BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000884
(1237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 196/366 (53%), Gaps = 20/366 (5%)
Query: 869 TKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEI-DMSELENLFSATIPNSEKGGKP 926
T LK +W KL ++G++W E + +K +I D+ +LE FSA +
Sbjct: 14 TNALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNS 69
Query: 927 NQRVPRGPQSD----------KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLAL-EDSA 975
N + D ++ +ID RRA NC I+LS++K+ E+ R++L + E
Sbjct: 70 NSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED 129
Query: 976 IDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQ 1035
+ D +E L+KF P K ++DLL+ + + +++ K ++F E+ ++ + +L+ FK +
Sbjct: 130 LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKK 189
Query: 1036 FHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095
F +V++++ + + S +E+V S L+++++ +L+ GN +N+G RG A GF++ SL
Sbjct: 190 FAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLN 248
Query: 1096 KLTDTRARNNK-MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSK 1154
K+ DT++ +K +TL+HYL ++ +K P +L+ +E+L + A+K+ + L +E+ L
Sbjct: 249 KIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRS 308
Query: 1155 GLEKVVQELSMSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213
GL+ V EL ++ + F ++ +F+ A + L + + +FG
Sbjct: 309 GLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 368
Query: 1214 EDPARC 1219
E+ +
Sbjct: 369 EEAGKI 374
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 196/366 (53%), Gaps = 20/366 (5%)
Query: 869 TKKLKPLHWLKL-TRAVQGSLWAEAQKSGEASKAPEI-DMSELENLFSATIPNSEKGGKP 926
T LK +W KL ++G++W E + +K +I D+ +LE FSA +
Sbjct: 12 TNALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNS 67
Query: 927 NQRVPRGPQSD----------KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLAL-EDSA 975
N + D ++ +ID RRA NC I+LS++K+ E+ R++L + E
Sbjct: 68 NSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED 127
Query: 976 IDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQ 1035
+ D +E L+KF P K ++DLL+ + + +++ K ++F E+ ++ + +L+ FK +
Sbjct: 128 LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKK 187
Query: 1036 FHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095
F +V++++ + + S +E+V S L+++++ +L+ GN +N+G RG A GF++ SL
Sbjct: 188 FAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLN 246
Query: 1096 KLTDTRARNNK-MTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSK 1154
K+ DT++ +K +TL+HYL ++ +K P +L+ +E+L + A+K+ + L +E+ L
Sbjct: 247 KIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRS 306
Query: 1155 GLEKVVQELSMSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213
GL+ V EL ++ + F ++ +F+ A + L + + +FG
Sbjct: 307 GLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 366
Query: 1214 EDPARC 1219
E+ +
Sbjct: 367 EEAGKI 372
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 17/323 (5%)
Query: 903 EIDMSELENLFS--ATIPNSEKGGKPNQRVPRGPQSDKVQLIDHRRAYNCEIMLSKVKVP 960
++D+ E LF A P + N+ + + KV L++ RA N I L K
Sbjct: 48 DLDLDRFEELFKTKAQGPALDLICSKNKTAQKA--ASKVTLLEANRAKNLAITLRKAGRS 105
Query: 961 LPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDK---EKLGKCEQFFLEL 1017
E+ R++ + + D VE L++F PT+ E+ LL+ Y ++ E+L ++F L
Sbjct: 106 AEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLF 165
Query: 1018 MKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNAL 1077
KV R+ ++ +F F + L LN + +A+ V++S KL+++++ IL+LGN +
Sbjct: 166 SKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYM 225
Query: 1078 NQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPA 1137
N + RGA GF+L SL L DT++ + KMTL+H++ + +K PEL +F ++L +E A
Sbjct: 226 N-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKEKYPELANFWQELHFVEKA 284
Query: 1138 SKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASL 1197
+ + L+ + +++ L +G+E + +E S+ +N +LR FL E ++ L
Sbjct: 285 AAVSLENVLLDVKELGRGMELIRRECSIHDNS---------VLRNFLSTNEGKLDKLQRD 335
Query: 1198 YSAVGRNVDALILYFGEDPARCP 1220
+A++ YFGE P P
Sbjct: 336 AKTAEEAYNAVVRYFGESPKTTP 358
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943 DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
D + A N I L ++P E+ +L + ++ + ++NLIK P E++ +L
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
