Query 000884
Match_columns 1237
No_of_seqs 663 out of 2481
Neff 6.8
Searched_HMMs 46136
Date Tue Apr 2 00:43:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 1.3E-65 2.8E-70 595.5 37.0 364 865-1232 619-986 (1102)
2 smart00498 FH2 Formin Homology 100.0 6.3E-61 1.4E-65 573.0 35.5 362 866-1234 4-369 (432)
3 PF02181 FH2: Formin Homology 100.0 1.2E-60 2.6E-65 562.4 27.6 364 865-1234 4-368 (370)
4 KOG2283 Clathrin coat dissocia 100.0 1.6E-54 3.5E-59 505.4 26.9 303 4-338 3-317 (434)
5 KOG1923 Rac1 GTPase effector F 100.0 3.9E-47 8.5E-52 446.5 25.3 361 860-1233 359-724 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 4.8E-41 1E-45 375.5 30.9 345 867-1232 279-640 (817)
7 KOG1922 Rho GTPase effector BN 100.0 3.2E-39 6.9E-44 416.2 38.8 363 866-1233 390-777 (833)
8 PF10409 PTEN_C2: C2 domain of 99.9 3.9E-26 8.5E-31 231.1 15.6 130 198-337 2-134 (134)
9 PTZ00242 protein tyrosine phos 99.6 2.5E-15 5.5E-20 157.4 16.3 151 12-191 7-159 (166)
10 PTZ00393 protein tyrosine phos 99.5 3.9E-13 8.5E-18 145.5 14.3 144 16-191 87-230 (241)
11 KOG1720 Protein tyrosine phosp 99.4 5.9E-12 1.3E-16 131.6 13.4 157 11-189 48-207 (225)
12 PHA03247 large tegument protei 99.3 1.9E-09 4E-14 142.0 34.9 27 1045-1073 3109-3135(3151)
13 PHA03247 large tegument protei 99.2 5.5E-09 1.2E-13 137.7 33.2 11 272-282 2131-2141(3151)
14 KOG1924 RhoA GTPase effector D 99.2 9.2E-10 2E-14 131.4 22.2 135 1027-1183 838-985 (1102)
15 PF05706 CDKN3: Cyclin-depende 99.1 1.3E-10 2.8E-15 119.3 9.4 124 20-155 40-168 (168)
16 smart00195 DSPc Dual specifici 99.1 2E-09 4.4E-14 109.4 14.2 136 17-188 2-137 (138)
17 COG2453 CDC14 Predicted protei 99.0 3.4E-09 7.4E-14 113.0 11.1 97 80-189 70-166 (180)
18 PF00782 DSPc: Dual specificit 98.9 3.9E-09 8.4E-14 106.5 8.9 122 48-188 11-132 (133)
19 KOG1719 Dual specificity phosp 98.9 7.7E-09 1.7E-13 103.2 9.8 98 77-188 70-168 (183)
20 PRK12361 hypothetical protein; 98.8 3.5E-08 7.6E-13 122.9 16.1 143 15-189 94-236 (547)
21 cd00127 DSPc Dual specificity 98.8 4.3E-08 9.2E-13 99.5 13.0 121 16-162 2-122 (139)
22 smart00012 PTPc_DSPc Protein t 98.6 1.7E-07 3.7E-12 89.7 10.7 89 88-186 8-102 (105)
23 smart00404 PTPc_motif Protein 98.6 1.7E-07 3.7E-12 89.7 10.7 89 88-186 8-102 (105)
24 KOG2836 Protein tyrosine phosp 98.4 7.4E-06 1.6E-10 80.2 14.7 148 10-187 6-153 (173)
25 KOG3671 Actin regulatory prote 98.1 6.1E-05 1.3E-09 87.9 16.1 9 135-143 13-21 (569)
26 cd00047 PTPc Protein tyrosine 98.1 1.1E-05 2.5E-10 89.3 9.8 92 85-186 132-228 (231)
27 PRK15375 pathogenicity island 98.0 1.5E-05 3.2E-10 94.9 9.3 96 83-187 423-526 (535)
28 smart00194 PTPc Protein tyrosi 97.8 5.4E-05 1.2E-09 85.4 9.2 86 89-185 165-254 (258)
29 PF03162 Y_phosphatase2: Tyros 97.7 6.4E-05 1.4E-09 79.0 7.5 124 46-188 23-148 (164)
30 PF00102 Y_phosphatase: Protei 97.6 0.00012 2.7E-09 80.6 6.9 92 84-186 136-232 (235)
31 KOG0792 Protein tyrosine phosp 97.4 0.00032 6.8E-09 88.7 8.7 89 89-185 1035-1124(1144)
32 KOG1923 Rac1 GTPase effector F 97.2 0.0038 8.2E-08 76.9 13.4 162 1006-1187 562-726 (830)
33 KOG2386 mRNA capping enzyme, g 97.1 0.001 2.2E-08 77.8 7.9 142 14-166 22-169 (393)
34 PHA02747 protein tyrosine phos 96.9 0.0035 7.7E-08 72.9 10.3 89 85-183 184-288 (312)
35 PF14566 PTPlike_phytase: Inos 96.9 0.00096 2.1E-08 69.1 4.6 60 79-143 89-148 (149)
36 KOG0790 Protein tyrosine phosp 96.9 0.00071 1.5E-08 78.2 3.8 117 54-186 378-516 (600)
37 PLN02727 NAD kinase 96.9 0.0018 3.9E-08 82.1 7.5 100 38-148 262-369 (986)
38 PHA02742 protein tyrosine phos 96.8 0.0027 5.8E-08 73.6 8.0 87 89-185 190-290 (303)
39 KOG0791 Protein tyrosine phosp 96.7 0.0042 9.2E-08 71.3 8.0 99 81-187 251-350 (374)
40 PHA02746 protein tyrosine phos 96.6 0.0068 1.5E-07 70.9 9.3 88 89-186 209-309 (323)
41 PHA02740 protein tyrosine phos 96.6 0.0041 8.9E-08 71.8 7.1 91 85-185 178-282 (298)
42 TIGR01244 conserved hypothetic 96.4 0.015 3.2E-07 59.4 9.4 114 16-158 2-121 (135)
43 PHA02738 hypothetical protein; 96.4 0.012 2.5E-07 68.9 9.6 92 85-186 179-289 (320)
44 KOG1716 Dual specificity phosp 96.3 0.072 1.6E-06 61.3 15.0 42 118-161 154-195 (285)
45 KOG1922 Rho GTPase effector BN 96.3 2.1 4.6E-05 56.8 30.4 75 1127-1201 719-793 (833)
46 PF13350 Y_phosphatase3: Tyros 96.0 0.0079 1.7E-07 63.3 4.8 37 109-147 115-151 (164)
47 COG5599 PTP2 Protein tyrosine 95.9 0.011 2.4E-07 65.1 5.4 52 89-146 192-244 (302)
48 KOG1572 Predicted protein tyro 95.4 0.12 2.6E-06 56.5 11.1 103 48-158 78-184 (249)
49 KOG1717 Dual specificity phosp 95.4 0.035 7.6E-07 61.0 7.0 68 85-159 220-289 (343)
50 COG2365 Protein tyrosine/serin 94.9 0.047 1E-06 61.5 6.7 50 101-151 118-167 (249)
51 smart00498 FH2 Formin Homology 94.6 0.12 2.5E-06 63.1 9.3 90 1127-1216 311-403 (432)
52 KOG0789 Protein tyrosine phosp 94.0 0.15 3.3E-06 61.5 8.5 86 89-186 271-362 (415)
53 KOG1830 Wiskott Aldrich syndro 93.9 1.4 3E-05 51.6 15.3 8 351-358 141-148 (518)
54 KOG1718 Dual specificity phosp 93.8 0.6 1.3E-05 48.6 10.9 123 7-158 8-131 (198)
55 PF14671 DSPn: Dual specificit 91.7 0.27 5.8E-06 50.4 5.1 65 91-158 39-107 (141)
56 KOG4228 Protein tyrosine phosp 87.6 0.93 2E-05 59.3 6.5 53 98-151 997-1050(1087)
57 PF04273 DUF442: Putative phos 87.5 1.1 2.4E-05 44.1 5.7 93 15-133 1-99 (110)
58 KOG0793 Protein tyrosine phosp 87.2 0.64 1.4E-05 57.3 4.5 71 89-162 899-974 (1004)
59 KOG0994 Extracellular matrix g 87.0 33 0.00071 45.4 19.0 64 1145-1208 1659-1726(1758)
60 PF09325 Vps5: Vps5 C terminal 86.8 21 0.00045 39.6 16.1 52 1178-1233 166-217 (236)
61 KOG1962 B-cell receptor-associ 86.0 14 0.00031 40.5 13.5 69 1010-1079 11-79 (216)
62 KOG0994 Extracellular matrix g 85.3 6.6 0.00014 51.3 11.9 21 1062-1082 1469-1489(1758)
63 PF10234 Cluap1: Clusterin-ass 82.7 11 0.00023 42.9 11.2 76 1087-1162 106-191 (267)
64 PF08580 KAR9: Yeast cortical 82.6 21 0.00045 46.2 15.1 44 1184-1231 237-280 (683)
65 cd07593 BAR_MUG137_fungi The B 80.0 4.2 9E-05 44.9 6.7 17 1041-1057 10-26 (215)
66 KOG4228 Protein tyrosine phosp 78.6 1.9 4.1E-05 56.6 4.0 48 89-139 702-749 (1087)
67 COG5350 Predicted protein tyro 76.4 9.9 0.00022 39.3 7.6 121 14-157 7-130 (172)
68 cd07627 BAR_Vps5p The Bin/Amph 75.7 77 0.0017 35.0 15.2 52 1178-1233 146-197 (216)
69 PF04849 HAP1_N: HAP1 N-termin 74.3 1.1E+02 0.0023 35.7 16.0 29 1037-1065 96-124 (306)
70 PRK10132 hypothetical protein; 72.5 22 0.00048 35.0 8.7 74 1141-1216 13-86 (108)
71 PF06008 Laminin_I: Laminin Do 71.6 1.5E+02 0.0033 33.7 16.8 13 1063-1075 103-115 (264)
72 PF06160 EzrA: Septation ring 69.9 58 0.0012 41.4 14.1 28 1035-1062 105-132 (560)
73 cd07594 BAR_Endophilin_B The B 68.9 23 0.0005 39.5 9.1 12 1070-1081 78-89 (229)
74 cd07638 BAR_ACAP2 The Bin/Amph 68.8 54 0.0012 35.9 11.6 44 1033-1078 4-47 (200)
75 KOG0260 RNA polymerase II, lar 68.3 2.3E+02 0.0051 38.3 18.4 13 116-128 606-618 (1605)
76 KOG1029 Endocytic adaptor prot 68.1 1E+02 0.0022 39.6 14.7 46 1018-1063 437-483 (1118)
77 PF06013 WXG100: Proteins of 1 68.0 70 0.0015 28.7 10.8 64 1142-1206 16-79 (86)
78 PHA00728 hypothetical protein 67.6 17 0.00038 35.7 6.6 25 1140-1164 5-29 (151)
79 KOG3951 Uncharacterized conser 67.3 75 0.0016 35.5 12.1 198 986-1233 24-228 (321)
80 cd08682 C2_Rab11-FIP_classI C2 66.8 47 0.001 33.0 10.2 84 207-304 6-94 (126)
81 PF15254 CCDC14: Coiled-coil d 66.8 70 0.0015 41.1 13.3 55 1178-1232 525-580 (861)
82 PRK04778 septation ring format 65.2 88 0.0019 39.8 14.4 28 1035-1062 109-136 (569)
83 cd07596 BAR_SNX The Bin/Amphip 65.1 2E+02 0.0044 30.9 17.8 36 1178-1213 148-183 (218)
84 cd07636 BAR_GRAF The Bin/Amphi 65.1 1.7E+02 0.0036 32.4 14.4 39 1036-1074 7-50 (207)
85 KOG2129 Uncharacterized conser 65.0 3.1E+02 0.0067 33.0 17.6 80 1139-1231 252-336 (552)
86 cd07620 BAR_SH3BP1 The Bin/Amp 64.9 38 0.00081 38.3 9.6 20 1038-1057 15-34 (257)
87 cd07606 BAR_SFC_plant The Bin/ 64.7 1.5E+02 0.0033 32.6 14.1 41 1034-1074 4-49 (202)
88 smart00806 AIP3 Actin interact 64.2 1.4E+02 0.0029 36.3 14.5 66 1140-1205 250-326 (426)
89 PF12325 TMF_TATA_bd: TATA ele 64.0 65 0.0014 32.4 10.2 31 1185-1215 64-94 (120)
90 KOG0250 DNA repair protein RAD 63.7 2.4E+02 0.0052 38.0 17.6 24 1141-1164 359-382 (1074)
91 KOG4360 Uncharacterized coiled 63.6 37 0.0008 41.4 9.7 38 1178-1215 257-294 (596)
92 PF12325 TMF_TATA_bd: TATA ele 63.4 25 0.00055 35.2 7.2 98 1106-1210 14-117 (120)
93 cd07664 BAR_SNX2 The Bin/Amphi 63.2 2.2E+02 0.0048 32.0 15.4 52 1178-1233 162-213 (234)
94 KOG1240 Protein kinase contain 63.0 61 0.0013 43.6 12.1 171 1046-1232 443-626 (1431)
95 KOG0995 Centromere-associated 62.9 1.3E+02 0.0027 37.7 14.2 30 1028-1057 361-390 (581)
96 COG4575 ElaB Uncharacterized c 62.8 54 0.0012 31.9 8.9 73 1142-1216 10-83 (104)
97 cd07639 BAR_ACAP1 The Bin/Amph 62.7 95 0.0021 34.0 12.0 41 1035-1075 6-51 (200)
98 cd04042 C2A_MCTP_PRT C2 domain 62.4 95 0.0021 30.5 11.3 87 203-304 3-90 (121)
99 PF03114 BAR: BAR domain; Int 62.3 50 0.0011 35.7 10.2 21 1037-1057 25-45 (229)
100 TIGR02132 phaR_Bmeg polyhydrox 62.1 73 0.0016 33.9 10.4 52 1137-1191 111-162 (189)
101 COG4985 ABC-type phosphate tra 61.7 22 0.00048 39.0 6.8 60 1146-1205 185-244 (289)
102 cd07617 BAR_Endophilin_B2 The 61.2 41 0.00088 37.3 8.9 27 1188-1214 160-186 (220)
103 PRK11637 AmiB activator; Provi 61.1 1.2E+02 0.0026 37.2 14.1 20 1039-1058 97-116 (428)
104 PF05911 DUF869: Plant protein 60.5 2.7E+02 0.0059 36.7 17.4 79 1141-1219 618-703 (769)
105 cd07598 BAR_FAM92 The Bin/Amph 60.3 1.5E+02 0.0031 32.9 13.1 29 1185-1213 138-166 (211)
106 PF01591 6PF2K: 6-phosphofruct 60.3 6.9 0.00015 43.5 2.9 87 23-126 14-103 (222)
107 KOG0996 Structural maintenance 59.4 2.4E+02 0.0051 38.3 16.4 25 1140-1164 405-429 (1293)
108 cd07592 BAR_Endophilin_A The B 59.1 38 0.00083 37.7 8.4 13 1069-1081 72-84 (223)
109 PRK00142 putative rhodanese-re 58.9 28 0.00062 40.8 7.8 104 17-145 89-194 (314)
110 cd08678 C2_C21orf25-like C2 do 58.6 96 0.0021 30.8 10.7 122 203-339 2-123 (126)
111 PHA03378 EBNA-3B; Provisional 58.1 1.3E+02 0.0028 38.1 13.1 12 99-110 107-118 (991)
112 cd07623 BAR_SNX1_2 The Bin/Amp 57.8 2.7E+02 0.0058 31.0 15.0 37 1178-1214 152-188 (224)
113 PHA03246 large tegument protei 57.2 3.9E+02 0.0086 39.1 18.3 154 1039-1218 1649-1813(3095)
114 KOG3973 Uncharacterized conser 57.1 3.1E+02 0.0067 32.2 15.0 45 972-1017 32-76 (465)
115 cd07307 BAR The Bin/Amphiphysi 56.9 2.2E+02 0.0047 29.5 13.7 37 1043-1079 5-46 (194)
116 COG0497 RecN ATPase involved i 56.6 76 0.0016 39.9 11.2 10 962-971 117-126 (557)
117 cd04022 C2A_MCTP_PRT_plant C2 56.5 1.1E+02 0.0023 30.5 10.6 121 202-336 2-126 (127)
118 PRK10404 hypothetical protein; 56.5 66 0.0014 31.4 8.5 72 1143-1216 8-80 (101)
119 cd07595 BAR_RhoGAP_Rich-like T 56.2 72 0.0016 36.1 10.1 16 1068-1083 64-79 (244)
120 PF10805 DUF2730: Protein of u 56.1 73 0.0016 31.2 8.9 71 1136-1211 31-101 (106)
121 PRK01415 hypothetical protein; 56.0 41 0.00089 38.0 8.1 103 18-146 91-195 (247)
122 cd08384 C2B_Rabphilin_Doc2 C2 55.6 45 0.00098 33.4 7.8 34 197-230 10-43 (133)
123 cd01518 RHOD_YceA Member of th 54.8 17 0.00038 34.5 4.4 79 45-146 7-85 (101)
124 cd07665 BAR_SNX1 The Bin/Amphi 54.6 3.6E+02 0.0078 30.4 15.4 55 1174-1233 159-213 (234)
125 PF05278 PEARLI-4: Arabidopsis 54.1 19 0.00042 40.7 5.1 107 1106-1214 124-239 (269)
126 cd08375 C2_Intersectin C2 doma 53.9 97 0.0021 31.5 9.9 88 200-301 15-102 (136)
127 PF02181 FH2: Formin Homology 53.6 88 0.0019 37.3 11.1 90 1139-1232 280-369 (370)
128 cd08410 C2B_Synaptotagmin-17 C 53.5 75 0.0016 32.1 9.0 99 195-303 9-110 (135)
129 PF03999 MAP65_ASE1: Microtubu 53.3 4.4 9.6E-05 51.8 0.0 25 1035-1059 157-181 (619)
130 KOG4302 Microtubule-associated 53.3 56 0.0012 41.8 9.4 35 1174-1208 229-263 (660)
131 cd07664 BAR_SNX2 The Bin/Amphi 53.3 1.4E+02 0.003 33.7 11.7 22 1007-1028 17-39 (234)
132 PF00168 C2: C2 domain; Inter 53.1 1.3E+02 0.0029 26.5 9.9 82 202-295 1-83 (85)
133 cd04036 C2_cPLA2 C2 domain pre 52.9 1.2E+02 0.0027 29.6 10.3 91 203-305 3-93 (119)
134 PF08317 Spc7: Spc7 kinetochor 52.5 78 0.0017 37.3 10.2 14 1043-1056 120-133 (325)
135 KOG0132 RNA polymerase II C-te 51.9 5.7E+02 0.012 33.4 17.4 15 39-53 39-53 (894)
136 cd08390 C2A_Synaptotagmin-15-1 51.1 71 0.0015 31.3 8.3 33 198-230 12-45 (123)
137 cd08685 C2_RGS-like C2 domain 50.0 1.2E+02 0.0026 30.0 9.7 95 199-303 11-107 (119)
138 PF12054 DUF3535: Domain of un 50.0 2.8E+02 0.006 34.2 14.6 167 1040-1232 185-363 (441)
139 PHA03378 EBNA-3B; Provisional 49.5 2.6E+02 0.0056 35.6 13.7 14 99-112 103-116 (991)
140 KOG3745 Exocyst subunit - Sec1 49.4 2.5E+02 0.0053 36.5 14.0 145 1064-1212 176-352 (763)
141 PF09730 BicD: Microtubule-ass 48.6 1.7E+02 0.0036 38.1 12.7 104 1123-1230 374-484 (717)
142 cd07601 BAR_APPL The Bin/Amphi 48.6 1.6E+02 0.0035 32.6 11.1 42 1033-1074 4-50 (215)
143 PF15605 Toxin_52: Putative to 47.7 78 0.0017 30.7 7.2 53 1146-1198 49-101 (103)
144 cd08403 C2B_Synaptotagmin-3-5- 47.2 99 0.0022 31.0 8.7 95 197-301 11-108 (134)
145 TIGR03031 cas_csx12 CRISPR-ass 47.1 97 0.0021 38.7 9.7 27 1192-1218 576-602 (802)
146 cd08385 C2A_Synaptotagmin-1-5- 46.3 1.4E+02 0.0031 29.3 9.6 94 198-303 14-110 (124)
147 cd08387 C2A_Synaptotagmin-8 C2 46.3 1.2E+02 0.0027 29.8 9.2 95 198-304 14-111 (124)
148 PF08855 DUF1825: Domain of un 46.2 3.1E+02 0.0067 27.2 11.3 59 1174-1234 40-102 (108)
149 PRK04863 mukB cell division pr 45.7 1.2E+02 0.0026 42.9 11.7 52 1022-1073 212-265 (1486)
150 cd07614 BAR_Endophilin_A2 The 45.5 64 0.0014 35.9 7.4 22 1174-1195 157-178 (223)
151 cd08692 C2B_Tac2-N C2 domain s 45.4 1.1E+02 0.0023 31.5 8.5 99 191-302 5-109 (135)
152 PRK05320 rhodanese superfamily 45.3 48 0.001 37.7 6.7 107 19-146 90-199 (257)
153 KOG1991 Nuclear transport rece 45.2 2.9E+02 0.0062 36.9 13.9 203 987-1211 357-600 (1010)
154 PF04740 LXG: LXG domain of WX 45.0 4.1E+02 0.0089 28.7 13.8 35 1178-1212 159-193 (204)
155 cd04037 C2E_Ferlin C2 domain f 44.9 97 0.0021 30.8 8.1 87 203-301 3-89 (124)
156 KOG2211 Predicted Golgi transp 44.8 3.6E+02 0.0078 34.5 14.1 60 1045-1104 149-208 (797)
157 smart00787 Spc7 Spc7 kinetocho 44.7 1.4E+02 0.0031 35.0 10.5 19 1184-1202 241-259 (312)
158 cd08386 C2A_Synaptotagmin-7 C2 44.6 57 0.0012 32.2 6.4 34 197-230 13-46 (125)
159 PF15112 DUF4559: Domain of un 44.4 2E+02 0.0043 33.4 11.1 55 1148-1202 230-284 (307)
160 PF10455 BAR_2: Bin/amphiphysi 44.2 5.4E+02 0.012 29.9 14.8 14 1107-1120 120-133 (289)
161 PF14643 DUF4455: Domain of un 44.2 2.2E+02 0.0047 35.5 12.6 11 1206-1216 454-464 (473)
162 cd07651 F-BAR_PombeCdc15_like 43.9 4.3E+02 0.0093 29.5 13.9 39 1177-1215 152-190 (236)
163 PF07888 CALCOCO1: Calcium bin 43.9 3.8E+02 0.0083 33.8 14.3 53 1110-1162 380-432 (546)
164 cd07602 BAR_RhoGAP_OPHN1-like 43.7 4.9E+02 0.011 28.8 14.9 25 1035-1059 6-30 (207)
165 cd08376 C2B_MCTP_PRT C2 domain 43.6 1.9E+02 0.0041 28.0 9.9 87 203-304 3-90 (116)
166 cd07665 BAR_SNX1 The Bin/Amphi 43.4 2.9E+02 0.0062 31.2 12.2 54 1006-1059 16-71 (234)
167 cd08402 C2B_Synaptotagmin-1 C2 43.0 95 0.0021 31.2 7.8 96 195-300 10-108 (136)
168 PF04420 CHD5: CHD5-like prote 42.7 1.1E+02 0.0024 32.3 8.4 66 1143-1212 36-103 (161)
169 KOG0804 Cytoplasmic Zn-finger 42.6 1.1E+02 0.0023 37.1 9.0 68 1146-1213 381-452 (493)
170 PHA02562 46 endonuclease subun 42.5 3.1E+02 0.0066 34.6 14.0 35 1038-1074 213-247 (562)
171 PF05377 FlaC_arch: Flagella a 42.5 1.1E+02 0.0023 26.6 6.5 47 1143-1203 3-49 (55)
172 PLN03229 acetyl-coenzyme A car 42.2 8.9E+02 0.019 31.8 17.3 63 1150-1213 669-736 (762)
173 COG4942 Membrane-bound metallo 42.0 5.1E+02 0.011 31.7 14.5 43 1035-1077 84-127 (420)
174 cd08681 C2_fungal_Inn1p-like C 41.9 1.2E+02 0.0027 29.4 8.3 87 202-302 3-89 (118)
175 cd08393 C2A_SLP-1_2 C2 domain 41.9 1.6E+02 0.0034 29.3 9.1 98 197-304 12-113 (125)
176 PF05615 THOC7: Tho complex su 41.7 2.3E+02 0.005 28.9 10.4 22 1059-1080 14-35 (139)
177 cd04050 C2B_Synaptotagmin-like 41.5 1.8E+02 0.0039 27.8 9.2 84 202-303 2-86 (105)
178 cd07667 BAR_SNX30 The Bin/Amph 41.4 1.7E+02 0.0037 33.0 10.0 13 1058-1070 5-17 (240)
179 KOG3647 Predicted coiled-coil 41.4 1.6E+02 0.0035 33.3 9.4 33 1130-1162 102-134 (338)
180 PF09763 Sec3_C: Exocyst compl 41.3 4.3E+02 0.0092 34.6 15.3 25 1035-1059 27-51 (701)
181 cd07633 BAR_OPHN1 The Bin/Amph 41.0 3.6E+02 0.0078 29.7 12.0 42 1035-1078 6-47 (207)
182 cd08407 C2B_Synaptotagmin-13 C 41.0 1E+02 0.0022 31.7 7.6 97 195-301 10-111 (138)
183 KOG3091 Nuclear pore complex, 40.3 5.2E+02 0.011 32.0 14.2 13 1018-1030 334-346 (508)
184 cd07653 F-BAR_CIP4-like The F- 40.3 5.3E+02 0.012 28.8 14.1 38 1178-1215 164-202 (251)
185 cd04030 C2C_KIAA1228 C2 domain 40.2 2.1E+02 0.0045 28.1 9.8 34 197-230 13-46 (127)
186 cd04041 C2A_fungal C2 domain f 40.0 1.4E+02 0.003 28.9 8.3 29 202-230 3-32 (111)
187 cd07616 BAR_Endophilin_B1 The 39.9 5.1E+02 0.011 29.1 13.3 44 1186-1234 167-210 (229)
188 cd04040 C2D_Tricalbin-like C2 39.9 1.7E+02 0.0037 28.2 8.8 27 205-231 4-30 (115)
189 cd08408 C2B_Synaptotagmin-14_1 39.8 1.2E+02 0.0027 30.8 8.1 96 195-301 10-110 (138)
190 KOG2460 Signal recognition par 39.7 5E+02 0.011 32.5 13.9 73 947-1021 213-290 (593)
191 KOG0213 Splicing factor 3b, su 39.6 3.4E+02 0.0073 35.2 12.8 183 1035-1233 767-970 (1172)
192 PF12889 DUF3829: Protein of u 38.8 1.3E+02 0.0027 34.2 8.9 22 1175-1196 219-240 (276)
193 COG5178 PRP8 U5 snRNP spliceos 38.8 23 0.00049 46.6 2.9 19 1052-1070 627-645 (2365)
194 KOG0996 Structural maintenance 38.6 2.6E+02 0.0057 37.9 12.2 41 1039-1079 859-903 (1293)
195 PF05957 DUF883: Bacterial pro 38.6 1.2E+02 0.0026 28.8 7.3 71 1144-1216 2-73 (94)
196 cd08404 C2B_Synaptotagmin-4 C2 38.4 1.7E+02 0.0036 29.5 8.8 33 198-230 13-45 (136)
197 smart00787 Spc7 Spc7 kinetocho 38.3 1.6E+02 0.0035 34.6 9.6 15 1010-1024 51-66 (312)
198 cd00276 C2B_Synaptotagmin C2 d 38.3 1.6E+02 0.0035 29.1 8.7 33 198-230 12-44 (134)
199 cd07627 BAR_Vps5p The Bin/Amph 37.6 4.4E+02 0.0094 29.1 12.6 16 1042-1057 36-51 (216)
200 cd01531 Acr2p Eukaryotic arsen 37.4 2.2E+02 0.0047 27.6 9.2 16 117-132 60-75 (113)
201 KOG0517 Beta-spectrin [Cytoske 37.4 3E+02 0.0065 39.2 12.6 91 1127-1231 979-1069(2473)
202 KOG3156 Uncharacterized membra 37.2 1.1E+02 0.0025 33.4 7.4 39 1123-1164 102-140 (220)
203 PRK04654 sec-independent trans 37.1 1.9E+02 0.0042 31.8 9.2 42 1175-1216 58-99 (214)
204 PF08429 PLU-1: PLU-1-like pro 37.0 2.9E+02 0.0062 32.5 11.8 27 1190-1216 302-328 (335)
205 PF05266 DUF724: Protein of un 37.0 5.9E+02 0.013 27.8 13.2 22 1141-1162 125-146 (190)
206 PF10168 Nup88: Nuclear pore c 36.8 9.7E+02 0.021 31.6 17.2 64 1141-1204 647-714 (717)
207 PRK10869 recombination and rep 36.7 3E+02 0.0064 35.1 12.4 26 1048-1073 208-233 (553)
208 cd08388 C2A_Synaptotagmin-4-11 36.7 1E+02 0.0022 30.9 6.9 34 197-230 13-47 (128)
209 KOG4673 Transcription factor T 36.7 8.2E+02 0.018 31.6 15.2 25 1191-1215 906-930 (961)
210 cd07618 BAR_Rich1 The Bin/Amph 36.5 2.1E+02 0.0046 32.4 9.8 35 1068-1102 64-98 (246)
211 PF04179 Init_tRNA_PT: Initiat 36.5 46 0.001 40.9 5.0 78 60-141 320-398 (451)
212 KOG0810 SNARE protein Syntaxin 36.4 6.4E+02 0.014 29.5 13.9 28 1032-1059 34-61 (297)
213 PF08317 Spc7: Spc7 kinetochor 36.4 3.6E+02 0.0078 31.8 12.3 15 1010-1024 56-71 (325)
214 KOG4848 Extracellular matrix-a 36.3 3E+02 0.0065 29.7 10.1 51 1178-1228 142-198 (225)
215 smart00188 IL10 Interleukin-10 36.1 2.5E+02 0.0054 29.0 9.3 22 1141-1162 72-93 (137)
216 KOG0948 Nuclear exosomal RNA h 36.0 1.2E+03 0.025 30.9 18.5 61 1017-1081 808-868 (1041)
217 KOG4438 Centromere-associated 36.0 8.7E+02 0.019 29.6 14.9 21 959-979 9-29 (446)
218 PF07159 DUF1394: Protein of u 35.9 2.8E+02 0.006 32.5 10.9 35 986-1023 9-43 (303)
219 PF07426 Dynactin_p22: Dynacti 35.8 5.3E+02 0.011 27.7 12.3 17 1062-1078 55-71 (174)
220 cd04025 C2B_RasA1_RasA4 C2 dom 35.6 2.9E+02 0.0062 27.1 9.8 30 202-231 2-31 (123)
221 KOG4025 Putative apoptosis rel 35.5 2.5E+02 0.0055 29.6 9.2 21 1175-1195 121-141 (207)
222 KOG3876 Arfaptin and related p 35.1 5.2E+02 0.011 29.3 12.1 40 1182-1228 285-324 (341)
223 PF15290 Syntaphilin: Golgi-lo 34.9 1.5E+02 0.0032 33.9 8.1 43 1183-1225 118-165 (305)
224 smart00721 BAR BAR domain. 34.9 6.4E+02 0.014 27.6 15.0 20 1186-1205 174-193 (239)
225 PF08429 PLU-1: PLU-1-like pro 34.8 5.2E+02 0.011 30.3 13.5 34 959-992 17-51 (335)
226 PF04740 LXG: LXG domain of WX 34.8 4.2E+02 0.0092 28.6 11.9 13 1150-1162 109-121 (204)
227 PRK11020 hypothetical protein; 34.7 2.5E+02 0.0055 27.8 8.5 62 1145-1208 3-65 (118)
228 KOG1451 Oligophrenin-1 and rel 34.4 8.1E+02 0.018 31.0 14.6 55 1016-1078 11-65 (812)
229 PF10354 DUF2431: Domain of un 34.4 99 0.0021 32.8 6.5 102 20-128 21-128 (166)
230 PF09787 Golgin_A5: Golgin sub 34.3 1E+03 0.023 29.9 17.0 36 1041-1076 197-232 (511)
231 KOG2396 HAT (Half-A-TPR) repea 34.2 3.1E+02 0.0068 34.0 11.1 49 1044-1092 338-389 (568)
232 cd07637 BAR_ACAP3 The Bin/Amph 34.1 6.7E+02 0.014 27.6 13.6 27 1034-1060 5-31 (200)
233 COG5185 HEC1 Protein involved 34.1 7.9E+02 0.017 30.3 14.1 34 1175-1208 393-426 (622)
234 KOG0243 Kinesin-like protein [ 33.9 1.3E+02 0.0027 40.4 8.5 84 1121-1204 368-470 (1041)
235 TIGR02894 DNA_bind_RsfA transc 33.8 4.1E+02 0.0089 28.1 10.5 21 1073-1096 36-56 (161)
236 COG0497 RecN ATPase involved i 33.7 4.1E+02 0.0089 33.7 12.5 16 1143-1158 345-360 (557)
237 cd08406 C2B_Synaptotagmin-12 C 33.6 1.4E+02 0.0031 30.4 7.4 37 194-230 9-45 (136)
238 KOG0979 Structural maintenance 33.5 1.4E+03 0.03 31.1 17.8 26 960-991 125-150 (1072)
239 cd04031 C2A_RIM1alpha C2 domai 33.5 1.8E+02 0.0038 28.5 7.9 34 197-230 13-46 (125)
240 KOG4809 Rab6 GTPase-interactin 33.4 8.5E+02 0.018 30.6 14.5 68 1035-1113 418-486 (654)
241 KOG3991 Uncharacterized conser 33.4 1.4E+02 0.0029 33.2 7.3 88 1147-1235 93-191 (256)
242 cd04048 C2A_Copine C2 domain f 33.1 1.9E+02 0.0041 28.4 8.0 91 207-304 7-101 (120)
243 COG5034 TNG2 Chromatin remodel 33.0 1.6E+02 0.0035 33.2 7.9 53 1172-1224 63-115 (271)
244 PF12252 SidE: Dot/Icm substra 33.0 3.8E+02 0.0082 36.1 12.0 233 961-1213 1105-1343(1439)
245 cd04019 C2C_MCTP_PRT_plant C2 32.9 5.6E+02 0.012 26.5 11.8 120 203-337 3-133 (150)
246 KOG0978 E3 ubiquitin ligase in 32.9 2.7E+02 0.0059 36.0 11.0 67 1032-1100 84-151 (698)
