Query: 642 LSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
+ F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 700 IP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGRE 747
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|157741498|gb|ABV69454.1| RNA polymerase II largest subunit, partial [Endocarpon psorodeum]
Length = 999
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 163/639 (25%), Positives = 280/639 (43%), Gaps = 90/639 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISKLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWFLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ-----------------IE 596
+ + D + I+ E+ + + R++ DL+
Sbjct: 589 IGIGDTVPDIGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFESKVSAAL 647
Query: 597 NHIRHVKMLVAKFILKSSTLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGK-----FYS 650
N R + LK S + + S + + Q +G Q S GK F
Sbjct: 648 NGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFKY 706
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + +Y A G ++ + GL P E H+++ RE ++ ++
Sbjct: 707 RTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 756
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 757 AETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|322702047|gb|EFY93795.1| DNA-directed RNA polymerase III [Metarhizium acridum CQMa 102]
Length = 1447
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 176/703 (25%), Positives = 298/703 (42%), Gaps = 96/703 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ P ++ ++ DL+ + V I + +
Sbjct: 250 GLDPAEGRPEMFIWQFVPAPPVCIR-PSVAQDNASNEDDLTTKLADIVWVSGMIRSALQK 308
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G+P ++ + LQ + Y L+ G KS+R R Q
Sbjct: 309 GSP-IQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKSTRGFCQRLKGKQG--------- 358
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D ++++ VP +A+ +T+ E+VN NI L++ V
Sbjct: 359 -RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVR 417
Query: 305 NK---------LCLTYSDGSSSYSLREGSK--GHTFLRPGQVVHRRIMDGDTVFINRPPT 353
N + D ++LR G++ L G +V R + DGD V NR P+
Sbjct: 418 NGCDVWPGAQGILKKEDDSYYKFNLRFGNRDLAAKQLSYGDIVERHLEDGDVVLFNRQPS 477
Query: 354 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK 413
HK S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 478 LHKLSIMSHLAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKY 537
Query: 414 QLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS-----PLPRPALSK 467
L + NG + D + + ++ K F D+ + M + +P PA+
Sbjct: 538 NLATPKNGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQGTKIEIPPPAIVA 597
Query: 468 ARCSARWTALQILQSVLPPGFD-------------------SCGDR------YLIKKSEV 502
+ A WT QI ++ P D C D +++ SEV
Sbjct: 598 PK--ALWTGKQIFSIMMRPNKDCSVKINLDAKCRAYKARPGQCPDMDPNDGWLVVRNSEV 655
Query: 503 LKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
+ G D+ T+ S + I I + GP+E + + L L L GFS+ + D
Sbjct: 656 MCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSIGVGDVFP 715
Query: 562 SKAALWNIQKE--IQALYSLLYHRMST--QNEL-------VDLQIENHI----RHVKMLV 606
++ N++KE + Y + + T Q +L ++ +EN I V+
Sbjct: 716 TET--LNVEKENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQA 773
Query: 607 AKFILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+ + S LI ++S S S V Q +G Q+ G+ + HF
Sbjct: 774 GSYCIDTLSRNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIG-GQRVPDGFQDRSLPHFH 832
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ + P +K G +K F+ GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 833 K----NARQPPSK-GFVKNSFYTGLFPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 887
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + EPV
Sbjct: 888 SLEDLSTQYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAEPV 929
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P LG + GKC++C S
Sbjct: 23 GIKFGIQSNQDIANQAVLEVSDRLLYDIENNRAPYRHGPLDPRLGTSSKSGKCDTCHDSL 82
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRI 124
C GHFG++ LP+P + HI L+ M Q K+ G R+L E + LK +
Sbjct: 83 Q-NCIGHFGHVRLPLPAF---HIGYLRFIMSILQEICKDCG---RVLLEEPERRSFLKEL 135
>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
Length = 1390
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 213/804 (26%), Positives = 333/804 (41%), Gaps = 124/804 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
M +F + I+++ + + LL+ E V M KRIP+E L AGK P D
Sbjct: 194 MQSFDIAIEHNKMVEPLLTRAQENLNPLVVLNMFKRIPQEDIPLLLMNPEAGK---PAD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +T+ ERVN N+ +++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K LR G VV R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQNRHTQMKRFLKYGNRE--KIAQELRFGDVVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 IAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL--------SPLPRPALSKARCSAR 473
+ D L ++ K F D++ Q+ L LPRPA+ K A
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKIRVTLPRPAIMKP--MAL 594
Query: 474 WTALQILQSVLPP-------------GFDSCG--------DRY-LIKKSEVLKGDFDRDT 511
WT QI +L P G CG D + +I SE++ G D+ T
Sbjct: 595 WTGKQIFSVILKPSKECPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSLDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL---- 566
+ S N I + + G E L L L GFS+ + D + + L
Sbjct: 655 LGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKH 714
Query: 567 -------WNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
+ I+AL + L T E ++ I + ++ L+
Sbjct: 715 DLLDDGYKKCDEYIEALKTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + + EP+ Y + + S
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPADMEGKDEPLEFKRVLDNIRAVYTCPYEPALS 941
Query: 788 SN----NSWELMK--EILLCRVSF 805
N + +MK + L CR SF
Sbjct: 942 QNELVLTADAIMKRADFLCCRDSF 965
>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
taurus]
Length = 1390
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 221/843 (26%), Positives = 347/843 (41%), Gaps = 147/843 (17%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVR+ + IIQF Y + ++ EP+ +K VLD+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL-----------EFKRVLDN--- 927
Query: 788 SNNSWELMKEILLCR----VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRV 843
+K + CR +S N + I+ N+ C CQ+ +K +K V
Sbjct: 928 -------IKAVFPCRSEPALSKNELLLSAESIMKKNEFLC----CQDSFLQEIKKFIKEV 976
Query: 844 SLK 846
S K
Sbjct: 977 SEK 979
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 178/672 (26%), Positives = 290/672 (43%), Gaps = 91/672 (13%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRS-SRSGTPNFESQEVE 202
IL LPVPP + P + G++ + D L ++K I+ S+SG+P ++
Sbjct: 214 ILTCLPVPPPHVR-PSVMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLDDM- 271
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
LQ Y+ E+ G S+ + R S K ++R + K FS+
Sbjct: 272 IKILQYHCATYMNNEISGVPMSTTK-NGRMLKSL--RQRLKGKEGRVRGNLMGKRVDFSA 328
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSL 320
R+VIT D ++++GVP IA+ +T E+V N + ELV N TY + Y L
Sbjct: 329 RTVITPDPTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNG-PETYP--GAKYVL 385
Query: 321 REG------------SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
R+ S L+ G + R + DGD V NR P+ HK S+ V V
Sbjct: 386 RDDGTRIDLKFLSDRSTDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMP 445
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL K E+LEL V K +++ + + L
Sbjct: 446 YSTFRLNLSVVTPYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALV 505
Query: 429 TDALLS-LKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D LL+ K + +++K M+ LP PA+ K + WT Q+ +L
Sbjct: 506 QDTLLAGSKCTRRDVYIEKDVMMNCLMYLQDFNGQLPVPAILKPK--PLWTGKQLFSLLL 563
Query: 485 P-------------------------PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEI 519
P P FD+ +I E+L G D+ ++ S +
Sbjct: 564 PSIDYYGISSTHDDEVGDLKHLDDHLPEFDTG---IIISNGELLTGILDKKSLGSSHGSL 620
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-------FSLSKAALWNIQKE 572
+ I +KG +E +F Q +L L GFSV + D + + N ++E
Sbjct: 621 IHIIVNDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDTIADGETVKKIEEIINNAERE 680
Query: 573 IQALYSLLYHRMSTQ--NELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDS 622
++ + ++ + T V+ E I M V K + S+++ ++ S
Sbjct: 681 VKKIVKQAHNGLVTAEPGRTVEQSFERSINSTLNAAREDAGMHVKKSLKDSNSIKSMVTS 740
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYG 677
S + + Q +G Q + GK F ++TL HF D + P ++ G
Sbjct: 741 GSKGSYLNISQIIACVG-QQNVEGKRVPFGFKNRTL-----PHFS----TDDHGPESR-G 789
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
+ + GL P E H++ RE ++ ++ +E G + + L+ + DV + YDGTVR+
Sbjct: 790 FVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRD 849
Query: 738 VCSNSIIQFDYA 749
N IIQF Y
Sbjct: 850 ASGN-IIQFLYG 860
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 176/710 (24%), Positives = 298/710 (41%), Gaps = 94/710 (13%)
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGV 164
V ++ S V +LKRI +E + L Y D IL+ LP+PP + + D
Sbjct: 224 VERKQTLSAERVLGVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTS 283
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------VRG 218
S DL+ + + + R R+G+P E + LQ + Y + R
Sbjct: 284 SRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEF-AQLLQFHIATYFDNELPGLPRA 342
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
T +S R + + S KA ++R + K FS+R+VIT D ++++GVP
Sbjct: 343 TQRSGRPIKSIC-------SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 395
Query: 279 FEIAQRITFEERVNVHNINYLQELVD--------------------NKLCLTYSDGSSSY 318
+ IA +T+ E V +NI L+ELV+ +L L Y SS +
Sbjct: 396 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 455
Query: 319 SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 378
L G K V R + DGD V NR P+ HK S+ + + T ++N +
Sbjct: 456 HLELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 505
Query: 379 CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM 438
P +ADFDGD +++ PQS +AEVLEL V K ++S + + D+LL + +
Sbjct: 506 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKI 565
Query: 439 FKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP-------- 486
K+ F+ K + M+ +P P + K WT Q+ ++P
Sbjct: 566 TKRDTFISKDVFMNILMWWEDFDGKVPAPTILKP--EPLWTGKQVFNLIIPKQINLIRYS 623
Query: 487 --------GFDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFD 537
G + GD + I+K E+L G + T+ + ++ I+ E GP+ +F
Sbjct: 624 SWHNENERGPITPGDTMVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLG 683
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE-------- 589
Q L+ L FS+ + D + + I + I + + E
Sbjct: 684 HTQWLVNYWLLQQAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPG 743
Query: 590 --LVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
++D EN + K + +S+ L ++ + S + + Q +G
Sbjct: 744 RTMMD-SFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 802
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q + GK ++ HF + +Y G ++ + GL P E H++
Sbjct: 803 QQ-NVEGKRIPFGFIDRTLPHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGG 856
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ SE G + + L+ + D+++ YDGTVRN + +IQF Y
Sbjct: 857 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 905
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 17 IRFGLATQKEICTASI----SDCSISHASQ----------LANPFLGLPLEFGKCESCGT 62
++FG+ + EI SI + I H L++P LG KCE+C T
Sbjct: 18 VQFGILSPDEIVIFSILRQMAVVQIEHGETTERGKPKIGGLSDPRLGTIDRKMKCETC-T 76
Query: 63 SEPGKCEGHFGYIELPIPIYH 83
+ +C GHFGY+EL P++H
Sbjct: 77 ASMAECPGHFGYLELAKPMFH 97
>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
Length = 880
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 224/887 (25%), Positives = 369/887 (41%), Gaps = 164/887 (18%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I G++FG+ + EI S++ S + +P LG+ KC CG
Sbjct: 3 EKIIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCG 62
Query: 62 TSEPGKCEGHFGYIELPIP---IYHPSHISEL---------------------------- 90
+ G C GHFG+IEL P I + HI +
Sbjct: 63 NTLAG-CPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAI 121
Query: 91 ---------KLTMYAFQLQIKN-------------------------DGVAQRLLSSCCE 116
+L Y ++ IKN +G +L S E
Sbjct: 122 KLRWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKL--SPSE 179
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLS 172
+++ L+RIP+ + L GY P+ IL LPVPP + P I+ + D
Sbjct: 180 IRDRLERIPDSDVELL---GYDPKSSRPEWMILTVLPVPPITIR-PSITIESGIRAEDDL 235
Query: 173 IAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ E ++ S +G P +++ + LQ V Y E+ G +
Sbjct: 236 THKLVDIIRLNERLKESIEAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPAKHR---- 290
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FS+R+VI+ D ++E+G+P+ IA+ +
Sbjct: 291 ---SGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIARML 347
Query: 286 TFEERVNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVV 336
T ERV NI +++ + N + DG +++ + + + G VV
Sbjct: 348 TVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAGYVV 407
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++DGD V NR P+ H+ S+ A V V T ++N L C P +ADFDGD ++L P
Sbjct: 408 ERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNLHVP 467
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD-----ALLSLKVMFKKYFLDKAFTQQ 451
QS A AE EL V K +++ G + D LLS+K +++ T
Sbjct: 468 QSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTL--LTVEEVATIL 525
Query: 452 LAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDF-DRD 510
+ L PA+ + +T Q++ LP F+ G + K K + D
Sbjct: 526 GVTDFVGELGEPAILAPK--PYYTGKQVISLFLPKDFNFHGPANISKGPRACKDEICPHD 583
Query: 511 TIPSVINEIVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DG 551
+ + N ++ F+K PE +L E+ LM+N+F G
Sbjct: 584 SFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRG 643
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL-------VDLQIENHI--- 599
F+++LED ++ A I +I+ YS + Y R + +L ++ +E++I
Sbjct: 644 FTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDT 703
Query: 600 ----RHVKMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
R V +A K++ + + + + + + + Q LG Q S RG+ +
Sbjct: 704 LDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALLG-QQSVRGERIRRGYR 762
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
E S F+ D+ P A+ G +K F GL PYE H+ RE +V ++ S+ G
Sbjct: 763 ERTLSLFKY---GDIA-PEAR-GFVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSG 817
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA 761
+ + L+ L D+ I YDGTVR++ + I+Q Y +A H ++ A
Sbjct: 818 YMQRRLINALSDLRIEYDGTVRSLYGD-IVQVVYGDDA--VHPMYSA 861
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 177/727 (24%), Positives = 306/727 (42%), Gaps = 80/727 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
Y P I L +YA + D +++L S V E+ KRI +E L F +
Sbjct: 185 YQP-RIKRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKFARP 243
Query: 142 GY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
+ I+ LPVPP + + G + DL+ + V ++ R+ +SG +
Sbjct: 244 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGA----AAH 299
Query: 201 VESND---LQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLF 251
V + D LQ V ++ R KS R + + + Q K ++R
Sbjct: 300 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQ----RLKGKEGRVRGNL 352
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC--- 308
+ K FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV
Sbjct: 353 MGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYP 412
Query: 309 ---LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
D LR K L+ G V R + DGD V NR PT HK S+ V
Sbjct: 413 GAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRV 472
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
+ T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ +
Sbjct: 473 RILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 532
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L +++ K+ FL++ L MF + +P+PA+ K R WT QI
Sbjct: 533 MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPR--PLWTGKQIF 590
Query: 481 QSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
++P + S GD + +++ E++ G + ++ + +
Sbjct: 591 SLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSL 650
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL 579
V + E G + F+ ++Q ++ L +G S+ + D +IQ I+
Sbjct: 651 VHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQD 710
Query: 580 LYHRM--STQNEL-------VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDS 622
+ + + NEL + EN + + K + + + ++ +
Sbjct: 711 VIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVA 770
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q +G Q + GK HF + +Y G ++
Sbjct: 771 GSKGSKINISQVIAVVG-QQNVEGKRIPFGFKHRTLPHF-----IKDDYGPESRGFVENS 824
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN N
Sbjct: 825 YLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI-NQ 883
Query: 743 IIQFDYA 749
++Q Y
Sbjct: 884 VVQLRYG 890
Score = 45.1 bits (105), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H IS++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFISKI 101
>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
Length = 1465
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 172/685 (25%), Positives = 287/685 (41%), Gaps = 90/685 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ +G ST DL+ A L +++ +IR++ +
Sbjct: 252 GLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGAST-EDDLT-AKLAEIVYISGLIRTALN 309
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + LQL + Y L G KS R R Q
Sbjct: 310 KGKPMQTIMEQWEYLQLQIAMYVNSDVPGLNQPGFGKSIRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D +N++ VP +A+ +TF ERV HN+ L++ +
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQSHNMEKLRQCIL 419
Query: 305 NKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTH 355
N + +G+ L+ G + LR G VV R + DGD V NR P+ H
Sbjct: 420 NGPKVWPGANHVIKDNGNWKQDLQFGDRALVARDLRIGDVVERHLEDGDVVLFNRQPSLH 479
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +CGP +ADFDGD ++L PQS A+AE + L V+ L
Sbjct: 480 KLSIMSHLAKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAITLMGVKNNL 539
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAF----TQQLAMFALSPLPRPALSKAR 469
+ NG + D + + ++ K ++ KAF T + LP P++ K
Sbjct: 540 ATPKNGEPIIAATQDFITASYLLSSKDRFYNRKAFTYICTHMVDGVTHIDLPPPSIIKP- 598
Query: 470 CSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVLK 504
A WT QI ++ P S C D +I+ SEV+
Sbjct: 599 -EALWTGKQIFNVLMRPNKQSPVLVNLDARCREYSARPGQCPDMDPNDAWLVIRNSEVMC 657
Query: 505 GDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G D+ I S N + I + GP+ + + L L L GFS+ + D S
Sbjct: 658 GRMDKSIIGSGKKNSVFYIILRDFGPDHAVYAMNRLTKLCARQLGNQGFSLGVGDVFPST 717
Query: 564 AALWNIQKEIQALYSLLYHRMST-------------QNELVDLQIENHIRHVKMLVAK-- 608
+ + +Q Y + T + +++ I + V+ +
Sbjct: 718 ELTKSRDRLVQDAYDKSDALIETFKQGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQC 777
Query: 609 --FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ +++ + +S S V Q +G Q+ G+ + HF +
Sbjct: 778 VDALSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIG-GQRVPDGFQDRSLPHFHK--- 833
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ P +K G ++ F+ GL P E H+IS RE ++ ++ +E G + + LM L D
Sbjct: 834 -NARQPASK-GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLED 891
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVN 751
+ YD TVR S +I+QF + +
Sbjct: 892 LSTQYDNTVR-TSSGTIVQFQFGAD 915
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 162/627 (25%), Positives = 276/627 (44%), Gaps = 65/627 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E ES LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANANVQRCEQEGAPAHVVNEFESL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V NI+ L E V N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPFNIHKLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L V Q++S + + + D L ++ M + F+D + +
Sbjct: 306 QSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFW 365
Query: 456 ALS---PLPRPALSKARCSARWTALQILQSVLPPG-----FD-----SC---GDRYLIKK 499
+ +P PA+ K + WT Q++ +P G FD +C Y+I
Sbjct: 366 IPNWDGVVPTPAILKPK--PLWTGKQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYII-D 422
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
+++ G D+ TI + +V +I EKG FF ++Q ++ L GFS+ + D
Sbjct: 423 GQIMWGVVDKKTIGATGGGLVHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGFSIGIGDT 482
Query: 560 SLSKAALWNIQKEIQ----------------ALYSLLYHRMSTQNELVDLQIENHIRHVK 603
A + ++ + I+ L + M E ++ N R
Sbjct: 483 IADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGMTMRESFEHNVSRVLNQARDTA 542
Query: 604 MLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
A+ LK + + ++ + S + + Q + +G Q+ + GK + HF
Sbjct: 543 GRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQMVE-GKRVPFGFADRTLPHFC 601
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 602 KD-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGTVRN + +IQF Y
Sbjct: 657 ALEDVMVQYDGTVRNSLGD-VIQFVYG 682
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 152/549 (27%), Positives = 245/549 (44%), Gaps = 59/549 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +T+ E V +NI L + V N
Sbjct: 349 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQN 408
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDGS + G L G V R ++DGD + NR P+ HK S
Sbjct: 409 GPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKES 468
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 469 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + ++ +P PA+ K R RW
Sbjct: 529 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPR--PRW 586
Query: 475 TALQILQSVLPP-----------GFDSCGDR-YLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T QI+ V+P G D+ LI++ EV+ G + + + IV
Sbjct: 587 TGKQIISMVVPKIINLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHL 646
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
+ E GP ++F + Q ++ L +G S+ + D A + +Q I + +
Sbjct: 647 CYNELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQ 706
Query: 583 --RMSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------SKS 624
M+T N+L L EN + + A+ ++T L D S S
Sbjct: 707 LTDMATNNQLEPLPGMNIRETFENKVSKA-LNTARDKAGTTTESSLKDINNAVTMALSGS 765
Query: 625 DSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
+ + Q +G Q+ + + F +TL HF + D P A+ G ++
Sbjct: 766 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHFTK----DDYSPEAR-GFVE 815
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H+++ RE ++ ++ +E G + + L+ L D YDGTVRN
Sbjct: 816 NSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLG 875
Query: 741 NSIIQFDYA 749
+ IIQF Y
Sbjct: 876 D-IIQFVYG 883
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + +EI S++ + L +P LG KC++CG +
Sbjct: 19 IQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTCGENM-S 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I +K
Sbjct: 78 ECPGHFGHIELARPVYHPGFIKRVK 102
>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 178/691 (25%), Positives = 303/691 (43%), Gaps = 97/691 (14%)
Query: 133 AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSG 192
A +G P+ YI YLP PP C+ P + + D+++ L +++ +I++
Sbjct: 176 ASRGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQSNEDDITVK-LTEIVWTSSLIKAGIEK 232
Query: 193 TPNFESQEVESNDLQLAVGQYLE-----------VRGTAKSSRDVDARFGVSQDPNSTTK 241
+ + + + LQL+V Y+ + G AKS++ + G Q K
Sbjct: 233 GISINNLMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIR---GFCQ----RLK 285
Query: 242 AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQE 301
+ R K FS+R+VI+ D R++E+ VP +A+ +T+ E+ +N LQ+
Sbjct: 286 GKQGRFRGNLSGKRVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQ 345
Query: 302 LVDNKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPP 352
L+ N + + ++ +LR G K L G VV R I DGD V NR P
Sbjct: 346 LILNGPDVHPGANYVMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQP 405
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 406 SLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVK 465
Query: 413 KQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALS 466
LL+ +G + D + S + K F D+A F Q L+M + + L P P +
Sbjct: 466 NNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSMMSDADLQFDLPPPTIF 525
Query: 467 KARCSARWTALQILQSVLPPGFDSC-------------------------GDRY-LIKKS 500
K WT Q+ ++ P +S D Y +I+ S
Sbjct: 526 KP--VMLWTGKQVFSLLMKPNKNSNVIVNLDAKNKAFTPPAPGYPNEMSPNDGYVIIRGS 583
Query: 501 EVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
+VL G D+ T+ + + +I + GP+ E + + L L GFS+ + D
Sbjct: 584 QVLSGVMDKSTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDV 643
Query: 560 SLSKAALWNIQKEIQALYSL------LYHR--MSTQ-----NELVDLQIENHIRHVKMLV 606
+ + ++ Y LY+R + TQ + ++ +I + V+ V
Sbjct: 644 TPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQV 703
Query: 607 AKFI---LKSSTLGYLIDS-KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
+ L S+ ++ + S + V Q +G Q+ + F ++L
Sbjct: 704 GEVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL----- 758
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + +
Sbjct: 759 PHFTK----NSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSR 813
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
LM L D+ YD TVRN SN I+QF Y
Sbjct: 814 RLMKSLEDLSAQYDNTVRN-SSNGIVQFTYG 843
>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
boliviensis boliviensis]
Length = 1390
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 174/723 (24%), Positives = 308/723 (42%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L +YA + D +++L S V E+ KRI +E L Y
Sbjct: 184 YQP-RIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARP 242
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
+ I+ LPVPP + + G + DL+ + V ++ R+ +SG + ++
Sbjct: 243 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAE 302
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
+V+ +A E+ G ++ + S P + K L+ ++R + K
Sbjct: 303 DVKLLQFHVATMVDNELPGLPRAMQK-------SGRPLKSIKQRLKGKEGRVRGNLMGKR 355
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV
Sbjct: 356 VDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKY 415
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD + NR PT HK S+ V +
Sbjct: 416 IIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILP 475
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ + + +
Sbjct: 476 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 535
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVL 484
D L +++ K+ FL++ L MF + +P+PA+ K R WT QI ++
Sbjct: 536 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIFSLII 593
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + ++ + +V
Sbjct: 594 PGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHIS 653
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
+ E G + F+ ++Q ++ L +G S+ + D KA +IQ I+ +
Sbjct: 654 YLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEV 713
Query: 584 M--STQNEL-------VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
+ + NEL + EN + + K + + + ++ + S
Sbjct: 714 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 773
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK HF + +Y G ++ + G
Sbjct: 774 SKINISQVIAVVG-QQNVEGKRIPFGFKHRTLPHF-----IKDDYGPESRGFVENSYLAG 827
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YD TVRN N ++Q
Sbjct: 828 LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQL 886
Query: 747 DYA 749
Y
Sbjct: 887 RYG 889
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNM-T 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H I+++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFITKI 101
>gi|257051867|ref|YP_003129700.1| DNA-directed RNA polymerase subunit A' [Halorhabdus utahensis DSM
12940]
gi|256690630|gb|ACV10967.1| DNA-directed RNA polymerase subunit A' [Halorhabdus utahensis DSM
12940]
Length = 1013
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 171/680 (25%), Positives = 298/680 (43%), Gaps = 67/680 (9%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDIS-DGVSTMSS 169
++++ + IP++ L G P+ IL LPVPP + P I+ D
Sbjct: 292 SDIRDWFEEIPDD---DLEAIGVNPETSRPEWMILTVLPVPP-VTARPSITLDNGQRSED 347
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ ++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 348 DLTHKLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH--- 403
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ F SG FS+R+VI+ D +NE+GVP +A
Sbjct: 404 ----RSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAS 459
Query: 284 RITFEERVNVHNINYLQELVDN----KLCLTYSDGSSSYSLREGSKGHTFL----RPGQV 335
+T VN N+ ++ V N Y L+ K L PG
Sbjct: 460 EMTQTMNVNERNLAEARQYVSNGPEAHPGANYVRRPDGRRLKVTEKNCEELAEKVEPGWE 519
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R ++DGD V NR P+ H+ S+ A V V T ++N ++C P +ADFDGD +++
Sbjct: 520 VARHLLDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHA 579
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLA 453
Q+ A+AE L V++Q+LS G + D + S+ ++ + +F + L
Sbjct: 580 LQNEEARAEARVLMRVQEQMLSPRFGENIIGAIQDHITSVYLLTHQNPHFNETQALDLLR 639
Query: 454 MFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKKSEVLKGDFD 508
+ LP P + A WT I +LP D GD +I+ ++L+G D
Sbjct: 640 ATNVDELPEPD-GEEDGRAYWTGRSIFSELLPDDLDLEFTSEAGDDVVIEDGQLLEGTID 698
Query: 509 RDTIPSVINEIVTSI--FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL 566
+ + EIV +I ++K + F + + L + + GFS+ ++D S+ AA
Sbjct: 699 DSAVGAFGGEIVDTIAKVYDKTRARI--FINEVSTLAVRTIMHFGFSIGIDDESIPPAAQ 756
Query: 567 WNIQKEIQALYSLLYHRMST--QNEL-------VDLQIENHIRHV--------KMLVAKF 609
+++ I + Y + + T Q +L VD +E I +
Sbjct: 757 EQVEEAIGSAYDRVQELIETYEQGDLESLPGRTVDETLEMKIMQTLGQARDSAGDIAEDH 816
Query: 610 ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
+ + + DS + ++ + Q AG +G Q RG+ ++ + SHFE DL
Sbjct: 817 FAEDNPAVVMADSGARGSMLNLTQMAGCVGQQAV-RGERINRGYEDRTLSHFEE---NDL 872
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+ +G ++ + GL P E H++ RE +V ++ S+ G L + L+ L ++
Sbjct: 873 S--AEAHGFVEHSYREGLGPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELET 930
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YDGTVR+ S++++QF++
Sbjct: 931 QYDGTVRD-TSDTVVQFEFG 949
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 178/699 (25%), Positives = 308/699 (44%), Gaps = 63/699 (9%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPV-PPNCLSVP 158
I G +++LS+ E+L+ I ++ K L F + ++L LPV PP+
Sbjct: 129 IPGTGDRKQILSAH-RAYEVLRNISDKDAKMLGLDPKFARPEWLLITVLPVAPPHVRPSI 187
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRG 218
+SD + DL+ ++ V + R+G N + E LQ V +
Sbjct: 188 QLSDSNARSEDDLTHQLVNIVKANKTLESLCRAGEANHVVSQFEEL-LQYKVNALFDNEA 246
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
AK R G P T + L+ ++R + K FS+R+VIT D +++
Sbjct: 247 NAKDGVQERQRGG---KPLKTIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQ 303
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGH 327
+GVP IA+ +T ERV +N++ L ELV N + ++DG
Sbjct: 304 VGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPGARYVVHADGRRVDLRFVKHLND 363
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L G VV R + D D + NR P+ HK S+ A V V D T ++N + P +ADFD
Sbjct: 364 LALHTGFVVERHLRDDDLIVFNRQPSLHKMSIMAHRVKVLDHSTFRLNLSVTSPYNADFD 423
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDK 446
GD ++L PQ++AAKAE+ +L V + ++S + + + D+LL S ++ K+ F+D+
Sbjct: 424 GDEMNLHVPQNVAAKAELQQLMMVPRNVVSPQSNKPVMGIVQDSLLASARMTSKETFIDQ 483
Query: 447 AFTQQLAMFALSP----LPRPALSKARCSARWTALQILQSVLPP-GFDSCGDRY------ 495
+ M+ +P+PA+ K + WT QI +LP F G R+
Sbjct: 484 DLLFNIVMWVGDDWDGVVPQPAILKPK--PLWTGKQIFSLILPKLNFAGKGARFPKKGGN 541
Query: 496 ---------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
LI+ ++ G D+ ++ + ++ I+ E G + F + +Q +
Sbjct: 542 TLNWSDGEVLIQSGRLVTGVMDKKSLGTSGGSLIHVIWLEMGHVAAMHFLNRVQTTTNQW 601
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQI-ENHIRHVKM 604
L FS+ + D ++ + I+K I +A + Q ++ Q I +
Sbjct: 602 LVNVSFSIGIGDAVADQSTMRTIEKIIDEAKLKVKELVQKGQRGALECQPGRTMIESFEA 661
Query: 605 LVAKFILKSSTLGYLI--DSKSDSAVSKVVQQAGFLG------------LQLSDRGKFYS 650
+V + + + T L +S S++ K + AG G Q + GK
Sbjct: 662 MVNRVLNAARTSAGLSVQESISEANNVKSMAMAGSKGNDINISQIIACVGQQNVEGKRIP 721
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
HF + DL P ++ G ++ + GL P E H++ RE ++ ++
Sbjct: 722 YGFRRRTLPHFAKD---DLG-PESR-GFVENSYLRGLSPQEFYFHAMGGREGLIDTACKT 776
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ G L + L+ + +++ YDGTVRN N ++QF Y
Sbjct: 777 AQTGYLQRRLVKSMESIMVKYDGTVRNNQGN-VVQFLYG 814
>gi|167376643|ref|XP_001733237.1| DNA-directed RNA polymerase II subunit RPB1 [Entamoeba dispar
SAW760]
gi|165904563|gb|EDR29776.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
dispar SAW760]
Length = 1619
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 163/681 (23%), Positives = 299/681 (43%), Gaps = 102/681 (14%)
Query: 136 GYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G+ P D + I +PVPP C+ +S+G DL++ + + V+ E ++
Sbjct: 221 GFDPIDCHPKFMIFTLIPVPPLCVRPSIVSEGAKESKDDLTV-LYENVITANERLKEENQ 279
Query: 192 ---GTPNFESQEVESNDLQLAVG----QYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G + ++ +E + + + E K+ + ++ R Q
Sbjct: 280 KCEGVSEYYNKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQG--------- 330
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VI+ D ++E+GVP +A+ +TF E V HN LQ+LV+
Sbjct: 331 -RLRLNLMGKRVDFSARTVISPDPNLSMDEVGVPTGVARILTFPEVVTQHNKEKLQKLVN 389
Query: 305 NKLCLTYSDGSSSYSLREGSKGHTF--------LRPGQVVHRRIMDGDTVFINRPPTTHK 356
+ +D ++ L E G T+ + G VHR IM+GD V NR P+ H+
Sbjct: 390 AGM----NDYPGAFML-ERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHR 444
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
S+ V V T ++N P +ADFDGD ++L PQ+L A+AEV L Q++
Sbjct: 445 MSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQII 504
Query: 417 S-SHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL--------SPLPRPALSK 467
+ HNG + + + D ++ K+ + F +QL + + +P PA+ K
Sbjct: 505 TPQHNGPV-MGIVQDTQCGSYLITKR----ETFIEQLVFYNILQWLDNFDGTVPIPAILK 559
Query: 468 ARCSARWTALQILQSVLP------------------PGFDSCGDRYLIKKSEVLKGDFDR 509
+WT Q+ +LP P + D Y++ ++ D+
Sbjct: 560 P--VPKWTGKQVFTQILPTINFQRGNWSIKELLKHGPAVND-SDVYILDGVHLVGSLRDK 616
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF----SLSKAA 565
+ I+ +IF +KG E FF+ Q + + GF+V + D S+ +
Sbjct: 617 SEFGKNRSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSI 676
Query: 566 LWNIQKEIQALYSLLYHRM---------STQNELVDLQIENHIRHVKM----LVAKFILK 612
N++K + L H+ +T E ++ ++ N + +K + K + K
Sbjct: 677 RANVEKSKKEAEKFLSHQHDDEIKVQAGNTMFENLESELGNLLEKLKKECDSITTKSLKK 736
Query: 613 SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMD 668
+ L ++DS S + + ++Q F+G Q + + FY +TL H+ +
Sbjct: 737 DNNLLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRTL-----PHYWK----- 786
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H+++ R+ I+ ++ S+ G + + ++ + DV
Sbjct: 787 EDYGFVSRGFVENSYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQ 846
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
YD TVR S +++F Y
Sbjct: 847 CKYDRTVRR-SSGDMVEFMYG 866
>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
Length = 1555
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 183/686 (26%), Positives = 294/686 (42%), Gaps = 89/686 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +Y+P PP C+ P ++ ++ D++ + + +L + S +
Sbjct: 254 GLDPSEGRPEMFLWQYVPAPPICIR-PSVAQENASNEDDITSKLSEIILYAGHLRESLKK 312
Query: 192 GT--PNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM 247
G P Q LQL VG Y+ +V G + R G Q K +
Sbjct: 313 GVALPVIMEQ---WEFLQLQVGMYVNSDVPGLYQPGFGKPIR-GFCQ----RLKGKQGRF 364
Query: 248 RTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-- 305
R K FS R+VI+ D + ++ VP +A+ +T+ ERVN NI L+E V N
Sbjct: 365 RGNLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGP 424
Query: 306 -----KLCLTYSDGSSSYSLREGS-----KGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ DG+ Y+L+ G+ K + L G VV R + D D V NR P+ H
Sbjct: 425 NIWPGAQGIIKKDGAK-YNLKIGTESLRQKHASSLEFGDVVERHLEDNDIVLFNRQPSLH 483
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ L
Sbjct: 484 KLSIMSHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 543
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF-----TQQLAMFALSPLPRPALSKAR 469
++ NG + D + + ++ K F D+ TQ L LP PA+ K R
Sbjct: 544 ITPKNGEPIIAATQDFITAAYLLSSKDRFFDRTSFTYICTQMLLGDTHLELPPPAILKPR 603
Query: 470 CSARWTALQILQSVLPPGFDS-------------------------CGDRYL-IKKSEVL 503
A WT QI ++ P +S D +L ++ SEV+
Sbjct: 604 --ALWTGKQIFNVLMRPNKESPVLVNLDAKNKVYKPKKDGQIPDMDIDDSFLVVRNSEVM 661
Query: 504 KGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF--- 559
G D+ T+ N + I + GP+ + L L L GFS+ + D
Sbjct: 662 CGRMDKSTVGGGKKNSVFYVILRDFGPDHAAAAMNRLAKLCARTLTLRGFSIGVGDVWPS 721
Query: 560 -SLSKAALWNIQKEIQALYSLL--YHRMSTQN-------ELVDLQIENHIRHVKMLVAKF 609
SL+K +++ + L+ Y + + E ++ I + V+ +
Sbjct: 722 TSLTKHKARLVEEAYKKCDDLIETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGDY 781
Query: 610 ILK--SSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+ S+ LI +KS S S V Q +G Q+ GK + HF +
Sbjct: 782 CVNNLSNNNAPLIMAKSGSKGSDINVAQMVACVGQQIIG-GKRVPDGFQDRSLPHFHK-- 838
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 839 --NARQPPSK-GFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 895
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVN 751
D+ YD TVR I+QF Y +
Sbjct: 896 DLSTQYDDTVR-TSEGGIVQFQYGAD 920
>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
Length = 880
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 224/887 (25%), Positives = 369/887 (41%), Gaps = 164/887 (18%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I G++FG+ + EI S++ S + +P LG+ KC CG
Sbjct: 3 EKIIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGEKCPVCG 62
Query: 62 TSEPGKCEGHFGYIELPIP---IYHPSHISEL---------------------------- 90
+ G C GHFG+IEL P I + HI +
Sbjct: 63 NTLAG-CPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAI 121
Query: 91 ---------KLTMYAFQLQIKN-------------------------DGVAQRLLSSCCE 116
+L Y ++ IKN +G +L S E
Sbjct: 122 KLRWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKL--SPSE 179
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLS 172
+++ L+RIP+ + L GY P+ IL LPVPP + P I+ + D
Sbjct: 180 IRDRLERIPDSDVELL---GYDPKSSRPEWMILTVLPVPPITIR-PSITIESGIRAEDDL 235
Query: 173 IAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ E ++ S +G P +++ + LQ V Y E+ G +
Sbjct: 236 THKLVDIIRLNERLKESIEAGAPQLIIEDL-WDLLQYHVATYFDNEIPGLPPAKHR---- 290
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P T L+ F SG FS+R+VI+ D ++E+G+P+ IA+ +
Sbjct: 291 ---SGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIARML 347
Query: 286 TFEERVNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVV 336
T ERV NI +++ + N + DG +++ + + + G VV
Sbjct: 348 TVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAGYVV 407
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R ++DGD V NR P+ H+ S+ A V V T ++N L C P +ADFDGD ++L P
Sbjct: 408 ERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNLHVP 467
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD-----ALLSLKVMFKKYFLDKAFTQQ 451
QS A AE EL V K +++ G + D LLS+K +++ T
Sbjct: 468 QSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTL--LTVEEVATIL 525
Query: 452 LAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDF-DRD 510
+ L PA+ + +T Q++ LP F+ G + K K + D
Sbjct: 526 GVTDFVGELGEPAILAPK--PYYTGKQVISLFLPKDFNFHGPANISKGPRACKDEICPHD 583
Query: 511 TIPSVINEIVTSIFFEKG------PEEVL-----EFFDSLQPLLMENLFA--------DG 551
+ + N ++ F+K PE +L E+ LM+N+F G
Sbjct: 584 SFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRG 643
Query: 552 FSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL-------VDLQIENHI--- 599
F+++LED ++ A I +I+ YS + Y R + +L ++ +E++I
Sbjct: 644 FTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDT 703
Query: 600 ----RHVKMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLV 654
R V +A K++ + + + + + + + Q LG Q S RG+ +
Sbjct: 704 LDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALLG-QQSVRGERIRRGYR 762
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
E S F+ D+ P A+ G +K F GL PYE H+ RE +V ++ S+ G
Sbjct: 763 ERTLSLFKY---GDIA-PEAR-GFVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSG 817
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA 761
+ + L+ L D+ I YDGTVR++ + I+Q Y +A H ++ A
Sbjct: 818 YMQRRLINALSDLRIEYDGTVRSLYGD-IVQVVYGDDA--VHPMYSA 861
>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
Length = 1369
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 160/646 (24%), Positives = 282/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + + L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRVRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N IV +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGELMFGLFNKKSVGTGSNGIVHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDIGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFVYG 794
>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
Length = 872
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 275/628 (43%), Gaps = 67/628 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANSNVDRCEQEGAPGHVINEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L E V N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L V Q++S + + + D L ++ M + F+D + Q + +
Sbjct: 306 QSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFID--YEQVMNIC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P PA+ K + WT Q+ +P G FD + I
Sbjct: 364 FWVPGWDGVVPHPAILKPK--PLWTGKQMASLCIPKGIHLQRFDDSNPIISPKDNGMYIV 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+++ G D+ TI + +V +I EKG + FF S+Q + L +GFS+ + D
Sbjct: 422 DGQIIYGVVDKKTIGATGGGLVHTIMREKGSQICCNFFGSIQKTVNFWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNIQKEI----QALYSLLYHRMS---------TQNELVDLQIE---NHIRHV 602
+ +I I Q + ++ + T E + + N R
Sbjct: 482 TIADAGTMRDITNTIAEAKQKVQEIINDAQANTLSPEPGMTLRESFEHNVSRVLNQARDT 541
Query: 603 KMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
A+ LK + + ++ S S + + Q + +G Q+ + GK + HF
Sbjct: 542 AGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPYGFSDRTLPHF 600
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ +Y G I+ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 TKD-----DYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 655
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV++ YDGT RN + IIQF Y
Sbjct: 656 KALEDVMVQYDGTTRNSLGD-IIQFVYG 682
>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
Length = 1159
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 177/706 (25%), Positives = 306/706 (43%), Gaps = 98/706 (13%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
KG P+ YI YLP PP C+ P + + DL++ L +++ +I++
Sbjct: 247 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSMIKAGILKG 303
Query: 194 PNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
+ + + + +QL+V Y+ + S+ + G + +A+ ++++ R
Sbjct: 304 ISINNLMEQWDYMQLSVAMYI----NSDSANPALSAGGGGAKASKPIRAFCQRLKGKQGR 359
Query: 254 -------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--- 303
K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ LV
Sbjct: 360 FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNG 419
Query: 304 ------DNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKH 357
N + G + + +K L+ G VV R I DGD V NR P+ H+
Sbjct: 420 PDTYPGANYVAKQNEPGKRNLRFGDRAKLAKNLQIGDVVERHIEDGDVVLFNRQPSLHRL 479
Query: 358 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLS 417
S+ + V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+
Sbjct: 480 SILSHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539
Query: 418 SHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCS 471
+G + D + S + K F D+A +Q L+M + + +P PA+ K
Sbjct: 540 PKSGEPIIAATQDFITGSYLISHKDSFFDRASLSQLLSMMSDANIQFDIPPPAIFKP--V 597
Query: 472 ARWTALQILQSVLPP--------GFDSCGDRY------------------LIKKSEVLKG 505
WT Q+ ++ P D+ + +I+ S++L G
Sbjct: 598 MLWTGKQVFSLLIKPNKQSKVVINLDAKNKTFHPPAKGLPNEMSPNDGFVVIRGSQILSG 657
Query: 506 DFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
D+ T+ + + +I + GP+E + + + L GFS+ + D + +
Sbjct: 658 LMDKSTLGDGKKHSVFYTILRDYGPQEAANAMNRMAKMCARYLGNRGFSIGINDVTPADE 717
Query: 565 ALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQI--------------ENHI 599
+ ++ Y LY+R + TQ NE L+ E I
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI 777
Query: 600 RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
R + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 778 RELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL-----P 828
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + +
Sbjct: 829 HFTK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRR 883
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
LM L D+ YD TVRN SN I+QF Y + + + PV
Sbjct: 884 LMKSLEDLSTQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDARPV 928
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 283/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI L++LV N + + Y +RE ++ LR G
Sbjct: 301 TYPETVTRFNIERLKQLVTNGPQM---HPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDIILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKPGQPPVERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVAAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDQAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N ++QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-VVQFIYG 794
>gi|226876245|gb|ACO89443.1| RNA polymerase II largest subunit, partial [Arachniotus littoralis]
Length = 992
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 161/632 (25%), Positives = 266/632 (42%), Gaps = 73/632 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + V ++ +G+P +E E+ LQ V Y+ + + KS+
Sbjct: 184 DLTYKLAEIVRANGNVLECESAGSPEHVVREFEAL-LQYHVATYMDNDIAGQPQAMQKSN 242
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R V A G K ++R + K FS+R+VITGD ++E+GVP IAQ
Sbjct: 243 RPVKALRG-------RLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKTIAQ 295
Query: 284 RITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
+T+ E V +NIN L +LVDN + + + +G G FL+ G
Sbjct: 296 TLTYPEVVTPYNINKLAQLVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQWGWK 355
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD V V T ++N + P +ADFDGD ++L
Sbjct: 356 VERHLMDGDXXXX----XXXXXXXXXXXVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 411
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS A+AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 412 PQSEEARAELNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDEFLTREQVMNILL 471
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPGFDSC---GDR-------------- 494
+ +P+PA+ K R RWT Q++ VLP G + DR
Sbjct: 472 WVPEWDGVVPQPAILKPR--PRWTGKQMISMVLPSGLNLLRVDKDRAPLSEKFSPLADGG 529
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
L+ E++ G F + T+ + I+ +I+ E GPE + FF+ Q ++ L +GFS+
Sbjct: 530 LLVHGGELMYGMFSKKTVGATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSI 589
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL---------------VDLQIEN 597
+ D A + I+ ++ + +T N L V + N
Sbjct: 590 GIGDTIPDNATIEKIENAVRIRKEEVDSITESATDNTLEALPGMNVRETFESKVSRALNN 649
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
K + + + S S + + Q +G Q S GK
Sbjct: 650 ARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVG-QQSVEGKRIPFGFKYRT 708
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF + +Y G + + GL P E H+++ RE ++ ++ +E G +
Sbjct: 709 LPHFTKD-----DYSPESRGFVHNSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 763
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L +V++ YDGTVRN + IIQF Y
Sbjct: 764 RKLVKALEEVMVKYDGTVRNSLGD-IIQFLYG 794
>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis
aries]
Length = 1390
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 217/841 (25%), Positives = 347/841 (41%), Gaps = 143/841 (17%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ S N I + + G E + L L L GFS+ + D + + L
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKH 714
Query: 571 KEIQALYSLLYHRMSTQN----------------ELVDLQIENHIR-HVKMLVAKFILKS 613
+ + A Y + N E + L+ + IR H + + KS
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDL 669
++ + S + + Q +G Q + F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSL-----PHFEKHSKL-- 827
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 --PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN 789
YD TVR+ + IIQF Y + ++ EP+ +K VLD+
Sbjct: 885 QYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL-----------EFKRVLDN----- 927
Query: 790 NSWELMKEILLCR----VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSL 845
+K + CR +S N + I+ N+ C CQ+ +K +K VS
Sbjct: 928 -----IKAVFPCRSEPALSKNELLLSAESIMKKNEFLC----CQDSFLQEIKKFIKEVSE 978
Query: 846 K 846
K
Sbjct: 979 K 979
>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Callithrix jacchus]
Length = 1390
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 168/673 (24%), Positives = 291/673 (43%), Gaps = 89/673 (13%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
IL +LPVPP C+ P + S++ I M K+++ +E+ R G + +
Sbjct: 266 ILTHLPVPPVCIR-PSVEMEGQAGSNEDDITM--KLIQIIEVNNVLRQGL----EKGLAI 318
Query: 204 NDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR-------KGS 256
N+L + +L+++ + ++ Q P + ++++++ R K
Sbjct: 319 NNL-MENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRV 377
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL-------CL 309
FS R+VI+ D R++E+GVP IA+ +T+ E V+ HNI ++E V N + +
Sbjct: 378 DFSGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPGANFV 437
Query: 310 TYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
+ G + Y L+ G + L+ G VV R + DGD + NR P+ HK S+ A V
Sbjct: 438 RFKSGGTQY-LKYGDRRRVASELKYGDVVERHLHDGDVLLFNRQPSLHKMSIMAHRARVM 496
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T++ N +C P +ADFDGD +++ PQ+ A+AE + L SV L + NG + +
Sbjct: 497 PWRTLRFNECVCTPYNADFDGDEMNIHCPQTEEARAEAINLMSVHNNLCTPKNGEILVAA 556
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQL------AMFALSPLPRPALSKARCSARWTALQIL 480
D L + ++ + +FLD+A L A+ A+ LP PA+ K WT Q+
Sbjct: 557 TQDFLTASYILTARDHFLDRAQVGALIAYMGDALMAVD-LPTPAIIKP--VELWTGKQLF 613
Query: 481 QSVLPP---------------GFDSCGDRYL--------IKKSEVLKGDFDRDTIPSV-I 516
++ P + R++ I+ SE++ G + T+ S
Sbjct: 614 SVLIRPRAVDRVFVNLEVAEKNYSKKDTRHMCPRDGYVCIQNSEIMCGQLGKATLGSGNK 673
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL 576
N + + E G E+ + + L L GFSV ++D + K +
Sbjct: 674 NGLFYVLNSEYGSEQTASCMNRVAKLSARWLGTRGFSVGIDDVTPGHRLQDEKGKVVDRG 733
Query: 577 YSLLYHRMST-------------QNELVDLQIENHIRHVKMLVAKFIL------KSSTLG 617
Y R+ + ++ ++ + V+ L + +
Sbjct: 734 YGACDERIEAFKRGTLALQPGCNAEQTLEAEVLGILSTVRETAGNVCLDELPRHNAPLIM 793
Query: 618 YLIDSKSDSA-VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY 676
L SK + +S++V G Q + G E HF+R P AK
Sbjct: 794 ALCGSKGSTINISQMVACVG----QQAVGGTRPPDGFAERSLPHFKR----GEKTPAAK- 844
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + FF G+ P E H+++ RE +V ++ +E G + + LM L D+ + YDGTVR
Sbjct: 845 GFVANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVR 904
Query: 737 NVCSNSIIQFDYA 749
N + I+Q Y
Sbjct: 905 N-STGGIVQLSYG 916
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 178/747 (23%), Positives = 306/747 (40%), Gaps = 89/747 (11%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K +GH G Y PS + L + A + D +++ + V E+LK
Sbjct: 164 DPNKKQGHGGCGH-----YQPS-LRRTGLDVIAEWKTVNEDSQEKKIAVTAERVWEILKH 217
Query: 124 IPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L F + D I+ LPVPP + + G + DL+ + V
Sbjct: 218 ITDEECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIVKSN 277
Query: 183 VEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
E+ ++ +G F + ND+ G ++ + K + V +R
Sbjct: 278 NELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMP---GMPKAMQKSGKPLKSVKSRL- 333
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
K ++R + K FS+R+VIT D R++++GVP +AQ +TF E V
Sbjct: 334 ---------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELV 384
Query: 292 NVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGD 344
NI+ +QELV D LR K L+ G V R + D D
Sbjct: 385 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDD 444
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AE
Sbjct: 445 LVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE 504
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PL 460
+ + +Q+++ + + D L +++ M K+ FL+K L MF + +
Sbjct: 505 IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKM 564
Query: 461 PRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKK 499
P+P + K + WT QI ++P + S GD + +++
Sbjct: 565 PQPCILKPK--PLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 622
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E++ G + T+ + ++ +F E G E F+ ++Q ++ L +G S+ + D
Sbjct: 623 GELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDT 682
Query: 560 SLSKAALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV-------- 602
A IQ+ I+ + H M T + EN + +
Sbjct: 683 IADPATYTEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKT 742
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 743 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF- 800
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 801 ----IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIK 856
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ V++ YDGTVRN +IQ Y
Sbjct: 857 AMESVMVNYDGTVRNSVGQ-LIQLRYG 882
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+++ I +A L +P G+ +C++C +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGNM-T 73
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+I+L P++H
Sbjct: 74 ECPGHFGHIDLAKPVFH 90
>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
Length = 1390
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KIAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|302817897|ref|XP_002990623.1| hypothetical protein SELMODRAFT_1456 [Selaginella moellendorffii]
gi|300141545|gb|EFJ08255.1| hypothetical protein SELMODRAFT_1456 [Selaginella moellendorffii]
Length = 350
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 22/331 (6%)
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-DNKLCLT 310
+ K + + + +++TGDAY V EI +P EI++++T ERV N + LQ +V D ++CL
Sbjct: 2 LSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTSFNADKLQAIVNDLQVCLA 61
Query: 311 -----------YSDG-----SSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
Y G + LR S L G VVHR + DGD VF++R P
Sbjct: 62 CLYCFGFDFREYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPAV 121
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
+KHS+ AL+ +H + +INPL+C PL DFDGD +H+++PQ+ A+ E EL +++Q
Sbjct: 122 YKHSVIALTARIHPGKSFRINPLVCSPLKGDFDGDRLHVYFPQAEDARVETRELMGLKQQ 181
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKY-FLDKAFTQQLAMFALS-PLPRPALSKARCSA 472
+ +GN + L D L++ ++ ++ F QQL + A LP PA+ K R A
Sbjct: 182 FQALSSGNPVISLTQDMLVAAYMLVSRHSFFTAPQIQQLGLHADRWSLPDPAIVKPR--A 239
Query: 473 RWTALQILQSVLPPGFD-SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
WT Q +LP S LI E++ D + + ++ +I + G E
Sbjct: 240 LWTGFQAFGLLLPSELAFSTRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGVAE 299
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
+ + DS +L E L +GFS+ L DFS+S
Sbjct: 300 AIAYLDSCCSMLKEFLHIEGFSIGLGDFSVS 330
>gi|397135864|gb|AFO11427.1| RNA polymerase I, partial [Kodamaea ohmeri]
Length = 870
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 157/627 (25%), Positives = 276/627 (44%), Gaps = 67/627 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + + G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQKLEMDGSPAHVIAEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 360
Query: 453 AMFALSP---LPRPALSKARCSARWTALQILQSVLPPGF---DSCGDR-------YLIKK 499
+ P P + + W+ QIL +P G D D LI
Sbjct: 361 NICYWIPDWDGVIPPPAIIKPKPLWSGKQILSLAIPKGIHLQDGVKDMLSPNDSGMLIVD 420
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E++ G + T+ + ++ ++ EKGP E + F S+Q L+ L +GFS+ + D
Sbjct: 421 GEIMFGVVLKKTVGASAGGLIHTVMREKGPYECAKLFSSIQKLVNYWLLHNGFSIGIGDT 480
Query: 560 SLSKAALWNIQKEIQALYSLLYHRMS--TQNEL-----VDL---------QIENHIRHVK 603
A + N+ + IQ + +S QN L + L +I N R
Sbjct: 481 IADSATMKNVTETIQEAKEKVLEIISDAQQNRLEPEPGMTLRESFEHNVSRILNQARDTA 540
Query: 604 MLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
A+ LK + + ++ S S + + Q + +G Q+ + GK + HF
Sbjct: 541 GRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRTLPHFT 599
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 600 KD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 654
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+++ YDGT RN + I+QF Y
Sbjct: 655 ALEDIMVHYDGTTRNSLGD-IVQFIYG 680
>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=DNA-directed RNA polymerase III subunit A;
AltName: Full=RNA polymerase III 155 kDa subunit;
Short=RPC155; AltName: Full=RNA polymerase III subunit
C160
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
Length = 1390
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 179/731 (24%), Positives = 303/731 (41%), Gaps = 88/731 (12%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P + L + A I + ++++ S V E+ KRI +E L F +
Sbjct: 101 YQPK-LRRTGLEIVAEWKNINEESQERKMIVSAERVLEIFKRISDEESLMLGMDPRFARP 159
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN---FE 197
D IL PVPP + + G + DL+ + V ++ R+ ++G FE
Sbjct: 160 DWMILTVFPVPPLPVRPAVVMFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIIFE 219
Query: 198 SQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLF 251
++ V + R KS R P + K L+ ++R
Sbjct: 220 DSKMLQYHCSTLVDNEMPGLPRAVQKSGR-----------PLKSVKQRLKGKEGRVRGNL 268
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL-- 309
+ K FS R+VIT D RV+++GVP IA +TF E V NI+ +QE V +
Sbjct: 269 MDKRVDFSGRTVITPDPNLRVDQVGVPRSIAHNLTFPELVTPFNIDVMQERVRRGANVYP 328
Query: 310 ----TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
D LR K L+ G V R + D D V NR PT HK S+ V
Sbjct: 329 GAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDVVIFNRQPTLHKMSMMCHRV 388
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V T ++N + P +ADFDGD ++L PQSL +AE++ L +V + +++
Sbjct: 389 KVLPWSTFRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIMNLCAVPRMIITPQANRPV 448
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L +++ M K+ FL +A L MF + +P+PA+ K WT QI
Sbjct: 449 MGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMFLPTWDGRMPQPAIIKP--EPLWTGKQIF 506
Query: 481 QSVL-------------PPGFDSC-------GD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
V+ P G DS GD + LI+ E++ G + T+ + +
Sbjct: 507 SLVIPGRVNVIRTHSTHPDGEDSGPYKWISPGDTKVLIEDGELISGILCKKTLGTSAGSL 566
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL 579
V +F E G E E + ++Q ++ L +G S+ + D + IQ+ I+ +
Sbjct: 567 VHIVFLEMGFEVAGELYGNIQTVVNNWLLIEGHSIGIGDTIADQQTYHEIQETIRKAKAD 626
Query: 580 LYHRMS---------TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDS 622
+ + T + EN + + K + + + ++ +
Sbjct: 627 VIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVA 686
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
S + + Q +G Q ++ + F +TL HF + +Y G
Sbjct: 687 GSKGSKINISQVIACVGQQNAEGKRIPFGFRYRTL-----PHF-----IKDDYGPESRGF 736
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 737 VENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQ 796
Query: 739 CSNSIIQFDYA 749
++Q Y
Sbjct: 797 VE-QLVQLGYG 806
>gi|335438708|ref|ZP_08561444.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
gi|334890830|gb|EGM29090.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
Length = 996
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 169/683 (24%), Positives = 298/683 (43%), Gaps = 73/683 (10%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDIS-DGVSTMSS 169
++++ + IP++ L G P+ +L LPVPP + P I+ D
Sbjct: 275 SDIRDWFEEIPDD---DLEAIGVNPETSRPEWMVLTVLPVPP-VTARPSITLDNGQRSED 330
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ ++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 331 DLTHKLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH--- 386
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ F SG FS+R+VI+ D +NE+GVP +A
Sbjct: 387 ----RSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAS 442
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTF-----------LRP 332
+T VN N+ ++ V N S ++Y R + + P
Sbjct: 443 EMTQTMNVNERNLAEARQYVANG---PESHPGANYVRRPDGRRLKVTEKNCEELAEKVEP 499
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G V R ++DGD V NR P+ H+ S+ A V V T ++N ++C P +ADFDGD ++
Sbjct: 500 GWEVARHLLDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMN 559
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQ 450
+ Q+ A+AE L V++QLLS G + D + ++ ++ + F +
Sbjct: 560 MHALQNEEARAEARVLMRVQEQLLSPRFGENIIGAIQDHITAVYLLTNQNPTFNETQALD 619
Query: 451 QLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKKSEVLKG 505
L + LP P + A WT I +LP D GD +I+ ++L G
Sbjct: 620 LLRATNVDELPEPD-GEEDGRAYWTGRSIFSELLPDDLDLEFTSEAGDDVVIEDGQLLDG 678
Query: 506 DFDRDTIPSVINEIVTSI--FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
D + + EIV +I ++K + F + + L + + GFS+ ++D S+
Sbjct: 679 TIDDSAVGAFGGEIVDTIAKVYDKTRARI--FINEVSTLAVRTIMHFGFSIGIDDESIPP 736
Query: 564 AALWNIQKEIQALYSLLYHRMSTQN----------------ELVDLQIENHIRHVKMLVA 607
AA+ + + I++ Y + + T E+ +Q R +A
Sbjct: 737 AAVEQVDEAIESAYDRVQELIETYEAGELESLPGRTVDETLEMKIMQTLGQARDSAGDIA 796
Query: 608 KFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ S ++ DS + ++ + Q AG +G Q RG+ ++ + SHFE
Sbjct: 797 EDHFASDNPAVVMADSGARGSMLNLTQMAGAVGQQAV-RGERINRGYEDRTLSHFE---A 852
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
DL+ +G ++ + GL P E H++ RE +V ++ S+ G L + L+ L +
Sbjct: 853 NDLS--AEAHGFVEHSYREGLGPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALHE 910
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVR+ S+++IQF++
Sbjct: 911 LETQYDGTVRD-SSDTVIQFEFG 932
>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
Length = 1383
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 210/806 (26%), Positives = 340/806 (42%), Gaps = 131/806 (16%)
Query: 56 KCESCGTSEPGKCEG-------HFGYIELPIPIYHPSHISELKLTMYA---FQLQIKNDG 105
KC CG+ G +G H Y + +HI+EL + A + N
Sbjct: 153 KCPHCGSPNGGVKKGPGLLKILHDPYKGRKVDSLFTNHINELLRSTEANRDLNSTLGNYS 212
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDIS 161
A+ L + V ++ ++IP+ + +A G D + I+ + VPP C+ +S
Sbjct: 213 TAEEL--TPLMVLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLS 267
Query: 162 D-GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG 218
+ T DL++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 268 EVKAGTTEDDLTMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISG 326
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKR 271
++ P TT+ +++++ R K FS R+VI+ D
Sbjct: 327 IP-----------INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLM 375
Query: 272 VNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSS-----SYSL 320
+N++GVP +A+ +T+ ERVN N+ +++ELV N + GSS +Y
Sbjct: 376 INQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGN 435
Query: 321 REGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
RE K L+ G +V R + DGD V NR P+ HK S+ V T + N C
Sbjct: 436 RE--KVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACT 493
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQ+ A+AE L L + L++ NG + + D + ++ +
Sbjct: 494 PYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQ 553