+ + L + EQF + + VPR+ +L FK+QF QV +++ + V +A E++R S
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
+++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ + P
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 282
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
E+L F ++L +E AS++ + L + + + K + E+ VQ + ++ + F +
Sbjct: 283 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 339
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
+ F++ A+ + L ++S + L YF DP + E+
Sbjct: 340 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 383
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943 DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
D + A N I L ++P E+ +L + ++ + ++NLIK P E++ +L
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
+ + L + EQF + + VPR+ +L FK+QF QV +++ + V +A E++R S
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
+++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ + P
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 263
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
E+L F ++L +E AS++ + L + + + K + E+ VQ + ++ + F +
Sbjct: 264 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 320
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
+ F++ A+ + L ++S + L YF DP + E+
Sbjct: 321 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 364
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 943 DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG 1002
D + A N I L ++P E+ +L + ++ + ++NLIK P E++ +L
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 1003 DKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062
+ + L + EQF + + VPR+ +L FK+QF QV +++ + V +A E++R S
Sbjct: 73 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 1063 LRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLP 1122
+++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ + P
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 192
Query: 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL---EKVVQELSMSENDGAISENFSKI 1179
E+L F ++L +E AS++ + L + + + K + E+ VQ + ++ + F +
Sbjct: 193 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDE---KDKFVEK 249
Query: 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQ 1223
+ F++ A+ + L ++S + L YF DP + E+
Sbjct: 250 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEE 293
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 139/320 (43%), Gaps = 50/320 (15%)
Query: 870 KKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQR 929
KKLK LHW KL S+W +G+A K + D+ E + + EK +
Sbjct: 5 KKLKQLHWEKLD-CTDNSIWG----TGKAEKFAD-DLYE-----KGVLADLEKAFAAREI 53
Query: 930 VPRGPQSDKVQLI--DHRRAYNCEI-MLSKVKVPLPELMRSVLALEDSAIDADQVENLIK 986
+ K+ + D + + + M S + V +L++ +L + D Q ++++
Sbjct: 54 KSLASKEFKITFLSRDISQQFGINLHMYSSLSVA--DLVKKILNCDR---DFLQTPSVVE 108
Query: 987 FCPTKE----EMDLLKGYT-------------------GDKEKLGKCEQFFLELMKVPRV 1023
F E ++L + Y D L + +Q +L+LM +
Sbjct: 109 FLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLM--VNL 166
Query: 1024 ES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQ 1079
ES ++R + + + ++L + L V+ A ++ S LR + IL++GN +N
Sbjct: 167 ESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMND 226
Query: 1080 GTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASK 1139
+ + A GF+L +L +LT + N MT ++Y+ K++ P DF +L + K
Sbjct: 227 TSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVK 284
Query: 1140 IQLKFLAEEMQALSKGLEKV 1159
+ ++ L + + S+ + V
Sbjct: 285 VSIEQLVNDCKDFSQSIVNV 304
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1003 DKEKLGKCEQFFLELMKVPRVES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVR 1058
D L + +Q +L+LM +ES ++R + + + ++L + L V+ A ++
Sbjct: 177 DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 234
Query: 1059 NSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1118
S LR + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ K++
Sbjct: 235 ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 292
Query: 1119 DKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV 1159
P DF +L + K+ ++ L + + S+ + V
Sbjct: 293 LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 333
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1003 DKEKLGKCEQFFLELMKVPRVES----KLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVR 1058