247 cd08401 C2A_RasA2_RasA3 C2 dom 32.7 3E+02 0.0065 27.2 9.4 88 202-304 2-91 (121)
248 cd04054 C2A_Rasal1_RasA4 C2 do 32.5 3.7E+02 0.008 26.4 10.0 30 202-231 2-31 (121)
249 PF05278 PEARLI-4: Arabidopsis 32.4 3E+02 0.0065 31.5 10.1 19 1185-1203 231-249 (269)
250 PF10475 DUF2450: Protein of u 32.4 5.9E+02 0.013 29.4 13.1 22 1007-1028 56-77 (291)
251 PF02403 Seryl_tRNA_N: Seryl-t 32.4 3.1E+02 0.0067 26.6 9.2 64 1144-1211 40-103 (108)
252 PRK10884 SH3 domain-containing 32.2 2.2E+02 0.0048 31.4 9.0 24 1139-1162 92-115 (206)
253 PF04728 LPP: Lipoprotein leuc 32.2 1.7E+02 0.0036 25.6 6.1 25 1141-1165 4-28 (56)
254 KOG4462 WASP-interacting prote 32.1 9.3E+02 0.02 28.6 22.5 227 557-793 118-374 (437)
255 cd08677 C2A_Synaptotagmin-13 C 32.1 2.5E+02 0.0055 28.1 8.6 92 197-301 11-104 (118)
256 cd08400 C2_Ras_p21A1 C2 domain 32.1 5.2E+02 0.011 25.7 12.1 121 200-337 4-124 (126)
257 TIGR01010 BexC_CtrB_KpsE polys 32.0 2.7E+02 0.0058 33.2 10.5 86 1139-1229 169-255 (362)
258 PF04156 IncA: IncA protein; 32.0 2.3E+02 0.0049 30.4 9.1 23 1142-1164 90-112 (191)
259 cd08616 PI-PLCXD1c Catalytic d 31.9 49 0.0011 38.3 4.1 31 102-132 98-128 (290)
260 PF03915 AIP3: Actin interacti 31.9 1.6E+02 0.0036 35.9 8.6 72 1141-1212 247-322 (424)
261 PF06602 Myotub-related: Myotu 31.7 1.2E+02 0.0026 36.2 7.4 23 117-141 229-251 (353)
262 COG5493 Uncharacterized conser 31.6 3.8E+02 0.0082 29.2 10.0 34 1177-1213 79-112 (231)
263 PF12825 DUF3818: Domain of un 31.6 2.5E+02 0.0054 33.4 9.9 56 1066-1135 65-120 (341)
264 cd08688 C2_KIAA0528-like C2 do 31.5 3.2E+02 0.0069 26.3 9.2 87 203-303 2-92 (110)
265 cd08405 C2B_Synaptotagmin-7 C2 31.5 2.1E+02 0.0047 28.6 8.3 33 197-229 12-44 (136)
266 cd04029 C2A_SLP-4_5 C2 domain 31.4 2.3E+02 0.0049 28.3 8.3 98 197-304 12-113 (125)
267 cd08620 PI-PLCXDc_like_1 Catal 31.3 47 0.001 38.3 3.8 28 101-128 77-104 (281)
268 cd01443 Cdc25_Acr2p Cdc25 enzy 31.2 1E+02 0.0022 29.9 5.7 23 110-132 57-79 (113)
269 TIGR00634 recN DNA repair prot 31.0 3.9E+02 0.0084 34.0 12.2 25 1048-1072 212-236 (563)
270 cd01528 RHOD_2 Member of the R 30.9 1.5E+02 0.0033 27.9 6.8 76 45-144 5-80 (101)
271 cd08382 C2_Smurf-like C2 domai 30.7 2.8E+02 0.0061 27.3 8.9 28 203-230 3-30 (123)
272 PF00015 MCPsignal: Methyl-acc 30.7 2.7E+02 0.0059 29.8 9.6 14 1086-1099 74-89 (213)
273 KOG2398 Predicted proline-seri 30.5 8.4E+02 0.018 31.5 14.8 22 1142-1163 148-169 (611)
274 KOG2007 Cysteinyl-tRNA synthet 30.5 1.6E+02 0.0035 36.3 8.0 67 1150-1216 383-454 (586)
275 cd07635 BAR_GRAF2 The Bin/Amph 30.3 7.9E+02 0.017 27.2 15.4 24 1036-1059 7-30 (207)
276 cd00280 TRFH Telomeric Repeat 30.1 5E+02 0.011 28.3 10.6 46 1105-1151 55-101 (200)
277 PF06070 Herpes_UL32: Herpesvi 30.1 5.8E+02 0.013 33.7 13.1 63 1146-1208 160-241 (839)
278 cd08680 C2_Kibra C2 domain fou 29.5 2.7E+02 0.0058 28.0 8.4 36 195-230 9-44 (124)
279 cd07603 BAR_ACAPs The Bin/Amph 29.4 5E+02 0.011 28.5 11.1 42 1035-1076 6-52 (200)
280 KOG3433 Protein involved in me 29.2 2E+02 0.0043 30.9 7.4 12 1088-1099 42-53 (203)
281 KOG2391 Vacuolar sorting prote 29.1 1.1E+02 0.0024 35.8 6.0 25 1204-1228 314-340 (365)
282 PF07439 DUF1515: Protein of u 29.0 2.6E+02 0.0056 27.6 7.5 23 1145-1167 6-28 (112)
283 KOG2264 Exostosin EXT1L [Signa 28.6 1.9E+02 0.004 36.0 8.0 33 1178-1210 117-149 (907)
284 cd08521 C2A_SLP C2 domain firs 28.5 2.8E+02 0.006 27.0 8.3 33 198-230 12-45 (123)
285 cd04043 C2_Munc13_fungal C2 do 28.4 4.6E+02 0.01 25.6 10.0 29 202-230 3-31 (126)
286 cd08675 C2B_RasGAP C2 domain s 28.4 2.5E+02 0.0054 28.5 8.2 23 207-230 6-28 (137)
287 cd08392 C2A_SLP-3 C2 domain fi 28.3 2.7E+02 0.0059 28.0 8.3 34 197-230 12-46 (128)
288 PF09325 Vps5: Vps5 C terminal 28.3 8.2E+02 0.018 26.8 13.3 11 1007-1017 19-29 (236)
289 COG3883 Uncharacterized protei 28.1 4.3E+02 0.0093 30.3 10.4 24 1181-1204 79-102 (265)
290 TIGR00309 V_ATPase_subD H(+)-t 28.0 8.4E+02 0.018 26.8 13.3 61 986-1058 3-65 (209)
291 KOG0933 Structural maintenance 28.0 1.3E+03 0.029 31.2 15.7 23 1142-1164 359-381 (1174)
292 PF15642 Tox-ODYAM1: Toxin in 28.0 7.9E+02 0.017 28.0 12.1 16 1084-1099 81-96 (385)
293 cd08373 C2A_Ferlin C2 domain f 28.0 5.9E+02 0.013 25.0 11.3 115 208-341 4-121 (127)
294 cd07613 BAR_Endophilin_A1 The 27.9 5.6E+02 0.012 28.7 11.2 25 1035-1059 4-28 (223)
295 COG3853 TelA Uncharacterized p 27.8 6.7E+02 0.015 30.3 12.3 28 1207-1234 198-227 (386)
296 PF05600 DUF773: Protein of un 27.7 1.6E+02 0.0035 36.9 7.8 34 1198-1235 200-233 (507)
297 TIGR00634 recN DNA repair prot 27.7 3.6E+02 0.0079 34.3 11.2 17 981-997 198-214 (563)
298 PRK15319 AIDA autotransporter- 27.7 88 0.0019 44.1 5.8 57 765-833 1669-1725(2039)
299 PF10475 DUF2450: Protein of u 27.7 1.8E+02 0.0039 33.7 7.8 20 1040-1059 69-88 (291)
300 cd07619 BAR_Rich2 The Bin/Amph 27.4 6.5E+02 0.014 28.6 11.7 10 1069-1078 65-74 (248)
301 KOG1937 Uncharacterized conser 27.3 4.9E+02 0.011 31.9 11.0 48 1010-1057 368-415 (521)
302 cd07592 BAR_Endophilin_A The B 27.3 4.3E+02 0.0094 29.5 10.3 24 1036-1059 5-28 (223)
303 PF12128 DUF3584: Protein of u 27.3 1.8E+03 0.038 31.1 18.4 236 970-1234 762-1014(1201)
304 cd07625 BAR_Vps17p The Bin/Amp 27.3 9.3E+02 0.02 27.1 15.4 50 1180-1234 162-212 (230)
305 COG1579 Zn-ribbon protein, pos 27.1 2.7E+02 0.0059 31.4 8.6 31 1178-1208 92-122 (239)
306 cd08377 C2C_MCTP_PRT C2 domain 27.0 4.6E+02 0.01 25.2 9.6 88 202-304 3-90 (119)
307 cd08389 C2A_Synaptotagmin-14_1 26.9 3.1E+02 0.0067 27.2 8.4 34 197-230 13-46 (124)
308 COG1463 Ttg2C ABC-type transpo 26.8 2.2E+02 0.0047 34.1 8.5 8 1050-1057 144-151 (359)
309 COG1054 Predicted sulfurtransf 26.8 2.5E+02 0.0054 32.6 8.3 102 19-146 92-196 (308)
310 PF15397 DUF4618: Domain of un 26.7 1E+03 0.022 27.3 13.3 22 1032-1053 75-96 (258)
311 KOG0979 Structural maintenance 26.7 1.7E+03 0.038 30.2 16.5 22 1146-1167 338-359 (1072)
312 COG5185 HEC1 Protein involved 26.6 1.3E+03 0.028 28.5 14.4 20 1033-1052 259-278 (622)
313 cd04020 C2B_SLP_1-2-3-4 C2 dom 26.6 4.2E+02 0.0092 27.8 9.7 96 199-304 26-125 (162)
314 smart00503 SynN Syntaxin N-ter 26.4 4.9E+02 0.011 25.1 9.6 31 1175-1205 43-73 (117)
315 cd07600 BAR_Gvp36 The Bin/Amph 26.3 1.9E+02 0.0041 32.7 7.3 10 1070-1079 87-96 (242)
316 cd04038 C2_ArfGAP C2 domain pr 26.2 4.8E+02 0.01 26.9 9.8 84 202-301 4-87 (145)
317 COG3352 FlaC Putative archaeal 26.2 1.9E+02 0.0041 30.2 6.5 71 1141-1211 73-144 (157)
318 cd01448 TST_Repeat_1 Thiosulfa 26.1 1.1E+02 0.0023 30.1 4.8 29 116-146 76-104 (122)
319 TIGR01884 cas_HTH CRISPR locus 25.9 3.4E+02 0.0075 29.5 9.2 42 104-146 72-115 (203)
320 smart00721 BAR BAR domain. 25.9 2.4E+02 0.0052 31.0 8.2 18 1041-1058 37-54 (239)
321 cd01533 4RHOD_Repeat_2 Member 25.7 90 0.002 30.0 4.2 78 43-146 13-90 (109)
322 COG0657 Aes Esterase/lipase [L 25.7 1.2E+02 0.0026 35.1 5.9 81 53-143 84-174 (312)
323 KOG0612 Rho-associated, coiled 25.7 7.2E+02 0.016 34.2 13.1 34 1180-1215 679-712 (1317)
324 PF11559 ADIP: Afadin- and alp 25.6 3.4E+02 0.0075 28.0 8.7 26 1140-1165 66-91 (151)
325 PF10458 Val_tRNA-synt_C: Valy 25.4 1.4E+02 0.0031 26.5 5.0 21 1145-1165 2-22 (66)
326 KOG3565 Cdc42-interacting prot 25.3 8.3E+02 0.018 31.7 13.5 25 1132-1156 174-198 (640)
327 cd08622 PI-PLCXDc_CG14945_like 25.3 65 0.0014 37.1 3.5 27 101-128 80-106 (276)
328 PF05659 RPW8: Arabidopsis bro 25.2 2.2E+02 0.0047 29.7 7.0 83 978-1065 36-128 (147)
329 KOG4250 TANK binding protein k 25.0 1.1E+03 0.023 30.9 14.0 23 1140-1162 553-575 (732)
330 cd08587 PI-PLCXDc_like Catalyt 25.0 62 0.0013 37.3 3.4 30 101-130 92-121 (288)
331 PF04156 IncA: IncA protein; 25.0 2.4E+02 0.0051 30.3 7.7 15 1145-1159 100-114 (191)
332 PRK14157 heat shock protein Gr 25.0 6.6E+02 0.014 28.2 11.0 20 1143-1162 87-106 (227)
333 cd08409 C2B_Synaptotagmin-15 C 24.8 3.6E+02 0.0077 27.3 8.5 92 197-301 12-108 (137)
334 cd04044 C2A_Tricalbin-like C2 24.7 5.6E+02 0.012 24.8 9.8 89 202-304 4-94 (124)
335 PF06160 EzrA: Septation ring 24.6 2.2E+02 0.0047 36.3 8.3 31 1184-1214 131-161 (560)
336 cd07604 BAR_ASAPs The Bin/Amph 24.5 1E+03 0.022 26.5 14.4 43 1035-1077 6-53 (215)
337 PRK14720 transcript cleavage f 24.4 6.4E+02 0.014 34.0 12.6 66 1041-1119 45-111 (906)
338 KOG0976 Rho/Rac1-interacting s 24.4 1.1E+03 0.024 31.0 13.7 15 1064-1078 182-196 (1265)
339 PF13166 AAA_13: AAA domain 24.4 7.4E+02 0.016 32.3 13.5 35 1180-1214 436-473 (712)
340 PF14915 CCDC144C: CCDC144C pr 24.3 1.2E+03 0.026 27.3 12.9 26 1176-1201 180-205 (305)
341 PRK09039 hypothetical protein; 24.3 4E+02 0.0087 31.7 10.0 30 1140-1169 137-166 (343)
342 COG4694 Uncharacterized protei 24.1 5.9E+02 0.013 32.1 11.1 63 1175-1237 436-501 (758)
343 cd08381 C2B_PI3K_class_II C2 d 24.1 6.1E+02 0.013 25.0 9.9 95 199-304 12-110 (122)
344 KOG2525 Folylpolyglutamate syn 24.0 96 0.0021 38.2 4.7 79 99-190 52-136 (496)
345 PRK11637 AmiB activator; Provi 23.9 2.8E+02 0.0061 33.9 8.9 19 1187-1205 108-126 (428)
346 KOG2669 Regulator of nuclear m 23.9 7.7E+02 0.017 29.2 11.7 26 975-1000 3-29 (325)
347 cd01530 Cdc25 Cdc25 phosphatas 23.8 74 0.0016 31.6 3.2 27 116-144 65-91 (121)
348 PF05055 DUF677: Protein of un 23.8 1.3E+03 0.028 27.5 16.7 34 1024-1057 73-106 (336)
349 PF11932 DUF3450: Protein of u 23.6 3.3E+02 0.0071 30.8 8.8 23 1178-1200 73-95 (251)
350 cd07616 BAR_Endophilin_B1 The 23.5 6.3E+02 0.014 28.4 10.6 14 1069-1082 77-90 (229)
351 cd04017 C2D_Ferlin C2 domain f 23.5 4.7E+02 0.01 26.2 9.1 29 203-231 4-32 (135)
352 PF07889 DUF1664: Protein of u 23.5 2.6E+02 0.0055 28.5 6.8 31 1178-1208 92-122 (126)
353 KOG0964 Structural maintenance 23.4 2.5E+02 0.0055 37.3 8.3 68 1092-1163 174-246 (1200)
354 PRK06798 fliD flagellar cappin 23.4 3E+02 0.0065 34.0 8.9 37 1178-1214 400-436 (440)
355 TIGR00996 Mtu_fam_mce virulenc 23.4 2.4E+02 0.0051 32.4 7.8 33 1046-1078 131-163 (291)
356 KOG4302 Microtubule-associated 23.4 9.9E+02 0.021 31.0 13.5 16 1202-1217 187-202 (660)
357 cd04045 C2C_Tricalbin-like C2 23.0 5.1E+02 0.011 25.5 9.1 30 202-231 3-32 (120)
358 TIGR02613 mob_myst_B mobile my 22.9 1.1E+02 0.0024 33.0 4.6 47 101-148 88-146 (186)
359 PRK14143 heat shock protein Gr 22.8 9.4E+02 0.02 27.2 11.9 16 1198-1213 151-166 (238)
360 KOG3824 Huntingtin interacting 22.8 1.7E+02 0.0037 34.0 6.0 48 99-146 333-395 (472)
361 PF02074 Peptidase_M32: Carbox 22.8 1.4E+02 0.0031 37.3 6.0 29 1204-1232 153-181 (494)
362 smart00806 AIP3 Actin interact 22.7 8.5E+02 0.018 29.8 12.0 38 1124-1161 157-194 (426)
363 cd04039 C2_PSD C2 domain prese 22.7 5.8E+02 0.013 24.7 9.2 85 202-301 3-93 (108)
364 PRK11448 hsdR type I restricti 22.5 6.4E+02 0.014 35.0 12.5 21 1061-1081 78-98 (1123)
365 PF15466 DUF4635: Domain of un 22.5 2E+02 0.0043 28.6 5.6 33 1177-1209 93-125 (135)
366 PF05470 eIF-3c_N: Eukaryotic 22.5 2.1E+02 0.0045 36.7 7.4 85 1134-1219 39-138 (595)
367 PF14942 Muted: Organelle biog 22.4 6.5E+02 0.014 26.2 9.8 68 1134-1202 60-131 (145)
368 PF13851 GAS: Growth-arrest sp 22.3 4.4E+02 0.0095 28.9 9.0 57 1173-1231 127-190 (201)
369 cd04032 C2_Perforin C2 domain 22.2 4.8E+02 0.01 26.3 8.7 79 211-304 39-118 (127)
370 PRK14086 dnaA chromosomal repl 22.2 4.7E+02 0.01 33.7 10.4 15 1038-1052 480-494 (617)
371 PHA03332 membrane glycoprotein 22.2 8.7E+02 0.019 32.9 12.5 15 1223-1237 1007-1021(1328)
372 cd04024 C2A_Synaptotagmin-like 22.1 7.4E+02 0.016 24.1 11.5 30 202-231 3-34 (128)
373 PF09731 Mitofilin: Mitochondr 22.1 1.4E+03 0.029 29.2 14.9 79 1035-1118 375-457 (582)
374 KOG4025 Putative apoptosis rel 21.9 4.5E+02 0.0097 27.8 8.2 58 962-1021 54-113 (207)
375 PF03962 Mnd1: Mnd1 family; I 21.6 6.9E+02 0.015 27.1 10.3 77 1086-1166 9-95 (188)
376 PF10158 LOH1CR12: Tumour supp 21.6 3.4E+02 0.0075 27.8 7.4 68 1141-1212 50-117 (131)
377 PF05664 DUF810: Protein of un 21.3 1.4E+03 0.031 29.9 14.6 59 1174-1232 455-524 (677)
378 PF11887 DUF3407: Protein of u 21.1 5.2E+02 0.011 29.6 9.8 16 1083-1098 29-44 (267)
379 PF07174 FAP: Fibronectin-atta 21.1 4.9E+02 0.011 29.8 9.0 77 699-797 34-110 (297)
380 TIGR00996 Mtu_fam_mce virulenc 21.1 9.9E+02 0.022 27.3 12.3 20 1060-1079 166-185 (291)
381 KOG1840 Kinesin light chain [C 21.0 1.7E+03 0.038 28.0 17.5 65 1035-1101 104-170 (508)
382 PF03904 DUF334: Domain of unk 20.9 9.6E+02 0.021 26.9 11.0 10 1181-1190 126-135 (230)
383 TIGR00606 rad50 rad50. This fa 20.9 1.4E+03 0.029 32.5 15.6 271 945-1235 675-967 (1311)
384 PLN02939 transferase, transfer 20.7 9.1E+02 0.02 32.9 12.8 87 1146-1233 382-475 (977)
385 PRK14155 heat shock protein Gr 20.6 8.9E+02 0.019 26.8 10.9 16 1198-1213 99-114 (208)
386 COG4942 Membrane-bound metallo 20.5 5.1E+02 0.011 31.7 9.6 69 1141-1216 60-131 (420)
387 PF11867 DUF3387: Domain of un 20.4 5.4E+02 0.012 30.4 10.1 36 1174-1209 197-232 (335)
388 PF05816 TelA: Toxic anion res 20.3 3.8E+02 0.0083 31.7 8.8 24 1178-1201 126-149 (333)
389 PF06008 Laminin_I: Laminin Do 20.3 9E+02 0.019 27.4 11.5 74 1137-1214 42-115 (264)
390 PF12592 DUF3763: Protein of u 20.2 5.6E+02 0.012 22.4 7.3 52 1143-1194 3-54 (57)
391 cd04026 C2_PKC_alpha_gamma C2 20.1 7.1E+02 0.015 24.6 9.6 31 200-230 13-43 (131)
392 PF05960 DUF885: Bacterial pro 20.1 1.2E+02 0.0026 38.2 4.8 22 962-983 33-54 (549)
393 KOG0977 Nuclear envelope prote 20.0 1.1E+03 0.023 30.1 12.5 20 1032-1051 198-217 (546)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.3e-65 Score=595.47 Aligned_cols=364 Identities=22% Similarity=0.434 Sum_probs=328.1
Q ss_pred ccccccccccccccccc-c-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCC--CCCCCccc
Q 000884 865 RSHQTKKLKPLHWLKLT-R-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPR--GPQSDKVQ 940 (1237)
Q Consensus 865 ~~~~k~klK~lhW~kI~-~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~--~~k~~~i~ 940 (1237)
.-.++..||+++|.+|. + -.++.+|-.++++.. ...--+.+|+..|+.+..... ...++..++. ++|.+...
T Consensus 619 ~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~---en~dlfakL~~~Fatq~k~~k-~~e~~eekkt~~kKk~kel~ 694 (1102)
T KOG1924|consen 619 VYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKL---ENDDLFAKLALKFATQPKVKK-EQEGGEEKKTGTKKKVKELR 694 (1102)
T ss_pred cCCCCCccccCCccccCccccCccceeeecchhhc---cchHHHHHHHHHhhccccccc-cccccccccchhhhhhhhhe
Confidence 34678899999999996 3 358999999875421 111126889999998744322 2222222221 34555677
Q ss_pred ccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHHhcC
Q 000884 941 LIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKV 1020 (1237)
Q Consensus 941 lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~v 1020 (1237)
+||.|.|||++|+|+.|+|+++||+.+|+++|+++|+...|++|++.+|..|-+..|.+++.+.+.|.+.|||...|..|
T Consensus 695 ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~v 774 (1102)
T KOG1924|consen 695 ILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQV 774 (1102)
T ss_pred ecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhh
Q 000884 1021 PRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDT 1100 (1237)
Q Consensus 1021 p~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dt 1100 (1237)
+++.-||.+++||.+|.+.|++|+..+..+..||+|||+|++|.++|++||.+|||||.|+...+|+||.|+.|+||.||
T Consensus 775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHH
Q 000884 1101 RARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKIL 1180 (1237)
Q Consensus 1101 Ks~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l 1180 (1237)
|+.|+|+||||||++++++++|++++|.+||.+|+.|+||+.+.|+..++.+++.+.+++..+.....-+...|.|.++|
T Consensus 855 KsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM 934 (1102)
T KOG1924|consen 855 KSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKM 934 (1102)
T ss_pred cccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988876655444578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHh
Q 000884 1181 REFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1181 ~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~ 1232 (1237)
+.|.++|.+++..|..+..++++.|++|-+||.-|+++.++|+||.++..|-
T Consensus 935 ~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 935 TSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998883
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=6.3e-61 Score=572.95 Aligned_cols=362 Identities=31% Similarity=0.581 Sum_probs=329.3
Q ss_pred ccccccccccccccccc-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCC--CCCCCCCccccc
Q 000884 866 SHQTKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRV--PRGPQSDKVQLI 942 (1237)
Q Consensus 866 ~~~k~klK~lhW~kI~~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~--s~~~k~~~i~lL 942 (1237)
..|+.+||+|||++|.. ++.+|||++++.. ..+|+++||++|+.+.......+.....+ ...++.+.++||
T Consensus 4 ~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~il 77 (432)
T smart00498 4 PKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKIL 77 (432)
T ss_pred CCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCccccccccccccccccccceEee
Confidence 36788999999999974 6889999998743 27899999999998654432111111111 112456779999
Q ss_pred CcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCC-ccccChhHHHHHHHhcCc
Q 000884 943 DHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGD-KEKLGKCEQFFLELMKVP 1021 (1237)
Q Consensus 943 D~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~-~~~L~~~EqF~~~l~~vp 1021 (1237)
|.||+|||+|+|++|+++.++|++||+++|...|+.|.|+.|++++||.||++.|++|.|+ .+.|+++|||+++|++||
T Consensus 78 d~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip 157 (432)
T smart00498 78 DPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIP 157 (432)
T ss_pred chhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999987 789999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhc
Q 000884 1022 RVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTR 1101 (1237)
Q Consensus 1022 ~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtK 1101 (1237)
++.+||++|+|+.+|.+.+.+|+..|+.+..||++|++|++|+.||++||++|||||+|+.||+|.||+|++|.||.|+|
T Consensus 158 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~K 237 (432)
T smart00498 158 YLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVK 237 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHH
Q 000884 1102 ARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILR 1181 (1237)
Q Consensus 1102 s~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~ 1181 (1237)
++|+++||||||++++.+++|++++|.+||..|+.|++++ +.|.++++++.++++.++.++.........+|.|..+|.
T Consensus 238 s~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~ 316 (432)
T smart00498 238 SADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMK 316 (432)
T ss_pred ccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999998766544333344689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1182 EFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1182 ~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
+|+..|..++..|+..+.++.+.|.+++.|||||++....++||+.|.+|++.
T Consensus 317 ~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~ 369 (432)
T smart00498 317 PFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKE 369 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999864
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=1.2e-60 Score=562.43 Aligned_cols=364 Identities=38% Similarity=0.672 Sum_probs=316.7
Q ss_pred cccccccccccccccccc-cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000884 865 RSHQTKKLKPLHWLKLTR-AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSDKVQLID 943 (1237)
Q Consensus 865 ~~~~k~klK~lhW~kI~~-~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~~~k~~~i~lLD 943 (1237)
...++.+||+|||++|.. ...+|||+++...+. ...+|+++||++|+.+.......+ .......+++.+++||
T Consensus 4 ~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~---~~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iLd 77 (370)
T PF02181_consen 4 KPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEF---NIDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISILD 77 (370)
T ss_dssp ----SS-B------EESSGGCTTSCCCCTCCHHH---HCTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS-
T ss_pred CCCCCCCCcCCCceecCcccccCCccccCccccc---chhhhHHHHHHHhccccccccccc---cccccccccccccccc
Confidence 346789999999999974 788999999875421 127899999999998765533111 0111246777899999
Q ss_pred cccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHHhcCccH
Q 000884 944 HRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRV 1023 (1237)
Q Consensus 944 ~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~l 1023 (1237)
.+|++||+|+|++++++.++|+++|++||...|+.|.|+.|++++||.||+++|++|.++.+.|+++|+|+++|++||++
T Consensus 78 ~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~ 157 (370)
T PF02181_consen 78 PKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRL 157 (370)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTH
T ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhccc
Q 000884 1024 ESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRAR 1103 (1237)
Q Consensus 1024 ~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~ 1103 (1237)
++||++|.|+.+|.++++++...|+.+..||++|++|.+|+++|++||++|||||+|+.||+|.||+|++|.||.++|++
T Consensus 158 ~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~ 237 (370)
T PF02181_consen 158 KERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSN 237 (370)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHH
Q 000884 1104 NNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREF 1183 (1237)
Q Consensus 1104 d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~F 1183 (1237)
|+++||||||++.+.+++|+++.|.+||..|..|+++++++|.+++++|++++++++.++.....+....+.|..+|+.|
T Consensus 238 d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f 317 (370)
T PF02181_consen 238 DNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEF 317 (370)
T ss_dssp TTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHH
T ss_pred cCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777555678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1184 LRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1184 l~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
++.++.++..|++.+.++++.+++++.|||||++.+..++||.+|.+|++.