Query: 441 K-YFLDKAFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
K FL K QLA LS LP PAL K R WT Q+ ++ P DS
Sbjct: 554 KEVFLTKEEAMQLAACFLSNEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDSH 611
Query: 492 --------GDRYL-------------IKKSEVLKGDFDRDTIPSVINEIVTSI----FFE 526
G Y I+ SE++ G D+ T+ S + + + F E
Sbjct: 612 VRLNMVNKGRNYTRNMDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGE 671
Query: 527 KGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST 586
+ + + ++N GFS + D + SK L + KE+ LL + +
Sbjct: 672 LHATKAMWRLARIASYFLQN---RGFSFGISDVTPSKKLLQH--KEL-----LLNNGYAK 721
Query: 587 QNELVD------LQIE--------------NHIRHVKMLVAK--FILKSSTLGYLIDSKS 624
NE +D LQ + + ++ AK F T LI + S
Sbjct: 722 CNEYIDMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALS 781
Query: 625 DSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S S + Q +G Q + GK HFER + P A+ G ++
Sbjct: 782 GSKGSNINISQMIACVG-QQAISGKRVPNGFENRALPHFERHSAI----PAAR-GFVQNS 835
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
F+ GL P E H+++ RE +V ++ +E G L + L+ L D+V+ YDGTVRN N
Sbjct: 836 FYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NE 894
Query: 743 IIQFDYAVNARKSHSLFPAGEPVGVL 768
++ Y + S+ +PV ++
Sbjct: 895 MVDTIYGGDGLDPVSMETRNKPVDLV 920
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 62
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 63 KDATCETCGQGL-NECIGHFGYLDLALPVFHIGH 95
>gi|157741574|gb|ABV69492.1| RNA polymerase II largest subunit, partial [Parabagliettoa
dufourii]
Length = 999
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 158/646 (24%), Positives = 283/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP +A+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARVL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V + N+ L+ LV N + + Y +RE ++ G L+ G
Sbjct: 301 TYPETVTLFNMGKLKRLVTNG---PENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
+ R I DGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 IERHIQDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPGERFGPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N IV +IF E GPE FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGQLMFGLFNKKSVGTGSNGIVHTIFNEFGPETATSFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 177/695 (25%), Positives = 300/695 (43%), Gaps = 116/695 (16%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS------------IAMLKKVLKQVEII 186
P+D YI +Y+ VPP C+ P ++ DL+ +A++ + + +E+I
Sbjct: 255 PED-YIWQYISVPPPCIR-PSVASEAGNNEDDLTAKLAEIVNYNNTLALMMDLGRGIEMI 312
Query: 187 RSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK 246
S N+E L AV Y+ + + G Q K +
Sbjct: 313 SS------NWEV-------LGQAVALYINSQAPGMQTIGSKPIRGFVQ----RLKGKQGR 355
Query: 247 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--- 303
R K FS R+VI D R++E+ VP ++A ++++ ERV +N+ +++ +
Sbjct: 356 FRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIING 415
Query: 304 ------DNKLCLTYSDGSS-SYSLR-----EGSKGHTF-LRPGQVVHRRIMDGDTVFINR 350
N L + +GS+ SL E K + L+ G +VHR + DGD V NR
Sbjct: 416 SKLHPGANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNR 475
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
P+ HK S+ V V T ++N +C P +ADFDGD ++L PQ+ A+ E LEL S
Sbjct: 476 QPSLHKLSIMCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMS 535
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLAMFALSPL----PRPA 464
V+K L++ NG + D + + ++ + +++ + FTQ ++ + L P P
Sbjct: 536 VKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPT 595
Query: 465 LSKARCSARWTALQILQSVLPPGFDS---------C------------------GDRYL- 496
+ K WT QI ++ P +S C D YL
Sbjct: 596 IWKP--VRLWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLV 653
Query: 497 IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
I+ SE++ G FD++T+ N + I + GPEE + + L + L GFS+
Sbjct: 654 IQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLG 713
Query: 556 LEDFSLSKAALWNIQKEIQALYSL--LYHRMSTQNEL-----------VDLQIENHIRHV 602
+ D + ++ Y ++ ++ + +L ++ +I + V
Sbjct: 714 INDVIPGPILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDV 773
Query: 603 KMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLSD----RGKFYSKTLV 654
+ V K ++ S LI + S +V V Q +G Q+ R F ++L
Sbjct: 774 REAVGKICMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSL- 832
Query: 655 EDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
HF + N P+ G ++ FF GL P E + H++S RE +V ++ +E G
Sbjct: 833 ----PHFRK---KSKNPPSK--GFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETG 883
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + LM L D+ YD +VRN I+QF Y
Sbjct: 884 YMARRLMKALEDLCTHYDLSVRNSVG-GIVQFQYG 917
>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
Length = 1458
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 183/701 (26%), Positives = 299/701 (42%), Gaps = 102/701 (14%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +V+ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEVVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE-------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR 253
+ LQL+V Y+ + A + V G Q K + R
Sbjct: 314 EHWDYLQLSVAMYINSDSVNPLLMPGASTGNKVKPIRGFCQ----RLKGKQGRFRGNLSG 369
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------K 306
K FS R+VI+ D ++E+ VP +A+ +TF ERV +N LQ LV N
Sbjct: 370 KRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALVLNGPNVHPGA 429
Query: 307 LCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
L D + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 NYLLKKDEEARRNLRYGDKVKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYA 489
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 KIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 549
Query: 425 LQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTALQ 478
+ D + S + K F D+A FTQ L+M L P PA+ K C WT Q
Sbjct: 550 IAATQDFITGSYLISHKDSFFDRATFTQLLSMMCDGNLQFDIPPPAIMKP-CYL-WTGKQ 607
Query: 479 ILQSVLPPG---------------FDSCGDRYL------------IKKSEVLKGDFDRDT 511
+ ++ P F D+ L I+ S++L G D+
Sbjct: 608 LFSLLIKPNSNSPVVINVDAKNKVFKPPKDKSLPSEMSPNDGFVVIRGSQILSGVMDKSV 667
Query: 512 I-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ + + +I + GP+E + + L L GFS+ + D + L N++
Sbjct: 668 LGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGINDVT-PDDKLKNLK 726
Query: 571 K-----------EIQALYSLLYHRMSTQ-----NELVDLQIENHIRHVKMLVAKFILKS- 613
+ E+ LY+ ++ TQ + ++ +I + V+ V +
Sbjct: 727 ENLVEIAYAKCDELIGLYN--QGKLETQPGCNEEQTLEAKISGILSKVREEVGDICINEL 784
Query: 614 ---------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
+T G + + S + VV Q G ++ D F ++L HF++
Sbjct: 785 DNWNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHFQK- 836
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 837 ---NSKTPQSK-GFVRNSFYSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 892
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
D+ YD TVR SN I+QF Y + + +PV
Sbjct: 893 EDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPFDMEGNAQPV 932
>gi|157130170|ref|XP_001655623.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108871980|gb|EAT36205.1| AAEL011692-PA [Aedes aegypti]
Length = 1298
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 186/715 (26%), Positives = 298/715 (41%), Gaps = 95/715 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKG--YFPQDGYILEYLPVPPNCLSVPDISD-GVSTMSSDLS 172
EV ++ K IP+ L P D I+ + VPP C+ +S+ T DL+
Sbjct: 224 EVLDLFKNIPKSDIPLLGMTSPESNPAD-LIVTRVFVPPVCIRPSVVSEVKAGTTEDDLT 282
Query: 173 IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ + +L I + SG E + + + LQL Y E+ G S
Sbjct: 283 MKQSEILLISDVIAKHMMSGG-KIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTR 341
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G+ Q K + R K FS+R+VI+ D ++++GVP +A+ +TF ER
Sbjct: 342 GIVQ----RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPER 397
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFL------------RPGQVVHR 338
VN NIN +++L+ N T ++Y ++GS +L + G +V R
Sbjct: 398 VNTANINKMRQLIKNG---TEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVER 454
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+MDGD V NR P+ HK S+ V T + N C P +ADFDGD ++L PQ+
Sbjct: 455 HLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQT 514
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL 457
A+AE L L + L++ NG L + D + ++ +K FL + QLA L
Sbjct: 515 EEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTREQVMQLAACML 574
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDR 509
S LP+PA+ K R WT QI +L P D + L K
Sbjct: 575 SGPDANMEIDLPKPAIIKPR--KMWTGKQIFSLILKPNKDCIVNANLSTK---------- 622
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
D PS + EK + L +G+S E + K
Sbjct: 623 DVTPS------RKLLQEK-----------------QKLLENGYSRCDEYIAEMKKGTLQC 659
Query: 570 QKEI---QALYSLLYHRMSTQNELVDLQI--ENHIRHVKMLVAKFILKSSTLGYLIDSKS 624
Q Q L +++ +S+ EL E H + +++A+ K S +
Sbjct: 660 QPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNIN------- 712
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+S+++ G Q + GK + HFE+ + P A+ G ++ F+
Sbjct: 713 ---ISQMIACVG----QQAINGKRVPNGFEDRALPHFEKFSKI----PAAR-GFVQNSFY 760
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H+++ RE +V ++ +E G L + L+ L D+V+ YDGTVRN ++
Sbjct: 761 SGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIG-EVV 819
Query: 745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEIL 799
+F Y + + +PV + Y ++ S N + +EIL
Sbjct: 820 EFTYGADGLDPVYMEIKNKPVDIDRQFMHVRSVYPCRNEAPLSGNEILPVAEEIL 874
>gi|157741570|gb|ABV69490.1| RNA polymerase II largest subunit, partial [Verrucaria cyanea]
Length = 999
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 158/646 (24%), Positives = 283/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP +A+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARVL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V + N+ L+ LV N + + Y +RE ++ G L+ G
Sbjct: 301 TYPETVTLFNMGRLKRLVTNG---PENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
+ R I DGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 IERHIQDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKSSQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N IV +IF E GPE FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGQLMFGLFNKKSVGTGSNGIVHTIFNEFGPETATSFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKLEVDKKKTEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGPKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|452208508|ref|YP_007488630.1| DNA-directed RNA polymerase subunit A' (subunit A) [Natronomonas
moolapensis 8.8.11]
gi|452084608|emb|CCQ37955.1| DNA-directed RNA polymerase subunit A' (subunit A) [Natronomonas
moolapensis 8.8.11]
Length = 1059
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 170/658 (25%), Positives = 283/658 (43%), Gaps = 81/658 (12%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 362 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 420
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 421 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 472
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL----TYS 312
FS+R+VI+ D +NE+GVP +A +T VN N+ + V N + Y
Sbjct: 473 NFSARTVISPDPTLSLNEVGVPDRVASEMTQTMNVNERNLQDARRYVSNGPEVHPGANYV 532
Query: 313 DGSSSYSLREGSKG----HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
L+ K ++PG V R ++DGD V NR P+ H+ S+ A V V
Sbjct: 533 KRPDGRRLKVTEKNCEELAEKIQPGWEVARHLIDGDIVIFNRQPSLHRMSIMAHEVVVMP 592
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N +C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 593 YKTFRLNTTVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAI 652
Query: 429 TDALLSLKVMFKK--YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + L ++ + F + L ++ LP P WT + +LP
Sbjct: 653 QDHISGLYLLTHENPQFNETQALDLLRATSIDGLPAPDGVDDDGIEYWTGRSLFSELLPD 712
Query: 487 GFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
G D S GD ++ ++++G D D + + EIV +I G F + +
Sbjct: 713 GLDLEFTSSAGDSVTVEDGQLVEGTIDEDAVGAFGGEIVDTICKVYGNTRARVFVNEVAT 772
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHI-- 599
L M ++ GFS+ ++D S+ + A I + I NE V+ IE +
Sbjct: 773 LAMRSIMHFGFSIGIDDESIEREAEEQIAEAI-----------DNANERVETLIETYRNG 821
Query: 600 -------RHVKMLVAKFILKSSTLGYLIDSKSDSA---------------------VSKV 631
R V + I++ TLG DS D A + +
Sbjct: 822 ELESLPGRTVDETLEMKIMQ--TLGKARDSAGDIADDHFGDDNPAVVMAQSGARGSMLNL 879
Query: 632 VQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYE 691
Q AG +G Q RG+ ++ + SHF+ P DL+ + +G ++ + +GL P E
Sbjct: 880 TQMAGCVGQQAV-RGERINRGYEDRTLSHFK---PNDLS--SEAHGFVENSYRNGLTPRE 933
Query: 692 EMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE +V ++ S+ G L + L+ L ++ YDGTVR+ S++++QF++
Sbjct: 934 FFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTVVQFEFG 990
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 21 LATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIP 80
++ K I + D L +P LG+ +C++CG G C GHFG+IEL P
Sbjct: 25 MSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCG-KHSGSCNGHFGHIELAAP 83
Query: 81 IYHPSH 86
+ H H
Sbjct: 84 VVHVGH 89
>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
Length = 872
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 153/637 (24%), Positives = 276/637 (43%), Gaps = 85/637 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ + WT Q+L +P G FD +
Sbjct: 361 NMLYWIPNWDGVIPPPAIVSPK--PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
L+ E++ G D+ T+ + ++ ++ EKG + + F S+Q ++ L +GFS+
Sbjct: 419 LVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ--------------------- 594
+ D + + ++ IQ + Q ++D Q
Sbjct: 479 IGDTIADSSTMRDVTTTIQDA------KDKVQEIILDAQSNKLEPEPGMTLRESFEHNVS 532
Query: 595 -IENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ N R A+ LK + + ++ S S + + Q + +G Q+ + GK
Sbjct: 533 RVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE-GKRIPFG 591
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF + +Y G ++ + GL P E H+++ RE ++ ++ +E
Sbjct: 592 FADRSLPHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L D+++ YDG+ RN + IIQF Y
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGSTRNSLGD-IIQFVYG 682
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 169/711 (23%), Positives = 292/711 (41%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++++ + E+LK I +E L F + D ++ LPVPP +
Sbjct: 196 HVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPA 255
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E++R+ ++G F + ND+
Sbjct: 256 VIMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISENIKMLQFHVATLVDNDMP 315
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 316 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +QELV D LR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 423 FHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K + MF S +P+P + K + WT QI ++P +
Sbjct: 543 RDVFIEKEQMMNILMFLPSWDGKMPQPCILKPK--PLWTGKQIFSLIIPGNVNMIRTHST 600
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G E F
Sbjct: 601 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF 660
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRMS---T 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 661 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 720
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 721 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 780
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 781 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 884
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 170/728 (23%), Positives = 313/728 (42%), Gaps = 83/728 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P + L + A +I + +++ + V E+ KRI +E L G+ P+
Sbjct: 148 YQP-RFRRIGLELTAEWKKINEESQERKITLTAERVLEVFKRISDEDCLSL---GFDPRY 203
Query: 141 ---DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
D I+ LPVPP + + G + DL+ + + ++ R ++G
Sbjct: 204 ARPDWMIITVLPVPPLAVRPAVVMYGATRNQDDLTHKLADIIKANNQLRRDEQNGA---- 259
Query: 198 SQEVESNDLQLAVGQYLEVRGTAKSSRDVDA---RFGVSQDPNSTTKAWLE----KMRTL 250
+ + + D+++ L+ T + DV S P + K L+ ++R
Sbjct: 260 ASHILAEDIRM-----LQFHVTTMTDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGN 314
Query: 251 FIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-- 308
+ K FS+R+VIT D ++++GVP IAQ +T+ E V NI++LQ+LV N
Sbjct: 315 LMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPENVTQFNIDHLQKLVQNGTLYP 374
Query: 309 ---LTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
+ LR K L+ G VV R +++ D V NR PT HK S+ V
Sbjct: 375 GAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDYVIFNRQPTLHKMSMMCHRV 434
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
V T ++N + P +ADFDGD ++L PQS+ KAE+ +L V + +++
Sbjct: 435 KVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPV 494
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L ++ M ++ FL++A L M+ + +P+PA+ K + WT Q+
Sbjct: 495 MSIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGRMPKPAIYKPQ--RLWTGKQLF 552
Query: 481 QSVLPPGFDSC---------------------GD-RYLIKKSEVLKGDFDRDTIPSVINE 518
++ PG +C GD + ++ +++ G + T+ S
Sbjct: 553 TLII-PGRVNCIRTHSTHPEDEDGGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGS 611
Query: 519 IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----Q 574
++ + E E+V FF+++Q ++ L +G ++ + D +A I + I
Sbjct: 612 LIHIVALEHHHEQVSMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITKAKD 671
Query: 575 ALYSLL-----YHRMSTQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLID 621
A++ ++ Y T + EN + + + + K + ++
Sbjct: 672 AVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVV 731
Query: 622 SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKG 681
+ S + + Q +G Q + GK HF + +Y G ++
Sbjct: 732 AGSKGSRINISQVIACVG-QQNVEGKRIPFGFRHRTLPHF-----IQDDYGPESRGFVEN 785
Query: 682 CFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSN 741
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN N
Sbjct: 786 SYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQI-N 844
Query: 742 SIIQFDYA 749
+IQ Y
Sbjct: 845 QLIQLRYG 852
>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
Length = 1391
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 199/758 (26%), Positives = 313/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ S N I + + G E + L L L GFS+ + D + + L
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLL---- 710
Query: 571 KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK-----FILK----------SST 615
+A Y LL +E ++ ++ A+ ILK S+
Sbjct: 711 ---KAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPM 667
L L S S ++ + F+ + Q + G HFE+ +
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis
lupus familiaris]
Length = 1390
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|157126795|ref|XP_001660950.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108873160|gb|EAT37385.1| AAEL010617-PA [Aedes aegypti]
Length = 1298
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 178/668 (26%), Positives = 283/668 (42%), Gaps = 95/668 (14%)
Query: 116 EVKEMLKRIPEETRKKLAGKG--YFPQDGYILEYLPVPPNCLSVPDISD-GVSTMSSDLS 172
EV ++ K IP+ L P D I+ + VPP C+ +S+ T DL+
Sbjct: 224 EVLDLFKNIPKSDIPLLGMTSPESNPAD-LIVTRVFVPPVCIRPSVVSEVKAGTTEDDLT 282
Query: 173 IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ + +L I + SG E + + + LQL Y E+ G S
Sbjct: 283 MKQSEILLISDVIAKHMMSGG-KIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTR 341
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G+ Q K + R K FS+R+VI+ D ++++GVP +A+ +TF ER
Sbjct: 342 GIVQ----RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPER 397
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFL------------RPGQVVHR 338
VN NIN +++L+ N T ++Y ++GS +L + G +V R
Sbjct: 398 VNTANINKMRQLIKNG---TEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVER 454
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+MDGD V NR P+ HK S+ V T + N C P +ADFDGD ++L PQ+
Sbjct: 455 HLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQT 514
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL 457
A+AE L L + L++ NG L + D + ++ +K FL + QLA L
Sbjct: 515 EEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTREQVMQLAACML 574
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDR 509
S LP+PA+ K R WT QI +L P D + L K
Sbjct: 575 SGPDANMEIDLPKPAIIKPR--KMWTGKQIFSLILKPNKDCIVNANLSTK---------- 622
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
D PS + EK + L +G+S E + K
Sbjct: 623 DVTPS------RKLLQEK-----------------QKLLENGYSRCDEYIAEMKKGTLQC 659
Query: 570 QKEI---QALYSLLYHRMSTQNELVDLQI--ENHIRHVKMLVAKFILKSSTLGYLIDSKS 624
Q Q L +++ +S+ EL E H + +++A+ K S +
Sbjct: 660 QPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNIN------- 712
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+S+++ G Q + GK + HFE+ + P A+ G ++ F+
Sbjct: 713 ---ISQMIACVG----QQAINGKRVPNGFEDRALPHFEKFSKI----PAAR-GFVQNSFY 760
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H+++ RE +V ++ +E G L + L+ L D+V+ YDGTVRN ++
Sbjct: 761 SGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIG-EVV 819
Query: 745 QFDYAVNA 752
+F Y +
Sbjct: 820 EFTYGADG 827
>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
Length = 1387
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 201/709 (28%), Positives = 304/709 (42%), Gaps = 102/709 (14%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISDGVS-TMSSD 170
EV + +RIP+E + L PQ G+ IL +PVPP C+ +SD S T D
Sbjct: 222 EVLHLFERIPDEDVQFLLMN---PQHGHPKDMILTRVPVPPVCIRPSVVSDLKSGTNEDD 278
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND-LQLAVGQYL--EVRGTA------K 221
L++ + + V I++ G + S +E+ D LQL Y+ E+ G K
Sbjct: 279 LTMKLTEIVFLNDVIVKHRLIGANS--SLILEAWDFLQLQSALYINGELSGIPLNMQPKK 336
Query: 222 SSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEI 281
SSR + R Q + R K FS R+VI+ D R++++GVP +
Sbjct: 337 SSRGIIQRLKGKQG----------RFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPELV 386
Query: 282 AQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LR 331
A+ +TF RVN NI +++LV N S G + L+ G++ + L+
Sbjct: 387 AKILTFPTRVNEANIELMRKLVRNGADVHPGANYLQEKSSGMRKF-LKYGNRENLARNLK 445
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G ++ R +MD D V NR P+ HK S+ + T + N +C P +ADFDGD +
Sbjct: 446 LGDLIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILPHRTFRFNECVCTPYNADFDGDEM 505
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQ 450
+L PQ+ A+AE L + L++ NG L + D + ++ K F D+A T
Sbjct: 506 NLHLPQTEEARAEAWILMGNKYNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTC 565
Query: 451 QLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDR 494
Q+ L+ LP P + K +A W+ QI +L P + G
Sbjct: 566 QMVASMLAGDEVNMVIKLPPPCIQKP--AALWSGKQIFSLILRPNPGDRIKVNLRTKGKE 623
Query: 495 Y--------------LIKKSEVLKGDFDRDTI--PSVINEIVTSIFFEKGPEEVLEFFDS 538
Y L++ SEVL G D+ TI S IN I + + G + ++
Sbjct: 624 YSKKNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKIN-IFYVLLRDYGEDFAIQAMWK 682
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNELVDLQIE 596
L + + GFS+ + D + K L Q + + YS Y R+ T +L L
Sbjct: 683 LCRVASYYMMNRGFSIGIGDVTPGKTLLKEKQILLDSGYSKCDEYIRLLTIGQLPCLPGC 742
Query: 597 NH--------------IRHVKMLVAKFILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGL 640
N IR V K L S L+ SKS S S + Q +G
Sbjct: 743 NEEESLESKILKELSGIRDQAGEVCKKELHPSN-SPLVMSKSGSKGSYINISQMIACVGQ 801
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK + HF+R P AK G + F+ GL P E H++ R
Sbjct: 802 QALN-GKRVPNGFEDRSLPHFKR----HSKIPAAK-GFVSNSFYSGLTPTEFFFHTMGGR 855
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E +V ++ +E G + + L+ L D+ YD TVRN + IIQF Y
Sbjct: 856 EGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRN-SAGEIIQFVYG 903
>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis
catus]
Length = 1390
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 177/727 (24%), Positives = 306/727 (42%), Gaps = 80/727 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L +YA + D +++L S V E+ KRI +E L Y
Sbjct: 184 YQP-RIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARP 242
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
+ I+ LPVPP + + G + DL+ + V ++ R+ +SG +
Sbjct: 243 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGA----AAH 298
Query: 201 VESND---LQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLF 251
V + D LQ V ++ R KS R + + + Q K ++R
Sbjct: 299 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQ----RLKGKEGRVRGNL 351
Query: 252 IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC--- 308
+ K FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV
Sbjct: 352 MGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYP 411
Query: 309 ---LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
D LR K L+ G V R + DGD + NR PT HK S+ V
Sbjct: 412 GAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRV 471
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
+ T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ +
Sbjct: 472 RILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 531
Query: 425 LQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQIL 480
+ + D L +++ K+ FL++ L MF + +P+PA+ K R WT QI
Sbjct: 532 MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIF 589
Query: 481 QSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEI 519
++P + S GD + +++ E++ G + ++ + +
Sbjct: 590 SLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSL 649
Query: 520 VTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSL 579
V + E G + F+ ++Q ++ L +G S+ + D KA +IQ I+
Sbjct: 650 VHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQD 709
Query: 580 LYHRM--STQNEL-------VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDS 622
+ + + NEL + EN + + K + + + ++ +
Sbjct: 710 VIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVA 769
Query: 623 KSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGC 682
S + + Q +G Q + GK HF + +Y G ++
Sbjct: 770 GSKGSKINISQVIAVVG-QQNVEGKRIPFGFKHRTLPHF-----IKDDYGPESRGFVENS 823
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNS 742
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YD TVRN N
Sbjct: 824 YLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQ 882
Query: 743 IIQFDYA 749
++Q Y
Sbjct: 883 VVQLRYG 889
Score = 43.5 bits (101), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNM-T 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H I+++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFITKI 101
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 174/723 (24%), Positives = 301/723 (41%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y PS I L + A + D +++ S V E+ K I +E + Y
Sbjct: 183 YQPS-IRRAGLDLTAEWKHVNEDSQEKKIALSAERVWEIFKHITDEECFIMGMDPKYARP 241
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + + E++R+ ++G + S+
Sbjct: 242 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELLRNEQAGAAAHVLSE 301
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 302 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGKR 354
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LCL 309
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 355 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKY 414
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 415 IVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 474
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 475 WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 534
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ FL+K + M +P+PA+ K + WT Q+ ++
Sbjct: 535 QDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILKPK--PLWTGKQVFSLII 592
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 593 PGNVNMIRTHSTHPDDEDDGPYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 652
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
E G E F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 653 MLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 712
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ S S
Sbjct: 713 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 772
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 773 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 826
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 827 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQL 885
Query: 747 DYA 749
Y
Sbjct: 886 RYG 888
>gi|393235145|gb|EJD42702.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1404
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 182/704 (25%), Positives = 300/704 (42%), Gaps = 87/704 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+V ++ KRI +E + L K + + Y+ +Y+ VPP C+ P ++ + DL++
Sbjct: 218 KVLDLFKRISDEDCELLGMKPVHGRPEHYLWQYISVPPVCIR-PSVAQDGGSNEDDLTVK 276
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
+ + V I + + G P + E + LQ++V Y+ E+ G R G
Sbjct: 277 LAEIVFSNTLIKQGIQKGAPIQQLME-QWEFLQISVAVYINSEMPGLQNQPNQRPIR-GF 334
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
Q K + R K FS R+VI+ D R++E+ VP +A+ +T+ ERV
Sbjct: 335 CQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQRVAKILTYPERVT 390
Query: 293 VHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMD 342
N+ L+ V N + S+G + L+ G++ LR G VV R ++D
Sbjct: 391 SSNLEKLRLAVRNGPDVHPGANYVVAASNGFKKF-LKFGNRDDVADKLRVGDVVERHVID 449
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD + NR P+ HK S+ V T ++N +C P +ADFDGD ++L PQ+ A+
Sbjct: 450 GDIILFNRQPSLHKLSIMCHRAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 509
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALS-- 458
AE +L V L++ NG + D + + ++ +K ++ FTQ F +
Sbjct: 510 AEASQLMWVVNNLVTPRNGEPVIAAIQDFITASYLLCRKDRFYTRAQFTQICGYFGDALV 569
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPG---------------FD------------ 489
LP P + K + WT QI +L P F+
Sbjct: 570 HIELPPPVILKP--ARLWTGKQIFSCLLRPNKSTNVLVNVETKCNQFEKPDPKHYPSWMT 627
Query: 490 -----SCGDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPL 542
S D +L I SE++ G D+ TI S + + +I + GP+E L L
Sbjct: 628 PENDLSLNDGWLVIVNSEIMSGTLDKATIGSGKKKSVFGAIMKDYGPQEAALAMGRLAKL 687
Query: 543 LMENLFADGFSVSLEDFS-----------LSKAALWNIQKEI-QALYSLLYHRMS-TQNE 589
L GFS+ + D + L A QK I QA L ++ ++
Sbjct: 688 CARFLANFGFSIGINDVTPGPLLTGEKQRLVTEAYEKCQKLIDQAKRGQLQNKPGCNTDQ 747
Query: 590 LVDLQIENHIRHVKMLVAKFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
++ I + + V+ V K +K + + S +V V Q +G Q+
Sbjct: 748 TLEALISDILSDVRGQVGKICMKELSRHNAPWTMATCGSKGSVDNVAQMVACVGQQIIG- 806
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G+ + HFE+ P +K G + F+ GL E + H+IS RE +V
Sbjct: 807 GRRVPDGFQDRSLPHFEK----KSKDPASK-GFVSNSFYTGLTATEFLLHAISGREGLVD 861
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ +E G + + LM L D+ YD +VRN ++QF Y
Sbjct: 862 TAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSVG-GVVQFYYG 904
>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Ailuropoda melanoleuca]
Length = 1390
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
imbricatum]
Length = 999
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 159/653 (24%), Positives = 283/653 (43%), Gaps = 118/653 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++LV N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCVVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNITLWVPDWDGVIPQPAIVKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q +
Sbjct: 522 FAPAGDSGLFVADGQLMFGMFNKKSVGTGSNSVIHTIFNEFGHETAMAFFNGAQTAVNYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI----------------------------QALYS 578
L +GFS+ + D + I+ E+ + S
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 641
Query: 579 LLYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQS 694
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ F +TL HF + +Y A G ++ + GL P E H+
Sbjct: 695 VEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHA 742
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 743 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 176/749 (23%), Positives = 308/749 (41%), Gaps = 89/749 (11%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEML 121
T++ K +GH G Y PS I L + A + ++ +++ S V E+L
Sbjct: 162 TADGAKKQGHGGCGH-----YQPS-IRRTGLDLMAEWKDVNDENQEKKIQVSAERVYEIL 215
Query: 122 KRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
K I +E L F + D I+ LPVPP + + G + DL+ + +
Sbjct: 216 KHITDEECFVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIK 275
Query: 181 KQVEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
E+ ++ +G F + ND+ G ++ + K + + AR
Sbjct: 276 ANNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMP---GMPKAMQKSGKPLKAIKAR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
K ++R + K FS+R+VIT D R++++GVP +AQ +TF E
Sbjct: 333 L----------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPE 382
Query: 290 RVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMD 342
V NI+ +QELV D LR K L+ G V R + D
Sbjct: 383 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRD 442
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
D V NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +
Sbjct: 443 DDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETR 502
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--- 458
AE+ + +Q+++ + + D L +++ M K+ F++K L MF +
Sbjct: 503 AEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPTWDG 562
Query: 459 PLPRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLI 497
+P+PA+ K + WT QI ++P + S GD + ++
Sbjct: 563 KMPQPAILKPK--PLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMV 620
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ +++ G + T+ + ++ +F E G E F+ ++Q ++ L +G S+ +
Sbjct: 621 EHGDLIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIG 680
Query: 558 DFSLSKAALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV------ 602
D IQ+ I+ + H M T + EN + +
Sbjct: 681 DTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARD 740
Query: 603 --KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
K + + + L ++ S S + + Q +G Q + GK + H
Sbjct: 741 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPH 799
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 800 F-----IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRL 854
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + V++ YDGTVRN +IQ Y
Sbjct: 855 IKAMESVMVNYDGTVRNSVGQ-LIQLRYG 882
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+++ I +A L +P G+ +C++C +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGNM-T 74
Query: 67 KCEGHFGYIELPIPIYHPSHISE 89
+C GHFG+I+L P++H I++
Sbjct: 75 ECPGHFGHIDLAKPVFHIGFITK 97
>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1390
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + K+IP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKQIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P DS CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDSPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMTGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLSRLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 171/711 (24%), Positives = 291/711 (40%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++++ S E+LK I +E L F + D I+ LPVPP +
Sbjct: 197 HVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPA 256
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E++R+ +SG F + ND+
Sbjct: 257 VIMYGSAKNQDDLTHKLADIIKSNNELVRNEQSGAAAHVISENIKMLQFHVATLVDNDMP 316
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 317 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 363
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +Q LV D LR
Sbjct: 364 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERIDLR 423
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 424 FHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 483
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 484 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 543
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K L MF S +P+P + K + WT Q+ ++P +
Sbjct: 544 RDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPK--PLWTGKQLFSLIIPGNVNMIRTHST 601
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G E F
Sbjct: 602 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF 661
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRMS---T 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 662 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 721
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 722 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 781
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 782 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 835
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 885
>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1459
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 184/716 (25%), Positives = 303/716 (42%), Gaps = 132/716 (18%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------------------VRGTAKSSRDVDARFGVSQDPNSTT 240
+ + LQ+AV Y+ +RG + + RF
Sbjct: 314 EQWDYLQMAVAMYINSDSVNPALMPGGTGGGKTKPIRGFCQRLKGKQGRF---------- 363
Query: 241 KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ 300
R K FS R+VI+ D ++E+ VP +A+ +T+ ERV +N + LQ
Sbjct: 364 -------RGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPERVTRYNKHKLQ 416
Query: 301 ELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFI 348
+L+ N + ++Y L++ LR G VV R I DGD V
Sbjct: 417 QLIINGPNV---HPGANYMLKKNEDARRNLRYGDRIKLAKNIQIGDVVERHIEDGDVVLF 473
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L
Sbjct: 474 NRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINL 533
Query: 409 FSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPR 462
V+ LL+ +G + D + S + K F D+A FTQ L+M A + LP
Sbjct: 534 MGVKNNLLTPKSGEPIISATQDFITGSYLISHKDSFFDRATFTQLLSMMADANMQFDLPP 593
Query: 463 PALSKARCSARWTALQILQSVLPP--------GFDSCGDRYL------------------ 496
PA+ K C WT Q+ ++ P D+ YL
Sbjct: 594 PAIIKP-CYL-WTGKQVFSLLIRPNKKSPVIINLDAKNKVYLPPKNKSFPNEMSSNDGYV 651
Query: 497 -IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
I+ SE+L G D+ + + + +I + GP E + + + L L GFS+
Sbjct: 652 IIRGSEILCGVMDKSVLGDGKKHSVFYTILRDFGPYEAAKAMNRMAKLCARYLGNRGFSI 711
Query: 555 SLEDFSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQI-------- 595
+ D + K ++ ++ Y+ L+ R + TQ NE L+
Sbjct: 712 GINDVTPGKELKAKKEEMVEIAYAKCDELIDLFKRGELETQPGCNEEQTLEAKIGGLLSK 771
Query: 596 ------ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
E IR + L A I+ +T G + + S + VV Q G ++ D F
Sbjct: 772 VREEVGEVCIRELDNLNAPLIM--ATCGSKGSNLNVSQMVAVVGQQIISGNRVPD--GFQ 827
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
++L HF + + P +K G ++ FF GL P E + H+IS RE +V ++
Sbjct: 828 DRSL-----PHFAK----NSKTPQSK-GFVRSSFFSGLSPPEFLFHAISGREGLVDTAVK 877
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+E G + + LM L D+ YD TVR SN ++QF Y + ++ +PV
Sbjct: 878 TAETGYMSRRLMKSLEDLSCQYDNTVR-TSSNGVVQFTYGGDGLDPLNMEGNAQPV 932
>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
Length = 999
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 163/640 (25%), Positives = 283/640 (44%), Gaps = 92/640 (14%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISKLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKP--GPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWFLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IENHIRHVK 603
+ + D + I+ E+ + + R++ DL+ E+ +
Sbjct: 589 IGIGDTVPDIGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFESKV-SAA 646
Query: 604 MLVAKFILKSSTLGYLIDSK---------SDSAVSKVVQQAGFLGLQLSDRGK-----FY 649
+ A+ ++T L DS S + + Q +G Q S GK F
Sbjct: 647 LNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFK 705
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+TL HF + +Y A G ++ + GL P E H+++ RE ++ ++
Sbjct: 706 YRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 755
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 756 TAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 217/868 (25%), Positives = 362/868 (41%), Gaps = 148/868 (17%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ S + +P LG+ KC +CG
Sbjct: 7 EKIIKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCG 66
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGV---------- 106
+ G C GHFG+IEL P+ H + + + A +L+IK + +
Sbjct: 67 NTLNG-CPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAI 125
Query: 107 -------AQRLLSSC---------C--------------------EVKEMLKRI-PEETR 129
A+RL+ C E KE + R+ P + R
Sbjct: 126 KDRWPSAARRLVEYIKKNAMKNMECPHCGEKQFKIKLEKPYNFYEERKEGVIRLTPSDIR 185
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P+ + IL LPVPP + P I+ + D L
Sbjct: 186 ERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIR-PSITIESGIRAEDDLTHKLV 244
Query: 178 KVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQ 234
+++ E ++ S +G P +++ + LQ V Y E+ G + S
Sbjct: 245 DIIRINERLKESIDAGAPQLIIEDL-WDLLQYHVSTYFDNEIPGIPPAKHR-------SG 296
Query: 235 DPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
P T L+ F SG FS+R+VI+ D ++E+GVP IA+ +T ER
Sbjct: 297 RPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPVAIAKTLTVPER 356
Query: 291 VNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIM 341
V NI +++ V N + DG +++ + + L PG +V R ++
Sbjct: 357 VTKMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLI 416
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
DGD V NR P+ H+ S+ V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 417 DGDIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEA 476
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDAL---LSLKVMFKKYFLDKAFTQQLAMFALS 458
AE E+ V + +++ G + A D + L V ++ T +
Sbjct: 477 IAEAKEIMLVHRNIITPRYGGPIMGGAQDYISGAYLLTVKTTLLTREEVTTILGVTDFMG 536
Query: 459 PLPRPALSKARCSARWTALQILQSVLP------------PGFDSCG------DRYL-IKK 499
+ PA+ R +T QI+ LP GF +C D Y+ IK
Sbjct: 537 EIGEPAILAPR--EYYTGKQIVSLFLPKDFNFHGQANISKGFRACKNEVCPHDSYIVIKN 594
Query: 500 SEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+L+G D+ I + E I+ + E G E D++ L + + GF+++L+D
Sbjct: 595 GILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKLFIRFIELRGFTMTLDD 654
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI-------RHV 602
++ A I ++I+ Y + + NE + +E+HI R V
Sbjct: 655 VTIPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKV 714
Query: 603 KMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A K++ + + + + + + + Q LG Q S RG+ + + HF
Sbjct: 715 AGDIATKYLDPFNNVYIMAVTGARGSELNITQMTAMLG-QQSVRGERIKRGYMTRTLPHF 773
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ P D++ P A+ G + F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 774 K---PGDIS-PDAR-GFVHNSFTRGLTPIEMFFHAAGGREGLVDTAVKTSQSGYMQRRLI 828
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ + YDGTVR++ +I+ Y
Sbjct: 829 NALSDLRVEYDGTVRSLYG-EVIELAYG 855
>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1403
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 183/706 (25%), Positives = 301/706 (42%), Gaps = 93/706 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ +RI +E + L G P+ G +I +YL VPP C+ DG S D+
Sbjct: 218 KVLDLFRRISDEDCELL---GLRPEWGRPEQFIWQYLSVPPVCIRPSVAQDGASN-EDDI 273
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ + + V I + G P + E + LQL+V Y+ E+ G R
Sbjct: 274 TVKLTEIVFTNALIKQGLSKGAPTPQFME-QWEFLQLSVAMYINSELPGVPSQMGQKPIR 332
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
V + K + R K FS R+VI+ D R++E+ VP +A+ +T+ E
Sbjct: 333 GFVQR-----LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPE 387
Query: 290 RVNVHNINYLQELVDNKLCL-----TYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMD 342
RV +HNI L++ + N + + G + L+ G++ L G +V R ++D
Sbjct: 388 RVTMHNIETLRQAIRNGPDVHPGANYVARGETKKFLKFGNRQAIADNLAIGDIVERHVID 447
Query: 343 GDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAK 402
GD V NR P+ HK S+ + T ++N +CGP +ADFDGD ++L PQ+ A+
Sbjct: 448 GDIVLFNRQPSLHKLSIMCHRAKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEAR 507
Query: 403 AEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSPL 460
E LEL SV+ L++ NG + D + + ++ +K +F + FTQ + L
Sbjct: 508 TEALELMSVKHNLVTPRNGEPVISAIQDFITASFLISRKDRFFDRREFTQICCYLGDADL 567
Query: 461 ----PRPALSKARCSARWTALQILQSVLPPGFDS---------C---------------- 491
P P + K WT QI ++ P S C
Sbjct: 568 HIDIPPPTIWKP--VQLWTGKQIFNVLMRPNKQSKIFINVESKCQKWEEAKPQNFPPRIT 625
Query: 492 -------GDRYL-IKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPL 542
D +L + SE++ G D+ T+ S + I I + GP E L L
Sbjct: 626 LQPDLSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAIAMGRLAKL 685
Query: 543 LMENLFADGFSVSLEDFSLSKAALWNIQKE--IQALYS-------------LLYHRMSTQ 587
L GFS+ + D + + + QK+ ++ Y+ L Q
Sbjct: 686 CARYLANYGFSLGIND--VIPGPVLSSQKDVLVEKAYADCEDLIALAKKGKLENKPGCNQ 743
Query: 588 NELVDLQIENHIRHVKMLVAKFILK--SSTLGYLIDSK--SDSAVSKVVQQAGFLGLQLS 643
+ ++ I + + V+ V + +K S LI + S +V V Q +G Q+
Sbjct: 744 EQTLEAMISSVLSKVREEVGQICMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQII 803
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
G + HF P P +K G ++ F+ GL E + H+IS RE +
Sbjct: 804 -AGHRVPNGFQDRSLPHF----PKKSKTPPSK-GFVRNSFYSGLVATEFLFHAISGREGL 857
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
V ++ +E G + + LM L D+ YD +VRN + ++QF Y
Sbjct: 858 VDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRN-STGGVVQFQYG 902
Score = 40.4 bits (93), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 28/102 (27%)
Query: 29 TASISDCSISHASQLANPFLGLPLEFGK-------------CESCGTSEPGKCEGHFGYI 75
T IS+ ++H L P LP++ G CE+CG S C GH+ YI
Sbjct: 26 TVKISEFEVTH-RDLYTPTERLPVKHGVLDRRLGTTEKSAFCETCGQSSVN-CVGHYAYI 83
Query: 76 ELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEV 117
+L +P++ HI K T+ G+ Q + SC V
Sbjct: 84 KLCVPVF---HIGYFKHTI----------GILQSICKSCARV 112
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 178/741 (24%), Positives = 307/741 (41%), Gaps = 77/741 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y P ++ L + A + D +++ + E+LK
Sbjct: 165 DPNKKPGHGGCGR-----YQP-NLRRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKH 218
Query: 124 IPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L F + D I+ LPVPP + + G + DL+ + +
Sbjct: 219 ITDEESFILGMDPKFARPDWMIVTVLPVPPLAVRPAVVMYGSAKNQDDLTHKLSDIIKSN 278
Query: 183 VEIIRSSRSGTP-NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTK 241
E++R+ ++G + S+ ++ +A ++ G K+ + S P K
Sbjct: 279 NELLRNEQAGAATHVISENIKMLQFHVATLVDNDMPGMPKAMQK-------SGKPLKAIK 331
Query: 242 AWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNIN 297
A L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI+
Sbjct: 332 ARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNID 391
Query: 298 YLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINR 350
+QELV D LR K L+ G V R I DGD V NR
Sbjct: 392 KMQELVRRGNTRYPGAKYIVRDNGDRIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 451
Query: 351 PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 410
PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 511
Query: 411 VEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALS 466
+Q+++ + + D L +++ M K+ F++K + MF S +P+P +
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCIL 571
Query: 467 KARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKG 505
K + WT QI ++P + S GD + +++ E++ G
Sbjct: 572 KPK--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMG 629
Query: 506 DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAA 565
+ T+ + ++ E G E F+ ++Q ++ L +G S+ + D
Sbjct: 630 ILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT 689
Query: 566 LWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KMLVAK 608
IQ I+ + H M T + EN + + K
Sbjct: 690 YMEIQSSIRKAKEDVIEVITKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKK 749
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
+ + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 750 SLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IK 803
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V+
Sbjct: 804 DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 863
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN +IQ Y
Sbjct: 864 VHYDGTVRNSVGQ-LIQLRYG 883
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 170/711 (23%), Positives = 292/711 (41%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++++ + E+LK I +E L F + D I+ LPVPP +
Sbjct: 197 HVNEDSQEKKIVLTAERAWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPA 256
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E++R+ +SG F + + ND+
Sbjct: 257 VIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENIKMLQFHAATLVDNDMP 316
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 317 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 363
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +Q LV D LR
Sbjct: 364 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERIDLR 423
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 424 FHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 483
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 484 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 543
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K L MF S +P+P + K + WT Q+ ++P +
Sbjct: 544 RDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPK--PMWTGKQLFSLIIPGNVNMIRTHST 601
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G E F
Sbjct: 602 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF 661
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRM---ST 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 662 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 721
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 722 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 781
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 782 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 835
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 885
>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
Length = 1375
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 179 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 234
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 235 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 294
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 295 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 343
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 344 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGA 403
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 404 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 461
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 462 LAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 521
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 522 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTILKP--VTL 579
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 580 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 639
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 640 LGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 699
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 700 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 759
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 760 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 812
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 813 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 867
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 868 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 904
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 285/631 (45%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + + G+P E+E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLAEVLKTNISVQKLEMDGSPQHVISEIETL-LQFHVATYMDNDIAGQPQAMQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L ELV N D LR + G L+ G V
Sbjct: 186 TLTYPEIVTPYNIHRLTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L ++ M + F++ + Q + M
Sbjct: 306 QSEETRAELSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVE--YDQVMNMC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-------DRYLIK 498
P +P PA+ K + WT Q+L +P G FD LI
Sbjct: 364 FWIPDWDGVIPEPAILKPK--PLWTGKQLLSLCIPKGIHLQRFDGGASWSSPTDSGMLII 421
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
EVL G D+ T+ + ++ ++ EKG + F ++Q ++ L +GFS+ + D
Sbjct: 422 DGEVLFGVVDKKTVGATAGGLIHTVMREKGSAVCAKLFGNMQKVVNFWLLHNGFSIGIGD 481
Query: 559 FSLSKAALWNI-------QKEIQALYSLLYH------------RMSTQNELVDLQIENHI 599
+ + I ++++Q + LL H R S +N + ++ N
Sbjct: 482 TIADASTMREITNTISEAKEKVQEII-LLAHLNTLEPEPGMTLRESFENNVS--RVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S + + Q + +G Q+ + G+ +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVVCGSKGSFINISQMSACVGQQIVE-GRRIPFGFADRTL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YD T RN + +IQF Y
Sbjct: 653 RLVKALEDIMVHYDSTARNSLGD-VIQFVYG 682
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 216/868 (24%), Positives = 363/868 (41%), Gaps = 148/868 (17%)
Query: 11 EGQIVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCG 61
E I GI+FG+ + EI S++ S + +P LG+ KC +CG
Sbjct: 3 EKIIKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCG 62
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGV---------- 106
+ G C GHFG+IEL P+ H + + + A +L+IK + +
Sbjct: 63 NTLNG-CPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAI 121
Query: 107 -------AQRLLSSC---------C--------------------EVKEMLKRI-PEETR 129
A+RL+ C E KE + R+ P + R
Sbjct: 122 KDRWPSAARRLVEYIKKNAMKNMECPHCGEKQFKIKLEKPYNFYEERKEGVIRLTPSDIR 181
Query: 130 KKLAGK--------GYFPQ----DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
++L GY P+ + IL LPVPP + P I+ + D L
Sbjct: 182 ERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIR-PSITIESGIRAEDDLTHKLV 240
Query: 178 KVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQ 234
+++ E ++ S +G P +++ + LQ V Y E+ G + S
Sbjct: 241 DIIRINERLKESIDAGAPQLIIEDL-WDLLQYHVSTYFDNEIPGIPPAKHR-------SG 292
Query: 235 DPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
P T L+ F SG FS+R+VI+ D ++E+GVP IA+ +T ER
Sbjct: 293 RPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPVAIAKTLTVPER 352
Query: 291 VNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKGHTFLRPGQVVHRRIM 341
V NI +++ V N + DG +++ + + L PG +V R ++
Sbjct: 353 VTKMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLI 412
Query: 342 DGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 401
DGD V NR P+ H+ S+ V V T ++N L+C P +ADFDGD ++L PQS A
Sbjct: 413 DGDIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEA 472
Query: 402 KAEVLELFSVEKQLLSSHNGNLNLQLATDAL---LSLKVMFKKYFLDKAFTQQLAMFALS 458
AE E+ V + +++ G + A D + L V ++ T +
Sbjct: 473 IAEAKEIMLVHRNIITPRYGGPIMGGAQDYISGAYLLTVKTTLLTREEVTTILGVTDFMG 532
Query: 459 PLPRPALSKARCSARWTALQILQSVLP------------PGFDSCG------DRYLIKKS 500
+ PA+ R +T QI+ LP GF +C D Y++ K+
Sbjct: 533 EIGEPAILAPR--EYYTGKQIVSLFLPKDFNFHGQANISKGFRACKNEVCPHDSYIVIKN 590
Query: 501 EV-LKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+ L+G D+ I + E I+ + E G E D++ L + + GF+++L+D
Sbjct: 591 GILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKLFIRFIELRGFTMTLDD 650
Query: 559 FSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDLQIENHI-------RHV 602
++ A I ++I+ Y + + NE + +E+HI R V
Sbjct: 651 VTIPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKV 710
Query: 603 KMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
+A K++ + + + + + + + Q LG Q S RG+ + + HF
Sbjct: 711 AGDIATKYLDPFNNVYIMAVTGARGSELNITQMTAMLG-QQSVRGERIKRGYMTRTLPHF 769
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
+ P D++ P A+ G + F GL P E H+ RE +V ++ S+ G + + L+
Sbjct: 770 K---PGDIS-PDAR-GFVHNSFTRGLTPIEMFFHAAGGREGLVDTAVKTSQSGYMQRRLI 824
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ + YDGTVR++ +I+ Y
Sbjct: 825 NALSDLRVEYDGTVRSLYG-EVIELAYG 851
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 196/783 (25%), Positives = 327/783 (41%), Gaps = 84/783 (10%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 130 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRTGLELYAEWKHVNEDSQEKKILL 183
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 184 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 243
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 244 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 299
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 300 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352
Query: 283 QRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 353 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 412
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 413 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 472
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 473 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 532
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 533 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 589
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 590 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLI 649
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 650 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 709
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 710 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 769
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 770 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 829
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNP 776
L+ + V++ YD TVRN N ++Q Y + AGE V LA SN
Sbjct: 830 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL-------AGESVEFQNLATLKPSNK 881
Query: 777 AYK 779
A++
Sbjct: 882 AFE 884
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 199/851 (23%), Positives = 362/851 (42%), Gaps = 129/851 (15%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL V Y+ + G++ V G Q K + R
Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +T+ E+V +N + LQELV N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVNGPNVHPG 429
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKKNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCSARWTAL 477
+ D + S + K F D+A TQ L+M + +P PA+ K WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGVEQFDIPPPAIMKP--YYLWTGK 607
Query: 478 QILQSVLPPGFDSC--------------------------GDRY-LIKKSEVLKGDFDRD 510
Q+ ++ P +S D + +I+ S +L G D+
Sbjct: 608 QVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPSEMSQNDGFVIIRGSNILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + + ++
Sbjct: 668 VLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGINDVTPAD----DL 723
Query: 570 QKEIQALYSLLYHR------------MSTQ-----NELVDLQIENHIRHVKMLVAKFILK 612
+++ + L + Y + + TQ + ++ +I + V+ V +
Sbjct: 724 KQKKEELVEIAYRKCDELITEFNRGELETQPGCNEEQTLEAKIGGFLSKVREEVGDVCIN 783
Query: 613 S----------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+T G + + S + VV Q G ++ D F ++L HF
Sbjct: 784 ELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF- 835
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 836 ---PKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 891
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
L D+ YD TVR +N I+QF Y + + +PV + AY
Sbjct: 892 SLEDLSCQYDNTVR-TSANGIVQFTYGGDGLDPLEMEGNAQPVNF---NRSWDHAYNITF 947
Query: 783 DSSPSSNNSWELMK---EILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQ 839
D+ + +MK E+L P++ R+I Y N + +++A Y+ +
Sbjct: 948 DNKDEGLLPYAIMKTANEVL--------RPLEERLIRYDNSGCLVKAEDKDKAEYVDQYD 999
Query: 840 LKR---------VSLKDAAVEFLIEYKK-PEIISDDEGLVGHIHLNKILLEDLRISMHDI 889
+R ++LK A+ L + E++ E ++ ++ ++ + ++++IS+ +
Sbjct: 1000 AERDFYRSLREYINLKATALANLRRSRGMSELLEAPEKILEGVNPDENVPDNIKISVSQL 1059
Query: 890 LPKCQETLKSF 900
++++K F
Sbjct: 1060 YRISEKSVKKF 1070
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 188/751 (25%), Positives = 315/751 (41%), Gaps = 75/751 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG ++ G + K +GH G Y P I L +YA + D +++L
Sbjct: 139 KFGVEQTEGDEDIQKEKGHGGCGR-----YQP-RIRRTGLELYAEWKHVNEDSQEKKILL 192
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L F + + I+ LPVPP + + G + DL
Sbjct: 193 SPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDL 252
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 253 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 308
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 309 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 361
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 362 ANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 421
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 422 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 481
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 482 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 541
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 542 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 598
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 599 PGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLI 658
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 659 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 718
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 719 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 778
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 779 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 838
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ + V++ YD TVRN N ++Q Y
Sbjct: 839 RLIKSMESVMVKYDATVRNSI-NQVVQLRYG 868
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
Length = 999
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 164/638 (25%), Positives = 282/638 (44%), Gaps = 88/638 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMVSMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIENHIRHVKMLVAKFI- 610
+ + D + I+ E+ S + + + EL L N + V+ +
Sbjct: 589 IGIGDTVPDIGTVEKIKSEVDKKKSEVERITQSAVAEELEALPGMNVRETFESKVSAALN 648
Query: 611 -----LKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSK 651
++T L D + S + + Q +G Q S GK F +
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVG-QQSVEGKRIPFGFKYR 707
Query: 652 TLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
TL HF + +Y A G ++ + GL P E H+++ RE ++ ++ +
Sbjct: 708 TL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 757
Query: 712 EPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 758 ETGYIQRRLVKALEEVTVKYDATVRDSRGN-IVQFIYG 794
>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 989
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 164/647 (25%), Positives = 285/647 (44%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++ V N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIVKPR--PRWTGKQMVSMVLPPALNLVRIDGKASLPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLIDSK---------SDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ S+T L DS S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 1003
Score = 166 bits (421), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 160/655 (24%), Positives = 284/655 (43%), Gaps = 120/655 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEV------RGTAKSS 223
DL+ + + ++IR + G P+ ++E+++ LQ V Y++ + KS
Sbjct: 188 DLTFKLGDIIRANQDLIRINAEGAPDHIAKELQAL-LQYHVATYMDNDIANLDKAQHKSG 246
