RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000882
(1238 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 272 bits (697), Expect = 2e-75
Identities = 190/860 (22%), Positives = 348/860 (40%), Gaps = 66/860 (7%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQ-DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIA 174
E+ + K I + L F + + IL LPVPP + + DL+
Sbjct: 205 EILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTF- 263
Query: 175 MLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 233
L +LK + + +G P+ +E ES LQ V Y+ A + +
Sbjct: 264 KLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYM-DNDIAGQPQALQKSGRPV 321
Query: 234 QDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNV 293
+ + K ++R + K FS+R+VI+GD ++++GVP IA+ +T+ E V
Sbjct: 322 KSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTP 381
Query: 294 HNINYLQELVDN------KLCLTYSDGSSSYSLRE-GSKGHTFLRPGQVVHRRIMDGDTV 346
+NI+ L +LV N D LR G L+ G V R IMD D V
Sbjct: 382 YNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPV 441
Query: 347 FINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
NR P+ HK S+ A V V T ++N + P +ADFDGD ++L PQS +AE+
Sbjct: 442 LFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELS 501
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLAMFALS---PLPR 462
+L +V Q++S + + + D L ++ + + F++ + + +P
Sbjct: 502 QLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPT 561
Query: 463 PALSKARCSARWTALQILQSVLPPG------------FDSCGDRYLIKKSEVLKGDFDRD 510
PA + W+ QIL +P G + LI +++ G ++
Sbjct: 562 PA--IIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKK 619
Query: 511 TIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAAL---- 566
T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D +
Sbjct: 620 TVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREIT 679
Query: 567 ----------WNIQKEIQALYSLLYHRMSTQNELVD--LQIENHIRHVKMLVAKFILKSS 614
++ KE QA H M+ + D ++ N R +A+ LK
Sbjct: 680 ETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDL 739
Query: 615 TLGY-LIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPT 673
++ + S + + Q + +G Q S GK + V+ HF + +Y
Sbjct: 740 NNVKQMVMAGSKGSFINIAQMSACVGQQ-SVEGKRIAFGFVDRTLPHFSKD-----DYSP 793
Query: 674 AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 733
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L D+++ YD
Sbjct: 794 ESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDN 853
Query: 734 TVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWE 793
T RN ++IQF Y + + + + A +L++ + + S
Sbjct: 854 TTRNSL-GNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLL 912
Query: 794 LMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFL 853
+L + +D + D R+ + A R +++A F
Sbjct: 913 ESGSEILGDLK-LQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFH 971
Query: 854 IEYKKPEIISDDEGLVGHIHLNKILLEDLRI--SMHDILPKCQETLKSFCKKKKM----- 906
I++ KP ++ + ++G K L E+L + ++I+ Q +
Sbjct: 972 IDHTKPSDLTIKDIVLG----VKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLAT 1027
Query: 907 KKVVQFFKNTSLSISECCSF 926
++V+Q ++ T + S
Sbjct: 1028 RRVLQEYRLTKQAFDWVLSN 1047
Score = 67.2 bits (163), Expect = 1e-11
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 14 IVGIRFGLATQKEICTASISDCSISHASQ------------LANPFLGLPLEFGKCESCG 61
+ ++FGL + +E+ +IS I L +P LG KC++C
Sbjct: 13 VKEVQFGLFSPEEVR--AISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQ 70
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+I+L P++H I+++K
Sbjct: 71 E-GMNECPGHFGHIDLAKPVFHVGFIAKIK 99
Score = 43.3 bits (101), Expect = 2e-04
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEK-------AAE 1049
H+ LL + MT G L G+ + + FE+ A
Sbjct: 1366 HMALLVDVMTTQGGLTSVTRHGFNRSNTG-----ALMRCS-------FEETVEILFEAGA 1413
Query: 1050 KRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTEN 1085
D+ V G+ +GTG+ FD++ E+
Sbjct: 1414 SAELDDCRGVSENVILGQMAPIGTGA-FDVMIDEES 1448
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 223 bits (568), Expect = 1e-59
Identities = 118/693 (17%), Positives = 212/693 (30%), Gaps = 107/693 (15%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDG-----YILEYLPVPPNCLSVPDISDGVSTMSSD 170
E+K + + RK+L F G ILE +PV P L DG +SD
Sbjct: 479 EMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSD 538
Query: 171 LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRGTAKSSRDVDA 228
L+ + + + + + G P + E LQ AV L RG ++
Sbjct: 539 LNDLYRRLINRNNRLKKLLAQGAPEIIIRN-EKRMLQEAVDALLDNGRRGAPVTNP---- 593