T Consensus 318 ~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~ 368 (370)
T PF02181_consen 318 LEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDM 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999863
No 4
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-54 Score=505.44 Aligned_cols=303 Identities=24% Similarity=0.367 Sum_probs=249.0
Q ss_pred hhhhccCCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCc
Q 000884 4 LRRLFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDI 83 (1237)
Q Consensus 4 ~rr~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~ 83 (1237)
.||+.+++.||||+|||+||||| +||++++ |+.|||+++||++||+++|++| |+|||||.|+.| +..+|++
T Consensus 3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~y-----d~~~f~g 73 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLY-----DPSRFHG 73 (434)
T ss_pred cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccC-----Ccccccc
Confidence 48899999999999999999999 6999999 8899999999999999999996 999999965533 4688999
Q ss_pred eEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhch
Q 000884 84 TIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAP 163 (1237)
Q Consensus 84 ~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~ 163 (1237)
+|..|+|+|||+| +|++|+.||++|++||++|++||||||||+||||| |+||||||+|++.+.++++||++|.-++
T Consensus 74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrt-g~~icA~L~~~~~~~ta~eald~~~~kR- 149 (434)
T KOG2283|consen 74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRT-GVMICAYLIYSGISATAEEALDYFNEKR- 149 (434)
T ss_pred ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcce-EEEEeHHHHhhhhcCCHHHHHHHHhhhh-
Confidence 9999999999999 99999999999999999999999999999999997 9999999999999999999999985332
Q ss_pred hhhhccCCCCCCCchHHHHHHHHHHhhcCCCCCCCCc--eeEEEeEEeeccCCcCC-CCCcceEEEEEecCCCcccCCCC
Q 000884 164 RELLQLLSPLNPVPSQLRYLQYVSRRNVVSEWPPLDR--ALTLDCVILRSIPNFDG-QGGCRPIFRIYGQDPFVANDRSA 240 (1237)
Q Consensus 164 ~~~~~gv~~l~~~PSQ~RYv~Yf~~ll~~~~~~p~~~--~l~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~ 240 (1237)
+..+.+.++++|||+|||+||++++.....+++.+ +++|+.++++.||++.. ..||++++.||+..
T Consensus 150 --~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k--------- 218 (434)
T KOG2283|consen 150 --FDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGK--------- 218 (434)
T ss_pred --ccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecc---------
Confidence 33332333499999999999999654444556776 99999999999999544 48999999999864
Q ss_pred cEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEecCCccc-------ccceEEEEEeccccccC--CeEEee
Q 000884 241 KVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECISLNDDLE-------REEMMFRVVFNTAFIRS--NILMLN 311 (1237)
Q Consensus 241 ~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h~~~~~~-------~~~~~Fr~~FnT~FI~~--n~l~~~ 311 (1237)
+.+|+..... .++.|.. + ..|+|++++.++ ++|||.+...+ .+...|.++|+|+++.. ..+.+.
T Consensus 219 ~~~~~~~s~~-~~~~~~~-~-g~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T KOG2283|consen 219 KKVYSFSSDG-IMRLGEL-D-GKIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFF 291 (434)
T ss_pred eeeEEeccCC-ccccccc-c-cceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeecc
Confidence 5678877666 7777776 4 458898888887 89999764332 36678888999988874 455666
Q ss_pred cccCcccccCCCCCCCCcEEEEEEeec
Q 000884 312 LDEVDILWNAKELFPKEFRAEILFSEM 338 (1237)
Q Consensus 312 k~eLD~~~~~k~~fp~dF~vel~F~~~ 338 (1237)
..+++... ....+..-|.+.+.-...
T Consensus 292 ~~~~~~~~-~~e~~~~~~~~~~~~~~~ 317 (434)
T KOG2283|consen 292 QADLPIYV-SNEFVFNFFQVSLEVENT 317 (434)
T ss_pred cccCCccc-cccccccccceeeecccC
Confidence 66666532 234556666666655444
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.9e-47 Score=446.48 Aligned_cols=361 Identities=29% Similarity=0.449 Sum_probs=319.4
Q ss_pred cccccccccccccccccccccc-ccccCcccccccccCccccCCCcChhhHHHHHhcc-CCCCCCCCCCCCCCCCCCCCC
Q 000884 860 RTISSRSHQTKKLKPLHWLKLT-RAVQGSLWAEAQKSGEASKAPEIDMSELENLFSAT-IPNSEKGGKPNQRVPRGPQSD 937 (1237)
Q Consensus 860 ~~~~~~~~~k~klK~lhW~kI~-~~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~-~~~~~~~k~~~~~~s~~~k~~ 937 (1237)
.++....+.+.++--++|..+. .++++|+|.++. |+.+...+|++++|+.|..- .....-.....+.+...+...
T Consensus 359 ~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~---De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~q 435 (830)
T KOG1923|consen 359 ATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELN---DEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQ 435 (830)
T ss_pred HhhcCCCcccccCCCccccccCccccccchhhhhh---HHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhh
Confidence 4556667789999999999997 478899999874 55667789999999999872 221110000111111234467
Q ss_pred cccccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccC---CccccChhHHHH
Q 000884 938 KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTG---DKEKLGKCEQFF 1014 (1237)
Q Consensus 938 ~i~lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~---~~~~L~~~EqF~ 1014 (1237)
+++++|.+|+.|++|.++ +.+..++|+.||..+|-..|..+.+++|.+++||++|.+.+++|.- ..+.|.+.++|+
T Consensus 436 k~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFm 514 (830)
T KOG1923|consen 436 KRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFM 514 (830)
T ss_pred hhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhh
Confidence 889999999999999999 9999999999999999999999999999999999999999999864 346899999999
Q ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhh
Q 000884 1015 LELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSL 1094 (1237)
Q Consensus 1015 ~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL 1094 (1237)
+.+.+|.|+++||..|.|+.+|.+.+.-+..++..+..|...+++|++||.||++||++|||||.+. ||.++||+|.+|
T Consensus 515 l~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqsl 593 (830)
T KOG1923|consen 515 LSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSL 593 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred hhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 000884 1095 LKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISE 1174 (1237)
Q Consensus 1095 ~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d 1174 (1237)
.-|.++|++|.++|||||++..++++++++..|.+||.-++.|+.++++.+..||.+|.+|+...++|.+....+
T Consensus 594 D~ll~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~----- 668 (830)
T KOG1923|consen 594 DSLLDTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLD----- 668 (830)
T ss_pred HHHhhccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1175 NFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
..|.+|++..+.++++|++.++.+...|+.++.||||.++..+--.||..|..|..
T Consensus 669 ---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~ 724 (830)
T KOG1923|consen 669 ---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVR 724 (830)
T ss_pred ---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHH
Confidence 78999999999999999999999999999999999999988775556655555543
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.8e-41 Score=375.52 Aligned_cols=345 Identities=23% Similarity=0.417 Sum_probs=298.5
Q ss_pred cccccccccccccccc---------cccCcccccccccCccccCCCcChhhHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 000884 867 HQTKKLKPLHWLKLTR---------AVQGSLWAEAQKSGEASKAPEIDMSELENLFSATIPNSEKGGKPNQRVPRGPQSD 937 (1237)
Q Consensus 867 ~~k~klK~lhW~kI~~---------~~~~TiW~~l~~~~~~~~~~~iD~~eLE~lF~~~~~~~~~~k~~~~~~s~~~k~~ 937 (1237)
..+.++-+|||..++- ...+|+|+.++. ..+|...||.||..+..+..-.|+.+. -+..
T Consensus 279 ~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~-------~~~D~~r~~~LFEsr~~~~~P~KK~~E-----~r~~ 346 (817)
T KOG1925|consen 279 PTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP-------VSVDTARLEHLFESRAKEVLPSKKAGE-----GRRT 346 (817)
T ss_pred cccCceeEEEeecceecCCCCCccccccchhhhccCc-------ceecHHHHHHHHHHhhhhhccchhhcc-----ccee
Confidence 3456677899998751 136899999863 358999999999987765442333221 2345
Q ss_pred cccccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhccc--CCccccChhHHHHH
Q 000884 938 KVQLIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYT--GDKEKLGKCEQFFL 1015 (1237)
Q Consensus 938 ~i~lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~--~~~~~L~~~EqF~~ 1015 (1237)
..++||.||.|.|.|.|.++. ++..|..||+++|+.+++.|.|+.|++++||+||+++|..-. +....||.+|||++
T Consensus 347 ~~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLL 425 (817)
T KOG1925|consen 347 MTTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLL 425 (817)
T ss_pred eeeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 678999999999999999997 788899999999999999999999999999999999998743 23347999999999
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhh
Q 000884 1016 ELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLL 1095 (1237)
Q Consensus 1016 ~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~ 1095 (1237)
.|..|+.+.+||++|.|+.+|++.-.||.+-|-.+..+++++.+++.|+-+|.++|+||||||+. +++||.|+.|.
T Consensus 426 tLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLe 501 (817)
T KOG1925|consen 426 TLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLE 501 (817)
T ss_pred HHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999975 57899999999
Q ss_pred hhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHH---HhhcccCCCcc
Q 000884 1096 KLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQ---ELSMSENDGAI 1172 (1237)
Q Consensus 1096 KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~---el~~s~~d~~~ 1172 (1237)
|..++|+...|.+|||+||..+.+.|+|-.|++.|+-.+...+|||+++|.+.+..|++..+.-=. .+.+.+ .
T Consensus 502 KvsEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe----~ 577 (817)
T KOG1925|consen 502 KVSEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHE----L 577 (817)
T ss_pred hchhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhh----c
Confidence 999999999999999999999999999999999999999999999999999988888776553222 222222 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---CCHHHHHHHHHHHh
Q 000884 1173 SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR---CPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1173 ~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~---~~~e~~~s~l~~F~ 1232 (1237)
....+..|..|++++.++|..|+..|.++.+.|..++.|||..+.. ....+||.++-.|+
T Consensus 578 ~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFa 640 (817)
T KOG1925|consen 578 APALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFA 640 (817)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999987653 56889999999886
No 7
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.2e-39 Score=416.18 Aligned_cols=363 Identities=37% Similarity=0.580 Sum_probs=317.3
Q ss_pred cccccccccccccccc-ccccCcccccccccCccccCCCcCh---hhHHHHHhccCCCCC-CCCCCCCCCCCCCCCCccc
Q 000884 866 SHQTKKLKPLHWLKLT-RAVQGSLWAEAQKSGEASKAPEIDM---SELENLFSATIPNSE-KGGKPNQRVPRGPQSDKVQ 940 (1237)
Q Consensus 866 ~~~k~klK~lhW~kI~-~~~~~TiW~~l~~~~~~~~~~~iD~---~eLE~lF~~~~~~~~-~~k~~~~~~s~~~k~~~i~ 940 (1237)
..++.+||++||+++. ......+|.++.... ..+|. +.+|.+|........ ..+..+....+......+.
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSS-----SLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLK 464 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCC-----cCCCCCcccccccchhhhhcccCCCCCCCcccccccccccccc
Confidence 5678999999999996 467889999987542 23343 888999977643322 1111122221122225688
Q ss_pred ccCcccccccccccccCCCChHHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHH-Hhc
Q 000884 941 LIDHRRAYNCEIMLSKVKVPLPELMRSVLALEDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLE-LMK 1019 (1237)
Q Consensus 941 lLD~kRa~Ni~I~L~klk~~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~-l~~ 1019 (1237)
++|.++++|++|+|..+++..+++..+|+.+|+..+..++|++|.+++|+++|...++.|.++...|+.+|+|+.+ +..
T Consensus 465 v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ 544 (833)
T KOG1922|consen 465 VLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSG 544 (833)
T ss_pred ccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 567
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhh
Q 000884 1020 VPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTD 1099 (1237)
Q Consensus 1020 vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~d 1099 (1237)
|+.+..|+++++|+..|...+..+...+..+..||++++++.+|.+++++||..||+||.|+.||+|+||+|++|.||.|
T Consensus 545 ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d 624 (833)
T KOG1922|consen 545 IPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSD 624 (833)
T ss_pred chHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCccchh-HHHHHHHhhcCc---------------ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1100 TRARNNKMTLM-HYLCKVLADKLP---------------ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQEL 1163 (1237)
Q Consensus 1100 tKs~d~k~tLL-hylv~~l~~~~p---------------ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el 1163 (1237)
+|+.++++++| |++.++++.... .+.+|.+||..++.|++++++.+.+++.+|.++++++++++
T Consensus 625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l 704 (833)
T KOG1922|consen 625 VKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKREL 704 (833)
T ss_pred hhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999996655 556666655543 67899999999999999999999999999999999999999
Q ss_pred h-cccCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCCHHHHHHHHHHHhh
Q 000884 1164 S-MSEND-GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDP-ARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1164 ~-~s~~d-~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp-~~~~~e~~~s~l~~F~d 1233 (1237)
. ++..+ +...+.|.++|.+|+..|+.++..|..++.++...++++++|||+++ ....++++|.++.+|+.
T Consensus 705 ~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~ 777 (833)
T KOG1922|consen 705 PTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLR 777 (833)
T ss_pred hhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHH
Confidence 6 66555 55678999999999999999999999999999999999999999999 57889999988888875
No 8
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.94 E-value=3.9e-26 Score=231.09 Aligned_cols=130 Identities=36% Similarity=0.651 Sum_probs=108.6
Q ss_pred CCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeE
Q 000884 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVV 277 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~ 277 (1237)
+.+++.|++|+|++||.|+.++|||||++||+++ +.+|++...+...+.|.+.. ..|.++.++.|+|||+
T Consensus 2 ~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV~ 71 (134)
T PF10409_consen 2 PPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDVL 71 (134)
T ss_dssp S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEEE
T ss_pred CCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCEE
Confidence 5689999999999999998889999999999975 56777666666666664444 5677887899999999
Q ss_pred EEEEecCCcccccceEEEEEecccccc--CCeEEeecccCcccccC-CCCCCCCcEEEEEEee
Q 000884 278 LECISLNDDLEREEMMFRVVFNTAFIR--SNILMLNLDEVDILWNA-KELFPKEFRAEILFSE 337 (1237)
Q Consensus 278 i~~~h~~~~~~~~~~~Fr~~FnT~FI~--~n~l~~~k~eLD~~~~~-k~~fp~dF~vel~F~~ 337 (1237)
|+|||.+.....+++||||||||+||. ++.|+|+|+|||+++++ .++|++||+|||+|++
T Consensus 72 i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 72 IKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred EEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 999999865667889999999999999 99999999999999875 3899999999999986
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.65 E-value=2.5e-15 Score=157.37 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=117.4
Q ss_pred CCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCC
Q 000884 12 PPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQ 91 (1237)
Q Consensus 12 ~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~ 91 (1237)
+|-.++||+.|+|+|. -|.+.. +.+-++.|+..+= ..|.|+|++.|+.. .+...+..+.++|+.
T Consensus 7 ~~~~~~~~~~r~~~~~--~P~~~~--------~~~~l~~L~~~gI---~~Iv~l~~~~~~~~---~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLILD--APSPSN--------LPLYIKELQRYNV---THLVRVCGPTYDAE---LLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEec--CCCccc--------HHHHHHHHHhCCC---eEEEecCCCCCCHH---HHHHCCCEEEecCCC
Confidence 4567999999999995 565542 2233466666543 56999998766432 244568889999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHc--CCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhcc
Q 000884 92 YEGCPLLTMEVIHHFLRSTESWLSL--GQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQL 169 (1237)
Q Consensus 92 d~~~P~p~l~~l~~~~~~~~~wL~~--d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~g 169 (1237)
|+++| +.+.+..|++.+++.+.. ..++.|+|||.+|.||+ |+++||||+..+.+ +.++|+.++.++++ .
T Consensus 71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRS-gt~~a~yL~~~~~~-s~~eAi~~vr~~R~-~---- 141 (166)
T PTZ00242 71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRA-PILVALALVEYGGM-EPLDAVGFVREKRK-G---- 141 (166)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCC-C----
Confidence 98887 888899999999998876 67899999999999996 99999999998877 67889999854443 1
Q ss_pred CCCCCCCchHHHHHHHHHHhhc
Q 000884 170 LSPLNPVPSQLRYLQYVSRRNV 191 (1237)
Q Consensus 170 v~~l~~~PSQ~RYv~Yf~~ll~ 191 (1237)
.+ ...|++||+.|.+.+.
T Consensus 142 --~i--~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 142 --AI--NQTQLQFLKKYKPRKK 159 (166)
T ss_pred --Cc--hHHHHHHHHHHHHHhc
Confidence 12 4789999999987554
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.47 E-value=3.9e-13 Score=145.48 Aligned_cols=144 Identities=11% Similarity=0.165 Sum_probs=106.1
Q ss_pred eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884 16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95 (1237)
Q Consensus 16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~ 95 (1237)
+.|-.=|+|+|+ -|.... +- .-+..|+..+- ..|..+|++.|+.. .+...+..+.++||.|+++
T Consensus 87 ie~~~~rfLi~~--~P~~~~----~~----~yl~eLk~~gV---~~lVrlcE~~Yd~~---~~~~~GI~~~~lpipDg~a 150 (241)
T PTZ00393 87 IEHGKIKILILD--APTNDL----LP----LYIKEMKNYNV---TDLVRTCERTYNDG---EITSAGINVHELIFPDGDA 150 (241)
T ss_pred hccCceeEEEeC--CCCHHH----HH----HHHHHHHHcCC---CEEEECCCCCCCHH---HHHHcCCeEEEeecCCCCC
Confidence 334445899995 565432 22 22355555543 45888999877522 3456788999999999998
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCC
Q 000884 96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNP 175 (1237)
Q Consensus 96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~ 175 (1237)
| +.+.|.+|+..++..+.. +..|+|||+||.||| |+|+||||+..| -+.++|++++...++. .+
T Consensus 151 P--s~~~i~~~l~~i~~~l~~--g~~VaVHC~AGlGRT-Gtl~AayLI~~G--mspeeAI~~VR~~RPg-------AI-- 214 (241)
T PTZ00393 151 P--TVDIVSNWLTIVNNVIKN--NRAVAVHCVAGLGRA-PVLASIVLIEFG--MDPIDAIVFIRDRRKG-------AI-- 214 (241)
T ss_pred C--CHHHHHHHHHHHHHHHhc--CCeEEEECCCCCCHH-HHHHHHHHHHcC--CCHHHHHHHHHHHCCC-------CC--
Confidence 8 899999999998888754 468999999999996 999999999865 3788899999554431 22
Q ss_pred CchHHHHHHHHHHhhc
Q 000884 176 VPSQLRYLQYVSRRNV 191 (1237)
Q Consensus 176 ~PSQ~RYv~Yf~~ll~ 191 (1237)
...|++||.-|.....
T Consensus 215 n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 215 NKRQLQFLKAYKKKKK 230 (241)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 3589999998887543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.36 E-value=5.9e-12 Score=131.58 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=113.3
Q ss_pred CCCCCeeeeeCc-EEEeeCC-CCCCCcchhhhh-cCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEe
Q 000884 11 KPPDGLLEISER-VYVFNCC-FTTDAWEEEDYK-KYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMD 87 (1237)
Q Consensus 11 ~~~lDLtYIT~R-Iiam~~~-fPa~~~~e~~YR-n~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~ 87 (1237)
=...|.++|++. +|++... +.+-|+ |..|- +-...+..+|+.+.- =.|+-|.++-|+.. .+.+-+..-.|
T Consensus 48 ve~gdfnwI~p~~~i~f~~p~~~s~gi-~~~f~~~~~~~~~~~~~~~~v---~s~vrln~~~yd~~---~f~~~Gi~h~~ 120 (225)
T KOG1720|consen 48 VENGDFNWIIPDRFIAFAGPHLKSRGI-ESGFPLHLPQPYIQYFKNNNV---TSIVRLNKRLYDAK---RFTDAGIDHHD 120 (225)
T ss_pred cCCCCcceeccchhhhhcCccccccch-hhcccccCChhHHHHhhhccc---ceEEEcCCCCCChH---HhcccCceeee
Confidence 356899999987 5665210 223355 66666 444455667772221 35777777777632 34556677788
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhh
Q 000884 88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELL 167 (1237)
Q Consensus 88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~ 167 (1237)
++|.|..+| .++.+.+|++.++.-++ ...++|||+||-||| |+||||||||...+ ++.+|++.++..|+ +-
T Consensus 121 l~f~Dg~tP--~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGRT-G~liAc~lmy~~g~-ta~eaI~~lR~~Rp-G~- 191 (225)
T KOG1720|consen 121 LFFADGSTP--TDAIVKEFVKIVENAEK---GGKIAVHCKAGLGRT-GTLIACYLMYEYGM-TAGEAIAWLRICRP-GA- 191 (225)
T ss_pred eecCCCCCC--CHHHHHHHHHHHHHHHh---cCeEEEEeccCCCch-hHHHHHHHHHHhCC-CHHHHHHHHHhcCC-cc-
Confidence 899999998 89999999999999887 478999999999997 99999999999655 55569998844333 22
Q ss_pred ccCCCCCCCchHHHHHHHHHHh
Q 000884 168 QLLSPLNPVPSQLRYLQYVSRR 189 (1237)
Q Consensus 168 ~gv~~l~~~PSQ~RYv~Yf~~l 189 (1237)
+ -.|-|.-|+.-|..+
T Consensus 192 -----V-~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 192 -----V-IGPQQHKLLHKQRDL 207 (225)
T ss_pred -----c-cCHHHHHHHHHHHHH
Confidence 2 578899888877763
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=99.31 E-value=1.9e-09 Score=141.99 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Q 000884 1045 SSLNVVNSAAEQVRNSAKLRRIMQTILSL 1073 (1237)
Q Consensus 1045 ~~l~~v~~A~~el~~S~~L~~lL~~IL~l 1073 (1237)
..|..+.+||+.|+. .|+.--.+++..
T Consensus 3109 salAlLi~ACr~i~r--~lr~TR~~L~~~ 3135 (3151)
T PHA03247 3109 SALAVLIEACRRIRR--QLRRTRHALLDR 3135 (3151)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhh
Confidence 445666667766654 444444444443
No 13
>PHA03247 large tegument protein UL36; Provisional
Probab=99.24 E-value=5.5e-09 Score=137.75 Aligned_cols=11 Identities=0% Similarity=0.072 Sum_probs=5.8
Q ss_pred ccCCeEEEEEe
Q 000884 272 IQGDVVLECIS 282 (1237)
Q Consensus 272 v~GDV~i~~~h 282 (1237)
+.|.+.|.|..
T Consensus 2131 ~~s~l~Vn~L~ 2141 (3151)
T PHA03247 2131 AGSILFVQRLT 2141 (3151)
T ss_pred hhhhhhheecC
Confidence 45555555553
No 14
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=9.2e-10 Score=131.42 Aligned_cols=135 Identities=22% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhh
Q 000884 1027 LRVFSFKIQFHTQVSDLRS------SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDT 1100 (1237)
Q Consensus 1027 L~~l~fk~~f~~~v~dl~~------~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dt 1100 (1237)
-.+|.|.+.|..++.|.+. -|..+..-|++ ++.++|...+.+... +.. .|.+|.-| .|-.
T Consensus 838 a~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~-----kypd~l~F~ddl~hv-~ka-Srvnad~i-----kK~~-- 903 (1102)
T KOG1924|consen 838 AQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEE-----KYPDILKFPDDLEHV-EKA-SRVNADEI-----KKNL-- 903 (1102)
T ss_pred chhhccchHHHHhhccccccchhhHHHHHHHHHHHH-----hChhhhcchhhHHHH-Hhh-ccccHHHH-----HHHH--
Confidence 3577788888887776652 23333333332 566666666554432 211 23333333 2210
Q ss_pred cccCCccchhHHHHHHHhh---cCc----ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 000884 1101 RARNNKMTLMHYLCKVLAD---KLP----ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAIS 1173 (1237)
Q Consensus 1101 Ks~d~k~tLLhylv~~l~~---~~p----ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~ 1173 (1237)
-++..-++.++. .++ +-..|.+.+..+.+-++-+++.|..--..+++.++.+...+....+.- .-
T Consensus 904 -------~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kky-sm 975 (1102)
T KOG1924|consen 904 -------QQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKY-SM 975 (1102)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccC-cH
Confidence 112222222221 111 223466777777777777888777766777777777766654322211 12
Q ss_pred hhHHHHHHHH
Q 000884 1174 ENFSKILREF 1183 (1237)
Q Consensus 1174 d~F~~~l~~F 1183 (1237)
+.|+.-++.|
T Consensus 976 EEFFaDi~tF 985 (1102)
T KOG1924|consen 976 EEFFADIRTF 985 (1102)
T ss_pred HHHHHHHHHH
Confidence 4454444444
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.14 E-value=1.3e-10 Score=119.25 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=78.2
Q ss_pred eCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCc----ch-hhhhccccccCceEEeCCCCCCC
Q 000884 20 SERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEE----TK-SLMANVLSEFDITIMDYPRQYEG 94 (1237)
Q Consensus 20 T~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~----~~-s~~~~~~s~~~~~V~~yP~~d~~ 94 (1237)
+.++... ..|+-.+ . .+|.++..=+..|+...- =.|+-|+++. |+ ..+...+..+++++.+||+.|.+
T Consensus 40 ~~~Lglt--~~PG~k~-~-d~~RdL~~DL~~Lk~~G~---~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~ 112 (168)
T PF05706_consen 40 SGFLGLT--FLPGCKF-K-DWRRDLQADLERLKDWGA---QDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS 112 (168)
T ss_dssp SSEEEEE--S-TT-EE-T-TEEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred cceeeee--cCCCccc-c-cccchHHHHHHHHHHCCC---CEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence 3455443 5787665 3 455555555666776543 3467787665 11 23344556688999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHH
Q 000884 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTL 155 (1237)
Q Consensus 95 ~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al 155 (1237)
+| .++.+..++..+..+|.++ +.|+|||++|.||| |+|+||+|+..+...+.++|+
T Consensus 113 aP--d~~~~~~i~~eL~~~L~~g--~~V~vHC~GGlGRt-GlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 113 AP--DFAAAWQILEELAARLENG--RKVLVHCRGGLGRT-GLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -----HHHHHHHHHHHHHHHHTT----EEEE-SSSSSHH-HHHHHHHHHHH-SSS-HHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHcC--CEEEEECCCCCCHH-HHHHHHHHHHHcCCCChhhcC
Confidence 98 7898999999999999986 67899999999997 999999999999888888875
No 16
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.06 E-value=2e-09 Score=109.41 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=92.5
Q ss_pred eeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCC
Q 000884 17 LEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP 96 (1237)
Q Consensus 17 tYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P 96 (1237)
+.|+++|++- ++|+..- ..+|....= -.|.||+++.... ...+.+..++|..|++..
T Consensus 2 ~~I~~~l~~G--~~~~~~~------------~~~l~~~gi---~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLG--SYSSALN------------LALLKKLGI---THVINVTNEVPNL------NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEEC--ChhHcCC------------HHHHHHcCC---CEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence 5789998887 5665321 345554422 4699999886421 235667888999885432
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCC
Q 000884 97 LLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPV 176 (1237)
Q Consensus 97 ~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~ 176 (1237)
...+.+..+++.++.... .+..|+|||++|.+|+ |++++|||++...+ +.++|++++.++++ .. .+.
T Consensus 59 -~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS-~~v~~~yl~~~~~~-~~~~A~~~v~~~R~-~~-------~p~ 125 (138)
T smart00195 59 -KISPYFPEAVEFIEDAEK--KGGKVLVHCQAGVSRS-ATLIIAYLMKYRNL-SLNDAYDFVKDRRP-II-------SPN 125 (138)
T ss_pred -ChHHHHHHHHHHHHHHhc--CCCeEEEECCCCCchH-HHHHHHHHHHHhCC-CHHHHHHHHHHHCC-cc-------CCC
Confidence 133555555555555543 3467999999999995 99999999998877 57779999844332 11 256
Q ss_pred chHHHHHHHHHH
Q 000884 177 PSQLRYLQYVSR 188 (1237)
Q Consensus 177 PSQ~RYv~Yf~~ 188 (1237)
+.|++-|.-|++
T Consensus 126 ~~~~~qL~~~e~ 137 (138)
T smart00195 126 FGFLRQLIEYER 137 (138)
T ss_pred HhHHHHHHHHhh
Confidence 788888887764
No 17
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.95 E-value=3.4e-09 Score=112.96 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=77.9
Q ss_pred ccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHH
Q 000884 80 EFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIY 159 (1237)
Q Consensus 80 ~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~ 159 (1237)
..+..+.++|+.|++.| .++.+.+++..|++-++.+. .|||||.+|.||| ||++|||||+.+.+...++++.+..
T Consensus 70 ~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~--kVvVHC~~GigRS-gtviaA~lm~~~~~~~~~~~i~~~~ 144 (180)
T COG2453 70 NDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGK--KVVVHCQGGIGRS-GTVIAAYLMLYGGLSLADEAIAVKR 144 (180)
T ss_pred cCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCC--eEEEEcCCCCchH-HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34667888999999998 78999999998888887764 8999999999996 9999999999999999998988764
Q ss_pred HhchhhhhccCCCCCCCchHHHHHHHHHHh
Q 000884 160 RQAPRELLQLLSPLNPVPSQLRYLQYVSRR 189 (1237)
Q Consensus 160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~l 189 (1237)
++++ + .+ ....|.+|...+...
T Consensus 145 ~~r~-~---~v----~~~~q~~~~~e~~~~ 166 (180)
T COG2453 145 RRRP-G---AV----VTEIQHLFELEQELF 166 (180)
T ss_pred hcCC-c---cc----ccHHHHHHHHHHHHH
Confidence 4332 1 11 577777777766643
No 18
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.90 E-value=3.9e-09 Score=106.47 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=85.4
Q ss_pred HHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEec
Q 000884 48 IGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCE 127 (1237)
Q Consensus 48 ~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk 127 (1237)
..+|....= =.|.|++.+..... .....+....++|..|+... +..+.+..+++.|+.+...+ ..|+|||.