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + + +K ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 247 RPI-------KSIRARSKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 299
Query: 284 RITFEERVNVHNINYLQELV-----------------DNKLCLTYSDGSSSYSLREGSKG 326
+T+ E V NI+ L+ELV + ++ L Y ++ +L+ G K
Sbjct: 300 TLTYPETVTRFNISRLKELVTRGPEMHPGARYIIRENNERIDLRYHKDTAGIALKVGWK- 358
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
V R IMDGD + NR P SL V V T ++N + P +ADF
Sbjct: 359 ---------VERHIMDGDVILFNRQP-----SLXXXRVRVMPYSTFRLNLSVTTPYNADF 404
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD ++L PQS ++AE+ +L V ++S + + D L + K+ + FL
Sbjct: 405 DGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLS 464
Query: 446 KAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG--------------- 487
+ + ++ +P+PA+ K R RWT QI+ VLPP
Sbjct: 465 REAVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKASQPPG 522
Query: 488 --FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 523 ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 582
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEI----------------------------QAL 576
L +GFS+ + D + I+ E+ +
Sbjct: 583 YWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 642
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQ 634
S + ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 643 ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQ 695
Query: 635 AGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMT 694
G ++ F +TL HF + +Y A G ++ + GL P E
Sbjct: 696 QSVEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFF 743
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H+++ RE ++ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 744 HAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYG 797
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 162/673 (24%), Positives = 295/673 (43%), Gaps = 90/673 (13%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANINVQKFEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPG 333
+T+ E V +NI L E+V N + Y +RE G L+ G
Sbjct: 186 TLTYPEIVTPYNIQALTEMVRNG---PNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDNDPVLFNRQPSLHKMSMMCHRVRVMPYSTFRMNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ EL +V Q++S + + + D L ++ M + FL+ +++ +
Sbjct: 303 HVPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDSFLE--YSEVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLI 497
++ P +P+PA+ K + WT QI+ +P G LI
Sbjct: 361 SICYWIPDWDGVIPQPAILKPK--PLWTGKQIMSLCIPKGIFLQRLDGSLLSPKDSGMLI 418
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G ++ T+ S ++ + EKGP + F ++Q ++ L +GFS+ +
Sbjct: 419 LDGEIIFGVVNKATVGSSAGGLIHTTMREKGPTVCAKLFGNIQKVVNYWLLHNGFSIGIG 478
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ---------------IENHIRH 601
D + I + I+ + + Q L++ + I N R
Sbjct: 479 DAIADPETMKAITETIKEAKDKVQGVIRDAQKNLLEAEPGMTLRESFEQKVSKILNEARD 538
Query: 602 VKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
A+ LK + + ++ + S + + Q + +G Q+ + GK + + H
Sbjct: 539 SAGKSAETSLKDDNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPH 597
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 598 FTTD-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 652
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA 780
+ L D+++ YDGT RN + +IQF Y + L AT + K
Sbjct: 653 LKALEDIMVHYDGTTRNSLGD-VIQFIYGEDG---------------LDATTVE----KQ 692
Query: 781 VLDSSPSSNNSWE 793
+D+ P SN+++E
Sbjct: 693 TVDTIPGSNSAFE 705
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 172/663 (25%), Positives = 291/663 (43%), Gaps = 62/663 (9%)
Query: 137 YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNF 196
Y D I + +PVPP + ++ G + DL+ + V ++ R+ +G
Sbjct: 307 YARPDWMIAQVIPVPPLAVRPAVVTFGSARNQDDLTHKLSDVVKTNNQLKRNEANGA--- 363
Query: 197 ESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFI 252
+ V + D++L QY S + A P + K L+ ++R +
Sbjct: 364 -AAHVLAEDVKLL--QYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLM 420
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R+VIT D ++ +GVP IAQ +TF E V NI+ LQELV N+ Y
Sbjct: 421 GKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELV-NRGDSQYP 479
Query: 313 DGSSSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ Y +RE G++ L+PG V R + DGD + NR PT HK S+
Sbjct: 480 --GAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 537
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V + T ++N + P +ADFDGD ++L PQSL KAEV E+ V +QL++
Sbjct: 538 KVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANK 597
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L ++++M K+ F++ L M + +P+PA+ K + WT Q
Sbjct: 598 PVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPK--PLWTGKQ 655
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +I+ E+L G TI
Sbjct: 656 VFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAG 715
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QAL 576
++ + E G E F+ +Q ++ L A+G ++ + D +A +IQ+ I +A
Sbjct: 716 NLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEGHTIGIGDTIADQATYRDIQETIRKAK 775
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQ 633
++ N+ ++ N +R + IL + T G S S+ K +
Sbjct: 776 LDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMV 835
Query: 634 QAGFLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHG 686
AG G + +S + VE F R P + +Y G ++ + G
Sbjct: 836 VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 895
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN ++Q
Sbjct: 896 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQ-LVQL 954
Query: 747 DYA 749
Y
Sbjct: 955 RYG 957
Score = 48.1 bits (113), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
++FG+ + EI SI + S + P LG ++ G+C +C S C
Sbjct: 91 VQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSL-ADC 149
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHF +IEL P++H +S+ LKL Y +L + D VKE+L++
Sbjct: 150 PGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKD---------SPRVKELLRK 200
Query: 124 IPEETRKKLA 133
R++LA
Sbjct: 201 TAGNARRRLA 210
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 174/729 (23%), Positives = 298/729 (40%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P ++ L + A + D +++ + E+LK I +E L F +
Sbjct: 179 YQP-NLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARP 237
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D ++ LPVPP + I G + DL+ + + E+IR+ ++G
Sbjct: 238 DWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 298 NIKMLQFHVATLVDNDMP---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRG 344
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 404
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 405 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 465 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ F++K + MF S +P+P + K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
I ++P + S GD + +++ E++ G + T+ +
Sbjct: 583 IFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ E G E F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 643 SLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 702
Query: 578 SLLY------HRM---STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 703 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 762
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 763 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 816
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 817 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 876
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 877 Q-LIQLRYG 884
>gi|344274310|ref|XP_003408960.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Loxodonta africana]
Length = 1392
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 201/758 (26%), Positives = 318/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NI++L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIHFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLTAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
scrofa]
Length = 1390
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 200/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NI +L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT Q+ +L P +D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQVFSVILRPSYDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|88601371|ref|YP_501549.1| DNA-directed RNA polymerase subunit A' [Methanospirillum hungatei
JF-1]
gi|88186833|gb|ABD39830.1| DNA-directed RNA polymerase, subunit A' [Methanospirillum hungatei
JF-1]
Length = 886
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 175/726 (24%), Positives = 306/726 (42%), Gaps = 99/726 (13%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
+++ L++IP++ +KL G + + I+ LPVPP + I + DL+
Sbjct: 175 ADIRARLEKIPDDDLQKLGIIGSVARPEWTIMTVLPVPPVTMRPSIILENGQRSEDDLTH 234
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
++ + + +G P +++ LQ V Y+ EV G +
Sbjct: 235 KLVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYIDNEVAGCPPARHR------ 287
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P T L+ + R K FSSR+VI+ D VNE+G+P +IA +T
Sbjct: 288 -SGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSSRTVISPDPNLSVNEVGIPQKIANEMTI 346
Query: 288 EERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP--------------- 332
+V V NI+ L+ +V G +L+ + +RP
Sbjct: 347 PVQVTVFNIDELRRIV--------RVGPDRPNLKSPCGANYVIRPDKRRIRLVKGTGADD 398
Query: 333 ------------GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
G +V R + DGD V NR P+ H+ S+ A V + D T ++NP +C
Sbjct: 399 GNLDFVADQIDVGWIVERHLRDGDIVLFNRQPSLHRMSIMAHWVRLMDGKTFRLNPAVCP 458
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQ+ A+ E L +V++ +LS G + D + + ++
Sbjct: 459 PYNADFDGDEMNLHIPQTEEARVEAAMLAAVQENILSPRFGGPIIGGIHDHISGIFLLTH 518
Query: 441 --KYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP------------ 486
++F + L + L P + W+ QI +LP
Sbjct: 519 TLRWFTKEETIDLLKNNKIDRLGEPGKVEDGVKY-WSNKQIFSKILPADLNMVFRASSCK 577
Query: 487 GFDSCG------DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
G D C D Y+ I E++ G D+ + + I+ I + G E F D +
Sbjct: 578 GCDECQRVDCERDAYVQIIDGELISGVIDKKAVGAFDGAILHRIIRQYGYERAARFIDDM 637
Query: 540 QPLLMENLFADGFSVSLEDFSLSKA-----------ALWNIQKEIQALYSLLYHRM--ST 586
L + + DGF+ +++D LSK+ A ++++ IQ M T
Sbjct: 638 TRLSIRAIMHDGFTFAIDDEDLSKSDYGQIREVLERAAQDVERRIQIFEDGQLEPMPGRT 697
Query: 587 QNELVDLQIENHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
E +++QI + + + + + S++ + S + ++ + Q AG +G Q
Sbjct: 698 PEETLEMQIMQVLGKARDNTGEIAGRHLGLSNSAVVMAVSGARGSMLNLTQMAGCVG-QQ 756
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ RG+ + + HF++ + +G + + GL+P E H+I RE
Sbjct: 757 AVRGERIMRGYEDRTLPHFKK-----HDRGAMAHGFVMNSYKSGLNPTEFFFHAIGGREG 811
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-HSLFPA 761
+V ++ S+ G L + ++ L+D+ + YD TVR IIQF+Y ++ S F
Sbjct: 812 LVDTAVRTSQSGYLQRRMINALQDLKVAYDMTVRTT-GGRIIQFEYGEDSTDPMKSSF-- 868
Query: 762 GEPVGV 767
GEPV V
Sbjct: 869 GEPVDV 874
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 13 QIVGIRFGLATQKEICTASI---------SDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I I FGL + KEI S+ D + L + LG+ +C++C +
Sbjct: 6 RIGKIEFGLLSPKEIRQMSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRCKTC-SQ 64
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+ G+C GHFG+IEL P+ H+ +L ++ + G RLL S E+++++
Sbjct: 65 KAGECPGHFGHIELAKPVI---HVGYTRLIRKLLRVTCRECG---RLLLSDEEIEKIIG- 117
Query: 124 IPEE 127
PEE
Sbjct: 118 -PEE 120
>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
Length = 1459
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 184/703 (26%), Positives = 305/703 (43%), Gaps = 106/703 (15%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKG----- 255
+ + LQ+AV Y+ +S V+ + TK + L ++G
Sbjct: 314 EQWDYLQMAVAMYI-------NSDSVNPALMPGGNGGGKTKPIRGFCQRLKGKQGRFRGN 366
Query: 256 -SG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL--- 307
SG FS R+VI+ D ++E+ VP +A+ +TF E+V +N + LQ+L+ N
Sbjct: 367 LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVH 426
Query: 308 ----CLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA 361
L + + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 427 PGANYLLKKNEEARRNLRYGDRIKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 486
Query: 362 LSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNG 421
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 487 HYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSG 546
Query: 422 NLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWT 475
+ D + S + K F D+A F Q L+M + L P PA+ R WT
Sbjct: 547 EPIIAATQDFITGSYLISHKDSFFDRATFVQMLSMMSDGNLQFDIPPPAI--MRPHYLWT 604
Query: 476 ALQILQSVLPPGFD--------------------------SCGDRY-LIKKSEVLKGDFD 508
Q+ ++ P S D Y +I+ S +L G D
Sbjct: 605 GKQLFSLLIKPNKKSPVIINLDAKNKVYIAPKNKAYPNEMSANDGYVVIRGSNILSGVMD 664
Query: 509 RDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALW 567
+ + + + +I + GP+E + + + L L GFS+ + D +
Sbjct: 665 KSVLGDGKKHSVFYTILRDFGPQEATQAMNRMAKLCARYLGNRGFSIGISDVTPGVELKA 724
Query: 568 NIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------------IRHV 602
++ ++ Y+ LY R + TQ NE L+ + IR +
Sbjct: 725 TKEEMVEIAYAKCDELIDLYKRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIREL 784
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
L A I+ +T G + + S + VV Q G ++ D F ++L HF
Sbjct: 785 DNLNAPLIM--ATCGSKGSNLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF- 834
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 835 ---PKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 890
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR SN I+QF Y + ++ +PV
Sbjct: 891 SLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPLNMEGNAKPV 932
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 176/723 (24%), Positives = 299/723 (41%), Gaps = 72/723 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P +I L + A + D +++ S V E+ K I +E L F +
Sbjct: 180 YQP-NIRRTGLDLTAEWKHVNEDSQEKKIALSAERVWEIFKHITDEECFILGMDPKFARP 238
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
D I+ LPVPP + + G + DL+ + V E+ R+ SG + S+
Sbjct: 239 DWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIVKSNNELARNEASGAAAHVISE 298
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ +A ++ G ++ + S P KA L+ ++R + K
Sbjct: 299 NIKMLQFHVATLVDNDMPGLPRAMQK-------SGKPLKAVKARLKGKEGRIRGNLMGKR 351
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D R++++GVP IAQ +TF E V NI + ELV
Sbjct: 352 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMMELVQRGNSQYPGAKY 411
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 412 IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLP 471
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 472 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIV 531
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL 484
D L +++ M K+ F++K L MF +P+PA+ K + WT Q+ ++
Sbjct: 532 QDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILKPK--PLWTGKQVFSLII 589
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + T+ + ++
Sbjct: 590 PGNVNLIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGASAGSLLHIC 649
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY-- 581
F E G E F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 650 FLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 709
Query: 582 ----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
H M T + EN + + K + + + L ++ + S
Sbjct: 710 IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKG 769
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK + HF + +Y G ++ + G
Sbjct: 770 SNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAG 823
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 824 LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQ-LIQL 882
Query: 747 DYA 749
Y
Sbjct: 883 RYG 885
>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
garnettii]
Length = 1390
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 202/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLTAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 176/692 (25%), Positives = 292/692 (42%), Gaps = 76/692 (10%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
EV+ L++IP++ K L G P+D +L LPVPP + P + S D
Sbjct: 183 EVRGRLEKIPDDDVKLLGGD---PRDARPEWMVLTVLPVPPRSVR-PSVLLETGIRSEDD 238
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA---KSSRDVDA 228
L +++ +R G E E LQ V Y + R
Sbjct: 239 LTHKLVDIIRTNNRLREHVEGGAPSAIIEDEWELLQYHVTTYFDNEAPGIPVAKHRSGKT 298
Query: 229 RFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
G++Q + +R K FS+R+V++ D +NE+GVP ++A+ +T
Sbjct: 299 LKGIAQRLKGKEGRFRNNLRG----KRVDFSARTVVSPDPSLSINEVGVPEDVARILTVP 354
Query: 289 ERVNVHNINYLQELVDNKL-------CLTYSDGSS-SYSLREGSKGHTFLRPGQVVHRRI 340
ERV NI ++ LV N + DG S + L PG +V R +
Sbjct: 355 ERVTPWNIEEMRRLVLNGPEKWPGANYVVRPDGRKISLKFVDRKAAAEALEPGFIVERHL 414
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
MDGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++L PQS
Sbjct: 415 MDGDVVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQSEE 474
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFL---DKAFTQQLAMFAL 457
A+ E L VE+ +L+ G + D + ++ K L D
Sbjct: 475 ARTEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLSKDDVVDLLAVTGYK 534
Query: 458 SPLPRPALSKARCSARWTALQILQSVLPPGFD-------------SCGDR-------YLI 497
+P PA+ K R WT Q++ LP F+ C D ++
Sbjct: 535 GEIPEPAILKPR--ELWTGKQLVSLFLPKDFNYKRNSKIGSAAALRCIDEDCPHDSMVIV 592
Query: 498 KKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL 556
K +L+G D+ +I E +V + E G + F D + + + GF++S
Sbjct: 593 KNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKHGFTMSY 652
Query: 557 EDFSLSKAA-------LWNIQKEIQALYSLLYHRMSTQ------------NELVDLQIEN 597
+L + A + ++E++ L S Y R Q +E++D +
Sbjct: 653 SHLTLPEEARNRLREIILEKKREVEELIS-KYRRGELQARPGKTPEETLEDEIIDTLSKK 711
Query: 598 HIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ V ++ + + + + + + + Q A LG Q + RGK ++ +
Sbjct: 712 LLDSVAEVITPYFTLVNPVVVMARTGARGNPVNLTQMAALLG-QQTVRGKRLTRGYLGRA 770
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF+ P DL P A+ G I F +GL+P E H+ + RE ++ ++ S+ G +
Sbjct: 771 LPHFK---PEDLG-PEAR-GFIANGFVNGLNPVEMFFHAAAGREGLIDTAVRTSQSGYMQ 825
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+ L+D+ + YDG+VR + + I+Q Y
Sbjct: 826 RRLINALQDLRVEYDGSVR-LTTGEIVQLLYG 856
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 7 STILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES-CGTSEP 65
S ++ +I ++FG+ + EI S++ I A N G P++ G + G EP
Sbjct: 2 SRVITNRITRVKFGILSPDEIRKMSVT--QIFSAEVYDND--GSPIDGGVMDRRLGAIEP 57
Query: 66 GK-----------CEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGVAQ- 108
G+ C GHFG+IEL P+ H + + + + A +L+I + +
Sbjct: 58 GEACPICGNTRDSCPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEERNEY 117
Query: 109 -RLLSSCCEVKE--MLKRIPEETRKKLAGKGYFPQDG 142
RLLS E+ ++KR E R+K + P G
Sbjct: 118 LRLLSDLHELGAPYLIKRFHEYIRRKASAAEVCPHCG 154
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
Length = 1460
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 210/858 (24%), Positives = 362/858 (42%), Gaps = 139/858 (16%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I+S + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKSGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL+V Y+ + G + V G Q K + R
Sbjct: 314 EHWDYLQLSVAMYINSDSVNPAMMPGASSGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL----- 307
K FS R+VI+ D ++E+ VP +A+ +T+ E+V +N LQ+L+ N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLINGPNVHPG 429
Query: 308 --CLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L D + +LR G K LR G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKKDEDARRNLRYGDRVKLAKNLRVGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDK-AFTQQLAMFALSPL----PRPALSKARCSARWTAL 477
+ D + S + K F D+ + TQ L+M + L P PA+ K C WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFFDRGSLTQLLSMMSDGNLQFDIPAPAIMKP-CYL-WTGK 607
Query: 478 QILQSVLPPGFDSC--------------------------GDRY-LIKKSEVLKGDFDRD 510
Q+ ++ P S D Y +I+ SE+L G D+
Sbjct: 608 QVFSLLIKPNKKSPVVINLDAKNKVFIPPKSKSLPSEMSQNDGYVIIRGSEILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + + ++
Sbjct: 668 VLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGISDVTPAD----DL 723
Query: 570 QKEIQALYSLLYHRMSTQNELVD------LQIENHIRHVKMLVAKF-------------- 609
+K+ + + Y + +EL+D L+ + + L AK
Sbjct: 724 KKKKEDMVEFAYAKC---DELIDSYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDV 780
Query: 610 ----------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
L +T G + + S + VV Q G ++ D F ++L
Sbjct: 781 CINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----P 833
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + +
Sbjct: 834 HF----PKNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRR 888
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
LM L D+ YD TVR SN I+QF Y + + +PV + + N A+
Sbjct: 889 LMKSLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPMEMEGNAQPVNFVRSW---NHAFN 944
Query: 780 AVLDSSPSSNNSWELMKEI--LLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAA---Y 834
+++ +++ +E +L P+ R+I Y N G+ +E+ A Y
Sbjct: 945 VTFNNTERGLFPYQIEEETDKILA-------PLMNRLIRYDN---VGKLVPKEKDALIEY 994
Query: 835 MVKNQLKR---VSLKD---AAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLRI 884
+ +N +R +SLK E L +K E++ + +I ++ + E++R
Sbjct: 995 IDQNDAERNFYLSLKSFMRGKAELLASVRKQRGMKELLDEPGPEFKNIDFDEDVPENIRH 1054
Query: 885 SMHDILPKCQETLKSFCK 902
S+ + ++++ F K
Sbjct: 1055 SVDQLCRITGDSVREFLK 1072
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|10582043|gb|AAG20692.1| DNA-directed RNA polymerase subunit A [Halobacterium sp. NRC-1]
Length = 926
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 170/649 (26%), Positives = 284/649 (43%), Gaps = 63/649 (9%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 235 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 293
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 294 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 345
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCL 309
FS+R+VI+ D +NE+GVP +A +T VN N+ + V N +
Sbjct: 346 NFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYV 405
Query: 310 TYSDGSS-SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
T DG + + + + PG V R ++DGD + NR P+ H+ S+ A V V
Sbjct: 406 TRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMP 465
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N ++C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 466 YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAI 525
Query: 429 TDALLSLKVMFKK--YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + ++ F + + L + LP A + WT QI +LP
Sbjct: 526 QDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQYWTGHQIFSELLPD 585
Query: 487 GFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
+ GD +I+ ++L+G D + +EIV +I G F + +
Sbjct: 586 DLSLEFTGTTGDTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVAS 645
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRH 601
L M ++ GFS+ ++D ++S A I + IQ+ Y + + T E DL+ R
Sbjct: 646 LAMRSIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETY-ENGDLESLPG-RT 703
Query: 602 VKMLVAKFILKSSTLGYLIDSKSDSA---------------------VSKVVQQAGFLGL 640
V + I++ TLG DS D A + + Q AG +G
Sbjct: 704 VDETLEMKIMQ--TLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQ 761
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q RG+ ++ + SHF P DL+ + +G ++ + GL P E H++ R
Sbjct: 762 QAV-RGERINRGYEDRTLSHF---APNDLS--SEAHGFVENSYTSGLTPKEFFFHAMGGR 815
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E +V ++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 816 EGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 863
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 170/711 (23%), Positives = 291/711 (40%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D +++ + E+LK I +E L F + D ++ LPVPP +
Sbjct: 196 HVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVRPA 255
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E+IR+ ++G F + ND+
Sbjct: 256 VIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMP 315
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 316 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +QELV D LR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 423 FHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K + MF S +P+P + K + WT QI ++P +
Sbjct: 543 RDVFIEKEQMMNILMFLPSWDGKMPQPCILKPK--PLWTGKQIFSLIIPGNVNMIRTHST 600
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G E F
Sbjct: 601 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF 660
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRM---ST 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 661 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 720
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 721 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 780
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 781 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 884
>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
[Taeniopygia guttata]
Length = 1369
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 207/775 (26%), Positives = 321/775 (41%), Gaps = 118/775 (15%)
Query: 117 VKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V + KRIP E L AGK P D IL L VPP C+ +SD S + D
Sbjct: 202 VLNLFKRIPVEDIPLLLMNPQAGK---PSD-LILTRLLVPPLCIRPSVVSDLKSGTNEDD 257
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ ++I+ R + + + LQL Y+ E+ G
Sbjct: 258 LTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP--------- 308
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P T+ ++++++ R K FS R+VI+ D R++E+ VP +A
Sbjct: 309 --LNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVA 366
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL-----------TYSDGSSSYSLREGSKGHTFLR 331
+ +TF E+VN NIN++++LV N + T Y RE K L+
Sbjct: 367 KILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQRHTQMKRFLKYGNRE--KMAQELK 424
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADFDGD +
Sbjct: 425 FGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEM 484
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQ 450
+L PQ+ AKAE L L + L++ NG + D L ++ K F D+A
Sbjct: 485 NLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKAC 544
Query: 451 QLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPP-------------GFD 489
Q+ L LP PA+ K WT Q+ +L P G
Sbjct: 545 QIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSLILKPSDDCPVKANLRTKGKQ 602
Query: 490 SCG--------DRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSL 539
CG D Y+ I+ SE++ G D+ T+ S N I + + G E + L
Sbjct: 603 YCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRL 662
Query: 540 QPLLMENLFADGFSVSLED-----------FSLSKAALWNIQKEIQALYS--LLYHRMST 586
L L GFS+ + D + L A + I+AL + L T
Sbjct: 663 ARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCT 722
Query: 587 QNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSD----SAVSKVVQQAG 636
E ++ I + ++ L+ S + L SK S + V Q
Sbjct: 723 AEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQA 782
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ D F +++L HFE+ + P AK G + F+ GL P E H+
Sbjct: 783 ISGSRVPD--GFENRSL-----PHFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHT 830
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
++ RE +V ++ +E G + + L+ L D+ YD TVR+ + IIQF Y +
Sbjct: 831 MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPA 889
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN----NSWELMK--EILLCRVSF 805
++ EP+ Y + + S N S +MK E L C+ SF
Sbjct: 890 AMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLCCQDSF 944
>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
Length = 1368
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 191/748 (25%), Positives = 325/748 (43%), Gaps = 99/748 (13%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCEV------KEMLKRIPEETRKKLAGKGYF--PQDGYIL 145
M +F+ ++++ + LLS EV +++ +IPEE L P+D IL
Sbjct: 192 MGSFEAAMEHNKDLEPLLSKTQEVLNPIKVQQIFLQIPEEEIPLLMMNPEVGSPKD-LIL 250
Query: 146 EYLPVPPNCLSVPDISD-GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQEVES 203
+ VPP C+ +SD T D+++ M + + I + +G + ++ +
Sbjct: 251 TRILVPPICIRPSVVSDLKAGTNEDDITMKMTEIMFLNDVIQKHKATGAKMSMIMEDWDY 310
Query: 204 NDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR-------KGS 256
LQ+A+ E G + P T+ ++++++ R K
Sbjct: 311 LQLQVALLYNSETSGIP-----------LHMQPKKMTRGFVQRLKGKQGRFRGNLSGKRV 359
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTY----- 311
FS R+VI+ D R++++ VP +A+ +T+ ERVN NI +++LV N C T+
Sbjct: 360 DFSGRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNG-CDTHPGANF 418
Query: 312 ---SDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
D + LR G++ L+ G +V R ++D D + NR P+ HK S+QA V
Sbjct: 419 IQQRDNNMKRYLRYGNREKIAKELKFGDIVERHLIDNDIILFNRQPSLHKLSIQAFYAKV 478
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T + N C P +ADFDGD ++L PQ+ AKAE + L + +++ NG +
Sbjct: 479 MPHRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAITLMGSKSNIITPRNGEPLIA 538
Query: 427 LATDALLSLKVMFKK-YFLDKAFTQQLAMFALS--------PLPRPALSKARCSARWTAL 477
D + ++ +K FLD+A QL LS LP PA+ K WT
Sbjct: 539 AIQDFITGGYLITQKDVFLDRARACQLIASMLSGRERTLKIDLPPPAIIKP--IKLWTGK 596
Query: 478 QILQSVLPP-------------------GFDSC-GDRY-LIKKSEVLKGDFDRDTI-PSV 515
QI +L P G D C D + +I+ SE+L G D+ T+
Sbjct: 597 QIFSVLLRPNKNSPVRANLWTKGKNYSGGEDLCINDSFVVIRNSELLCGAMDKGTLGGGS 656
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
N I I + G +E + L L L GFS+ + D + + ++
Sbjct: 657 KNNIFYVILRDFGEQEAADALSRLARLCPAYLSHRGFSIGIGDVTPGAGLIKAKNNLLED 716
Query: 576 LYS--------LLYHRMSTQ-----NELVDLQIENHIRHVKMLVAKFILK-----SSTLG 617
Y+ L ++ TQ E ++ I + ++ K L+ +S L
Sbjct: 717 GYTKCDSFIRDLEEGKLQTQPGCSEEETLEAMILRELSVIRDHAGKACLRELHKSNSPLN 776
Query: 618 YLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYG 677
I S ++ + Q +G Q + GK + HFE+ + D P A+ G
Sbjct: 777 MAICGSKGSFIN-ISQMIACVG-QQAISGKRTPNGFEDRALPHFEK-FSKD---PAAR-G 829
Query: 678 LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ F+ GL P E H+++ RE +V ++ +E G + + L+ L D+ YD TVR+
Sbjct: 830 FVENSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRS 889
Query: 738 VCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+N I+QF Y ++ S+ +P+
Sbjct: 890 -STNDIVQFVYGGDSLDPASMEGKDQPI 916
>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Taeniopygia guttata]
Length = 1390
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 207/775 (26%), Positives = 321/775 (41%), Gaps = 118/775 (15%)
Query: 117 VKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V + KRIP E L AGK P D IL L VPP C+ +SD S + D
Sbjct: 223 VLNLFKRIPVEDIPLLLMNPQAGK---PSD-LILTRLLVPPLCIRPSVVSDLKSGTNEDD 278
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ ++I+ R + + + LQL Y+ E+ G
Sbjct: 279 LTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP--------- 329
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P T+ ++++++ R K FS R+VI+ D R++E+ VP +A
Sbjct: 330 --LNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVA 387
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL-----------TYSDGSSSYSLREGSKGHTFLR 331
+ +TF E+VN NIN++++LV N + T Y RE K L+
Sbjct: 388 KILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQRHTQMKRFLKYGNRE--KMAQELK 445
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADFDGD +
Sbjct: 446 FGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEM 505
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQ 450
+L PQ+ AKAE L L + L++ NG + D L ++ K F D+A
Sbjct: 506 NLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKAC 565
Query: 451 QLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPP-------------GFD 489
Q+ L LP PA+ K WT Q+ +L P G
Sbjct: 566 QIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSLILKPSDDCPVKANLRTKGKQ 623
Query: 490 SCG--------DRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSL 539
CG D Y+ I+ SE++ G D+ T+ S N I + + G E + L
Sbjct: 624 YCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRL 683
Query: 540 QPLLMENLFADGFSVSLED-----------FSLSKAALWNIQKEIQALYS--LLYHRMST 586
L L GFS+ + D + L A + I+AL + L T
Sbjct: 684 ARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCT 743
Query: 587 QNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSD----SAVSKVVQQAG 636
E ++ I + ++ L+ S + L SK S + V Q
Sbjct: 744 AEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQA 803
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ D F +++L HFE+ + P AK G + F+ GL P E H+
Sbjct: 804 ISGSRVPD--GFENRSL-----PHFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHT 851
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
++ RE +V ++ +E G + + L+ L D+ YD TVR+ + IIQF Y +
Sbjct: 852 MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPA 910
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN----NSWELMK--EILLCRVSF 805
++ EP+ Y + + S N S +MK E L C+ SF
Sbjct: 911 AMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLCCQDSF 965
>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
Length = 1238
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 195/702 (27%), Positives = 307/702 (43%), Gaps = 88/702 (12%)
Query: 116 EVKEMLKRIPEETRKKL---AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVS-TMSSDL 171
EV + +RIP+E + + + G+ P+D IL LPVPP C+ +SD S T DL
Sbjct: 73 EVMHLFERIPDEDVQYILMNSEHGH-PKD-MILTRLPVPPACIRPSVMSDLKSGTNEDDL 130
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESN--DLQLAVGQYL--EVRGTAKSSRDVD 227
++ + + V I++ SG +SQ + + LQ Y+ E+ G +
Sbjct: 131 TMKLTEIVFLNDVIVKHRLSGA---KSQIILEDWYFLQFQCALYINSELSGIPFDMQPKK 187
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
G+ Q K + R K FS R+VI+ D R++++GVP +A+ +T+
Sbjct: 188 PSRGLVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEMVAKILTY 243
Query: 288 EERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHR 338
VN NI +++LV N + L + SL+ G++ L+ G V+ R
Sbjct: 244 PTLVNEANIELMRKLVRNGPDIHPGAIFLKKKVSKLTISLKHGNRETLARNLKRGDVIER 303
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+MD D V NR P+ HK S+ + T + N +C P +ADFDGD + L +PQ+
Sbjct: 304 HMMDEDIVLFNRQPSLHKLSIMCHRAKILPHRTFRFNECVCTPYNADFDGDEMTLHFPQT 363
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL 457
A+AE L L + + L++ NG L + D + ++ K F D+A T Q+ L
Sbjct: 364 EEARAEALILMTNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASML 423
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPP--------GFDSCGDRY------ 495
+ LP P + K +A W+ QI +L P + G Y
Sbjct: 424 AGDEVNMVIKLPPPCIQKP--AALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEE 481
Query: 496 --------LIKKSEVLKGDFDRDTI--PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
L++ SEVL G D+ TI S IN I + + G + ++ L +
Sbjct: 482 FCVNDGFLLVRNSEVLAGCVDKSTIGSGSKIN-IFYVLLRDYGEDFAIQAMWKLCRVASY 540
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL--YHRMSTQNEL-----------VD 592
+ GFS+ + D + K L QK + + +S Y R+ + +L ++
Sbjct: 541 YMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGFSKCDEYIRLLSIGQLPCLPGCKKEESLE 600
Query: 593 LQIENH---IRHVKMLVAKFILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK 647
+I IR V K L S L+ SKS S S + Q +G Q + GK
Sbjct: 601 SKITKELSGIRDQAGEVCKKKLHPSN-SPLVMSKSGSKGSYINISQMIACVGQQALN-GK 658
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
+ HF+R P AK G + F+ GL P E ++S RE +V ++
Sbjct: 659 RVPNGFEDRSLPHFKR----HSKIPAAK-GFVSNSFYSGLSPTEFFFLAMSGREGLVDTA 713
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+EP + + L+ L D+ YD TVRN + IIQF Y
Sbjct: 714 VTTAEPMYMQRRLIKFLEDLCCQYDSTVRN-SAGEIIQFVYG 754
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 166 bits (420), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 174/729 (23%), Positives = 298/729 (40%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P ++ L + A + D +++ + E+LK I +E L F +
Sbjct: 179 YQP-NLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARP 237
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D ++ LPVPP + I G + DL+ + + E+IR+ ++G
Sbjct: 238 DWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 298 NIKMLQFHVATLVDNDMP---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRG 344
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 404
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 405 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 465 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ F++K + MF S +P+P + K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
I ++P + S GD + +++ E++ G + T+ +
Sbjct: 583 IFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ E G E F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 643 SLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 702
Query: 578 SLLY------HRM---STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 703 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 762
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 763 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 816
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 817 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 876
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 877 Q-LIQLRYG 884
>gi|195175545|ref|XP_002028504.1| GL19707 [Drosophila persimilis]
gi|194104024|gb|EDW26067.1| GL19707 [Drosophila persimilis]
Length = 968
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 196/773 (25%), Positives = 328/773 (42%), Gaps = 114/773 (14%)
Query: 56 KCESCGTSEPGKCEG-------HFGYIELPIPIYHPSHISE-LKLTMYA--FQLQIKNDG 105
KC CGT+ G +G H Y + S++ E L+ T + L + N
Sbjct: 153 KCPHCGTANGGVKKGPGLLKILHDPYKGRKVDAVFTSNMDEMLRSTEFNRDLNLTLSNYS 212
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDISD- 162
A+ L + V ++ ++IP+ L +G P+ I+ + VPP C+ +S+
Sbjct: 213 TAEEL--TPLMVLDLFEQIPQSDVALLGMCSRGAHPKH-LIVTRVFVPPACIRPSVLSEV 269
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTA 220
T DL++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 270 KAGTTEDDLTMKQ-SEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYFHSEISGIP 328
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVN 273
++ P TT+ +++++ R K FS R+VI+ D +N
Sbjct: 329 -----------INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMIN 377
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFL--- 330
++GVP +A+ +T+ ERVN+ NI +++ LV N + ++Y + GS +L
Sbjct: 378 QVGVPVRVAKILTYPERVNLANIRHMKHLVRNG---PGTHPGANYVQQRGSSFKKYLAYG 434
Query: 331 ---------RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 381
+ G +V R + D D V NR P+ HK S+ V T + N C P
Sbjct: 435 NREKVAQELKCGDIVERHLCDNDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTP 494
Query: 382 LSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK 441
+ADFDGD ++L PQ+ A+AE L L + L++ NG + + D + ++ +K
Sbjct: 495 YNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQK 554
Query: 442 -YFLDKAFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC- 491
FL K QLA L +P PAL K R WT QI ++ P DS
Sbjct: 555 EVFLTKEEAMQLAACFLDNEDSTMNIQIPAPALLKPR--RLWTGKQIFSLLMRPNSDSHI 612
Query: 492 -------GDRYL-------------IKKSEVLKGDFDRDTIPSVINEIVTSI----FFEK 527
G Y I+ SE++ G D+ T+ S + + + F E
Sbjct: 613 RLNMVNKGRNYTKNMDLCINDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGEA 672
Query: 528 GPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS----LLYHR 583
+ + + ++NL GFS + D + S+ L + + ++ Y+ + H
Sbjct: 673 HATKAMWRLARITSYFIQNL---GFSFGISDVTPSQKLLHHKEILLERGYAKCNDYIEHL 729
Query: 584 MS---------TQNELVDLQIENHIRHVKMLVAK--FILKSSTLGYLIDSKSDSAVS--K 630
S T E ++ + + ++ AK F T LI + S S S
Sbjct: 730 KSGTLQCQPGCTPKETLESVMLRELSGIREQAAKTCFAELHPTNSALIMALSGSKGSNIN 789
Query: 631 VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPY 690
+ Q +G Q + GK HF+R + P A+ G ++ F+ GL P
Sbjct: 790 ISQMIACVG-QQAISGKRVPNGFENRALPHFDRHSAI----PAAR-GFVQNSFYSGLTPT 843
Query: 691 EEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
E H+++ RE +V ++ +E G L + L+ L D+V+ YDGTVRN S +
Sbjct: 844 EFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVSEMV 896
Score = 41.6 bits (96), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 25/130 (19%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQ---------LANPFLGLPL 52
+E ++ L +I ++FG++ EI ++ + + Q + + +G+
Sbjct: 3 KEQFRASALNKKISHVQFGISGADEIQQEALVRITSKNLYQGQRQPVPSGVLDRRMGIST 62
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+ CE+CG +C GHFGY++L +P++H H F+ I + Q +
Sbjct: 63 KDAVCETCGHGL-NECIGHFGYLDLALPVFHIGH----------FRATIN---ILQMICK 108
Query: 113 SCCEVKEMLK 122
SC +V MLK
Sbjct: 109 SCAQV--MLK 116
>gi|157741612|gb|ABV69511.1| RNA polymerase II largest subunit, partial [Verrucaria weddellii]
Length = 999
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 282/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAEPSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMVSMVLPPALNLVRIDGKASQPAIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDIGTVEKIKSEVDKKKSEVERITQSAVAEELEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V+Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVEQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDATVRDSRGN-IVQFIYG 794
>gi|16554525|ref|NP_444249.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. NRC-1]
gi|169237149|ref|YP_001690349.1| DNA-directed RNA polymerase subunit A' [Halobacterium salinarum R1]
gi|338819300|sp|B0R8D4.1|RPOA1_HALS3 RecName: Full=DNA-directed RNA polymerase subunit A'
gi|338819301|sp|P0CX02.1|RPOA1_HALSA RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167728215|emb|CAP15003.1| DNA-directed RNA polymerase subunit A' (subunit A) [Halobacterium
salinarum R1]
Length = 971
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 170/649 (26%), Positives = 284/649 (43%), Gaps = 63/649 (9%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 280 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 338
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 339 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 390
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL-------CL 309
FS+R+VI+ D +NE+GVP +A +T VN N+ + V N +
Sbjct: 391 NFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYV 450
Query: 310 TYSDGSS-SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
T DG + + + + PG V R ++DGD + NR P+ H+ S+ A V V
Sbjct: 451 TRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMP 510
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N ++C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 511 YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAI 570
Query: 429 TDALLSLKVMFKK--YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + ++ F + + L + LP A + WT QI +LP
Sbjct: 571 QDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQYWTGHQIFSELLPD 630
Query: 487 GFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
+ GD +I+ ++L+G D + +EIV +I G F + +
Sbjct: 631 DLSLEFTGTTGDTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVAS 690
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRH 601
L M ++ GFS+ ++D ++S A I + IQ+ Y + + T E DL+ R
Sbjct: 691 LAMRSIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETY-ENGDLESLPG-RT 748
Query: 602 VKMLVAKFILKSSTLGYLIDSKSDSA---------------------VSKVVQQAGFLGL 640
V + I++ TLG DS D A + + Q AG +G
Sbjct: 749 VDETLEMKIMQ--TLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQ 806
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q RG+ ++ + SHF P DL+ + +G ++ + GL P E H++ R
Sbjct: 807 QAV-RGERINRGYEDRTLSHF---APNDLS--SEAHGFVENSYTSGLTPKEFFFHAMGGR 860
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E +V ++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 861 EGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 908
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
Length = 1452
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 177/697 (25%), Positives = 308/697 (44%), Gaps = 83/697 (11%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGV 164
R+LS+ + E+ KRI ++ K+ G P+ D IL LPVPP + I D
Sbjct: 180 RILSAE-RIYEIFKRISDQDCNKI---GLNPKLARPDWMILTVLPVPPPSIRPSIIFDST 235
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRS------GTPNFESQEVESNDLQLAVGQYLEVRG 218
S DL+ K +IIR ++S + + N LQ VG Y++
Sbjct: 236 SRAEDDLT-------YKLSDIIRCNKSLSHLIISYAPLQLINEQINLLQYHVGSYMD--- 285
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNE 274
++ ++ + P + + L+ ++R + K FS+R+VIT D + E
Sbjct: 286 --NTTPNLAKSIQKTGRPIKSIRQRLQGKEGRIRGNLMGKRVDFSARTVITPDPNILLEE 343
Query: 275 IGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGSK-G 326
IG+P+ +A +T+ E V N Y+++LV N + +DG+ LR K
Sbjct: 344 IGIPWNVALNLTYPEIVTNFNYQYMKQLVQNGPTRYPGAKYVIKNDGTR-LDLRYVKKLS 402
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
+ +L G V R + DGD + NR P+ HK S+ + V + D T ++N P +ADF
Sbjct: 403 NVYLEIGYQVERHLRDGDVILFNRQPSLHKMSMMSHIVKIMDYSTFRMNLSATTPYNADF 462
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLD 445
DGD ++L PQ+L + +E+L L +V K +LS + + + D+L+ ++ +K F+D
Sbjct: 463 DGDEMNLHLPQTLESTSELLNLLTVSKCILSQQSNKPVIGIVQDSLIGAFLLTQKDVFMD 522
Query: 446 KAFTQQLAMF--ALSPLPRPALSKARCSARWTALQILQSVLP---------------PGF 488
L + + +P P K + WT Q+ +LP F
Sbjct: 523 MCTLNMLLIHIDGCNSIPFPTFIKP--NILWTGKQVFSLILPSVNLTRNCINYSDTETNF 580
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
S ++ +I +++ G D+ + S I+ + E GPE+ F Q ++ L
Sbjct: 581 -SQDNKVIILNGQLICGVIDKRSAGSSSGGIIHVCWKEYGPEKTAFFISQFQWMINHWLL 639
Query: 549 ADGFSVSLEDFSLSK----AALWNIQKEIQALYSLLYHRMST--------QNELVDLQIE 596
GFSV +ED +K + I+K + +L ++++ +E+ + QI
Sbjct: 640 LCGFSVGVEDTIANKIINLKVVSIIKKAKNEVRYILRKKVTSAEIYPDKNSDEIFECQIN 699
Query: 597 NHIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKT 652
+ + +V K + + + ++ S S + Q +G Q + GK
Sbjct: 700 KILNTARDQAGSIVQKLLSDKNNIKKMVISGSKGNFINISQIIACVG-QQNVNGKRIDSA 758
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
HF D N P K G ++ + GL+P E H++ RE ++ ++ SE
Sbjct: 759 FGSRCLPHF----LFDDNGPETK-GFVQNSYSSGLNPDEFFFHAMGGREGLIDTAIKTSE 813
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L ++ D+V+ YD TVRN I++F Y
Sbjct: 814 TGYIQRRLSKIMEDIVVEYDLTVRN-AQKEILEFFYG 849
>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
Length = 999
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 164/647 (25%), Positives = 285/647 (44%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++ V N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQFVTNGPEIHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAILKPR--PRWTGKQMVSMVLPPALNLVRIDGKASQSPCER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLIDSK---------SDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ S+T L DS S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYVQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|157741594|gb|ABV69502.1| RNA polymerase II largest subunit, partial [Hydropunctaria maura]
Length = 999
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 157/635 (24%), Positives = 282/635 (44%), Gaps = 82/635 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++ V N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTQFNISRLKQFVTNGPEM---HPGARYIIREHNERIDLRYHKNTAEITLKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIVKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPAERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ ++F E G E + FF+ Q L+ L +GFS
Sbjct: 529 GLFVADGKLMFGLFNKKSVGTGSNGIIHTVFNEFGHEAAMAFFNGAQTLVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE-LVDLQIENHIRHVKMLVAKFILK 612
+ + D + I+ E+ R T+ E + + + + + + +
Sbjct: 589 IGIGDTVPDVGTVEKIKSEVD--------RKKTEVERITQSAVAEDLEALPGMNVRETFE 640
Query: 613 SSTLGYLIDSKSDSA---------VSKVVQ--QAGFLG--LQLSDRGKFYSKTLVEDIAS 659
S L ++ ++ ++ +Q +AG G + +S + VE
Sbjct: 641 SKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKGI 700
Query: 660 HFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 714
F R P +Y A G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 701 PFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 760
Query: 715 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 761 YIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 181/755 (23%), Positives = 320/755 (42%), Gaps = 81/755 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
Y P I L ++A + D +++L S V E+ KRI +E L F +
Sbjct: 185 YQP-RIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKFARP 243
Query: 142 GY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-NFESQ 199
+ I+ LPVPP + + G + DL+ + V ++ R+ +SG + ++
Sbjct: 244 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAE 303
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
+V+ +A E+ G ++ + S P + K L+ ++R + K
Sbjct: 304 DVKLLQFHVATMVDNELPGLPRAMQK-------SGRPLKSIKQRLKGKEGRVRGNLMGKR 356
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------L 309
FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV
Sbjct: 357 VDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKY 416
Query: 310 TYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D LR K L+ G V R + DGD V NR PT HK S+ V +
Sbjct: 417 IIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 476
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ + + +
Sbjct: 477 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 536
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVL 484
D L +++ K+ FL++ L MF + +P+PA+ K R WT QI ++
Sbjct: 537 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPR--PLWTGKQIFSLII 594
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +++ E++ G + ++ + +V
Sbjct: 595 PGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHIS 654
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
+ E G + F+ ++Q ++ L +G S+ + D +IQ I+ +
Sbjct: 655 YLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEV 714
Query: 584 M--STQNEL-------VDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDS 626
+ + NEL + EN + + K + + + ++ + S
Sbjct: 715 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 774
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ + Q +G Q + GK HF + +Y G ++ + G
Sbjct: 775 SKINISQVIAVVG-QQNVEGKRIPFGFKHRTLPHF-----IKDDYGPESRGFVENSYLAG 828
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YD TVRN N ++Q
Sbjct: 829 LTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQL 887
Query: 747 DYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYK 779
Y + AGE V LA+ SN A++
Sbjct: 888 RYGEDGL-------AGENVEFQNLASLKPSNKAFE 915
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGIISPDELKRMSVTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNM-T 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H IS++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFISKI 101
>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
Length = 1410
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 190/728 (26%), Positives = 311/728 (42%), Gaps = 105/728 (14%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISD-GVSTMSSDL 171
V ++ ++IP+ + +A G D + I+ + VPP C+ +S+ T DL
Sbjct: 249 VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDL 305
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 306 TMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIP--------- 355
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P TT+ +++++ R K FS R+VI+ D +N++GVP +A
Sbjct: 356 --INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVA 413
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL------TYSDGSS-----SYSLREGSKGHTFLR 331
+ +T+ ERVN NI +++ELV N + GSS +Y RE K L+
Sbjct: 414 KILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVAQELK 471
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G VV R + DGD V NR P+ HK S+ V T + N C P +ADFDGD +
Sbjct: 472 CGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEM 531
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQ+ A+AE L L + L++ NG + + D + ++ +K FL K
Sbjct: 532 NLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAM 591
Query: 451 QLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC--------GDR 494
QLA L+ LP PAL K R WT Q+ ++ P DS G
Sbjct: 592 QLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDSQVRLNMVNKGRN 649
Query: 495 YL-------------IKKSEVLKGDFDRDTIPSVINEIVTSI----FFEKGPEEVLEFFD 537
Y I+ SE++ G D+ T+ S + + + F E + +
Sbjct: 650 YTRNKDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLA 709
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY-------------SLLYHRM 584
+ ++N GFS + D + SK L + + + Y +L
Sbjct: 710 RIASYFLQN---RGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPG 766
Query: 585 STQNELVDLQIENHIRHVKMLVAK--FILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGL 640
T E ++ + + ++ AK F T LI + S S S + Q +G
Sbjct: 767 CTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVG- 825
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK HFER + P A+ G ++ F+ GL P E H+++ R
Sbjct: 826 QQAISGKRVPNGFENRALPHFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGR 880
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP 760
E +V ++ +E G L + L+ L D+V+ YDGTVRN N ++ Y + S+
Sbjct: 881 EGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMET 939
Query: 761 AGEPVGVL 768
+PV ++
Sbjct: 940 RNKPVDLV 947
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 30 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 89
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 90 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 122
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 174/729 (23%), Positives = 298/729 (40%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P ++ L + A + D +++ + E+LK I +E L F +
Sbjct: 179 YQP-NLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARP 237
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP------ 194
D ++ LPVPP + I G + DL+ + + E+IR+ ++G
Sbjct: 238 DWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISE 297
Query: 195 -----NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 298 NIKMLQFHVATLVDNDMP---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRG 344
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 345 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 404
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 405 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++
Sbjct: 465 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ F++K + MF S +P+P + K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
I ++P + S GD + +++ E++ G + T+ +
Sbjct: 583 IFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
++ E G E F+ ++Q ++ L +G S+ + D IQK I+
Sbjct: 643 SLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAK 702
Query: 578 SLLY------HRM---STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
+ H M T + EN + + K + + + L ++
Sbjct: 703 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 762
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 763 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 816
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 817 NSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 876
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 877 Q-LIQLRYG 884
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDTQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 196/783 (25%), Positives = 327/783 (41%), Gaps = 84/783 (10%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNP 776
L+ + V++ YD TVRN N ++Q Y + AGE V LA SN
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL-------AGESVEFQNLATLKPSNK 914
Query: 777 AYK 779
A++
Sbjct: 915 AFE 917
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 207/872 (23%), Positives = 355/872 (40%), Gaps = 175/872 (20%)
Query: 13 QIVGIRFGLATQKEICTASIS--------DCSISHASQLANPFLGLPLEFGKCESCGTSE 64
QI I+FGL + E+ S++ + + L + +G C+SCG +
Sbjct: 9 QIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCG-GD 67
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM-----YAFQLQIKNDGVAQRLLS------- 112
C GHFG+IEL P++H +IS++K + Y +++I G+ L +
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKSTLSNVWGMSKG 127
Query: 113 -SCCE---------------------------------------------VKEMLKRIPE 126
S CE V + K+I +
Sbjct: 128 RSVCEGEVLDNGRSGCGNKQPVIKREGLTLVAFMKGEESNEGKVMLNGERVYSIFKKISD 187
Query: 127 ETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEI 185
E + Y + IL L VPP + + +G DL+ + + +
Sbjct: 188 EDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYL 247
Query: 186 IRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAW 243
+ + G P ++ E LQ V +++ + G ++ + S P + A
Sbjct: 248 KKYEQEGAPGHIVRDYEQL-LQFHVATFIDNDIGGLPQALQK-------SGRPLKSLSAR 299
Query: 244 LE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
L+ ++R + K FS+R+VIT D + E+GVP EIA+ TF E+V NI+ L
Sbjct: 300 LKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRL 359
Query: 300 QELVDNKLCLTYSDGSSSYSLR-EGSK-------GHTFLRPGQVVHRRIMDGDTVFINRP 351
++LV ++Y LR +G K L G VV R + GD V NR
Sbjct: 360 EKLVR---AGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVERHMQSGDVVLFNRQ 416
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ HK S+ A V + T ++N + P +ADFDGD ++L PQS +KAE+ EL V
Sbjct: 417 PSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALV 476
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFA-------------- 456
+Q++S + + + D L L++ + FL++ L ++A
Sbjct: 477 SRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSL-LYAVNLEFCDIPLGDAV 535
Query: 457 ------------LSPLPRPALSKARCSARWTALQILQSVLPP----GFDS---------C 491
+ L +PA++K WT Q+L VLP G S
Sbjct: 536 QTGLRKGKDYDIMKILRKPAIAKP--MRLWTGKQVLSFVLPNLNYIGLSSEHDDDDKENI 593
Query: 492 GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
GD R +I+ + G D+ + +V IF + GP+ +FFD +Q ++ N F
Sbjct: 594 GDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGVQRMI--NAFMT 651
Query: 551 G---FSVSLED-------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL------- 593
G FS+ + D + ++A+ ++E+ AL + QN L L
Sbjct: 652 GIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIE-----NARQNRLERLPGMTMKE 706
Query: 594 QIENHI-------RHVKMLVAKFIL-KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
E+H+ R V A+ L +++ + ++ + S + + Q +G Q +
Sbjct: 707 SFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVG-QQNVE 765
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
GK HF + +Y G ++ + GLDP E H++ RE ++
Sbjct: 766 GKRIPFGFSHRTLPHF-----VKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLID 820
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ +E G + + L+ L D ++ D +VR+
Sbjct: 821 TAIKTAETGYIQRRLVKALEDAIVRQDESVRS 852
>gi|448731185|ref|ZP_21713488.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
gi|445792779|gb|EMA43380.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
Length = 984
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 175/690 (25%), Positives = 294/690 (42%), Gaps = 81/690 (11%)
Query: 115 CEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDIS-DGVSTMSS 169
++++ + IP+E +A G P+ + IL LPVPP + P I+ D
Sbjct: 250 SDIRDWFEAIPDE---DVAVLGIDPERSRPEWMILTVLPVPP-VTARPSITLDNGQRSED 305
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ ++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 306 DLTHKLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH--- 361
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P T L+ + R K FS+R+VI+ D +NE+GVP +A
Sbjct: 362 ----RSGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPERVAS 417
Query: 284 RITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKG-HTFLRPGQV 335
+T VN NI ++ V N + DG L + + + PG
Sbjct: 418 EMTQTMNVNERNIEEARQYVRNGAETHPGANRVIRPDGKVMKILDQAKEELAERIEPGWQ 477
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR P+ H+ S+ A V V T ++N ++C P +ADFDGD +++
Sbjct: 478 VQRHLSDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHA 537
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--------YFLDKA 447
Q+ A+AE L V++Q+LS G + D + ++ F +
Sbjct: 538 LQNEEARAEARVLMRVQEQILSPKMGENIIGAIQDHISGTYLLTHDDPETGGLPRFNETQ 597
Query: 448 FTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKKSEV 502
L A+ LP P + WT I +LP G D S GD +I+ ++
Sbjct: 598 ALDLLRATAVDGLPDPD-GEEDGKPYWTGRTIFSELLPGGLDLEFSSSTGDTVVIEDGQL 656
Query: 503 LKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
++G D D + + E+V SI + G + + L M + GFS+ ++D S+
Sbjct: 657 IEGTVDEDAVGAFGGEVVDSIVKKHGETRARVLINEVASLAMRAIMHFGFSIGIDDESIP 716
Query: 563 KAALWNIQKEIQALYSLLYHRMST--QNELVDLQIENHIRHVKMLVAKFILKSSTLGYLI 620
AA I + I Y + ++T +EL L ++M + + TLG
Sbjct: 717 AAAETQIDESIDNAYERIDELITTYENDELESLPGRTVDETLEMKIMQ------TLGKAR 770
Query: 621 DSKSDSA---------------------VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
DS D A + + Q A +G Q RG+ ++ + S
Sbjct: 771 DSAGDIAEDHFAEDNPAVVMAESGARGSMLNLTQMAACVGQQAV-RGERINRGYEDRTLS 829
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
H++ P DL+ +G ++ + GL P E H++ RE +V ++ S+ G L +
Sbjct: 830 HYK---PDDLS--AEAHGFVEHSYRGGLTPREFFFHAMGGREGLVDTAVRTSKSGYLQRR 884
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L ++ YDGTVR+ N I+QF++
Sbjct: 885 LINALSELETQYDGTVRDTNDN-IVQFEFG 913
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 205/875 (23%), Positives = 353/875 (40%), Gaps = 181/875 (20%)
Query: 13 QIVGIRFGLATQKEICTASIS--------DCSISHASQLANPFLGLPLEFGKCESCGTSE 64
QI I+FGL + E+ S++ + + L + +G C+SCG +
Sbjct: 9 QIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCG-GD 67
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM-----YAFQLQIKNDGVAQRLLS------- 112
C GHFG+IEL P++H +IS++K + Y +++I G+ L +
Sbjct: 68 NFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKSTLSNVWGMSKG 127
Query: 113 -SCCE---------------------------------------------VKEMLKRIPE 126
S CE V + K+I +
Sbjct: 128 RSVCEGEVLDNGRSGCGNKQPVIKREGLTLVAFMKGEESNEGKVMLNGERVYSIFKKISD 187
Query: 127 ETRKKLAGK-GYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEI 185
E + Y + IL L VPP + + +G DL+ + + +
Sbjct: 188 EDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYL 247
Query: 186 IRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTAKSSRDVDARFGVSQDP 236
+ + G P ++ E LQ V +++ ++ + + + + AR
Sbjct: 248 KKYEQEGAPGHIVRDYEQL-LQFHVATFIDNDIGGLPQALQKSGRPLKSLSARL------ 300
Query: 237 NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
K ++R + K FS+R+VIT D + E+GVP EIA+ TF E+V NI
Sbjct: 301 ----KGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNI 356
Query: 297 NYLQELVDNKLCLTYSDGSSSYSLR-EGSK-------GHTFLRPGQVVHRRIMDGDTVFI 348
+ L++LV ++Y LR +G K L G VV R + GD V
Sbjct: 357 DRLEKLVR---AGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVERHMQSGDVVLF 413
Query: 349 NRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLEL 408
NR P+ HK S+ A V + T ++N + P +ADFDGD ++L PQS +KAE+ EL
Sbjct: 414 NRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEEL 473
Query: 409 FSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFA----------- 456
V +Q++S + + + D L L++ + FL++ L ++A
Sbjct: 474 ALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSL-LYAVNLEFCDIPLG 532
Query: 457 ---------------LSPLPRPALSKARCSARWTALQILQSVLPP----GFDS------- 490
+ L +PA++K WT Q+L VLP G S
Sbjct: 533 DAVQTGLRKGKDYDIMKILRKPAIAKP--MRLWTGKQVLSFVLPNLNYIGLSSEHDDDDK 590
Query: 491 --CGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
GD R +I+ + G D+ + +V IF + GP+ +FFD +Q ++ N
Sbjct: 591 ENIGDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGVQRMI--NA 648