Query: 229 RFGVSQDPNSTTKAWLEK---MRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRI 285
G + S T K R + K +S RSVI ++++ G+P +A +
Sbjct: 594 --GSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALEL 651
Query: 286 TFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDT 345
+ + V + + + ++ G
Sbjct: 652 FKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWD-------------ALEEVIHGKV 698
Query: 346 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 405
V +NR PT H+ +QA + + +++++PL+C +ADFDGD + + P S A+AE
Sbjct: 699 VLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEA 758
Query: 406 LELFSVEKQLLSSHNGNLNLQLATDALLSLKVM--FKKYFLDKAFTQQLAMFALSPLPR- 462
LLS +G + + D +L L + +K AL+ R
Sbjct: 759 RIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERG 818
Query: 463 ----PALSKARCSARWTALQILQSVLPPG-----------------FDSCGDRYLIKKSE 501
A K P G R
Sbjct: 819 EVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGR 878
Query: 502 VLKG-----------------DFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
+L D + + ++V F G E+ D+L+
Sbjct: 879 ILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGF 938
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQ--KEIQALYSLLYHRMSTQNELVDLQIENHIRHV 602
G ++ ++D + + ++ Y + QI
Sbjct: 939 TFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTET 998
Query: 603 KMLVAKFILKS-------STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 655
V + + K+ + L + S + ++ Q G GL G+ +
Sbjct: 999 TEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFE----- 1053
Query: 656 DIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGT 715
++ F GL E S R+ ++ ++ G
Sbjct: 1054 ---------------------VPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGY 1092
Query: 716 LFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
L + L+ V ++V+ S+ F
Sbjct: 1093 LTRKLVDVTHEIVVREADCGT-TNYISVPLFQP 1124
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 28.3 bits (63), Expect = 2.6
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 28/122 (22%)
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRD----------------VDARFGVSQDP-NSTTK- 241
E+E ++ + G L++ G+ D + RF S NS
Sbjct: 1 ELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSESTIVCNSLDGS 60
Query: 242 AWL--EKMRTLFIRKGSGFSSRSVITGDAYK-RVNEIGVPFEIAQRITFEERVNVHNINY 298
W ++ L GS D +K ++ +TF R+ +++Y
Sbjct: 61 NWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLP--DGHE-----LTFPNRLGHSHLSY 113
Query: 299 LQ 300
L
Sbjct: 114 LS 115
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 28.3 bits (63), Expect = 2.9
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 35/132 (26%)
Query: 206 LQLAVGQYLEVRGTAKSSRDVDARF------GVSQDP----------------NSTTKAW 243
L+ G + ++G + + ++ NS
Sbjct: 11 ASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEMKEESDIVFHFQVCFGRRVVMNSREYGA 70
Query: 244 L---EKMRTLFIRKGSGFSSRSVITGDAYK-RVNEIGVPFEIAQRITFEERVNVHNINYL 299
+ + + + G F + D Y+ VN G TF+ R+ + +
Sbjct: 71 WKQQVESKNMPFQDGQEFELSISVLPDKYQVMVN--GQSS-----YTFDHRIKPEAVKMV 123
Query: 300 QELVDNKLCLTY 311
Q V + LT
Sbjct: 124 Q--VWRDISLTK 133
>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 28.3 bits (62), Expect = 5.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 118 KEMLKRIPEETRKKLAGKGYFPQD 141
+ RK++ G FP D
Sbjct: 270 VAQSEAFDRAYRKQMRGMPTFPWD 293
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 53
Score = 25.8 bits (57), Expect = 5.4
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRIPEETR 129
+ DG SS CE L R
Sbjct: 19 VHKDGATTHFCSSKCENNADLGREARNLE 47
>d2gria1 d.15.14.1 (A:1-112) Nsp3 {SARS coronavirus [TaxId: 227859]}
Length = 112
Score = 27.1 bits (60), Expect = 6.0
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 22/103 (21%)
Query: 1075 SRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSP 1134
R D + + + + G +V +F +V + + + L P
Sbjct: 30 ERVDKVLNEKCSVYTVESGTEVTEFACVVAEA--VVKT-------------------LQP 68
Query: 1135 EHNLCSDKPVF-EDLVEDQSWLENKQENANWDSEADCRKSSED 1176
+L ++ + ++ +L + N+ S C D
Sbjct: 69 VSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPD 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,592,001
Number of extensions: 220194
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 13
Length of query: 1238
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1142
Effective length of database: 1,089,516
Effective search space: 1244227272
Effective search space used: 1244227272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)