T Consensus 11 ~~~l~~~~I---~~Vin~~~~~~~~~---~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~--~~VlVHC~ 81 (133)
T PF00782_consen 11 IAFLKNLGI---THVINLQEECPNPY---FYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEG--GKVLVHCK 81 (133)
T ss_dssp HHHHHHTTE---EEEEECSSSSSTSH---HHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred HHHHHHCCC---CEEEEccCCCcCch---hcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhccc--ceeEEEeC
Confidence 455555532 35889998764311 12345566777887773332 25677777888888876544 67999999
Q ss_pred cCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884 128 RGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR 188 (1237)
Q Consensus 128 ~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~ 188 (1237)
+|.+|+ |+++|||||+.+.+ +.++|++++..+++ .. +..+.|+++|.-|++
T Consensus 82 ~G~~RS-~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 82 AGLSRS-GAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSSHH-HHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred CCcccc-hHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence 999995 99999999998888 77789999854442 21 245679999988774
No 19
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.88 E-value=7.7e-09 Score=103.19 Aligned_cols=98 Identities=24% Similarity=0.441 Sum_probs=78.4
Q ss_pred cccccCceEEeCCC-CCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHH
Q 000884 77 VLSEFDITIMDYPR-QYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTL 155 (1237)
Q Consensus 77 ~~s~~~~~V~~yP~-~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al 155 (1237)
....+++-.+..|. ++.+.| +++.|..-++.|++....+ ..|.||||||+|| ++||++||||-.+.++.++ |.
T Consensus 70 ~wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLG--ktvYVHCKAGRtR-SaTvV~cYLmq~~~wtpe~-A~ 143 (183)
T KOG1719|consen 70 LWKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLG--KTVYVHCKAGRTR-SATVVACYLMQHKNWTPEA-AV 143 (183)
T ss_pred HHHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccC--CeEEEEecCCCcc-chhhhhhhhhhhcCCCHHH-HH
Confidence 44556665555555 446777 9999999999999999887 4899999999999 6999999999999887665 99
Q ss_pred HHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884 156 DMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR 188 (1237)
Q Consensus 156 ~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~ 188 (1237)
+++.+.+++-+ ..|+|++-|.-|.+
T Consensus 144 ~~vr~iRp~Vl--------L~~~Qw~~l~ef~~ 168 (183)
T KOG1719|consen 144 EHVRKIRPRVL--------LRPAQWDVLKEFYK 168 (183)
T ss_pred HHHHhcCccee--------ecHHHHHHHHHHHH
Confidence 99866554333 58999999885554
No 20
>PRK12361 hypothetical protein; Provisional
Probab=98.84 E-value=3.5e-08 Score=122.87 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=102.8
Q ss_pred CeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCC
Q 000884 15 GLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG 94 (1237)
Q Consensus 15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~ 94 (1237)
-...|+++|+.- ++++..= ..+|++ ++- =.|.|+++|.... .+.....+....++|..|+.
T Consensus 94 ~~~~I~~~l~lG--~~~~a~d------------~~~L~~-~gI--~~Vldlt~E~~~~--~~~~~~~~i~yl~iPi~D~~ 154 (547)
T PRK12361 94 AIQKIDENLYLG--CRLFPAD------------LEKLKS-NKI--TAILDVTAEFDGL--DWSLTEEDIDYLNIPILDHS 154 (547)
T ss_pred cceEEcCcEEEC--CCCCccc------------HHHHHH-cCC--CEEEEcccccccc--cccccccCceEEEeecCCCC
Confidence 568899999997 5665321 345553 332 2478998763210 00111234567788998987
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCC
Q 000884 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLN 174 (1237)
Q Consensus 95 ~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~ 174 (1237)
.| .++.+.+.++.|++.++++ .-|+|||++|.+| |+++++||||+.+...+.++|++++.++|+.- .
T Consensus 155 ~p--~~~~l~~a~~~i~~~~~~~--~~VlVHC~~G~sR-Sa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v--------~ 221 (547)
T PRK12361 155 VP--TLAQLNQAINWIHRQVRAN--KSVVVHCALGRGR-SVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTA--------R 221 (547)
T ss_pred CC--cHHHHHHHHHHHHHHHHCC--CeEEEECCCCCCc-HHHHHHHHHHHhccCCCHHHHHHHHHHHCCCC--------C
Confidence 76 7899999999999988765 4599999999999 59999999999987778889999985444321 2
Q ss_pred CCchHHHHHHHHHHh
Q 000884 175 PVPSQLRYLQYVSRR 189 (1237)
Q Consensus 175 ~~PSQ~RYv~Yf~~l 189 (1237)
..+.|+|+++.|.+.
T Consensus 222 ~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 222 LNKRQLRALEKMLEQ 236 (547)
T ss_pred CCHHHHHHHHHHHHc
Confidence 567999999987753
No 21
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.81 E-value=4.3e-08 Score=99.45 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884 16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95 (1237)
Q Consensus 16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~ 95 (1237)
++.|+++|++- ++|+..- ..+|.+. +- -.|.||+.+.+. .....-+..+.+||+.|...
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~~-gi--~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKKL-GI--THVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHHc-CC--CEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence 67899999886 5665432 3445433 22 469999988753 11234566788899888764
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhc
Q 000884 96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQA 162 (1237)
Q Consensus 96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~ 162 (1237)
+ .....+..+++.++..+..+ .-|+|||.+|.||+ |+|+++||++.+.+ +.++|++++.+.+
T Consensus 61 ~-~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~Rs-~~~~~~~l~~~~~~-~~~~a~~~vr~~r 122 (139)
T cd00127 61 Q-DISKYFDEAVDFIDDAREKG--GKVLVHCLAGVSRS-ATLVIAYLMKTLGL-SLREAYEFVKSRR 122 (139)
T ss_pred C-ChHHHHHHHHHHHHHHHhcC--CcEEEECCCCCchh-HHHHHHHHHHHcCC-CHHHHHHHHHHHC
Confidence 4 12345556666666655543 57999999999995 99999999998866 6677999985443
No 22
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.64 E-value=1.7e-07 Score=89.68 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHcCC-CcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Q 000884 88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQ-HNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQ 161 (1237)
Q Consensus 88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~-~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~ 161 (1237)
..|.|++.|. ..+.+++|++.+..|..... ++-|+|||.+|.||+ |+++++||++.+.. ....+++..+..+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00012 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 4677888773 33899999999999988643 578899999999996 99999999988753 3445566666433
Q ss_pred chhhhhccCCCCCCCchHHHHHHHH
Q 000884 162 APRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 162 ~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
++..+ ..+.|.+|++..
T Consensus 86 r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00012 86 RPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhC--------CcHHHHHHHHHH
Confidence 33222 566777776654
No 23
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.64 E-value=1.7e-07 Score=89.68 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHcCC-CcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Q 000884 88 YPRQYEGCPLLTMEVIHHFLRSTESWLSLGQ-HNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQ 161 (1237)
Q Consensus 88 yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~-~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~ 161 (1237)
..|.|++.|. ..+.+++|++.+..|..... ++-|+|||.+|.||+ |+++++||++.+.. ....+++..+..+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00404 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 4677888773 33899999999999988643 578899999999996 99999999988753 3445566666433
Q ss_pred chhhhhccCCCCCCCchHHHHHHHH
Q 000884 162 APRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 162 ~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
++..+ ..+.|.+|++..
T Consensus 86 r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00404 86 RPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhC--------CcHHHHHHHHHH
Confidence 33222 566777776654
No 24
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.40 E-value=7.4e-06 Score=80.16 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=98.6
Q ss_pred CCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCC
Q 000884 10 RKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYP 89 (1237)
Q Consensus 10 ~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP 89 (1237)
|-.+..++|=-=|-++.+ =|++.. ...+|+++ ++|+- -.|...|+-.|+.. .+.+-++.|.|++
T Consensus 6 rPAPveIsy~~MrFLITh--nPtnaT----ln~fieEL-----kKygv--ttvVRVCe~TYdt~---~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITH--NPTNAT----LNKFIEEL-----KKYGV--TTVVRVCEPTYDTT---PLEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEec--CCCchh----HHHHHHHH-----HhcCC--eEEEEecccccCCc---hhhhcCceEeecc
Confidence 455666777766766663 455432 23334443 23442 67889999988743 4667889999999
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhcc
Q 000884 90 RQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQL 169 (1237)
Q Consensus 90 ~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~g 169 (1237)
|+|...| +-+.+-....-+..-+.+.++-.|+|||-||-||. -+++|--|+-+|+ .-++|++|+..+++..+
T Consensus 70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra-pvlvalalie~gm--kyedave~ir~krrga~--- 141 (173)
T KOG2836|consen 70 FDDGAPP--PNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA-PVLVALALIEAGM--KYEDAVEMIRQKRRGAI--- 141 (173)
T ss_pred cccCCCC--chHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc-hHHHHHHHHHccc--cHHHHHHHHHHHhhccc---
Confidence 9997766 33333333333333345689999999999999996 8888888887774 24779999854444222
Q ss_pred CCCCCCCchHHHHHHHHH
Q 000884 170 LSPLNPVPSQLRYLQYVS 187 (1237)
Q Consensus 170 v~~l~~~PSQ~RYv~Yf~ 187 (1237)
.--|+.||.-|.
T Consensus 142 ------n~kql~~lekyr 153 (173)
T KOG2836|consen 142 ------NSKQLLYLEKYR 153 (173)
T ss_pred ------cHHHHHHHHHhC
Confidence 446888887554
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=6.1e-05 Score=87.90 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 000884 135 AFMLAALLI 143 (1237)
Q Consensus 135 g~~ia~yL~ 143 (1237)
-.++.+.||
T Consensus 13 ~~n~~S~lL 21 (569)
T KOG3671|consen 13 PPNVPSTLL 21 (569)
T ss_pred CCCCccccc
Confidence 344444444
No 26
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.09 E-value=1.1e-05 Score=89.30 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=67.4
Q ss_pred EEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc----CCCCHHHHHHHHH
Q 000884 85 IMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK----QYSGEYKTLDMIY 159 (1237)
Q Consensus 85 V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~~~~~~al~~~~ 159 (1237)
+.+| .|.|++.|. ..+.++.|++.++.+...+..+-++|||.+|.||+ |++++++++... ..-+..+++..+.
T Consensus 132 ~~~~~~W~d~~~p~-~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRs-g~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 132 HFQYTGWPDHGVPE-SPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRT-GTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEeECCCCCCCccC-ChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCcc-chHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4444 377888873 44788999999998876455678999999999996 999999987665 2445666777774
Q ss_pred HhchhhhhccCCCCCCCchHHHHHHHH
Q 000884 160 RQAPRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
.+++ + .+ ..+.|.+|++..
T Consensus 210 ~~R~-~---~v----~~~~Qy~f~~~~ 228 (231)
T cd00047 210 SQRP-G---MV----QTEEQYIFLYRA 228 (231)
T ss_pred hccc-c---cc----CCHHHHHHHHHH
Confidence 4433 1 12 678999998864
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.02 E-value=1.5e-05 Score=94.85 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=63.7
Q ss_pred ceEEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcC-------CCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHH
Q 000884 83 ITIMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLG-------QHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKT 154 (1237)
Q Consensus 83 ~~V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-------~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~a 154 (1237)
.++++| -|.|||.|. .-+.|..|.+.++.|-..+ .+...||||.||-||| |++|||+++......+.+++
T Consensus 423 V~QFHyTnWPDHGVPp-ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRT-GTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 423 IPVLHVKNWPDHQPLP-STDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEEEEeCCCCCCCCCC-ChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchH-HHHHHHHHHhccccCCHHHH
Confidence 345565 678999873 3466888888888773222 1123589999999997 99999999876556677777
Q ss_pred HHHHHHhchhhhhccCCCCCCCchHHHHHHHHH
Q 000884 155 LDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVS 187 (1237)
Q Consensus 155 l~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~ 187 (1237)
+..++.+|...+ | ...-|.-.+.-..
T Consensus 501 V~dlR~qRng~M---V----Qt~eQy~~l~~~~ 526 (535)
T PRK15375 501 RADFRNSRNNRM---L----EDASQFVQLKAMQ 526 (535)
T ss_pred HHHHHhcCCccc---c----ccHHHHHHHHHHH
Confidence 777744433212 2 4666655554433
No 28
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=97.82 E-value=5.4e-05 Score=85.44 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=63.6
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc----CCCCHHHHHHHHHHhchh
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK----QYSGEYKTLDMIYRQAPR 164 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~~~~~~al~~~~~~~~~ 164 (1237)
.|.|++.| ...+.+++|++.++.+... ..+-++|||.+|.||+ |+++|+++++.. ..-...+++..+.++|+.
T Consensus 165 ~W~d~~~P-~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRs-g~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 165 NWPDHGVP-ESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRT-GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCcc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 56788887 3557889999999998664 2567999999999996 999999887653 234456677776444432
Q ss_pred hhhccCCCCCCCchHHHHHHH
Q 000884 165 ELLQLLSPLNPVPSQLRYLQY 185 (1237)
Q Consensus 165 ~~~~gv~~l~~~PSQ~RYv~Y 185 (1237)
.+ ..+-|.+|++.
T Consensus 242 ----~v----~~~~Qy~f~~~ 254 (258)
T smart00194 242 ----MV----QTEEQYIFLYR 254 (258)
T ss_pred ----cc----CCHHHHHHHHH
Confidence 22 68889888874
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.74 E-value=6.4e-05 Score=79.00 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCC--cccHHHHHHHHHHHHHHHHcCCCcEEE
Q 000884 46 GIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP--LLTMEVIHHFLRSTESWLSLGQHNVLM 123 (1237)
Q Consensus 46 ~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P--~p~l~~l~~~~~~~~~wL~~d~~NVvv 123 (1237)
.-..||++.+=. -|.||+.+.+..+...-+.+.+.+..+++......+ ...-+.+.++++.| |+ ..+.=|+
T Consensus 23 ~n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i---ld-~~n~PvL 95 (164)
T PF03162_consen 23 ANFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII---LD-PRNYPVL 95 (164)
T ss_dssp HHHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH---H--GGG-SEE
T ss_pred hhHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH---hC-CCCCCEE
Confidence 346788886544 488999986543433334567888888876544331 12345555555443 22 3456799
Q ss_pred EEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHHHH
Q 000884 124 MHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYVSR 188 (1237)
Q Consensus 124 vHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~~ 188 (1237)
|||+.|+.|| |+||+||=.+.+ |+ ...+++-|.+++..+ ..-.-.+||..|..
T Consensus 96 iHC~~G~~rT-G~vvg~lRk~Q~-W~-~~~i~~Ey~~f~~~~---------~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 96 IHCNHGKDRT-GLVVGCLRKLQG-WS-LSSIFDEYRRFAGPK---------IRYLDEQFIELFDV 148 (164)
T ss_dssp EE-SSSSSHH-HHHHHHHHHHTT-B--HHHHHHHHHHHHGGG-----------HHHHHHHHT---
T ss_pred EEeCCCCcch-hhHHHHHHHHcC-CC-HHHHHHHHHHhcCCC---------CcHHHHHHHHhcCc
Confidence 9999999997 999999965443 44 334777764444321 23455678887774
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.56 E-value=0.00012 Score=80.57 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=67.7
Q ss_pred eEEeC-CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCC----CCHHHHHHHH
Q 000884 84 TIMDY-PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQY----SGEYKTLDMI 158 (1237)
Q Consensus 84 ~V~~y-P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~----~~~~~al~~~ 158 (1237)
.+.+| .|.+++.| ...+.++.|++.+..|. .+.++-++|||.+|.||+ |+++++.++..... -+..+++..+
T Consensus 136 ~~~~~~~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRs-g~f~~~~~~~~~~~~~~~~~v~~~~~~l 212 (235)
T PF00102_consen 136 THFHYTNWPDDGVP-PSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRS-GTFCAIDILIEQLKKEGEVDVFEIVKKL 212 (235)
T ss_dssp EEEEEESSSSSSSG-SSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred cceeeeeccccccc-cccchhhhhhhhccccc-cCCccceEeecccccccc-cccccchhhccccccccchhhHHHHHHH
Confidence 34444 67788876 46788999999999998 677899999999999996 99999998877643 3455566665
Q ss_pred HHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884 159 YRQAPRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 159 ~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
++++. + .+ ..+.|.+|++..
T Consensus 213 R~~R~-~---~i----~~~~qy~f~~~~ 232 (235)
T PF00102_consen 213 RQQRP-G---AI----QSPEQYRFCYMA 232 (235)
T ss_dssp HTTST-T---SS----SSHHHHHHHHHH
T ss_pred HhhCC-C---cc----CCHHHHHHHHHH
Confidence 33332 1 22 677888887764
No 31
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.00032 Score=88.69 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=57.5
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcC-CCCHHHHHHHHHHhchhhhh
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ-YSGEYKTLDMIYRQAPRELL 167 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~-~~~~~~al~~~~~~~~~~~~ 167 (1237)
-|.||||| -.....+.|+..|.+- ..+.+--|+|||.||.||| |++|++=++.+-. ..-.-+.++++...|-.+.
T Consensus 1035 aWPDHg~P-~D~~~FL~Fleevrsv-R~~t~pPilvHCSAGiGRT-GVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~- 1110 (1144)
T KOG0792|consen 1035 AWPDHGVP-DDPNDFLDFLEEVRSV-RRGTNPPILVHCSAGIGRT-GVLILMETALCLLEHNEPVDILDIVRTMRDQRA- 1110 (1144)
T ss_pred ccccCCCC-CChHHHHHHHHHHHHH-hccCCCCeEEEccCCCCcc-eehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Confidence 56799999 3567777888777663 3343448999999999997 9999886554443 3333345665521111111
Q ss_pred ccCCCCCCCchHHHHHHH
Q 000884 168 QLLSPLNPVPSQLRYLQY 185 (1237)
Q Consensus 168 ~gv~~l~~~PSQ~RYv~Y 185 (1237)
.++.+++|-+||+-
T Consensus 1111 ----~mVQT~~QYkFVye 1124 (1144)
T KOG0792|consen 1111 ----MMVQTLSQYKFVYE 1124 (1144)
T ss_pred ----hhccchHHhhHHHH
Confidence 12268899999874
No 32
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.16 E-value=0.0038 Score=76.89 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=84.7
Q ss_pred ccChhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCC
Q 000884 1006 KLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRS---SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTA 1082 (1237)
Q Consensus 1006 ~L~~~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~---~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~ 1082 (1237)
.|...++.++.+..|....-|..++.|+..-.+.+.+.+. .+..+.-+...+++ +|.. +..+++-|-+-
T Consensus 562 ~lr~VleiILA~gNymns~kRg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i~e--klp~----l~~F~~el~~~-- 633 (830)
T KOG1923|consen 562 KLRPVLEIILAFGNYMNSSKRGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTIAE--KLPA----LQLFFSELDFV-- 633 (830)
T ss_pred HHHHHHHHHHHhhccCCCcccccccceeccccHHHhhccCCccceeeeehhhHHHHH--hhHH----HHhhHHHhhcc--
Confidence 4666777777888888888888888888776666655543 22233333333322 2221 12222222221
Q ss_pred ccccccccchhhhhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000884 1083 RGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1083 rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
.-|....|++. +.|+|.-+.+++|..- .... ++.+ .-|..+.+..+--++.|.++++.+...++.+...
T Consensus 634 -eKa~av~lesV--~~Dv~eL~~g~~l~~k---E~e~---~~~~--~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y 702 (830)
T KOG1923|consen 634 -EKATAVQLESV--LADVKELNAGMTLAEK---ETER---EGLD--VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEY 702 (830)
T ss_pred -chhhhhhhhcc--chhHHHHHhHHHHHHH---HHhh---hccc--hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHh
Confidence 12334445543 3455555555444322 1111 1111 1123333444556778888888888888888888
Q ss_pred hhcccCCCccchhHHHHHHHHHHHH
Q 000884 1163 LSMSENDGAISENFSKILREFLRFA 1187 (1237)
Q Consensus 1163 l~~s~~d~~~~d~F~~~l~~Fl~~a 1187 (1237)
+..+...-+. ..|...+..|+...
T Consensus 703 ~Gespk~tpp-t~ff~~f~~F~~~~ 726 (830)
T KOG1923|consen 703 FGESPKTTPP-TVFFQLFVRFVRAY 726 (830)
T ss_pred hCCCCCCCCC-CccHHHHHHHHHHH
Confidence 8765432221 24555555565543
No 33
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.12 E-value=0.001 Score=77.78 Aligned_cols=142 Identities=13% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEE---EEcCCCc-chhhhhccccccCceEEeCC
Q 000884 14 DGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLV---FNFREEE-TKSLMANVLSEFDITIMDYP 89 (1237)
Q Consensus 14 lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V---~Nl~~~~-~~s~~~~~~s~~~~~V~~yP 89 (1237)
+|.-.|-.++.-- ..|..... ...+|-.-.++..+|.++ +|+| ..|..-. |+ ....+.+.+..-..--
T Consensus 22 ~~~rfi~~K~pL~-~~~~~k~~-~~~~~f~~~dl~~~l~~~----~~~vgl~iDltnt~ryy--~~~~~~~~g~~Y~K~~ 93 (393)
T KOG2386|consen 22 DDTRFIPFKTPLN-SSYSTKTF-PGSQRFQPKDLFELLKEH----NYKVGLKIDLTNTLRYY--DKPELEERGVKYLKRN 93 (393)
T ss_pred ccceEEEEecccC-CCCCcCCC-CCccccCHHHHHHHHHhc----CceEEEEEeccceeeee--ccccccccceeEEEec
Confidence 3444444444322 26776666 455588889999998876 3444 3443222 22 0111111111111112
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHH--cCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHhchhhh
Q 000884 90 RQYEGCPLLTMEVIHHFLRSTESWLS--LGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQAPREL 166 (1237)
Q Consensus 90 ~~d~~~P~p~l~~l~~~~~~~~~wL~--~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~~~~~~ 166 (1237)
+..|+. .|..+.+..|.+.++.+.. .++..+|.|||-.|+-|| |+|||+||+-.+.+ +..+|+.+|...++.++
T Consensus 94 c~g~~~-vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrt-gyLI~~yL~~~~~~-s~~~aik~f~~~r~~gi 169 (393)
T KOG2386|consen 94 CPGRGV-VPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRT-GYLICAYLADVGGY-SSSEAIKRFADARPPGI 169 (393)
T ss_pred cCCccc-CCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCccccc-ceeeeeeeeeccCc-cHHHHHHHHHHhCCCcc
Confidence 233442 2388999999999999999 789999999999999997 99999999999985 45559999966555444
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=96.94 E-value=0.0035 Score=72.85 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=55.7
Q ss_pred EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHcCC---------CcEEEEEeccCCccchhHHHHHHHHHHcC----C
Q 000884 85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSLGQ---------HNVLMMHCERGGWPVLAFMLAALLIYRKQ----Y 148 (1237)
Q Consensus 85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~---------~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~----~ 148 (1237)
|.+| -|.||+.|. ....++.|++.+..|-..-. ..=+||||.+|-||| |+.||.-++.... .
T Consensus 184 V~h~~y~~Wpd~~~P~-~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRt-Gtfcaidi~i~~l~~~~~ 261 (312)
T PHA02747 184 ISHFQCSEWFEDETPS-DHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKT-GIFCAVDICLNQLVKRKA 261 (312)
T ss_pred EEEEEECCCCCCCCCC-ChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcch-hHHHHHHHHHHHHHhcCC
Confidence 5554 778888873 45566778777766643211 135999999999997 9988876554332 2
Q ss_pred CCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHH
Q 000884 149 SGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYL 183 (1237)
Q Consensus 149 ~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv 183 (1237)
-...+++..++++|+ . .| ...-|-.|+
T Consensus 262 v~v~~~V~~lR~qR~-~---~V----qt~~QY~F~ 288 (312)
T PHA02747 262 ICLAKTAEKIREQRH-A---GI----MNFDDYLFI 288 (312)
T ss_pred CCHHHHHHHHHhccc-c---cc----CCHHHHHHH
Confidence 223345555433332 1 12 577888888
No 35
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=96.90 E-value=0.00096 Score=69.15 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=37.4
Q ss_pred cccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHH
Q 000884 79 SEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLI 143 (1237)
Q Consensus 79 s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~ 143 (1237)
..++....+.|..||.+| .-+.+-.|+..+.++ ..+-.+++||++|+|||+-+|+.+.|+
T Consensus 89 ~~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346777888899999998 445555555555444 346889999999999996666655554
No 36
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.89 E-value=0.00071 Score=78.21 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=70.9
Q ss_pred hCCCCcEEEEEcCCCcc-hhhhhccccccCc----------eEEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHc-CC
Q 000884 54 HSPDSQFLVFNFREEET-KSLMANVLSEFDI----------TIMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSL-GQ 118 (1237)
Q Consensus 54 ~h~~~~y~V~Nl~~~~~-~s~~~~~~s~~~~----------~V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~-d~ 118 (1237)
.|+. +.|-|..++.. ++ .+.+|.. .|.+| -|.|||+|.-| .-+++|+.+++.--.. -.
T Consensus 378 ~~G~--~~v~~v~E~~t~dY----~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dP-g~vLnFLe~V~~rq~~l~~ 450 (600)
T KOG0790|consen 378 EYGV--MRVRNVKESDTHDY----TLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDP-GGVLNFLEEVNHRQESLMD 450 (600)
T ss_pred hcCc--eEEEeccccccccc----eehheeeccccCCcchhhhhhhheeecccCCCcCCc-cHHHHHHHHhhhhhccccc
Confidence 4553 89999888652 11 1222211 13332 56799999543 6678899888543111 01
Q ss_pred CcEEEEEeccCCccchhHHHHHHHHHHc----CC---CCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884 119 HNVLMMHCERGGWPVLAFMLAALLIYRK----QY---SGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 119 ~NVvvvHCk~Gkgrt~g~~ia~yL~y~~----~~---~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
---|||||.||-||| |++|-.=+|.-. .. -...+++.|+..++ |+++.+--|-|||+|-
T Consensus 451 AgpIvVHCSAGIGrT-GTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqR--------SGmVQTEaQYkFiY~A 516 (600)
T KOG0790|consen 451 AGPIVVHCSAGIGRT-GTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQR--------SGMVQTEAQYKFIYVA 516 (600)
T ss_pred cCcEEEEccCCcCCc-ceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHh--------cchhhhHHhHHHHHHH
Confidence 127899999999998 876654433221 12 23567888884443 3444677899999863
No 37
>PLN02727 NAD kinase
Probab=96.87 E-value=0.0018 Score=82.14 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=68.1
Q ss_pred hhhh---cCHHHHHHHHhhhCCCCcEEEEEcCCCcchh-----hhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHH
Q 000884 38 EDYK---KYIGGIIGQLREHSPDSQFLVFNFREEETKS-----LMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRS 109 (1237)
Q Consensus 38 ~~YR---n~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s-----~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~ 109 (1237)
..|| -.-+++.. |.++ + - =-|.||+++.-.. .+.......+.+.+++|..+.+.| +.+.|..|.+.
T Consensus 262 ~~~rsgQpspe~la~-LA~~-G-f-KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~ 335 (986)
T PLN02727 262 AFWRGGQVTEEGLKW-LLEK-G-F-KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASL 335 (986)
T ss_pred eEEEeCCCCHHHHHH-HHHC-C-C-eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHH
Confidence 3466 23344544 4433 2 1 4599998765311 122233447889999998776666 78998888887
Q ss_pred HHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCC
Q 000884 110 TESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQY 148 (1237)
Q Consensus 110 ~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~ 148 (1237)
+++ .-..=|+|||+.|.+|+ |+|+||||.|.-..
T Consensus 336 l~~----slpkPVLvHCKSGarRA-GamvA~yl~~~~~~ 369 (986)
T PLN02727 336 VSD----SSKKPIYLHSKEGVWRT-SAMVSRWKQYMTRS 369 (986)
T ss_pred HHh----hcCCCEEEECCCCCchH-HHHHHHHHHHHccc
Confidence 644 23467999999999997 99999999987543
No 38
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=96.83 E-value=0.0027 Score=73.60 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=55.3
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcC----------CCcEEEEEeccCCccchhHHHHHHHHHHcCC----CCHHHH
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG----------QHNVLMMHCERGGWPVLAFMLAALLIYRKQY----SGEYKT 154 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d----------~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~----~~~~~a 154 (1237)
-|.|||.| ..-..+++|++.+..|-... ...=+||||.+|-||| |+.||...+....- -...++
T Consensus 190 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-GtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 190 DWPHGGLP-RDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRA-GAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchh-HHHHHHHHHHHHHHhcCCCCHHHH
Confidence 67899987 35577888888887764221 1246999999999997 99888776654321 122234
Q ss_pred HHHHHHhchhhhhccCCCCCCCchHHHHHHH
Q 000884 155 LDMIYRQAPRELLQLLSPLNPVPSQLRYLQY 185 (1237)
Q Consensus 155 l~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Y 185 (1237)
+..++++|+ +. | .+.-|-.|++.
T Consensus 268 V~~lR~qR~-~~---V----qt~~QY~F~y~ 290 (303)
T PHA02742 268 VRDLRKQRH-NC---L----SLPQQYIFCYF 290 (303)
T ss_pred HHHHHhhcc-cc---c----CCHHHHHHHHH
Confidence 444433332 21 2 56778777664
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.0042 Score=71.26 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=66.1
Q ss_pred cCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHH-HHHHcCCCCHHHHHHHHH
Q 000884 81 FDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAAL-LIYRKQYSGEYKTLDMIY 159 (1237)
Q Consensus 81 ~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~y-L~y~~~~~~~~~al~~~~ 159 (1237)
+-..+..+-|.|||.| -+.+.|..|.+....|+..+ .-..+|||.||-||| ||.||-- |++.-......+-...+.
T Consensus 251 ~ir~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRT-GTFiald~LLqq~~~~~~vdi~~iv~ 327 (374)
T KOG0791|consen 251 KIRHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRT-GTFIALDRLLQQIDSEETVDIFGVVL 327 (374)
T ss_pred eeEEEEEeeccccCCC-CCchhHHHHHHHHHhhcccC-CCceeEEeecccccc-cchHhHHHHHHHhcccccccHHHHHH
Confidence 3334555688999998 56789999999999999987 678999999999997 9888876 454443443333444443
Q ss_pred HhchhhhhccCCCCCCCchHHHHHHHHH
Q 000884 160 RQAPRELLQLLSPLNPVPSQLRYLQYVS 187 (1237)
Q Consensus 160 ~~~~~~~~~gv~~l~~~PSQ~RYv~Yf~ 187 (1237)
..+..+ .+.| .+=-|.-||++--
T Consensus 328 ~lR~~R-~~mV----qte~Qyvfl~~c~ 350 (374)
T KOG0791|consen 328 ELRSAR-MLMV----QTEDQYVFLHQCV 350 (374)
T ss_pred Hhhhcc-cccc----chHHHHHHHHHHH
Confidence 322222 1222 4445555665543
No 40
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=96.61 E-value=0.0068 Score=70.86 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=54.7
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHc-------CC--CcEEEEEeccCCccchhHHHHHHHHHHcC----CCCHHHHH
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSL-------GQ--HNVLMMHCERGGWPVLAFMLAALLIYRKQ----YSGEYKTL 155 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~-------d~--~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~----~~~~~~al 155 (1237)
-|.|||.| .....++.|++.+..|-.. ++ ..-+||||.+|.||| |+.||.-.+.... .-...+++
T Consensus 209 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-Gtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 209 DWPDNGIP-TGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRA-GTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcc-hhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 67888987 3466788888888877431 11 247999999999997 9988765543321 12233344
Q ss_pred HHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884 156 DMIYRQAPRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 156 ~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
..++++|. . .| ...-|-.|++-.