Query: 548 FADG---FSVSLED-------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL---- 593
F G FS+ + D + ++A+ ++E+ AL + QN L L
Sbjct: 649 FMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIE-----NARQNRLERLPGMT 703
Query: 594 ---QIENHI-------RHVKMLVAKFIL-KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
E+H+ R V A+ L +++ + ++ + S + + Q +G Q
Sbjct: 704 MKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVG-QQ 762
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
+ GK HF + +Y G ++ + GLDP E H++ RE
Sbjct: 763 NVEGKRIPFGFSHRTLPHF-----VKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREG 817
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRN 737
++ ++ +E G + + L+ L D ++ D +VR+
Sbjct: 818 LIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRS 852
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 171/728 (23%), Positives = 313/728 (42%), Gaps = 81/728 (11%)
Query: 82 YHPSHISELKLTMYA-FQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
Y PS+ + + + A ++ + D ++++ + V E K+I +E + F +
Sbjct: 180 YQPSY-RRVGIDINAEWKKNVNEDTQERKIMLTAERVLETFKQITDEDILVIGMDPQFAR 238
Query: 141 DGYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
+++ LPVPP + ++ G + DL+ + + ++ R+ +G +
Sbjct: 239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGA----AA 294
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
V ++D++L QY + P + K L+ ++R + K
Sbjct: 295 HVLTDDVRLL--QYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV N+ Y
Sbjct: 353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--G 409
Query: 316 SSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ Y +RE L+PG V R + DGD + NR PT HK S+ V
Sbjct: 410 AKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVK 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQSL +AE+ E+ V +QL++ +
Sbjct: 470 ILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVM 529
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D L ++++M K+ F+D +F L M+ + +P+PA+ K + WT Q+
Sbjct: 530 GIVQDTLCAVRMMTKRDIFIDWSFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFS 587
Query: 482 SVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
++P + S GD + LI+ E+L G T+ ++
Sbjct: 588 LIIPGNVNVLRTHSTHPDSEDAGPYKWISPGDTKVLIEHGELLTGIVCSKTVGKSAGNLL 647
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QAL 576
+ E G E F+ +Q ++ L +G ++ + D + +IQ I Q +
Sbjct: 648 HVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQETYRDIQDTIRKAKQDV 707
Query: 577 YSLLYH--------------RMSTQNELVDLQIENHIR-HVKMLVAKFILKSSTLGYLID 621
++ R + +N++ QI N R K + + + ++
Sbjct: 708 VDIIEKAHNDDLEPTPGNTLRQTFENKVN--QILNDARDRTGSSAQKSLSEFNNFKSMVV 765
Query: 622 SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKG 681
S S + + Q +G Q + GK HF + +Y G ++
Sbjct: 766 SGSKGSKINISQVIACVG-QQNVEGKRIPFGFRHRTLPHF-----IKDDYGPESKGFVEN 819
Query: 682 CFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSN 741
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +
Sbjct: 820 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQ 879
Query: 742 SIIQFDYA 749
++Q Y
Sbjct: 880 -MVQLRYG 886
>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
Length = 1390
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 195/715 (27%), Positives = 303/715 (42%), Gaps = 90/715 (12%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRIPEETRKKLA--GKGYFPQDGYILEYLPVPPNCLSVPDI 160
N V+Q L + +V ++ +RIP+ LA + P+D I + VPP + +
Sbjct: 221 NSAVSQIL--TPIDVLKLFERIPQSDIPLLAMDSRRSQPKD-LIFTRMLVPPVSIRPSVV 277
Query: 161 SD-GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVR 217
SD T DL++ + + I + SG QE + LQL Y+ E+
Sbjct: 278 SDLKAGTNEDDLTMRQSEIIFINDVIKKHKLSGASVNMYQE-GWDFLQLQTALYINSELS 336
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
G + G+ Q K + R K FSSR+VI+ D +++++GV
Sbjct: 337 GIPLAMMPKKPGRGLVQ----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIDQVGV 392
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG--SSSYSLREGSKGHTFLRPGQ- 334
P IA+ +TF ERV NI+ +++LV N D ++Y ++GS FL+ G
Sbjct: 393 PLHIAKILTFPERVIHANIDVMRQLVING-----PDKWPGANYVQQKGSAFKKFLKYGNR 447
Query: 335 -----------VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
+V R + + D V NR P+ HK S+ A VH T + N +C P +
Sbjct: 448 EKLAQELKLGDLVERHLHNDDVVLFNRQPSLHKLSIMAHRTKVHQHRTFRFNECVCNPYN 507
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-Y 442
ADFDGD ++L PQ+ AKAE L L + L++ NG L + D L ++ KK
Sbjct: 508 ADFDGDEMNLHLPQTEEAKAEALILMGNKNNLVTPRNGELLIAATQDFLTGGYLLTKKDT 567
Query: 443 FLDKAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPP-------- 486
FLD A QLA L+ LP P + K R W+ QI + P
Sbjct: 568 FLDLAHASQLAATLLAENDTNMQIDLPTPCILKPR--RLWSGKQICSLIFRPNKKCPVKA 625
Query: 487 GFDSCGDRY-------------LIKKSEVLKGDFDRDTIPS--VINEIVTSIFFEKGPEE 531
++ G Y LI+ SE++ G D+ + S N I I + G E
Sbjct: 626 NLEAKGKAYTKNRELCVKDSYVLIRNSELIAGTLDKSHLGSGGKGNNIFYVILRDFGSEY 685
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS--------LLYHR 583
++ L L L GFS+ + D + SK L K ++ Y+ + R
Sbjct: 686 AIKSMWRLAKLTSYYLMNSGFSIGIGDVTPSKGLLRRKNKLLEDGYTKCDEYIRQMADGR 745
Query: 584 MSTQN--------ELVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQ 634
+ Q E V L+ + IR H + +++ + S S + + Q
Sbjct: 746 LQCQPGCTAEETLEAVILKELSVIREHAGQACLAELHPTNSPLIMALSGSKGSFINISQM 805
Query: 635 AGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMT 694
+G Q + GK HF P P AK G ++ F+ GL P E
Sbjct: 806 IACVGQQALN-GKRVPDGFENRSLPHF----PHHSKTPEAK-GFVENSFYTGLTPTEFFF 859
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE +V ++ +E G + + L+ L D+V+ YDG+VRN I+Q +Y
Sbjct: 860 HTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLVVHYDGSVRN-AEGDIVQVNYG 913
>gi|116201487|ref|XP_001226555.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
gi|88177146|gb|EAQ84614.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
Length = 1290
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 191/722 (26%), Positives = 304/722 (42%), Gaps = 88/722 (12%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT--PNFES 198
D ++ +YLP PP C+ P ++ ++ D++ + + +L + S + G P
Sbjct: 133 DMFLWQYLPAPPICIR-PSVAQENASNEDDITSKLSEIILYAGHLRESLKKGVALPVIME 191
Query: 199 QEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGS 256
Q LQL VG Y+ +V G + R G Q K + R K
Sbjct: 192 Q---WEFLQLQVGMYVNSDVPGLYQPGFGKPIR-GFCQ----RLKGKQGRFRGNLSGKRV 243
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV-------DNKLCL 309
FS R+VI+ D + ++ VP +A+ +T+ ERVN NI L+E V +
Sbjct: 244 DFSGRTVISPDPNLSIEQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNIWPGAQGI 303
Query: 310 TYSDGSSSYSLREGS-----KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSV 364
DG+ Y+L+ G+ K L G VV R + D D V NR P+ HK S+ +
Sbjct: 304 IKKDGAK-YNLKIGNESLREKHANNLEHGDVVERHLEDNDVVLFNRQPSLHKLSIMSHLA 362
Query: 365 YVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLN 424
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ L++ NG
Sbjct: 363 KIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLVTPKNGEPI 422
Query: 425 LQLATDALLSLKVMFKK-YFLDKAF-----TQQLAMFALSPLPRPALSKARCSARWTALQ 478
+ D + + ++ K F D+A TQ L LP PA+ K R A WT Q
Sbjct: 423 IAATQDFITAAYLLSSKDIFFDRASFTYVCTQMLLGDTHLELPPPAIIKPR--ALWTGKQ 480
Query: 479 ILQSVLPPGFDS-------------------------CGDRYL-IKKSEVLKGDFDRDTI 512
I ++ P +S D +L ++ SEV+ G D+ T+
Sbjct: 481 IFNVLMRPNKESPVLVNLEAKNKVFFKKKDGQIPDMDIDDAFLVVRNSEVMCGRMDKATV 540
Query: 513 -PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQK 571
N + I + GP+ + L L L GFS+ + D S + + +
Sbjct: 541 GGGKKNSVFYVILRDFGPDHAAVAMNRLSKLCARTLSLRGFSIGVGDVWPSGSLTSHKAQ 600
Query: 572 EIQALYSLLYHRMST--QNEL-------VDLQIENHI----RHVKMLVAKFILK--SSTL 616
++ Y+ + T Q +L ++ +EN I V+ + + S
Sbjct: 601 LVEDAYNKCDDLIETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGNYCVGNLSKNN 660
Query: 617 GYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTA 674
LI +KS S S V Q +G Q+ GK + HF + + P +
Sbjct: 661 APLIMAKSGSKGSDINVAQMVACVGQQIIG-GKRVPDGFQDRSLPHFHK----NARQPPS 715
Query: 675 KYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGT 734
K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L D+ YD T
Sbjct: 716 K-GFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT 774
Query: 735 VRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWEL 794
VR I+QF Y + + +PV T N A +S +S WE+
Sbjct: 775 VR-TSEGGIVQFQYGADRLDPVDMEGDAKPVDF---TRTWNHAQSITWSNSDTSLLPWEI 830
Query: 795 MK 796
K
Sbjct: 831 QK 832
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 159 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 212
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 213 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 272
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 273 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 324
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 325 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 384
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 385 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 444
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 445 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 504
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 505 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 564
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 565 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 622
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 623 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 682
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 683 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 742
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 743 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 796
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 797 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 856
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 857 MVNYDGTVRNSVGQ-LIQLRYG 877
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGLPLEFGKCESCGT 62
Q+ ++FG+ + EI S+++ + A L +P G+ +C++C
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLK 122
+ +C GHFG+I+L P++H I++ + V+ R ++KE++
Sbjct: 66 NM-TECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPR----NPKIKEIVM 120
Query: 123 RIPEETRKKLA 133
+ + RK+LA
Sbjct: 121 KSKGQPRKRLA 131
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 159 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 212
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 213 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 272
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 273 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 324
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 325 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 384
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 385 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 444
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 445 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 504
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 505 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 564
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 565 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIT 622
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 623 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 682
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 683 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 742
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 743 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 796
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 797 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 856
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 857 MVNYDGTVRNSVGQ-LIQLRYG 877
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGLPLEFGKCESCGT 62
Q+ ++FG+ + EI S+++ + A L +P G+ +C++C
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISE 89
+ +C GHFG+I+L P++H I++
Sbjct: 66 NM-TECPGHFGHIDLAKPVFHIGFITK 91
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 172/663 (25%), Positives = 291/663 (43%), Gaps = 62/663 (9%)
Query: 137 YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNF 196
Y D I + +PVPP + ++ G + DL+ + V ++ R+ +G
Sbjct: 234 YARPDWMIAQVIPVPPLTVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGA--- 290
Query: 197 ESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFI 252
+ V + D++L QY S + A P + K L+ ++R +
Sbjct: 291 -AAHVLAEDVKLL--QYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLM 347
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R+VIT D ++ +GVP IAQ +TF E V NI+ LQELV N+ Y
Sbjct: 348 GKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELV-NRGDSQYP 406
Query: 313 DGSSSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ Y +RE G++ L+PG V R + DGD + NR PT HK S+
Sbjct: 407 --GAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V + T ++N + P +ADFDGD ++L PQSL KAEV E+ V +QL++
Sbjct: 465 KVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L ++++M K+ F++ L M + +P+PA+ K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +I+ E+L G TI
Sbjct: 583 VFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QAL 576
++ + E G E F+ +Q ++ L A+G ++ + D +A +IQ+ I +A
Sbjct: 643 NLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAK 702
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQ 633
++ N+ ++ N +R + IL + T G S S+ K +
Sbjct: 703 LDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMV 762
Query: 634 QAGFLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHG 686
AG G + +S + VE F R P + +Y G ++ + G
Sbjct: 763 VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 822
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN ++Q
Sbjct: 823 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQ-LVQL 881
Query: 747 DYA 749
Y
Sbjct: 882 RYG 884
Score = 47.4 bits (111), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
++FG+ + EI SI + S + P LG ++ G+C +C S C
Sbjct: 18 VQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSL-ADC 76
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHF +IEL P++H +S+ LKL Y +L + D VKE+LK+
Sbjct: 77 PGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKD---------SPRVKELLKK 127
Query: 124 IPEETRKKL 132
R++L
Sbjct: 128 TAGNARRRL 136
>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
Length = 886
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 214/884 (24%), Positives = 354/884 (40%), Gaps = 171/884 (19%)
Query: 8 TILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGK----------- 56
T + +I I+FG+ + +EI S++ S G P++ G
Sbjct: 3 TPIPTRISAIKFGILSPEEIRKMSVTTIITSEVYDND----GAPIDGGVMDRRLGAIEPR 58
Query: 57 --CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF-----QLQIKNDGVAQ- 108
C CG + C GHFG+IEL P+ H S + + + + +++IK + +
Sbjct: 59 EVCPVCGNTRES-CPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERKKY 117
Query: 109 -RLLSSCCEV--KEMLKRIPEETRKKLAGKGYFP----------------------QDGY 143
LL+S E+ ++KR+ E R+K A P ++GY
Sbjct: 118 LELLNSLKELGLDYLVKRLHEYIRRKAAATQRCPHCGAKQYKIRLEKPHTFYEDRGEEGY 177
Query: 144 I-----------------------------------LEYLPVPPNCLSVPDISDGVSTMS 168
+ L LPVPP + P I S
Sbjct: 178 VKLNPIEVRARLEKILDEDVRLLGGDPVDARPEWMVLTVLPVPPRSVR-PSILLETGIRS 236
Query: 169 SDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGTA---KSSR 224
D L +++ +R SG PN ++ E LQ V Y + R
Sbjct: 237 EDDLTHKLVDIIRINNRLREHIESGAPNAIIED-EWELLQYHVTTYFDNEAPGIPVARHR 295
Query: 225 DVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
G++Q + +R K FS+R+VI+ D +NE+GVP +A+
Sbjct: 296 SGKVLKGLAQRLKGKEGRFRGNLRG----KRVDFSARTVISPDPNLSINEVGVPEVVAKI 351
Query: 285 ITFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGH 327
+T ERV NI ++ LV N ++ L Y D +
Sbjct: 352 LTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIRPDGRRISLKYVDRKAMAET------- 404
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L PG +V R + DGD V NR P+ H+ S+ A V V T ++N L+C P +ADFD
Sbjct: 405 --LAPGFIVERHLRDGDIVLFNRQPSLHRISIMAHVVRVLPYKTFRLNLLVCPPYNADFD 462
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDK 446
GD ++L PQS A+AE L VEK +L+ G + D + + + K L +
Sbjct: 463 GDEMNLHVPQSEEARAEARMLMLVEKHILTPRYGGPIIGGLQDYISGAFLLTSKSTLLTR 522
Query: 447 AFTQQLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFD-------------SC 491
+L A LP PA+ K + WT Q++ LP F+ C
Sbjct: 523 EDVIELLGVAGYRGKLPEPAILKPK--QYWTGKQLISLFLPDDFNYKRPAKIAGATALRC 580
Query: 492 GDR-------YLIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLL 543
D ++K +L+G D+ +I E ++ + E G + F D + +
Sbjct: 581 IDEDCPHDSLVIVKNGVLLEGVLDKASIGREEPESLIHWLVKEYGEDIARLFMDYVYKMF 640
Query: 544 MENLFADGFSVSLEDFSL----SKAALWNIQKEIQALYSLL--YHR------------MS 585
+ GF++ L K L I+++ + +Y L+ Y R +
Sbjct: 641 LRFAEKYGFTMGYSHLLLPPEAKKRVLEVIEEKKKEVYELIEKYRRGELEPRPGRTIEET 700
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
++E++DL + + V + + S+ + + + + + Q A LG Q + R
Sbjct: 701 LEDEIIDLLSKKLLDDVADTIIPYFKLSNPVIIMARTGARGNPVNLTQMAALLG-QQTIR 759
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G+ ++ + HF+ P DL P A+ G + F GL+P E H+ + RE +
Sbjct: 760 GRRITRGYMHRTLPHFK---PGDLG-PEAR-GFVAHGFVDGLNPIEVFFHAAAGREGLTD 814
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ S+ G + + L+ L+D+ + YDGTVR + + IIQF Y
Sbjct: 815 TAVRTSQSGYMQRRLINALQDLRVEYDGTVR-LPTGEIIQFAYG 857
>gi|157741560|gb|ABV69485.1| RNA polymerase II largest subunit, partial [Hydropunctaria
adriatica]
Length = 988
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 158/646 (24%), Positives = 283/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 176 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 229
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 230 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++ V N + + Y +RE ++ L+ G
Sbjct: 290 TYPETVTQFNISRLKQFVTNGPEM---HPGARYIIREHNERIDLRYHKNTAEITLKTGWK 346
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 347 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 400 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIML 459
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 460 WVPDWDGVIPQPAIVKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPAERFAPAGDS 517
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ ++F E G E + FF+ Q L+ L +GFS
Sbjct: 518 GLFVADGKLMFGLFNKKSVGTGSNGIIHTVFNEFGHEAAMAFFNGAQTLVNYWLLHNGFS 577
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 578 IGIGDTVPDVGTVEKIKSEVDRKKTEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 637
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 638 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 690
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 691 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 738
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 739 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 783
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 181/712 (25%), Positives = 305/712 (42%), Gaps = 110/712 (15%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
KG P+ YI YLP PP C+ P + + DL++ L +++ +IR+
Sbjct: 247 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSMIRAGIVKG 303
Query: 194 PNFESQEVESNDLQLAVGQYLEVR----------GTAKSSRDVDARFGVSQDPNSTTKAW 243
+ + + + LQL+V Y+ G AKSS+ + A K
Sbjct: 304 ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFC-------QRLKGK 356
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+L+
Sbjct: 357 QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLI 416
Query: 304 DNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRP 351
N + ++Y +++ G LR G +V R I DGD V NR
Sbjct: 417 VNGPDI---HPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDIVERHIEDGDVVLFNRQ 473
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V
Sbjct: 474 PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 533
Query: 412 EKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPAL 465
+ LL+ +G + D + S + K F D+A Q L+M + + +P P +
Sbjct: 534 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTI 593
Query: 466 SKARCSARWTALQILQSVLPP--------GFDSCGDRY------------------LIKK 499
K WT Q+ ++ P D+ + +I+
Sbjct: 594 FKP--VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRG 651
Query: 500 SEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
S++L G D+ T+ + + +I + GPEE + + L L GFS+ + D
Sbjct: 652 SKILSGLMDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGNRGFSIGIND 711
Query: 559 FSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------- 598
+ + + ++ Y LY+R + TQ NE L+ +
Sbjct: 712 VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771
Query: 599 -----IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
IR + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 772 VGDVCIRELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL 827
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E
Sbjct: 828 -----PHFTK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAET 877
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF Y + + + +PV
Sbjct: 878 GYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPV 928
>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
Length = 1410
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 189/728 (25%), Positives = 311/728 (42%), Gaps = 105/728 (14%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISD-GVSTMSSDL 171
V ++ ++IP+ + +A G D + I+ + VPP C+ +S+ T DL
Sbjct: 249 VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDL 305
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 306 TMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIP--------- 355
Query: 230 FGVSQDPNSTTKAWLEKM-------RTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P TT+ ++++ R K FS R+VI+ D +N++GVP +A
Sbjct: 356 --INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVA 413
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL------TYSDGSS-----SYSLREGSKGHTFLR 331
+ +T+ ERVN NI +++ELV N + GSS +Y RE K L+
Sbjct: 414 KILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVAQELK 471
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G VV R + DGD V NR P+ HK S+ V T + N C P +ADFDGD +
Sbjct: 472 CGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEM 531
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQ+ A+AE L L + L++ NG + + D + ++ +K FL K
Sbjct: 532 NLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAM 591
Query: 451 QLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDS------------ 490
QLA L+ LP PAL K R WT Q+ ++ P DS
Sbjct: 592 QLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDSQVRLNMVNKSRN 649
Query: 491 --------CGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSI----FFEKGPEEVLEFFD 537
D ++ I+ SE++ G D+ T+ S + + + F E + +
Sbjct: 650 YTRNKDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLA 709
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY-------------SLLYHRM 584
+ ++N GFS + D + SK L + + + Y +L
Sbjct: 710 RIASYFLQN---RGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPG 766
Query: 585 STQNELVDLQIENHIRHVKMLVAK--FILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGL 640
T E ++ + + ++ AK F T LI + S S S + Q +G
Sbjct: 767 CTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVG- 825
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK HFER + P A+ G ++ F+ GL P E H+++ R
Sbjct: 826 QQAISGKRVPNGFENRALPHFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGR 880
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP 760
E +V ++ +E G L + L+ L D+V+ YDGTVRN N ++ Y + S+
Sbjct: 881 EGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMET 939
Query: 761 AGEPVGVL 768
+PV ++
Sbjct: 940 RNKPVDLV 947
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 30 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 89
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 90 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 122
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 153/634 (24%), Positives = 279/634 (44%), Gaps = 80/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPEHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L+ V N + + Y +RE + L+ G
Sbjct: 301 TYPETVTRFNISRLKAFVTNG---PEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHLMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIVKPR--PRWTGKQVISMVLPPALNLVRIDGKELQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS 613
+ + D + I++E+ + + + + + + + + + +S
Sbjct: 589 IGIGDTVPDVGTVEKIKREVD-------RKKAEVERITQMAVAEDLEALPGMNVRETFES 641
Query: 614 STLGYLIDSKSDSA---------VSKVVQ--QAGFLG--LQLSDRGKFYSKTLVEDIASH 660
L ++ ++ ++ +Q +AG G + +S + VE
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKRIP 701
Query: 661 FE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
F R P +Y A G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 702 FGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 761
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 762 IQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
Length = 1383
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 190/728 (26%), Positives = 311/728 (42%), Gaps = 105/728 (14%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISD-GVSTMSSDL 171
V ++ ++IP+ + +A G D + I+ + VPP C+ +S+ T DL
Sbjct: 222 VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDL 278
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 279 TMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIP--------- 328
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P TT+ +++++ R K FS R+VI+ D +N++GVP +A
Sbjct: 329 --INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVA 386
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL------TYSDGSS-----SYSLREGSKGHTFLR 331
+ +T+ ERVN NI +++ELV N + GSS +Y RE K L+
Sbjct: 387 KILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVAQELK 444
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G VV R + DGD V NR P+ HK S+ V T + N C P +ADFDGD +
Sbjct: 445 CGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEM 504
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQ+ A+AE L L + L++ NG + + D + ++ +K FL K
Sbjct: 505 NLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAM 564
Query: 451 QLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC--------GDR 494
QLA L+ LP PAL K R WT Q+ ++ P DS G
Sbjct: 565 QLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDSQVRLNMVNKGRN 622
Query: 495 YL-------------IKKSEVLKGDFDRDTIPSVINEIVTSI----FFEKGPEEVLEFFD 537
Y I+ SE++ G D+ T+ S + + + F E + +
Sbjct: 623 YTRNKDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLA 682
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY-------------SLLYHRM 584
+ ++N GFS + D + SK L + + + Y +L
Sbjct: 683 RIASYFLQN---RGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPG 739
Query: 585 STQNELVDLQIENHIRHVKMLVAK--FILKSSTLGYLIDSKSDSAVS--KVVQQAGFLGL 640
T E ++ + + ++ AK F T LI + S S S + Q +G
Sbjct: 740 CTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVG- 798
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK HFER + P A+ G ++ F+ GL P E H+++ R
Sbjct: 799 QQAISGKRVPNGFENRALPHFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGR 853
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP 760
E +V ++ +E G L + L+ L D+V+ YDGTVRN N ++ Y + S+
Sbjct: 854 EGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMET 912
Query: 761 AGEPVGVL 768
+PV ++
Sbjct: 913 RNKPVDLV 920
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 62
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 63 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 95
>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
rhizinosum]
Length = 999
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 282/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L++LV N + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKQLVTNG---PEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS +AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N +V +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVSDGELMFGLFNKKSVGTGSNGVVHTIFNEFGHETAMAFFNGAQAVINYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDIGTVEKIKLEVDRKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDATVRDSRGN-IVQFIYG 794
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 172/663 (25%), Positives = 291/663 (43%), Gaps = 62/663 (9%)
Query: 137 YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNF 196
Y D I + +PVPP + ++ G + DL+ + V ++ R+ +G
Sbjct: 234 YARPDWMIAQVIPVPPLTVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGA--- 290
Query: 197 ESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFI 252
+ V + D++L QY S + A P + K L+ ++R +
Sbjct: 291 -AAHVLAEDVKLL--QYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLM 347
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS 312
K FS+R+VIT D ++ +GVP IAQ +TF E V NI+ LQELV N+ Y
Sbjct: 348 GKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELV-NRGDSQYP 406
Query: 313 DGSSSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ Y +RE G++ L+PG V R + DGD + NR PT HK S+
Sbjct: 407 --GAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 464
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V + T ++N + P +ADFDGD ++L PQSL KAEV E+ V +QL++
Sbjct: 465 KVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANK 524
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQ 478
+ + D L ++++M K+ F++ L M + +P+PA+ K + WT Q
Sbjct: 525 PVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPK--PLWTGKQ 582
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +I+ E+L G TI
Sbjct: 583 VFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAG 642
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QAL 576
++ + E G E F+ +Q ++ L A+G ++ + D +A +IQ+ I +A
Sbjct: 643 NLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAK 702
Query: 577 YSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQ 633
++ N+ ++ N +R + IL + T G S S+ K +
Sbjct: 703 LDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMV 762
Query: 634 QAGFLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHG 686
AG G + +S + VE F R P + +Y G ++ + G
Sbjct: 763 VAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 822
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
L P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN ++Q
Sbjct: 823 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQ-LVQL 881
Query: 747 DYA 749
Y
Sbjct: 882 RYG 884
Score = 47.0 bits (110), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
++FG+ + EI SI + S + P LG ++ G+C +C S C
Sbjct: 18 VQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSL-ADC 76
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHF +IEL P++H +S+ LKL Y +L + D VKE+LK+
Sbjct: 77 PGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKD---------SPRVKELLKK 127
Query: 124 IPEETRKKL 132
R++L
Sbjct: 128 TAGNARRRL 136
>gi|146415288|ref|XP_001483614.1| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 179/691 (25%), Positives = 304/691 (43%), Gaps = 97/691 (14%)
Query: 133 AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSG 192
A +G P+ YI YLP PP C+ P + D+++ L +++ +I++
Sbjct: 176 ASRGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQLNEDDITVK-LTEIVWTSSLIKAGIEK 232
Query: 193 TPNFESQEVESNDLQLAVGQYLE-----------VRGTAKSSRDVDARFGVSQDPNSTTK 241
+ + + + LQL+V Y+ + G AKS++ + G Q K
Sbjct: 233 GISINNLMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIR---GFCQ----RLK 285
Query: 242 AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQE 301
+ R K FS+R+VI+ D R++E+ VP +A+ +T+ E+ +N LQ+
Sbjct: 286 GKQGRFRGNLSGKRVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQ 345
Query: 302 LVDNKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPP 352
L+ N + + ++ +LR G K L G VV R I DGD V NR P
Sbjct: 346 LILNGPDVHPGANYVMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQP 405
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 406 SLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVK 465
Query: 413 KQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALS 466
LL+ +G + D + S + K F D+A F Q L+M + + L P P +
Sbjct: 466 NNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLLSMMSDADLQFDLPPPTIF 525
Query: 467 KARCSARWTALQILQSVLPPGFDSC-------------------------GDRY-LIKKS 500
K WT Q+ ++ P +S D Y +I+ S
Sbjct: 526 KP--VMLWTGKQVFSLLMKPNKNSNVIVNLDAKNKAFTPPAPGYPNEMSPNDGYVIIRGS 583
Query: 501 EVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
+VL G D+ T+ + + +I + GP+ E + + L L GFS+ + D
Sbjct: 584 QVLSGVMDKLTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDV 643
Query: 560 S----LSKAALWNIQKEIQALYSL--LYHR--MSTQ-----NELVDLQIENHIRHVKMLV 606
+ L + +++ L LY+R + TQ + ++ +I + V+ V
Sbjct: 644 TPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQV 703
Query: 607 AKFI---LKSSTLGYLIDS-KSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIA 658
+ L S+ ++ + S + V Q +G Q+ + F ++L
Sbjct: 704 GEVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL----- 758
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + +
Sbjct: 759 PHFTK----NSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSR 813
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
LM L D+ YD TVRN SN I+QF Y
Sbjct: 814 RLMKSLEDLSAQYDNTVRN-SSNGIVQFTYG 843
>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
Length = 1390
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 201/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NI++L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/712 (25%), Positives = 305/712 (42%), Gaps = 110/712 (15%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
KG P+ YI YLP PP C+ P + + DL++ L +++ +IR+
Sbjct: 247 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSMIRAGIVKG 303
Query: 194 PNFESQEVESNDLQLAVGQYLEVR----------GTAKSSRDVDARFGVSQDPNSTTKAW 243
+ + + + LQL+V Y+ G AKSS+ + A K
Sbjct: 304 ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFC-------QRLKGK 356
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+LV
Sbjct: 357 QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLV 416
Query: 304 DNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRP 351
N + ++Y +++ G LR G VV R I DGD V NR
Sbjct: 417 VNGPDI---HPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQ 473
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V
Sbjct: 474 PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 533
Query: 412 EKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPAL 465
+ LL+ +G + D + S + K F D+A Q L+M + + +P P +
Sbjct: 534 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTI 593
Query: 466 SKARCSARWTALQILQSVLPP--------GFDSCGDRY------------------LIKK 499
K WT Q+ ++ P D+ + +I+
Sbjct: 594 FKP--VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRG 651
Query: 500 SEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
S++L G D+ T+ + + +I + GP+E + + L L GFS+ + D
Sbjct: 652 SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711
Query: 559 FSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------- 598
+ + + ++ Y LY+R + TQ NE L+ +
Sbjct: 712 VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771
Query: 599 -----IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
IR + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 772 VGDVCIRELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL 827
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E
Sbjct: 828 -----PHFTK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAET 877
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF Y + + + +PV
Sbjct: 878 GYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPV 928
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 153/634 (24%), Positives = 279/634 (44%), Gaps = 80/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPEHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L+ V N + + Y +RE + L+ G
Sbjct: 301 TYPETVTRFNISRLKAFVTNG---PEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHLMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIVKPR--PRWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS 613
+ + D + I++E+ + + + + + + + + + +S
Sbjct: 589 IGIGDTVPDVGTVEKIKREVD-------RKKAEVERITQMAVAEDLEALPGMNVRETFES 641
Query: 614 STLGYLIDSKSDSA---------VSKVVQ--QAGFLG--LQLSDRGKFYSKTLVEDIASH 660
L ++ ++ ++ +Q +AG G + +S + VE
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKRIP 701
Query: 661 FE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
F R P +Y A G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 702 FGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 761
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 762 IQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
Length = 872
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 155/631 (24%), Positives = 278/631 (44%), Gaps = 73/631 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE---------VRGTA 220
DL+ + + + + R G+P E E+ LQ V Y++ ++ T
Sbjct: 74 DLTFKLADVLKANINVQRLEMDGSPQHVISEFEAL-LQFHVATYMDNDIAGQPQALQKTG 132
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + AR K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 133 RPIKSIRARL----------KGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 182
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +++ E V +NI+ L E V N D LR + G L+ G
Sbjct: 183 IARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 242
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 243 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 302
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS +AE+ + +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 303 HVPQSPETRAELSLICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE--YDQVM 360
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSC-------GDRY 495
M P +P PA+ K + W+ Q+L +P G FD +
Sbjct: 361 NMLYWIPNWDGVIPPPAIVKPK--PLWSGKQLLSMAIPKGIHLQRFDDGTNLMSPKDNGM 418
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G + T+ + ++ ++ EKGP + F ++Q ++ L +GFS+
Sbjct: 419 LIVDGEIMFGVVTKLTVGATGGGLIHTVMREKGPYVCAQLFSAIQKVVNYWLLHNGFSIG 478
Query: 556 LEDFSLSKAALWNIQKEIQALYSLLYHRM--STQNEL-----VDL---------QIENHI 599
+ D + + IQ + + + + QN+L + L ++ N
Sbjct: 479 IGDTIADSDTMKTVTTTIQEAKNKVQEIILEAQQNKLEPEPGMTLRESFEHNVSRVLNQA 538
Query: 600 RHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ S S + + Q + +G Q+ + GK +
Sbjct: 539 RDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFADRSL 597
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 598 PHFTKD-----DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGD-IIQFVYG 682
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 189/750 (25%), Positives = 319/750 (42%), Gaps = 103/750 (13%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI YLP PP C+ P + + DL++ L +++ +IR+ + +
Sbjct: 255 YIWRYLPAPPVCIR-PSVMMDTQSNEDDLTVK-LTEIVWTSSLIRAGIEKGITINNLMEQ 312
Query: 203 SNDLQLAVGQY----------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL+V Y L G +KS++ + G Q K + R
Sbjct: 313 WDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIR---GFCQ----RLKGKQGRFRGNLS 365
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+V++ D R++E+ VP +A+ +T+ E +N LQ L+ N
Sbjct: 366 GKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + ++ +LR G K L G VV R I DGD V NR P+ H+ S+ +
Sbjct: 426 ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHF 485
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 486 AKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEP 545
Query: 424 NLQLATDALL-SLKVMFKKYFLDK-AFTQQLAMFALS----PLPRPALSKARCSARWTAL 477
+ D + S + K F D+ A Q L+M + + +P PA+ K WT
Sbjct: 546 IIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKP--VMLWTGK 603
Query: 478 QIL--------------------QSVLPP--GFD---SCGDRY-LIKKSEVLKGDFDRDT 511
QI ++ +PP GF S D + +I+ S++L G D+
Sbjct: 604 QIFSLLIRPNKNSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVMDKSL 663
Query: 512 I-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ + + +I + GP+E + + L + GFS+ + D +
Sbjct: 664 LGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIPGSELKQKKE 723
Query: 571 KEIQALYSL------LYHR--MSTQ-----NELVDLQIENHIRHVKMLVAKFILK--SST 615
++ Y LY+R + TQ + ++ +I + V+ V + +K S
Sbjct: 724 LMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGEICIKELDSA 783
Query: 616 LGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDL 669
LI + S S V Q +G Q+ + F ++L HF + +
Sbjct: 784 NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL-----PHFTK----NS 834
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 835 KTPQSK-GFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLST 893
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN 789
YD TVRN SN I+QF Y + + +PV + A+ D
Sbjct: 894 QYDNTVRN-SSNGIVQFTYGGDGLDPLDMEGDAKPVNF---NRQWDHAFNVTFDVKDRGL 949
Query: 790 NSWELMKEILLCRVSFNNDPIDRRVILYLN 819
+E++ V + +P++++++ Y N
Sbjct: 950 KPYEILNA-----VEYVLNPLEKKLVRYSN 974
>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
Length = 999
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 163/647 (25%), Positives = 285/647 (44%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++LV N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVTLFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDEFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 QVMNIMLWVPDWDGVIPQPAIVKPR--PRWTGKQMVSMVLPPALNLVRIDGKASQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVQKIKDEVDKKKAEV-ERITQSAVAEDLEALPGMNVRGTFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ ++T L D + S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 183/712 (25%), Positives = 304/712 (42%), Gaps = 106/712 (14%)
Query: 133 AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSG 192
A KG P+ YI YLP PP C+ P + + DL++ L +++ +I++ +
Sbjct: 247 ASKGGRPE-MYIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSMIKAGIAK 303
Query: 193 TPNFESQEVESNDLQLAVGQYLEVRGTAKS---------SRDVDARFGVSQDPNSTTKAW 243
+ + + + LQL+V Y+ + S+ G Q K
Sbjct: 304 GISINNLMEQWDYLQLSVAMYINSDAANPALMSGGGGGGSKSAKPIRGFCQ----RLKGK 359
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ L+
Sbjct: 360 QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLI 419
Query: 304 DNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRP 351
N + ++Y +++ G LR G VV R I DGD V NR
Sbjct: 420 INGPDV---HPGANYVMKQNEAGKRNLRFGDRVKLAKSLQIGDVVERHIEDGDVVLFNRQ 476
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ H+ S+ A V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V
Sbjct: 477 PSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 536
Query: 412 EKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPAL 465
+ LL+ +G + D + S + K F D+A Q L+M + + +P PA+
Sbjct: 537 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQFDIPPPAI 596
Query: 466 SKARCSARWTALQILQSVLPPGFD-------------------------SCGDRY-LIKK 499
K WT Q+ ++ P S D + LI+
Sbjct: 597 MKP--VMLWTGKQVFSLLIKPNRQSKVVINLNAKNKTFHPPAKGLPSEMSPNDGFVLIRG 654
Query: 500 SEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
S++L G D+ T+ + + +I + GP+E + + L L GFS+ + D
Sbjct: 655 SQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 714
Query: 559 FSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------- 598
+ + + ++ Y LY+R + TQ NE L+ +
Sbjct: 715 VTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 774
Query: 599 -----IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
IR + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 775 VGDVCIRELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL 830
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E
Sbjct: 831 -----PHFTK----NSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAET 880
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF Y + + + +PV
Sbjct: 881 GYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPV 931
>gi|429217660|ref|YP_007175650.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
gi|429134189|gb|AFZ71201.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
Length = 888
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 189/696 (27%), Positives = 308/696 (44%), Gaps = 84/696 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSV-PDISDGVSTMSSD 170
E++E L+R+ + K + G P+ +L LPVPP LSV P I+ + D
Sbjct: 188 EIRERLERVQD---KDIVVLGVDPKAARPEWMVLTVLPVPP--LSVRPSITMESGMRAED 242
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 230
L ++++Q E +++ S E LQ + Y++ ++ +
Sbjct: 243 DLTHALVEIVRQNERLKNFLSSNAPESMVEEAWQTLQNVIAAYID--------NELPNIY 294
Query: 231 GVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
+S K ++++ R K FS+R+VI+ D Y ++E+GVP EIA+
Sbjct: 295 QLSHRGRKQLKTIAQRLKGKEGRLRGNLNGKRVNFSARTVISPDPYISIDEVGVPEEIAK 354
Query: 284 RITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTF---LRPG 333
+T V +NI ++ V N + + S + LR L G
Sbjct: 355 ILTLPIVVTPYNIEEARKYVLNGPYNWPGAMFVYKSRQNMKIDLRYQRNYRQLAESLEVG 414
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
+V R +++GD V NR P+ H+ S+ A V V T ++N L C P +ADFDGD ++L
Sbjct: 415 DIVERHLLNGDIVLFNRQPSLHRMSIMAHKVRVMPGRTFRLNLLDCAPYNADFDGDEMNL 474
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKAFTQQL 452
P+ A+AE EL VEKQ+LS G + D + S + K L K L
Sbjct: 475 HVPRLEEARAEAEELMLVEKQILSPRYGGPIIGGRQDYISGSYLLTVKTNLLTKEQVSLL 534
Query: 453 AMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFDSCG------------------ 492
A +P PA+ K + WT Q++ LP G G
Sbjct: 535 LAAANYKGKMPEPAIIKPQ--PLWTGKQLVSLFLPKGLSFEGRAKINAGELKCDNERCFF 592
Query: 493 DRY-LIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
D Y +I +L G FD++ I + E ++ I E GP++ EF D++ + + L
Sbjct: 593 DSYTIISNGRLLMGVFDKNAIGAEQPENVLHYITLEYGPDKAREFLDNVFRMFIRMLEIK 652
Query: 551 GFSVSLEDFSLSKAALWNI-------QKEIQALY------SLLYHRMSTQNELVDLQIEN 597
GFS+SL++ ++K A I + EIQ + +L T E ++L+I
Sbjct: 653 GFSISLKEVEITKEAKDKIKIMVEQAKNEIQEIINNYKEGNLEVIPGRTAEESLELKIIQ 712
Query: 598 HIRHVK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
++ ++ L ++ + + + + + + Q A LG Q + RGK S+
Sbjct: 713 RLQKLRDDAGKLAISYMDPFNNAFIMARTGARGSDINITQMAAMLG-QQTVRGKRISRGF 771
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
F+ P DL+ P A+ G I F GL PYE H+ RE +V ++ S+
Sbjct: 772 RTRTLPQFK---PGDLS-PEAR-GFIISNFRLGLKPYEVFFHAAGGREGLVDTAVKTSQS 826
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ L+D+ + YDGTVR+ N I+QF Y
Sbjct: 827 GYMQRRLINALQDLYVSYDGTVRDSVGN-IVQFKYG 861
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 174/724 (24%), Positives = 300/724 (41%), Gaps = 74/724 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQD 141
Y P +I L + A D +++ S V E+LK I +E L F +
Sbjct: 182 YQP-NIRRAGLDLTAEWKHTNEDNQEKKISLSAERVWEILKHITDEECLILGMDPKFARP 240
Query: 142 GYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
++L LPVPP + + G + DL+ + + E+ R+ ++G E
Sbjct: 241 DWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELTRNEQAGAAAHIISE 300
Query: 201 VESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
LQ V +++ + G ++ + S P KA L+ ++R + K
Sbjct: 301 -NMKMLQFHVATFIDNDMPGLPRAMQK-------SGKPLKAVKARLKGKEGRIRGNLMGK 352
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------ 308
FS+R+VIT D R++++GVP IAQ +TF E + NI+ +QELV
Sbjct: 353 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAK 412
Query: 309 LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
D LR + L+ G V R I DGD V NR PT HK S+ V V
Sbjct: 413 YIIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVL 472
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++ + +
Sbjct: 473 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGI 532
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSV 483
D L +++ M K+ FLD+ + MF +P PA+ K R WT Q+ +
Sbjct: 533 VQDTLTAVRKMTKRDVFLDQEQMMNILMFLPIWDGKMPIPAILKPR--PLWTGKQVFSLI 590
Query: 484 LPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
+P + S GD + +++ E++ G + ++ + ++
Sbjct: 591 IPGNVNMIRTHSTHPDDEDDGPYKWVSPGDTKVMVEHGELIMGILCKQSLGTSAGSLLHI 650
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY- 581
E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 651 CMLELGHEVCGQFYGNIQTVINHWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIE 710
Query: 582 -----HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSD 625
H M T + EN + + K + + + L ++ + S
Sbjct: 711 VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSK 770
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q +G Q + GK + HF + +Y G ++ +
Sbjct: 771 GSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLA 824
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGT+RN +IQ
Sbjct: 825 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVG-QLIQ 883
Query: 746 FDYA 749
Y
Sbjct: 884 LRYG 887
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+++ I + L +P G+ +C++C +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIKYPETYEGGRPKIGGLMDPRQGVMDRMSRCQTCAGNM-S 74
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+I+L P+YH
Sbjct: 75 ECPGHFGHIDLAKPVYH 91
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 159 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIVVSAERVWEILKH 212
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 213 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 272
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 273 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 324
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 325 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 384
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 385 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 444
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 445 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 504
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 505 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 564
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 565 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 622
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 623 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 682
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 683 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 742
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 743 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 796
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 797 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 856
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 857 MVNYDGTVRNSVGQ-LIQLRYG 877
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGLPLEFGKCESCGT 62
Q+ ++FG+ + EI S+++ + A L +P G+ +C++C
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISE 89
+ +C GHFG+I+L P++H I++
Sbjct: 66 NM-TECPGHFGHIDLAKPVFHIGFITK 91
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 196/783 (25%), Positives = 327/783 (41%), Gaps = 84/783 (10%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNP 776
L+ + V++ YD TVRN N ++Q Y + AGE V LA SN
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL-------AGESVEFQNLATLKPSNK 914
Query: 777 AYK 779
A++
Sbjct: 915 AFE 917
Score = 43.1 bits (100), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
Length = 1375
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 198/758 (26%), Positives = 314/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NI++L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCINDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ S N I + + G E + L L L GFS+ + D + + L
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLL---- 710
Query: 571 KEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK-----FILK----------SST 615
+A Y LL +E ++ ++ A+ ILK S+
Sbjct: 711 ---KAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 616 LGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIYPM 667
L L S S ++ + F+ + Q + G HFE+ +
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 146/568 (25%), Positives = 256/568 (45%), Gaps = 49/568 (8%)
Query: 211 GQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 270
GQ + ++ + + + + AR K ++R + K FS+RSVIT D
Sbjct: 281 GQPIAMQKSGRPIKSISARL----------KGKEGRIRGNLMGKRVDFSARSVITPDPAI 330
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREG------- 323
++E+GVP IA TF E+VN NIN LQ++V+N T G++ +G
Sbjct: 331 ELDEVGVPLHIAMIQTFPEKVNSININTLQKMVNNGP--TEYPGANYVIRNDGQRIDLKY 388
Query: 324 SKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLS 383
S+ L G +V R ++D D V NR P+ HK S+ + ++ T ++N + P +
Sbjct: 389 SRFDLKLEKGFIVERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYN 448
Query: 384 ADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKY 442
ADFDGD ++L PQS K+E++ L SV + ++S + + + D L+ +++ K
Sbjct: 449 ADFDGDEMNLHMPQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNT 508
Query: 443 FLDKAFTQQLAMFALSPLP--------RPALSKARCSARWTALQILQSVLPPGFDSCGDR 494
F +K T L +F L L P L + W+ LQI +V P F+
Sbjct: 509 FFNKRETMNL-LFTLDTLEEKVMEIINNPILIIHNKISLWSGLQIFSAVFPNKFNFNYKG 567
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF-ADGFS 553
+IK S ++ G + T + ++ I + G E +F +++Q L+ +F + F+
Sbjct: 568 VVIKNSNLITGTLSKITCGATHGGLIHVICNDYGCLEATKFINNVQRLINHFMFHINSFT 627
Query: 554 VSLEDFSLSKAALW----NIQKEIQALYSLL-YHRMSTQNELVDLQIENHIR-HVKMLVA 607
+ + D ++ + NI I + L+ ++ +L L IEN V +++
Sbjct: 628 IGIGDTIINPEIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLTIENTFESKVNLILN 687
Query: 608 KF------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF 661
K I + + +I S S + + Q +G Q + GK + HF
Sbjct: 688 KARDYKGEITLCNNMNAMILSGSKGSKINIAQMTSCVG-QQNVEGKRIPFGFEKRTLPHF 746
Query: 662 ERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
++ +Y G I + G+ P E H++ RE ++ ++ +E G + + L+
Sbjct: 747 QK-----FDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAIKTAETGYIQRRLV 801
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ D V+ D +VRN I QF Y
Sbjct: 802 KAMEDAVVRSDSSVRNGFG-KIYQFAYG 828
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 10 LEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCE-SCGTSEPG-- 66
L+ +I+GI FGL + +EI S+ + H + N G+P E G + GT+E
Sbjct: 5 LDKKIIGINFGLFSPEEIKKTSV--VHVIHPETIEN---GVPKENGLIDLRMGTTEKNFL 59
Query: 67 ---------KCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H +I+++K
Sbjct: 60 CQTCNENMFDCVGHFGHIELCKPMFHIGYITKIK 93
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 176/747 (23%), Positives = 305/747 (40%), Gaps = 89/747 (11%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K +GH G Y PS + L + A + D +++ + V E+LK
Sbjct: 164 DPNKKQGHGGCGH-----YQPS-LRRTGLDVIAEWKHVNEDSQEKKIAVTAERVWEILKH 217
Query: 124 IPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L F + D I+ LPVPP + + G + DL+ + +
Sbjct: 218 ITDEECYVLGMDPKFARPDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKAN 277
Query: 183 VEIIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
E+ ++ +G F + ND+ G ++ + K + V +R
Sbjct: 278 NELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMP---GMPKAMQKSGKPLKSVKSRL- 333
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
K ++R + K FS+R+VIT D R++++GVP +AQ +TF E V
Sbjct: 334 ---------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELV 384
Query: 292 NVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGD 344
NI+ +QELV D LR K L+ G V R + D D
Sbjct: 385 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDD 444
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AE
Sbjct: 445 LVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE 504
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PL 460
+ + +Q+++ + + D L +++ M K+ FL+K L MF + +
Sbjct: 505 IENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKM 564
Query: 461 PRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKK 499
P+P + K + WT QI ++P + S GD + +++
Sbjct: 565 PQPCILKPK--PLWTGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEH 622
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E++ G + T+ + ++ +F E G E F+ ++Q ++ L +G S+ + D
Sbjct: 623 GELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDT 682
Query: 560 SLSKAALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV-------- 602
IQ+ I+ + H M T + EN + +
Sbjct: 683 IADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKT 742
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 743 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF- 800
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 801 ----IKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIK 856
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ V++ YDGTVRN +IQ Y
Sbjct: 857 AMESVMVNYDGTVRNSVGQ-LIQLRYG 882
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + EI S+++ I +A L +P G+ +C++C +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGNM-T 73
Query: 67 KCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPE 126
+C GHFG+I+L P++H +++ + VA S ++KE++ +
Sbjct: 74 ECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVA----PSNPKIKEIVMKSKG 129
Query: 127 ETRKKLA 133
+ RK+LA
Sbjct: 130 QPRKRLA 136
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 163/706 (23%), Positives = 299/706 (42%), Gaps = 75/706 (10%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPD 159
+ D ++++ + V E+ K+I +E + F + +++ LPVPP +
Sbjct: 199 VNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAV 258
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
++ G + DL+ + + ++ R+ +G + V ++D++L QY
Sbjct: 259 VTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGA----AAHVLTDDVRLL--QYHVATLV 312
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ P + K L+ ++R + K FS+R+VIT D ++ +
Sbjct: 313 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 372
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---------- 325
GVP IAQ +TF E V N++ LQELV N+ Y + Y +RE
Sbjct: 373 GVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--GAKYIIRENGARVDLRYHPRA 429
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L+PG V R + DGD + NR PT HK S+ V + T ++N + P +AD
Sbjct: 430 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 489
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQSL +AE+ E+ V +QL++ + + D L ++++M K+ F+
Sbjct: 490 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFI 549
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------------ 489
D F L M+ + +P+PA+ K + WT Q+ ++P +
Sbjct: 550 DWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 607
Query: 490 --------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
S GD + LI+ E+L G T+ ++ + E G E F+ +Q
Sbjct: 608 DSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQ 667
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM---------STQNELV 591
++ L +G ++ + D ++ +IQ I+ + + T +
Sbjct: 668 TVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 727
Query: 592 DLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
EN + + K + + + ++ S S + + Q +G Q +
Sbjct: 728 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVG-QQN 786
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
GK HF + +Y G ++ + GL P E H++ RE +
Sbjct: 787 VEGKRIPFGFRHRTLPHF-----IKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGL 841
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ + V++ YDGTVRN + ++Q Y
Sbjct: 842 IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQ-MVQLRYG 886
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 161/644 (25%), Positives = 285/644 (44%), Gaps = 78/644 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGT 219
D S DL+ + V E+ + ++G P E + LQ V Y+ E+ G
Sbjct: 230 DTASRGEDDLTHKLADIVKANRELKKQEKNGVPAHIITEA-TQFLQFHVATYVDNEIPGL 288
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
++ + S P + + L+ ++R + K FS+R+VIT D ++++
Sbjct: 289 PQAQQR-------SGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQV 341
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELV----DNKLCLTY--SDGSSSYSLREGSK-GHT 328
GVP IA +T+ E V NI+ ++EL+ D Y + + LR K T
Sbjct: 342 GVPRSIALNLTYPETVTPFNIDRMRELIRRGPDEHPGAKYVIREDGQRFDLRFVKKLTDT 401
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
L G V R + DGD V NR P+ HK S+ + V T ++N + P +ADFDG
Sbjct: 402 HLEVGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDG 461
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA 447
D ++L PQ+L +AEV+E+ V +Q++S + + + D+LL ++ K+ F+++
Sbjct: 462 DEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIERD 521
Query: 448 FTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP----PGFDSCGDR------ 494
+ M+ S +P PA+ K + WT QI ++P F S +
Sbjct: 522 LMMNILMWLPSWDGKIPPPAIWKPK--KLWTGKQIFSLIIPKINLTRFTSTHNDKEKEKS 579
Query: 495 -------YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
+I + E++ G + ++ S I+ + E G E F D Q ++ L
Sbjct: 580 EMASDTVVIIDQGELMSGILCKRSLGSANGSIIHVVQNEHGHEATRCFIDQTQTVVNSWL 639
Query: 548 FADGFSVSLEDFSLSKAALWNIQKEIQA----LYSLLYHRMSTQNELVDLQ--IENHIRH 601
+ GF+V + D A + +Q I + + L+ S Q E + +E+ +
Sbjct: 640 ISHGFTVGIGDTIADSATMAKVQNAITSAKTQVKELIIKAQSNQFECQPGKSMLESFEKE 699
Query: 602 VKMLV-----------AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK--- 647
V ++ K + +S+ + ++++ S + + Q +G Q + GK
Sbjct: 700 VNRVLNTARDDAGTSAQKSLQESNNVKAMVNAGSKGSFINISQMMACVG-QQNVEGKRIP 758
Query: 648 --FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
F ++TL HF + +Y G ++ + GL P E H++ RE ++
Sbjct: 759 FGFQNRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 808
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ SE G + + L+ + DV + YD TVRN + +IQF Y
Sbjct: 809 TAVKTSETGYIQRRLVKAMEDVSVRYDATVRNSLGD-VIQFAYG 851
>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
Length = 989
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 167/622 (26%), Positives = 271/622 (43%), Gaps = 56/622 (9%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G+P QE ES LQ V Y++ + G ++ +
Sbjct: 183 DLTYKLGDIIRANGNVRRCEQEGSPAHVVQEFESL-LQFHVATYMDNDIAGQPQALQK-- 239
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 240 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 294
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI L +LV N D LR + G L+ G V
Sbjct: 295 TLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKV 354
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I+DGD HK S+ V V T ++N + P +ADFDG ++L P
Sbjct: 355 ERHIVDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGYEMNLHVP 414
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFA 456
QS +AEV +L V ++S + + D L + M ++ D T++L M
Sbjct: 415 QSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYNMCRR---DVFLTKELXMNV 471
Query: 457 L-------SPLPRPALSKARCSARWTALQILQSVLPP----------GFDSCGDR-YLIK 498
L +P+PA+ K + WT QIL V+P GF D LI
Sbjct: 472 LLWVPDWDGVIPQPAIIKPK--PMWTGKQILSLVIPTGLNLLRSSDEGFYPINDHGLLIS 529
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
E++ G ++ ++ + I+ I+ EKG + FF+ Q ++ L GFS+ + D
Sbjct: 530 GGELMYGLLNKKSVGASGGGIIHIIYNEKGWGAAMNFFNGAQTVVNYWLLHXGFSIGIGD 589
Query: 559 FSLSKAALWNIQKEI--QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTL 616
+ + I+ + Q + R +T+NEL L N + V+K + K+
Sbjct: 590 TIPDRNTIQQIEDAVNKQKDEAGEITRSATENELDSLPGMNVRETFESKVSKALNKARDD 649
Query: 617 GYLIDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKTLVEDIASHFE---RIYP--M 667
+ KS ++ Q A G G + +S + VE F R P
Sbjct: 650 AGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 709
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV
Sbjct: 710 KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 769