D L + +Q +L+LM +ES ++R + + + ++L + L V+ A ++
Sbjct: 154 DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 211
Query: 1059 NSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1118
S LR + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ K++
Sbjct: 212 ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 269
Query: 1119 DKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKV 1159
P DF +L + K+ ++ L + + S+ + V
Sbjct: 270 LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 310
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 108 RSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELL 167
R+ +WL NV ++HC G + ++ A+ I+ YS + ++Y + P L
Sbjct: 104 RNMYNWLLQNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGL 162
Query: 168 QLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDRALTLDCVILRSIPNFDGQ-GGCRPIFR 226
PS RYL Y+ + P + LT+ + + +P F+ Q GCRP
Sbjct: 163 S--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYC- 213
Query: 227 IYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDD 286
D + + +Y+T + ++ Y+ + ++ I ++ +QGDVV+ L
Sbjct: 214 ----DVLIGETK----IYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVVVSMYHLRST 264
Query: 287 LE-------REEMMFRVVFNTAFI--RSNILMLNLDEVDILWNAKELFPKEFRAEI 333
+ +F++ F+T FI + +L E+D + E +P+ F+ +
Sbjct: 265 IGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDAC-DVPEKYPQLFQVTL 319
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 79 SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138
++F+ + YP + P L E+I F + WLS ++V +HC + G M+
Sbjct: 73 AKFNCRVAQYPFEDHNPPQL--ELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 129
Query: 139 AALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR--RNVVSEWP 196
A L++R ++ + LD R+ + +PSQ RY+ Y S +N + P
Sbjct: 130 CAYLLHRGKFLKAQEALDFYGEVRTRDKKGVT-----IPSQRRYVYYYSYLLKNHLDYRP 184
Query: 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTY 256
AL ++ +IP F G G C P FV K+ S S ++ +
Sbjct: 185 V---ALLFHKMMFETIPMFSG-GTCNP--------QFVVCQLKVKIYSSNSGPTRREDKF 232
Query: 257 KQAECELVKIDINCCIQGDVVLECISLNDDLEREEMMFRVVFNTAFI 303
E + C GD+ +E + + +++ MF NT FI
Sbjct: 233 MYFE---FPQPLPVC--GDIKVEFFHKQNKMLKKDKMFHFWVNTFFI 274
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 108/243 (44%), Gaps = 24/243 (9%)
Query: 106 FLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI-YRQAPR 164
F+ + W++ +V+ +HC +GG ++++ L+ ++ + L+ R+
Sbjct: 113 FIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDF 171
Query: 165 ELLQLLSPLNPVPSQLRYLQYVS--RRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCR 222
E+ + + SQ+RY+ Y ++N + PP+ + L + V + +I QG
Sbjct: 172 EVGDVFQGVE-TASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAI-----QG--- 221
Query: 223 PIFRIYGQDPF--VANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQGDVVL 278
+ R G D + ++R +L ++ Y + + V ++ C + GD+ +
Sbjct: 222 -VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATD-DCVTCEVKNCPVLAGDIKV 279
Query: 279 ECISLNDDLER--EEMMFRVVFNTAFIRSNILMLNLDEVDILWNAK--ELFPKEFRAEIL 334
+S + L R + F FNT+ + + + L +E+D K +++ F ++
Sbjct: 280 RFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLT 339
Query: 335 FSE 337
FS+
Sbjct: 340 FSD 342
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 108/243 (44%), Gaps = 24/243 (9%)
Query: 106 FLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI-YRQAPR 164
F+ + W++ +V+ +HC +GG ++++ L+ ++ + L+ R+
Sbjct: 101 FIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDF 159
Query: 165 ELLQLLSPLNPVPSQLRYLQYVS--RRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCR 222
E+ + + SQ+RY+ Y ++N + PP+ + L + V + +I QG
Sbjct: 160 EVGDVFQGVE-TASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAI-----QG--- 209
Query: 223 PIFRIYGQDPF--VANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQGDVVL 278
+ R G D + ++R +L ++ Y + + V ++ C + GD+ +
Sbjct: 210 -VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATD-DCVTCEVKNCPVLAGDIKV 267
Query: 279 ECISLNDDLER--EEMMFRVVFNTAFIRSNILMLNLDEVDILWNAK--ELFPKEFRAEIL 334
+S + L R + F FNT+ + + + L +E+D K +++ F ++
Sbjct: 268 RFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLT 327
Query: 335 FSE 337
FS+
Sbjct: 328 FSD 330
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 104/242 (42%), Gaps = 22/242 (9%)