T Consensus 287 ~~lR~qR~-~---~V----qt~~QY~F~y~~ 309 (323)
T PHA02746 287 LKIRKQRH-S---SV----FLPEQYAFCYKA 309 (323)
T ss_pred HHHHhccc-c---cC----CCHHHHHHHHHH
Confidence 44433222 1 12 577888777643
No 41
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.57 E-value=0.0041 Score=71.77 Aligned_cols=91 Identities=10% Similarity=0.119 Sum_probs=55.2
Q ss_pred EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHH-------cCCCcEEEEEeccCCccchhHHHHHHHHHHcC-CCC---
Q 000884 85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLS-------LGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ-YSG--- 150 (1237)
Q Consensus 85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~-------~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~-~~~--- 150 (1237)
|.+| -|.|||.|. .-..++.|++.+.++.. .+...=+||||.+|-||| |+.||.-.+.... ..+
T Consensus 178 V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRT-GtFcaiDi~l~~~~~~~~vd 255 (298)
T PHA02740 178 ISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSS-AVFCVFDICATEFDKTGMLS 255 (298)
T ss_pred EEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchh-HHHHHHHHHHHHHHhcCccc
Confidence 5554 677899873 45667778777665431 222346899999999997 9988876554332 122
Q ss_pred HHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHH
Q 000884 151 EYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQY 185 (1237)
Q Consensus 151 ~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Y 185 (1237)
..+++..++++|. . .| ..+.|-.|++.
T Consensus 256 i~~~V~~lR~qR~-~---~V----qt~~QY~F~y~ 282 (298)
T PHA02740 256 IANALKKVRQKKY-G---CM----NCLDDYVFCYH 282 (298)
T ss_pred HHHHHHHHHhhCc-c---cc----CCHHHHHHHHH
Confidence 2223333322222 1 12 67888888765
No 42
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.44 E-value=0.015 Score=59.36 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=67.4
Q ss_pred eeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhh------hhccccccCceEEeCC
Q 000884 16 LLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSL------MANVLSEFDITIMDYP 89 (1237)
Q Consensus 16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~------~~~~~s~~~~~V~~yP 89 (1237)
+.-|++++++. +=+++ +| ...|.+. +- -.|+||+...-... +.......+..+.++|
T Consensus 2 ~~~i~~~~~~s--~qlt~-----------~d-~~~L~~~-Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iP 64 (135)
T TIGR01244 2 IRKLTEHLYVS--PQLTK-----------AD-AAQAAQL-GF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQP 64 (135)
T ss_pred ceEcCCCeeEc--CCCCH-----------HH-HHHHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEee
Confidence 45677887776 22322 22 3445544 22 46999985321100 0001123577888888
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884 90 RQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI 158 (1237)
Q Consensus 90 ~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~ 158 (1237)
...... .-+.+..|.+.+++ ...-|++||+.|+ |+ |++.+-++.+.| -..+++++..
T Consensus 65 v~~~~~---~~~~v~~f~~~~~~-----~~~pvL~HC~sG~-Rt-~~l~al~~~~~g--~~~~~i~~~~ 121 (135)
T TIGR01244 65 VTAGDI---TPDDVETFRAAIGA-----AEGPVLAYCRSGT-RS-SLLWGFRQAAEG--VPVEEIVRRA 121 (135)
T ss_pred cCCCCC---CHHHHHHHHHHHHh-----CCCCEEEEcCCCh-HH-HHHHHHHHHHcC--CCHHHHHHHH
Confidence 765442 55677777766652 2356999999999 96 888777776655 3566677764
No 43
>PHA02738 hypothetical protein; Provisional
Probab=96.42 E-value=0.012 Score=68.87 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=56.4
Q ss_pred EEeC---CCCCCCCCcccHHHHHHHHHHHHHHHHc--------CC----CcEEEEEeccCCccchhHHHHHHHHHHcC--
Q 000884 85 IMDY---PRQYEGCPLLTMEVIHHFLRSTESWLSL--------GQ----HNVLMMHCERGGWPVLAFMLAALLIYRKQ-- 147 (1237)
Q Consensus 85 V~~y---P~~d~~~P~p~l~~l~~~~~~~~~wL~~--------d~----~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~-- 147 (1237)
|.+| -|.|++.|. .-..+++|++.+..+-.. +. ..-+||||.+|.||| |+.||.-.+....
T Consensus 179 V~h~~y~~Wpd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRt-GtFcaidi~i~~~~~ 256 (320)
T PHA02738 179 VTHFNFTAWPDHDVPK-NTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRT-PCYCVVDISISRFDA 256 (320)
T ss_pred EEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChh-hhhhHHHHHHHHHHh
Confidence 5553 678888873 446678888888765321 11 236999999999997 8887766554432
Q ss_pred --CCCHHHHHHHHHHhchhhhhccCCCCCCCchHHHHHHHH
Q 000884 148 --YSGEYKTLDMIYRQAPRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 148 --~~~~~~al~~~~~~~~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
.-...+++..++++|. . .| ..+.|-.|++..
T Consensus 257 ~~~vdv~~~V~~lR~qR~-~---~v----qt~~QY~F~y~~ 289 (320)
T PHA02738 257 CATVSIPSIVSSIRNQRY-Y---SL----FIPFQYFFCYRA 289 (320)
T ss_pred cCCcCHHHHHHHHHhhhh-h---cc----CCHHHHHHHHHH
Confidence 1122334444433332 1 22 678898887653
No 44
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.29 E-value=0.072 Score=61.31 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHh
Q 000884 118 QHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIYRQ 161 (1237)
Q Consensus 118 ~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~~~ 161 (1237)
.+-.|+|||.+|..| +++++.||||+...++-.+ |++++-.+
T Consensus 154 ~~~~vlVHC~~GvSR-Sat~viAYlM~~~~~~l~~-A~~~vk~~ 195 (285)
T KOG1716|consen 154 KGGKVLVHCQAGVSR-SATLVIAYLMKYEGLSLED-AYELVKSR 195 (285)
T ss_pred CCCeEEEEcCCccch-hHHHHHHHHHHHcCCCHHH-HHHHHHHh
Confidence 467899999999999 4999999999998776655 99988433
No 45
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=96.26 E-value=2.1 Score=56.77 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=43.1
Q ss_pred ccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAV 1201 (1237)
Q Consensus 1127 f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~ 1201 (1237)
|..-+.....-+..++..|..+.......+.++...+.....++.....|..++..|+.......+++....++.
T Consensus 719 f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~ 793 (833)
T KOG1922|consen 719 FSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKE 793 (833)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 434343333333445555666666666666666666654433333345677888888888877666655554433
No 46
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.98 E-value=0.0079 Score=63.27 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcC
Q 000884 109 STESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQ 147 (1237)
Q Consensus 109 ~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~ 147 (1237)
.+-.+|...+ +-+++||.+||-|| |+++|-+|...|.
T Consensus 115 ~~~~~l~~~~-~p~l~HC~aGKDRT-G~~~alll~~lGV 151 (164)
T PF13350_consen 115 KIFELLADAP-GPVLFHCTAGKDRT-GVVAALLLSLLGV 151 (164)
T ss_dssp HHHHHHH-TT---EEEE-SSSSSHH-HHHHHHHHHHTT-
T ss_pred HHHHHhccCC-CcEEEECCCCCccH-HHHHHHHHHHcCC
Confidence 3344455555 79999999999997 9988888776664
No 47
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.89 E-value=0.011 Score=65.12 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
-|.|-+.| ++..|+++.+ +..... ..+.++|||.||-||| ||.|+--.+.+-
T Consensus 192 nW~D~~~p--~i~sl~~~~~---sl~~sp~~t~piiVHCSAGvGRT-GTFIalD~ll~~ 244 (302)
T COG5599 192 NWVDFNVP--DIRSLTEVIH---SLNDSPVRTGPIIVHCSAGVGRT-GTFIALDILLRM 244 (302)
T ss_pred CccccCCc--CHHHHHHHHH---HhhcCcCCCCCEEEEeccCCCCc-ceeeeHHHHHhc
Confidence 34555555 5555555444 444332 5688999999999998 999988766543
No 48
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=95.42 E-value=0.12 Score=56.52 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCC----CCcccHHHHHHHHHHHHHHHHcCCCcEEE
Q 000884 48 IGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG----CPLLTMEVIHHFLRSTESWLSLGQHNVLM 123 (1237)
Q Consensus 48 ~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~----~P~p~l~~l~~~~~~~~~wL~~d~~NVvv 123 (1237)
..||++-|- +-|.-||.|.|-.....-+...++.+.++..+-.. -| .-.+..+.++.+-+.|-.-.+.=++
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P--~~~~~~~~i~~~l~~lld~~N~P~L 152 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP--FVNIPDHSIRKALKVLLDKRNYPIL 152 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC--CCCChHHHHHHHHHHHhcccCCceE
Confidence 678887664 45667887765322222234455566665443222 22 2333444444444444445677899
Q ss_pred EEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884 124 MHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI 158 (1237)
Q Consensus 124 vHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~ 158 (1237)
|||+.||.|| |++|+|+=...+++.+. .|+-|
T Consensus 153 ihc~rGkhRt-g~lVgclRklq~W~lss--il~Ey 184 (249)
T KOG1572|consen 153 IHCKRGKHRT-GCLVGCLRKLQNWSLSS--ILDEY 184 (249)
T ss_pred EecCCCCcch-hhhHHHHHHHhccchhH--HHHHH
Confidence 9999999997 99999997555544332 45544
No 49
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.40 E-value=0.035 Score=61.00 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=47.5
Q ss_pred EEeCCCCCCCCCcccHHHHHHHHHHHHHHHHc--CCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHHH
Q 000884 85 IMDYPRQYEGCPLLTMEVIHHFLRSTESWLSL--GQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMIY 159 (1237)
Q Consensus 85 V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~--d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~~ 159 (1237)
...||..||... .| -.|.-+..+|+.. .++--|+|||.||-.| +.|++.+|||..-.+ +-.+|++++.
T Consensus 220 YkqipisDh~Sq--nl---s~ffpEAIsfIdeArsk~cgvLVHClaGISR-SvTvtvaYLMqkl~l-slndAyd~Vk 289 (343)
T KOG1717|consen 220 YKQIPISDHASQ--NL---SQFFPEAISFIDEARSKNCGVLVHCLAGISR-SVTVTVAYLMQKLNL-SLNDAYDFVK 289 (343)
T ss_pred EEeeeccchhhh--hh---hhhhHHHHHHHHHhhccCCcEEEeeeccccc-hhHHHHHHHHHHhcc-chhhHHHHHH
Confidence 455788887654 33 3333344444443 4556799999999999 599999999976655 4556999984
No 50
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.95 E-value=0.047 Score=61.51 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCH
Q 000884 101 EVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGE 151 (1237)
Q Consensus 101 ~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~ 151 (1237)
+..++-+..+-.-+...++--|++||++||-|| |+++|||+...+.....
T Consensus 118 ~~~~e~~~~~~~l~~~~e~~PvL~HC~~GkdRT-Gl~~al~r~~~~~~~~~ 167 (249)
T COG2365 118 EDAAERLVELLQLLADAENGPVLIHCTAGKDRT-GLVAALYRKLVGGSDET 167 (249)
T ss_pred hhhHHHHHHHHHHHhhcccCCEEEecCCCCcch-HHHHHHHHHHhCCchhH
Confidence 334444444444444444578999999999998 99999999999876554
No 51
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=94.57 E-value=0.12 Score=63.15 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=69.9
Q ss_pred ccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAIS---ENFSKILREFLRFAEAEVRTLASLYSAVGR 1203 (1237)
Q Consensus 1127 f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~---d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~ 1203 (1237)
|..-+..+..++..+++.|...+.++.+.++++...++....+.... ..|...+..|.+.+++.++.+++.-++...
T Consensus 311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~ 390 (432)
T smart00498 311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQ 390 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555788899999999999999999999999987665542222 245566777778888888888888888888
Q ss_pred HHHHHHHHcccCC
Q 000884 1204 NVDALILYFGEDP 1216 (1237)
Q Consensus 1204 ~~~~l~~yFGEdp 1216 (1237)
..+++.+||+.++
T Consensus 391 ~~~~~~~~~~~~~ 403 (432)
T smart00498 391 LVKETTEYEQSSS 403 (432)
T ss_pred HHHHHHhhhhhhh
Confidence 8899999998754
No 52
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.95 E-value=0.15 Score=61.47 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccCCccchhHHHHHHHHHHcCC-----CCHHHHHHHHHHhc
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERGGWPVLAFMLAALLIYRKQY-----SGEYKTLDMIYRQA 162 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~-----~~~~~al~~~~~~~ 162 (1237)
-|.||+.|. ....++.+++. .-+... ...=++|||.+|.||| |++++...+..... ....+.+..+..+|
T Consensus 271 ~WPd~~~p~-~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRt-gt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR 346 (415)
T KOG0789|consen 271 NWPDHGAPD-SVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRA-GTLVLIEHALIELQGPEGEPPIDEILREIRYQR 346 (415)
T ss_pred CCccccCCc-chHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCcc-chHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence 456677762 23444444443 223333 3457899999999997 99887664444432 22333444332222
Q ss_pred hhhhhccCCCCCCCchHHHHHHHH
Q 000884 163 PRELLQLLSPLNPVPSQLRYLQYV 186 (1237)
Q Consensus 163 ~~~~~~gv~~l~~~PSQ~RYv~Yf 186 (1237)
.. .+ .+.-|-.|++..
T Consensus 347 ~~----~v----qt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 347 PG----AV----QSPLQYLFIYAA 362 (415)
T ss_pred hh----cc----cchhHHHHHHHH
Confidence 11 12 677787777643
No 53
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=93.89 E-value=1.4 Score=51.61 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=3.7
Q ss_pred CccccCCC
Q 000884 351 CFEEKGGL 358 (1237)
Q Consensus 351 ~~~~~~~~ 358 (1237)
.+|.|++|
T Consensus 141 RDdgk~gL 148 (518)
T KOG1830|consen 141 RDDGKDGL 148 (518)
T ss_pred ccCCcccc
Confidence 44444444
No 54
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.77 E-value=0.6 Score=48.59 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=69.0
Q ss_pred hccCCCCCCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEE
Q 000884 7 LFFRKPPDGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIM 86 (1237)
Q Consensus 7 ~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~ 86 (1237)
++....=-+|+.||+-+|.-. |--| +.+.|-++++- =+|.|-+-|.-+.. .=+.+-+
T Consensus 8 ~~~~~~~~~~SqIt~sLfl~~-GvaA--------------~~k~~l~~~~I--t~IiNat~E~pn~~------l~~~qy~ 64 (198)
T KOG1718|consen 8 LEVQPSIGGMSQITPSLFLSN-GVAA--------------NDKLLLKKRKI--TCIINATTEVPNTS------LPDIQYM 64 (198)
T ss_pred cccCCCccchhhcCcceeEec-cccc--------------cCHHHHHhcCc--eEEEEcccCCCCcc------CCCceeE
Confidence 333344457889998887642 2221 23344456664 68999988864311 1122344
Q ss_pred eCCCCCCCCCcccHHHHHHHHH-HHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884 87 DYPRQYEGCPLLTMEVIHHFLR-STESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYKTLDMI 158 (1237)
Q Consensus 87 ~yP~~d~~~P~p~l~~l~~~~~-~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~al~~~ 158 (1237)
..|..|+-.- .|..-++... .|++- ..+ +--.+|||-||-.| +|.++-+|||... +-+-.||..++
T Consensus 65 kv~~~D~p~~--~l~~hfD~vAD~I~~v-~~~-gG~TLvHC~AGVSR-SAsLClAYLmK~~-~msLreAy~~v 131 (198)
T KOG1718|consen 65 KVPLEDTPQA--RLYDHFDPVADKIHSV-IMR-GGKTLVHCVAGVSR-SASLCLAYLMKYH-CMSLREAYHWV 131 (198)
T ss_pred EEEcccCCcc--hhhhhhhHHHHHHHHH-Hhc-CCcEEEEEccccch-hHHHHHHHHHHHc-cchHHHHHHHH
Confidence 4455554221 2222222121 12222 222 34578999999999 6999999998655 45566788876
No 55
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.69 E-value=0.27 Score=50.43 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHcC-CCcEEEEEeccC--Cccc-hhHHHHHHHHHHcCCCCHHHHHHHH
Q 000884 91 QYEGCPLLTMEVIHHFLRSTESWLSLG-QHNVLMMHCERG--GWPV-LAFMLAALLIYRKQYSGEYKTLDMI 158 (1237)
Q Consensus 91 ~d~~~P~p~l~~l~~~~~~~~~wL~~d-~~NVvvvHCk~G--kgrt-~g~~ia~yL~y~~~~~~~~~al~~~ 158 (1237)
.|.|+ +.|.+|++||..+++-|+.. ..+-.+|||-.. +-|+ .+++||||++....++ +++|+..+
T Consensus 39 ~DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~s-pe~A~~~l 107 (141)
T PF14671_consen 39 ADFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMS-PEEAYKPL 107 (141)
T ss_dssp S--------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHH
T ss_pred CcCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 45565 49999999999999999972 234556666543 3344 6999999998777664 55588877
No 56
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=87.56 E-value=0.93 Score=59.26 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc-CCCCH
Q 000884 98 LTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK-QYSGE 151 (1237)
Q Consensus 98 p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~-~~~~~ 151 (1237)
..-..|..+......|=....+.=.+|||.+|.||+ |+.||+-++... ...+.
T Consensus 997 ~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rs-g~f~ai~~l~e~~~~e~~ 1050 (1087)
T KOG4228|consen 997 QSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRT-GTFCAISILLERMRKEGV 1050 (1087)
T ss_pred CCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcce-eehHHHHHHHHHHhhcCc
Confidence 344566667777788888877888999999999997 888887766554 34443
No 57
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=87.51 E-value=1.1 Score=44.09 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=48.3
Q ss_pred CeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCc--c----hhhhhccccccCceEEeC
Q 000884 15 GLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEE--T----KSLMANVLSEFDITIMDY 88 (1237)
Q Consensus 15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~--~----~s~~~~~~s~~~~~V~~y 88 (1237)
|+.-|++++.+. +-|+. +++. .|... +- =.|.|++... . ...+......++++..+.
T Consensus 1 di~~i~~~~~vs--~Q~~~-----------~d~~-~la~~-Gf--ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 1 DIRQISDDLSVS--GQPSP-----------EDLA-QLAAQ-GF--KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp --EEEETTEEEE--CS--H-----------HHHH-HHHHC-T----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CCEecCCCeEEC--CCCCH-----------HHHH-HHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 778899999887 44432 2222 33332 21 3488987331 1 112223455789999999
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccc
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPV 133 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt 133 (1237)
|....+ . +.+.+..|.+.+++ -++ =|++||+.|. |.
T Consensus 64 Pv~~~~-~--~~~~v~~f~~~l~~----~~~-Pvl~hC~sG~-Ra 99 (110)
T PF04273_consen 64 PVDGGA-I--TEEDVEAFADALES----LPK-PVLAHCRSGT-RA 99 (110)
T ss_dssp ---TTT-----HHHHHHHHHHHHT----TTT-SEEEE-SCSH-HH
T ss_pred ecCCCC-C--CHHHHHHHHHHHHh----CCC-CEEEECCCCh-hH
Confidence 987654 2 77888888877655 233 4889999887 74
No 58
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=87.25 E-value=0.64 Score=57.30 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHcCCCCHHH-----HHHHHHHhc
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRKQYSGEYK-----TLDMIYRQA 162 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~~~~~~~~-----al~~~~~~~ 162 (1237)
-|.++|.|. .-..|+.|-+.+.+-+. +.---|+|||-+|-||| ||.|..=|+..++..++.+ +|+++..++
T Consensus 899 SWp~egvPa-sarslLdFRRKVNK~YR-GRScpIiVH~sdGaGRT-G~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 899 SWPDEGVPA-SARSLLDFRRKVNKCYR-GRSCPIIVHCSDGAGRT-GTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred cccccCCcc-chHHHHHHHHHhhhhcc-CCCCceEEEccCCCCcc-ceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 677888884 66788999999887776 34677899999999997 9998888888887766653 677764444
No 59
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.03 E-value=33 Score=45.43 Aligned_cols=64 Identities=23% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC--CCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1145 LAEEMQALSKGLEKVVQELSMSEN--DGA--ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus 1145 L~~e~~~l~k~l~kl~~el~~s~~--d~~--~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
.++.++.|.+.++++.+.++.... ... .-+..+...++.+..|.++++.|+++-.+.++.-..|
T Consensus 1659 a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L 1726 (1758)
T KOG0994|consen 1659 AEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQAL 1726 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344455566666665555443211 110 1234555566667777777777766654444444444
No 60
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=86.76 E-value=21 Score=39.59 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
..+..=+..++..+..++..|..+.+..+.=+..|-.+ ...+|-..|..|++
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~----k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE----KVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44556666777777777777777777765555555543 34566666666655
No 61
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.99 E-value=14 Score=40.50 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=29.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccc
Q 000884 1010 CEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQ 1079 (1237)
Q Consensus 1010 ~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~ 1079 (1237)
+|-++..++-+|- ..|...++|+..+...+.-.-...-.+.-+|--+.--..++++....=..|+..|.
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~ 79 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP 79 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 4555555555554 44555555555444333222111122222233333333444444443334555443
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.28 E-value=6.6 Score=51.33 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcccccccCC
Q 000884 1062 KLRRIMQTILSLGNALNQGTA 1082 (1237)
Q Consensus 1062 ~L~~lL~~IL~lGN~LN~gt~ 1082 (1237)
..+.+-.+|..|+|||+..++
T Consensus 1469 s~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 345555688899999998764
No 63
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.67 E-value=11 Score=42.95 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=47.5
Q ss_pred ccccchhhhhhhhhccc--------CCccchhHHHHHHHhhc--CcccccccccccChHHHhhhhHHHHHHHHHHHHHHH
Q 000884 1087 IGFRLDSLLKLTDTRAR--------NNKMTLMHYLCKVLADK--LPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGL 1156 (1237)
Q Consensus 1087 ~GFkL~sL~KL~dtKs~--------d~k~tLLhylv~~l~~~--~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l 1156 (1237)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+.+..+ .-..+.-.-|+..++.+-+..++.+.++++++++.+
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l 185 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQL 185 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565554567776652 45677888887665332 122334455777778777777777777777777766
Q ss_pred HHHHHH
Q 000884 1157 EKVVQE 1162 (1237)
Q Consensus 1157 ~kl~~e 1162 (1237)
..+..+
T Consensus 186 ~~l~~d 191 (267)
T PF10234_consen 186 NNLASD 191 (267)
T ss_pred HHHHHH
Confidence 666544
No 64
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=82.59 E-value=21 Score=46.15 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHH
Q 000884 1184 LRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRS 1231 (1237)
Q Consensus 1184 l~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F 1231 (1237)
.+..+.+...|.+.|+.+++.++.|.+=+||| .+..||..+.+.
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied----RW~~vFr~l~~q 280 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKELIED----RWNIVFRNLGRQ 280 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH
Confidence 33344444556666777777777777777776 355555544443
No 65
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=80.03 E-value=4.2 Score=44.91 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000884 1041 SDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1041 ~dl~~~l~~v~~A~~el 1057 (1237)
.+++..++....+++.|
T Consensus 10 ~~le~~~d~~~~~~~~l 26 (215)
T cd07593 10 LELEKEIELRKEGMERL 26 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 66
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=78.58 E-value=1.9 Score=56.56 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHH
Q 000884 89 PRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLA 139 (1237)
Q Consensus 89 P~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia 139 (1237)
-|.|||.|. .-.-|+.|++-+..+-.- ..--+||||.||-||| |+.|+
T Consensus 702 ~Wpd~gvPe-~~t~lL~f~rrvk~~~p~-~aGPiVVHCSAGvGRT-G~fi~ 749 (1087)
T KOG4228|consen 702 AWPDHGVPE-TPTGLLKFRRRVKTFNPP-DAGPIVVHCSAGVGRT-GCFIV 749 (1087)
T ss_pred cCCCCCCcc-cchHHHHHHHHhccCCCc-CCCCEEEECCCCCCCc-ceEEE
Confidence 478999983 234567788877665411 1245899999999998 76443
No 67
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=76.41 E-value=9.9 Score=39.33 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=67.6
Q ss_pred CCeeeeeCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccc--cCceEEeCCCC
Q 000884 14 DGLLEISERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSE--FDITIMDYPRQ 91 (1237)
Q Consensus 14 lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~--~~~~V~~yP~~ 91 (1237)
.|--|.-.||+|. | ..+.....-+|+- .-||-=+.-+.|.-+......+ +...+-|.-+.
T Consensus 7 i~~~~f~t~Ivv~----P-------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~ 68 (172)
T COG5350 7 IDFDPFMTRIVVS----P-------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP 68 (172)
T ss_pred cccccceeeeEec----h-------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence 3455666677665 2 2345556667764 4666555544442222211111 11112222333
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccch-hHHHHHHHHHHcCCCCHHHHHHH
Q 000884 92 YEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVL-AFMLAALLIYRKQYSGEYKTLDM 157 (1237)
Q Consensus 92 d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~-g~~ia~yL~y~~~~~~~~~al~~ 157 (1237)
|.++=.+.-+.+..++..+++| +..--++|||-+|-+|.+ ..|++++-++.. .++.++.+.
T Consensus 69 ~~g~~ap~e~Hv~~i~DF~~~w---p~~apllIHC~aGISRStA~A~i~a~ala~~--~de~ela~~ 130 (172)
T COG5350 69 DDGWIAPGEAHVRAIIDFADEW---PRFAPLLIHCYAGISRSTAAALIAALALAPD--MDETELAER 130 (172)
T ss_pred CccccCCCHHHHHHHHHHHhcC---ccccceeeeeccccccchHHHHHHHHhhccc--cChHHHHHH
Confidence 4444344778888888888888 555678999999999974 455666666554 344444443
No 68
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=75.71 E-value=77 Score=35.01 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
..+..=+..++.++...+..|..+.+..++=+..|-.+ -..+|-..|..|++
T Consensus 146 ~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~----r~~dfk~~l~~~~e 197 (216)
T cd07627 146 NSLLSELEEAERRASELKKEFEEVSELIKSELERFERE----RVEDFRNSVEIYLE 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45566677778888888888888887776655666443 34455555555543
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.29 E-value=1.1e+02 Score=35.74 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 000884 1037 HTQVSDLRSSLNVVNSAAEQVRNSAKLRR 1065 (1237)
Q Consensus 1037 ~~~v~dl~~~l~~v~~A~~el~~S~~L~~ 1065 (1237)
.++...+...|......+.+|+..-.+|.
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777788877655555
No 70
>PRK10132 hypothetical protein; Provisional
Probab=72.49 E-value=22 Score=35.00 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp 1216 (1237)
+.+.|..|++.|...++.+-+....... ..-+..+.++...++.+...+...+.....+......+-.|-.|+|
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566777787777777776554332221 1236778889999999999988888877777888888999999986
No 71
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.61 E-value=1.5e+02 Score=33.70 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhcc
Q 000884 1063 LRRIMQTILSLGN 1075 (1237)
Q Consensus 1063 L~~lL~~IL~lGN 1075 (1237)
+..+++-+-.+|.
T Consensus 103 i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 103 IQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHhCc
Confidence 3444444444444
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.93 E-value=58 Score=41.37 Aligned_cols=28 Identities=7% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~ 1062 (1237)
+..+.+.+++..+..+..++++|.++..
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888876544
No 73
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=68.88 E-value=23 Score=39.52 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=5.9
Q ss_pred HHHhcccccccC
Q 000884 1070 ILSLGNALNQGT 1081 (1237)
Q Consensus 1070 IL~lGN~LN~gt 1081 (1237)
.+..|+-|..++
T Consensus 78 M~~~g~~lg~~S 89 (229)
T cd07594 78 MIEAGNDFGPGT 89 (229)
T ss_pred HHHHHhhCCCCC
Confidence 444555554444
No 74
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.77 E-value=54 Score=35.92 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccc
Q 000884 1033 KIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALN 1078 (1237)
Q Consensus 1033 k~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN 1078 (1237)
..++++.+.+|+..++.+.++|..+.+ ..+.+....-.+++-||
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~d--ag~~~~~a~~~F~~~l~ 47 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMID--AGKAFCQANKQFMNGIR 47 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999987 33343333334444333
No 75
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=68.26 E-value=2.3e+02 Score=38.35 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=5.2
Q ss_pred cCCCcEEEEEecc
Q 000884 116 LGQHNVLMMHCER 128 (1237)
Q Consensus 116 ~d~~NVvvvHCk~ 128 (1237)
.+.+++.-+-||.
T Consensus 606 e~g~l~~g~l~Kk 618 (1605)
T KOG0260|consen 606 EGGELLIGVLCKK 618 (1605)
T ss_pred eCCceEEEEeecc
Confidence 3333444444443
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.06 E-value=1e+02 Score=39.61 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=31.7
Q ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Q 000884 1018 MKVPRVESKLRVFSFKI-QFHTQVSDLRSSLNVVNSAAEQVRNSAKL 1063 (1237)
Q Consensus 1018 ~~vp~l~~RL~~l~fk~-~f~~~v~dl~~~l~~v~~A~~el~~S~~L 1063 (1237)
.+...++.+|..|.||+ ++..++.|++-.+.+...+++++.+...+
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~ 483 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQREL 483 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHH
Confidence 44456777788888866 45566788887777777777777665443
No 77
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=68.05 E-value=70 Score=28.71 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1142 LKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVD 1206 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~ 1206 (1237)
+.....+++...+.|+.....+..... |...+.|...+..|......-+..|.++.+.+.....
T Consensus 16 ~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~ 79 (86)
T PF06013_consen 16 LQAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQ 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554555555555544444 4457889988888888877766666666555554433
No 78
>PHA00728 hypothetical protein
Probab=67.58 E-value=17 Score=35.66 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
..+++|..+-.+|++.|.+++..+.
T Consensus 5 teveql~keneelkkkla~leal~n 29 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 3566777788888888888876664
No 79
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.27 E-value=75 Score=35.53 Aligned_cols=198 Identities=16% Similarity=0.264 Sum_probs=99.3
Q ss_pred hcCCCHHHHHHHhcccCCccccChhHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcH
Q 000884 986 KFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPR--VESKLRVFSFKIQFHTQVSD--LRSSLNVVNSAAEQVRNSA 1061 (1237)
Q Consensus 986 ~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~--l~~RL~~l~fk~~f~~~v~d--l~~~l~~v~~A~~el~~S~ 1061 (1237)
+.-||+||.+.+.. ..+.|.++|..+..+..+.+ .++|-.+ +..-+.++.+ +..-+-.|.+.|+....+.