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
+ YDGTVRN + I+QF Y
Sbjct: 770 MAKYDGTVRNSLGD-IVQFVYG 790
>gi|346972060|gb|EGY15512.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium dahliae
VdLs.17]
Length = 1456
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 171/703 (24%), Positives = 293/703 (41%), Gaps = 115/703 (16%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
+I ++LP PP C+ P ++ ++ DL+ + V I + + G+P ++ +
Sbjct: 262 FIWQFLPAPPVCIR-PSVAQDNASTEDDLTTKLADIVWISGMIRLALQKGSP-VQTIMEQ 319
Query: 203 SNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKG 255
LQL + Y L+ G K+ R R Q + R K
Sbjct: 320 WEYLQLQIAMYVNSDVPGLQQPGFGKTVRGFCQRLKGKQG----------RFRGNLSGKR 369
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN--------KL 307
FS R+VI+ D + ++ +P +A+ +T+ ERVN +++ L++ V N +
Sbjct: 370 VDFSGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGAQQ 429
Query: 308 CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ +G SL+ G++ L+ G VV R I D D V NR P+ HK S+ + V
Sbjct: 430 VIKSDEGGYKISLKFGNRRQVARDLKVGDVVERHIEDNDIVLFNRQPSLHKLSIMSHLVK 489
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ L + NG +
Sbjct: 490 VRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEPII 549
Query: 426 QLATDALLSLKVMF-KKYFLDKAFTQQLAMFALS-----PLPRPALSKARCSARWTALQI 479
D + + ++ K F D+ + M + LP PA+ K + A WT Q+
Sbjct: 550 AATQDFITAAYLLSGKDRFFDRKTFTYIVMHMMDGITHLDLPPPAILKPQ--ALWTGKQV 607
Query: 480 LQSVLPPGFD-------------------SCGDR------YLIKKSEVLKGDFDRDTIPS 514
+L P + C D +I+ SEV+ G D+ T+
Sbjct: 608 FSMMLRPNKECQVKINLDAKCREYKAKPGQCPDMDPEDAWLVIRNSEVMCGRMDKSTVGG 667
Query: 515 VINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFADGFSVSLEDF-------------- 559
+ V + GP+E + + L L L GFS+ + D
Sbjct: 668 GKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGVGDVFPTEQLLVKKKKLI 727
Query: 560 -----------------SLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHV 602
L KA N+++ ++ S L ++ TQ +Q + +
Sbjct: 728 EDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCIQTLSR-NNA 786
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+++AK K S + + + VV Q G +++D F ++L HF
Sbjct: 787 PLVMAKSGSKGSEINV-------AQMVAVVGQQIIGGSRVAD--GFQDRSL-----PHFH 832
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ P P +K G + F+ GL P E + H++S RE +V ++ +E G + + LM
Sbjct: 833 KNAPQ----PPSK-GFVGNSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMK 887
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR I+QF + + + + +PV
Sbjct: 888 SLEDLSTRYDDTVR-TSGGGIVQFQFGADKLDPVDMEGSAKPV 929
Score = 48.5 bits (114), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSE 64
GI+FG+ + ++I ++ + S + N P LG + GKC++C S
Sbjct: 23 GIKFGIQSNQDIANQAVLEVSDRLLYDVDNNRAPFQHGPLDPRLGTSSKIGKCDTCQESL 82
Query: 65 PGKCEGHFGYIELPIPIYHPSHIS 88
C GHFG++ LP+P +H ++
Sbjct: 83 Q-NCTGHFGHVRLPLPAFHIGYLG 105
>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis
poeltiana]
Length = 988
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 161/653 (24%), Positives = 285/653 (43%), Gaps = 118/653 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 176 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 229
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 230 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V N+ L+ V N ++ L Y +S +L++G K
Sbjct: 290 TYPETVTRFNMERLKNFVANGPQMHPGARYIIRENNERIDLRYHKNTSEIALKKGWK--- 346
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 347 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 392
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS +AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 393 DEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 452
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT QI+ VLPP
Sbjct: 453 AVMNIMLWVPDWDGVIPQPAILKPR--PRWTGKQIISMVLPPALNLVRIDGKPGQPPGER 510
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 511 FAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYW 570
Query: 547 LFADGFSVSLED------------FSLSKAALW-------NIQKEIQALYSL-------- 579
L +GFS+ + D F + K + +E++AL +
Sbjct: 571 LLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKTEVERITQSAVAEELEALPGMNVRETFES 630
Query: 580 -LYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 631 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQS 683
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ F +TL HF + +Y A G ++ + GL P E H+
Sbjct: 684 VEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHA 731
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 732 MAGREGLIDTAVKTAEAGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 783
>gi|448737566|ref|ZP_21719606.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
gi|445803710|gb|EMA53993.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
Length = 985
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 166/654 (25%), Positives = 280/654 (42%), Gaps = 67/654 (10%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 280 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 338
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 339 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 390
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSS 316
FS+R+VI+ D +NE+GVP +A+ +T VN NI ++ V N + + +
Sbjct: 391 NFSARTVISPDPTLSLNEVGVPERVAREMTQTMNVNEQNIEEARQYVRNG---SEAHPGA 447
Query: 317 SYSLREGSKGHTFL-----------RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ +R K L PG V R + DGD V NR P+ H+ S+ A V
Sbjct: 448 NRVIRPDGKVMKILDQAKEELAERIEPGWQVQRHLSDGDIVIFNRQPSLHRMSIMAHEVV 507
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
V T ++N +C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 508 VMPYKTFRLNTTVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENII 567
Query: 426 QLATDALLSLKVMFKK--------YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTAL 477
D + ++ F + L + LP + + WT
Sbjct: 568 GAIQDHVSGTYLLTHDDPEMGGLPRFNETQALDLLRATGVDTLPDDDGTDEQGRPYWTGR 627
Query: 478 QILQSVLPPGFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
I +LP D S GDR I +++G D D + + EIV +I +
Sbjct: 628 TIFSELLPSALDLEFTSSTGDRVAIDDGALVEGTIDEDAVGAFGGEIVDTIVKQYSETRA 687
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST--QNEL 590
F + + L M + GFS+ ++D S+S AA I + ++ Y + + T ++L
Sbjct: 688 RVFINEVASLAMRAIMHFGFSIGIDDESISDAAEAQIDESMENAYERVQELIDTYENDDL 747
Query: 591 VDLQIENHIRHVKMLVAKFILKS-STLGYLIDSKSDSAVSKVV--------------QQA 635
L ++M + + + K+ + G + D D V+ Q A
Sbjct: 748 ESLPGRTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMA 807
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
+G Q RG+ ++ + SHF+ P DL+ +G ++ + GL P E H
Sbjct: 808 ACVGQQAV-RGERINRGYEDRTLSHFK---PGDLS--AEAHGFVEDSYRSGLTPREFFFH 861
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE +V ++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 862 AMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDNIVQFEFG 914
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 158/646 (24%), Positives = 281/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPEHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L+ V N + + Y +RE + L+ G
Sbjct: 301 TYPETVTRFNISRLKAFVTNG---PEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHLMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIVKPR--PRWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ +A S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVREAFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
anubis]
Length = 1390
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 201/758 (26%), Positives = 317/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NI++L++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K L+ G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQQRHTQMKRFLKYGNRE--KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCSAR 473
+ D L ++ K F D+A Q+ L LP P + K
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--VTL 594
Query: 474 WTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDRDT 511
WT QI +L P D+ CG D Y+ I+ SE++ G D+ T
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED-----------F 559
+ S N I + + G E + L L L GFS+ + D +
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 560 SLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
L A + I+AL + L T E ++ I + ++ L+
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
Length = 1006
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 171/680 (25%), Positives = 282/680 (41%), Gaps = 116/680 (17%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
++ LPVPP + +G + DL+ A+ V ++ + G P V S
Sbjct: 161 MISVLPVPPMPVRPAVAVEGQAKGEDDLTYALRNIVETNKKLREALEQGAP----LHVIS 216
Query: 204 NDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFS 259
D +LA+ QY +A S P T ++ L+ ++R + K FS
Sbjct: 217 -DFELAL-QYHVATFMDNDGAGANAAAHKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFS 274
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYS 312
+R+VITGD ++++GVP IA+ +TF E V N L V N + S
Sbjct: 275 ARTVITGDPNLSIDQVGVPRSIARNLTFPEVVTKCNFEKLAAAVANGPTAHPGAKYVINS 334
Query: 313 DGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTV 372
+G + LR + L+ G V R +MD D + NR P+ HK S+ V V T
Sbjct: 335 NGDRT-DLRYAREDSVILKIGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTF 393
Query: 373 KINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL 432
++N + P +ADFDGD ++L PQS KAE+ EL V +Q++S + + D L
Sbjct: 394 RLNLSVTSPYNADFDGDEMNLHVPQSYQTKAEIQELCVVPRQIVSPQKNGPVMGIVQDTL 453
Query: 433 LSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLP--- 485
+ + ++ FL K + M+ +P PA+ K WT Q++ ++P
Sbjct: 454 CGITMFTQRDTFLRKDMMMNILMWVPDWDGNIPEPAILKP--VPLWTGKQMMSLIIPRIN 511
Query: 486 --------PGFD----SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
P + S GD R +I+ E++ G + T+ S I+ + E GPE
Sbjct: 512 MEGKHFGHPDAEKTWMSPGDTRVIIQDGELIAGILSKGTVGSAAGGIIHTTMNEHGPEVA 571
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD 592
FF+ Q ++ L +GFS+ + D +++ AAL
Sbjct: 572 KGFFNGTQLVVNYWLLHNGFSIGIGD-TVANAALLR------------------------ 606
Query: 593 LQIENHIRHVKMLVAKFILKSS----------TLGYLIDSKSDSAVSK------------ 630
++++H+R+ K VA I K+ T+ +S +A+SK
Sbjct: 607 -RVDDHLRNGKEQVADIIAKAENEALEPSPGMTIKETFESYVGAALSKAREDAGKGGLAG 665
Query: 631 ---------------------VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDL 669
+ Q A +G QL + GK H+ +
Sbjct: 666 LGKQNNARHMVYAGSKGSDVNIGQMAACVGQQLVE-GKRIPYGFRFRTLPHYTKD----- 719
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G + + GL P E H++ RE ++ ++ +E G + + L+ + DV+
Sbjct: 720 DYEAESRGFVDNSYVRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMA 779
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YDGTVRN ++QF Y
Sbjct: 780 KYDGTVRNSLG-EVVQFLYG 798
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRTGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 182/720 (25%), Positives = 307/720 (42%), Gaps = 66/720 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P I L + A + D ++++ + V E+ KRI +E L F +
Sbjct: 187 YQP-QIRRSGLDLSAEWKHVNEDSQEKKIVLTAERVHEIFKRISDEESIALGMDPKFTRP 245
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLS--IAMLKKVLKQVEIIRSSRSGTPNFES 198
D I+ LPVPP C+ + G + DL+ +A + K+ Q++ R+ ++G
Sbjct: 246 DWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLK--RNEQNGAAAHII 303
Query: 199 QEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
E ++ LQ V ++ R KS R + + KA ++R +
Sbjct: 304 AE-DTRMLQFHVATIIDNELPGLPRAMQKSGRPLKSL-------KQRLKAKEGRIRGNLM 355
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------ 306
K FS+R+VIT D ++++GVP IA +T+ E V NI LQELV
Sbjct: 356 GKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPG 415
Query: 307 LCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
D LR K L+ G V R + D D V NR PT HK S+ V
Sbjct: 416 AKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVK 475
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQS+ +AEV E+ V + +++ + +
Sbjct: 476 ILTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRNMITPQSNRPVM 535
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D+L +++ K+ F+ K L +F + +P+PA+ K R WT Q+L
Sbjct: 536 GIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILKPR--PLWTGKQLLT 593
Query: 482 SVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
V+P + S GD + I E++ G + T+ + +
Sbjct: 594 LVIPDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCKKTVGASGGTLG 653
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSL 579
IF E+G E EF+ +Q L+ L +G S+ + D + +IQ I +A +
Sbjct: 654 HIIFMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADASTYDDIQNTIRKAKQDV 713
Query: 580 LYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQQAG 636
+ N+ + N +R +L + T G S S+ K + AG
Sbjct: 714 IEVIEKAHNDELTPTPGNSLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAG 773
Query: 637 FLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDP 689
G + +S + VE F R P + +Y G ++ + GL P
Sbjct: 774 SKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTP 833
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ + V++ YDGT RN ++ ++Q Y
Sbjct: 834 SEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRN-SNDQLVQLRYG 892
>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
Length = 1548
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 202/842 (23%), Positives = 335/842 (39%), Gaps = 172/842 (20%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAF----------------QLQ 100
C +CG + C GH+GY++L +P++H L +Y +
Sbjct: 144 CSTCG-KDNNHCVGHWGYVKLELPVFHVGFFKYLNQILYCICKRCSNLLLPEDSIKKYQE 202
Query: 101 IKNDGVA---------QRLLSSC-----CE--------VKEMLK-------RIPEETRKK 131
I+N G+ +++L C C+ VK ++K R+ R K
Sbjct: 203 IRNKGIDDPLFKVSLFRKILQECKNKKTCDRCGAPQGTVKRIVKPTLDQFMRMKHVVRHK 262
Query: 132 LAGK----------------------------GYFPQDGYILEYLPVPPNCL--SVP--- 158
+GK + I+ L + PNC+ SVP
Sbjct: 263 ESGKVQARDEELNPIVVKHLFEAMDPAHVKLLNIASPEKMIITNLAISPNCIRPSVPMEG 322
Query: 159 --DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDL----QLAVGQ 212
D ++ ++SD+ I + K + KQ++ + S N++ ++ L AV Q
Sbjct: 323 QGSTEDDLTIITSDI-IEVNKTLKKQLQDGQQSSRFILNWQFMQLHCTRLINTDAPAVSQ 381
Query: 213 YLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
L + K R + R K + R K + FSSR+VI+ D +
Sbjct: 382 LLSTKNITKPGRGLCQRL----------KGKEGRFRGNLSGKRADFSSRTVISPDPNVGI 431
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------TYSDGSSSYSLREGSKG 326
+EI VP +IA ++TF E VN NI L++ V N + S +LR +
Sbjct: 432 DEIVVPEQIATKLTFPEVVNAGNIEVLRKAVINGWSVWPGASYVIKANGSKTTLRIANPN 491
Query: 327 HTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSA 384
H L G +V R + DGD V NR P+ H+ S+ A V V T + N +C P +A
Sbjct: 492 HIADNLEIGDIVERHLWDGDIVIFNRQPSLHRMSIMAHRVRVMPGSTFRFNECVCQPYNA 551
Query: 385 DFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--Y 442
DFDGD +++ PQ+ A+AE L L SV + L + NG+ + D L + ++ K +
Sbjct: 552 DFDGDEMNMHLPQTYEARAESLYLLSVLQNLTTPRNGDPLIAAVQDFLSASYLLTSKDRF 611
Query: 443 FLDKAFTQQLAMFALSP----LPRPALSKARCSARWTALQILQSVLPPGFDS-------C 491
K F Q F + +P PA+ + WT QI +L P S C
Sbjct: 612 LTRKQFCQICCYFTNASIQVDIPPPAIIYP--TMLWTGKQIFNVLLRPSRKSNVIVNFEC 669
Query: 492 GDR--------------------------YLI-KKSEVLKGDFDRDTIPSVINEIVTSIF 524
+R Y+I SE++ G ++ + + +
Sbjct: 670 REREFHNIKDYEHNYGMTNLHQCMCPKDGYVIFYNSELMCGALGVKSLGASKGGLFYQLL 729
Query: 525 FEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKE------------ 572
+ + E + L L G ++ L+D A L N + E
Sbjct: 730 KKNSSKIAAECMLRVSKLASRWLAEFGMTIGLDDVR-PGAELLNRKSELLMDGYSRVSEA 788
Query: 573 IQALYSLLYHRMSTQNELVDLQIE---NHIRHVKMLVAKFILKSSTLGYLI-DSKSDSAV 628
I+ L + T+ E ++LQ++ + +R+ V LK+ ++ +S + A+
Sbjct: 789 IKNFKDLQAYPGCTREETLELQVKSVLDDLRNEAGKVCNAHLKNDNKPLIMFNSGAKGAL 848
Query: 629 SKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAK-YGLIKGCFFHGL 687
+ Q +G Q + G+ + HF ++ AK G + FF GL
Sbjct: 849 INIAQMVACVG-QQNVSGQRIQNGFIGRTLPHF------NIGCRDAKSRGFVANSFFSGL 901
Query: 688 DPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFD 747
+P E H++S RE ++ ++ SE G + + LM V+ D+ ICYD TVR ++QF
Sbjct: 902 EPEEFFFHTMSGREGLIDTAVKTSETGYMQRKLMKVMEDLAICYDHTVR-ASDGHVVQFL 960
Query: 748 YA 749
Y
Sbjct: 961 YG 962
>gi|170039594|ref|XP_001847615.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863133|gb|EDS26516.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1303
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 176/668 (26%), Positives = 282/668 (42%), Gaps = 90/668 (13%)
Query: 116 EVKEMLKRIPEETRKKLAGKG--YFPQDGYILEYLPVPPNCLSVPDISD-GVSTMSSDLS 172
EV ++ K IP+ L P D I+ + VPP C+ +S+ T DL+
Sbjct: 224 EVLDLFKNIPKSDIPLLGMTSPESNPAD-LIVTRVFVPPVCIRPSVVSEVKAGTTEDDLT 282
Query: 173 IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ + +L I + SG E + + + LQL Y E+ G S
Sbjct: 283 MKQSEILLISDVITKHMMSGG-KIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTR 341
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G+ Q K + R K FS+R+VI+ D ++++GVP +A+ +TF ER
Sbjct: 342 GIVQ----RLKGKQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPER 397
Query: 291 VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFL------------RPGQVVHR 338
VN NIN +++L+ N T ++Y ++GS +L + G +V R
Sbjct: 398 VNTANINRMRQLIKNG---TEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVER 454
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
+MDGD V NR P+ HK S+ V T + N C P +ADFDGD ++L PQ+
Sbjct: 455 HLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQT 514
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL 457
A+AE L L + L++ NG L + D + ++ +K FL + QLA L
Sbjct: 515 EEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTREQVMQLAACML 574
Query: 458 S--------PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDR 509
S LP+PA+ K R WT QI +L P S + L K D
Sbjct: 575 SGPDANMEIDLPKPAIIKPR--KLWTGKQIFSLILKPNRHSVVNANLSTKGRNYTTGKD- 631
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + EK + L +G+S E + K
Sbjct: 632 ----------IRKLLEEK-----------------QKLLENGYSRCDEYIAEMKKGTLQC 664
Query: 570 QKEI---QALYSLLYHRMSTQNELVDLQI--ENHIRHVKMLVAKFILKSSTLGYLIDSKS 624
Q Q L +++ +S+ EL E H + +++A+ K S +
Sbjct: 665 QPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNIN------- 717
Query: 625 DSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFF 684
+S+++ G Q + GK + HFE+ + P A+ G ++ F+
Sbjct: 718 ---ISQMIACVG----QQAINGKRVPNGFEDRALPHFEKFSKI----PAAR-GFVQNSFY 765
Query: 685 HGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSII 744
GL P E H+++ RE +V ++ +E G L + L+ L D+V+ YDGTVRN ++
Sbjct: 766 SGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIG-EVV 824
Query: 745 QFDYAVNA 752
+F Y +
Sbjct: 825 EFTYGADG 832
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 182/720 (25%), Positives = 307/720 (42%), Gaps = 66/720 (9%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P I L + A + D ++++ + V E+ KRI +E L F +
Sbjct: 187 YQP-QIRRSGLDLSAEWKHVNEDSQEKKIVLTAERVHEIFKRISDEESIALGMDPKFTRP 245
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLS--IAMLKKVLKQVEIIRSSRSGTPNFES 198
D I+ LPVPP C+ + G + DL+ +A + K+ Q++ R+ ++G
Sbjct: 246 DWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLK--RNEQNGAAAHII 303
Query: 199 QEVESNDLQLAVGQYLE------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
E ++ LQ V ++ R KS R + + KA ++R +
Sbjct: 304 AE-DTRMLQFHVATIIDNELPGLPRAMQKSGRPLKSL-------KQRLKAKEGRIRGNLM 355
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------ 306
K FS+R+VIT D ++++GVP IA +T+ E V NI LQELV
Sbjct: 356 GKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPG 415
Query: 307 LCLTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
D LR K L+ G V R + D D V NR PT HK S+ V
Sbjct: 416 AKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVK 475
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQS+ +AEV E+ V + +++ + +
Sbjct: 476 ILTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRNMITPQSNRPVM 535
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D+L +++ K+ F+ K L +F + +P+PA+ K R WT Q+L
Sbjct: 536 GIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILKPR--PLWTGKQLLT 593
Query: 482 SVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
V+P + S GD + I E++ G + T+ + +
Sbjct: 594 LVIPDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCKKTVGASGGTLG 653
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSL 579
IF E+G E EF+ +Q L+ L +G S+ + D + +IQ I +A +
Sbjct: 654 HIIFMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADASTYDDIQNTIRKAKQDV 713
Query: 580 LYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQQAG 636
+ N+ + N +R +L + T G S S+ K + AG
Sbjct: 714 IEVIEKAHNDELTPTPGNSLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAG 773
Query: 637 FLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDP 689
G + +S + VE F R P + +Y G ++ + GL P
Sbjct: 774 SKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTP 833
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H++ RE ++ ++ +E G + + L+ + V++ YDGT RN ++ ++Q Y
Sbjct: 834 SEMFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRN-SNDQLVQLRYG 892
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRTGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|123979336|gb|ABM81493.1| RNA polymerase II largest subunit [Buellia dialyta]
Length = 994
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 167/642 (26%), Positives = 278/642 (43%), Gaps = 63/642 (9%)
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
D DG + DL+ + + + R + GTP +E E+ LQ V Y+
Sbjct: 166 DSGDGPAG-EDDLTYKLGDIIRASGNVRRGEQEGTPQHIVEEFETL-LQFHVATYMSNDT 223
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ + KS R V A S K ++R + K FS+R+VITGD +
Sbjct: 224 AGQPQALQKSGRPVKA-------IRSRLKGKEGRVRGNLMGKRVDFSARTVITGDPNLCL 276
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN------KLCLTYSDGSSSYSLREGSK- 325
+E+GVP IA+ +T+ E V +NI+ L +LV N D LR +
Sbjct: 277 DEVGVPRSIARTMTYPETVTPYNIHKLHQLVKNGPNEHPGARYVIRDSGERIDLRYHKRA 336
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQA----------LSVYVHDDHTVKIN 375
G L+ G V R I+DGD + NR P+ HK S+ V V T ++N
Sbjct: 337 GELSLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGQGXTRNLXWVXRVRVMPYSTFRLN 396
Query: 376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
+ P +ADFDGD ++L PQS +AEV +L V ++S + + D L +
Sbjct: 397 LSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGI 456
Query: 436 -KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG---- 487
K+ + FL++ + ++ +P+PA+ K + WT QI+ ++P G
Sbjct: 457 YKICRRDVFLNQYQVMNILLWVPDWDGIIPQPAILKP--TPMWTGKQIVSLIIPAGLNLV 514
Query: 488 --------FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDS 538
F D L I E++ G + + + I+ +F EKGPE + FF+
Sbjct: 515 RPGEKENPFSPSDDGGLYISNGELMYGLLAKKIVGASSGGIIHIVFNEKGPEAAMNFFNG 574
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH--RMSTQNELVDLQIE 596
Q ++ L +GFS+ + D + + I+ + + + + +T++ L L
Sbjct: 575 AQTVVNYWLLHNGFSIGIGDTIPDRDTIKRIEDAVNQQKADVTEITKEATESVLDTLPGM 634
Query: 597 NHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA--GFLG--LQLSDRGKFYSKT 652
N + V+K + K+ +S ++ +Q A G G + +S +
Sbjct: 635 NVRETFESKVSKALNKARDDAGTATEQSLKDINNAIQMARSGSKGSTINISRMTAVVGQQ 694
Query: 653 LVEDIASHFE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
VE F R P +Y G ++ + GL P E H+++ RE ++ ++
Sbjct: 695 SVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 754
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L DV+ YDGTVRN + I+QF Y
Sbjct: 755 VKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYG 795
>gi|124485981|ref|YP_001030597.1| DNA-directed RNA polymerase subunit A' [Methanocorpusculum
labreanum Z]
gi|124363522|gb|ABN07330.1| DNA-directed RNA polymerase, subunit A' [Methanocorpusculum
labreanum Z]
Length = 889
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 170/725 (23%), Positives = 307/725 (42%), Gaps = 92/725 (12%)
Query: 107 AQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISD 162
++R L+S +++E L++IP++ + L G P+ + +L LPVPP + I +
Sbjct: 173 SERKLTSA-DIRERLEKIPDDDLRLL---GIDPEVARPEWTVLTVLPVPPVTVRPSIILE 228
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTA 220
DL+ ++ + + +G P +++ LQ V YL EV G
Sbjct: 229 NGQRSEDDLTHKLVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYLDNEVAGCP 287
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIG 276
+ S P T L+ + R K FS+R+VI+ D + E+G
Sbjct: 288 PARHR-------SGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSIGEVG 340
Query: 277 VPFEIAQRITFEERVNVHNINYLQELVD---------NKLCLTYSDGSSSYSLR--EGSK 325
+P IA ++ RV N+ ++ L+ + Y + +R G +
Sbjct: 341 IPLAIANEMSVPVRVTKQNLEDMRALIRIGPHRPTLRDPCGANYVNRPDGRRIRLIAGEE 400
Query: 326 GH-----TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
G+ + PG + R++ DGD V NR P+ H+ S+ + + V + T ++NP +C
Sbjct: 401 GNCDTVAEMIEPGWKIDRQLRDGDIVLFNRQPSLHRMSIMSHHIKVMNGRTFRLNPAVCP 460
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQ+ A+AE L +V++ +LS G + D + + ++
Sbjct: 461 PYNADFDGDEMNLHVPQTEEARAEAELLVAVQENILSPRFGGPIIGGLHDHISGIFLLTN 520
Query: 441 --KYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPPGF---------- 488
K++ F L A+ LP P + W+ Q +LP
Sbjct: 521 QLKWYTKSEFLYLLKYTAMEHLPEPGKVENGIPY-WSNKQAFSMILPKDVNMFYKATCCR 579
Query: 489 --DSC-------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDS 538
D C D ++ I E++ G D+ ++ ++ I+ I G + E+ D
Sbjct: 580 NCDPCTKNTFCPNDAFVRIVDGELISGTIDKKSVGAMDGAILNRIIRLHGTQRAKEYIDD 639
Query: 539 LQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMS------------- 585
L L + + GFS + D L K I+ + + +R++
Sbjct: 640 LTKLSIRAIMLYGFSYGINDTDLGKEEYKQIRDVLDTAEHDVANRINIFEQGHLEPMPGR 699
Query: 586 TQNELVDLQIENHIRHVKMLVAKFILKSSTLGY------LIDSKSDSAVSKVVQQAGFLG 639
T E +++Q+ + + + S LG+ + S + ++ + Q AG +G
Sbjct: 700 TPEETLEMQVMKELGKARDRTGD--IASRHLGFENSAVVMAVSGARGSMLNIAQMAGCIG 757
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q + RG+ + + HF+R + +G ++ + GL+P E H+I
Sbjct: 758 -QQAVRGERIVRGYEDRTLPHFKR-----SDKGADAHGFVRNSYKSGLNPTEFFFHAIGG 811
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY---AVNARKSH 756
RE +V ++ S+ G L + ++ L+D+ + YDGTVR+ IIQF Y + KS
Sbjct: 812 REGLVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRST-GGKIIQFVYGEDGTDPAKSA 870
Query: 757 SLFPA 761
S P
Sbjct: 871 SGLPV 875
Score = 43.1 bits (100), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 13 QIVGIRFGLATQKEICTASI---------SDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I I FG+ + K I S+ D + L +P LG+ +C++CG
Sbjct: 6 RIGKIEFGILSPKAIRDMSVCKVIWPDTYDDDGFPYPKGLMDPSLGVIDPGLRCKTCGQK 65
Query: 64 EPGKCEGHFGYIELPIPIYH 83
+ G C GHFG+I+L P+ H
Sbjct: 66 Q-GDCPGHFGHIDLAKPVIH 84
>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
Length = 999
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 168/660 (25%), Positives = 288/660 (43%), Gaps = 132/660 (20%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++LV N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISKLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKSSQSPSER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + ++L G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLLFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLED--------------FSLSKAALWNIQK-----EIQALYSLLYHR---- 583
L +GFS+ + D KA + I + +++AL +
Sbjct: 582 LLHNGFSIGIGDTVPDINTVDAIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 641
Query: 584 --------------MSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
+T+N L D I N I+ +A+ K ST+ S ++
Sbjct: 642 KVSAALNGARDEAGTATENSLKD--INNAIQ-----MARAGSKGSTINI-------SQMT 687
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+V Q G ++ F +TL HF + +Y A G ++ + GL P
Sbjct: 688 AIVGQQSVEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTP 735
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 736 TEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 182/742 (24%), Positives = 304/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 166 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 219
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 220 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 279
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 280 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 331
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 391
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 392 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 451
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 452 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 511
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 512 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 571
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 572 LKPR--PLWTGKQIFSLIIPGNVNMIRAHETHPDEEDDGPYKWISPGDTKVMVEHGELIM 629
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 630 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 689
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 690 TYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 749
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 750 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 803
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 804 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 864 MVNYDGTVRNSVGQ-LIQLRYG 884
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGL 50
M T S Q+ ++FG+ + EI S+++ + A L +P G+
Sbjct: 1 MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGV 60
Query: 51 PLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
+C++C + +C GHFG+I+L P++H I++
Sbjct: 61 IDRTSRCQTCAGNM-TECPGHFGHIDLVKPVFHIGFITK 98
>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 880
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 184/700 (26%), Positives = 304/700 (43%), Gaps = 86/700 (12%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMS 168
+ EV+ L++IP++ + L G P D +L LPVPP + P I S
Sbjct: 175 TPAEVRSRLEKIPDDDVRLLGGD---PTDARPEWMVLTVLPVPPRAVR-PSILLETGIRS 230
Query: 169 SDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRD 225
D L +++ +R +G PN ++ E LQ V Y E G ++
Sbjct: 231 EDDLTHKLVDIIRVNNRLREHVETGAPNALIED-EWELLQYHVTTYFDNEAPGIPQAKHR 289
Query: 226 VDARF-GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQR 284
G++Q + +R K FS+R+VI+ D +NE+GVP +A+
Sbjct: 290 TGKTLKGIAQRLKGKEGRFRGNLRG----KRVDFSARTVISPDPNLSINEVGVPEVVAKV 345
Query: 285 ITFEERVNVHNINYLQELVDNKLCLTYSDG--SSSYSLREGSKGHTF-----------LR 331
+T E+V NI ++ KL L D ++Y +R + + L
Sbjct: 346 LTVPEKVTPWNIEEMR-----KLVLNGPDKWPGANYVIRPDGRKISLKFVDRKAVAESLA 400
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
PG +V R ++DGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD +
Sbjct: 401 PGFIVERHLLDGDVVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEM 460
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQS A+AE L VEK +L+ G + D + ++ K L KA
Sbjct: 461 NLHVPQSEEARAEARILMLVEKHILTPRYGGPIIGGLQDYISGAFLLTNKSTILTKAEVI 520
Query: 451 QLAMFA--LSPLPRPALSKARCSARWTALQILQSVLPPGFD-------------SCGDR- 494
L A LP PA+ R WT QI+ LP F+ C D
Sbjct: 521 DLLSVAGYKGSLPEPAIQ--RPVEYWTGKQIVSVFLPGDFNYKRNAKIASASALRCIDED 578
Query: 495 ------YLIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENL 547
+IKK ++L+G D+ +I E +V + E G + +F D++ + +
Sbjct: 579 CPHDSLVIIKKGQLLEGVIDKASIGREEPESLVHWLIKEHGEDVARKFMDNVYRMFIRFS 638
Query: 548 FADGFSVSLEDFSLSKAALWNI-------QKEIQALY-SLLYHRM----------STQNE 589
GF++S + A I ++E+ L R+ + ++E
Sbjct: 639 EMYGFTMSYYHLLIPPEARERIRSIIADKKREVSRLIEEYRAGRLQPKPGKTVEETLEDE 698
Query: 590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
++DL + + V ++ + ++ + + + S + Q A LG Q + RGK
Sbjct: 699 VIDLLSKRLLDEVADVITPYFTLANPVIVMARTGSRGNPVNLTQMAALLG-QQTVRGKRL 757
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
++ ++ HF+ P DL P A+ G + F +GL P E H+ RE ++ ++
Sbjct: 758 TRGYMDRSLPHFK---PGDLG-PEAR-GFVARGFVNGLSPIEMFFHAAGGREGLIDTAVR 812
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G + + L+ L+DV + DG+VR + +IQF Y
Sbjct: 813 TSQSGYMQRRLINALQDVRVDIDGSVRT-TNGEVIQFKYG 851
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 196/783 (25%), Positives = 327/783 (41%), Gaps = 84/783 (10%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNP 776
L+ + V++ YD TVRN N ++Q Y + AGE V LA SN
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL-------AGESVEFQNLATLKPSNK 914
Query: 777 AYK 779
A++
Sbjct: 915 AFE 917
Score = 43.1 bits (100), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRTGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 176/696 (25%), Positives = 299/696 (42%), Gaps = 84/696 (12%)
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSV-PDISDGVSTM 167
S +V ++ KRI + R LA G P+ + IL LPVPP L V P + G
Sbjct: 112 SAEKVYDIFKRISD--RDSLA-LGLDPRWVRPENLILTVLPVPP--LQVRPSVMHGGLRN 166
Query: 168 SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE----------VR 217
DL+ L ++K ++R + + + +Q V Y+ VR
Sbjct: 167 EDDLT-NKLGDIVKNNNMLRDMEAQGTVAHLLREQLDLVQYHVATYMNNEIPGVSQATVR 225
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGV 277
G +++ + + RF K ++R + K FS+R+VIT D ++E+GV
Sbjct: 226 GGSRAIKSIGQRF----------KGKEGRVRGNLMGKRVDFSARTVITPDPNLLLHEVGV 275
Query: 278 PFEIAQRITFEERVNVHNINYLQELVDNKLC-------LTYSDGSSSYSLREGSKGHTFL 330
P+ IA+ +TF E V +N +++LV+N + DG + T L
Sbjct: 276 PYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPGAKYIERDDGQKVNLSYVADRTSTNL 335
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
G V R I DGD V NR P+ HK S+ + V T ++N + P +ADFDGD
Sbjct: 336 EIGFKVIRHIKDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDE 395
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFT 449
++L PQS +AEV EL V ++S + + D LL + ++ F+++
Sbjct: 396 MNLHVPQSHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVM 455
Query: 450 QQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP----GFD-----------SC 491
L M +P PA+ K R WT QI +LPP ++ S
Sbjct: 456 MNLLMHVGDWDGVVPEPAIYKPR--PLWTGKQIFSLILPPVNLIRYNITHPDEEQEEISP 513
Query: 492 GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
GD + I + +++ G D+ T+ S N ++ + E GP+ +Q L+ +
Sbjct: 514 GDTKVYISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTAMMISQIQVLVNHYVLQR 573
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
G S+ + D + N+ I+ + + + ELV L + + + V K
Sbjct: 574 GQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKAQMKELVLLPGKGMMESFETEVNK 633
Query: 609 F---------------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+LKS+ + ++ + S + + Q +G Q + GK +
Sbjct: 634 VLNGARDKSGASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVG-QQNVEGKRIAYGF 692
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF D P ++ G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 693 NGRTLPHFA----TDDLGPESR-GFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAET 747
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
G + + L+ + DV++ YDGTVRN +N +++F Y
Sbjct: 748 GYIQRRLIKAMEDVMVRYDGTVRN-SANHVVEFLYG 782
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 161/626 (25%), Positives = 265/626 (42%), Gaps = 65/626 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL------EVRGTAKSS 223
DL+ + + + + G+P + VE+ LQ V Y+ + + KS
Sbjct: 199 DLTYKLSDIIRANANVKKCKGEGSPRSHCRRVETL-LQYHVATYMDNDIAGQPQAMQKSG 257
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
R + + S K ++R + K FS+R+VITGD ++++GVP I +
Sbjct: 258 RPI-------KSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRTICK 310
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSKGHTF-LRPGQVV 336
+T+ E V +NI+ L ELV N D LR + L+ G V
Sbjct: 311 TLTYPETVTPYNISKLHELVRNGPNEHPGAKYVIRDTGERIDLRHHKRASEITLQYGWKV 370
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MDGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 371 ERHLMDGDFIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 430
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS +AEV+ L V ++S + + D L + K+ K F+ K Q +
Sbjct: 431 QSEETRAEVMNLCMVPLNIVSPQGNKPLMGIIQDTLCGIYKICRKDVFITKE--QVMNTL 488
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGFD----------SCGDRYLIKKS 500
P +P P + + R WT QI+ LP G + +K
Sbjct: 489 LWVPDWDGVVPPPTIVRPR--PMWTGEQIISMALPAGLNLFRKASTHNPPSDQGLFVKGG 546
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G F++ + + ++ SI+ EKG E + FF++ Q ++ L +GFSV + D
Sbjct: 547 ELMYGLFNKKIVGAGPQGVIHSIYNEKGWEAAVAFFNAAQRIVCFWLLHNGFSVGIGDTI 606
Query: 561 LSKAALWNIQKEIQALYSLLYH--RMSTQNELVDL-----------QIENHIRHVKMLVA 607
K I+ I + + + +N+L L ++ N + +
Sbjct: 607 PDKDTTEQIETVINEQKAEVEKPTAQAQENKLEALPGMSIRETFENKVSNALNEARNRAG 666
Query: 608 KFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
K S + + S S + + Q +G Q S GK HF +
Sbjct: 667 KVTEDSLKDLNNAIQMARSGSKGSAINISQMTAAVG-QQSVEGKRIPFGFKYRSLPHFTK 725
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
D P A+ G ++ GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 726 ----DDYSPEAR-GFVENSCLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 780
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L DV+ YDGTVRN + I+QF Y
Sbjct: 781 LEDVMAKYDGTVRNSLGD-IVQFVYG 805
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 163/648 (25%), Positives = 277/648 (42%), Gaps = 84/648 (12%)
Query: 162 DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE------ 215
D + DL++ +++ V + R ++G P E + LQ + +++
Sbjct: 260 DASTRSEDDLTVKLMEIVRTNKNLERQEQNGAPQHVILEF-TELLQYHIMTFMDNTVAGM 318
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
R +S R + + +S+ K ++R + K FS+R+VIT D ++E+
Sbjct: 319 PRALTRSGRSIKS---ISE----RLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDEL 371
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---------- 325
GVP+ IA +T+ E V +NI LQ LVDN + + Y +RE +
Sbjct: 372 GVPWSIALNMTYPETVTPYNIERLQRLVDNGPHPPPGETGARYIIREDGQRLDLRFLKKA 431
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R +++GD V NR P+ HK S+ V + T ++N + P +AD
Sbjct: 432 SEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNAD 491
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD +++ PQS KAEV EL V K ++S + + D LL +++ K+ F+
Sbjct: 492 FDGDEMNMHLPQSYETKAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFI 551
Query: 445 DKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPP--------------- 486
K + M+ +P+PA+ K + WT Q+ +LP
Sbjct: 552 PKDVFMNIIMWLEDWDGKIPKPAILKPQ--PLWTGKQVFSMMLPKVNLLRTSAWARDADD 609
Query: 487 ---GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLL 543
D G R I++ E+L G + T+ S ++ + E GP Q L+
Sbjct: 610 VTFSVDDTGVR--IEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQTLV 667
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ-------- 594
L GF+V + D ++ I I + + + QN ++LQ
Sbjct: 668 NYWLLHHGFTVGIADTIADDETMFTINNTITKAKADVKEVIKQAQNNELELQPGMTMQQS 727
Query: 595 -------IENHIRHVKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRG 646
I N R A+ LK ++ + ++ + S + + Q +G Q + G
Sbjct: 728 FEQKVNQILNKARDNAGNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQQ-NVEG 786
Query: 647 K-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
K F +TL HF + ++ G ++ + GL P E H++ RE
Sbjct: 787 KRIPYGFKGRTL-----PHFSKD-----DFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 836
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ SE G + + L+ + DVV+ YDGTVRN + +IQF Y
Sbjct: 837 GLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGD-VIQFLYG 883
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 178/704 (25%), Positives = 309/704 (43%), Gaps = 77/704 (10%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDI 160
K +GV ++L +++E L++IP+ + L F + + IL LPVPP + P I
Sbjct: 182 KENGVLEKL--DPMKIRERLEKIPDSDLELLGWDPKFARPEWAILTVLPVPPPQVR-PSI 238
Query: 161 SDGVSTMSSDLSIAMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
S D L +++ E +R++ SG P+ ++ + LQ V Y
Sbjct: 239 QLETGQRSEDDLTHKLVDIVRVNEKLRTAIDSGAPSSVVDQL-WDLLQYHVATYFN--NE 295
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEI 275
+ V R G P T L+ F SG FSSR+VI+ D +NE+
Sbjct: 296 LPNLPPVKHRSG---RPLKTLAQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLSINEV 352
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSS--YSLREGSKG 326
GVP ++A+ +T V NI ++LV N + Y DG R+ +
Sbjct: 353 GVPIDVAKILTVPMTVTEWNIEMARQLVLNGPEVWPGANYVVYPDGRRVDLRYFRDRREL 412
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L PG +V R +M+GD V NR P+ H+ S+ V V T +++ +C P +ADF
Sbjct: 413 ANKLAPGFIVERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADF 472
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDK 446
DGD ++L PQ+ A+AE L V+ +++ G + D + ++ +K D
Sbjct: 473 DGDEMNLHVPQNEEARAEAKTLMLVQNHIITPRYGGPIIGARQDYITGGYLLTRK---DT 529
Query: 447 AFTQQLAMFALSP------LPRPALSKARCSARWTALQILQSVLPPGF---------DSC 491
++L M+ L+ + PA+ + WT Q++ +LP +SC
Sbjct: 530 FVNKELLMYLLAAANYDGEIDEPAIMHPK--ELWTGKQVVSMLLPKDLNWVQPTAIKESC 587
Query: 492 GDRY--------LIKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPL 542
D Y ++ + G D+ +I + ++ + + G + ++ DS+
Sbjct: 588 KDPYNCYTDEYIVVVNGYMATGVLDKKSIGAEQVDSLWHVVVKRYGNDYARKWVDSVLRA 647
Query: 543 LMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE---------LVDL 593
L+ L GF++ ++ + + + ++K + ++ + E V+
Sbjct: 648 LLRFLDLRGFTMGIDSLEMPRESYNELEKLYEESERKVFDYIQRFREGKLEAEPGLTVEE 707
Query: 594 QIENHI-------RHVKMLVA-KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDR 645
+EN I R VA K+I K + + + ++ + Q +G Q + R
Sbjct: 708 TLENDITIELSRVREAAARVAEKYINKDGEAYIMAKTGARGSIVNITQMVAMIG-QQTIR 766
Query: 646 GKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVR 705
G+ + + +HFE P DL P AK G ++ F GL P E H+ R+ +V
Sbjct: 767 GERFKRGFTGRTTAHFE---PGDLG-PMAK-GFVRNNFKVGLTPVEFFFHAAGGRDGLVD 821
Query: 706 SSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ G + + L+ L+D+ + YDGTVRN S SIIQ YA
Sbjct: 822 TAVRTAQSGYMQRRLINALQDIYVAYDGTVRN-ASGSIIQTKYA 864
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHA---------SQLANPFLGLPLEFGKCESCGTSE 64
I I+F + + I + S+ + + S L + LG+ +CE+CG +
Sbjct: 20 IKAIKFSILSPDVIRSMSVMEITTSETYDEAGRPMVGGLMDRRLGVVEPGARCETCG-NP 78
Query: 65 PGKCEGHFGYIELPIPIYH 83
P KC GHFG IEL P+ H
Sbjct: 79 PDKCPGHFGRIELARPVIH 97
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 140/553 (25%), Positives = 249/553 (45%), Gaps = 60/553 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++E+GVP+ IA +T+ E V HN +LQ+LV+N
Sbjct: 266 RVRGNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHNYKWLQQLVEN 325
Query: 306 KLCLTYSDGSSSYSLREGSK--GHTFLRP--------GQVVHRRIMDGDTVFINRPPTTH 355
+ Y +RE + FLR G V R +++GD V NR P+ H
Sbjct: 326 GPHPPAGQTGAKYIIREDGQRLDLRFLRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLH 385
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ V + T ++N + P +ADFDGD +++ PQ+ + E E+ V + +
Sbjct: 386 KMSMMGHKVRILPYSTFRLNLSVTSPYNADFDGDEMNMHVPQTPETRTETREIMMVPRNI 445
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCS 471
+S + + D LL ++M K+ F++K + M+ +P PA+ K +
Sbjct: 446 VSPQANKPVIGIVQDTLLGCRLMTKRDTFIEKDLFMNILMWLEDWDGKIPMPAILKPK-- 503
Query: 472 ARWTALQILQSVLPP----------------GFDSCGDRYLIKKSEVLKGDFDRDTIPSV 515
WT Q+ +P F + LI+ E+L G + T+ +
Sbjct: 504 PLWTGKQVYNLFMPRVNIRRQSAWYKDNEPLDFSPSDSQVLIQNGELLTGTLCKKTLGAS 563
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI------ 569
++ I+ E+GPE F Q L GFS+ + D +++ A NI
Sbjct: 564 AGSLIHVIWMEEGPEAARAFLSQSQYTTNHWLLQHGFSIGIGD-TVADAKTMNIISETIA 622
Query: 570 --QKEIQALYSLLYHR----------MSTQNELVDLQIENHIRHVKMLVAKFIL-KSSTL 616
+++++ L L +R M + + V+ Q+ N R +A+ L ++ +
Sbjct: 623 EAKEKVKLLTEKLQNRDLEARPGMTMMESFEQQVN-QVLNTARDDAGKLAQSSLDDTNNV 681
Query: 617 GYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKY 676
++ + S + + Q +G Q + GK HF + D P ++
Sbjct: 682 VRMVTAGSKGSFINISQMIACVG-QQNVEGKRIPFGFQRRTLPHFTK----DDLGPESR- 735
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ + GL P E H++ RE ++ ++ S G + + L+ + D++I YDGTVR
Sbjct: 736 GFVENSYLRGLTPQELFFHAMGGREGLIDTAVKTSSTGYIQRRLVKAMEDLMIKYDGTVR 795
Query: 737 NVCSNSIIQFDYA 749
+ S++QF Y
Sbjct: 796 -TANGSVVQFLYG 807
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 182/712 (25%), Positives = 305/712 (42%), Gaps = 110/712 (15%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
KG P+ YI YLP PP C+ P + + DL++ L +++ +IR+
Sbjct: 247 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMDSQSNEDDLTVK-LTEIVWTSSMIRAGIVKG 303
Query: 194 PNFESQEVESNDLQLAVGQYLEVR----------GTAKSSRDVDARFGVSQDPNSTTKAW 243
+ + + + LQL+V Y+ G AKSS+ + A K
Sbjct: 304 ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFC-------QRLKGK 356
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+LV
Sbjct: 357 QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLV 416
Query: 304 DNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRP 351
N + ++Y +++ G LR G VV R I DGD V NR
Sbjct: 417 VNGPDI---HPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQ 473
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V
Sbjct: 474 PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 533
Query: 412 EKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPAL 465
+ LL+ +G + D + S + K F D+A Q L+M + + +P P +
Sbjct: 534 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTI 593
Query: 466 SKARCSARWTALQILQSVLPP--------GFDSCGDRY------------------LIKK 499
K WT Q+ ++ P D+ + +I+
Sbjct: 594 FKP--VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRG 651
Query: 500 SEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
S++L G D+ T+ + + +I + GP+E + + L L GFS+ + D
Sbjct: 652 SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711
Query: 559 FSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------- 598
+ + + ++ Y LY+R + TQ NE L+ +
Sbjct: 712 VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771
Query: 599 -----IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
IR + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 772 VGDVCIRELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL 827
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E
Sbjct: 828 -----PHFTK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAET 877
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF Y + + + +PV
Sbjct: 878 GYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPV 928
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 165/647 (25%), Positives = 282/647 (43%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPDHIARELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++ V N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTQFNISRLKQFVTNGPEMHPGARYIIRENNERIDLRYHKDTSGIALKTGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYDADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS +AE+ L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHAPQSEETRAELSRLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT QI+ VLPP
Sbjct: 464 DVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKASQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLID---------SKSDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ S+T L D + S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGSATENSLKDINNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
Length = 1390
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 212/806 (26%), Positives = 333/806 (41%), Gaps = 128/806 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGP--DVHP 416
Query: 314 GSS-------------SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
G++ Y RE K L+ G +V R ++DGD V NR P+ HK S+
Sbjct: 417 GANFIQQRHMQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIM 474
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
A V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ N
Sbjct: 475 AHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRN 534
Query: 421 GNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCS 471
G + D L ++ K F D+A Q+ L LP P + K
Sbjct: 535 GEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--V 592
Query: 472 ARWTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDR 509
WT QI +L P D+ CG D Y+ I+ SE++ G D+
Sbjct: 593 TLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCTNDSYVTIQNSELMCGSMDK 652
Query: 510 DTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED---------- 558
T+ S N I + + G E + L L L GFS+ + D
Sbjct: 653 GTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKA 712
Query: 559 -FSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK--- 612
+ L A + I+AL + L T E ++ I + ++ L+
Sbjct: 713 KYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELD 772
Query: 613 ---SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
S L SK S + V Q G ++ D F +++L HFE+
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHS 825
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L
Sbjct: 826 KL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 880
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS 785
D+ YD TVR+ + IIQF Y + ++ EP+ Y + +
Sbjct: 881 DLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQSERA 939
Query: 786 PSSN----NSWELMK--EILLCRVSF 805
S N + +MK E L C+ SF
Sbjct: 940 LSKNELTLTTEAIMKKNEFLCCQDSF 965
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 170/711 (23%), Positives = 291/711 (40%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++++ S E+LK I +E L F + D I+ LPVPP +
Sbjct: 197 HVNEDSQEKKMILSAERAWEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPA 256
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E++R+ +SG F + ND+
Sbjct: 257 VIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVILENIKMLQFHVATLVDNDMP 316
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 317 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 363
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +Q LV D LR
Sbjct: 364 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERIDLR 423
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 424 FHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 483
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 484 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 543
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K L MF S +P+P + K + WT Q+ ++P +
Sbjct: 544 RDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPK--PLWTGKQLFSLIIPGNVNMIRTHST 601
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G + F
Sbjct: 602 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRF 661
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRMS---T 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 662 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 721
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 722 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 781
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 782 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 835
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 885
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 182/712 (25%), Positives = 305/712 (42%), Gaps = 110/712 (15%)
Query: 134 GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGT 193
KG P+ YI YLP PP C+ P + + DL++ L +++ +IR+
Sbjct: 247 AKGGRPE-MYIWRYLPAPPVCIR-PSVMMDSQSNEDDLTVK-LTEIVWTSSMIRAGIVKG 303
Query: 194 PNFESQEVESNDLQLAVGQYLEVR----------GTAKSSRDVDARFGVSQDPNSTTKAW 243
+ + + + LQL+V Y+ G AKSS+ + A K
Sbjct: 304 ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFC-------QRLKGK 356
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
+ R K FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+LV
Sbjct: 357 QGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLV 416
Query: 304 DNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRRIMDGDTVFINRP 351
N + ++Y +++ G LR G VV R I DGD V NR
Sbjct: 417 VNGPDI---HPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQ 473
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
P+ H+ S+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V
Sbjct: 474 PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 533
Query: 412 EKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPAL 465
+ LL+ +G + D + S + K F D+A Q L+M + + +P P +
Sbjct: 534 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTI 593
Query: 466 SKARCSARWTALQILQSVLPP--------GFDSCGDRY------------------LIKK 499
K WT Q+ ++ P D+ + +I+
Sbjct: 594 FKP--VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRG 651
Query: 500 SEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
S++L G D+ T+ + + +I + GP+E + + L L GFS+ + D
Sbjct: 652 SKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND 711
Query: 559 FSLSKAALWNIQKEIQALYSL------LYHR--MSTQ---NELVDLQIENH--------- 598
+ + + ++ Y LY+R + TQ NE L+ +
Sbjct: 712 VTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREE 771
Query: 599 -----IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
IR + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 772 VGDVCIRELDSLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGHRVPD--GFQDRSL 827
Query: 654 VEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP 713
HF + + P +K G ++ FF GL P E + H+IS RE +V ++ +E
Sbjct: 828 -----PHFTK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAET 877
Query: 714 GTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
G + + LM L D+ YD TVRN SN I+QF Y + + + +PV
Sbjct: 878 GYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPV 928
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 187/765 (24%), Positives = 316/765 (41%), Gaps = 83/765 (10%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y PS I L + A D ++++ + V E+LK I +E L F +
Sbjct: 172 YQPS-IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARP 230
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I+ LPVPP + + G + DL+ + + E++R+ + G E
Sbjct: 231 DWMIVTVLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAE 290
Query: 201 VESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
LQ V +++ + G K+ + S P KA L+ ++R + K
Sbjct: 291 -NIRLLQFHVATFVDNDMPGMPKAMQK-------SGKPLKAIKARLKGKEGRIRGNLMGK 342
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------ 308
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 343 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAK 402
Query: 309 LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
D LR K L+ G V R + D D V NR PT HK S+ V V
Sbjct: 403 YIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVL 462
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N P +ADFDGD ++L PQS+ +AEV + +Q+++ + +
Sbjct: 463 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGI 522
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSV 483
D L +++ M K+ FL K L MF + +P+P + K + WT QI +
Sbjct: 523 VQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQ--PLWTGKQIFTLI 580
Query: 484 LPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
+P + S GD + +++ E+L G + ++ + ++
Sbjct: 581 IPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHI 640
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLL- 580
E G E F+ ++Q ++ L +G S+ + D IQ+ I +A ++
Sbjct: 641 CMLELGHETAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIE 700
Query: 581 ----YHRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSD 625
H M T + EN + + K + + + L ++ + S
Sbjct: 701 VIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSK 760
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q +G Q + GK + HF + +Y G ++ +
Sbjct: 761 GSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLA 814
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ
Sbjct: 815 GLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQ 873
Query: 746 FDYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYKAVLDSSPSS 788
Y + AGE V L +SN A++ PS+
Sbjct: 874 LRYGEDGL-------AGETVEFQNLPTVKLSNKAFEKKFKFDPSN 911
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
Length = 1390
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 211/806 (26%), Positives = 334/806 (41%), Gaps = 128/806 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L +GK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGP--DVHP 416
Query: 314 GSS-------------SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
G++ Y RE K L+ G +V R ++DGD V NR P+ HK S+
Sbjct: 417 GANFIQQRHMQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIM 474
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
A V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ N
Sbjct: 475 AHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRN 534
Query: 421 GNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCS 471
G + D L ++ K F D+A Q+ L LP P + K
Sbjct: 535 GEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--V 592
Query: 472 ARWTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDR 509
WT QI +L P D+ CG D Y+ I+ SE++ G D+
Sbjct: 593 TLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDK 652
Query: 510 DTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED---------- 558
T+ S N I + + G E + L L L GFS+ + D
Sbjct: 653 GTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKA 712
Query: 559 -FSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK--- 612
+ L A + I+AL + L T E ++ I + ++ L+
Sbjct: 713 KYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELD 772
Query: 613 ---SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
S L SK S + V Q G ++ D F +++L HFE+
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHS 825
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L
Sbjct: 826 KL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 880
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS 785
D+ YD TVR+ + IIQF Y + ++ EP+ Y + +
Sbjct: 881 DLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQTEPA 939
Query: 786 PSSNN----SWELMK--EILLCRVSF 805
S N+ + +MK E L C+ SF
Sbjct: 940 LSKNDLTLTAEAIMKKNEFLCCQDSF 965
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 178/726 (24%), Positives = 309/726 (42%), Gaps = 79/726 (10%)
Query: 83 HPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-D 141
H I L + A +I D +++ + V E+ KRI +E + L F + D
Sbjct: 175 HQPIIRRNGLELTAEWKKINEDSQERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPD 234
Query: 142 GYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
I+ LPVPP + + G + DL+ + + + R+ G P E
Sbjct: 235 WMIITCLPVPPLHVRPSVVMHGSARSQDDLTHKLADIIKANNNLQRNESCGAPAHVITE- 293
Query: 202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
++ LQ V EV G K+ + S P + K L+ ++R + K
Sbjct: 294 DTRMLQFHVTTLTDNEVPGMPKAMQK-------SGRPLKSIKQRLKGKEGRIRGNLMGKR 346
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VIT D+ ++++GVP IAQ +++ E V NI+ + LV + + G+
Sbjct: 347 VDFSARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNIDRMYVLV--RRGPDHYPGA 404
Query: 316 SSYSLRE----------GSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
Y +RE S+ L G V R I + D + NR PT HK S+ V
Sbjct: 405 K-YVIRESGERINLKFRASRDDLTLHFGDKVERHIQNDDIIVFNRQPTLHKMSMMGHRVR 463
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQSL ++AE+ E+ V +Q+++ + +
Sbjct: 464 ILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESRAEITEICMVPRQIVTPQSNKPVM 523
Query: 426 QLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D+L ++ K + FL+K L M+ + +P+PA+ R WT QI
Sbjct: 524 GIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPNWNGKMPQPAI--LRPKELWTGKQIFS 581
Query: 482 SVLPPG--------------------FDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
++P F S GD + LI+ EV+ G + T+ + +V
Sbjct: 582 LIIPGNVNLIRTHSTHPDDEDKGPYKFISPGDTKVLIEHGEVISGILCKRTLGTSSGSLV 641
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSL 579
IF E G E +F+ ++Q ++ L +G S+ + D +A +IQ I +A +
Sbjct: 642 HVIFNELGHEVARQFYGNIQTVVNNWLLIEGHSIGIGDSIADEATYQDIQSTILKAKQDV 701
Query: 580 LYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSS----------------TLGYLIDSK 623
+ N+ ++ N +R IL + ++ +
Sbjct: 702 VEVIEKAHNDELEPTPGNTLRKTFENQVNRILNDARDKTGSSAQKSLSNFNNFKAMVVAG 761
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
S + + Q +G Q + GK HF + +Y G ++ +
Sbjct: 762 SKGSKINISQVIAVVG-QQNVEGKRIPFGFRHRTLPHF-----IQDDYGPESRGFVENSY 815
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN + +
Sbjct: 816 LAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRN-ANMQL 874
Query: 744 IQFDYA 749
IQ Y
Sbjct: 875 IQLCYG 880
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 164 bits (416), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 191/775 (24%), Positives = 324/775 (41%), Gaps = 95/775 (12%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELV---------------DN--KLCLTYSDGSSSYSLREGSK 325
+TF E V NI+ LQELV DN ++ L + S L+ G K
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 326 GHTFLRPGQV-----VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
P Q V R + DGD V NR PT HK S+ V + T ++N +
Sbjct: 446 A-----PSQSAWIIGVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTT 500
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQSL +AE+ EL V + +++ + + + D L +++ K
Sbjct: 501 PYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTK 560
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC----- 491
+ FL++ L MF + +P+PA+ K R WT QI S++ PG +C
Sbjct: 561 RDVFLERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHS 617
Query: 492 ----------------GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 534
GD + +++ E++ G + ++ + +V + E G +
Sbjct: 618 THPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRL 677
Query: 535 FFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDL 593
F+ ++Q ++ L +G ++ + D +IQ I +A ++ N ++
Sbjct: 678 FYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEP 737
Query: 594 QIENHIRHVKMLVAKFIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKF 648
N +R IL K+ + S+ ++ S VV A + +S
Sbjct: 738 TPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAV 797
Query: 649 YSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
+ VE F R P + +Y G ++ + GL P E H++ RE +
Sbjct: 798 VGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL 857
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
+ ++ +E G + + L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 858 IDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 911
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Cricetulus griseus]
Length = 1280
Score = 164 bits (416), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 199/760 (26%), Positives = 314/760 (41%), Gaps = 122/760 (16%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F+ I+++ + LL E V + KRIP E L AGK P D
Sbjct: 194 LQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGK---PSD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K FS R+VI+ D R++E+ VP +A+ +TF E+VN NIN+L++LV N
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGP--DVHP 416
Query: 314 GSS-------------SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
G++ Y RE K L+ G +V R ++DGD V NR P+ HK S+
Sbjct: 417 GANFIQQRHMQMKRFLKYGNRE--KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIM 474
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
A V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ N
Sbjct: 475 AHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRN 534
Query: 421 GNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP--------LPRPALSKARCS 471
G + D L ++ K F D+A Q+ L LP P + K
Sbjct: 535 GEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKP--V 592
Query: 472 ARWTALQILQSVLPPGFDS-------------CG--------DRYL-IKKSEVLKGDFDR 509
WT QI +L P DS CG D Y+ I+ SE++ G D+
Sbjct: 593 TLWTGKQIFSIILRPSDDSPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDK 652
Query: 510 DTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWN 568