Query: 106 FLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRE 165
F+ + W++ +V+ +HC +GG ++++ L+ ++ + L+ Y + R
Sbjct: 91 FIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE--YFGSRRT 147
Query: 166 LLQLLSPLNPV--PSQLRYLQYVS--RRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGC 221
++ V SQ+RY+ Y ++N + PP+ + L + V + +I G
Sbjct: 148 DFEVGDVFQGVFTASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQGVGRGNGS 206
Query: 222 RPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQGDVVLE 279
+I ++R +L ++ Y + + V ++ C + GD+ +
Sbjct: 207 DLSMQI-------VSERQEVLLCKFAEGYNCALQYDATD-DCVTCEVKNCPVLAGDIKVR 258
Query: 280 CISLNDDLER--EEMMFRVVFNTAFIRSNILMLNLDEVDILWNAK--ELFPKEFRAEILF 335
+S + L R + F FNT+ + + + L +E+D K +++ F ++ F
Sbjct: 259 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTF 318
Query: 336 SE 337
S+
Sbjct: 319 SD 320
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/241 (18%), Positives = 103/241 (42%), Gaps = 20/241 (8%)
Query: 106 FLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI-YRQAPR 164
F+ + W++ +V+ +HC + G ++++ L+ ++ + L+ R+
Sbjct: 101 FIDDAKVWMTSDPDHVIAIHC-KAGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDF 159
Query: 165 ELLQLLSPLNPVPSQLRYLQYVS--RRNVVSEWPPLDRALTLDCVILRSIPNFDGQGGCR 222
E+ + + SQ+RY+ Y ++N + PP+ + L + V + +I G
Sbjct: 160 EVGDVFQGVE-TASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQGVGRGNGSD 217
Query: 223 PIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQGDVVLEC 280
+I ++R +L ++ Y + + V ++ C + GD+ +
Sbjct: 218 LSMQI-------VSERQEVLLCKFAEGYNCALQYDATD-DCVTCEVKNCPVLAGDIKVRF 269
Query: 281 ISLNDDLER--EEMMFRVVFNTAFIRSNILMLNLDEVDILWNAK--ELFPKEFRAEILFS 336
+S + L R + F FNT+ + + + L +E+D K +++ F ++ FS
Sbjct: 270 MSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFS 329
Query: 337 E 337
+
Sbjct: 330 D 330
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 952 IMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCE 1011
+ L+ +K L E ++ L ++ D + + L+G TG+ + G +
Sbjct: 1065 VKLTNLKKALGETGKAEFELT-GGVNGDSWFGIYSTATAPD----LQGSTGNAQDFGGYK 1119
Query: 1012 QFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRS 1045
F L+ +K+ R+ES+ R K + +V ++R
Sbjct: 1120 DFVLDNLKIERIESQTRT---KAEAQDKVKEIRG 1150
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 35 WEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG 94
W E +Y ++ + E++ Q+++ F+ + + + + +F T D+P Q G
Sbjct: 433 WPAERSARYQYFVVDPMAEYNM-PQYILREFKVTDARDGQSRTVRQFQFT--DWPEQ--G 487
Query: 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGE--- 151
P I + ++ GQ + +HC G F+ ++++ R +Y G
Sbjct: 488 VPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDI 547
Query: 152 YKTLDMIYRQAP 163
++T+ M+ Q P
Sbjct: 548 FQTVKMLRTQRP 559
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 35 WEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG 94
W E +Y ++ + E++ Q+++ F+ + + + + +F T D+P Q G
Sbjct: 421 WPAERSARYQYFVVDPMAEYNM-PQYILREFKVTDARDGQSRTIRQFQFT--DWPEQ--G 475
Query: 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSG---E 151
P I + ++ GQ + +HC G F+ ++++ R +Y G
Sbjct: 476 VPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDM 535
Query: 152 YKTLDMIYRQAP 163
++T+ + Q P
Sbjct: 536 FQTVKTLRTQRP 547
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 35 WEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG 94
W E +Y ++ + E++ Q+++ F+ + + + + +F T D+P Q G
Sbjct: 435 WPAERSARYQYFVVDPMAEYNM-PQYILREFKVTDARDGQSRTVRQFQFT--DWPEQ--G 489
Query: 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGE--- 151
P I + ++ GQ + +HC G F+ ++++ R +Y G
Sbjct: 490 APKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDI 549
Query: 152 YKTLDMIYRQAP 163
++T+ ++ Q P
Sbjct: 550 FQTVKVLRTQRP 561
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,602,533
Number of Sequences: 62578
Number of extensions: 1051557
Number of successful extensions: 2496
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2473
Number of HSP's gapped (non-prelim): 31
length of query: 1237
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1127
effective length of database: 8,089,757
effective search space: 9117156139
effective search space used: 9117156139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)