T Consensus 24 naqpt~eerei~n~---~~evl~d~~~vl~d~~~y~~~~~~~r~~i---q~~~d~q~~ekaw~av~PlV~r~k~~ye~~~ 97 (321)
T KOG3951|consen 24 NAQPTDEEREIYNM---AEEVLQDADLVLADVSSYGNGCYAERNAI---QNPADEQLQEKAWGAVVPLVGRTKSYYEHVA 97 (321)
T ss_pred ccCCChHHHHHHHH---HHHHHHhhHHHHHHHHHHhcccHHHHHHh---hCCCcHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44577777665543 23456666666666655443 2222211 1111222211 2223334555566666677
Q ss_pred HHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhh
Q 000884 1062 KLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQ 1141 (1237)
Q Consensus 1062 ~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~ 1141 (1237)
++.+++..+|- -|+.| .+..-..|.. .+.+.++|-+++.|.-++..++ +-
T Consensus 98 ~lek~v~~llg---~L~~~---------pl~~~~~l~~--------------~QalaKQfAeil~F~LrFDelK----M~ 147 (321)
T KOG3951|consen 98 KIEKIVPIILG---SLSSG---------PLPLEEQLAN--------------KQALAKQFAEILHFTLRFDELK----MR 147 (321)
T ss_pred HHHHHHHHHHH---hhcCC---------CCCchHHHHH--------------HHHHHHHHHHHHHheehhhhhh----cc
Confidence 77777777664 13332 2221111110 1233444445556555444332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCH
Q 000884 1142 LKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPF 1221 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~ 1221 (1237)
-..|++|+.=.++-+.+.+-... .. ..+.......|+=|+.+|.-.++.|. +.+..|..|+ +..++
T Consensus 148 tpaIqNDfSYYRRt~sr~rv~~~--~~-~ev~~ELanrmslFyaeatPMLKtLs----------~at~kfvsen-k~lpI 213 (321)
T KOG3951|consen 148 TPAIQNDFSYYRRTLSRMRVYQD--PA-NEVNNELANRMSLFYAEATPMLKTLS----------NATTKFVSEN-KNLPI 213 (321)
T ss_pred ChhhccchHHHHHHHHHHHhccC--hh-hhccHHHHhHHHHHHhccCHHHHHHH----------HHHHHHHhcc-CCCCc
Confidence 23455666555555554432211 11 12345677889999999988766553 3445666665 34444
Q ss_pred H---HHHHHHHHHhh
Q 000884 1222 E---QAQIGVIRSAD 1233 (1237)
Q Consensus 1222 e---~~~s~l~~F~d 1233 (1237)
+ ++++|+..-|.
T Consensus 214 eNTTd~l~TmasVCr 228 (321)
T KOG3951|consen 214 ENTTDCLSTMASVCR 228 (321)
T ss_pred cchhHHHHHHHHHHH
Confidence 4 67777766554
No 80
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=66.84 E-value=47 Score=32.97 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=46.9
Q ss_pred EEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCc-----cccCCeEEEEE
Q 000884 207 VILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINC-----CIQGDVVLECI 281 (1237)
Q Consensus 207 I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~-----~v~GDV~i~~~ 281 (1237)
+.-++++..+..+.|.||++|+-+... ..++++..+. + -.|. +.+.|.+.. .-...+.|.|+
T Consensus 6 ~~A~~L~~~d~~g~~dpYv~v~l~~~~----~kT~v~~~t~----n-P~Wn----e~f~F~v~~~~~~~~~~~~l~~~v~ 72 (126)
T cd08682 6 LQARGLLCKGKSGTNDAYVIIQLGKEK----YSTSVKEKTT----S-PVWK----EECSFELPGLLSGNGNRATLQLTVM 72 (126)
T ss_pred EECcCCcCCCCCcCCCceEEEEECCee----eeeeeecCCC----C-CEeC----ceEEEEecCcccCCCcCCEEEEEEE
Confidence 334456666666789999999875421 1122222211 0 1221 224454432 23446788888
Q ss_pred ecCCcccccceEEEEEecccccc
Q 000884 282 SLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+.+. .++...|.++.|...=+.
T Consensus 73 d~~~-~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 73 HRNL-LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred Eccc-cCCCceeEEEEEEHHHhh
Confidence 8763 345678889888776554
No 81
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.81 E-value=70 Score=41.08 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHH-HHHHHHHHHh
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFE-QAQIGVIRSA 1232 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e-~~~s~l~~F~ 1232 (1237)
.+|.--+..-+++|.+|+++-+.+.....+|+.-|.-|.++|..+ .+.+.|+..-
T Consensus 525 ~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar~Kp~~nLTKSLLniy 580 (861)
T PF15254_consen 525 QILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSARCKPGNNLTKSLLNIY 580 (861)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCcchhHHHHHHHH
Confidence 567778888999999999999999999999999999999998776 4445555443
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.17 E-value=88 Score=39.82 Aligned_cols=28 Identities=4% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAK 1062 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~ 1062 (1237)
+..+.+..++..+..+..++++|+++..
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~ 136 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEE 136 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888888888766543
No 83
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.14 E-value=2e+02 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
..++.=+..++..+..++..+..+......=+..|-
T Consensus 148 ~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~ 183 (218)
T cd07596 148 EELEEELEEAESALEEARKRYEEISERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777666544444443
No 84
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=65.11 E-value=1.7e+02 Score=32.36 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHhc
Q 000884 1036 FHTQVSDLRSSLNVVNSAAEQVRN-----SAKLRRIMQTILSLG 1074 (1237)
Q Consensus 1036 f~~~v~dl~~~l~~v~~A~~el~~-----S~~L~~lL~~IL~lG 1074 (1237)
.+..++.+.+.+..+.+.|+.+++ |..-+.+...+..++
T Consensus 7 ~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~ 50 (207)
T cd07636 7 HEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFK 50 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777766 233444444444444
No 85
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.04 E-value=3.1e+02 Score=32.98 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1139 KIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRF---AEAEVRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1139 ki~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~---a~~~v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
+.-++.|+.|+..+++.|...+++ +.++|..+.++ .+.+...|+..+.+....-..||....|.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~-------------~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEs 318 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKS-------------YQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSES 318 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334455556665555555554433 22333333322 22333334444444444445566666665
Q ss_pred CCCCCHH--HHHHHHHHH
Q 000884 1216 PARCPFE--QAQIGVIRS 1231 (1237)
Q Consensus 1216 p~~~~~e--~~~s~l~~F 1231 (1237)
.....++ -+|..|++|
T Consensus 319 esslemdeery~Ne~~~~ 336 (552)
T KOG2129|consen 319 ESSLEMDEERYLNEFVDF 336 (552)
T ss_pred hHHHHHHHHHHHhhhhcc
Confidence 4433222 344444444
No 86
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.91 E-value=38 Score=38.28 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1038 TQVSDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1038 ~~v~dl~~~l~~v~~A~~el 1057 (1237)
+.+.++++.++.+..+|..+
T Consensus 15 edl~~iEkrvD~~k~~~~~i 34 (257)
T cd07620 15 EDLVLVEQRVEPAKKAAQLI 34 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 87
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.71 E-value=1.5e+02 Score=32.57 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhc
Q 000884 1034 IQFHTQVSDLRSSLNVVNSAAEQVRNS-----AKLRRIMQTILSLG 1074 (1237)
Q Consensus 1034 ~~f~~~v~dl~~~l~~v~~A~~el~~S-----~~L~~lL~~IL~lG 1074 (1237)
..+++.+.+++..++.+.+.|..+.++ ..-+.+.+.+..+|
T Consensus 4 ~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~ 49 (202)
T cd07606 4 QELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFG 49 (202)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888888888888887763 33445555555565
No 88
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.24 E-value=1.4e+02 Score=36.33 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccc--------CCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQELSMSE--------NDGA---ISENFSKILREFLRFAEAEVRTLASLYSAVGRNV 1205 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~el~~s~--------~d~~---~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~ 1205 (1237)
-+|+.+..||..+.+.|.+++..+.... .+-. ....|.....+++.+.+..+..+.+-|.-++...
T Consensus 250 ~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~ 326 (426)
T smart00806 250 KQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCC 326 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889988888888887765321 0000 0134555555666666666655555555544443
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.97 E-value=65 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1185 RFAEAEVRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1185 ~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
.....++..|+..+.++...|..+++.|||.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4455667788888888999999999999994
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.75 E-value=2.4e+02 Score=38.02 Aligned_cols=24 Identities=8% Similarity=0.439 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
.+....+.|+++++.++.+++.+.
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 91
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.56 E-value=37 Score=41.39 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
+.|..-+..+...-+.+....+++++.|.+++..|.|-
T Consensus 257 eel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 257 EELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666777788888888888888888773
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.39 E-value=25 Score=35.25 Aligned_cols=98 Identities=27% Similarity=0.259 Sum_probs=53.2
Q ss_pred ccchhHHHHHHHhhcCcccccccccccChHHHhh------hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHH
Q 000884 1106 KMTLMHYLCKVLADKLPELLDFSEDLTSLEPASK------IQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKI 1179 (1237)
Q Consensus 1106 k~tLLhylv~~l~~~~pell~f~~dL~~le~Ask------i~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~ 1179 (1237)
...++..+...|...-.++..+..++..+..... +.+-...+++++..+.+..++.++.... .. ...
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~------~r-y~t 86 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ------QR-YQT 86 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHH
Confidence 3445566666666655566666666655544322 1122222333444444555555443322 11 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALIL 1210 (1237)
Q Consensus 1180 l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~ 1210 (1237)
+-..+....+++.+|+.....++..|+....
T Consensus 87 ~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777778888888888877776543
No 93
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=63.22 E-value=2.2e+02 Score=31.99 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
..++.=+..++.++...+..|+++.+..++=+.-|-++ ...+|-..|..|+.
T Consensus 162 ~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~e----r~~dfk~~l~~fle 213 (234)
T cd07664 162 QQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKE----RVKDFKTVIIKYLE 213 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 35666777788888888888888888876666666543 35566666666553
No 94
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=62.95 E-value=61 Score=43.59 Aligned_cols=171 Identities=20% Similarity=0.223 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCccchhHHHHHHHhhcCcccc
Q 000884 1046 SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELL 1125 (1237)
Q Consensus 1046 ~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~~~pell 1125 (1237)
+|+.+..-..-+-.+.+|.+||=+++.+ ++...+ -.+..+|.-|.++-+...+.+=.+..+ ..+--||.+.
T Consensus 443 ALeLl~~lS~~i~de~~LDRVlPY~v~l---~~Ds~a-----~Vra~Al~Tlt~~L~~Vr~~~~~dani-F~eYlfP~L~ 513 (1431)
T KOG1240|consen 443 ALELLQELSTYIDDEVKLDRVLPYFVHL---LMDSEA-----DVRATALETLTELLALVRDIPPSDANI-FPEYLFPHLN 513 (1431)
T ss_pred HHHHHHHHhhhcchHHHHhhhHHHHHHH---hcCchH-----HHHHHHHHHHHHHHhhccCCCcccchh-hHhhhhhhhH
Confidence 3444444445555667889999888886 444433 344555555554433322211111100 0112256676
Q ss_pred ccccc-cc-ChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc------ccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1126 DFSED-LT-SLEPASKIQLKFLAEEMQALSKGLEKVVQELSM------SENDGAISENFSKILREFLRFAEAEVRTLASL 1197 (1237)
Q Consensus 1126 ~f~~d-L~-~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~------s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~ 1197 (1237)
.|..| .. .+..|-.-++..|+... -++-...+++.. -.++......|-..++...+..++.+.+|-..
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd 589 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD 589 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence 66666 22 23333233444433322 122222222211 11112223445555566666666666665432
Q ss_pred -----HHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHh
Q 000884 1198 -----YSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1198 -----~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~ 1232 (1237)
-..+.+....||.|||-..++ +-+++.|-.||
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk~ksN---D~iLshLiTfL 626 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGKEKSN---DVILSHLITFL 626 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhhcccc---cchHHHHHHHh
Confidence 234455589999999986544 44566666665
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.86 E-value=1.3e+02 Score=37.70 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1028 RVFSFKIQFHTQVSDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1028 ~~l~fk~~f~~~v~dl~~~l~~v~~A~~el 1057 (1237)
.+|-.+.+..+.+.+++..+..+..+...|
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666777777777776666655555
No 96
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=62.83 E-value=54 Score=31.92 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCC
Q 000884 1142 LKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTL-ASLYSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L-~~~~~~~~~~~~~l~~yFGEdp 1216 (1237)
+++|..|++.|...++.+-+.-..... ..-+..+.++..-++++..++... ...+.+.....+.+=.|.+|+|
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 367888888888888877654322211 123567888899999999999888 4566777788888889999987
No 97
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.70 E-value=95 Score=34.05 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhcc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNS-----AKLRRIMQTILSLGN 1075 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S-----~~L~~lL~~IL~lGN 1075 (1237)
+.+..+++++..|..+.+.|..+.++ ..-+.+.+.+-.+|-
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788888888888888888773 233444444444443
No 98
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=62.36 E-value=95 Score=30.50 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=51.2
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccce-eeccccceEEEecCCccccCCeEEEEE
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVR-TYKQAECELVKIDINCCIQGDVVLECI 281 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~-~y~~~d~~~i~i~~~~~v~GDV~i~~~ 281 (1237)
.++=+.-++++..+..+.|.||++|+..+ +.++.|....+... .|. +.+.|.+. .....+.|+++
T Consensus 3 ~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~t~nP~Wn----e~f~f~v~-~~~~~l~~~v~ 68 (121)
T cd04042 3 DIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYKNLNPVWD----EKFTLPIE-DVTQPLYIKVF 68 (121)
T ss_pred EEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccCCCCCccc----eeEEEEec-CCCCeEEEEEE
Confidence 44444555677777778899999999753 23454432111111 221 22444432 13567888888
Q ss_pred ecCCcccccceEEEEEecccccc
Q 000884 282 SLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+.+. ..+...|.++.|...=+.
T Consensus 69 D~d~-~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 69 DYDR-GLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred eCCC-CCCCcceEEEEEEHHHcC
Confidence 8654 335567888888777665
No 99
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=62.33 E-value=50 Score=35.72 Aligned_cols=21 Identities=5% Similarity=0.298 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000884 1037 HTQVSDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1037 ~~~v~dl~~~l~~v~~A~~el 1057 (1237)
+..++++...+..+...++.|
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 100
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=62.11 E-value=73 Score=33.89 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=37.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHH
Q 000884 1137 ASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEV 1191 (1237)
Q Consensus 1137 Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v 1191 (1237)
+.+.++..+.+++..|.+.+.++-+.|+.... ..|...+.++.-+..-.+.+
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~---~~~~~~~~~~~~~~~~~~~~ 162 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILELLEGQQK---TQDELKETIQKQIKTQGEQL 162 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCcc---chhHHHHHHHHHHhhhHHHH
Confidence 45678888999999999888888777764332 24667777777666655544
No 101
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=61.66 E-value=22 Score=38.97 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1146 AEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNV 1205 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~ 1205 (1237)
..+|.-++.+|++++-+-....-++..++.|...+..-..+.+++++.|++.+..+...+
T Consensus 185 ~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 185 EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 446777888888776544433445556677776666655555555555555544444333
No 102
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=61.15 E-value=41 Score=37.34 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1188 EAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1188 ~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
+.+|+..++.|.+-.+....+|.-+-+
T Consensus 160 e~elr~A~~kf~~~~E~a~~~M~~il~ 186 (220)
T cd07617 160 EHELRVAQTEFDRQAEVTRLLLEGISS 186 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443333333333333
No 103
>PRK11637 AmiB activator; Provisional
Probab=61.14 E-value=1.2e+02 Score=37.16 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1039 QVSDLRSSLNVVNSAAEQVR 1058 (1237)
Q Consensus 1039 ~v~dl~~~l~~v~~A~~el~ 1058 (1237)
.+.++...|..+...++++.
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 104
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.47 E-value=2.7e+02 Score=36.72 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDGAI-------SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~-------~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
+++.+...++++...|..++.+|......... ...-.+.+..-+..+++++..|......++..+.+-...-+
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~ 697 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSE 697 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44445555555555555555555432211110 01112233333444455555555555555555544444444
Q ss_pred cCCCCC
Q 000884 1214 EDPARC 1219 (1237)
Q Consensus 1214 Edp~~~ 1219 (1237)
|.-++|
T Consensus 698 e~~~kc 703 (769)
T PF05911_consen 698 ELEAKC 703 (769)
T ss_pred hhhhHH
Confidence 444433
No 105
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.27 E-value=1.5e+02 Score=32.91 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1185 RFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1185 ~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
..|+.+++..+..|.++.+...+-+..|-
T Consensus 138 ~eaE~~l~~a~~d~~r~s~~l~ee~~rFe 166 (211)
T cd07598 138 SQAESELQKASVDANRSTKELEEQMDNFE 166 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655554443
No 106
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=60.25 E-value=6.9 Score=43.46 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=47.7
Q ss_pred EEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCC---ccc
Q 000884 23 VYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCP---LLT 99 (1237)
Q Consensus 23 Iiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P---~p~ 99 (1237)
|||| +|.||.|- .. --..+.+||+ -+ +++-+|||+.+ |+..+... -.++-|-|.+-. -.-
T Consensus 14 ~ivm-VGLPArGK--s~---ia~kl~ryL~-w~-g~~~~vFn~g~--yRR~~~~~-------~~~~~ff~p~n~~~~~~R 76 (222)
T PF01591_consen 14 VIVM-VGLPARGK--SY---IARKLCRYLN-WL-GVKTKVFNVGD--YRRKLSGA-------PQDAEFFDPDNEEAKKLR 76 (222)
T ss_dssp EEEE-ESSTTSSH--HH---HHHHHHHHHH-HT-T--EEEEEHHH--HHHHHHSS--------S-GGGGSTT-HHHHHHH
T ss_pred EEEE-ECCCCCCH--HH---HHHHHHHHHh-hc-CCCcceeeccc--ceeccccc-------ccccccCCCCChHHHHHH
Confidence 5777 69999984 11 1256888888 33 34799999875 33222111 111111121111 012
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEe
Q 000884 100 MEVIHHFLRSTESWLSLGQHNVLMMHC 126 (1237)
Q Consensus 100 l~~l~~~~~~~~~wL~~d~~NVvvvHC 126 (1237)
.......+.+|.+||..+..+|++.=-
T Consensus 77 ~~~a~~~l~dl~~~l~~~~G~VAI~DA 103 (222)
T PF01591_consen 77 EQIAKEALEDLIEWLQEEGGQVAIFDA 103 (222)
T ss_dssp HHHHHHHHHHHHHHHHTS--SEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 244667888999999987777777643
No 107
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.44 E-value=2.4e+02 Score=38.31 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
-.++.+...+.++.+.+++.+.+..
T Consensus 405 E~lK~~~~k~kKleke~ek~~~~~~ 429 (1293)
T KOG0996|consen 405 EKLKRLTSKIKKLEKEIEKARRKKS 429 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3455555555556555555554443
No 108
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=59.10 E-value=38 Score=37.71 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=6.1
Q ss_pred HHHHhcccccccC
Q 000884 1069 TILSLGNALNQGT 1081 (1237)
Q Consensus 1069 ~IL~lGN~LN~gt 1081 (1237)
+.+..|+-|..++
T Consensus 72 ~M~~~g~elg~~S 84 (223)
T cd07592 72 VMLKYGRELGEDS 84 (223)
T ss_pred HHHHHHhhcCCCC
Confidence 3444555554444
No 109
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=58.88 E-value=28 Score=40.75 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=58.4
Q ss_pred eeeeCcEEEeeCCCC--CCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCC
Q 000884 17 LEISERVYVFNCCFT--TDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEG 94 (1237)
Q Consensus 17 tYIT~RIiam~~~fP--a~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~ 94 (1237)
.-+...|+.| |+. ..++.+..-.-...++.+.|++ + ++.|+..+...- |. +-+++ |
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~E----------~~--~GhI~----G 146 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDYE----------YE--IGHFE----N 146 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHHH----------Hh--cCcCC----C
Confidence 5667778888 774 3344333334556677777753 3 488999886521 11 11222 2
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHH
Q 000884 95 CPLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYR 145 (1237)
Q Consensus 95 ~P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~ 145 (1237)
+-.+++..+..+...+++.+...++.-|||||.+| .| +...++||...
T Consensus 147 Ai~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G-~R--s~~aa~~L~~~ 194 (314)
T PRK00142 147 AIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGG-IR--CEKASAWMKHE 194 (314)
T ss_pred CEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCC-cH--HHHHHHHHHHc
Confidence 21225555555544444444445667899999655 46 44556666543
No 110
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=58.65 E-value=96 Score=30.80 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=63.6
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEe
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECIS 282 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h 282 (1237)
.++-|.-++++. ..+.|.||+.|+..+... ...++++..+. + -.|. +.+.|++.- -...+.|+|++
T Consensus 2 ~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~--~~kT~v~~~t~----n-P~Wn----e~f~f~~~~-~~~~l~~~v~d 67 (126)
T cd08678 2 LVKNIKANGLSE--AAGSSNPYCVLEMDEPPQ--KYQSSTQKNTS----N-PFWD----EHFLFELSP-NSKELLFEVYD 67 (126)
T ss_pred EEEEEEecCCCC--CCCCcCCEEEEEECCCCc--EEEeEEEecCC----C-CccC----ceEEEEeCC-CCCEEEEEEEE
Confidence 455556667776 457899999999753110 01112222211 0 1221 224555421 24568889998
Q ss_pred cCCcccccceEEEEEeccccccCCeEEeecccCcccccCCCCCCCCcEEEEEEeecC
Q 000884 283 LNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSEMD 339 (1237)
Q Consensus 283 ~~~~~~~~~~~Fr~~FnT~FI~~n~l~~~k~eLD~~~~~k~~fp~dF~vel~F~~~~ 339 (1237)
.+. ..+...|.++.|...-+..+.-.-..-.|......+....-...++|.|.+..
T Consensus 68 ~~~-~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 68 NGK-KSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCC-CCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 764 34567889999988877632111111122211001234566677888886543
No 111
>PHA03378 EBNA-3B; Provisional
Probab=58.14 E-value=1.3e+02 Score=38.10 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHH
Q 000884 99 TMEVIHHFLRST 110 (1237)
Q Consensus 99 ~l~~l~~~~~~~ 110 (1237)
-+++++.+|.+|
T Consensus 107 viqL~hAaydA~ 118 (991)
T PHA03378 107 VIQLVHAVYDSM 118 (991)
T ss_pred HHHHHHHHHHHh
Confidence 567777777654
No 112
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=57.79 E-value=2.7e+02 Score=30.98 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
..++.=+..++.++...+..|..+....+.=+..|-.
T Consensus 152 ~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~ 188 (224)
T cd07623 152 DQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEK 188 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777776665666644
No 113
>PHA03246 large tegument protein UL36; Provisional
Probab=57.25 E-value=3.9e+02 Score=39.07 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccc-cchhhhhhhh-----hcccCCccchhHH
Q 000884 1039 QVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGF-RLDSLLKLTD-----TRARNNKMTLMHY 1112 (1237)
Q Consensus 1039 ~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GF-kL~sL~KL~d-----tKs~d~k~tLLhy 1112 (1237)
.+.+.+..+..+..++++-.+ +-..+|+-|+...+..-+ ..+.|| +|..|+||.- .|+.|+-.|.=+.
T Consensus 1649 Dl~~ak~al~~a~~a~~eAt~--Ra~~iLrevvea~~a~dr----~~ae~LANLKnLLRLtp~P~~iA~AIDkA~Sa~DI 1722 (3095)
T PHA03246 1649 DNDAIKSITQRVTTAIEAAKS--RGESILKDLAEASYAADR----ETAEQLANLKNLLRLVAMPAHIAKAIDKAETANDI 1722 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhcccCCCHHHHHHhhhcccHHHH
Confidence 344555566667777766654 455666666665444333 223333 3555666532 2223333332222
Q ss_pred HHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----ccCCCccchhHHHHHHHHHHHH
Q 000884 1113 LCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSM-----SENDGAISENFSKILREFLRFA 1187 (1237)
Q Consensus 1113 lv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~-----s~~d~~~~d~F~~~l~~Fl~~a 1187 (1237)
|-+. . -=|..+|++..+|.+.++ =|+..+.-|.. ...+.+..+.|.+.|.. |...
T Consensus 1723 VTQa-A----------LLL~~vEet~ELDvqAVe--------WL~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDa-L~~L 1782 (3095)
T PHA03246 1723 VTQA-A----------LLLTKVEETKELDTQTVE--------WLKHAESVIDSHDLTVRIDESGPMTIYAERIDA-LVRL 1782 (3095)
T ss_pred HHHH-H----------HHHHHhhhccccCHHHHH--------HHHHHHHHhccCccccccCCCCCcHHHHHHHHH-HHHH
Confidence 2211 1 012334444444443322 11112222222 11222345788888876 4456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000884 1188 EAEVRTLASLYSAVGRNVDALILYFGEDPAR 1218 (1237)
Q Consensus 1188 ~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1218 (1237)
..++.+|+..++..+..+++....||-+-.+
T Consensus 1783 R~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~~ 1813 (3095)
T PHA03246 1783 ENRLAELKSELALAEVAWDDTWSTFIHDKDR 1813 (3095)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhccCC
Confidence 6889999999999999999999999976443
No 114
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=57.12 E-value=3.1e+02 Score=32.22 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHH
Q 000884 972 EDSAIDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLEL 1017 (1237)
Q Consensus 972 D~~~L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l 1017 (1237)
+....+.|.-+.++-+|-..-++-++.+|.... .-...+.|.++|
T Consensus 32 ~ag~~spdf~~~i~wl~~Elr~L~k~eE~V~q~-~~~~~~eF~~el 76 (465)
T KOG3973|consen 32 MAGGISPDFANQIIWLCAELRELYKIEEYVRQP-NDHNLLEFLYEL 76 (465)
T ss_pred HcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHH
Confidence 345577777777777777777777777775443 334466777766
No 115
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=56.87 E-value=2.2e+02 Score=29.54 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHhcccccc
Q 000884 1043 LRSSLNVVNSAAEQVRN-----SAKLRRIMQTILSLGNALNQ 1079 (1237)
Q Consensus 1043 l~~~l~~v~~A~~el~~-----S~~L~~lL~~IL~lGN~LN~ 1079 (1237)
++..++.+...++.+.+ ......+-..+..+|+....
T Consensus 5 ~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 46 (194)
T cd07307 5 LEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPD 46 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33344444444444444 22455566666667766543
No 116
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.64 E-value=76 Score=39.90 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.8
Q ss_pred HHHHHHHhhc
Q 000884 962 PELMRSVLAL 971 (1237)
Q Consensus 962 ~el~~aIl~l 971 (1237)
.++.+.+..+
T Consensus 117 ~~l~~~Li~I 126 (557)
T COG0497 117 KELGQLLIDI 126 (557)
T ss_pred HHHHHhhhee
Confidence 3555555443
No 117
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=56.55 E-value=1.1e+02 Score=30.49 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=59.0
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCcc--cc-CCeEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQ-GDVVL 278 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~--v~-GDV~i 278 (1237)
|.++=|.=++++..+..+.|.||++|+..+.. +.++++-.+.. -.|. +.+.|.+.-. +. --+.|
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~----~rT~v~~~t~n-----P~Wn----e~f~f~~~~~~~~~~~~l~~ 68 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK----KRTRTKPKDLN-----PVWN----EKLVFNVSDPSRLSNLVLEV 68 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE----ecceeEcCCCC-----Cccc----eEEEEEccCHHHccCCeEEE
Confidence 34444455567776666789999999975411 12222222110 0121 2355554211 11 23566
Q ss_pred EEEecCCcccccceEEEEEecccccc-CCeEEeecccCcccccCCCCCCCCcEEEEEEe
Q 000884 279 ECISLNDDLEREEMMFRVVFNTAFIR-SNILMLNLDEVDILWNAKELFPKEFRAEILFS 336 (1237)
Q Consensus 279 ~~~h~~~~~~~~~~~Fr~~FnT~FI~-~n~l~~~k~eLD~~~~~k~~fp~dF~vel~F~ 336 (1237)
.+++.+........|.++.|.-.-+. .+.....+-+|..- ...++..-+..+.+.|.
T Consensus 69 ~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 69 YVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 77775432214667888888877665 33222222333321 11223444555555554
No 118
>PRK10404 hypothetical protein; Provisional
Probab=56.51 E-value=66 Score=31.36 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccCC
Q 000884 1143 KFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYS-AVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~-~~~~~~~~l~~yFGEdp 1216 (1237)
+.|..|++.|...++.+-+.-... .+..-+..+.++...++.+..++..+.+.+. +.......+-.|-.|+|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~--a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDP--ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456777888887777776543321 1222467788888899999888887776544 46777788888999876
No 119
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=56.22 E-value=72 Score=36.07 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.3
Q ss_pred HHHHHhcccccccCCc
Q 000884 1068 QTILSLGNALNQGTAR 1083 (1237)
Q Consensus 1068 ~~IL~lGN~LN~gt~r 1083 (1237)
++.+..|+-|+.++..
T Consensus 64 ~~M~~~g~~l~~~s~l 79 (244)
T cd07595 64 QSMLESSKELPDDSLL 79 (244)
T ss_pred HHHHHHHHhcCCCChH
Confidence 3345566666555433
No 120
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.07 E-value=73 Score=31.22 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1136 PASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILY 1211 (1237)
Q Consensus 1136 ~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~y 1211 (1237)
.|.+-+++.|.+.+....+.+..++++++..-+. +. ...|+--+.+.+.+++.+...++.+....+-|++.
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~----~d-v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTR----DD-VHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888899999999888765322 22 36778888889999999999998888777776653
No 121
>PRK01415 hypothetical protein; Validated
Probab=55.96 E-value=41 Score=38.04 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=57.9
Q ss_pred eeeCcEEEeeCCCCCCCcc--hhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884 18 EISERVYVFNCCFTTDAWE--EEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95 (1237)
Q Consensus 18 YIT~RIiam~~~fPa~~~~--e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~ 95 (1237)
-+-..|+.| |.+..... -+.| -.-.++.++|+. + .+.|...++..- |. +-+++ |+
T Consensus 91 r~k~eiV~~--g~~~~~~~~~~g~~-i~p~e~~~ll~~---~-~~vvIDVRn~~E----------~~--~Ghi~----gA 147 (247)
T PRK01415 91 RLKKEIVAM--NVDDLNVDLFKGEY-IEPKDWDEFITK---Q-DVIVIDTRNDYE----------VE--VGTFK----SA 147 (247)
T ss_pred EeeceEEec--CCCCCCccccCccc-cCHHHHHHHHhC---C-CcEEEECCCHHH----------Hh--cCCcC----CC
Confidence 356778888 56543211 1222 334456777763 2 388888887521 11 12221 22
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884 96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
-.+++..+-.|...++..+..+.+.-++|+|.+| .| +..+|++|...|
T Consensus 148 inip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgG-iR--s~kAa~~L~~~G 195 (247)
T PRK01415 148 INPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGG-IR--CEKSTSLLKSIG 195 (247)
T ss_pred CCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCC-hH--HHHHHHHHHHcC
Confidence 2235666555555444455556777899999655 46 566777776554
No 122
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=55.63 E-value=45 Score=33.36 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=27.6
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+....|+++=|.-++++..+..+.|.||++|+-.