T+ S N I + + G E + L L L GFS+ + D + + L
Sbjct: 653 GTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLL-- 710
Query: 569 IQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK-----FILK----------S 613
+A Y LL +E ++ ++ A+ ILK S
Sbjct: 711 -----KAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGS 765
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGL--------QLSDRGKFYSKTLVEDIASHFERIY 665
+ L L S S ++ + F+ + Q + G HFE+
Sbjct: 766 ACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHS 825
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P AK + F+ GL P E H+++ RE +V ++ +E G + + L+ L
Sbjct: 826 KL----PAAKE-FVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 880
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
D+ YD TVR+ + IIQF Y + ++ EP+
Sbjct: 881 DLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 171/711 (24%), Positives = 290/711 (40%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++ + S E+LK I +E L F + D I+ LPVPP +
Sbjct: 196 HVNEDSQEKKTILSAERAFEILKHIKDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPA 255
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
I G + DL+ + + E++R+ +SG F + ND+
Sbjct: 256 VIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENIKMLQFHVATLVDNDMP 315
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 316 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +Q LV D LR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 423 FHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K L MF S +P+P + K + WT Q+ ++P +
Sbjct: 543 RDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPK--PLWTGKQLFSLIIPGNVNMIRTHST 600
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G E F
Sbjct: 601 HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF 660
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRMS---T 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 661 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 720
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 721 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 780
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 781 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 884
>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
Length = 870
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/544 (25%), Positives = 248/544 (45%), Gaps = 51/544 (9%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++++GVP IA+ +++ E V +NI L E V N
Sbjct: 148 RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLSYPEIVTPYNIQKLTEYVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R +MD D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T ++N + P +ADFDGD ++L PQS +AE+ ++ +V Q++S
Sbjct: 268 MMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 419 HNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSA 472
+ + + D L ++ M + F++ + Q + M P +P+PA+ K +
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDTFVE--YDQVMNMCFWIPQWDGVVPQPAILKPK--P 383
Query: 473 RWTALQILQSVLPPG----------FDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
WT Q++ +P G LI E++ G ++ T+ + ++ +
Sbjct: 384 LWTGKQMMSLCIPKGIFLQRLDGSLLSPKDSGMLIVDGEIMFGVVNKATVGATAGGLIHT 443
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH 582
+ EKGP+ + F ++Q ++ L +GFS+ + D + I + I +
Sbjct: 444 VMREKGPQVCAQMFGNIQKVVNYWLLHNGFSIGIGDAIADTETMKTITETIGVAKEKVQE 503
Query: 583 R-MSTQNELVDLQ---------------IENHIRHVKMLVAKFILK-SSTLGYLIDSKSD 625
+ QN +++ + I N R A+ LK ++ + ++ + S
Sbjct: 504 VILDAQNNILEPEPGMTVRESFEQKVSKILNEARDTAGKSAESSLKEANNVKQMVTAGSK 563
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q+ + GK + + HF + +Y G ++ +
Sbjct: 564 GSYINISQMSACVGQQIVE-GKRINFGFSDRSLPHFTKD-----DYSAESKGFVENSYLR 617
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H+++ RE ++ ++ +E G + + L+ L D+++ YDGT RN + IIQ
Sbjct: 618 GLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGD-IIQ 676
Query: 746 FDYA 749
F Y
Sbjct: 677 FIYG 680
>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
Length = 1459
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 178/708 (25%), Positives = 302/708 (42%), Gaps = 115/708 (16%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI Y+P PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYIPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGIEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQ+ V Y+ + G++ V G Q K + R
Sbjct: 314 EHWDYLQMTVAMYINSDSINPAMLPGSSTGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +TF E+V +NI L++LV N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPG 429
Query: 306 KLCLTYSDGSSSYSLREGSKGH--TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + + +LR G + L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKKNEEARRNLRYGDRQKLANNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTAL 477
+ D + S + K F DKA TQ L+M + L P PA+ K C WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFFDKASLTQLLSMMSDGSLQFDIPPPAIMKP-CYL-WTGK 607
Query: 478 QILQSVLPP--------GFDSCGDRY-------------------LIKKSEVLKGDFDRD 510
Q+ ++ P D+ Y +++ S++L G D+
Sbjct: 608 QVFSLLIKPNKNSPVKINLDAKNKVYIPPKQKHYPNEMSQNDGFVIVRGSQILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + + ++
Sbjct: 668 VLGDGKKHSVFYTILRDFGPQEAASAMNRMAKLCARYLGNRGFSIGISDVTPAD----DL 723
Query: 570 QKEIQALYSLLYHRMSTQNELVDL----QIENH--------------------------- 598
+++ + L + Y + +EL+DL ++E
Sbjct: 724 KQKKEDLVEIAYAKC---DELIDLYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDV 780
Query: 599 -IRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
I + L A I+ +T G + + S + VV Q G ++ D F ++L
Sbjct: 781 CINELDNLNAPLIM--ATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL---- 832
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G +
Sbjct: 833 -PHF----PKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMS 886
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+ LM L D+ YD TVR SN I+QF Y + + +PV
Sbjct: 887 RRLMKSLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPLEMEGNAQPV 933
>gi|83320474|gb|ABC02864.1| RNA polymerase II largest subunit, partial [Olpidium brassicae]
Length = 585
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 214/461 (46%), Gaps = 45/461 (9%)
Query: 148 LPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQ 207
L VPP + DG S DL+ + + + R G P +E ES LQ
Sbjct: 4 LAVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANANVKRCETEGAPAHVIEEFES-LLQ 62
Query: 208 LAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSR 261
V Y+ E+ G ++ + S P + +A L+ ++R + K FS+R
Sbjct: 63 FHVATYMNNELAGQPQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 115
Query: 262 SVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------KLCLTYSDGS 315
+VITGD ++E+GVP IA+ +TF E V +NI+ +QELV N D
Sbjct: 116 TVITGDPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRNGPNEHPGAKFVIRDTG 175
Query: 316 SSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKI 374
LR + G L+ G V R ++DGD + NR P+ HK S+ V V T ++
Sbjct: 176 ERIDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNRQPSLHKMSMMGHKVRVMPYSTFRL 235
Query: 375 NPLIC-GPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
N + P +ADFDGD +++ PQS+ A+AE+ E+ V KQ+++ + + D L
Sbjct: 236 NLSVSPSPYNADFDGDEMNMHVPQSIEARAEINEICMVPKQIVAPAANKPCMGIVQDTLC 295
Query: 434 SLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD 489
++ M K+ FLDKAF + M+ + LP PA+ K + WT QI +P G +
Sbjct: 296 GVRKMTKRDVFLDKAFVMNVVMWIPNWDGNLPVPAIFKPK--PLWTGKQIFSLTIPKGIN 353
Query: 490 ----------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
S GD + +I+ +VL G + T+ + ++ I+ EKGPE
Sbjct: 354 LQAFHSTHPDNEHTDISPGDTKVIIENGDVLAGIICKKTVGASPGGLIHVIWQEKGPEVC 413
Query: 533 LEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
FF+ +Q ++ L GFS+ + D + +I I
Sbjct: 414 KAFFNGVQAIVNNWLLQHGFSIGIGDTIADDKTMQHITTTI 454
>gi|358393275|gb|EHK42676.1| hypothetical protein TRIATDRAFT_86460 [Trichoderma atroviride IMI
206040]
Length = 1463
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 170/685 (24%), Positives = 286/685 (41%), Gaps = 90/685 (13%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ +G ST DL+ A L +++ +IR++ +
Sbjct: 252 GLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGAST-EDDLT-AKLAEIVYISGLIRTALN 309
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + +QL + Y L G KS R R Q
Sbjct: 310 KGKPMQTIMEQWEYMQLQIAMYVNSDVPGLNQPGFGKSIRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D +N++ VP +A+ +TF ERV HN+ L++ +
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLAINQVAVPQLVAKNLTFPERVQSHNLEKLRQCIL 419
Query: 305 NKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTH 355
N + +G+ L+ G K LR G VV R + DGD V NR P+ H
Sbjct: 420 NGPKVHPGANHVIKDNGNWKQDLQFGDKALVARDLRIGDVVERHLEDGDIVLFNRQPSLH 479
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +CGP +ADFDGD ++L PQS A+AE + L V+ L
Sbjct: 480 KLSIMSHFAKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAMTLMGVKHNL 539
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAF----TQQLAMFALSPLPRPALSKAR 469
+ NG + D + + ++ K ++ KAF T + LP P++ K
Sbjct: 540 ATPKNGEPIIAATQDFITASYLLSSKDRFYNRKAFTYICTHMMDGVVNIDLPPPSIIKP- 598
Query: 470 CSARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVLK 504
A WT QI ++ P +S C D +I+ SEV+
Sbjct: 599 -EALWTGKQIFNVLMRPNKESPVLVNLDARCREYSARPGQCPDMDPNDAWLVIRNSEVMC 657
Query: 505 GDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G D+ I S N + I + GP+ + + L L L GFS+ + D
Sbjct: 658 GRMDKSIIGSGKKNSVFYIILRDFGPDHAVAAMNRLTKLCARALGNQGFSLGVGDVFPIT 717
Query: 564 AALWNIQKEIQALYSLLYHRMST-------------QNELVDLQIENHIRHVKMLVAK-- 608
+ + +Q Y + T + +++ I + V+ +
Sbjct: 718 ELTRSRDRLVQDAYDKSDALIETFKAGKLEKAPGCDMEQTLEISISGILSKVRQQAGQQC 777
Query: 609 --FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+ +++ + +S S V Q +G Q+ G+ + HF +
Sbjct: 778 VDTLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIG-GQRVPDGFQDRSLPHFHK--- 833
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ P +K G ++ F+ GL P E H+IS RE ++ ++ +E G + + LM L D
Sbjct: 834 -NARQPASK-GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLED 891
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVN 751
+ YD TVR + I+QF + +
Sbjct: 892 LSTQYDNTVR-TSAGGIVQFQFGAD 915
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 16 GIRFGLATQKEICTASISDCSI-------SHASQLANPFLGLPL----EFGKCESCGTSE 64
GI+FG+ + ++I + + S ++ S L N L L + + GKC +C E
Sbjct: 24 GIKFGIQSNQDIVNQGVLEVSQRMLYDIDNNRSPLTNGALDLRMGTSSKSGKCGTC--QE 81
Query: 65 PGK-CEGHFGYIELPIPIYHPSHI 87
P K C GHFG++ L +P +H ++
Sbjct: 82 PLKFCIGHFGHVRLALPAFHIGYL 105
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 181/742 (24%), Positives = 303/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QEL D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELARRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
Length = 999
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 167/660 (25%), Positives = 288/660 (43%), Gaps = 132/660 (20%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++LV N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISKLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQMISMVLPPALNLVRIDGKSSQSPSER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + ++L G F++ ++ + N ++ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVADGQLLFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLED--------------FSLSKAALWNIQ-----KEIQALYSLLYHR---- 583
L +GFS+ + D KA + I ++++AL +
Sbjct: 582 LLHNGFSIGIGDTVPDINTVNAIKLEVDKKKAEVERITESAVAEDLEALPGMNVRETFES 641
Query: 584 --------------MSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVS 629
+T+N L D I N I+ +A+ K ST+ S ++
Sbjct: 642 KVSAALNGARDEAGTATENSLKD--INNAIQ-----MARAGSKGSTINI-------SQMT 687
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+V Q G ++ F +TL HF + +Y A G ++ + GL P
Sbjct: 688 AIVGQQSVEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTP 735
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 736 TEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|374629649|ref|ZP_09702034.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
gi|373907762|gb|EHQ35866.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
Length = 881
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 171/714 (23%), Positives = 303/714 (42%), Gaps = 83/714 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
+++ L++IP+E L + + +L LPVPP + I + DL+
Sbjct: 176 DIRSRLEKIPDEDLHLLGINARVARPEWTLLTVLPVPPVTMRPSIILENGQRSEDDLTHK 235
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGV 232
++ + + +G P +++ LQ V Y+ EV G +
Sbjct: 236 LVDIIRINQRFKENQDAGAPQLIIEDLWEL-LQYHVTTYMDNEVAGCPPARHR------- 287
Query: 233 SQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFE 288
S P T L+ + R K FS+R+VI+ D +NE+G+P IA ++
Sbjct: 288 SGRPLKTISQRLKGKDGRFRGSLSGKRVNFSARTVISPDPNLSINEVGIPLAIANEMSVP 347
Query: 289 ERVNVHNINYLQELVDNKLCLTY--SDGSSSYSLREGSKG-----------HTFLRPGQV 335
RV NI+ ++++V S ++Y++R + L PG
Sbjct: 348 IRVTPFNIDEVRQMVTTGPVRPNLNSPCGANYAIRPDGRRVRLTDMTRESVAEMLEPGWT 407
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R++ + D V NR P+ H+ S+ A + + D T ++NP +C P +ADFDGD ++L
Sbjct: 408 VDRQLRNTDIVLFNRQPSLHRMSIMAHRIVLMDGKTFRLNPAVCPPYNADFDGDEMNLHV 467
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFTQQLA 453
PQ+ A+AE L SV++ +LS G + D + + ++ ++F KA L
Sbjct: 468 PQTEEARAEAHMLASVQENILSPRFGGPIIGGIHDHISGIFILTHTLRWFDKKAVLYLLQ 527
Query: 454 MFALSPLPRPALSKARCSARWTALQILQSVLPPGFD------SCG----------DR--- 494
LP P + W+ Q+ +LP G + SC DR
Sbjct: 528 SSTPEHLPEPGKVEDGIDY-WSNKQVFSMILPDGLNMVYRASSCSNCDKCKQEGCDRDAF 586
Query: 495 YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
IK E++ G D+ +I + I+ I G +F D + L + + DGFS
Sbjct: 587 VRIKNGELICGTIDKKSIGAFDGVILQRIIRTAGLGRGRQFVDDVTKLSIRGIMYDGFSF 646
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRM-------------STQNELVDLQIENHIRH 601
++D L+K I + + + + R+ T E +++QI +
Sbjct: 647 GIDDEDLTKIEYRQIDEVLDSAADDVERRIRIYEDGQLEPMPGRTLEETLEMQIMQVLGK 706
Query: 602 VK----MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDI 657
+ + + + S++ + S + ++ + Q AG +G Q + RG+ ++
Sbjct: 707 ARDRTGDIAGRHLGLSNSAVVMAVSGARGSMLNLTQMAGCIG-QQAVRGERITRGYEGRT 765
Query: 658 ASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLF 717
HF++ + + +G + + GL+P E H+I RE +V ++ S+ G L
Sbjct: 766 LPHFKK-----GDRGSEAHGFVSNSYKSGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQ 820
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPA----GEPVGV 767
+ ++ L+D+ + YD TVR IIQF Y + S PA G+PV V
Sbjct: 821 RRMINALQDLKVGYDKTVR-TSGGRIIQFKYGED-----STDPAKSCYGDPVDV 868
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 17 IRFGLATQKEICTASI---------SDCSISHASQLANPFLGLPLEFGKCESCGTSEPGK 67
I FGL + K+I S+ D + L + LG+ +C++CG + +
Sbjct: 10 IEFGLLSPKDIRRTSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRCKTCG-NRASE 68
Query: 68 CEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEE 127
C GHFG+IEL P+ H+ +L ++ + G RLL S EV+++L PEE
Sbjct: 69 CPGHFGHIELAKPVI---HVGYTRLIRKLLRVSCRECG---RLLLSQDEVQKVLG--PEE 120
Query: 128 TR 129
R
Sbjct: 121 ER 122
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 153/634 (24%), Positives = 277/634 (43%), Gaps = 80/634 (12%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P ++E+++ LQ V Y+ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPEHIAKELQAL-LQYHVATYM-----GNDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L+ V N + + Y +RE + L+ G
Sbjct: 301 TYPETVTRFNISRLKAFVTNG---PEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R +MDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHLMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT Q++ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIVKPR--PRWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS 613
+ + D + I+ E+ + + + + + + + + + +S
Sbjct: 589 IGIGDTVPDVGTVEKIKLEVD-------RKKAEVERITQMAVAEDLEALPGMNVRETFES 641
Query: 614 STLGYLIDSKSDSA---------VSKVVQ--QAGFLG--LQLSDRGKFYSKTLVEDIASH 660
L ++ ++ ++ +Q +AG G + +S + VE
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 661 FE---RIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
F R P +Y A G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 702 FGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 761
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 762 IQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 158/653 (24%), Positives = 283/653 (43%), Gaps = 118/653 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V N L++LV N ++ L + ++S +L+ G K
Sbjct: 301 TYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQVISMVLPPALNLVRIDGKPSQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVVNYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI----------------------------QALYS 578
L +GFS+ + D + I+ E+ + S
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 641
Query: 579 LLYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQS 694
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ F +TL HF + +Y A G ++ + GL P E H+
Sbjct: 695 VEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHA 742
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 743 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 169/657 (25%), Positives = 287/657 (43%), Gaps = 58/657 (8%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I + LPVPP + ++ G + DL+ L ++K +R + + N +
Sbjct: 238 DWMIAQVLPVPPLAVRPAVVTFGSARNQDDLT-HKLSDIVKTNNQLRRNEA---NGAAAH 293
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGS 256
V + D++L QY + P + K L+ ++R + K
Sbjct: 294 VIAEDVKLL--QYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRV 351
Query: 257 GFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYS---- 312
FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV N+ Y
Sbjct: 352 DFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELV-NRGDSQYPGAKY 410
Query: 313 ---DGSSSYSLREGSKG-HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D + LR + L+PG V R + DGD + NR PT HK S+ V +
Sbjct: 411 IIRDNGARVDLRYHPRAADLLLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILP 470
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N + P +ADFDGD ++L PQSL KAE+ E+ V +QL++ + +
Sbjct: 471 WSTFRMNLSVTTPYNADFDGDEMNLHLPQSLETKAEISEIAMVPRQLITPQANKPVMGIV 530
Query: 429 TDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVL 484
D L ++++M K+ F++ L M + +P+PA+ K + WT Q+ ++
Sbjct: 531 QDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKIPQPAILKPK--PLWTGKQVFTLII 588
Query: 485 PPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSI 523
P + S GD + +I+ E+L G TI ++ +
Sbjct: 589 PGNVNVLRTHSTHPDDEDSGPYKWISPGDTKVIIEHGELLAGIICSKTIGRSAGNLLHVV 648
Query: 524 FFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYH 582
E G E F+ +Q + L A+G ++ + D +A +IQ+ I +A Y ++
Sbjct: 649 TLELGWEVAAHFYSHIQTTVNAWLLAEGHTIGIGDTIADQATYKDIQETIRKAKYDVVEV 708
Query: 583 RMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
N+ ++ N +R + IL + T G S S+ K + AG G
Sbjct: 709 IEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEFNNFKAMVVAGSKG 768
Query: 640 --LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEE 692
+ +S + VE F R P + +Y G ++ + GL P E
Sbjct: 769 SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEF 828
Query: 693 MTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN + ++Q Y
Sbjct: 829 FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIAQ-MVQLRYG 884
Score = 44.3 bits (103), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ--------LANPFLGLPLEFGKCESCGTSEPGKC 68
++FG+ + EI S+ + S + L +P G+ G+C +C + C
Sbjct: 18 VQFGILSPDEIKRMSVGEIEFSEIYENGKPKMGGLMDPRQGVVDRRGRCMTCAGNL-ADC 76
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHF ++EL P++H I++ LK+ Y +L I D VKE+LK+
Sbjct: 77 PGHFAHLELAKPVFHIGFITKTLKILRCVCFYCSRLLIDKD---------APRVKEILKK 127
Query: 124 IPEETRKKLA 133
R++LA
Sbjct: 128 TVGNPRRRLA 137
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 185/784 (23%), Positives = 324/784 (41%), Gaps = 93/784 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L + A + D +++ + V E+ + I +E + Y
Sbjct: 160 YQPK-IKRAGLDLTAEWKHVNEDAQEKKIPLTAERVWEIFRHISDEECYIMGMDPKYARP 218
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
D I+ LPVPP + + G + DL+ + + E+ R+ +SG E
Sbjct: 219 DWMIVTVLPVPPLAVRPAVVMFGSARNQDDLTHKLSDIIKANNELQRNEQSGAATHILLE 278
Query: 201 VESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRK 254
LQ V ++ + G K+ + S P KA L+ ++R + K
Sbjct: 279 -NVKMLQFHVATLVDNDMPGLPKAMQK-------SGRPLKAIKARLKGKEGRIRGNLMGK 330
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNK------LC 308
FS+R+VIT D R++++GVP IAQ +TF E V NI+ +QELV
Sbjct: 331 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAK 390
Query: 309 LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
D LR K L+ G V R I DGD + NR PT HK S+ V V
Sbjct: 391 YIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVL 450
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N + P +ADFDGD +++ PQS+ +AEV + +Q+++ + +
Sbjct: 451 PWSTFRMNLSVTSPYNADFDGDEMNMHIPQSMETRAEVENIHITTRQIITPQANKPVMGI 510
Query: 428 ATDALLSLKVMFKK-YFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQ 481
D L +++ M K+ FL+K Q L + P +P+PA+ K + WT Q+
Sbjct: 511 VQDTLTAVRKMTKRDVFLEKE--QMLNILMHLPIWDGKMPQPAILKPK--PLWTGKQVFS 566
Query: 482 SVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIV 520
++P + S GD + +++ +++ G + T+ + ++
Sbjct: 567 LIIPGNVNMIRTHSAHPDEEDDGPYKWISPGDTKVMVEHGDLVMGILCKKTLGTSAGSLL 626
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLL 580
F E G E +F+ ++Q ++ L +G S+ + D IQK I+ +
Sbjct: 627 HICFVELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQTYLEIQKTIKKAKEDV 686
Query: 581 Y------HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSK 623
H M T + EN + + K + + + L ++ S
Sbjct: 687 IEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSG 746
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCF 683
+ + + Q +G Q + GK + HF + +Y G ++ +
Sbjct: 747 AKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSY 800
Query: 684 FHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSI 743
GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGT+RN +
Sbjct: 801 LAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVG-QL 859
Query: 744 IQFDYAVNARKSHSLFPAGEPVGV--LAATAMSNPAYKAVLDSSPSSNN------SWELM 795
IQ Y + AGE V L +SN A++ PS+ + ++M
Sbjct: 860 IQLRYGEDGL-------AGEHVEFQSLPTVKLSNRAFEKKFKFDPSNERYLRRVFTEDIM 912
Query: 796 KEIL 799
+E++
Sbjct: 913 REVM 916
>gi|341859008|gb|AEK97414.1| ribosomal polymerase II largest subunit [Beauveria vermiconia]
Length = 954
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|341859014|gb|AEK97417.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|341858946|gb|AEK97383.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858948|gb|AEK97384.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858950|gb|AEK97385.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858954|gb|AEK97387.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858956|gb|AEK97388.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858960|gb|AEK97390.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858962|gb|AEK97391.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|336260159|ref|XP_003344876.1| hypothetical protein SMAC_06162 [Sordaria macrospora k-hell]
gi|380089075|emb|CCC13019.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1474
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 294/694 (42%), Gaps = 79/694 (11%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDL 171
+V ++ K+I E + L G P +G ++ +YLP PP C+ P + ++ D+
Sbjct: 234 KVLKLFKKITAEDCELL---GLNPSEGRPEMFLWQYLPAPPICIR-PSVQQEAASNEDDI 289
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
+ + L +++ +R S + + +QL VG Y+ +V G + R
Sbjct: 290 T-SKLSEIILYAGHLRESLLKGAALNTIMEQWEFIQLQVGMYVNSDVPGLYQPGFGKPIR 348
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
G Q K + R K FS R+VI+ D ++++ VP +A+ +T+ E
Sbjct: 349 -GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPERVAKNLTYPE 403
Query: 290 RVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKG-----HTFLRPGQVVH 337
RVN +NI L++ V N + DG ++L G + L+ G VV
Sbjct: 404 RVNRNNIEKLRKCVMNGPKVWPGAQGVIKRDGGMKFNLNFGDESIREERARELKFGDVVE 463
Query: 338 RRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQ 397
R + DGD V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ
Sbjct: 464 RHLEDGDIVLFNRQPSLHKLSIMSHRAKVRPWRTFRLNECVCTPYNADFDGDEMNLHLPQ 523
Query: 398 SLAAKAEVLEL---FSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAM 454
+ A+AE + L F LLSS +L L T + +++ + LD
Sbjct: 524 TEEARAEAINLMGDFITAAYLLSSK--DLFLDRKTFTYICTQMLLGETHLD--------- 572
Query: 455 FALSPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKG------DFD 508
LP P + K WT QI ++ P S L K++V K D D
Sbjct: 573 -----LPPPTIIKP--VEMWTGKQIFNVLMRPNKQSPVLVNLEAKNKVYKAKPGELPDMD 625
Query: 509 RDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWN 568
D V N + I + GPE + + L L L GFS+ + D SK +
Sbjct: 626 IDDCYLVKNSVFYVILRDWGPEHAAQAMNRLAKLCARTLTLRGFSIGVGDVYPSKDLTEH 685
Query: 569 IQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVKMLVAKFILK--S 613
K + Y+L ++ E ++ +I + V+ + + S
Sbjct: 686 KAKLVADAYALCDDLIAQFKSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLS 745
Query: 614 STLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNY 671
LI +KS S S V Q +G Q+ GK + + HF + +
Sbjct: 746 RNNSPLIMAKSGSKGSDINVAQMVALVGQQIIG-GKRVADGFQDRTLFHFHK----NARQ 800
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L D+ Y
Sbjct: 801 PPSK-GFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQY 859
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
D TVR N I+QF Y + + +PV
Sbjct: 860 DDTVRTSEGN-IVQFQYGADRLDPADMEGNAKPV 892
Score = 45.4 bits (106), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 16 GIRFGLATQKEICTASISDCSISHASQLAN-----------PFLGLPLEFGKCESCGTSE 64
++FG+ + ++I + + S + + N P LG + G CE+C
Sbjct: 23 ALQFGVQSHQDIVNQGVLEVSDNLLYDVENGRRTFPHGPLDPRLGTSSKTGTCETCNLPL 82
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GHFG++ LP+P++H ++ ++ T+
Sbjct: 83 QS-CAGHFGHVRLPLPVFHIGYLKYIQATL 111
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 190/736 (25%), Positives = 321/736 (43%), Gaps = 88/736 (11%)
Query: 111 LSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLSVPDISDGVST 166
L S + E+ +I +E +KL G P+ D I+ LPVPP + P +
Sbjct: 186 LVSAERIHEIFVKITDEACEKL---GLNPKLSRPDWMIITVLPVPPPTIR-PSVKFETLL 241
Query: 167 MSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSR 224
+ D L +++ +I+R + + + N LQ +G Y+ V AKS +
Sbjct: 242 RAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQINLLQYHIGSYMNNSVPSLAKSLQ 301
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
S P + K L+ ++R + K FS+R+VIT D +++E+GVP
Sbjct: 302 K-------SGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTVITPDPNIKLDELGVPLS 354
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFL 330
IA +TF E V NI Y++ L+ N Y + Y +R + + L
Sbjct: 355 IAMNLTFPEIVTSFNIEYMKFLLYNG---PYKHPGAKYLIRNDNNRIDLRYVKYLSNINL 411
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
G V R + +GD V NR P+ HK S+ V V T ++N P +ADFDGD
Sbjct: 412 ENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSATSPYNADFDGDE 471
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLDK--- 446
++L +PQ++ +K+E+ L V ++S + + D+LL S+ + K FL K
Sbjct: 472 MNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLITEKGNFLSKYEI 531
Query: 447 -AFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLP---------------PGFDS 490
A+ + ++L+ +P PA+ K R WT Q++ +++P + +
Sbjct: 532 MAYLNLIEGYSLN-IPLPAIYKPRI--LWTGKQLISTIIPCINLSRTCISHPEHEKAYVT 588
Query: 491 CGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD R +I + ++L G D+ TI + ++ I+ + GP F + Q ++ L
Sbjct: 589 SGDTRVIIFQGQLLSGMIDKRTIGATSGGLIHVIWKDIGPSACSYFISNFQIIVNNWLQL 648
Query: 550 DGFSVSL----------EDFSL-SKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENH 598
+GFSV + +D SL K A ++K I+ L S ++ ++ + +ENH
Sbjct: 649 NGFSVGIGDCIPTKMVKKDVSLIIKTAKLFVKKSIKRLLSKKFNGFFNKDS--NYNLENH 706
Query: 599 IRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS 650
+ V K + + L +I S S ++ + Q +G Q + GK
Sbjct: 707 LNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINISQIVACVG-QQNVEGKRIP 765
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+ H+ N+ G + + GL P E HS+ RE ++ ++
Sbjct: 766 FGFRKRSLPHYHY-----KNFEPETRGFVVNSYIEGLFPDEFFFHSMGGREGLIDTAIKT 820
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAA 770
SE G + + L + D+V+ YD +VRN II F Y + + L +G ++
Sbjct: 821 SETGYIQRRLSKSMEDIVVEYDFSVRN-NQQEIISFLYGEDCFDAVYLENQKIFLGKMSD 879
Query: 771 TAMSNPAYKAVLDSSP 786
M N YK V SSP
Sbjct: 880 IEM-NMVYK-VTQSSP 893
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 189/770 (24%), Positives = 324/770 (42%), Gaps = 90/770 (11%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELV---------------DN--KLCLTYSDGSSSYSLREGSK 325
+TF E V NI+ LQELV DN ++ L + S L+ G K
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
++V R + DGD V NR PT HK S+ V + T ++N + P +AD
Sbjct: 446 ACN-----KLVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNAD 500
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQSL +AE+ EL V + +++ + + + D L +++ K+ FL
Sbjct: 501 FDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 560
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC---------- 491
++ L MF + +P+PA+ K R WT QI S++ PG +C
Sbjct: 561 ERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDD 617
Query: 492 -----------GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GD + +++ E++ G + ++ + +V + E G + F+ ++
Sbjct: 618 EDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNI 677
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENH 598
Q ++ L +G ++ + D +IQ I +A ++ N ++ N
Sbjct: 678 QTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNT 737
Query: 599 IRHVKMLVAKFIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+R IL K+ + S+ ++ S VV A + +S +
Sbjct: 738 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 797
Query: 654 VEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
VE F R P + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 798 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 857
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
+E G + + L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 858 KTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 906
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 174/703 (24%), Positives = 301/703 (42%), Gaps = 105/703 (14%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLDKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL V Y+ + G++ V G Q K + R
Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +T+ E+V +N + LQEL+ N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCSARWTAL 477
+ D + S + K F D+A TQ L+M + +P PA+ K WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKP--YYLWTGK 607
Query: 478 QILQSVLPPGFDSC--------------------------GDRY-LIKKSEVLKGDFDRD 510
Q+ ++ P +S D + +I+ S++L G D+
Sbjct: 608 QVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + + ++
Sbjct: 668 VLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPAD----DL 723
Query: 570 QKEIQALYSLLYHR------------MSTQ-----NELVDLQIENHIRHVKMLVAKFILK 612
+++ + L + YH+ + TQ + ++ +I + V+ V +
Sbjct: 724 KQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIN 783
Query: 613 S----------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
+T G + + S + VV Q G ++ D F ++L HF
Sbjct: 784 ELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHF- 835
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM
Sbjct: 836 ---PKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 891
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
L D+ YD TVR +N I+QF Y + + +PV
Sbjct: 892 SLEDLSCQYDNTVR-TSANGIVQFTYGGDGLDPLEMEGNAQPV 933
>gi|341858982|gb|AEK97401.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858984|gb|AEK97402.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858986|gb|AEK97403.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858988|gb|AEK97404.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858992|gb|AEK97406.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858994|gb|AEK97407.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 189/752 (25%), Positives = 324/752 (43%), Gaps = 107/752 (14%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI YLP PP C+ P + + DL++ L +++ +IR+ + +
Sbjct: 255 YIWRYLPAPPVCIR-PSVMMDTQSNEDDLTVK-LTEIVWTSSLIRAGIEKGITINNLMEQ 312
Query: 203 SNDLQLAVGQY----------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL+V Y L G +KS++ + G Q K + R
Sbjct: 313 WDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIR---GFCQ----RLKGKQGRFRGNLS 365
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+V++ D R++E+ VP +A+ +T+ E +N LQ L+ N
Sbjct: 366 GKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + ++ +LR G K L G VV R I DGD V NR P+ H+ S+ +
Sbjct: 426 ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHF 485
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 486 AKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEP 545
Query: 424 NLQLATDALL-SLKVMFKKYFLDK-AFTQQLAMFALS----PLPRPALSKARCSARWTAL 477
+ D + S + K F D+ A Q L+M + + +P PA+ K WT
Sbjct: 546 IIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKP--VMLWTGK 603
Query: 478 QIL--------------------QSVLPP--GFD---SCGDRY-LIKKSEVLKGDFDRDT 511
Q+ ++ +PP GF S D + +I+ S++L G D+
Sbjct: 604 QLFSLLIRPNKKSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVMDKSL 663
Query: 512 I-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ + + +I + GP+E + + L + GFS+ + D + ++ L +
Sbjct: 664 LGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDV-IPRSELKQ-K 721
Query: 571 KEIQALYSLL--------YHR--MSTQ-----NELVDLQIENHIRHVKMLVAKFILK--S 613
KE+ + L Y+R + TQ + ++ +I + V+ V + +K
Sbjct: 722 KELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGEICIKELD 781
Query: 614 STLGYLIDSKSDSAVS--KVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPM 667
S LI + S S V Q +G Q+ + F ++L HF +
Sbjct: 782 SANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSL-----PHFTK---- 832
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+ P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 833 NSKTPQSK-GFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 891
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
YD TVRN SN ++QF Y + + PV + A+ D
Sbjct: 892 STQYDNTVRN-SSNGVVQFTYGGDGLDPLDMEGDARPVNF---NRQWDHAFNVTFDVKDR 947
Query: 788 SNNSWELMKEILLCRVSFNNDPIDRRVILYLN 819
+E++ V++ +P++++++ Y N
Sbjct: 948 GLKPYEILNA-----VNYVLNPLEKKLVRYSN 974
>gi|341858964|gb|AEK97392.1| ribosomal polymerase II largest subunit [Beauveria varroae]
gi|341858966|gb|AEK97393.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|341859000|gb|AEK97410.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859002|gb|AEK97411.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859006|gb|AEK97413.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|341858952|gb|AEK97386.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 952
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 166 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 224
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 225 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 277
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 278 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 337
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 338 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 397
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 398 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 457
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 458 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 515
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 516 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 575
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 576 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 633
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 634 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 692
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 693 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDT 742
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 743 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 784
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 181/742 (24%), Positives = 303/742 (40%), Gaps = 79/742 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 147 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 200
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 201 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 260
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 261 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 312
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 313 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 372
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 373 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 432
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AE +
Sbjct: 433 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEAENIH 492
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 493 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 552
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ E++
Sbjct: 553 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIM 610
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D
Sbjct: 611 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQ 670
Query: 565 ALWNIQKEIQALYSLLY------HRM---STQNELVDLQIENHIRHV--------KMLVA 607
IQ I+ + H M T + EN + +
Sbjct: 671 TYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAK 730
Query: 608 KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
K + + + L ++ S S + + Q +G Q + GK + HF +
Sbjct: 731 KSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF-----I 784
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 785 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844
Query: 728 VICYDGTVRNVCSNSIIQFDYA 749
++ YDGTVRN +IQ Y
Sbjct: 845 MVNYDGTVRNSVGQ-LIQLRYG 865
>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Monodelphis domestica]
Length = 1390
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 214/816 (26%), Positives = 336/816 (41%), Gaps = 145/816 (17%)
Query: 117 VKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V + KRIP E L AGK P D IL L VPP C+ +SD S + D
Sbjct: 223 VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSVVSDLKSGTNEDD 278
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ ++I+ R + + + LQL Y+ E+ G
Sbjct: 279 LTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP--------- 329
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P T+ ++++++ R K FS R+VI+ D R++E+ VP +A
Sbjct: 330 --LNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVA 387
Query: 283 QRITFEERVNVHNINYLQELVDNKLCLTYSDGSS-------------SYSLREGSKGHTF 329
+ +TF E+VN NIN++++LV N G++ Y RE K
Sbjct: 388 KILTFPEKVNKANINFMRKLVRNGP--EVHPGANFIQQRHMQMKRFLKYGNRE--KMAQE 443
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADFDGD
Sbjct: 444 LKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGD 503
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAF 448
++L PQ+ AKAE L L + L++ NG + D L ++ K F D+A
Sbjct: 504 EMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Query: 449 TQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPP-------------G 487
Q+ L LP P + K WT Q+ +L P G
Sbjct: 564 ACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQVFSLILQPSDENPVRANLRTKG 621
Query: 488 FDSCG--------DRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFD 537
CG D Y+ I+ SE++ G D+ T+ S N I + + G E +
Sbjct: 622 KQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQTEAADAMS 681
Query: 538 SLQPLLMENLFADGFSVSLED-----------FSLSKAALWNIQKEIQALYS--LLYHRM 584
L L L GFS+ + D + L A + I+AL + L
Sbjct: 682 RLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPG 741
Query: 585 STQNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSD----SAVSKVVQQ 634
T E ++ I + ++ L+ S + L SK S + V Q
Sbjct: 742 CTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQ 801
Query: 635 AGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMT 694
G ++ D F +++L HFE+ + P AK G + F+ GL P E
Sbjct: 802 QAISGSRVPD--GFENRSL-----PHFEKHSKL----PAAK-GFVANSFYSGLTPTEFFF 849
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARK 754
H+++ RE +V ++ +E G + + L+ L D+ YD TVR+ + IIQF Y +
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLD 908
Query: 755 SHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCR----VSFNNDPI 810
++ EP+ +K VLD+ +K + C+ +S N +
Sbjct: 909 PAAMEGKDEPL-----------EFKRVLDN----------IKAVFPCQSEPALSKNELVL 947
Query: 811 DRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLK 846
I+ N+ C CQE +K +K VS K
Sbjct: 948 TTESIMKRNEFLC----CQESFLQEIKKFIKIVSEK 979
>gi|341858968|gb|AEK97394.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|341859004|gb|AEK97412.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
Length = 1383
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 189/728 (25%), Positives = 311/728 (42%), Gaps = 105/728 (14%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDISD-GVSTMSSDL 171
V ++ ++IP+ + +A G D + I+ + VPP C+ +S+ T DL
Sbjct: 222 VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDL 278
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 279 TMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIP--------- 328
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P TT+ +++++ R K FS R+VI+ D +N++GVP +A
Sbjct: 329 --INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVA 386
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL------TYSDGSS-----SYSLREGSKGHTFLR 331
+ +T+ ERVN N+ +++ELV N + GSS +Y RE K L+
Sbjct: 387 KILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVAQELK 444
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G +V R + DGD V NR P+ HK S+ V T + N C P +ADFDGD +
Sbjct: 445 CGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEM 504
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
+L PQ+ A+AE L L + L++ NG + + D + ++ +K FL K
Sbjct: 505 NLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAM 564
Query: 451 QLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDSC--------GDR 494
QLA L+ LP PAL K R WT Q+ ++ P DS G
Sbjct: 565 QLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDSHVRLNMVNKGRN 622
Query: 495 YL-------------IKKSEVLKGDFDRDTIPSVINEIVTSI----FFEKGPEEVLEFFD 537
Y I+ SE++ G D+ T+ S + + + F E + +
Sbjct: 623 YTRNMDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGELHATKAMWRLA 682
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS-------------LLYHRM 584
+ ++N GFS + D + SK L + + + YS L
Sbjct: 683 RIASYFLQN---RGFSFGISDVTPSKKLLQHKELLLNNGYSKCNEYIEMLKAGTLQCQPG 739
Query: 585 STQNELVDLQIENHIRHVKMLVAK--FILKSSTLGYLIDSKSDSAVSKV--VQQAGFLGL 640
T E ++ + + ++ AK F T LI + S S S + Q +G
Sbjct: 740 CTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQ 799
Query: 641 QLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTR 700
Q + GK HFER + P A+ G ++ F+ GL P E H+++ R
Sbjct: 800 Q-AISGKRVPNGFENRALPHFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGR 853
Query: 701 EVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFP 760
E +V ++ +E G L + L+ L D+V+ YDGTVRN N ++ Y + S+
Sbjct: 854 EGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMET 912
Query: 761 AGEPVGVL 768
+PV ++
Sbjct: 913 RNKPVDLV 920
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 62
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 63 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 95
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
Length = 869
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 157/630 (24%), Positives = 274/630 (43%), Gaps = 73/630 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + R + G P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADIIKASQNVDRCEQEGAPAHVINEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++++GVP IA+
Sbjct: 131 -----SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDLDQVGVPRSIAR 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+T+ E V +NI+ L E V N D LR + G L+ G V
Sbjct: 186 TLTYPEVVTPYNIHRLTEYVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWXV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +D D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHXLDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMF 455
QS +AE+ + V Q+++ + + + D L ++ M K+ F D F Q + +
Sbjct: 306 QSEETRAELSXICMVPLQIITPQSNKPVMGIVQDTLCGVRKMTKRDTFCD--FDQVMNIL 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P P + K + WT Q+L +P G D L+ K
Sbjct: 364 FWIPNWNGIVPEPTIIKPK--PLWTGKQMLSMCIPDGIHLRRLDKSPISPDDDGMLVVKG 421
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ TI + ++ IF EKG + F ++Q ++ L +GFS+ + D
Sbjct: 422 EIMYGVVNKKTIGASAGGLIDIIFKEKGAYICRDXFGNIQKVVNFWLLHNGFSIGIGDTI 481
Query: 561 LSKAALWNIQKEIQALYSLLYHRMS-------------TQNELVDLQIENHIRHVKMLVA 607
+ I + I+ + +S T E + + + +
Sbjct: 482 ADADTMKTITETIEEARXQVSQIISDAERNKLERAQGMTLRETFEQNVSRTLNQARDNAG 541
Query: 608 KFILKS----STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
K+ KS + + ++ S S + + Q + +G Q+ + + F +TL
Sbjct: 542 KYAEKSLKEXNNVKQMVISGSKGSFINISQMSACVGQQIVEGXRIPFGFADRTL-----P 596
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H+++ RE ++ ++ + G + +
Sbjct: 597 HFAKD-----DYSPESKGFVENSYLRGLSPQEFFFHAMAGREGLIDTAVKTAXTGYIQRR 651
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L DV++ YDGTVRN + I+QF Y
Sbjct: 652 LVKALEDVMVHYDGTVRNSLGD-ILQFVYG 680
>gi|257386581|ref|YP_003176354.1| DNA-directed RNA polymerase subunit A' [Halomicrobium mukohataei
DSM 12286]
gi|257168888|gb|ACV46647.1| DNA-directed RNA polymerase subunit A' [Halomicrobium mukohataei
DSM 12286]
Length = 972
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 174/681 (25%), Positives = 294/681 (43%), Gaps = 70/681 (10%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSI 173
++++ + IP+E + L K + + IL LPVPP + P I+ D DL+
Sbjct: 251 DIRDWFEDIPDEDVEVLGMKPARSRPEWMILTVLPVPP-VTARPSITLDNGQRSEDDLTH 309
Query: 174 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFG 231
++ + + + +G P +++ LQ V ++ E+ GT +
Sbjct: 310 KLVDIIRINQRFMENREAGAPQLIIEDLWEL-LQYHVTTFMDNEISGTPPARH------- 361
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P T L+ F SG FS+R+VI+ D +NE+GVP +A+ +T
Sbjct: 362 RSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQ 421
Query: 288 EERVNVHNINYLQELVDN----KLCLTYSDGSSSYSLREGSKGHTFL----RPGQVVHRR 339
VN N++ + V N Y L+ K L PG V R
Sbjct: 422 TMNVNERNLDNARRYVANGPEAHPGANYVKRPDGRRLKVTEKNCEELAEKVEPGWEVSRH 481
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
++DGD + NR P+ H+ S+ A V V T ++N +C P +ADFDGD +++ Q+
Sbjct: 482 MIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTTVCPPYNADFDGDEMNMHALQNE 541
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMF---A 456
A+AE L V++Q+LS G N+ A +S + + TQ L +
Sbjct: 542 EARAEARVLMRVQEQILSPRFGE-NIIGAIQDHISGTYLLTHTNPEFNETQALDLLRATR 600
Query: 457 LSPLPRPALSKARCSARWTALQILQSVLPPGFD-----SCGDRYLIKKSEVLKGDFDRDT 511
+ LP + + WT I +LP D GD +I+ ++++G D
Sbjct: 601 IDELPPESGVDDDGTPYWTGRDIFSELLPDDLDLTFTSEAGDDVIIEDGQLVEGTIDDSA 660
Query: 512 IPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQK 571
+ EIV +I E F + + L M ++ GFS+ ++D S+ +AA I +
Sbjct: 661 VGGFGGEIVDTITKEYSNTRARIFINEIAALAMRSIMHFGFSIGIDDESVPEAAEAQITE 720
Query: 572 EIQALYSLLYHRMST--QNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSA-- 627
I Y + + T + EL L ++M + + TLG DS D A
Sbjct: 721 AIDNAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQ------TLGKARDSAGDIAGD 774
Query: 628 -------------------VSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
+ + Q AG +G Q RG+ ++ + SHF++ D
Sbjct: 775 HFDDDNPAVVMAESGARGSMLNLTQMAGCVGQQAV-RGERINRGYEDRTLSHFKQ---ND 830
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
L+ + +G ++ + GL+P E H++ RE +V ++ S+ G L + L+ L ++
Sbjct: 831 LS--SDAHGFVEASYRSGLNPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELE 888
Query: 729 ICYDGTVRNVCSNSIIQFDYA 749
YDGTVR+ N I+QF++
Sbjct: 889 AQYDGTVRDTSDN-IVQFEFG 908
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 282/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI L++LV N + + Y +RE ++ LR G
Sbjct: 301 TYPETVTRFNIERLKQLVTNGPQM---HPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKSSQPPLERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L ++ + YD TVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEITVKYDTTVRDSRGN-ILQFIYG 794
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|388857575|emb|CCF48724.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Ustilago hordei]
Length = 1400
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 183/701 (26%), Positives = 302/701 (43%), Gaps = 90/701 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
++ KRI +E + L + F P++ YI +Y+ VPP C+ P ++ +T D++I +
Sbjct: 223 DLFKRISDEDCELLGLRPEFGRPEE-YIWQYICVPPVCIR-PSVAQDGATNEDDVTIKLT 280
Query: 177 KKV----LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ + L ++ +++ + T + Q+ E LQL V Y+ E+ G +R
Sbjct: 281 EIIFTNSLLKLGLVKGGKGTTTSQLVQQWEF--LQLTVALYINSELPGVPTQPGQKPSR- 337
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G Q K + R K FS R+VI D +++E+ VP +A+ +T+ ER
Sbjct: 338 GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKILTYPER 393
Query: 291 VNVHNINYLQELVDNKLCLT-----YSDGSSSY-------SLREGSKGHTFLRPGQVVHR 338
V HNI L++ V N + DG + + +RE LR G +V R
Sbjct: 394 VFEHNIEQLRQAVRNGTDVHPGANYLMDGKTGFKRFLKFPGMREELAQK--LRVGDIVER 451
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
I DGD V NR P+ HK S+ + + T ++N C P +ADFDGD +++ PQ+
Sbjct: 452 HIRDGDIVLFNRQPSLHKLSIMSHRAKIRPWRTFRLNECACNPYNADFDGDEMNMHVPQT 511
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQLAMFA 456
A+ E L V+ L++ NG + D + + ++ K+ F D+A F Q + FA
Sbjct: 512 EEARTEATILMGVKHNLVTPRNGEPIIAAIQDFITASYLISKRDRFFDRAQFAQVCSYFA 571
Query: 457 LSPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C------------ 491
+ L P PA+ K WT Q++ ++ P S C
Sbjct: 572 DADLQIDIPPPAIMKP--VRLWTGKQVMSCLIRPNRKSPHLINLEAQCRTFEKPKGGHPK 629
Query: 492 ----GDRYL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
D +L I SEV+ G FD+ T+ N + + + GP+ + + L
Sbjct: 630 DMSPNDGWLVIVNSEVMCGVFDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCAR 689
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-------------QNELVD 592
L GFS+ + D N +++A Y+ + Q + ++
Sbjct: 690 WLANQGFSLGINDVIPGPNLRKNKDAKVEAAYAECLDLIEKAKHGKLENLPGCDQEQTLE 749
Query: 593 LQIENHIRHVKMLVAKFILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKF 648
I + V+ V + + S L+ + S S SK V Q +G Q+ G
Sbjct: 750 NMISGVLSGVRSDVGEICMTELSRHNAPLVMAVSGSKGSKINVAQMVACVGQQII-AGSR 808
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ HF P P +K G ++ FF GL P E + H+IS RE +V ++
Sbjct: 809 VPNGFQDRSLPHF----PKKSKDPPSK-GFVRNSFFSGLTPTEFLFHAISGREGLVDTAV 863
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + LM L D+ YD +VRN ++QF Y
Sbjct: 864 KTAETGYMQRRLMKALEDLSTHYDLSVRNSVG-GVVQFIYG 903
>gi|341858958|gb|AEK97389.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELIYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 191/770 (24%), Positives = 324/770 (42%), Gaps = 90/770 (11%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELV---------------DN--KLCLTYSDGSSSYSLREGSK 325
+TF E V NI+ LQELV DN ++ L + S L+ G K
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
P QV R + DGD V NR PT HK S+ V + T ++N + P +AD
Sbjct: 446 AF----PPQV-ERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNAD 500
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQSL +AE+ EL V + +++ + + + D L +++ K+ FL
Sbjct: 501 FDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 560
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC---------- 491
++ L MF + +P+PA+ K R WT QI S++ PG +C
Sbjct: 561 ERGEVMNLLMFLSTWDGKVPQPAVLKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDD 617
Query: 492 -----------GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSL 539
GD + +++ E++ G + ++ + +V + E G + F+ ++
Sbjct: 618 EDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNI 677
Query: 540 QPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENH 598
Q ++ L +G ++ + D +IQ I +A ++ N ++ N
Sbjct: 678 QTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNT 737
Query: 599 IRHVKMLVAKFIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTL 653
+R IL K+ + S+ ++ S VV A + +S +
Sbjct: 738 LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQN 797
Query: 654 VEDIASHF---ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
VE F R P + +Y G ++ + GL P E H++ RE ++ ++
Sbjct: 798 VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV 857
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
+E G + + L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 858 KTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 906
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|341858880|gb|AEK97350.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858882|gb|AEK97351.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858886|gb|AEK97353.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858888|gb|AEK97354.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858890|gb|AEK97355.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858892|gb|AEK97356.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858894|gb|AEK97357.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858896|gb|AEK97358.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858898|gb|AEK97359.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858900|gb|AEK97360.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858902|gb|AEK97361.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858904|gb|AEK97362.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858906|gb|AEK97363.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858908|gb|AEK97364.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858910|gb|AEK97365.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858912|gb|AEK97366.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858914|gb|AEK97367.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858916|gb|AEK97368.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858918|gb|AEK97369.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858920|gb|AEK97370.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858922|gb|AEK97371.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858924|gb|AEK97372.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858926|gb|AEK97373.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858930|gb|AEK97375.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858932|gb|AEK97376.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858942|gb|AEK97381.1| ribosomal polymerase II largest subunit [Beauveria australis]
gi|341858944|gb|AEK97382.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
Length = 1007
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 245/554 (44%), Gaps = 64/554 (11%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V N++ L+ LV N
Sbjct: 267 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEVVTPFNVDKLKRLVAN 326
Query: 306 KLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D + LR + L+ G V R I GD + NR P+
Sbjct: 327 GPTEHPGARFVVRDDGTRIDLRHHKRTSELTLQFGWKVERHISHGDIILFNRQPSLXXXX 386
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
V V T ++N + P +ADFDGD ++L PQS A+AE+ L V ++S
Sbjct: 387 XXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELANLCMVPLNIVSP 446
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL + ++ +P+PA+ K R RW
Sbjct: 447 QRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNTMLWVPDWDGVIPQPAVLKPR--PRW 504
Query: 475 TALQILQSVLPPGFD------SCGDRY-----------LIKKSEVLKGDFDRDTIPSVIN 517
T Q++ VLPP + G+ Y + + E++ G F++ ++ +
Sbjct: 505 TGKQVISMVLPPNLNLVRIDKDSGEEYERFSPLADGGLFVDRGELMFGLFNKKSVGTSAG 564
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
I+ ++F E GPE + FF+ Q ++ L GFS+ + D A + +I++++
Sbjct: 565 GIIHTVFNEFGPETAMAFFNGAQTVVNYWLLHYGFSIGIGDTVPDNATVESIKEQVNQRK 624
Query: 578 SLLYH-RMSTQNELVDLQIENHIRHV-KMLVAKFI------LKSSTLGYLID-------- 621
S + QN+ ++ Q ++R + VAK + +T L D
Sbjct: 625 SEVESITQKAQNQELEAQPGMNVRETFESKVAKALNDARDGAGGATESSLKDLNNAIQMA 684
Query: 622 -SKSDSAVSKVVQQAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAK 675
+ S + + Q +G Q S GK F +TL HF + +Y
Sbjct: 685 RAGSKGSTINIAQMTAIVG-QQSVEGKRIPFGFKYRTL-----PHFAKD-----DYSAQS 733
Query: 676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTV 735
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L + + YD TV
Sbjct: 734 RGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEETTVRYDNTV 793
Query: 736 RNVCSNSIIQFDYA 749
R+ N ++QF Y
Sbjct: 794 RDARGN-VVQFIYG 806
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 138/556 (24%), Positives = 241/556 (43%), Gaps = 64/556 (11%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV N
Sbjct: 343 RIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-N 401
Query: 306 KLCLTYSDGSSSYSLREGSK----------GHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ Y + Y +RE L+PG V R + DGD + NR PT H
Sbjct: 402 RGDTQYP--GAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 459
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ V + T ++N + P +ADFDGD ++L PQSL +AE+ E+ V +QL
Sbjct: 460 KMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQL 519
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCS 471
++ + + D L ++++M K+ F+D F L M+ + +P+PA+ K +
Sbjct: 520 ITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK-- 577
Query: 472 ARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRD 510
WT Q+ ++P + S GD + +I+ E+L G
Sbjct: 578 PLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSK 637
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
T+ ++ + E G E F+ +Q ++ L +G ++ + D +A +IQ
Sbjct: 638 TVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQ 697
Query: 571 KEIQALYSLLYHRM---------STQNELVDLQIENHIRHV--------KMLVAKFILKS 613
I+ + + T + EN + + K + +
Sbjct: 698 NTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEF 757
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPT 673
+ ++ S S + + Q +G Q + GK HF + +Y
Sbjct: 758 NNFKSMVVSGSKGSKINISQVIACVG-QQNVEGKRIPFGFRHRTLPHF-----IKDDYGP 811
Query: 674 AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 733
G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YDG
Sbjct: 812 ESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDG 871
Query: 734 TVRNVCSNSIIQFDYA 749
TVRN + ++Q Y
Sbjct: 872 TVRNSLAQ-MVQLRYG 886
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 176/745 (23%), Positives = 303/745 (40%), Gaps = 89/745 (11%)
Query: 66 GKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIP 125
GK GH G Y P +I L + A + D ++++ + V E+ K I
Sbjct: 169 GKKVGHGGCGR-----YQP-NIRRSGLDLTAEWKHVNEDSQEKKIVLTAQRVWEIFKHIT 222
Query: 126 EETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVE 184
+E L F + D IL LPVPP + + G + DL+ + + E
Sbjct: 223 DEECFILGMDPKFARPDWMILTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNE 282
Query: 185 IIRSSRSGTP-----------NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
++ + ++G F + ND+ G ++ + K + + AR
Sbjct: 283 LVHNEQAGAAAHVLAENIKLLQFHVATLIDNDMP---GLPRAMQKSGKPLKAIKARL--- 336
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
K ++R + K FS+R+VIT D R++++GVP IAQ +TF E V
Sbjct: 337 -------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTP 389
Query: 294 HNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTV 346
N+ +QELV D LR K L+ G V R + DGD V
Sbjct: 390 FNLEKMQELVQRGNSQYPGAKYIVRDNGDRIDLRYHPKTSDLHLQCGYKVERHVGDGDLV 449
Query: 347 FINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV
Sbjct: 450 IFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVE 509
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPR 462
+ +Q+++ + + D L +++ M K+ FL+K L MF +P+
Sbjct: 510 NIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQ 569
Query: 463 PALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSE 501
PA+ K + WT Q+ ++P + S GD + +++ E
Sbjct: 570 PAILKPK--PLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGE 627
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
++ G + T+ + ++ + E G E +F+ ++Q ++ L +G S+ + D
Sbjct: 628 LIMGILCKKTLGTSAGSLLHICYLELGHELCGQFYGNIQTVVNNWLLYEGHSIGIGDTIA 687
Query: 562 SKAALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV--------KM 604
IQ+ I+ + H M T + EN + +
Sbjct: 688 DPQTYLEIQRAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGG 747
Query: 605 LVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERI 664
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 748 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF--- 803
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 804 --IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 861
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYA 749
V++ YD TVRN +IQ Y
Sbjct: 862 ESVMVHYDSTVRNSVG-QLIQLRYG 885
>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
Length = 1459
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 179/684 (26%), Positives = 300/684 (43%), Gaps = 99/684 (14%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSSASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL+V Y+ + G+ ++ R G Q K + R
Sbjct: 314 EHWDYLQLSVAMYINSDSVNLLVMPGSNGGTKAKPIR-GFCQ----RLKGKQGRFRGNLS 368
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +T+ E+V +N LQ+LV N
Sbjct: 369 GKRVDFSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNKTKLQKLVMNGPNVHPG 428
Query: 306 KLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L S+ + +LR G++ LR G +V R + DGD V NR P+ H+ S+ +
Sbjct: 429 ANYLLKSNEEARRNLRYGNRDKLAKQLRIGDIVERHLEDGDIVLFNRQPSLHRLSILSHF 488
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLF-YPQSLAAKAEVLELFSVEKQLLSSHNGN 422
+ T ++N +C P +ADFDGD ++L Y Q+ A+AE + L V+ LL+ +G
Sbjct: 489 AKIRPWRTFRLNECVCTPYNADFDGDEMNLLCYQQTEEARAEAINLMGVKNNLLTPKSGE 548
Query: 423 LNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTA 476
+ D + S + K F D+A TQ L+M + + L P PA+ K +C WT
Sbjct: 549 PIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMSDANLKFDIPPPAIFKPQC--LWTG 606
Query: 477 LQILQSVLPPGFDSC--------------------------GDRY-LIKKSEVLKGDFDR 509
QI ++ P +S D Y +I+ SE+L G D+
Sbjct: 607 KQIFSLLIKPNKESPVVINLDAKNKVYIPPQNKSWPSEMSPNDGYVIIRGSEILSGVMDK 666
Query: 510 DTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSL------EDFSLS 562
+ + + +I + GP+E + + L L GFS+ + E+ L
Sbjct: 667 SVLGDGKKHSVFYTILRDYGPQESANAMNRMAKLCARYLGNRGFSIGISDVTPGEELKLK 726
Query: 563 KAALWNIQKEIQALYSLLYHR--MSTQ-----NELVDLQIENHIRHVKMLVAKFILKS-- 613
K L I + + Y++ + TQ + ++ +I + V+ V +
Sbjct: 727 KEDLVEIAYKKCDELIIQYNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELD 786
Query: 614 --------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+T G + + S + VV Q G ++ D F ++L HFE+
Sbjct: 787 NLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHFEK-- 837
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 838 --NSKTPQSK-GFVRNSFFTGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 894
Query: 726 DVVICYDGTVRNVCSNSIIQFDYA 749
D+ YD T+R SN I+QF Y
Sbjct: 895 DLSCQYDNTIR-TSSNGIVQFTYG 917
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAVLKPR--PLWTGKQIF-SLIVPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGILSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 151/550 (27%), Positives = 246/550 (44%), Gaps = 60/550 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGDA ++E+GVP IA+ +TF E V +NI L V N
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTFPETVTPYNIEKLTGYVKN 406
Query: 306 -------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ SDG+ G L G V R ++DGD + NR P+ HK S
Sbjct: 407 GPNEHPGAKYVIRSDGTRIDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLHKES 466
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S
Sbjct: 467 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 526
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + D L + K+ + FL K + M+ +P PA+ K R RW
Sbjct: 527 QRNGPLMGIVQDTLAGVYKLTRRDTFLTKEQVMDVMMWVPDWDGVIPLPAIWKPR--PRW 584
Query: 475 TALQILQSVLPP------GFDS-------CGDRYLIKKSEVLKGDFDRDTIPSVINEIVT 521
T QI+ V+P G D + LI++ +++ G + ++ + I+
Sbjct: 585 TGKQIISMVIPSIINLAMGADGEERDAPLKDEGLLIQQGQLIYGLLTKKSVGAAGGGIIH 644
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY 581
+ E GP ++F + Q ++ L G S+ + D + I+K I +++
Sbjct: 645 LCYNELGPSGAMDFLNGCQRVVNYWLLHCGHSIGIGDTIPDDKTIELIEKHINDEKAVVA 704
Query: 582 H--RMSTQNELVDL-------QIENHIRHVKMLVAKFILKSSTLGYLID---------SK 623
+M+T+N+L L EN + + A+ +ST L D S
Sbjct: 705 KLTKMATENQLEALPGMNVRETFENKV-SAALNTARDKAGTSTEKSLKDLNNAVTMARSG 763
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLI 679
S + + Q +G Q+ + + F +TL HF + D P A+ G +
Sbjct: 764 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL-----PHFTK----DDYSPEAR-GFV 813
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ + GL P E H+++ RE ++ ++ +E G + + L+ L D YDGTVRN
Sbjct: 814 ENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSL 873
Query: 740 SNSIIQFDYA 749
+ IIQF Y
Sbjct: 874 GD-IIQFVYG 882
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 17 IRFGLATQKEICTASISDC----------SISHASQLANPFLGLPLEFGKCESCGTSEPG 66
I+FGL + EI S++ + L +P LG KC++C T
Sbjct: 19 IQFGLLSPDEIKAMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTC-TENMS 77
Query: 67 KCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P+YHP I K
Sbjct: 78 ECPGHFGHIELARPVYHPGFIKRTK 102
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|397135814|gb|AFO11402.1| RNA polymerase I, partial [Ambrosiozyma monospora]
Length = 870
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 154/629 (24%), Positives = 280/629 (44%), Gaps = 71/629 (11%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANINVQKMEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI L ELV N D LR + G L+ G V
Sbjct: 186 TLSYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ ++ +V Q++S + + + D L + M + F++ + Q + +
Sbjct: 306 QSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGARKMTLRDIFIE--YDQVMNIC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPGF-------------DSCGDRYLI 497
P +P+P + K + W+ Q++ +P G DS L+
Sbjct: 364 FWIPNWDGVVPQPCIMKPK--PLWSGKQMMSLCIPKGIFLQRLDGPLICPKDSG---MLV 418
Query: 498 KKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
E++ G ++ TI + ++ + EKGP+ + F ++Q ++ L +GFS+ +
Sbjct: 419 VNGEIMFGVVNKATIGASAGGLIHTTMREKGPQVCAQLFGNIQKVVNFWLLHNGFSIGIG 478
Query: 558 DFSLSKAALWNIQKEIQALYSLLYHR-MSTQNELVDLQ---------------IENHIRH 601
D + NI + I + M QN ++ + I N R
Sbjct: 479 DAIADPDTMKNITETIATAKDKVQGVIMDAQNNRLEAEPGMTVRESFEQKVSNILNKARD 538
Query: 602 VKMLVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
V A+ LK S+ + ++ + S + + Q + +G Q+ + GK + + H
Sbjct: 539 VAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRINFGFADRSLPH 597
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F + +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 598 FTKD-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 652
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L D+++ YDGT RN + IIQF Y
Sbjct: 653 LKALEDIMVHYDGTTRNSLGD-IIQFLYG 680
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
Length = 1400
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 185/701 (26%), Positives = 302/701 (43%), Gaps = 90/701 (12%)
Query: 119 EMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
++ KRI +E + L + F P++ YI +Y+ VPP C+ P ++ +T D++I +
Sbjct: 223 DLFKRISDEDCELLGLRPEFGRPEE-YIWQYICVPPVCIR-PSVAQDGATNEDDVTIKLT 280
Query: 177 KKV----LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARF 230
+ + L ++ +++ + T + Q+ E LQL V Y+ E+ G +R
Sbjct: 281 EIIFTNSLLKLGLVKGGKGTTTSQLVQQWEF--LQLTVALYINSELPGVPTQPGQKPSR- 337
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
G Q K + R K FS R+VI D +++E+ VP +A+ +T+ ER
Sbjct: 338 GFCQ----RLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKILTYPER 393
Query: 291 VNVHNINYLQELVDNKLCLT-----YSDGSSSY-------SLREGSKGHTFLRPGQVVHR 338
V HNI L++ V N + DG + + +RE LR G VV R
Sbjct: 394 VFEHNIEQLRQAVRNGTDVHPGANYLMDGKTGFKRFLKFPGMREELAQK--LRVGDVVER 451
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
I DGD V NR P+ HK S+ + V V T ++N C P +ADFDGD +++ PQ+
Sbjct: 452 HIRDGDIVLFNRQPSLHKLSIMSHRVKVRPWRTFRLNECACNPYNADFDGDEMNMHVPQT 511
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQLAMFA 456
A+ E L V+ L++ NG + D + + ++ K+ F D+A F+Q + FA
Sbjct: 512 EEARTEATILMGVKHNLVTPRNGEPIVAAIQDFITASYLISKRDRFFDRAQFSQICSYFA 571
Query: 457 LSPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C------------ 491
+ L P PA+ K WT Q++ ++ P S C
Sbjct: 572 DANLHIDIPPPAIMKP--VRLWTGKQVMSCLIRPNSKSPHIVNLEAQCRTFEKPTGGHPK 629
Query: 492 ----GDRYL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
D +L I SEV+ G FD+ T+ N + + + GP+ + + L
Sbjct: 630 DMSPNDGWLVIVNSEVMCGVFDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCAR 689
Query: 546 NLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST-------------QNELVD 592
L GFS+ + D N +++A Y+ + Q + ++
Sbjct: 690 WLANQGFSLGINDVIPGPNLRKNKDAKVEAAYAECLDLIEKAKRGKLENLPGCDQEQTLE 749
Query: 593 LQIENHIRHVKMLVAKFILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKF 648
I + V+ V + + S L+ + S SK V Q +G Q+ G
Sbjct: 750 NMISGVLSGVRSDVGEICMTELSRHNAPLVMAFCGSKGSKINVAQMVACVGQQII-AGSR 808
Query: 649 YSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSR 708
+ HF P P +K G ++ FF GL P E + H IS RE +V ++
Sbjct: 809 VPNGFQDRSLPHF----PKKSKDPLSK-GFVRNSFFSGLTPTEFLFHGISGREGLVDTAV 863
Query: 709 GLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + LM L D+ YD +VRN ++QF Y
Sbjct: 864 KTAETGYMQRRLMKALEDLSTHYDLSVRNSVG-GVVQFIYG 903
>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
Length = 1547
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 185/686 (26%), Positives = 291/686 (42%), Gaps = 89/686 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G ++ +Y+P PP C+ P ++ ++ D++ + + +L + S +
Sbjct: 254 GLDPAEGRPEMFLWQYVPAPPICIR-PSVAQENASNEDDITSKLSEIILYAGHLRESMKK 312
Query: 192 GT--PNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKM 247
G P Q LQL VG Y+ +V G + R G Q K +
Sbjct: 313 GVALPVIMEQ---WEFLQLQVGMYVNSDVPGLYQPGFGKPIR-GFCQ----RLKGKQGRF 364
Query: 248 RTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-- 305
R K FS R+VI+ D + ++ VP +A+ +T+ ERVN NI L+E V N
Sbjct: 365 RGNLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGP 424
Query: 306 -----KLCLTYSDGSSSYSLREGS-----KGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 355
+ DGS Y+L+ G + L G VV R + D D V NR P+ H
Sbjct: 425 HIWPGAQGIIKKDGSK-YNLKIGKESLRERHADNLEFGDVVERHLEDDDIVLFNRQPSLH 483
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + V V T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ L
Sbjct: 484 KLSIMSHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNL 543
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAF-----TQQLAMFALSPLPRPALSKAR 469
++ NG + D + + ++ K F D+ TQ L LP PA+ K R
Sbjct: 544 ITPKNGEPIIAATQDFITAAFLLSSKDRFFDRTTFTYICTQMLLGDTYLELPPPAIIKPR 603
Query: 470 CSARWTALQILQSVLPPGFDS-------------------------CGDRYL-IKKSEVL 503
A WT QI ++ P +S D +L ++ SEV+
Sbjct: 604 --ALWTGKQIFNVMMRPNKESPVLVNLDAKNKAFQKKQDGEIPDMDIDDAFLVVRNSEVM 661
Query: 504 KGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLS 562
G D+ T+ N + I + GPE + L L L GFS+ + D S
Sbjct: 662 CGRMDKSTVGGGKKNSVFYVILRDFGPEYAAAAMNRLAKLSARTLTLRGFSIGVGDVWPS 721
Query: 563 KAALWNIQKEIQALYSLLYHRMST--QNEL-------VDLQIENHI----RHVKMLVAKF 609
+ + ++ Y + T Q +L ++ +EN I V+ +
Sbjct: 722 DSLTAHKASLVEDAYKKCDDLIETYRQGKLEKAPGCNLEETLENIISGILSKVRQQAGNY 781
Query: 610 ILK--SSTLGYLIDSKSDSAVSK--VVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 665
+ S LI +KS S S+ V Q +G Q+ GK + HF +
Sbjct: 782 CVDNLSKNNAPLIMAKSGSKGSEINVAQMVACVGQQIIS-GKRVPDGFQDRSLPHFHK-- 838
Query: 666 PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 725
+ P +K G ++ F+ GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 839 --NARQPPSK-GFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 895
Query: 726 DVVICYDGTVRNVCSNSIIQFDYAVN 751
D+ YD TVR I+QF Y +
Sbjct: 896 DLSAQYDDTVR-TSEGGIVQFQYGAD 920
>gi|341859010|gb|AEK97415.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
gi|341859012|gb|AEK97416.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 137/551 (24%), Positives = 240/551 (43%), Gaps = 58/551 (10%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV+
Sbjct: 343 RIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNR 402
Query: 306 KLCLTYSDGSSSYSLREGSKGHT-----FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ 360
T G+ R + H L+PG V R + DGD + NR PT HK S+
Sbjct: 403 GD--TQYPGAKENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMM 460
Query: 361 ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
V + T ++N + P +ADFDGD ++L PQSL +AE+ E+ V +QL++
Sbjct: 461 GHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQA 520
Query: 421 GNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTA 476
+ + D L ++++M K+ F+D F L M+ + +P+PA+ K + WT
Sbjct: 521 NKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTG 578
Query: 477 LQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSV 515
Q+ ++P + S GD + +I+ E+L G T+
Sbjct: 579 KQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKS 638
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
++ + E G E F+ +Q ++ L +G ++ + D +A +IQ I+
Sbjct: 639 AGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRK 698
Query: 576 LYSLLYHRM---------STQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGY 618
+ + T + EN + + K + + +
Sbjct: 699 AKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKS 758
Query: 619 LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
++ S S + + Q +G Q + GK HF + +Y G
Sbjct: 759 MVVSGSKGSKINISQVIACVG-QQNVEGKRIPFGFRHRTLPHF-----IKDDYGPESKGF 812
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 813 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 872
Query: 739 CSNSIIQFDYA 749
+ ++Q Y
Sbjct: 873 LAQ-MVQLRYG 882
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 181/743 (24%), Positives = 311/743 (41%), Gaps = 81/743 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 166 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 219
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 220 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 279
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 280 NELRKNEGSGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 331
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 391
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 392 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 451
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 452 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 511
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 512 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 571
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ +++
Sbjct: 572 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIM 629
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D +++
Sbjct: 630 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGD-TIADP 688
Query: 565 ALWN-----IQKEIQALYSLLY--HRM---STQNELVDLQIENHIRHV--------KMLV 606
+N I+K + +++ H M T + EN + +
Sbjct: 689 QTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSA 748
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 749 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF----- 802
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN +IQ Y
Sbjct: 863 VMVNYDGTVRNSVGQ-LIQLRYG 884
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGL 50
M T S Q+ ++FG+ + EI S+++ + A L +P G+
Sbjct: 1 MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGV 60
Query: 51 PLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
+C++C + +C GHFG+I+L P++H I++
Sbjct: 61 IDRTSRCQTCAGNM-TECPGHFGHIDLAKPVFHIGFITK 98
>gi|341858884|gb|AEK97352.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
Length = 954
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSMGD-VIQFLYG 786
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 130 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 183
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 184 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 243
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 244 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 299
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 300 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 353 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 412
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 413 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 472
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 473 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 532
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 533 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 589
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 590 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 649
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 650 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 709
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 710 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 769
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 770 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 829
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 830 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 868
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 181/743 (24%), Positives = 311/743 (41%), Gaps = 81/743 (10%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A + D ++++ S V E+LK
Sbjct: 166 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKH 219
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 220 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKAN 279
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNSTT 240
E+ ++ SG QE LQ V ++ + G ++ + S P
Sbjct: 280 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVDNDMPGMPRAMQK-------SGKPLKAI 331
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
KA L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 332 KARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNI 391
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D V N
Sbjct: 392 DRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFN 451
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 452 RQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 511
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPAL 465
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P +
Sbjct: 512 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCI 571
Query: 466 SKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKKSEVLK 504
K R WT QI ++P + S GD + +++ +++
Sbjct: 572 LKPR--PLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIM 629
Query: 505 GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKA 564
G + T+ + ++ F E G + F+ ++Q ++ L +G S+ + D +++
Sbjct: 630 GILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGD-TIADP 688
Query: 565 ALWN-----IQKEIQALYSLLY--HRM---STQNELVDLQIENHIRHV--------KMLV 606
+N I+K + +++ H M T + EN + +
Sbjct: 689 QTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSA 748
Query: 607 AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 749 KKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPYGFRKRTLPHF----- 802
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 803 IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 862
Query: 727 VVICYDGTVRNVCSNSIIQFDYA 749
V++ YDGTVRN +IQ Y
Sbjct: 863 VMVNYDGTVRNSVGQ-LIQLRYG 884
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL----------ANPFLGL 50
M T S Q+ ++FG+ + EI S+++ + A L +P G+
Sbjct: 1 MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGV 60
Query: 51 PLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
+C++C + +C GHFG+I+L P++H I++
Sbjct: 61 IDRTSRCQTCAGNM-TECPGHFGHIDLAKPVFHIGFITK 98
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
Length = 871
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 150/588 (25%), Positives = 263/588 (44%), Gaps = 68/588 (11%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V +NI+ L E V N
Sbjct: 148 RVRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTEYVRN 207
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R ++D D V NR P+ HK S
Sbjct: 208 GPNEHPGAKYVIRDTGDRIDLRYHKRAGDIQLQYGWKVERHLIDEDPVLFNRQPSLHKMS 267
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ A V V T +IN + P +ADFDGD ++L PQS ++E+ L +V Q++S
Sbjct: 268 MMAHRVKVMPFSTFRINLSVTSPYNADFDGDEMNLHVPQSHETRSELKNLAAVPLQIISP 327
Query: 419 HNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D L ++ M K F++ + + +P+P + K + W
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLKDIFIEYDQVMNICYWIKDWNGIVPQPTILKPK--PLW 385
Query: 475 TALQILQSVLPPGFDSC------------GDRYLIKKSEVLKGDFDRDTIPSVINEIVTS 522
T Q+L +P G + D LI E++ G ++ T+ S ++ +
Sbjct: 386 TGKQVLSMGIPEGINLIRFEEKTTYLSPQDDGMLIVNGEIMFGVVNKKTVGSSAGGLIHT 445
Query: 523 IFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI--------QKEIQ 574
+F EKG + + F ++Q ++ L +GFS+ + D K + I QK +
Sbjct: 446 VFREKGHKVCAQLFGNIQKIVNYWLLHNGFSIGIGDTIADKTTMTRITTTINEAKQKVQE 505
Query: 575 ALYSLLYHRMS-----TQNELVDLQIENHIRHVKMLVAKFILK----SSTLGYLIDSKSD 625
+ +R+ T E + + + + V K+ K S+ + ++ S S
Sbjct: 506 VILDAHANRLQPEPGMTLREAFEANVAQLLNKARDDVGKYSEKSLKDSNNVKQMVISGSK 565
Query: 626 SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
+ + Q + +G Q+ + GK + HF + D P +K G I+ +
Sbjct: 566 GSFINISQMSACVGQQMVE-GKRIPFGFADRTLPHFTK----DDFSPESK-GFIENSYLR 619
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E H+++ RE ++ ++ +E G + + L+ L D+ + YDGTVRN + +++Q
Sbjct: 620 GLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDITVHYDGTVRN-STGTVLQ 678
Query: 746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWE 793
F Y + G+ S P LDS P+S ++E
Sbjct: 679 FIYGED--------------GLDGTQVESQP-----LDSLPASEETFE 707
>gi|310831358|ref|YP_003970001.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386542|gb|ADO67402.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 1493
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 166/663 (25%), Positives = 285/663 (42%), Gaps = 76/663 (11%)
Query: 139 PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
P+D +IL+ PVPP + D ++ + + S+ LK ++I +S
Sbjct: 230 PKD-FILKNFPVPPVIIRPTSKIDMMTASTQEDSLT-----LKIADVINNSNRLKKQLNK 283
Query: 199 QEVESNDLQLA-------VGQYLEVRGTAKSSRDVDARFGVSQDPNSTT----KAWLEKM 247
++ D+ A V L V +S + F P + K L ++
Sbjct: 284 DAIDREDISTAAYDSAANVQYNLAVYFDNESMNLPRSEFKTGGRPTKSISERLKGKLGRV 343
Query: 248 RTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-- 305
R + K + +RSVITGD ++EIG+P +A+ ITF E V NI+ L +LV N
Sbjct: 344 RNNLMGKRQDYCARSVITGDPDVNIDEIGIPLAVAKNITFPEIVTPQNIDELSKLVLNGN 403
Query: 306 -----------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
K + + LR K L G +VHR + DGD + NR P+
Sbjct: 404 KKYPGANFVVRKSMVNGKQITQKIDLRI-RKKTIKLEYGNIVHRHLQDGDPILFNRQPSL 462
Query: 355 HKHSLQALSVYVHDD---HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
HK S+ V V +T ++N P ADFDGD ++ F+PQS+ A+ E+ + +V
Sbjct: 463 HKPSMMGHKVQVAKTDGINTFRMNVSSTAPYGADFDGDEMNGFFPQSIQARTELELIANV 522
Query: 412 EKQLLSSHNGNLNLQLATDA-----LLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALS 466
+ Q++ + N N + D L+SL D + + A + LS + L
Sbjct: 523 KNQIVGAKNSNPIIGCVQDGVTGSYLISLD--------DVRLSGREAHWILSKAEKSDLY 574
Query: 467 KARCSARWTALQILQSVLPPGFDSC---GDRYL--IKKSEVLKGDFDRDTIPSVINEIVT 521
K + +T +I ++P G +S GD+Y +K ++L G D+ + N +
Sbjct: 575 KIDKNKTYTGKEIYSMIIPDGINSFKKKGDKYTFQVKDGKLLVGVLDKSQVADKANSLTH 634
Query: 522 SIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY 581
++ +KG E F D Q ++ L GF+V D + K + + + S+L
Sbjct: 635 FVYDKKGGEAARMFLDDTQRTVLNYLIYRGFTVGFGDCFIDKDTDKKLHDTV--IKSVLD 692
Query: 582 HR-----MSTQNELVDLQIENHIRHVKM---------LVAKFILKSSTLGYL-IDSKSDS 626
++ M Q +++ M +V K + K++ + + +K+
Sbjct: 693 NQFDITSMENQGNVINYDTYEESLQSAMTAVGGNTFGMVEKNLDKNNNFYIMSLGAKAKG 752
Query: 627 AVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHG 686
+ Q LG Q ++ GK K + SHF Y D + G + + G
Sbjct: 753 KGVNIGQIISCLGQQTTE-GKRVLKKVNGRTLSHFS--YNDDTAFAR---GFVGSSYLEG 806
Query: 687 LDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQF 746
+ +E HS+S RE ++ + S G + + L+ L D+ + YDGTVRN + ++I++
Sbjct: 807 MKGHEYFFHSVSGREGMITIALKTSSTGYIQRKLIKALEDLRVTYDGTVRN-SNGTLIEY 865
Query: 747 DYA 749
+Y
Sbjct: 866 NYG 868
>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
Length = 1460
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 176/699 (25%), Positives = 298/699 (42%), Gaps = 97/699 (13%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL V Y+ + G + V G Q K + R
Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN------- 305
K FS R+VI+ D ++E+ VP +A+ +TF E+V +N LQ+L+ N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIINGPNVHPG 429
Query: 306 KLCLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L + + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKKNEDARRNLRYGDRIKLAKNLQHGDVVERHLEDGDVVLFNRQPSLHRLSILSHF 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTAL 477
+ D + S + K F D+A TQ L+M + L P PA+ K WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFFDRATLTQLLSMMSNGTLRFDIPPPAIMKP--YYMWTGK 607
Query: 478 QIL--------------------QSVLPPGFD------SCGDRYL-IKKSEVLKGDFDRD 510
Q+ + +PP + S D Y+ I+ S +L G D+
Sbjct: 608 QVFSLLIRPNKESPVVINLDAKNKVFMPPKYKDYPNEMSRNDGYVVIRGSNILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + +
Sbjct: 668 VLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARYLGNRGFSIGISDVTPADDLKQKK 727
Query: 570 QKEIQALYSLL------YH--RMSTQ-----NELVDLQIENHIRHVKMLVAKFILKS--- 613
++ ++ Y+ +H ++ TQ + ++ +I + V+ V +
Sbjct: 728 EELVEIAYAKCDELIDQFHKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDN 787
Query: 614 -------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYP 666
+T G + + S + VV Q G ++ D F ++L HF++
Sbjct: 788 LNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHFQK--- 837
Query: 667 MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD 726
+ P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D
Sbjct: 838 -NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895
Query: 727 VVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
+ YD TVR SN I+QF Y + + +PV
Sbjct: 896 LSCQYDNTVR-TSSNGIVQFTYGGDGLDPMEMEGNAKPV 933
>gi|303276410|ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461851|gb|EEH59144.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1591
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 170/671 (25%), Positives = 281/671 (41%), Gaps = 99/671 (14%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
IL +LPVPP C+ DGV+ + D L ++++ ++R +
Sbjct: 266 ILTHLPVPPVCIRPSVEMDGVAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAIANLMENW 325
Query: 204 NDLQLAVGQY---------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
+ LQ+ + Y L+ +G K R R K + R K
Sbjct: 326 DFLQVQIAMYFNSELPGLSLQYQGPGKPLRGFVQRL----------KGKQGRFRGNLSGK 375
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL------- 307
FS R+VI+ D R++E+GVP IA+ +T+ E ++ HNI +++E V N +
Sbjct: 376 RVDFSGRTVISPDPNLRIDEVGVPMHIAKLMTYPEVISKHNIEHIRERVRNGMNKHPGAN 435
Query: 308 CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ + G + Y L+ G + L+ G VV R + DGD + NR P+ HK S+ A
Sbjct: 436 FVRFKSGGTQY-LKYGDRRRVASELKFGDVVERHLNDGDVLLFNRQPSLHKMSIMAHRAK 494
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T++ N +C P +ADFDGD +++ PQ+ A+AE +EL V K L + NG + +
Sbjct: 495 IMPWRTLRFNECVCAPYNADFDGDEMNIHCPQTEEARAEAIELMGVHKNLCTPKNGEILI 554
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALSPLPRPALSKARCSARWTAL------- 477
D L + ++ + FLD+A Q+ + L + AL S W+
Sbjct: 555 AATQDFLTASYLLTSRDSFLDRA---QVGL--LVAMMGDALMSGAYSLHWSPYDRVGVAS 609
Query: 478 -QILQS--VLPPGFDSCG------DRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-- 525
Q+ + V + G D Y+ ++ SE++ G + T+ T +F+
Sbjct: 610 DQVFVNLEVAEKSYGKVGKHMCPRDGYVCVQNSEIMCGQLGKATLGGGNK---TGLFYVL 666
Query: 526 --EKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHR 583
E GPE + + L L + GFSV ++D + K + Y+ R
Sbjct: 667 NSEYGPEVTASAMNRVAKLSARWLGSRGFSVGIDDVTPGARLSAEKAKVVSKGYADCDTR 726
Query: 584 MST-QNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSK------------------- 623
+ + + LQ + A+ L+S LG L + +
Sbjct: 727 IEAWKQGTLALQPGCN--------AEQTLESEVLGILSNVRETAGNACLEELPRINAPLI 778
Query: 624 -----SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
S + + Q +G Q G+ E HF R P AK G
Sbjct: 779 MALCGSKGSTINISQMVACVGQQAVG-GQRPPDGFAERSLPHFRR----GEKTPAAK-GF 832
Query: 679 IKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNV 738
+ FF G+ P E H+++ RE +V ++ +E G + + LM L D+ + YDGTVRN
Sbjct: 833 VANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVRN- 891
Query: 739 CSNSIIQFDYA 749
+ I+Q Y
Sbjct: 892 STGGIVQLTYG 902
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
Length = 870
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 153/635 (24%), Positives = 284/635 (44%), Gaps = 65/635 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVD 227
DL+ + + + + + G+P E E+ LQ V Y++ + G ++ +
Sbjct: 74 DLTYKLADILKANINVQKFEMDGSPQHVISEFEAL-LQYHVATYMDNDIAGQPQALQK-- 130
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VI+GD ++++GVP IA+
Sbjct: 131 -----SGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAK 185
Query: 284 RITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVV 336
+++ E V +NI L E+V N D LR + G L+ G V
Sbjct: 186 TLSYPEIVTPYNIQKLTEMVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKV 245
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R +MD D V NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 246 ERHLMDNDPVLFNRQPSLHKMSMMCHKVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVP 305
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMF 455
QS +AE+ +L +V Q++S + + + D L ++ M + FL+ + Q + +
Sbjct: 306 QSYETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLE--YDQVMNIC 363
Query: 456 ALSP-----LPRPALSKARCSARWTALQILQSVLPPG----------FDSCGDRYLIKKS 500
P +P+PA+ K + W+ Q+L +P G LI
Sbjct: 364 FWIPNWDGVVPQPAILKPK--PLWSGKQVLSLCIPKGIFLQRLDGSLLSPKDSGMLIVNG 421
Query: 501 EVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS 560
E++ G ++ T+ + ++ + EKGPE + F ++Q ++ L +GFS+ + D
Sbjct: 422 EIMFGVVNKATVGASAGGLIHTTMREKGPEVCAKMFGNIQKVVNFWLLHNGFSIGIGDAI 481
Query: 561 LSKAALWNI-------QKEIQALYSLLYHRM------STQNELVDLQIE---NHIRHVKM 604
+ I ++++Q + H + T E + ++ N R
Sbjct: 482 ADPETMKTITETIDVAKEKVQVVIRDAQHNLLEPEPGMTVRESFEQKVSKILNEARDAAG 541
Query: 605 LVAKFILK-SSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
A+ LK S+ + ++ + S + + Q + +G Q+ + GK + HF +
Sbjct: 542 KSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVE-GKRIHFGFSDRSLPHFTK 600
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 601 D-----DYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 655
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L D+++ YDGT RN + +IQF Y + + S+
Sbjct: 656 LEDIMVHYDGTTRNSLGD-VIQFIYGEDGLDATSV 689
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 168/708 (23%), Positives = 303/708 (42%), Gaps = 79/708 (11%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPD 159
+ D ++++ + V E+ K+I +E + F + +++ LPVPP +
Sbjct: 199 VNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAV 258
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
++ G + DL+ + + ++ R+ +G + V ++D++L QY
Sbjct: 259 VTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGA----AAHVLTDDVRLL--QYHVATLV 312
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ P + K L+ ++R + K FS+R+VIT D ++ +
Sbjct: 313 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 372
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK---------- 325
GVP IAQ +TF E V N++ LQELV N+ Y + Y +RE
Sbjct: 373 GVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--GAKYIIRENGARVDLRYHPRA 429
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L+PG V R + DGD + NR PT HK S+ V + T ++N + P +AD
Sbjct: 430 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 489
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFL 444
FDGD ++L PQSL +AE+ E+ V +QL++ + + D L ++++M K+ F+
Sbjct: 490 FDGDEMNLHLPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 549
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------------ 489
D +F L M+ + +P+PA+ K + WT Q+ ++P +
Sbjct: 550 DWSFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQLFSLIIPGNVNVLRTHSTHPDSE 607
Query: 490 --------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
S GD + LI+ E+L G T+ ++ + E G E F+ +Q
Sbjct: 608 DSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 667
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYH-------------- 582
++ L G ++ + D A +IQ I Q + ++
Sbjct: 668 TVINAWLLRVGHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKAHNDDLEPTPGNTL 727
Query: 583 RMSTQNELVDLQIENHIR-HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQ 641
R + +N++ QI N R K + + + ++ S S + + Q +G Q
Sbjct: 728 RQTFENKVN--QILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVG-Q 784
Query: 642 LSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTRE 701
+ GK HF + +Y G ++ + GL P E H++ RE
Sbjct: 785 QNVEGKRIPFGFRHRTLPHF-----IKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 839
Query: 702 VIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ + V++ YDGTVRN + ++Q Y
Sbjct: 840 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQ-MVQLRYG 886
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 168/661 (25%), Positives = 287/661 (43%), Gaps = 78/661 (11%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
I++ L VPP + DG+ DL+ ++ + + + G+P ++ES
Sbjct: 141 IIQVLLVPPLSVRPSVHMDGMGRSEDDLTHKLMDIIKANNNLRKHEADGSPPHLVTDLES 200
Query: 204 NDLQLAVGQYL--EVRG----TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
LQ V Y+ E+ G T KS R + + K ++R + K
Sbjct: 201 -ILQYHVATYMNNELSGVPTATQKSGRPI-------KSIRDRLKGKEGRLRGNLMGKRVD 252
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTY 311
FS+R+VITGD ++++GVP IA+ +TF E V N LQ+LV N
Sbjct: 253 FSARTVITGDPNISIDQVGVPRSIARNLTFPETVTAANQERLQQLVRNGPTEHPGARYII 312
Query: 312 SDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHT 371
+ LR ++ L+ G V R +MD D V NR P+ HK + V V T
Sbjct: 313 RENGDRIDLRYSNRSEVSLQVGYRVERHLMDDDFVIFNRQPSLHKMGMMGHRVKVMPFST 372
Query: 372 VKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDA 431
++N + P +ADFDGD ++L PQS +AE++EL V +Q++S + + D
Sbjct: 373 FRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEIMELCMVPRQIVSPQKNAPVMGIVQDT 432
Query: 432 LLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPP- 486
L ++ + ++ FL + + M+ + +P PA+ K WT Q + VLP
Sbjct: 433 LCGIRKLTRRDCFLTMDLMKNILMWVPNWDGVVPMPAILKP--VPLWTGKQAISLVLPKV 490
Query: 487 ---GFD-----------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 531
GF S GD R I++ E+L G + T+ S I+ + G E+
Sbjct: 491 NMIGFHSQHPDGEHTLVSPGDTRVQIEEGELLMGILCKQTVGSSSGGIIHIAMNDLGHEQ 550
Query: 532 VLEFFDSLQPLLMENLFADGFSVSLED------------FSLSKAALWNIQKEIQALYSL 579
FF+ Q ++ L +GFS+ + D ++ A L ++K I +
Sbjct: 551 CKMFFEGAQAVVNYWLLHNGFSIGIGDTITDATTMDHVNLTIESAKL-EVEKIIATAQAG 609
Query: 580 LYHR---MSTQ---NELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQ 633
R M+ + LV+ ++ + + + ++ + S + + Q
Sbjct: 610 TLQRKPGMTVRESFESLVNYELGRARERTGARSTNSLREQNNFKQMVVAGSKGSNINISQ 669
Query: 634 QAGFLGLQLSDRGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLD 688
+G Q + GK F +TL HF++ D + P ++ G ++ + GL
Sbjct: 670 IMACVG-QQNVEGKRIPFGFKGRTL-----PHFKK----DDHSPQSR-GFVENSYLRGLT 718
Query: 689 PYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
P E H++ RE ++ ++ +E G + + L+ L D+ + YD TVR+ N I+QF Y
Sbjct: 719 PQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLSVKYDSTVRDAVGN-IVQFVY 777
Query: 749 A 749
Sbjct: 778 G 778
>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Sarcophilus harrisii]
Length = 1390
Score = 163 bits (413), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 192/731 (26%), Positives = 307/731 (41%), Gaps = 116/731 (15%)
Query: 117 VKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V + KRIP E L AGK P D IL L VPP C+ +SD S + D
Sbjct: 223 VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSVVSDLKSGTNEDD 278
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ ++I+ R + + + LQL Y+ E+ G
Sbjct: 279 LTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP--------- 329
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P T+ ++++++ R K FS R+VI+ D R++E+ VP +A
Sbjct: 330 --LNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVA 387
Query: 283 QRITFEERVNVHNINYLQELVDNKLCLTYSDGSS-------------SYSLREGSKGHTF 329
+ +TF E+VN NIN++++LV N G++ Y RE K
Sbjct: 388 KILTFPEKVNKANINFMRKLVRNGP--EVHPGANFIQQRHMQMKRFLKYGNRE--KMAQE 443
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 389
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADFDGD
Sbjct: 444 LKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGD 503
Query: 390 CIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAF 448
++L PQ+ AKAE L L + L++ NG + D L ++ K F D+A
Sbjct: 504 EMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Query: 449 TQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPP-------------G 487
Q+ L LP PA+ K WT Q+ +L P G
Sbjct: 564 ACQIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSLILQPSDENPVRANLRTKG 621
Query: 488 FDSCG--------DRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFD 537
CG D Y+ I+ SE++ G D+ T+ S N I + + G E +
Sbjct: 622 KQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQIEAADAMS 681
Query: 538 SLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIEN 597
L L L GFS+ + D + + L +A Y LL +E ++
Sbjct: 682 RLARLAPVYLSNRGFSIGIGDVTPGQGLL-------KAKYELLTAGYKKCDEYIEALNTG 734
Query: 598 HIRHVKMLVAKFILKS---STLGYLIDSKSDSAVSKVVQQAGFLGLQL-SDRGKF----- 648
++ A+ L++ L + D ++ + ++ + L + L +G F
Sbjct: 735 KLQQQPGCTAEETLEALILKELSVIRDHAGNACLRELDKSNSPLTMALCGSKGSFINISQ 794
Query: 649 ---------YSKTLVED-----IASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMT 694
S + V D HFE+ + P AK G + F+ GL P E
Sbjct: 795 MIACVGQQAISGSRVPDGFENRSLPHFEKHSKL----PAAK-GFVANSFYSGLTPTEFFF 849
Query: 695 HSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARK 754
H+++ RE +V ++ +E G + + L+ L D+ YD TVR+ + IIQF Y +
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLD 908
Query: 755 SHSLFPAGEPV 765
++ EP+
Sbjct: 909 PAAMEGKDEPL 919
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 163 bits (413), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 317/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 162 KFGVEQPEGDEDITKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 215
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGYIL-EYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L F + +++ LPVPP + + G + DL
Sbjct: 216 SPERVHEIFKRISDEECFILGMDPKFARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDL 275
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 276 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 331
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 332 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 384
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 385 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 444
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 445 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 504
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 505 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 564
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 565 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 621
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 622 PGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLI 681
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 682 EGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 741
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 742 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 801
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 802 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 861
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 862 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 900
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 20 VQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 78
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 79 ECPGHFGHIELAKPVFH 95
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 175/710 (24%), Positives = 314/710 (44%), Gaps = 87/710 (12%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ----DGYILEYLPVPPNCLS 156
+++D V ++ + S V +LKRI ++ + + G P+ D ++ LPVPP +
Sbjct: 197 VQDDTVEKKSVLSAERVHSILKRIRDDDARAM---GLNPEWARPDWMVITVLPVPPPPVR 253
Query: 157 VPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL-- 214
+ D S DL+ + V E+ + ++G P E + LQ V Y+
Sbjct: 254 PSIMMDTASRGEDDLTHKLADIVKANRELRKQEKNGAPAHIITEA-TQFLQFHVATYVDN 312
Query: 215 EVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYK 270
E+ G ++ + S P + + L+ ++R + K FS+R+VIT D
Sbjct: 313 EIPGLPQAQQR-------SGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 365
Query: 271 RVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREG 323
++++GVP IA +T+ E V NI+ ++EL+ N + DG+ + LR
Sbjct: 366 SIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRNGPNEHPGAKYIIREDGTR-FDLRFV 424
Query: 324 SK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPL 382
K T L G V R I DGD V NR P+ HK S+ + V T ++N + P
Sbjct: 425 KKITDTHLECGYKVERHIQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPY 484
Query: 383 SADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKK 441
+ADFDGD ++L PQSL +AE++E+ V +Q++S + + + D LL S+K +
Sbjct: 485 NADFDGDEMNLHVPQSLETRAEIIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRD 544
Query: 442 YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPP-GFDSCGDRY-- 495
F+++ + M+ S +P PA+ K + WT Q+ ++P G +
Sbjct: 545 TFVERDLMMNILMWLPSWDGKIPPPAIWKPK--KLWTGKQLFSLIIPNINLQRFGSTHSD 602
Query: 496 --------------LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
+I + E+L G + ++ + I+ + E G + F D Q
Sbjct: 603 KEKEKSEMAADTVVIIDQGELLTGILCKRSLGAANGSIIHVVMNEHGHDSCRLFIDQTQT 662
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEI----QALYSLLYHRMSTQNELVDLQ--I 595
++ L GF+V + D A + + I + L+ S Q E + +
Sbjct: 663 VVNHWLINHGFTVGIGDTIADAATMSKVTSAIANAKTQVKELIIKAQSNQFECQPGRSML 722
Query: 596 ENHIRHVKMLV-----------AKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSD 644
E+ + V ++ + + +S+ + ++++ S + + Q +G Q +
Sbjct: 723 ESFEKEVNRVLNTARDDAGTSAQRSLQESNNVKAMVNAGSKGSFINISQMMACVG-QQNV 781
Query: 645 RGK-----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
GK F ++TL HF + +Y G ++ + GL P E H++
Sbjct: 782 EGKRVPFGFQNRTL-----PHFTKD-----DYGPESRGFVENSYLRGLTPQEFFFHAMGG 831
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ SE G + + L+ + DV + YD TVRN + +IQF Y
Sbjct: 832 REGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDATVRNSLGD-VIQFAYG 880
>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
troglodytes]
Length = 1380
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 196/729 (26%), Positives = 304/729 (41%), Gaps = 112/729 (15%)
Query: 117 VKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
V +L IP E L AGK P D IL L VPP C+ +SD S + D
Sbjct: 213 VLNLLNEIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSVVSDLKSGTNEDD 268
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDAR 229
L +++ ++I+ R + + + LQL Y+ E+ G
Sbjct: 269 LTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP--------- 319
Query: 230 FGVSQDPNSTTKAWLEKMRTLFIR-------KGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
++ P T+ ++++++ R K FS R+VI+ D R++E+ VP +A
Sbjct: 320 --LNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVA 377
Query: 283 QRITFEERVNVHNINYLQELVDNKLCL-----------TYSDGSSSYSLREGSKGHTFLR 331
+ +TF E+VN NIN+L++LV N + T Y RE K L+
Sbjct: 378 KILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNRE--KIAQELK 435
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADFDGD +
Sbjct: 436 YGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEM 495
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQ 450
+L PQ+ AKAE L L + L++ NG + D L ++ K F D+A
Sbjct: 496 NLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKAC 555
Query: 451 QLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS------------ 490
Q+ L LP P + K WT QI +L P D+
Sbjct: 556 QIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDNPVRANLRTKGKQ 613
Query: 491 -CG--------DRYL-IKKSEVLKGDFDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSL 539
CG D Y+ I+ SE++ G D+ T+ S N I + + G E + L
Sbjct: 614 YCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRL 673
Query: 540 QPLLMENLFADGFSVSLED-----------FSLSKAALWNIQKEIQALYS--LLYHRMST 586
L L GFS+ + D + L A + I+AL + L T
Sbjct: 674 ARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCT 733
Query: 587 QNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSKSD----SAVSKVVQQAG 636
E ++ I + ++ L+ S L SK S + V Q
Sbjct: 734 AEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQA 793
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ D F +++L HFE+ + P AK G + F+ GL P E H+
Sbjct: 794 ISGSRVPD--GFENRSL-----PHFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHT 841
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
++ RE +V ++ +E G + + L+ L D+ YD TVR+ + IIQF Y +
Sbjct: 842 MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPA 900
Query: 757 SLFPAGEPV 765
++ EP+
Sbjct: 901 AMEGKDEPL 909
>gi|341858990|gb|AEK97405.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 167/643 (25%), Positives = 277/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR------- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKENKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPTEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 158/653 (24%), Positives = 282/653 (43%), Gaps = 118/653 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V N L++LV N ++ L + + S +L+ G K
Sbjct: 301 TYPETVTRFNAEKLKQLVVNGPERHPGARYIIREHGERIDLRFHKNTDSITLKAGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R IMDGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVLPPG----------------- 487
+ ++ +P+PA+ K R RWT Q++ VLPP
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQVISMVLPPALNLVRIDGKPSQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 522 FAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVVNYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEI----------------------------QALYS 578
L +GFS+ + D + I+ E+ + S
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 641
Query: 579 LLYHRMSTQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAG 636
+ ++ + EN ++ + + +A+ K ST+ S ++ +V Q
Sbjct: 642 KVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQS 694
Query: 637 FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHS 696
G ++ F +TL HF + +Y A G ++ + GL P E H+
Sbjct: 695 VEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHA 742
Query: 697 ISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ RE ++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 743 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|358385218|gb|EHK22815.1| hypothetical protein TRIVIDRAFT_28982 [Trichoderma virens Gv29-8]
Length = 1465
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 170/683 (24%), Positives = 288/683 (42%), Gaps = 86/683 (12%)
Query: 136 GYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G P +G +I +++P PP C+ +G ST DL+ A L +++ +IR++ +
Sbjct: 252 GLDPSEGRPEMFIWQFVPAPPVCIRPSVAQEGAST-EDDLT-AKLAEIVYISGLIRTALN 309
Query: 192 GTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
++ + LQL + Y L G KS R R Q
Sbjct: 310 KGKPMQTIMEQWEYLQLQIAMYVNSDVPGLNQPGFGKSIRGFCQRLKGKQG--------- 360
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
+ R K FS R+VI+ D +N++ VP +A+ +TF ERV N+ L++ +
Sbjct: 361 -RFRGNLSGKRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQNQNLEKLRQCIL 419
Query: 305 NKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTH 355
N + +G+ L+ G + LR G +V R + DGD V NR P+ H
Sbjct: 420 NGPKVWPGANHVIKDNGNWKQDLQFGDRALVARDLRIGDIVERHLEDGDVVLFNRQPSLH 479
Query: 356 KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 415
K S+ + + T ++N +CGP +ADFDGD ++L PQS A+AE + L V+ L
Sbjct: 480 KLSIMSHLAKIRPWRTFRLNECVCGPYNADFDGDEMNLHVPQSEEARAEAITLMGVKNNL 539
Query: 416 LSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAFTQQLA--MFALSPLPRPALSKARCS 471
+ NG + D + + ++ K ++ K FT M ++ L P S +
Sbjct: 540 ATPKNGEPIIAATQDFITASYLLSSKDRFYNRKTFTYICTHMMDGVTHLDLPPPSIIKPE 599
Query: 472 ARWTALQILQSVLPPGFDS-------------------CGDR------YLIKKSEVLKGD 506
A WT QI ++ P S C D +I+ SEV+ G
Sbjct: 600 ALWTGKQIFNVLMRPNKQSPVLVNLDARCREYSARPGQCPDMDPNDAWLVIRNSEVMCGR 659
Query: 507 FDRDTIPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF----SL 561
D+ I S N + I + GP+ + + L L L GFS+ + D L
Sbjct: 660 MDKSIIGSGKKNSVFYIILRDFGPDHAVMAMNRLTKLCARQLGNQGFSLGVGDVFPITEL 719
Query: 562 SKAALWNIQKEIQALYSLLYHRMSTQ---------NELVDLQIENHIRHVKMLVAK---- 608
+K+ +Q SL+ + + + +++ I + V+ +
Sbjct: 720 TKSRDRLVQDAYDKSDSLIETFKAGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCVD 779
Query: 609 FILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMD 668
+ +++ + +S S V Q +G Q+ G+ + HF + +
Sbjct: 780 TLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIG-GQRVPDGFQDRSLPHFHK----N 834
Query: 669 LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVV 728
P +K G ++ F+ GL P E H+IS RE ++ ++ +E G + + LM L D+
Sbjct: 835 ARQPASK-GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLS 893
Query: 729 ICYDGTVRNVCSNSIIQFDYAVN 751
YD TVR S +I+QF + +
Sbjct: 894 TQYDNTVR-TSSGTIVQFQFGAD 915
Score = 41.2 bits (95), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 16 GIRFGLATQKEICTASISDCSI-------SHASQLANPFLGLPL----EFGKCESCGTSE 64
GI+FG+ + ++I + + S ++ S L N L L + + GKC +C E
Sbjct: 24 GIKFGIQSNQDIVNQGVLEVSQRMLYDIDNNRSPLINGALDLRMGTSSKSGKCGTC--QE 81
Query: 65 PGK-CEGHFGYIELPIPIYHPSHI 87
P K C GHFG++ L +P +H ++
Sbjct: 82 PLKFCIGHFGHVRLALPAFHIGYL 105
>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
Length = 989
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 165/647 (25%), Positives = 285/647 (44%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRIHAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++ V N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R I+DGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIVDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL---------------PPG-- 487
+ ++ +P+PA+ K R RWT Q++ VL PPG
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQMVSMVLPSALNLVRIDGKASQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++
Sbjct: 522 FAPVGDSGLFVADGQLMFGMFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLIDSK---------SDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ S+T L DS S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|91773158|ref|YP_565850.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
gi|91712173|gb|ABE52100.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
Length = 883
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 171/660 (25%), Positives = 280/660 (42%), Gaps = 71/660 (10%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVE 202
IL LPVPP + P I+ S D L +++ + + +R +G P +++
Sbjct: 211 ILTVLPVPPVTVR-PSITLESGQRSEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLW 269
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ + Y EV G + S P T L+ F SG
Sbjct: 270 EL-LQYHLTTYFDNEVSGVPPARHR-------SGRPLKTLTQRLKGKEGRFRGSLSGKRV 321
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL------T 310
FS+R+V++ D +NE+GVP IAQ +T RV NI+ ++E V +
Sbjct: 322 NFSARTVVSPDPNLSINEVGVPLSIAQHMTIPVRVISKNIDLMREYVRRGREVHPGANYV 381
Query: 311 YSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D + E +K L PG + R++ DGD V NR P+ HK S+ A V V
Sbjct: 382 IRDDERRIKVTELNKEELLEKLEPGWSIERQMQDGDIVLFNRQPSLHKMSIMAHRVKVLP 441
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
+ T K+NP +C P +ADFDGD +++ Q+ ++AE L V++ +LS G +
Sbjct: 442 NKTFKLNPAVCPPYNADFDGDEMNMHVLQTEESRAEASILMQVQENILSPRFGGPIIGGI 501
Query: 429 TDALLSLKVMFK--KYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + L ++ + K+ + L L LP PA W QI +LP
Sbjct: 502 HDHISGLFLLTRNEKFISKNDALELLRKSELRVLPEPAGHLEDGEPYWNGKQIFSQILPK 561
Query: 487 GF------------DSCG------DRY-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEK 527
G D+C D Y +I+ E++KG D I + ++ + E
Sbjct: 562 GLYVEFPAQVCFKCDTCKKGDCEYDAYVVIEDGELIKGTIDEQAIGAFKGRVLDKVVKEF 621
Query: 528 GPEEVLEFFDSLQPLLMENLFADG--FSVSLEDFSLSKAA-----LWNIQKEIQALYSLL 580
G +F D L + + G F +S ED L L + +KE+ L
Sbjct: 622 GTTAGAKFVDDFTRLAIRGVMHTGLSFGISDEDIPLEAKEGIAIRLQDAEKEVAELVQAY 681
Query: 581 YHRM------STQNELVDLQIENHIRHVK-----MLVAKFILKSSTLGYLIDSKSDSAVS 629
++ T +E ++++I + + M L++S + + S + ++
Sbjct: 682 ENKELEALPGRTLDETIEMRIMQTLGKARDDTGGMADKSLGLENSAV-IMARSGARGSIL 740
Query: 630 KVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDP 689
+ Q A +G Q + RG+ + HF++ DL +G +K + GL+P
Sbjct: 741 NLTQMAACVG-QQAVRGERIRRGYAGRTLPHFDK---GDLG--ADAHGFVKASYKSGLNP 794
Query: 690 YEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
E H+I RE +V ++ S+ G L + L+ L+D+ + YDG+VR I+QF Y
Sbjct: 795 TEYFFHAIGGREGLVDTAVRTSQSGYLQRRLVNALQDLEVQYDGSVRET-RGVIVQFKYG 853
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 18/84 (21%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFG-------------KCES 59
+I I+FGL + +E+ S++ SI A + G P++ G KC+S
Sbjct: 13 RIGAIKFGLISPREVRKMSVT--SIITADTYDDD--GYPIDMGLMDLRLGVIDPGLKCKS 68
Query: 60 CGTSEPGKCEGHFGYIELPIPIYH 83
CG S G+C GHFG+IEL P+ H
Sbjct: 69 CG-SRAGECPGHFGHIELVAPVIH 91
>gi|341858972|gb|AEK97396.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858976|gb|AEK97398.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858978|gb|AEK97399.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858980|gb|AEK97400.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 694
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 695 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 744
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 745 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oreochromis niloticus]
Length = 1390
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 200/758 (26%), Positives = 320/758 (42%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F + I+++ + + LL+ E V + +RIPEE L AGK P D
Sbjct: 194 LQSFDIAIEHNKLVEPLLTRAQENLNPLVVLNLFRRIPEEDIPLLLMNPEAGK---PAD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
I+ L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL---- 309
K FS R+VI+ D R++E+ VP +A+ +T+ ERVN N+ +++LV N +
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPGA 418
Query: 310 -------TYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
T Y RE K LR G +V R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQNRHTQIKRFLKYGNRE--KIAQELRFGDLVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 IARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS--------PLPRPALSKARCSAR 473
+ D L ++ K F D++ Q+ L LPRPA+ K A
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDERVRISLPRPAIIKP--MAL 594
Query: 474 WTALQILQSVLPP-------------GFDSCG--------DRY-LIKKSEVLKGDFDRDT 511
WT QI +L P G CG D + +I SE++ G D+ T
Sbjct: 595 WTGKQIFSLILKPSKECPVNANLRTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQ 570
+ S N I + + G E L L L GFS+ + D + + L Q
Sbjct: 655 LGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQ 714
Query: 571 -----------KEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
+ I+AL + L T E ++ I + ++ L+
Sbjct: 715 DLLDDGYKKCDEYIEALDTGKLQQQPGCTAEETLEALILKELSVIRDRAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 130 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 183
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 184 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 243
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 244 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 299
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 300 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 353 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 412
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 413 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 472
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 473 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 532
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 533 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 589
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 590 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 649
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 650 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 709
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 710 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 769
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 770 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 829
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 830 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 868
>gi|343427900|emb|CBQ71425.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1400
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 182/707 (25%), Positives = 304/707 (42%), Gaps = 102/707 (14%)
Query: 119 EMLKRIPEETRKKLAGKGYF--PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
++ KRI +E + L + F P++ YI +Y+ VPP C+ P ++ +T D++I +
Sbjct: 223 DLFKRISDEDCELLGLRPEFGRPEE-YIWQYICVPPVCIR-PSVAQDGATNEDDVTIKLT 280
Query: 177 KKV----LKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE-------VRGTAKSSRD 225
+ + L ++ +++ + T + Q+ E LQL V Y+ V+ K SR
Sbjct: 281 EVIFTNSLLKLGLVKGGKGTTTSQLVQQWEF--LQLTVALYINSELPGVPVQPGQKPSRG 338
Query: 226 VDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
R Q + R K FS R+VI D +++E+ VP +A+ +
Sbjct: 339 FCQRLKGKQG----------RFRGNLSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKIL 388
Query: 286 TFEERVNVHNINYLQELVDNKLCLT-----YSDGSSSY-------SLREGSKGHTFLRPG 333
T+ ERV HNI L++ V N + DG + + +RE LR G
Sbjct: 389 TYPERVFEHNIEQLRQAVRNGTDVHPGANYLMDGKTGFKRFLKFPGMREELAQK--LRVG 446
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
+V R I DGD V NR P+ HK S+ + + T ++N C P +ADFDGD +++
Sbjct: 447 DIVERHIRDGDIVLFNRQPSLHKLSIMSHRAKIRPWRTFRLNECACNPYNADFDGDEMNM 506
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKA-FTQQ 451
PQ+ A+ E L V+ L++ NG + D + + ++ K+ F D+A F+Q
Sbjct: 507 HVPQTEEARTEATVLMGVKHNLVTPRNGEPIIAAIQDFITASYLISKRDRFFDRAQFSQI 566
Query: 452 LAMFALS----PLPRPALSKARCSARWTALQILQSVLPPGFDS---------C------- 491
+ FA + LP PA+ K WT Q++ ++ P S C
Sbjct: 567 CSYFADADLQIDLPPPAIMKP--VRLWTGKQVMSCLIRPNRKSPHLVNLEAQCRTFEKPT 624
Query: 492 ---------GDRYL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
D +L I SEV+ G FD+ T+ N + + + GP+ + + L
Sbjct: 625 GGHPKDMSPNDGWLVIVNSEVMCGVFDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLA 684
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS--LLYHRMSTQNELVDL----- 593
L GFS+ + D N +++A Y+ L + +L +L
Sbjct: 685 KTCARWLANQGFSLGINDVIPGPNLRDNKDAKVEAAYTECLDLIEKAKHGKLENLPGCDQ 744
Query: 594 --QIENHIRHV---------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
+EN I V ++ + + ++ L + S ++ V Q +G Q+
Sbjct: 745 EQTLENMISGVLSGVRSDVGEICMTELSRHNAPLVMAVCGSKGSKIN-VAQMVACVGQQI 803
Query: 643 SDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
G + HF P P +K G ++ FF GL P E + H+IS RE
Sbjct: 804 I-AGSRVPNGFQDRSLPHF----PKKSKDPPSK-GFVRNSFFSGLSPTEFLFHAISGREG 857
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+V ++ +E G + + LM L D+ YD +VRN ++QF Y
Sbjct: 858 LVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNSVG-GVVQFIYG 903
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 183/747 (24%), Positives = 305/747 (40%), Gaps = 85/747 (11%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEML 121
+ E K +GH G Y P +I L + A + D +++ + V E+L
Sbjct: 166 SREQPKKQGHGGCGR-----YQP-NIRRAGLDLTAEWKHVNEDSQEKKIPLTAERVWEIL 219
Query: 122 KRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
K I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 220 KHIIDEECLILGMDPRYARPDWMIVTSLPVPPLSVRPAVVMHGSARNQDDLTHKLSDIIK 279
Query: 181 KQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKSSRDVDARFG 231
E+IR+ ++G S V S + LQ V ++ R KS + + A
Sbjct: 280 CNNELIRNEKAGA----SAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAI-- 333
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
S K ++R + K FS+R+VIT D R++++GVP IAQ +TF E V
Sbjct: 334 -----KSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIV 388
Query: 292 NVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGD 344
N + ++ELV D LR K L+ G V R I DGD
Sbjct: 389 TPFNFDKMKELVHRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGD 448
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AE
Sbjct: 449 LVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE 508
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPL 460
V L +Q+++ + + D L +++ M K+ FLDK + M +
Sbjct: 509 VENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMHLPIWDGKM 568
Query: 461 PRPALSKARCSARWTALQILQSVLPPGFD--------------------SCGD-RYLIKK 499
P+P + K R WT Q+ ++P + S GD + +++
Sbjct: 569 PQPCILKPR--PLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDNGPYKWISPGDTKVVVEH 626
Query: 500 SEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF 559
E++ G + T+ + ++ E G E F+ ++Q ++ L +G S+ + D
Sbjct: 627 GELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDT 686
Query: 560 SLSKAALWNIQKEIQALYSLLY------HRMS---TQNELVDLQIENHIRHV-------- 602
IQ+ I+ + + H M T + EN + +
Sbjct: 687 IADPQTYVEIQRAIKKAKADVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKT 746
Query: 603 KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE 662
K + + + L ++ S S + + Q +G Q + GK + HF
Sbjct: 747 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF- 804
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
+ +Y G ++ + GL P E H++ RE ++ ++ +E G + + L+
Sbjct: 805 ----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIK 860
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ V++ YDGTVRN +IQ Y
Sbjct: 861 AMESVMVNYDGTVRNSVGQ-LIQLRYG 886
>gi|322369999|ref|ZP_08044561.1| DNA-directed RNA polymerase subunit A' [Haladaptatus
paucihalophilus DX253]
gi|320550335|gb|EFW91987.1| DNA-directed RNA polymerase subunit A' [Haladaptatus
paucihalophilus DX253]
Length = 976
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 163/645 (25%), Positives = 280/645 (43%), Gaps = 55/645 (8%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 285 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 343
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 344 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 395
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN----KLCLTYS 312
FS+R+VI+ D +NE+GVP +A+ +T V +I + V N Y
Sbjct: 396 NFSARTVISPDPTLSLNEVGVPRRVAREMTQTMNVTPRSIEEARRYVRNGPEGHPGANYV 455
Query: 313 DGSSSYSLREGSKGHTFL----RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
L+ K L PG V+R ++DGD V NR P+ H+ S+ A V V
Sbjct: 456 KRPDGRRLKVTEKNCEELAEKVEPGWEVNRHLIDGDIVIFNRQPSLHRMSIMAHEVVVMP 515
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N ++C P +ADFDGD +++ Q+ A+AE L V++Q++S G +
Sbjct: 516 YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQIISPRFGENIIGAI 575
Query: 429 TDALLS--LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + L +F + L + LP ++ + WT + +LP
Sbjct: 576 QDHISGTYLLTHHNPHFNETQALDLLRATRIDELPEEDGTEEDGTPYWTGQTLFSELLPN 635
Query: 487 GFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
G + S GD +I+ ++++G D D + + EIV +I E G F + +
Sbjct: 636 GIELEFTSSTGDTVVIENGQLIEGTIDEDAVGAFGGEIVDTICKEYGETRARHFINEVAT 695
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST---------QNELVD 592
L M + GFS+ ++D ++ A I + I Y + + T VD
Sbjct: 696 LAMRAIMHFGFSIGIDDETIPVGAQEQIDEAIDNAYERVQDLIQTYENGDLESLPGRTVD 755
Query: 593 LQIENHI-------RHVKMLVAKFILKSSTLGYLI-DSKSDSAVSKVVQQAGFLGLQLSD 644
+E I R +A+ S ++ DS + ++ + Q AG +G Q +
Sbjct: 756 ETLEMKIMQTLGKARDSAGDIAEDHFASDNPAVIMADSGARGSLLNLTQMAGCVG-QQAV 814
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIV 704
RG+ ++ + SH++ DL+ +G ++ + GL P E H++ RE +V
Sbjct: 815 RGERINRGYEDRTLSHYQ---ADDLS--ADAHGFVEHSYTGGLTPLEFFFHAMGGREGLV 869
Query: 705 RSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 870 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-SSDTIVQFEFG 913
>gi|341858996|gb|AEK97408.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341858998|gb|AEK97409.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 166/642 (25%), Positives = 278/642 (43%), Gaps = 77/642 (11%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 168 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 226
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 227 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 279
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 280 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 339
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V T ++N + P +AD
Sbjct: 340 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXXXXXVMPYSTFRLNLSVTSPYNAD 399
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 400 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 459
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDRY---- 495
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D+
Sbjct: 460 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDKLDNPR 517
Query: 496 -----LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 518 HDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 577
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 578 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 635
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + +
Sbjct: 636 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFG 695