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~ 43 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLK 43 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEE
Confidence 3456788887888889888877889999999974
No 123
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=54.78 E-value=17 Score=34.50 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEE
Q 000884 45 GGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMM 124 (1237)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvv 124 (1237)
+++.+.++ .+ ++.|...++... |.. .+.|- -.+. +++.+..+...+..++..+.+.-+||
T Consensus 7 ~~l~~~~~---~~-~~~iiDvR~~~e----------~~~--ghi~g-A~~i---p~~~~~~~~~~~~~~~~~~~~~~ivv 66 (101)
T cd01518 7 AEWNELLE---DP-EVVLLDVRNDYE----------YDI--GHFKG-AVNP---DVDTFREFPFWLDENLDLLKGKKVLM 66 (101)
T ss_pred HHHHHHHc---CC-CEEEEEcCChhh----------hhc--CEecc-ccCC---CcccHhHhHHHHHhhhhhcCCCEEEE
Confidence 45555554 23 488999987532 211 11211 1122 23334333444444444467778999
Q ss_pred EeccCCccchhHHHHHHHHHHc
Q 000884 125 HCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 125 HCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
+|..| .|. + ..|.+|...|
T Consensus 67 yC~~G-~rs-~-~a~~~L~~~G 85 (101)
T cd01518 67 YCTGG-IRC-E-KASAYLKERG 85 (101)
T ss_pred ECCCc-hhH-H-HHHHHHHHhC
Confidence 99766 463 3 3444554433
No 124
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=54.58 E-value=3.6e+02 Score=30.38 Aligned_cols=55 Identities=9% Similarity=0.181 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1174 ENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
|++ ..+..=+.+++.++...+..|.++.+..++=+.-|-++ ..++|=+.|..|++
T Consensus 159 dK~-~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~e----r~~Dfk~~v~~fle 213 (234)
T cd07665 159 DKL-QQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKE----KSKDFKNHIIKYLE 213 (234)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444 34566677788888888888888888876666666654 35555555666554
No 125
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.09 E-value=19 Score=40.73 Aligned_cols=107 Identities=18% Similarity=0.280 Sum_probs=51.4
Q ss_pred ccchhHHHHHHHhhcC----cc-----cccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhH
Q 000884 1106 KMTLMHYLCKVLADKL----PE-----LLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENF 1176 (1237)
Q Consensus 1106 k~tLLhylv~~l~~~~----pe-----ll~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F 1176 (1237)
+..+|+.||.++.+-. .+ +......|..++.| ++++..|.+.+.++....+...+ ....+......+..
T Consensus 124 RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa-~vkV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~ 201 (269)
T PF05278_consen 124 RSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESA-KVKVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRK 201 (269)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3367777776665431 11 11122223333443 67777777666555443222211 00000000112334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1177 SKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1177 ~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
.+..+.=++....+++..++.++++.....+++.-.|+
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666666666665
No 126
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=53.87 E-value=97 Score=31.52 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=48.8
Q ss_pred ceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEE
Q 000884 200 RALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLE 279 (1237)
Q Consensus 200 ~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~ 279 (1237)
..|.+.-+.-++++..+..+.|.||++|+.+.. .+.|........-... +.+.|.+.-.-...+.|+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~----------~~kT~vi~~t~nP~Wn---e~f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ----------EHKTKVVSDTLNPKWN---SSMQFFVKDLEQDVLCIT 81 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE----------eeeccccCCCCCCccC---ceEEEEecCccCCEEEEE
Confidence 356666566667887776788999999997541 2333221111111111 224444322223457788
Q ss_pred EEecCCcccccceEEEEEeccc
Q 000884 280 CISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
|++.+. ......|.++.|.-.
T Consensus 82 V~D~d~-~~~d~~lG~~~i~l~ 102 (136)
T cd08375 82 VFDRDF-FSPDDFLGRTEIRVA 102 (136)
T ss_pred EEECCC-CCCCCeeEEEEEEHH
Confidence 988763 334567777777554
No 127
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=53.59 E-value=88 Score=37.33 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000884 1139 KIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR 1218 (1237)
Q Consensus 1139 ki~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1218 (1237)
..++.+|...++.+++.++.+..+......-...-..|.+....-+......+.++++.+.++..-|.+-.. +..-
T Consensus 280 ~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~----~~~~ 355 (370)
T PF02181_consen 280 EQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPK----KMSP 355 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT----CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCH
Confidence 446788888888888887776551111111111245788888999999999999999999999888865443 1122
Q ss_pred CCHHHHHHHHHHHh
Q 000884 1219 CPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1219 ~~~e~~~s~l~~F~ 1232 (1237)
-.|+.++.+|.+-+
T Consensus 356 ~~ff~~l~~F~~~f 369 (370)
T PF02181_consen 356 EEFFKILSQFIDMF 369 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 25666666666544
No 128
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=53.53 E-value=75 Score=32.14 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-cc
Q 000884 195 WPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CI 272 (1237)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v 272 (1237)
+.+....|.++-|.-+.++..+..+.|.||++|+-.... + ......|....... -.| ++.+.|++.. .+
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~----~-~~~~~kT~v~~~t~nP~w----nE~F~f~i~~~~l 79 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL----K-LIKTKKTSCMRGTIDPFY----NESFSFKVPQEEL 79 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC----c-ccceEcCccccCCCCCcc----ceeEEEeCCHHHh
Confidence 334556788887888888888877889999999952200 0 00011111110000 011 1335565522 23
Q ss_pred cC-CeEEEEEecCCcccccceEEEEEeccccc
Q 000884 273 QG-DVVLECISLNDDLEREEMMFRVVFNTAFI 303 (1237)
Q Consensus 273 ~G-DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1237)
.. -+.|.|++.+. ..+...|.++.+....+
T Consensus 80 ~~~~l~~~V~d~d~-~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 ENVSLVFTVYGHNV-KSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCEEEEEEEeCCC-CCCCcEEEEEEEcCccC
Confidence 32 26678887653 34567888888776443
No 129
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=53.28 E-value=4.4 Score=51.85 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
++..++..+...+..|..-|++|--
T Consensus 157 e~~~R~~~v~~l~~~I~~l~~~L~~ 181 (619)
T PF03999_consen 157 EKERRLEEVRELREEIISLMEELGI 181 (619)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444555555445555555555543
No 130
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.27 E-value=56 Score=41.80 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1174 ENFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
+.+.+.+..|-+.....++.|+.+..++.+.++.+
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666666666666666555443
No 131
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.27 E-value=1.4e+02 Score=33.65 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=10.0
Q ss_pred cChhHHHHHHHhc-CccHHHHHH
Q 000884 1007 LGKCEQFFLELMK-VPRVESKLR 1028 (1237)
Q Consensus 1007 L~~~EqF~~~l~~-vp~l~~RL~ 1028 (1237)
..+.|.||.+... |..++.+|+
T Consensus 17 ~~E~D~~F~~~k~yi~~Le~~Lk 39 (234)
T cd07664 17 MNESDAWFEEKQQQFENLDQQLR 39 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH
Confidence 4445556655432 333444443
No 132
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=53.14 E-value=1.3e+02 Score=26.50 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=47.9
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCc-ccceeeccccceEEEecCCccccCCeEEEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRS-KAVRTYKQAECELVKIDINCCIQGDVVLEC 280 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~-~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~ 280 (1237)
|.++-+.-++++..+..+...||++|+..+.. ...+.|.... ...-.|. +.+.|.+...-..++.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~~~V 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKNTSNPVWN----EEFEFPLDDPDLDSLSFEV 69 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSSBSSEEEE----EEEEEEESHGCGTEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeeccccceee----eeeeeeeecccccceEEEE
Confidence 34555667778887767789999999987521 1334443221 1111222 3355655445555699999
Q ss_pred EecCCcccccceEEE
Q 000884 281 ISLNDDLEREEMMFR 295 (1237)
Q Consensus 281 ~h~~~~~~~~~~~Fr 295 (1237)
++.+.. ..++.+.+
T Consensus 70 ~~~~~~-~~~~~iG~ 83 (85)
T PF00168_consen 70 WDKDSF-GKDELIGE 83 (85)
T ss_dssp EEETSS-SSEEEEEE
T ss_pred EECCCC-CCCCEEEE
Confidence 987752 22445544
No 133
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=52.93 E-value=1.2e+02 Score=29.59 Aligned_cols=91 Identities=10% Similarity=0.119 Sum_probs=48.6
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEe
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECIS 282 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h 282 (1237)
.++-|.-++++..+..+.|.||++|+-.... .....++++..+.. -.|. +.+.|.+......-+.|++++
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~-~~~~kT~vv~~t~n-----P~Wn----e~f~f~i~~~~~~~l~v~v~d 72 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTAS-DEKKRTKTIKNSIN-----PVWN----ETFEFRIQSQVKNVLELTVMD 72 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCCC-CccCccceecCCCC-----Cccc----eEEEEEeCcccCCEEEEEEEE
Confidence 4444555567766656779999999864210 00112223322210 0121 235554433333346788888
Q ss_pred cCCcccccceEEEEEeccccccC
Q 000884 283 LNDDLEREEMMFRVVFNTAFIRS 305 (1237)
Q Consensus 283 ~~~~~~~~~~~Fr~~FnT~FI~~ 305 (1237)
.+.. ....|.++.|...=+..
T Consensus 73 ~d~~--~~~~iG~~~~~l~~l~~ 93 (119)
T cd04036 73 EDYV--MDDHLGTVLFDVSKLKL 93 (119)
T ss_pred CCCC--CCcccEEEEEEHHHCCC
Confidence 7642 55678888877765553
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.52 E-value=78 Score=37.29 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 000884 1043 LRSSLNVVNSAAEQ 1056 (1237)
Q Consensus 1043 l~~~l~~v~~A~~e 1056 (1237)
+..++..+..-|+.
T Consensus 120 m~~q~~~vK~~aRl 133 (325)
T PF08317_consen 120 MDNQFQLVKTYARL 133 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=51.91 E-value=5.7e+02 Score=33.39 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.4
Q ss_pred hhhcCHHHHHHHHhh
Q 000884 39 DYKKYIGGIIGQLRE 53 (1237)
Q Consensus 39 ~YRn~i~~V~~~L~~ 53 (1237)
+|+.-+.-|.+|.+.
T Consensus 39 ~ykhVVqsVeKfi~k 53 (894)
T KOG0132|consen 39 LYKHVVQSVEKFIKK 53 (894)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 136
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=51.15 E-value=71 Score=31.30 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCceeEEEeEEeeccCCcC-CCCCcceEEEEEec
Q 000884 198 LDRALTLDCVILRSIPNFD-GQGGCRPIFRIYGQ 230 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~-~~~gcrP~~~Iy~~ 230 (1237)
....|.+.-|.-++++..+ ..+.|.||++||-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~ 45 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEe
Confidence 4567788777788888877 46789999999963
No 137
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=50.05 E-value=1.2e+02 Score=30.04 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=50.3
Q ss_pred CceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCcc-ccCCe
Q 000884 199 DRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCC-IQGDV 276 (1237)
Q Consensus 199 ~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~-v~GDV 276 (1237)
...|.++=|.-++++..+ .+.|.||++||-... ........|....+.. -.| ++.|.|++.-. +.--+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-----~~~~~~~kT~v~~~t~~P~~----nE~F~f~v~~~~~~~~l 80 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-----KEVRFRQKTSTVPDSANPLF----HETFSFDVNERDYQKRL 80 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-----CCCcceEeCccccCCCCCcc----ccEEEEEcChHHhCCEE
Confidence 456778878888888877 678999999996431 1111122221111111 122 13466665322 22235
Q ss_pred EEEEEecCCcccccceEEEEEeccccc
Q 000884 277 VLECISLNDDLEREEMMFRVVFNTAFI 303 (1237)
Q Consensus 277 ~i~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1237)
.|.+++.+.....++.|.++.|.-.=+
T Consensus 81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 81 LVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred EEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 566666553222345777777665433
No 138
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=49.98 E-value=2.8e+02 Score=34.24 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcc----------cccccCCccccccccchhhhhhhhhcccCCccch
Q 000884 1040 VSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGN----------ALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTL 1109 (1237)
Q Consensus 1040 v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN----------~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tL 1109 (1237)
+.|+...+..+...|.+|.+ +....|- ..-+|....++..|.++.-.|+... .
T Consensus 185 Y~El~~~l~~lr~ec~~Ll~---------~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~--------~ 247 (441)
T PF12054_consen 185 YDELVPSLKRLRTECQQLLA---------TFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGE--------D 247 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHH--------H
Confidence 45677777778887877654 3333443 1224445566778888887776643 1
Q ss_pred hHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCccchhHHHHHHHHHHHH
Q 000884 1110 MHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMS--ENDGAISENFSKILREFLRFA 1187 (1237)
Q Consensus 1110 Lhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s--~~d~~~~d~F~~~l~~Fl~~a 1187 (1237)
...+.+.+..... + ..+..|+++ |-.+....++++..+..+.--....-++ -.-+.+-++.--.++..++..
T Consensus 248 ~~~l~~~l~~~~k-~----~a~~~Le~~-r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSI 321 (441)
T PF12054_consen 248 FEKLKKSLSPSQK-L----SALQALEDR-RQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSI 321 (441)
T ss_pred HHHHHHhcCCccc-c----hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHh
Confidence 2222222211100 0 112223333 2223222333333333222211111111 011112244556667777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHh
Q 000884 1188 EAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1188 ~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~ 1232 (1237)
+.|=. ..+..+..+....|+.++- +-+.|+-+.+++.|-.|+
T Consensus 322 K~Een--~~LQ~rsA~slA~Li~~~~-~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 322 KREEN--ELLQQRSAESLARLIQLCV-DRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred hcccc--HHHHHHHHHHHHHHHHHHh-CCCCCCcHHHHHHHhhhh
Confidence 66522 4555666666777777777 777788888888888887
No 139
>PHA03378 EBNA-3B; Provisional
Probab=49.48 E-value=2.6e+02 Score=35.63 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHH
Q 000884 99 TMEVIHHFLRSTES 112 (1237)
Q Consensus 99 ~l~~l~~~~~~~~~ 112 (1237)
.-.-+++++..++.
T Consensus 103 ~qa~viqL~hAayd 116 (991)
T PHA03378 103 TQAPVIQLVHAVYD 116 (991)
T ss_pred ccchHHHHHHHHHH
Confidence 55667777776655
No 140
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=2.5e+02 Score=36.50 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcccccccCCccccccccchhhhhhh----------hhcccCCccchhHHHHHHHhhcCcccccccccccC
Q 000884 1064 RRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLT----------DTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTS 1133 (1237)
Q Consensus 1064 ~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~----------dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~ 1133 (1237)
..+++.+|.+||-++.|.. .+.--+|..-..+. ..|. +..+.|..+.+++.+-...+..|...-..
T Consensus 176 a~~~~kLl~isnel~~~~f--~~tka~I~k~~~~lE~~lleeF~~~~R~--~n~~~m~~~a~iL~~F~G~v~~y~n~~d~ 251 (763)
T KOG3745|consen 176 ADRIKKLLLISNELPYGKF--SETKARIEKKYEVLEQNLLEEFNSAQRE--ENIKKMAEFAKILSEFKGVVRMYLNCVDD 251 (763)
T ss_pred HHHHHHHHHHhccCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHhcchHHHHHHhHHH
Confidence 4566778999999998831 11111111111111 1122 22456666666665533322222222111
Q ss_pred hHHH-------hhhh--HHHHHHHHHHHHHHHHHHHHHhh-cccC--CCccchhHHHHHHHHHHHHHHH----------H
Q 000884 1134 LEPA-------SKIQ--LKFLAEEMQALSKGLEKVVQELS-MSEN--DGAISENFSKILREFLRFAEAE----------V 1191 (1237)
Q Consensus 1134 le~A-------ski~--l~~L~~e~~~l~k~l~kl~~el~-~s~~--d~~~~d~F~~~l~~Fl~~a~~~----------v 1191 (1237)
+-++ .-+. +++|-.|+-.+.++-.++.++.- ..+. ..-+.+.|..+|++|++..-+. +
T Consensus 252 fid~~~~~~~~~fi~~~~~di~~D~~~l~~~~sk~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~~~~~l~yl 331 (763)
T KOG3745|consen 252 FIDSDEFQPEQPFISNILQDIFNDILKLCESESKFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKEGKDFLAYL 331 (763)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHhHhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 1111 1122 45555555555555444433321 1111 0012456777778777666555 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 000884 1192 RTLASLYSAVGRNVDALILYF 1212 (1237)
Q Consensus 1192 ~~L~~~~~~~~~~~~~l~~yF 1212 (1237)
+.|-.+|..+.+..++|..||
T Consensus 332 R~L~~Lys~~~k~~~~L~~~~ 352 (763)
T KOG3745|consen 332 RDLYGLYSSTLKLSKDLVDYF 352 (763)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 577788899999999999994
No 141
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.62 E-value=1.7e+02 Score=38.15 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=51.4
Q ss_pred ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhH---HHHHHHHHHHHHHHHHHHHH---
Q 000884 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENF---SKILREFLRFAEAEVRTLAS--- 1196 (1237)
Q Consensus 1123 ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F---~~~l~~Fl~~a~~~v~~L~~--- 1196 (1237)
+|..+..++..++...+.....+..+++.|...+..+++...... ...... ...+.....++...+...++
T Consensus 374 ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~q---eri~~LE~ELr~l~~~A~E~q~~LnsAQDELv 450 (717)
T PF09730_consen 374 ELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQ---ERISELEKELRALSKLAGESQGSLNSAQDELV 450 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 343444444444555555666667777777777766665332110 000111 12233333333333333333
Q ss_pred -HHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHH
Q 000884 1197 -LYSAVGRNVDALILYFGEDPARCPFEQAQIGVIR 1230 (1237)
Q Consensus 1197 -~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~ 1230 (1237)
.-..+...|..+|.-=||.|.+. +-++......
T Consensus 451 tfSEeLAqLYHHVC~cNgeTPnRV-mLD~yr~~r~ 484 (717)
T PF09730_consen 451 TFSEELAQLYHHVCMCNGETPNRV-MLDYYRQGRQ 484 (717)
T ss_pred HHHHHHHHHHHHHHHccCCCCccH-HHHHHHhhhh
Confidence 33445555777777778988874 4444444443
No 142
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.56 E-value=1.6e+02 Score=32.63 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcH-----HHHHHHHHHHHhc
Q 000884 1033 KIQFHTQVSDLRSSLNVVNSAAEQVRNSA-----KLRRIMQTILSLG 1074 (1237)
Q Consensus 1033 k~~f~~~v~dl~~~l~~v~~A~~el~~S~-----~L~~lL~~IL~lG 1074 (1237)
...+++.+.+|...++.|.++|..+.++. .-+.+...+..++
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~ 50 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYE 50 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999887742 3444445555554
No 143
>PF15605 Toxin_52: Putative toxin 52
Probab=47.70 E-value=78 Score=30.68 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1146 AEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLY 1198 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~ 1198 (1237)
.+||++..+||+++++.|+.+-.++..++.-++.++.-+.+|...|+.+++++
T Consensus 49 lqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 49 LQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788888999999988887767776677777778887888877777777665
No 144
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=47.22 E-value=99 Score=31.00 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-cccC
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CIQG 274 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v~G 274 (1237)
+....|.+.-+.-+.++..+..+.|.||++|+-...- .....+.|....... -.|. +.+.|.+.. .+..
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~-----~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~~~~ 81 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEG-----RRLKKKKTSVKKNTLNPTYN----EALVFDVPPENVDN 81 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCC-----cccceecCCcccCCCCCccc----ceEEEECCHHHhCC
Confidence 3456788888888889988877889999999953200 000112221111111 0111 234454422 1222
Q ss_pred -CeEEEEEecCCcccccceEEEEEeccc
Q 000884 275 -DVVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 275 -DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
.+.|+|++.+. .++.+.|.++.|...
T Consensus 82 ~~l~~~v~d~~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 82 VSLIIAVVDYDR-VGHNELIGVCRVGPN 108 (134)
T ss_pred CEEEEEEEECCC-CCCCceeEEEEECCC
Confidence 36777887653 345667888887544
No 145
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=47.12 E-value=97 Score=38.66 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000884 1192 RTLASLYSAVGRNVDALILYFGEDPAR 1218 (1237)
Q Consensus 1192 ~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1218 (1237)
+.|-.+++.+.....++.++||-+++.
T Consensus 576 K~llkL~~~i~~~sqkI~~~l~~ndkq 602 (802)
T TIGR03031 576 KALLKLIQTIPDISQKIQSHLGHNDKQ 602 (802)
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCHHH
Confidence 456677888888889999999987643
No 146
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=46.31 E-value=1.4e+02 Score=29.32 Aligned_cols=94 Identities=14% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-ccc-C
Q 000884 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CIQ-G 274 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v~-G 274 (1237)
....|.+.-|.-++++..+..+.|.||++|+-... .+..+.|....... -.|. +.+.|.+.. .+. .
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-------~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l~~~ 82 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-------KKKKFETKVHRKTLNPVFN----ETFTFKVPYSELGNK 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-------CCCceecccCcCCCCCcee----eeEEEeCCHHHhCCC
Confidence 44677888788888888777788999999996421 11233332211111 1121 235555432 233 2
Q ss_pred CeEEEEEecCCcccccceEEEEEeccccc
Q 000884 275 DVVLECISLNDDLEREEMMFRVVFNTAFI 303 (1237)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1237)
-+.|++++.+. ..+...|.++.|.-.-+
T Consensus 83 ~l~~~V~d~d~-~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 83 TLVFSVYDFDR-FSKHDLIGEVRVPLLTV 110 (124)
T ss_pred EEEEEEEeCCC-CCCCceeEEEEEecCcc
Confidence 46777777653 33455666666655543
No 147
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=46.31 E-value=1.2e+02 Score=29.76 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=52.7
Q ss_pred CCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-cccC-
Q 000884 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CIQG- 274 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v~G- 274 (1237)
....|.+.-+.-++++..+..+.|.||++|+-... .+.++.|....... -.| ++.+.|.+.. .+.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-------~~~~~kT~v~~~t~~P~w----ne~f~f~v~~~~l~~~ 82 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-------RSNTKQSKIHKKTLNPEF----DESFVFEVPPQELPKR 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-------CCCcEeCceEcCCCCCCc----ccEEEEeCCHHHhCCC
Confidence 44577777777888888887788999999997310 01123332111111 011 1335555422 1222
Q ss_pred CeEEEEEecCCcccccceEEEEEecccccc
Q 000884 275 DVVLECISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
-+.|+|++.+. ..+...|.++.|..+-+.
T Consensus 83 ~l~i~V~d~~~-~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 83 TLEVLLYDFDQ-FSRDECIGVVELPLAEVD 111 (124)
T ss_pred EEEEEEEECCC-CCCCceeEEEEEeccccc
Confidence 46677777653 344566777776666544
No 148
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=46.22 E-value=3.1e+02 Score=27.17 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1174 ENFSKILREFLRFAEAEVRTLAS----LYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~----~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
-.|.+.|+.-++.-+....+|+- +.+.+.+..+..+..||-.+ -.+.++|+.+..-++|
T Consensus 40 ~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~~--~~l~~~fd~m~~tLe~ 102 (108)
T PF08855_consen 40 KIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYTP--QDLSQMFDQMNQTLER 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCCc--chHHHHHHHHHHHHHH
Confidence 45777777777777777666652 45667788899999999987 3556777776665544
No 149
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.75 E-value=1.2e+02 Score=42.92 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Q 000884 1022 RVESKLRVFSFKIQF--HTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSL 1073 (1237)
Q Consensus 1022 ~l~~RL~~l~fk~~f--~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~l 1073 (1237)
.+..-|+-+++..+= ...|++++.+|..+....++|+.+.+++.+++-++..
T Consensus 212 ~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~ 265 (1486)
T PRK04863 212 AITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITE 265 (1486)
T ss_pred hHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhh
Confidence 344445555544332 2338899999999999999999999999999877654
No 150
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=45.52 E-value=64 Score=35.92 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 000884 1174 ENFSKILREFLRFAEAEVRTLA 1195 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~ 1195 (1237)
+.++..+.+|-+..+.....+.
T Consensus 157 eelr~a~ekFees~E~a~~~M~ 178 (223)
T cd07614 157 EELRQAMEKFEESKEVAETSMH 178 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444333
No 151
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=45.39 E-value=1.1e+02 Score=31.50 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=54.3
Q ss_pred cCCCCCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEe--ccCCccc-ce-eeccccceEEEe
Q 000884 191 VVSEWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYS--TSKRSKA-VR-TYKQAECELVKI 266 (1237)
Q Consensus 191 ~~~~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~s--t~~~~~~-~~-~y~~~d~~~i~i 266 (1237)
....+.|....|++.=+.=++++.+...++-.||++|+-... ++.+-. |...... .. .| ++.|.|
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-------~k~~~KkKT~v~k~t~~~P~f----NEsF~F 73 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-------GGLLYKKKTRLVKSSNGQVKW----GETMIF 73 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-------CCcceeecCccEECCCCCcee----cceEEE
Confidence 344455666778777777778888754566679999975321 111110 1000001 01 12 244778
Q ss_pred cCCccccCCeEEE--EEecCCcccccceEEEEEecccc
Q 000884 267 DINCCIQGDVVLE--CISLNDDLEREEMMFRVVFNTAF 302 (1237)
Q Consensus 267 ~~~~~v~GDV~i~--~~h~~~~~~~~~~~Fr~~FnT~F 302 (1237)
++..... ||.+. +++.+ ...+.+.|.++.|-..-
T Consensus 74 dv~~~~~-~v~l~v~v~d~~-~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 74 PVTQQEH-GIQFLIKLYSRS-SVRRKHFLGQVWISSDS 109 (135)
T ss_pred eCCchhh-eeEEEEEEEeCC-CCcCCceEEEEEECCcc
Confidence 7765555 45554 45443 24567788888887653
No 152
>PRK05320 rhodanese superfamily protein; Provisional
Probab=45.28 E-value=48 Score=37.71 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=54.4
Q ss_pred eeCcEEEeeCCCCCCCcchhhh-hcCHHHHHHHHhhhCC--CCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884 19 ISERVYVFNCCFTTDAWEEEDY-KKYIGGIIGQLREHSP--DSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95 (1237)
Q Consensus 19 IT~RIiam~~~fPa~~~~e~~Y-Rn~i~~V~~~L~~~h~--~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~ 95 (1237)
+-+-|++| |+++.+..+... .-...++.++++..+. +.+..|...++.. +|. .-+++ |+
T Consensus 90 ~k~eiv~~--g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~----------E~~--~Ghi~----GA 151 (257)
T PRK05320 90 LKREIITM--KRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF----------EVD--VGTFD----GA 151 (257)
T ss_pred hhhHHhhc--CCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH----------HHc--cCccC----CC
Confidence 44555566 565443212211 1334566677765431 1137888887753 121 11121 22
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884 96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
=.++++.+..+...+..++....+.-|+|+|.+|. | +..++.+|...|
T Consensus 152 iniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-R--s~~Aa~~L~~~G 199 (257)
T PRK05320 152 LDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI-R--CEKAAIHMQEVG 199 (257)
T ss_pred EeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-H--HHHHHHHHHHcC
Confidence 12356666555554444444335567999997664 6 555666665433
No 153
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=2.9e+02 Score=36.89 Aligned_cols=203 Identities=19% Similarity=0.275 Sum_probs=115.0
Q ss_pred cCCCHHHHHHHhc----cc-------CCccccChhHHHHHHHhcCccHHHHH-HHHHHHHHHHHHH----------HHHH
Q 000884 987 FCPTKEEMDLLKG----YT-------GDKEKLGKCEQFFLELMKVPRVESKL-RVFSFKIQFHTQV----------SDLR 1044 (1237)
Q Consensus 987 ~~Pt~eE~~~L~~----~~-------~~~~~L~~~EqF~~~l~~vp~l~~RL-~~l~fk~~f~~~v----------~dl~ 1044 (1237)
+|.++++.+++.+ |. ++-..=+.+-++|+..+...|=++.| .++.|..+...+. ....
T Consensus 357 mc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkd 436 (1010)
T KOG1991|consen 357 MCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKD 436 (1010)
T ss_pred cCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhh
Confidence 6778888888775 21 22233445667777777777744443 4566666555432 2234
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccc------cccCCccccccccchhhhhhh--hhcccCCccchhHHHHHH
Q 000884 1045 SSLNVVNSAAEQVRNSAKLRRIMQTILSLGNAL------NQGTARGAAIGFRLDSLLKLT--DTRARNNKMTLMHYLCKV 1116 (1237)
Q Consensus 1045 ~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~L------N~gt~rg~A~GFkL~sL~KL~--dtKs~d~k~tLLhylv~~ 1116 (1237)
..|..+..-|+-|++...++..|+..|. |++ |.|.-|..| ...|.++. |.|+.++-.+.||.+.+.
T Consensus 437 GAL~~vgsl~~~L~K~s~~~~~mE~flv--~hVfP~f~s~~g~Lrara----c~vl~~~~~~df~d~~~l~~ale~t~~~ 510 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKKSPYKSQMEYFLV--NHVFPEFQSPYGYLRARA----CWVLSQFSSIDFKDPNNLSEALELTHNC 510 (1010)
T ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHH--HHhhHhhcCchhHHHHHH----HHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 6788888889999998899999998876 222 233333222 23466666 445555556677777776
Q ss_pred HhhcCccccccccccc-ChHHHhhhhH---------HHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHH
Q 000884 1117 LADKLPELLDFSEDLT-SLEPASKIQL---------KFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRF 1186 (1237)
Q Consensus 1117 l~~~~pell~f~~dL~-~le~Aski~l---------~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~ 1186 (1237)
+.+. .+|. .+++|-.++. ..+...+-.+-+.|-++.++. + .|.....|+.|+..
T Consensus 511 l~~d--------~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~---E-----nd~Lt~vme~iV~~ 574 (1010)
T KOG1991|consen 511 LLND--------NELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV---E-----NDDLTNVMEKIVCK 574 (1010)
T ss_pred hccC--------CcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc---c-----hhHHHHHHHHHHHH
Confidence 6531 2222 2344433221 112222222333333333332 2 24566777788777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000884 1187 AEAEVRTLA-SLYSAVGRNVDALILY 1211 (1237)
Q Consensus 1187 a~~~v~~L~-~~~~~~~~~~~~l~~y 1211 (1237)
-.+++.-.. ++.+.+.+.|-+++.-
T Consensus 575 fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 575 FSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 777776554 4566666777777764
No 154
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.99 E-value=4.1e+02 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYF 1212 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yF 1212 (1237)
++|..|=......+..+++++..+...+.++...|
T Consensus 159 ekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 159 EKLRAFDQQSSSIFSEIEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445554444455555555555555555555555
No 155
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.92 E-value=97 Score=30.82 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEe
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECIS 282 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h 282 (1237)
++.-|.-++++..+..+.|.||++|+.++... ...++.+..+. + -.|. +.+.|+....-...+.|+|++
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~~kT~~v~~t~----n-P~Wn----e~f~f~~~~~~~~~L~~~V~d 71 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI--NDRDNYIPNTL----N-PVFG----KMFELEATLPGNSILKISVMD 71 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECCeec--cceeeEEECCC----C-Cccc----eEEEEEecCCCCCEEEEEEEE
Confidence 34445555677777778899999999864210 00111121110 0 0111 234454322223357778887
Q ss_pred cCCcccccceEEEEEeccc
Q 000884 283 LNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 283 ~~~~~~~~~~~Fr~~FnT~ 301 (1237)
.+. .+....|.++.+...