Query: 648 FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSS 707
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ ++
Sbjct: 696 FKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTA 745
Query: 708 RGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 746 VKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 786
>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
Length = 1473
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 188/724 (25%), Positives = 297/724 (41%), Gaps = 130/724 (17%)
Query: 119 EMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
E+L IPE+ R ++ I EY+PVPP L + +G +T D +
Sbjct: 253 ELLAMIPEDARPEM----------LIWEYMPVPPVALRPSVMQEGGAT--EDDVTNKIGD 300
Query: 179 VLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQY-------LEVRGTAKSSRDVDARFG 231
+ + IIR+ + + + + LQL + Y L+ +G K+ R R
Sbjct: 301 ICQISSIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRL- 359
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
K + R K FS R+VI D ++E+ VP +A+ +T+ E+V
Sbjct: 360 ---------KGKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKV 410
Query: 292 NVHNINYLQELVDNKLC-----------LTYSDGSSSYSL----REGSKGHTF------L 330
+NI LQ+LV N L SL R KG L
Sbjct: 411 TRYNIKKLQKLVLNGANKYPGANYILKDLGPDQDPRKVSLIALSRHDKKGDRLQGPAAAL 470
Query: 331 RPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 390
R G VV R + DGD V NR P+ HK S+ + + T ++N +C P +ADFDGD
Sbjct: 471 RFGDVVERHLEDGDIVLFNRQPSLHKLSILSHRAKIRPWRTFRLNECVCNPYNADFDGDE 530
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK--YFLDKAF 448
++L PQ+ A+ E EL V+ L + NG + D + + ++ K ++ + F
Sbjct: 531 MNLHVPQTEEARTEATELMGVKYNLATPKNGTPIIAAIQDFITAAFILSNKSNFYDRRTF 590
Query: 449 TQQLA-MF----ALSP---------LPRPALSKARCSARWTALQILQSVLPPGFDS---- 490
Q + MF A P +P P + K + A WT Q+ ++ P S
Sbjct: 591 CQIVNYMFTGEGAYDPDTGKYLPIEIPPPVIWKPQ--ALWTGKQVFNLLMRPNKQSRVLV 648
Query: 491 -----C---------------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEK-G 528
C D YL I+ SEV+ G D+ T+ E V + G
Sbjct: 649 NLEAGCKQYKPVQGRAPDLDENDAYLIIRNSEVMCGVMDKSTVGDGKKESVFYVMMRDFG 708
Query: 529 PEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYS---------- 578
PE ++ + L L L +GFS+ + D + + Q ++ Y+
Sbjct: 709 PEHAVQGMNRLARLSARWLTNNGFSLGISDVTPGEVLNQKKQALVEEAYAKCDKLIKDFK 768
Query: 579 ---LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK------SSTLGYLIDSK-SDSAV 628
L + + +++QI + V+ + S L SK S+ V
Sbjct: 769 EGKLQRAAGCDEEQTMEVQIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINV 828
Query: 629 SKVVQQAG---FLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFH 685
S++V G G +++D F+ +TL HF P P AK G + F+
Sbjct: 829 SQMVASVGQQMIGGARVAD--GFHHRTL-----PHF----PKAARQPAAK-GFVSNSFYS 876
Query: 686 GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQ 745
GL P E + H++S RE +V ++ +E G + + LM L D+ YD TVRN S +++Q
Sbjct: 877 GLTPSEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRN-SSGTVVQ 935
Query: 746 FDYA 749
F Y
Sbjct: 936 FQYG 939
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 10 LEGQIVGIRFGLATQKEICTASISDCSISHASQLA---------------NPFLGLPLEF 54
+ +I I+FG+ + ++I ++ + S + L +P +G+ +
Sbjct: 16 IPARIKHIQFGIYSNQDIVNQAVIEVSDRNVYDLTPAADNTRALTANGPMDPLMGISSKT 75
Query: 55 GKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
G+C +CG + KC GHFG+I+L +P +H ++ +
Sbjct: 76 GECGTCG-EKLDKCNGHFGHIKLALPAFHVGYLKHI 110
>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
Length = 881
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 179/700 (25%), Positives = 300/700 (42%), Gaps = 80/700 (11%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGV 164
R+ + E++ L+R+P + + L G+ P+ +L LPVPP + P I
Sbjct: 174 RVQLNPLEIRSRLERVPNDDARLL---GFDPESARPEWMVLTVLPVPPIHVR-PSIVLET 229
Query: 165 STMSSDLSIAMLKKVLKQVEIIRS-SRSGTPNFESQEVESNDLQLAVGQYLE---VRGTA 220
+ D L +++ E +R SG P E LQ V Y + R
Sbjct: 230 GIRAEDDLTHKLADIVRTNERLRELIDSGAPQTLIDE-HWTLLQYHVATYFDNELPRIPV 288
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
R G++Q K + R K +S+R+VI+ D +NE+GVP E
Sbjct: 289 ARHRGGRPLKGLAQ----RLKGKEGRFRGNLSGKRVDYSARTVISPDPNISINEVGVPIE 344
Query: 281 IAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGHTFLRP 332
IA+ +T V NI ++ V N +T + + L P
Sbjct: 345 IAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPGANYVITKDGRKIDLRYADRKRIAEMLEP 404
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIH 392
G V R + DGD V NR P+ H+ S+ A V V T ++N L+C P +ADFDGD ++
Sbjct: 405 GWFVERHLRDGDIVLFNRQPSLHRMSIMAHIVKVLPGKTFRLNLLVCPPYNADFDGDEMN 464
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQL 452
L P++ A+AE EL V+ +LS G + D + ++ K L TQ+
Sbjct: 465 LHVPRTEEAQAEARELMLVQYHILSPRYGGPIIGGLQDYISGAYLLTSKATL---LTQED 521
Query: 453 AMFALSP------LPRPALSKARCSARWTALQILQSVLPPGFD------------SCGDR 494
+ LS +P PA+ + RWT Q++ LP F+ C D
Sbjct: 522 VIDLLSAAGYRGEIPEPAILSPK--KRWTGKQLVSLFLPKDFNFKGKARVSAGIFMCEDE 579
Query: 495 Y-------LIKKSEVLKGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
+ +IKK E+L G D+ I + E ++ + E G + +D++ + +
Sbjct: 580 WCWNDSFIVIKKGELLTGVLDKKAIGAEQPENMMHWLVKEYGTDYARYVYDNMFKMFIRF 639
Query: 547 LFADGFSVSLEDFSLSKAALWNIQ---KEIQALYSLLYHRM----------STQNELVDL 593
+ GF+++++D +L A I+ +E + L + T E ++L
Sbjct: 640 IEKRGFTMTVDDVALPPEAHEKIKVVLREAEERVKELIEQYRQGKLEPVPGRTLEETLEL 699
Query: 594 QIENHI----RHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 649
+I + + + V+ +V ++ + + + + + + Q A LG Q S RG+
Sbjct: 700 RILDALSDARKKVEDIVVNYLDPFNNVFIMARTGARGNELNITQMAALLG-QQSVRGERI 758
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+ + HF+ P DL P A+ G + F+ GL P E H+ RE +V ++
Sbjct: 759 YRGYRDRFLPHFK---PGDLG-PAAR-GFVYHSFYLGLTPVEVFFHAAGGREGLVDTAVR 813
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
S+ G + + L+ L+D+ + YDGTVR I+QF Y
Sbjct: 814 TSQSGYMQRRLINALQDLRVEYDGTVRT-PYGEIVQFSYG 852
>gi|384497273|gb|EIE87764.1| hypothetical protein RO3G_12475 [Rhizopus delemar RA 99-880]
Length = 1273
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 176/686 (25%), Positives = 297/686 (43%), Gaps = 82/686 (11%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI +YLPVPP C+ P + +T + D A L +++ IIR+ + +
Sbjct: 210 YIWQYLPVPPACVR-PSVVQEDNTSNEDDLTAKLTEIIFTNAIIRAGLERGVTVMNLMEQ 268
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
LQLA Y+ E+ G ++ R G+ Q K + R K FS
Sbjct: 269 WEFLQLAAALYINSEMPGVLNATSGKPTR-GLCQ----RLKGKQGRFRGNLSGKRVDFSG 323
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL----TYSDGSS 316
R+VI+ D R++++ VP +A+ +TF ERVN HNI+ L++ V N + Y + +
Sbjct: 324 RTVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPFVHPGANYVEKQN 383
Query: 317 SYS--LREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTV 372
+ L+ G++ L+ G +V R + D D V NR P+ H+ S+ A V T
Sbjct: 384 GFKRFLKFGNRQEIAADLQIGDLVERHLSDNDVVLFNRQPSLHRLSIMAHFAKVMPWRTF 443
Query: 373 KINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL 432
+ N +C P +ADFDGD +++ PQ+ AKAE +EL V+ L++ NG + D +
Sbjct: 444 RFNECVCSPYNADFDGDEMNMHLPQTQEAKAEAMELMGVKNNLVTPRNGEPLIAATQDFI 503
Query: 433 LSLKVMFKK--YFLDKAFTQQLAMFALS----PLPRPALSKARCSARWTALQILQSVLPP 486
+ ++ K ++ F Q +M + LP P + K + WT Q+ + P
Sbjct: 504 TASYLLSHKDTFYTRGEFAQACSMMCDADLKIDLPPPVIWKPQ--RLWTGKQVFNVLFRP 561
Query: 487 GFDS-----------------------C-GDRYL-IKKSEVLKGDFDRDTI-PSVINEIV 520
+S C D +L ++ SE++ G D+ + N +
Sbjct: 562 NKESKVLLSVEAKTKSFVKQEGRLPDMCPNDGWLVVQNSEIMCGLVDKAVVGDGNKNSVF 621
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFS----LSKAALWNIQK----- 571
I + GP E + + L L L GFS+ + D + LS+ ++
Sbjct: 622 YVILRDYGPIEAAKCMNRLAKLCARWLANRGFSIGISDVTPGERLSRIKFNEVETAYAKC 681
Query: 572 -EIQALY-SLLYHRMSTQNELVDLQ--IENHIRHVKMLVAKFILKSSTL----GYLIDSK 623
E+ A Y S M NE ++ + + V+ + K ++ + +
Sbjct: 682 DEVIAKYNSGQLDTMPGCNEEQTMESIVSGILSAVRGDLGKVCMEELNMYNSPSIMARCG 741
Query: 624 SDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFE-RIYPMDLNY---PTAKYGLI 679
S + V Q +G Q+ + I + F+ R P L + P AK G +
Sbjct: 742 SKGSQINVSQMVACVGQQIISGTR---------IPNGFQDRSLPHFLKHSKTPPAK-GFV 791
Query: 680 KGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVC 739
+ F+ GL P E + H+IS RE +V ++ +E G + + LM D+ YD +VRN
Sbjct: 792 RNSFYTGLSPTEFLFHAISGREGLVDTAVKTAETGYMARRLMKAFEDLTTHYDLSVRN-S 850
Query: 740 SNSIIQFDYAVNARKSHSLFPAGEPV 765
+++QF Y + ++ G PV
Sbjct: 851 EGAMLQFFYGADGLDPMTIEGEGVPV 876
>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Takifugu rubripes]
Length = 1390
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 200/758 (26%), Positives = 318/758 (41%), Gaps = 118/758 (15%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F + I+++ V + LLS E V+ + KRI E L AG P D
Sbjct: 194 LQSFDIAIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGT---PAD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL L VPP C+ +SD S + D L +++ ++I+ R + +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMED 309
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR------- 253
+ LQL Y+ E+ G ++ P T+ ++++++ R
Sbjct: 310 WDFLQLQCALYINSELSGIP-----------LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------- 305
K FS R+VI+ D R++E+ VP +A+ +T+ ERVN N+ +++LV N
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGA 418
Query: 306 ---KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
+ T Y RE K LR G VV R ++DGD V NR P+ HK S+ A
Sbjct: 419 NFIQNRFTQIKRFLKYGNRE--KIAQELRLGDVVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG
Sbjct: 477 IARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 423 LNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS--------PLPRPALSKARCSAR 473
+ D L ++ K F D++ + Q+ L LPRPA+ K A
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRSKSCQIVASILVGKDEKVRISLPRPAIMKP--MAL 594
Query: 474 WTALQILQSVLPP-------------GFDSCG--------DRY-LIKKSEVLKGDFDRDT 511
WT QI +L P G CG D + +I SE++ G D+ T
Sbjct: 595 WTGKQIFSVILKPSKECPVNANLRTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKGT 654
Query: 512 IPS-VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL---- 566
+ S N I + + G E L L L GFS+ + D + ++ L
Sbjct: 655 LGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQSLLKAKH 714
Query: 567 -------WNIQKEIQALYS--LLYHRMSTQNELVDLQIENHIRHVKMLVAKFILK----- 612
+ I AL + L + E ++ I + ++ L+
Sbjct: 715 DLLDDGYMKCDEYIDALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKS 774
Query: 613 -SSTLGYLIDSKSD----SAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 667
S + L SK S + V Q G ++ D F +++L HFE+ +
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD--GFENRSL-----PHFEKHSKL 827
Query: 668 DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 727
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+
Sbjct: 828 ----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 882
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
YD TVR+ + IIQF Y + ++ EP+
Sbjct: 883 CSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPL 919
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 163 bits (412), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 188/760 (24%), Positives = 318/760 (41%), Gaps = 75/760 (9%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + + + + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLE------VRGTAKS 222
+ K+ V+I R N + V + D LQ V ++ R KS
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKS 332
Query: 223 SRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIA 282
R + + K ++R + K FS+R+VIT D ++++GVP IA
Sbjct: 333 GRPLKSL-------KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 283 QRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQV 335
+TF E V NI+ LQELV D LR K L+ G
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 445
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R + DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L
Sbjct: 446 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 505
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAM 454
PQSL +AE+ EL V + +++ + + + D L +++ K+ FL++ L M
Sbjct: 506 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 565
Query: 455 FALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSC-------------------- 491
F + +P+PA+ K R WT QI S++ PG +C
Sbjct: 566 FLSTWDGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINCIRTHSTHPDDEDSGPYKHIS 622
Query: 492 -GD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
GD + +++ E++ G + ++ + +V + E G + F+ ++Q ++ L
Sbjct: 623 PGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLI 682
Query: 550 DGFSVSLEDFSLSKAALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
+G ++ + D +IQ I +A ++ N ++ N +R
Sbjct: 683 EGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVN 742
Query: 609 FIL-----KSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHF-- 661
IL K+ + S+ ++ S VV A + +S + VE F
Sbjct: 743 RILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 662 -ERIYP--MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
R P + +Y G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 803 KHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
L+ + V++ YD TVRN N ++Q Y + S+
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNM-T 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>gi|392572905|gb|EIW66048.1| hypothetical protein TREMEDRAFT_72470 [Tremella mesenterica DSM
1558]
Length = 1457
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 175/710 (24%), Positives = 295/710 (41%), Gaps = 96/710 (13%)
Query: 108 QRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTM 167
QR+ + CE +L PE R P+D YI Y+ VPP + P ++
Sbjct: 236 QRITAEDCE---LLSLHPEVGR---------PED-YIWRYVSVPPPAIR-PSVASESGNN 281
Query: 168 SSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVD 227
DL++ L ++ ++++ + E +L V Y+ + S
Sbjct: 282 EDDLTVK-LAEIAHYNKLLQLTMESGRGIEQIMANWENLGQVVALYINSQTPGLSVPGSK 340
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
G Q K + R K FS R+VI D R++E+ VP ++A ++++
Sbjct: 341 PNRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSY 396
Query: 288 EERVNVHNINYLQELV---------DNKLCLTYSDGS---SSYSLREGSKGHTF----LR 331
ERVN +NI +++ + N L DG+ ++ + + + T L+
Sbjct: 397 PERVNNYNIVAMRQAIIHGAKLHPGANILERKAPDGTTVRTALHMIKDVERRTLVARELK 456
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCI 391
G VVHR + DGD NR P+ HK S+ V V T ++N +C P +ADFDGD +
Sbjct: 457 IGDVVHRHVRDGDIALFNRQPSLHKLSIMCHRVRVRPWRTFRLNECVCNPYNADFDGDEM 516
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK--KYFLDKAFT 449
+L PQ+ A+ E LEL SV+K L++ NG + D + ++ + ++F + FT
Sbjct: 517 NLHIPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITGSFLLSRRDRFFSRQQFT 576
Query: 450 QQLAMFALSPL----PRPALSKARCSARWTALQILQSVLPPGFDS---------C----- 491
Q + F + L P P + K + WT QI ++ P S C
Sbjct: 577 QICSFFCDADLDIDIPPPTIWKPQ--RLWTGKQIFNVLMKPNRRSRIKVNLEAKCRTMKD 634
Query: 492 -------------GDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFF-EKGPEEVLEFF 536
D YL I SE++ G FD++T+ + V + + GP+E
Sbjct: 635 PDPKDHFPPDMSPNDGYLVIVNSEIMCGVFDKNTVGDGKKKSVFGVILRDYGPDEAAAGM 694
Query: 537 DSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALY------------SLLYHRM 584
+ L L L GFS+ + D + +++ Y LL +
Sbjct: 695 NRLAKLAARWLANQGFSLGINDVIPGPKLHLSKDGKVEEAYKYCDDLIEKAKKGLLENAP 754
Query: 585 S-TQNELVDLQIENHIRHVKMLVAKFIL----KSSTLGYLIDSKSDSAVSKVVQQAGFLG 639
Q+ ++ QI + V+ V + + + + + S +V V Q +G
Sbjct: 755 GCDQDTTLEQQISGTLSKVRGEVGELCMQDLSRHNAPLIMATCGSKGSVINVAQMVACVG 814
Query: 640 LQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIST 699
Q+ G + HF + N P+ G ++ F+ GL P E + H+IS
Sbjct: 815 QQIIS-GNRIPNGFQDRSLPHFHK---KSRNPPSK--GFVRNSFYTGLSPTEFLFHAISG 868
Query: 700 REVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE +V ++ +E G + + LM + D+ YD +VRN ++QF Y
Sbjct: 869 REGLVDTAVKTAETGYMARRLMKAMEDLSTHYDLSVRN-SEGGVVQFQYG 917
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Query: 51 PLEFGK-CESCGTSEPGKCEGHFGYIELPIPIYH 83
P E G+ C +CG EP KC GH+G+I+L +P++H
Sbjct: 72 PNEKGRRCLTCG-EEPAKCVGHYGFIKLALPVFH 104
>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia
viridescens]
Length = 999
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 165/654 (25%), Positives = 289/654 (44%), Gaps = 120/654 (18%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINTEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGS-----------KGHTFLRPGQ 334
T+ E V NI+ L+ L+ + + + Y +RE + KG T L+ G
Sbjct: 301 TYPETVTPFNISKLKNLI---IRGPENHPGARYIIRENNERIDLRYHKDLKGIT-LKTGW 356
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 357 KVERHIMDGDIILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLA 453
PQS ++AE+ +L V ++S + + D L + K+ + FL + +
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIM 469
Query: 454 MFAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGD 493
++ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 470 LWVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGD 527
Query: 494 RYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++ L +GF
Sbjct: 528 SGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYRLLHNGF 587
Query: 553 SV----SLEDFSLSKAALWNIQK---------------EIQALYSLLYHR---------- 583
S+ ++ DF + + + K +++AL +
Sbjct: 588 SIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAAL 647
Query: 584 --------MSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQA 635
+T+N L D I N I+ +A+ K ST+ S ++ +V Q
Sbjct: 648 NGARDEAGTATENSLKD--INNAIQ-----MARAGSKGSTINI-------SQMTAIVGQQ 693
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
G ++ F +TL HF + +Y A G ++ + GL P E H
Sbjct: 694 SVEGKRIP--FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFH 741
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+++ RE ++ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYG 794
>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1419
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 180/706 (25%), Positives = 298/706 (42%), Gaps = 113/706 (16%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI +Y+ VPP C+ P ++ +T DL++ + + + I G P E +
Sbjct: 261 YIWQYIHVPPVCIR-PSVAQEAATNEDDLTVKLTEIIFTNTLIKTGLVKGVPTQNIME-Q 318
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSS 260
+QL+V Y+ E+ G S V G Q K + R K FS
Sbjct: 319 WEFMQLSVAMYINAELPGVP-SQMGVKPIKGFCQ----RLKGKTGRFRGNLSGKRVDFSG 373
Query: 261 RSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL----------- 309
R+VI+ D + E+ VP +A+ +T+ ERV HNI+ L++ + N +
Sbjct: 374 RTVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDIHPGANYLVAGS 433
Query: 310 -TYSDGSS---SYSLREGSKGHT--FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
T + GS+ SL+ G++ H LR G V R + DGD V NR P+ HK S+ +
Sbjct: 434 TTNASGSALPFKRSLKFGNRNHVANTLRLGDTVERHLHDGDVVLFNRQPSLHKLSIMSHR 493
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T + N +C P +ADFDGD ++L PQ+ A+ E EL +++ L++ NG
Sbjct: 494 AKIRPWRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARTEATELMNIKYNLVTPRNGEP 553
Query: 424 NLQLATDALLSLKVMFKK--YFLDKAFTQQLAMFALSP----LPRPALSKARCSARWTAL 477
+ D + + ++ +K ++ + F+Q L + + LP P + K WT
Sbjct: 554 IIAATQDFITASFLLSRKDNFYDRQQFSQILQYLSDATLHIDLPPPVIWKP--VRLWTGK 611
Query: 478 QILQSVLPPGFDS---------------CGDRYL-----------IKKSEVLKGDFD--- 508
Q+ ++ P DS YL I+ SE++ G D
Sbjct: 612 QVFNVLMRPNKDSPVKVNVEAKCATHQKAAPEYLPDMSPNDGWLVIQNSEIMCGVVDKAI 671
Query: 509 -----RDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED----- 558
+D+I +VIN + GP+E ++ + L + L GFS+ + D
Sbjct: 672 VGGGKKDSIFAVIN-------CDFGPDEAVKAMNRLAKVSARWLANMGFSIGVGDVTPGE 724
Query: 559 -FSLSKAALWNIQKEIQALYSLLYHRMSTQNEL-----VDLQIENHIRHV---------K 603
S K AL + K + L+ + + E +D +E I V +
Sbjct: 725 RLSTQKNAL--VAKAYKETDELIQQSKAGKLETLPGRDLDQTLEAMISGVLSKVRDSLGE 782
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
+ +A+ ++ L + S + V Q +G Q+ + F ++L
Sbjct: 783 ICMAELTRHNAPL-IMATCGSKGSKINVAQMVACVGQQIISGNRIPDGFQDRSL-----P 836
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + P AK G ++ F GL E + H+IS RE +V ++ +E G + +
Sbjct: 837 HFHK----KAKEPPAK-GFVRNSFHSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRR 891
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
LM L D+ YD +VRN ++QF Y + L GEPV
Sbjct: 892 LMKALEDLATRYDDSVRNSVG-GVVQFTYGDDGLDPTYLEGDGEPV 936
>gi|157741516|gb|ABV69463.1| RNA polymerase II largest subunit, partial [Placidium lachneum]
Length = 989
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 164/647 (25%), Positives = 286/647 (44%), Gaps = 106/647 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDN-----------------KLCLTYSDGSSSYSLREGSKGHT 328
T+ E V NI+ L++ V N ++ L Y +S +L+ G K
Sbjct: 301 TYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK--- 357
Query: 329 FLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDG 388
V R I+DGD + NR P + V V T ++N + P +ADFDG
Sbjct: 358 -------VERHIVDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDG 403
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKA 447
D ++L PQS ++AE+ +L V ++S + + D L + K+ + FL +
Sbjct: 404 DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463
Query: 448 FTQQLAMFAL---SPLPRPALSKARCSARWTALQILQSVL---------------PPG-- 487
+ ++ +P+PA+ K R RWT Q++ VL PPG
Sbjct: 464 EVMNIMLWVPDWDGVIPQPAIFKPR--PRWTGKQMVSMVLPSALNLVRIDGKASQPPGER 521
Query: 488 FDSCGDRYL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
F GD L + +++ G F++ ++ + N ++ +IF E G E + FF+ Q ++
Sbjct: 522 FAPVGDGGLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYW 581
Query: 547 LFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQ----------IE 596
L +GFS+ + D + I+ E+ + + R++ DL+ E
Sbjct: 582 LLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEV-ERITQSAVAEDLEALPGMNVRETFE 640
Query: 597 NHIRHVKMLVAKFILKSSTLGYLIDSK---------SDSAVSKVVQQAGFLGLQLSDRGK 647
+ + + A+ S+T L DS S + + Q +G Q S GK
Sbjct: 641 SKV-SAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVG-QQSVEGK 698
Query: 648 -----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREV 702
F +TL HF + +Y A G ++ + GL P E H+++ RE
Sbjct: 699 RIPFGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREG 748
Query: 703 IVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
++ ++ +E G + + L+ L +V + YDGTVR+ N I+QF Y
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYG 794
>gi|330507365|ref|YP_004383793.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928173|gb|AEB67975.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
Length = 875
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 212/869 (24%), Positives = 339/869 (39%), Gaps = 161/869 (18%)
Query: 13 QIVGIRFGLATQKE---------ICTASISDCSISHASQLANPFLGLPLEFGKCESCGTS 63
+I IRFGL + +E I + D L +P LG+ +C SCG
Sbjct: 6 RIGKIRFGLISPQEFRKMSVVKIITADTYDDDGFPIEMGLMDPRLGVIDPGLRCRSCG-G 64
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLT----------------------MYAFQLQ- 100
PG+C GHFG+I+L P+ H+ KL MY Q+Q
Sbjct: 65 RPGECPGHFGHIDLIAPVI---HVGFAKLIRKVLRAICRDCSRLMLKDNEKKMYLEQIQE 121
Query: 101 ------IKNDGVA------------------------QRLLS--------SCCEVKEMLK 122
+ +D V +R LS + ++++ +
Sbjct: 122 LERLGQMTDDTVNKVFAEARKNKTCPYCGAPQQEIKFERPLSYIEEGHKLTASDIRDRFE 181
Query: 123 RIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKK 178
++P+E + + G P IL LPVPP + P I+ S D
Sbjct: 182 KVPDEDIQVM---GMNPATARPEWMILTVLPVPPVTMR-PSITLESGQRSED------DL 231
Query: 179 VLKQVEIIRSSRSGTPNFESQEVES------NDLQLAVGQYLE--VRGTAKSSRDVDARF 230
K V+IIR ++ N E+ + LQ V +L+ V G +
Sbjct: 232 THKLVDIIRINQRFQENREAGAPQPIIEDLWELLQYHVTTFLDNTVSGVPPARHR----- 286
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
S P T L+ F SG FS+R+VI+ D + E+GVP +IA ++
Sbjct: 287 --SGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSIGEVGVPMDIAMELS 344
Query: 287 FEERVNVHNINYLQELV----DNKLCLTYSDGSSSYSLREGSKG----HTFLRPGQVVHR 338
N N+ ++ V D + Y ++ K + G + R
Sbjct: 345 VPMIANSRNMEIVKTFVRRGPDRHPGVNYVTRPDQRRVKVTDKNCEEVAEQIDIGWKIDR 404
Query: 339 RIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQS 398
++ DGD V NR P+ H+ S+ + V V T ++NP +C P +ADFDGD +++ PQ+
Sbjct: 405 QLADGDIVLFNRQPSLHRMSIMSHRVKVMPYKTFRLNPAVCPPYNADFDGDEMNMHVPQT 464
Query: 399 LAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS--LKVMFKKYFLDKAFTQQLAMFA 456
A+AE L V++ +LS G + D + L +K + + L F
Sbjct: 465 EEARAEAEILMRVQENILSPRFGGPIIGGIHDYVTGSFLLTHGRKPIDRRGAMELLKKFD 524
Query: 457 LSPLPRPALSKARCSARWTALQILQSVLPPGFD---------SC---------GDRYLIK 498
++ LP P + WT QI +LP G D +C D Y++
Sbjct: 525 ITELPAPE-GELNGEPYWTGKQIFSLILPRGLDLNFKADFCYNCDVCKNEECENDAYVVI 583
Query: 499 KSEVLK-GDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLE 557
+ LK G D + + +I I E P EF D + L + + GFS ++
Sbjct: 584 QDGQLKIGTIDAKAVGAFKGKITDRIIKEYSPSVASEFLDRMTRLALRGIMHAGFSFGID 643
Query: 558 DFSLSKAALWNI-----------QKEIQA-----LYSLLYHRMSTQNELVDLQIENHIRH 601
D + A+ I Q+ I+A L L + E+ +Q R
Sbjct: 644 DEDIPPEAVDQIEETTRTAREKAQQLIEAYNAGELEPLPGRTLDETLEMRIMQTLGKARD 703
Query: 602 VKMLVAKFILKSSTLGYLID-SKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH 660
+A L G ++ S + ++ + Q A +G Q S RG+ + H
Sbjct: 704 TAGKIAGRYLGLDNSGVVMAVSGARGSMLNLTQMAACVG-QQSVRGERIMRGYAGRTLPH 762
Query: 661 FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
F R DL +G ++ + GL+P E H+I RE +V ++ S+ G L + L
Sbjct: 763 FRR---GDLG--AEAHGFVESSYKDGLNPTEFFFHAIGGREGLVDTAIRTSQSGYLQRRL 817
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ L+D+ + YDGTV+ I+QF Y
Sbjct: 818 VNALQDLEVKYDGTVKET-RGMIVQFKYG 845
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 170/697 (24%), Positives = 304/697 (43%), Gaps = 101/697 (14%)
Query: 163 GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESND---LQLAVGQYLEVRGT 219
G+ + +DL+ +K +I+R++ +S E+ S LQL + ++ + T
Sbjct: 242 GMDQIENDLT-------MKLADIVRANNKLLGAVQSGEILSGKTKMLQLHIASMMDSKST 294
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ A + S P + K LE ++R + K F++R+VIT D R++++
Sbjct: 295 L-----LPAYYHESTLPTQSIKDRLEGRDGRIRGNLMGKRVDFAARTVITPDPNLRIDQV 349
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN--------KLCLTYSDGSSSYSLREGSKGH 327
G+P IAQ +TF ERV NI +QELV K C+ +G LR SK
Sbjct: 350 GIPRSIAQNMTFPERVAPFNIEKMQELVQRGNSQYPGAKFCIIKKNGDR-IDLRFPSKSP 408
Query: 328 TF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L G +V R I DGD V +NR P+ K + V V T +NP + +A+F
Sbjct: 409 DLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANF 468
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL-SLKVMFKKYFLD 445
DGD ++L PQS+ ++EV L + +++ + + D L+ + K+ + FL+
Sbjct: 469 DGDEMNLHVPQSMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLE 528
Query: 446 KAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPG--------------- 487
K L MF + +P+PA+ K R +WTA + S++ PG
Sbjct: 529 KEQMMNLLMFLPTWDGKMPQPAILKPR--PQWTA--AVHSIIIPGNVNMMRTHSTHPDDE 584
Query: 488 ------FDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ 540
+ S GD + +I+ E++ G + T+ + ++ IF E G E F+ ++Q
Sbjct: 585 DEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQ 644
Query: 541 PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYH------------------ 582
++ L +G S+ +ED IQ IQ +
Sbjct: 645 TVINNWLLYEGHSIGIEDTLADCQTYMGIQDTIQKAKEDVIEIIQKSHNDELEPTPGNTL 704
Query: 583 RMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQL 642
R + +N+ V+ + N + L + + + L + + S + Q +G Q
Sbjct: 705 RQTFENQ-VNRILNNAQQQASALAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQN 763
Query: 643 SDRGK----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
+ + F +TL HF + D N P ++ G ++ + GL P E H+++
Sbjct: 764 VEGQRIPFGFRKRTL-----PHFIK----DDNGPESR-GFVENSYLTGLTPSEFYFHAMA 813
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
RE+++ +R ++ + + L+ + V++ YDGTVRN + ++QF Y + + S+
Sbjct: 814 GRELLIYEARTETD---IIRQLVKGMESVMVHYDGTVRN-SAGRLLQFCYGEDGLAAESV 869
Query: 759 FPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELM 795
P +SN ++ PS+ ++ M
Sbjct: 870 ELQKMP-----TVNLSNTVFEKKFKFDPSNEHNLRSM 901
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 17 IRFGLATQKEICTASISDCSISHA----------SQLANPFLGLPLEFGKCESC-GTSEP 65
++ G+ + EI S+++ I H L +P G+ + KC++C GT
Sbjct: 18 VQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRKAKCQTCDGTI-- 75
Query: 66 GKCEGHFGYIELPIPIYH 83
+C GHFG+I L P+YH
Sbjct: 76 NECPGHFGHINLAKPVYH 93
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 176/729 (24%), Positives = 299/729 (41%), Gaps = 84/729 (11%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ- 140
Y P ++ L + A + DG +++ S V E+LK I +E L F +
Sbjct: 180 YQP-NLRRTGLEVTAEWKHVNEDGQEKKISLSAERVWEILKHITDEECFILGMDPKFARP 238
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPN----- 195
D I+ LPVPP C+ + G + DL+ + + E+ R+ SG
Sbjct: 239 DWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKCNNELTRNEHSGAATHVIAE 298
Query: 196 ------FESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRT 249
F + ND+ G ++ + K + + AR K ++R
Sbjct: 299 NIKMLQFHVATLVDNDMP---GLPRAMQKSGKPLKAIKARL----------KGKEGRIRG 345
Query: 250 LFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC- 308
+ K FS+R+VIT D R++++GVP IA +TF E V NI+ + ELV
Sbjct: 346 NLMGKRVDFSARTVITPDPNLRIDQVGVPRTIALNMTFPEIVTPFNIDKMLELVRRGNAQ 405
Query: 309 -----LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQAL 362
D LR K L+ G V R I DGD V NR PT HK S+
Sbjct: 406 YPGAKYIVRDNGERIDLRFHPKPSDLHLQWGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 465
Query: 363 SVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGN 422
V V T ++N P +ADFDGD ++L PQS+ +AEV L +Q+++ +
Sbjct: 466 RVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQSNK 525
Query: 423 LNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPALSKARCSARWTALQ 478
+ + D L +++ M K+ FL+K + M +P PA+ K + WT Q
Sbjct: 526 PVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMHLPGWNGRMPIPAILKPK--PLWTGKQ 583
Query: 479 ILQSVLPPGFD--------------------SCGD-RYLIKKSEVLKGDFDRDTIPSVIN 517
+ ++P + S GD + +++ ++ G + ++ +
Sbjct: 584 VFSLIIPGEVNMIRTHSTHPDDEDNGPYKWISPGDTKVMVEAGRLVMGILCKSSLGTSAG 643
Query: 518 EIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI---- 573
++ F E G E+ F+ ++Q ++ L +G S+ + D IQK I
Sbjct: 644 SLLHICFLELGHEQCGYFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAK 703
Query: 574 QALYSLLY--HRMS---TQNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLI 620
Q + ++ H M T + EN + + K + + + L ++
Sbjct: 704 QDVIEVIQKAHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 763
Query: 621 DSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIK 680
S S + + Q +G Q + GK + HF + +Y G ++
Sbjct: 764 VSGSKGSNINISQVIACVG-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVE 817
Query: 681 GCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCS 740
+ GL P E H++ RE ++ ++ +E G + + L+ + V++ YDGTVRN
Sbjct: 818 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 877
Query: 741 NSIIQFDYA 749
+IQ Y
Sbjct: 878 Q-LIQLRYG 885
Score = 42.0 bits (97), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQ----------LANPFLGL 50
M N S L Q+ ++FG+ + EI S+++ I L +P G+
Sbjct: 1 MATNDSKAPLR-QVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV 59
Query: 51 PLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
+C++C + +C GHFG+I+L P++H I++
Sbjct: 60 IDRMSRCQTCAGNM-SECPGHFGHIDLAKPVFHIGFITK 97
>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Length = 1460
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 179/706 (25%), Positives = 300/706 (42%), Gaps = 111/706 (15%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLEKGISINNMM 313
Query: 201 VESNDLQLAVGQYLE--------VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFI 252
+ LQL V Y+ + G + V G Q K + R
Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQ----RLKGKQGRFRGNLS 369
Query: 253 RKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL----- 307
K FS R+VI+ D ++E+ VP +A+ +TF E+V +N LQ+L+ N
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHPG 429
Query: 308 --CLTYSDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALS 363
L ++ + +LR G K L+ G VV R + DGD V NR P+ H+ S+ +
Sbjct: 430 ANYLLKNNEDARRNLRYGDRVKLAKNLQFGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNL 423
+ T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G
Sbjct: 490 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 549
Query: 424 NLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSARWTAL 477
+ D + S + K F D+A TQ L+M + L P PA+ K WT
Sbjct: 550 IIAATQDFITGSYLISHKDSFFDRATLTQLLSMMCDANLQFDIPPPAIMKPH--YLWTGK 607
Query: 478 QILQSVLPPGFDSC--------------------------GDRY-LIKKSEVLKGDFDRD 510
Q+ ++ P DS D Y +I+ S++L G D+
Sbjct: 608 QLFSLLIKPNKDSPVVINLDAKNKVYIPPKTKAYPNEMSRNDGYVIIRGSQILSGVMDKS 667
Query: 511 TI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
+ + + +I + GP+E + + L L GFS+ + D + + ++
Sbjct: 668 VLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGISDVTPAD----DL 723
Query: 570 QKEIQALYSLLYHRMSTQNELVD------LQIENHIRHVKMLVAKF-------------- 609
+++ + L + Y + +EL+D L+ + + L AK
Sbjct: 724 KQKKEELVEIAYAKC---DELIDQFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDV 780
Query: 610 ----------ILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
L +T G + + S + VV Q G ++ D F ++L
Sbjct: 781 CINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----P 833
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF++ + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + +
Sbjct: 834 HFQK----NSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRR 888
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPV 765
LM L D+ YD TVR SN I+QF Y + + +PV
Sbjct: 889 LMKSLEDLSCQYDNTVR-TSSNGIVQFTYGGDGLDPMEMEGNAKPV 933
>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
Length = 1398
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 153/566 (27%), Positives = 244/566 (43%), Gaps = 83/566 (14%)
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV---------DNKLC 308
FS+R+VI+ D RV+++GVP E+A+ +T+ E+VN N+ LQ+LV N +
Sbjct: 344 FSARTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAGQKQWPGANYVE 403
Query: 309 LTYSDGSSS-------YSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSL 359
+ D + SL G + LR G VV R + DGD V NR P+ HK S+
Sbjct: 404 IANHDDPGAGDRPPFKKSLLYGDRARIAKELRVGDVVERHMQDGDVVLFNRQPSLHKLSI 463
Query: 360 QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSH 419
+ V V T + N +C P +ADFDGD +++ PQ+ A+AE L +V + +
Sbjct: 464 MSHEVKVMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEASALMNVATNICTPR 523
Query: 420 NGNLNLQLATD-ALLSLKVMFKKYFLDKAFTQQLAMFALSPL-----PRPALSKARCSAR 473
NG + D S V + F D+ LA + L P PA+ K
Sbjct: 524 NGEPLVAATQDFVTASFLVTQRDVFFDRDAFCALAAYVGDALERVDVPPPAILKP--VRL 581
Query: 474 WTALQILQSVLPPGFDS--------------CGDR----------------YLIKKSEVL 503
WT Q+ ++ P + C +R L ++S +L
Sbjct: 582 WTGKQLFSLIVRPTVAAKPENGGAWPCVSFECAERNYTGSGIETMCPMDGYVLFRRSSLL 641
Query: 504 KGDFDRDTIPSVINE-IVTSIFFEKGPEEVLEFFDSLQPLLMENL-FADGFSVSLEDFSL 561
G+ + T+ + +V ++ E GP F + L L L + GFS+ ++D +
Sbjct: 642 CGNIAKKTVGDGSKKGLVYELYREHGPAAAATFMNRLAKLSARYLGYHKGFSIGIDDVTP 701
Query: 562 SKAAL-----------WNIQKEIQ-------ALYSLLYHRMSTQNELVDLQIENHIRHVK 603
S A L +++I+ AL S + EL L + + K
Sbjct: 702 SDAVLALKAQLLEEGHAEARRKIEAYESGSLALQPGCDALQSLEAELTGLLGKVREQAGK 761
Query: 604 MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFER 663
L+ + + +S++ + + S + V Q LG Q D GK V+ HFE
Sbjct: 762 NLMTRDLPRSNSPRIMAECGSKGSAINVSQMIACLGQQAVD-GKRIQNGFVQRTLPHFE- 819
Query: 664 IYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
+ P A+ G + F+ GL E H++ RE +V ++ ++ G + + LM
Sbjct: 820 ---VGELSPGAR-GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAQTGYMARRLMKA 875
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYA 749
L D+ + YDGTVRN N I+QF Y
Sbjct: 876 LEDLSVGYDGTVRNSEKN-IVQFTYG 900
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 175/699 (25%), Positives = 295/699 (42%), Gaps = 84/699 (12%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
E +L+RI +E +KL F + D I++ + V P + ++D S D++
Sbjct: 210 EALAILRRITDEDCEKLGLDPRFARPDWMIVQVVAVSPPHVRPAIMTDSGSRGEDDITFK 269
Query: 175 MLKKVLKQVEIIRSSRSGTPNFESQEVESNDL---QLAVGQYLEVRGTAKSS-RDVDARF 230
+ + + + SG P SQ ES L LA E+ G ++ R+ A
Sbjct: 270 LGDVIKANNHLKQLKESGAP--PSQRRESQMLLQYHLATMYNNELAGQPQAQHRNGKAIK 327
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 290
+ Q K ++R + K FS+R+VITGD +++GVP IA +TF E
Sbjct: 328 SLRQ----RIKGKEGRVRGNLMGKRVDFSARTVITGDPTISCDQVGVPRSIAYNMTFPEI 383
Query: 291 VNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDG 343
V++HNI ++ LV N + SDG + L G +V R++ D
Sbjct: 384 VSIHNIENMRNLVMNGPDQHPGAKSIVRSDGKRVDLRFVKMQSDQILDYGYIVERQMQDD 443
Query: 344 DTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKA 403
D V NR P+ HK S+ V + T ++N + P +ADFDGD ++L PQS K+
Sbjct: 444 DCVIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSYETKS 503
Query: 404 EVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---P 459
E+ + V Q++S + + D LL V+ ++ F++K + M
Sbjct: 504 EIYNIMMVPFQIVSPQKNAPVMGIVQDTLLGCSVLTRRNTFVEKDLMMNVLMHVPGFDGR 563
Query: 460 LPRPALSKA--RCSARWTALQILQSVLPPGF------------DSCGDRY---------- 495
+P PA+ KA WT Q+L +P + GD +
Sbjct: 564 VPIPAIVKAPNNKGPLWTGKQVLSLAIPSRRINLSKLNQYKTDEDTGDVFKQTMTINDAH 623
Query: 496 -LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+I+ E+L G D I + +V + + GP + ++ Q ++ L +G+SV
Sbjct: 624 IVIEDGEILTGSVDSSVIKTSQGGLVHMCWADLGPAGARDLLNNTQIIVNHWLLQNGWSV 683
Query: 555 SLEDFSLSKAALWNI-------QKEIQALY------SLLYHRMSTQNELVDLQIENHIRH 601
+ D S + I +K++Q SL T +++ ++Q+ + + +
Sbjct: 684 GVSDIVASAETIKAIGASIDAAKKDVQGFVEQWQQGSLKKQPGCTMHQVFEMQVNSRLNN 743
Query: 602 -------VKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYS 650
+ KF L + + + S S + Q +G Q + + F
Sbjct: 744 ALSDGSNIVQRGIKFAL--NRINEMRKSGSKGTDINLCQIIALVGQQNIENCRIPYGFKR 801
Query: 651 KTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 710
+TL HF + P G ++ + GL P E H++ RE ++ ++
Sbjct: 802 RTL-----PHFRKDDP-----GAESRGFVENSYTQGLTPQELYFHAMGGREGLIDTAVKT 851
Query: 711 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
SE G + + L+ L DVV+ YDGTVRN S+IQF Y
Sbjct: 852 SETGYIQRRLIKALEDVVVRYDGTVRNSLG-SVIQFAYG 889
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 158/646 (24%), Positives = 281/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI L++LV N + + Y +RE ++ LR G
Sbjct: 301 TYPETVTRFNIERLKQLVTNGPQM---HPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREEVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKSSQPPLERFAPAGDS 528
Query: 495 Y-LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
+ +++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GPFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E H+++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFHAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L ++ + YD TVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEITVKYDTTVRDSRGN-ILQFIYG 794
>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
Length = 1004
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 140/559 (25%), Positives = 242/559 (43%), Gaps = 77/559 (13%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L +LV N
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 330
Query: 306 K------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
D LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 331 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 390
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ V V T ++N + P +ADFDGD ++L PQS ++AE+ L V ++S
Sbjct: 391 MMGHRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCMVPLNIVSP 450
Query: 419 HNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL---SPLPRPALSKARCSARW 474
+ + + D L + K+ + FL K + ++ +P+PA+ K + RW
Sbjct: 451 QRNSPLMGIIQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPQPAIIKP--TPRW 508
Query: 475 TALQILQSVLPPG-------------FDSCGDRYLIK-KSEVLKGDFDRDTIPSVINEIV 520
T Q++ VLPP F D LI + V+ G + + + I+
Sbjct: 509 TGKQMISMVLPPALNLERLDAKGEDPFTPVNDTGLIVLEGNVMFGLLSKKYVGTSAGGII 568
Query: 521 TSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI------- 573
+I+ E G E L FF+ Q ++ L +GFS+ + D + IQ +
Sbjct: 569 HTIYNELGWETALAFFNGAQTVVNYWLLHNGFSIGIGDTVPDPETVQKIQDAVDTKKAEV 628
Query: 574 ---------------------QALYSLLYHRMSTQNELVDLQIENHIRHVK--MLVAKFI 610
Q S + + ++ + E+ ++ + + +A+
Sbjct: 629 DAISKLAQGMRLEASPGMNIRQTFESKVMNSLNQARDQAGAATEDSLKDLNNAITMARAG 688
Query: 611 LKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLN 670
K ST+ + ++ +V Q G ++ K+ S HF + +
Sbjct: 689 SKGSTINI-------AQMTAIVGQQAVEGKRIPFGFKYRS-------LPHFTKD-----D 729
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L +V +
Sbjct: 730 YSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVK 789
Query: 731 YDGTVRNVCSNSIIQFDYA 749
YD TVR+ N ++QF Y
Sbjct: 790 YDSTVRDSRGN-VVQFIYG 807
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 184/737 (24%), Positives = 308/737 (41%), Gaps = 65/737 (8%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEML 121
T E + +GH G Y P I L + A D ++++ + V E+
Sbjct: 83 TQEGDQKKGHGGCGR-----YQPK-IKRTGLELIAEWKDTNEDSQEKKIVLTADRVHEIF 136
Query: 122 KRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL 180
KRI ++ + L Y D I+ +PVPP + + G + DL+ + +
Sbjct: 137 KRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIK 196
Query: 181 KQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT 240
++ R+ ++G + + S D+++ QY T + S P +
Sbjct: 197 ANNQLRRNEQNGA----ASHIISEDMKML--QYHVATFTDNELPGLPKAVQKSGRPLKSV 250
Query: 241 KAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 296
K L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI
Sbjct: 251 KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNI 310
Query: 297 NYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFIN 349
+ +QELV D LR K L+ G V R + D D + N
Sbjct: 311 DRMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFN 370
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT HK S+ V V T ++N + P +ADFDGD ++L PQSL KAE+ L
Sbjct: 371 RQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLA 430
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFAL---SPLPRPAL 465
V + +++ + + D L +++ M K+ FLD+ L MF +P+PA+
Sbjct: 431 LVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAI 490
Query: 466 SKARCSARWTALQILQSVLPPGFDSC---------------------GD-RYLIKKSEVL 503
K + WT Q+ V+ PG +C GD + LI+ ++
Sbjct: 491 LKPK--PLWTGKQLFSLVI-PGRTNCIRTHSTHPDEEDKGPYKWISPGDTKVLIEDGMLI 547
Query: 504 KGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
G + T+ + + +F E G E + +Q L+ L +G S+ + D
Sbjct: 548 SGILCKKTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNNWLLLEGHSIGIGDTIADP 607
Query: 564 AALWNIQKEI-QALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFIL---KSSTLGYL 619
+IQ I +A + ++ N+ ++ N +R + IL + T
Sbjct: 608 QTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPTPGNTLRQTFENMVNRILNDARDKTGSKA 667
Query: 620 IDSKSDSAVSKVVQQAGFLG--LQLSDRGKFYSKTLVEDIASHF---ERIYP--MDLNYP 672
S SD K + AG G + +S + VE F R P + +Y
Sbjct: 668 QKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYG 727
Query: 673 TAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD 732
G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ YD
Sbjct: 728 PESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYD 787
Query: 733 GTVRNVCSNSIIQFDYA 749
GTVRN ++Q Y
Sbjct: 788 GTVRNQVE-QLVQLRYG 803
>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1453
Score = 162 bits (411), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 192/772 (24%), Positives = 325/772 (42%), Gaps = 103/772 (13%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
YI YLP PP C+ P + + DL++ L +++ +I++ + + +
Sbjct: 255 YIWRYLPAPPVCIR-PSVMMDAQSNEDDLTVK-LTEIVWTSSLIKAGIDKGISINNLMEQ 312
Query: 203 SNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----F 258
+ LQL+V Y+ + S P L+ + F SG F
Sbjct: 313 WDYLQLSVAMYINSDAANPALMPSAGSGSKSTKPIRGFCQRLKGKQGRFRGNLSGKRVDF 372
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV----DNKLCLTY--- 311
S R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+L+ D Y
Sbjct: 373 SGRTVISPDPNLKIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLILSGPDVHPGANYVLK 432
Query: 312 SDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDD 369
+ ++ +LR G + L G VV R I DGD V NR P+ H+ S+ + +
Sbjct: 433 QNENTKRNLRFGDRVKIAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPW 492
Query: 370 HTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLAT 429
T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G +
Sbjct: 493 RTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQ 552
Query: 430 DALL-SLKVMFKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQSV 483
D + S + K F ++A QL LP PA+ K + WT Q+ +
Sbjct: 553 DFITGSYLITHKDSFFERASVNQLLCMMSDANLQFDLPPPAIIKP--VSLWTGKQVFSLL 610
Query: 484 LPP--------GFDSCGDRY------------------LIKKSEVLKGDFDRDTI-PSVI 516
+ P D+ Y +I+ S++L G D+ T+
Sbjct: 611 IKPNKASNVVINLDAKAKTYIPPERHFANEMSPNDGYVIIRGSQILSGVMDKSTLGDGKK 670
Query: 517 NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQAL 576
+ + +I + GP E E + + L L GFS+ + D + + L N +KE+
Sbjct: 671 HSVFYTILRDYGPTEAAEAMNRMSKLCARYLGNRGFSIGINDVT-PGSDLKN-KKELMVE 728
Query: 577 YSL--------LYHR--MSTQ-----NELVDLQIENHIRHVKMLVAKFILKS-------- 613
+ LY+R + TQ + ++ +I + V+ V + +K
Sbjct: 729 QAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIKELDSLNAPL 788
Query: 614 --STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNY 671
+T G + + S + VV Q G ++ D F ++L HF + +
Sbjct: 789 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD--GFQDRSL-----PHFTK----NSKT 837
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+ Y
Sbjct: 838 PQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 896
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMS-NPAYKAVLDSSPSSNN 790
D TVRN SN I+QF Y + + PV + S N + SN
Sbjct: 897 DNTVRN-SSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHSFNITF---------SNR 946
Query: 791 SWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
L+ ++ V P++ R+I Y N G + R Y+ +N +R
Sbjct: 947 EMGLLPYQVMEEVEKVLQPLEDRLIRYDN---LGHQIISNREEYIDQNDAER 995
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 167/711 (23%), Positives = 291/711 (40%), Gaps = 83/711 (11%)
Query: 100 QIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVP 158
+ D ++++ + E+LK I +E L F + D I+ LPVPP +
Sbjct: 197 HVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPA 256
Query: 159 DISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP-----------NFESQEVESNDLQ 207
+ G + DL+ + + E++R+ ++G F + ND+
Sbjct: 257 VVMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISENIKMLQFHVATLVDNDMP 316
Query: 208 LAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGD 267
G ++ + K + + AR K ++R + K FS+R+VIT D
Sbjct: 317 ---GMPRAMQKSGKPLKAIKARL----------KGKEGRIRGNLMGKRVDFSARTVITPD 363
Query: 268 AYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLR 321
R++++GVP IAQ +TF E V NI+ +QELV D LR
Sbjct: 364 PNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERIDLR 423
Query: 322 EGSKGHTF-LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICG 380
K L+ G V R I DGD V NR PT HK S+ V V T ++N
Sbjct: 424 FHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 483
Query: 381 PLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFK 440
P +ADFDGD ++L PQS+ +AEV + +Q+++ + + D L +++ M K
Sbjct: 484 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTK 543
Query: 441 K-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD------- 489
+ F++K + M S +P+P + K + WT QI ++P +
Sbjct: 544 RDVFIEKEQMMNILMHLPSWDGKMPQPCILKPK--PLWTGKQIFSLIIPGNVNMIRTHST 601
Query: 490 -------------SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 535
S GD + +++ E++ G + T+ + ++ E G + F
Sbjct: 602 HPDEEDDGQYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRF 661
Query: 536 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLY------HRMS---T 586
+ ++Q ++ L +G S+ + D IQK I+ + H M T
Sbjct: 662 YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT 721
Query: 587 QNELVDLQIENHIRHV--------KMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFL 638
+ EN + + K + + + L ++ S S + + Q +
Sbjct: 722 PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 781
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q + GK + HF + +Y G ++ + GL P E H++
Sbjct: 782 G-QQNVEGKRIPFGFRKRTLPHF-----IKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 835
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE ++ ++ +E G + + L+ + V++ YDGTVRN +IQ Y
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQ-LIQLRYG 885
>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
Length = 999
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 159/646 (24%), Positives = 281/646 (43%), Gaps = 104/646 (16%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDAR 229
DL+ + + +IR + G P+ ++E+++ LQ V Y++ ++D
Sbjct: 187 DLTFKLGDIIRANQNLIRINAEGAPDHIAKELQAL-LQYHVATYMD-----NDIANLDKA 240
Query: 230 FGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+ +
Sbjct: 241 QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 300
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSK----------GHTFLRPGQV 335
T+ E V NI+ L+ELV + + Y +RE ++ L+ G
Sbjct: 301 TYPETVTRFNISRLKELVTRGPEM---HPGARYIIRENNERIDLRYHKDPAGIALKVGWK 357
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
V R IMDGD + NR P + V V T ++N + P +ADFDGD ++L
Sbjct: 358 VERHIMDGDVILFNRQPXXXR-------VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAM 454
PQS ++AE+ +L V ++S + + D L + K+ + FL + + +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIML 470
Query: 455 FAL---SPLPRPALSKARCSARWTALQILQSVLPPG-----------------FDSCGDR 494
+ +P+PA+ K R RWT QI+ VLPP F GD
Sbjct: 471 WVPDWDGVIPQPAIFKPR--PRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGDS 528
Query: 495 YL-IKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 553
L + E++ G F++ ++ + N I+ +IF E G E + FF+ Q ++ L +GFS
Sbjct: 529 GLFVADGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFS 588
Query: 554 VSLEDFSLSKAALWNIQKEI----------------------------QALYSLLYHRMS 585
+ + D + I+ E+ + S + ++
Sbjct: 589 IGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 648
Query: 586 TQNELVDLQIENHIRHVK--MLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLS 643
+ EN ++ + + +A+ K ST+ S ++ +V Q G ++
Sbjct: 649 GARDEAGTATENSLKDINNAIQMARAGSKGSTINI-------SQMTAIVGQQSVEGKRIP 701
Query: 644 DRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F +TL HF + +Y A G ++ + GL P E +++ RE +
Sbjct: 702 --FGFKYRTL-----PHFAKD-----DYSAASKGFVENSYLRGLTPTEFFFRAMAGREGL 749
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ ++ +E G + + L+ L +V + YD TVR+ N I+QF Y
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYG 794
>gi|354609473|ref|ZP_09027429.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
gi|353194293|gb|EHB59795.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
Length = 964
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 166/651 (25%), Positives = 284/651 (43%), Gaps = 68/651 (10%)
Query: 144 ILEYLPVPPNCLSVPDIS-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
IL LPVPP + P I+ D DL+ ++ + + + +G P +++
Sbjct: 274 ILTVLPVPP-VTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLW 332
Query: 203 SNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
LQ V ++ E+ GT + S P T L+ F SG
Sbjct: 333 EL-LQYHVTTFMDNEISGTPPARH-------RSGRPLKTLSQRLKGKEGRFRGSLSGKRV 384
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL-------CL 309
FS+R+VI+ D +NE+GVP +A +T VN N+ + V N +
Sbjct: 385 NFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNDQNLERAKRYVRNGPEGHPGANYV 444
Query: 310 TYSDGSS-SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
T DG + + + + PG V R ++DGD + NR P+ H+ S+ A V V
Sbjct: 445 TRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMP 504
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T ++N ++C P +ADFDGD +++ Q+ A+AE L V++Q+LS G +
Sbjct: 505 YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAI 564
Query: 429 TDALLS--LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVLPP 486
D + L F + + L + LP PA ++ W QI +LP
Sbjct: 565 QDHISGTYLLTHTNPRFNETQASDLLRGTRIDELPEPAGTED-GQPYWEGRQIFSELLPD 623
Query: 487 GFD-----SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQP 541
+ + G+ +I+ +++G D + EIV +I G F + +
Sbjct: 624 DLNLDFLGTVGEPVVIEDGYLVEGTIAEDEVGGFGGEIVDTIAKVHGKTRARIFINEVAS 683
Query: 542 LLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMST--QNELVDLQIENHI 599
L M ++ GFS+ ++D ++S++A I + I++ Y + + T +L L
Sbjct: 684 LAMRSIMHFGFSIGIDDETVSESARERIDEAIESAYDRVQELIETYENGDLESLPGRTVD 743
Query: 600 RHVKMLVAKFILKSSTLGYLIDSKSDSA---------------------VSKVVQQAGFL 638
++M + + TLG DS D A + + Q AG +
Sbjct: 744 ETLEMKIMQ------TLGKARDSAGDVAEENFAQDNPAVVMANSGARGSMLNLTQMAGCV 797
Query: 639 GLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSIS 698
G Q RG+ ++ + SHF P DL+ +A +G ++ + GL P E H++
Sbjct: 798 GQQAV-RGERINRGYEDRTLSHF---APNDLS--SAAHGFVENSYTSGLTPREFFFHAMG 851
Query: 699 TREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
RE +V ++ S+ G L + L+ L ++ YDGTVR+ S++I+QF++
Sbjct: 852 GREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 901
>gi|341858934|gb|AEK97377.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
gi|341858936|gb|AEK97378.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 953
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 279/643 (43%), Gaps = 79/643 (12%)
Query: 162 DGVSTMS---SDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL---- 214
DG T + DL+ + + + ++ R G+P +++ E LQ V Y+
Sbjct: 167 DGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEEL-LQYHVATYMDNDI 225
Query: 215 --EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRV 272
+ R KS R V A + K ++R + K FS+R+VITGDA +
Sbjct: 226 AGQPRALQKSGRPVKA-------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSL 278
Query: 273 NEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSK 325
+E+GVP IA+ +T+ E V +NI L +LV+N + SDG+
Sbjct: 279 HEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRA 338
Query: 326 GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD 385
L G V R + V V T ++N + P +AD
Sbjct: 339 AQISLEYGWKVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNAD 398
Query: 386 FDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFL 444
FDGD ++L PQ+ +AE+ EL V ++S + + D+L + K+ + F+
Sbjct: 399 FDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFI 458
Query: 445 DKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFD--SCGDR----- 494
DK Q L ++ + +P+PA+ K R RWT QI+ V+PP S D
Sbjct: 459 DKELVQNLMLWVPNWDGVIPQPAILKPR--PRWTGKQIISMVIPPEISLYSKEDELDNPR 516
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G + ++ + I+ + E GPE + F + +Q ++ L
Sbjct: 517 HDAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNT 576
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQ---NEL-------VDLQIENHIR 600
GFS+ + D KA + IQ+ I + R++ Q NEL V EN +
Sbjct: 577 GFSIGIGDTVPDKATINKIQEHIDE-HKAEVARLTAQATANELEALPGMNVRATFENKV- 634
Query: 601 HVKMLVAKFILKSSTLGYL---------IDSKSDSAVSKVVQQAGFLGLQLSDRGK---- 647
+ + +A+ +ST+ L DS S + + Q +G Q+ + GK
Sbjct: 635 SMALNMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVE-GKRIPF 693
Query: 648 -FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRS 706
F +TL HF + D P A+ G ++ + GL P E H+++ RE ++ +
Sbjct: 694 GFKYRTL-----PHFTK----DDYSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDT 743
Query: 707 SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
+ +E G + + L+ L D+ YDGTVRN + +IQF Y
Sbjct: 744 AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYG 785
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 155/630 (24%), Positives = 275/630 (43%), Gaps = 69/630 (10%)
Query: 170 DLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVD 227
DL+ + + ++R+ GTP+ ++ + LQ + Y+ E+ G ++
Sbjct: 270 DLTFKLGDIIRANQAVLRTEVDGTPDHIKVDL-CDLLQYHIATYMDNEIAGLERAQHK-- 326
Query: 228 ARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
S P + +A L+ ++R + K FS+R+VITGD ++E+GVP IA+
Sbjct: 327 -----SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAR 381
Query: 284 RITFEERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSKGHTF-LRPGQVV 336
+T+ E V N++ L+ LV N D LR + L+ G V
Sbjct: 382 TLTYPETVTPFNLDKLKRLVANGPTEHPGARYVIRDTGERIDLRHHKRASEMTLQYGWKV 441
Query: 337 HRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYP 396
R I DGD + NR P+ HK S+ V V T ++N + P +ADFDGD ++L P
Sbjct: 442 ERHIQDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 501
Query: 397 QSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMF 455
QS ++AE+ L V ++S + + D L + K+ + FL + + ++
Sbjct: 502 QSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTREQVMNIMLW 561
Query: 456 AL---SPLPRPALSKARCSARWTALQILQSVLPPG-----FDSCG-DRY--------LIK 498
+P+PA+ K R RWT Q++ VLP D+ G D Y ++
Sbjct: 562 VPEWDGVIPQPAIIKPR--PRWTGKQMISMVLPRALNLERLDAKGEDPYVPANDTGLMVL 619
Query: 499 KSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
+ ++ G F + + + ++ +IF E G E + FF+ Q ++ L +GFS+ + D
Sbjct: 620 EGHLMFGLFSKKFVGTSAGGVIHTIFNEFGHEAAMAFFNGAQHVVNYWLLHNGFSIGIGD 679
Query: 559 FSLSKAALWNIQ-------KEIQALYSLLYH-----------RMSTQNELVDLQIENHIR 600
+ IQ KE++ + Y R + ++++++ N R
Sbjct: 680 TVPDPETVRKIQEVVDEKKKEVEEITIRAYKEDLEPSPGMNVRQTFESKVMNAL--NQAR 737
Query: 601 HVKMLVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIAS 659
V + LK + + + S + + Q +G Q + GK
Sbjct: 738 DQAGAVTENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVE-GKRIPFGFKYRTLP 796
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 797 HFAKD-----DYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 851
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L +V + YD TVR+ N I+QF Y
Sbjct: 852 LVKALEEVTVKYDSTVRDSRGN-IVQFIYG 880
>gi|407039913|gb|EKE39890.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
nuttalli P19]
Length = 1635
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 158/680 (23%), Positives = 296/680 (43%), Gaps = 100/680 (14%)
Query: 136 GYFPQDGY----ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
G+ P D + I +PVPP C+ +S+G DL++ + + V+ E ++
Sbjct: 221 GFDPIDCHPKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTV-LYENVITANERLKEENQ 279
Query: 192 ---GTPNFESQEVESNDLQLAVG----QYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWL 244
G + ++ +E + + + E K+ + ++ R Q
Sbjct: 280 KCEGVSEYYNKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQG--------- 330
Query: 245 EKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVD 304
++R + K FS+R+VI+ D ++E+GVP +A+ +TF E V HN LQ+LV+
Sbjct: 331 -RLRLNLMGKRVDFSARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVN 389
Query: 305 NKLCLTYSDGSSSYSLREGSKGHTF--------LRPGQVVHRRIMDGDTVFINRPPTTHK 356
+ +D ++ L E G T+ + G VHR IM+GD V NR P+ H+
Sbjct: 390 AGM----NDYPGAFML-ERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHR 444
Query: 357 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 416
S+ V V T ++N P +ADFDGD ++L PQ+L A+AEV L Q++
Sbjct: 445 MSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQII 504
Query: 417 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL--------SPLPRPALSKA 468
+ + + + D ++ K+ + F +QL + + +P PA+ K
Sbjct: 505 TPQDNGPIMGIVQDTQCGSYLITKR----ETFIEQLVFYNILQCLDNFDGTVPIPAILKP 560
Query: 469 RCSARWTALQILQSVLP------------------PGFDSCGDRYLIKKSEVLKGDFDRD 510
+WT Q+ +LP P + D Y++ ++ ++
Sbjct: 561 --IPKWTGKQVFTQILPTINFHRGNWSIKELLKRGPAV-ADSDVYILDGVHLVGSLRNKS 617
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDF----SLSKAAL 566
+ I+ +IF +KG E FF+ Q + + GF+V + D S+ +
Sbjct: 618 EFGKNRSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIR 677
Query: 567 WNIQKEIQALYSLLYHRM---------STQNELVDLQIENHIRHVK----MLVAKFILKS 613
N++K + L H+ +T E ++ ++ + + +K + K + K
Sbjct: 678 ANVEKSKKEAVKFLSHQHDDEIKVQAGNTMFENLESELGSLLEKLKNECDSITTKSLKKD 737
Query: 614 STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIASHFERIYPMDL 669
+ L ++DS S + + ++Q F+G Q + + FY +TL H+ +
Sbjct: 738 NNLLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRTL-----PHYWK-----E 787
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H+++ R+ I+ ++ S+ G + + ++ + DV
Sbjct: 788 DYGFVSRGFVENSYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQC 847
Query: 730 CYDGTVRNVCSNSIIQFDYA 749
YD TVR S +++F Y
Sbjct: 848 KYDRTVRR-SSGDMVEFMYG 866
>gi|336091018|gb|AEI00186.1| RNA polymerase II largest subunit [Capronia peltigerae]
Length = 973
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 173/690 (25%), Positives = 289/690 (41%), Gaps = 97/690 (14%)
Query: 119 EMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVST---MSSDLSIA 174
++L+ + +ET + K Y + +IL+ LPVPP + P +S T DL+
Sbjct: 130 QILQLLTDETITMMGLNKDYARPEWFILQSLPVPPPAVR-PSVSQDGGTGPRNEDDLTYK 188
Query: 175 MLKKVLKQVEIIRSSRSGTP-NFESQEVESNDLQLAVGQYLEV------RGTAKSSRDVD 227
+ V + R GTP + ++Q V+ L+ + Y++ R KS R +
Sbjct: 189 LADIVRANQSVTRCEVDGTPEHIKNQLVDL--LEYHINTYMDNEIAGLDRAQHKSGRPIK 246
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
A + K ++R + K FS+R+VITGD ++E+GVP IA+ +TF
Sbjct: 247 A-------IRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTF 299
Query: 288 EERVNVHNINYLQELVDNKLC------LTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI L+ V N LR K G L+ G V R I
Sbjct: 300 PETVTNFNIERLKRCVANGPTEWPGARYAIRGSGDRIDLRHAKKSGDINLQYGWKVERHI 359
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
+DGD + NR P+ ++N + P +ADFDGD ++L PQS
Sbjct: 360 VDGDIILFNRQPSLXX--------------XFRLNLSVTSPYNADFDGDEMNLHVPQSQE 405
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFAL-- 457
A+AE+L+L V + ++S + + D L + K+ + FL K + ++
Sbjct: 406 ARAELLQLCMVPRNIVSPQKNAPLMGIVQDTLCGVYKLTRRDVFLTKEQVMNIMLWVPEW 465
Query: 458 -SPLPRPALSKARCSARWTALQILQSVLPPG---------------FDSCGDRYLIKKSE 501
+P+PAL K + RWT QI VLP F +++ E
Sbjct: 466 DGVIPQPALLKP--TPRWTGKQIFSMVLPSNLNLQRKEDKTELEHWFHPSDASLIVQGGE 523
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL 561
V+ G + + + ++ +IF E G + + FF+ Q ++ L GFS+ + D
Sbjct: 524 VMMGQMHKKHVGTGAGGVIHTIFNENGHDAAMAFFNGAQVVVNYWLLHYGFSIGIGDTVP 583
Query: 562 SKAALWNIQKEIQALYSLL-----------------YHRMSTQNELVDLQIENHIRHVKM 604
+ IQ + +L+ + T V +++ N R V
Sbjct: 584 DVDTVGKIQDVVDTQKALVDKITAKAYANKLEPAPGMNVRQTFESKVMMEL-NKARDVAG 642
Query: 605 LVAKFILKS-STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGK----FYSKTLVEDIAS 659
A+ LK + L + S S + + Q +G Q + + F +TL
Sbjct: 643 DSAQQSLKDLNNLTQMARSGSKGSGINIAQVMALVGQQAVEGKRIPFGFNYRTL-----P 697
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HF + +Y G I+ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 698 HFSKD-----DYSATSRGFIENSYXRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 752
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYA 749
L+ L +V + YDGTVR+ N ++QF Y
Sbjct: 753 LVKALEEVSVKYDGTVRDSRGN-VMQFVYG 781
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,135,520,994
Number of Sequences: 23463169
Number of extensions: 809158559
Number of successful extensions: 1928033
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10805
Number of HSP's successfully gapped in prelim test: 601
Number of HSP's that attempted gapping in prelim test: 1896116
Number of HSP's gapped (non-prelim): 23566
length of query: 1238
length of database: 8,064,228,071
effective HSP length: 155
effective length of query: 1083
effective length of database: 8,722,404,172
effective search space: 9446363718276
effective search space used: 9446363718276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)