T Consensus 72 ~d~-~~~dd~iG~~~i~l~ 89 (124)
T cd04037 72 YDL-LGSDDLIGETVIDLE 89 (124)
T ss_pred CCC-CCCCceeEEEEEeec
Confidence 653 334556666665543
No 156
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.76 E-value=3.6e+02 Score=34.54 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccC
Q 000884 1045 SSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARN 1104 (1237)
Q Consensus 1045 ~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d 1104 (1237)
-.+..+..||+.||.|-.+-++-+-+-.+..++-..-.|....-|.|++|++-.|.++.+
T Consensus 149 ~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l~e~~dlsgId 208 (797)
T KOG2211|consen 149 MVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSLLEVLDLSGID 208 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHHHHHhhhcchH
Confidence 457788999999998875544444433322222222234445668888888887777754
No 157
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=44.67 E-value=1.4e+02 Score=35.02 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000884 1184 LRFAEAEVRTLASLYSAVG 1202 (1237)
Q Consensus 1184 l~~a~~~v~~L~~~~~~~~ 1202 (1237)
++....+..++.....+++
T Consensus 241 I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 158
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=44.56 E-value=57 Score=32.17 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=27.1
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+....|.++-+.-++++..+..+.|.||++|+..
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~ 46 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC
Confidence 3456777877777888888777889999999973
No 159
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=44.40 E-value=2e+02 Score=33.41 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1148 EMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVG 1202 (1237)
Q Consensus 1148 e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~ 1202 (1237)
+++.|+..|..+-..++..+......-.+.++|++|+..-+.--..|.+...++.
T Consensus 230 e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~ 284 (307)
T PF15112_consen 230 EMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLD 284 (307)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 4555555555554444433322222346778888888766554444554444443
No 160
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=44.19 E-value=5.4e+02 Score=29.94 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=10.2
Q ss_pred cchhHHHHHHHhhc
Q 000884 1107 MTLMHYLCKVLADK 1120 (1237)
Q Consensus 1107 ~tLLhylv~~l~~~ 1120 (1237)
.||-|.|.+.....
T Consensus 120 KTl~~ALSraa~~s 133 (289)
T PF10455_consen 120 KTLYHALSRAALTS 133 (289)
T ss_pred ccHHHHHHHHHHHh
Confidence 58888888776543
No 161
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=44.15 E-value=2.2e+02 Score=35.49 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=7.1
Q ss_pred HHHHHHcccCC
Q 000884 1206 DALILYFGEDP 1216 (1237)
Q Consensus 1206 ~~l~~yFGEdp 1216 (1237)
..|+.|||-.+
T Consensus 454 ~~l~~~f~v~~ 464 (473)
T PF14643_consen 454 ESLCQFFGVRE 464 (473)
T ss_pred HHHHHHhCCcc
Confidence 56777777543
No 162
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=43.93 E-value=4.3e+02 Score=29.49 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1177 SKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1177 ~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
.+++..=++.+...+...++.|....+.++.+...|-++
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~ 190 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNRE 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777788888888888888887777777766553
No 163
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=43.86 E-value=3.8e+02 Score=33.82 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=42.6
Q ss_pred hHHHHHHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000884 1110 MHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1110 Lhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
++-+.+.+.+++-+-..+..+|....++.+|+|.+...++++++++++.+.+|
T Consensus 380 l~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkE 432 (546)
T PF07888_consen 380 LQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKE 432 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667778888888899999999999999999999887665
No 164
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=43.67 E-value=4.9e+02 Score=28.79 Aligned_cols=25 Identities=0% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+.+..++++...|..|.+.|+.+.+
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~ 30 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLIS 30 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888877
No 165
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=43.64 E-value=1.9e+02 Score=28.01 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCccccCCeEEEEE
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCCIQGDVVLECI 281 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~v~GDV~i~~~ 281 (1237)
++.-+.-++++..+..+.|.||++|+.++. .+.|....+.. -.|. +.|.|.+.-.-..-+.|+++
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~----------~~kT~v~~~t~nP~Wn----e~f~f~~~~~~~~~l~v~v~ 68 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGNE----------KYKSKVCSKTLNPQWL----EQFDLHLFDDQSQILEIEVW 68 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECCE----------eEecccccCCCCCcee----EEEEEEecCCCCCEEEEEEE
Confidence 344445556777666677999999997541 22222111000 0121 23445432222345666777
Q ss_pred ecCCcccccceEEEEEecccccc
Q 000884 282 SLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+.+. ......|.++.|+-+-+.
T Consensus 69 d~~~-~~~~~~iG~~~~~l~~l~ 90 (116)
T cd08376 69 DKDT-GKKDEFIGRCEIDLSALP 90 (116)
T ss_pred ECCC-CCCCCeEEEEEEeHHHCC
Confidence 7653 344567888877755444
No 166
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.44 E-value=2.9e+02 Score=31.16 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=23.3
Q ss_pred ccChhHHHHHHHh-cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1006 KLGKCEQFFLELM-KVPRVESKLRVFSFKI-QFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1006 ~L~~~EqF~~~l~-~vp~l~~RL~~l~fk~-~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+..+.|.||.... .|..++..|+-+.-.. ....+-.++...+..+..++..|-+
T Consensus 16 k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~ 71 (234)
T cd07665 16 KMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGS 71 (234)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555665443 2445555554332211 1222223444444444444444433
No 167
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=42.97 E-value=95 Score=31.25 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=51.5
Q ss_pred CCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-cc
Q 000884 195 WPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CI 272 (1237)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v 272 (1237)
+.+....|.++-|.-+.++..+..+.|.||++|+-... ......+.|....... -.|. +.+.|++.. .+
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~-----~~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l 80 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-----GKRLKKKKTTIKKRTLNPYYN----ESFSFEVPFEQI 80 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC-----CcccceeeccceeCCCCCccc----ceEEEECCHHHh
Confidence 33455678888788888888877778999999996420 0000112222111111 1121 235555422 23
Q ss_pred cC-CeEEEEEecCCcccccceEEEEEecc
Q 000884 273 QG-DVVLECISLNDDLEREEMMFRVVFNT 300 (1237)
Q Consensus 273 ~G-DV~i~~~h~~~~~~~~~~~Fr~~FnT 300 (1237)
.+ .+.|++++.+. .++.+.|.++.|--
T Consensus 81 ~~~~l~~~v~d~~~-~~~~~~iG~~~i~~ 108 (136)
T cd08402 81 QKVHLIVTVLDYDR-IGKNDPIGKVVLGC 108 (136)
T ss_pred CCCEEEEEEEeCCC-CCCCceeEEEEECC
Confidence 32 46778887653 34455666666553
No 168
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.73 E-value=1.1e+02 Score=32.33 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000884 1143 KFLAEEMQALSKGLEKVVQELSMSENDGAISENFS--KILREFLRFAEAEVRTLASLYSAVGRNVDALILYF 1212 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~--~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yF 1212 (1237)
.....+.+++++.+.++++|+..-.. .|+|. .+++.=++.+++|++++++.....+..++....++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~----qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISA----QDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-T----TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888765322 24564 45677777777777777777766666666655554
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.64 E-value=1.1e+02 Score=37.12 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1146 AEEMQALSKGLEKVVQELSMSEND----GAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~~d----~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
+..++++...++++.+++...+.. -...+....++++-.+.-++.+.+.++....+++..++|+-|+-
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 344555555666665555432110 00135677788888888888888888888888899999887774
No 170
>PHA02562 46 endonuclease subunit; Provisional
Probab=42.52 E-value=3.1e+02 Score=34.62 Aligned_cols=35 Identities=9% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Q 000884 1038 TQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLG 1074 (1237)
Q Consensus 1038 ~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lG 1074 (1237)
..+++++..++.+...++.+.. .+..+=.-+..++
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~--~l~~l~~~i~~l~ 247 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKA--EIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 3344444444444444444433 3333334444444
No 171
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.48 E-value=1.1e+02 Score=26.61 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1143 KFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGR 1203 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~ 1203 (1237)
++|++++..+...+..++++. +.+++-++..++.++.|-.+|+.+.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en--------------~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKEN--------------EEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666666666555543 33444555555555556566655543
No 172
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.20 E-value=8.9e+02 Score=31.80 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhcccCCCc-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1150 QALSKGLEKVVQELSMSENDGA-----ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1150 ~~l~k~l~kl~~el~~s~~d~~-----~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
.+|+..++.++.|+....+... .-+.....+++-+..|-.. ..|++.|++++....+.++.=+
T Consensus 669 s~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~-~~lkek~e~l~~e~~~~~~~~~ 736 (762)
T PLN03229 669 SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNS-SELKEKFEELEAELAAARETAA 736 (762)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhcc-HhHHHHHHHHHHHHHHhhcccc
Confidence 3466667777777754433211 1123444455555554432 4677888888877766665543
No 173
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.97 E-value=5.1e+02 Score=31.66 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHhcccc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSA-KLRRIMQTILSLGNAL 1077 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~-~L~~lL~~IL~lGN~L 1077 (1237)
.+...+..++..|..+....+.|..-+ .=+.+|..+|+.-+.+
T Consensus 84 ~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 84 ETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555666666666665554433 4456666666655554
No 174
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=41.95 E-value=1.2e+02 Score=29.39 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=48.0
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECI 281 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~ 281 (1237)
|.+.-+.-++++..+..+.|.||++|+-++.. ..++++..... + -.|. +.+.|.+.....-.+.|+|+
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~~~---n-P~Wn----e~f~f~v~~~~~~~l~i~v~ 70 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT----KKTKTDFRGGQ---H-PEWD----EELRFEITEDKKPILKVAVF 70 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCc----cccccccCCCC---C-CccC----ceEEEEecCCCCCEEEEEEE
Confidence 44555555677776666789999999976521 12222322110 0 0121 22445443223345788899
Q ss_pred ecCCcccccceEEEEEecccc
Q 000884 282 SLNDDLEREEMMFRVVFNTAF 302 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~F 302 (1237)
+.+.. . ...|.++.|...=
T Consensus 71 d~~~~-~-~~~iG~~~~~l~~ 89 (118)
T cd08681 71 DDDKR-K-PDLIGDTEVDLSP 89 (118)
T ss_pred eCCCC-C-CcceEEEEEecHH
Confidence 86542 2 5678888876653
No 175
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=41.87 E-value=1.6e+02 Score=29.35 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCceeEEEeEEeeccCCcCCC-CCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-ccc
Q 000884 197 PLDRALTLDCVILRSIPNFDGQ-GGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CIQ 273 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v~ 273 (1237)
+....|.++-|.-++++..+.. ++|.||++||-.... ...-.+.|......+ -.|. +.|.|++.. .+.
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~~n----E~f~f~v~~~~l~ 82 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK-----SNRGKRKTSVKKKTLNPVFN----ETLRYKVEREELP 82 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC-----CccccccCccCcCCCCCccC----ceEEEECCHHHhC
Confidence 3456788888888899988865 789999999974210 000011221111111 0121 336665532 233
Q ss_pred C-CeEEEEEecCCcccccceEEEEEecccccc
Q 000884 274 G-DVVLECISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 274 G-DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+ .+.|.|++.+. ..+...|.++.|.-+.+.
T Consensus 83 ~~~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 83 TRVLNLSVWHRDS-LGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CCEEEEEEEeCCC-CCCCcEeEEEEEecCccc
Confidence 3 46677887653 445567777777666553
No 176
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=41.72 E-value=2.3e+02 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.6
Q ss_pred hcHHHHHHHHHHHHhccccccc
Q 000884 1059 NSAKLRRIMQTILSLGNALNQG 1080 (1237)
Q Consensus 1059 ~S~~L~~lL~~IL~lGN~LN~g 1080 (1237)
+...|++++..++.+.|..+.+
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~ 35 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSI 35 (139)
T ss_pred CchhHHHHHHHHHHHHhhhccc
Confidence 4667788888877777766654
No 177
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=41.48 E-value=1.8e+02 Score=27.78 Aligned_cols=84 Identities=6% Similarity=0.010 Sum_probs=43.8
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCccccCCeEEEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCCIQGDVVLEC 280 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~v~GDV~i~~ 280 (1237)
|.+.-+.-++++..+..+.|.||++|+-++. .+.|....... -.|. +.+.|.+.-.-...+.|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~----------~~kT~v~~~t~nP~Wn----e~f~f~v~~~~~~~l~v~v 67 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKT----------TQKSKVKERTNNPVWE----EGFTFLVRNPENQELEIEV 67 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCE----------EEeCccccCCCCCccc----ceEEEEeCCCCCCEEEEEE
Confidence 3444445556777666678999999998641 22232111111 1121 2244544222233567777
Q ss_pred EecCCcccccceEEEEEeccccc
Q 000884 281 ISLNDDLEREEMMFRVVFNTAFI 303 (1237)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~FnT~FI 303 (1237)
+..+. ...|.++.|+-.-+
T Consensus 68 ~d~~~----~~~iG~~~i~l~~l 86 (105)
T cd04050 68 KDDKT----GKSLGSLTLPLSEL 86 (105)
T ss_pred EECCC----CCccEEEEEEHHHh
Confidence 76543 34567777665543
No 178
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.37 E-value=1.7e+02 Score=32.97 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=6.1
Q ss_pred HhcHHHHHHHHHH
Q 000884 1058 RNSAKLRRIMQTI 1070 (1237)
Q Consensus 1058 ~~S~~L~~lL~~I 1070 (1237)
..|+.|+.||..-
T Consensus 5 s~~~~f~~FLts~ 17 (240)
T cd07667 5 SFNEHFNVFLTAK 17 (240)
T ss_pred ccChHHHHHHcch
Confidence 3444555555443
No 179
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.35 E-value=1.6e+02 Score=33.31 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=20.4
Q ss_pred cccChHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000884 1130 DLTSLEPASKIQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1130 dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
+|..+++.-++-++.|..+++.++..|+.+..+
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasd 134 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASD 134 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455566666666666666666666666655443
No 180
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=41.32 E-value=4.3e+02 Score=34.64 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
.-+.+++.+...|+....-|++|-.
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~le~ 51 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDELES 51 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666533
No 181
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.00 E-value=3.6e+02 Score=29.73 Aligned_cols=42 Identities=5% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALN 1078 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN 1078 (1237)
..+..|+++...|+.|.+.|+.+.++- +.+....-++.+-||
T Consensus 6 ~hE~ele~~~~~IkkliK~~~~li~a~--K~~s~A~r~Fa~~L~ 47 (207)
T cd07633 6 CYEQELERTNKFIKDVIKDGNALISAI--KEYSSAVQKFSQTLQ 47 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 456678888899999999999988843 344444444444443
No 182
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=41.00 E-value=1e+02 Score=31.70 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=51.9
Q ss_pred CCCCCceeEEEeEEeeccCCcC--CCCCcceEEEEEecCCCccc-CCCCcEEEeccCCcccceeeccccceEEEecCCcc
Q 000884 195 WPPLDRALTLDCVILRSIPNFD--GQGGCRPIFRIYGQDPFVAN-DRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC 271 (1237)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~--~~~gcrP~~~Iy~~~~~~~~-~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~ 271 (1237)
+.+....|.+.-+.-++++..+ ..+||.||++||-....-+. .+.+++...+.. -.| ++.|.|++.-.
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n-----Pvf----NE~f~F~v~~~ 80 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN-----PVW----NEMIMFELPSE 80 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC-----Ccc----ccEEEEECCHH
Confidence 4456677888888888888776 34779999999964310000 000111111100 012 24567766433
Q ss_pred ccCC--eEEEEEecCCcccccceEEEEEeccc
Q 000884 272 IQGD--VVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 272 v~GD--V~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
-..+ +.|.+++.+. .++.+.|.++.|...
T Consensus 81 ~L~~~~L~~~V~d~d~-~~~~d~iG~v~lg~~ 111 (138)
T cd08407 81 LLAASSVELEVLNQDS-PGQSLPLGRCSLGLH 111 (138)
T ss_pred HhCccEEEEEEEeCCC-CcCcceeceEEecCc
Confidence 3233 5566666543 345566777776654
No 183
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.34 E-value=5.2e+02 Score=32.02 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=7.9
Q ss_pred hcCccHHHHHHHH
Q 000884 1018 MKVPRVESKLRVF 1030 (1237)
Q Consensus 1018 ~~vp~l~~RL~~l 1030 (1237)
...+.|..|+++-
T Consensus 334 vGF~dL~~R~K~Q 346 (508)
T KOG3091|consen 334 VGFEDLRQRLKVQ 346 (508)
T ss_pred cchHHHHHHHHHH
Confidence 3455677777653
No 184
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=40.31 E-value=5.3e+02 Score=28.84 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccC
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDAL-ILYFGED 1215 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l-~~yFGEd 1215 (1237)
++++.=+..+..++...++.|...-..++.. -.||.++
T Consensus 164 eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~ 202 (251)
T cd07653 164 EKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTD 202 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666677777787777777665 5677775
No 185
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=40.24 E-value=2.1e+02 Score=28.12 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+....|.+.-|.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~ 46 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLL 46 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEE
Confidence 3457788888888899988877889999999974
No 186
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=40.01 E-value=1.4e+02 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=21.8
Q ss_pred eEEEeEEeeccCCcCCC-CCcceEEEEEec
Q 000884 202 LTLDCVILRSIPNFDGQ-GGCRPIFRIYGQ 230 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1237)
|.++-+.-++++..+.. +.|.||++|+-.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~ 32 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFA 32 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEc
Confidence 45555666678877766 789999999864
No 187
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=39.89 E-value=5.1e+02 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1186 FAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1186 ~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
.++.+++.+++.|.+..+....++.=+-+... +.++.|.+|+++
T Consensus 167 ~~e~elr~ae~efees~E~a~~~m~~i~~~~~-----e~~~~L~~lv~A 210 (229)
T cd07616 167 AAEQELRITQSEFDRQAEITRLLLEGISSTHA-----HHLRCLNDFVEA 210 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhcCh-----HHHHHHHHHHHH
Confidence 35777777777777777777777766665221 455666666553
No 188
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=39.86 E-value=1.7e+02 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=18.5
Q ss_pred EeEEeeccCCcCCCCCcceEEEEEecC
Q 000884 205 DCVILRSIPNFDGQGGCRPIFRIYGQD 231 (1237)
Q Consensus 205 ~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1237)
.=|.-++++..+..+.|.||++|+..+
T Consensus 4 ~vi~a~~L~~~~~~~~~dpyv~v~~~~ 30 (115)
T cd04040 4 DVISAENLPSADRNGKSDPFVKFYLNG 30 (115)
T ss_pred EEEeeeCCCCCCCCCCCCCeEEEEECC
Confidence 334444566666567799999999753
No 189
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=39.79 E-value=1.2e+02 Score=30.83 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEE--eccCCcccc-eeeccccceEEEecCCcc
Q 000884 195 WPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLY--STSKRSKAV-RTYKQAECELVKIDINCC 271 (1237)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~--st~~~~~~~-~~y~~~d~~~i~i~~~~~ 271 (1237)
+-+....|.+.=|.-++++..+..+.|.||++|+-... .++.+. .|....+.. -.| ++.|.|++...
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~------~~~~~~~~kT~v~~~t~nPvf----nEtF~f~i~~~ 79 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS------DGQEISKSKTSIRRGQPDPEF----KETFVFQVALF 79 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC------CCcceeeccceeecCCCCCcE----eeeEEEECCHH
Confidence 33455678888888888988887788999999987421 111111 111100000 012 23466665322
Q ss_pred ccC--CeEEEEEecCCcccccceEEEEEeccc
Q 000884 272 IQG--DVVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 272 v~G--DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
=-. .+.|.+++.+. ..+++.|.++.|.-.
T Consensus 80 ~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~ 110 (138)
T cd08408 80 QLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLN 110 (138)
T ss_pred HhCccEEEEEEEECCC-CCCCcEEEEEEECCc
Confidence 122 34456666553 445667777766543
No 190
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.73 E-value=5e+02 Score=32.48 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=38.0
Q ss_pred ccccccccccCCCChHHHHHHHhhccCC-CCCHHHHHHHHhcCCCHHHHHHHh--cccCCccccCh--hHHHHHHHhcCc
Q 000884 947 AYNCEIMLSKVKVPLPELMRSVLALEDS-AIDADQVENLIKFCPTKEEMDLLK--GYTGDKEKLGK--CEQFFLELMKVP 1021 (1237)
Q Consensus 947 a~Ni~I~L~klk~~~~el~~aIl~lD~~-~L~~e~l~~Ll~~~Pt~eE~~~L~--~~~~~~~~L~~--~EqF~~~l~~vp 1021 (1237)
|+||+ .....-...|++..=++.|+. +.-.+.++.|+.+.-..|..+.+. ++.|.+.+... +-+|+++...+.
T Consensus 213 A~Ni~--~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~ 290 (593)
T KOG2460|consen 213 AYNII--GPESNGFIDELMQSREQKDEELVKLLESVDFLISIQTSTESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIE 290 (593)
T ss_pred hhhcc--CccccchHHHHHHhhccCCchhhhhhhccchhhhcchhhhhhcceeEEEecCcccccccHHHHHHHHHHHhhc
Confidence 56654 333223566777766666655 333455566666422223333333 24555554443 458888776554
No 191
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=39.61 E-value=3.4e+02 Score=35.22 Aligned_cols=183 Identities=19% Similarity=0.224 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHhcccccccCCcccccccc-chhhhhhhhhcccCCccchhH
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRN--SAKLRRIMQTILSLGNALNQGTARGAAIGFR-LDSLLKLTDTRARNNKMTLMH 1111 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~--S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFk-L~sL~KL~dtKs~d~k~tLLh 1111 (1237)
-|.++-.+..--|.-+-..++++-. -..|..|+..||. .||.-+++-...|-+ +++|.++..++.. --||.
T Consensus 767 Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~---rLnnksa~vRqqaadlis~la~Vlktc~e---e~~m~ 840 (1172)
T KOG0213|consen 767 AFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILW---RLNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMG 840 (1172)
T ss_pred HHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHH
Confidence 3444433333344555566666654 5667888888876 477776433223333 3556666555432 23554
Q ss_pred HH----HHHHhhcCcccccccc-cccChHHH---hhh--hHHHH--------HHHHHHHHHHHHHHHHHhhcccCCCccc
Q 000884 1112 YL----CKVLADKLPELLDFSE-DLTSLEPA---SKI--QLKFL--------AEEMQALSKGLEKVVQELSMSENDGAIS 1173 (1237)
Q Consensus 1112 yl----v~~l~~~~pell~f~~-dL~~le~A---ski--~l~~L--------~~e~~~l~k~l~kl~~el~~s~~d~~~~ 1173 (1237)
++ -+.+.+.+||++.+.- -|..+-.. .|. .+++| .+.-+++..+.-.+...+... ++
T Consensus 841 ~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr---gp-- 915 (1172)
T KOG0213|consen 841 HLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR---GP-- 915 (1172)
T ss_pred HhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc---Cc--
Confidence 43 3555666777765421 11111110 010 02222 111122221111122222211 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 000884 1174 ENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~d 1233 (1237)
.| --.++|+.-+-+-+..|+..-+++.+.. ..-||--.+.....+|+.+|++-+|
T Consensus 916 -E~-v~aREWMRIcfeLlelLkahkK~iRRaa---~nTfG~IakaIGPqdVLatLlnnLk 970 (1172)
T KOG0213|consen 916 -EY-VSAREWMRICFELLELLKAHKKEIRRAA---VNTFGYIAKAIGPQDVLATLLNNLK 970 (1172)
T ss_pred -cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHhcCHHHHHHHHHhcch
Confidence 12 2357788888777766666666665444 4456666666788899999998776
No 192
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=38.84 E-value=1.3e+02 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 000884 1175 NFSKILREFLRFAEAEVRTLAS 1196 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~~ 1196 (1237)
.|...+..|+..++..+..+++
T Consensus 219 ~~~~~~~~~~~~~~~~i~~vr~ 240 (276)
T PF12889_consen 219 SFMSSADSFKSSAKSFIRRVRD 240 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777666666666
No 193
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.81 E-value=23 Score=46.63 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=10.8
Q ss_pred HHHHHHHhcHHHHHHHHHH
Q 000884 1052 SAAEQVRNSAKLRRIMQTI 1070 (1237)
Q Consensus 1052 ~A~~el~~S~~L~~lL~~I 1070 (1237)
+.+++||.++.++.+.-+.
T Consensus 627 klM~QIraCKd~KhliyY~ 645 (2365)
T COG5178 627 KLMKQIRACKDWKHLIYYA 645 (2365)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 4455666666666655443
No 194
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.62 E-value=2.6e+02 Score=37.88 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHhcccccc
Q 000884 1039 QVSDLRSSLNVVNSAAEQVRN----SAKLRRIMQTILSLGNALNQ 1079 (1237)
Q Consensus 1039 ~v~dl~~~l~~v~~A~~el~~----S~~L~~lL~~IL~lGN~LN~ 1079 (1237)
++.+++.++..+..-.+++.+ -.....+=..|-.+||..=.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q 903 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ 903 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH
Confidence 344444455555544444421 12344444455566655433
No 195
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.60 E-value=1.2e+02 Score=28.84 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccCC
Q 000884 1144 FLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASL-YSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1144 ~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~-~~~~~~~~~~l~~yFGEdp 1216 (1237)
+|.+++..+...++.+.........+ ..+..+..+.+.++.+...+..+... ..++.+....+-.|--|+|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~--~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGE--KADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 35556666666666665554322111 12455666777777777666655543 3344555666677777765
No 196
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=38.37 E-value=1.7e+02 Score=29.52 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.5
Q ss_pred CCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
....|.+.-|.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~ 45 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLY 45 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEE
Confidence 445677777888888888877889999999863
No 197
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.33 E-value=1.6e+02 Score=34.58 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=9.2
Q ss_pred hHHHHHH-HhcCccHH
Q 000884 1010 CEQFFLE-LMKVPRVE 1024 (1237)
Q Consensus 1010 ~EqF~~~-l~~vp~l~ 1024 (1237)
-++|+.+ .+.||.++
T Consensus 51 l~~~v~A~~~~iP~LE 66 (312)
T smart00787 51 LDQYVVAGYCTVPLLE 66 (312)
T ss_pred HHHHHHHhcCCCcHHH
Confidence 4555655 56778755
No 198
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=38.27 E-value=1.6e+02 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 198 LDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
....|.+.-+.-++++..+..+.+.||++|+-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~ 44 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL 44 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEE
Confidence 445677777777888887766789999999864
No 199
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=37.64 E-value=4.4e+02 Score=29.09 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000884 1042 DLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1042 dl~~~l~~v~~A~~el 1057 (1237)
++...+..+..++..|
T Consensus 36 ela~~~~efa~~~~~L 51 (216)
T cd07627 36 ELASATEEFAETLEAL 51 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 200
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=37.43 E-value=2.2e+02 Score=27.57 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=11.7
Q ss_pred CCCcEEEEEeccCCcc
Q 000884 117 GQHNVLMMHCERGGWP 132 (1237)
Q Consensus 117 d~~NVvvvHCk~Gkgr 132 (1237)
+.++-+||||..|+.|
T Consensus 60 ~~~~~iv~yC~~~~~r 75 (113)
T cd01531 60 SKKDTVVFHCALSQVR 75 (113)
T ss_pred CCCCeEEEEeecCCcc
Confidence 4567899999855556
No 201
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=37.35 E-value=3e+02 Score=39.21 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=49.0
Q ss_pred ccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1127 FSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVD 1206 (1237)
Q Consensus 1127 f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~ 1206 (1237)
...||.-|-+- .-.|..++.++..+...+..+.++..+-+++.+. =......++.+|..+...+.....
T Consensus 979 ~~~Dl~gv~al-qrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Pa----------ea~~i~~r~~el~~~w~~l~~~~~ 1047 (2473)
T KOG0517|consen 979 LGNDLAGVMAL-QRRLQGLERDLAAIEAKVAALEKEANKVEEEHPA----------EAQAINARIAELQALWEQLQQRLQ 1047 (2473)
T ss_pred cCcchHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455443332 2346666777777777777777665544443321 112234455666666666666666
Q ss_pred HHHHHcccCCCCCCHHHHHHHHHHH
Q 000884 1207 ALILYFGEDPARCPFEQAQIGVIRS 1231 (1237)
Q Consensus 1207 ~l~~yFGEdp~~~~~e~~~s~l~~F 1231 (1237)
+...-.||.. ....|+.++.+|
T Consensus 1048 ~~~~~l~ea~---~lQ~Fl~dld~f 1069 (2473)
T KOG0517|consen 1048 EREERLEEAG---GLQRFLRDLDDF 1069 (2473)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHH
Confidence 6666666644 334444444444
No 202
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=37.18 E-value=1.1e+02 Score=33.41 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred ccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1123 ELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1123 ell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
++..|.++|.+++. -.+..|..+..+|+..++++++.|.
T Consensus 102 ~f~kiRsel~S~e~---sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 102 DFAKIRSELVSIER---SEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766554 3566677777788888887776654
No 203
>PRK04654 sec-independent translocase; Provisional
Probab=37.13 E-value=1.9e+02 Score=31.76 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000884 1175 NFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp 1216 (1237)
.+++.|+++....+.--..|++...++++..+.+..|++.|.
T Consensus 58 ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~~~ 99 (214)
T PRK04654 58 ELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSRDI 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 455555555544444445566666677777777778888764
No 204
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=37.01 E-value=2.9e+02 Score=32.49 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000884 1190 EVRTLASLYSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1190 ~v~~L~~~~~~~~~~~~~l~~yFGEdp 1216 (1237)
.+..|+.++.+++....+....||--.
T Consensus 302 ~~~~Le~~~~~~~~W~~~~~k~F~k~n 328 (335)
T PF08429_consen 302 ELSDLEKQLKRAEDWMEKAKKLFLKKN 328 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 556788889999999999999998643
No 205
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.96 E-value=5.9e+02 Score=27.76 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
....+.+++.+|+..+..++.+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666554
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.84 E-value=9.7e+02 Score=31.57 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSEND----GAISENFSKILREFLRFAEAEVRTLASLYSAVGRN 1204 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d----~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~ 1204 (1237)
.++.++..++++++.+++.+..++..++. ....+.=.+.|++-|..-..+|+++-+..+++++.
T Consensus 647 ~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 647 QLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777665555422211 12344556677777777777766666665555543
No 207
>PRK10869 recombination and repair protein; Provisional
Probab=36.71 E-value=3e+02 Score=35.05 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh
Q 000884 1048 NVVNSAAEQVRNSAKLRRIMQTILSL 1073 (1237)
Q Consensus 1048 ~~v~~A~~el~~S~~L~~lL~~IL~l 1073 (1237)
+.+..-.+.|.+..++...++.++.+
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~~~ 233 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNALQL 233 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777776666553
No 208
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=36.69 E-value=1e+02 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=27.3
Q ss_pred CCCceeEEEeEEeeccCCcCCC-CCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQ-GGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1237)
.....|.++=|.-++++..+.. +.|.||++|+-.
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~ 47 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL 47 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe
Confidence 3456788888888999988876 779999999753
No 209
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=36.67 E-value=8.2e+02 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1191 VRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1191 v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
+-.++..|+.+...|+.++++|||.
T Consensus 906 ~p~~~~~ledL~qRy~a~LqmyGEk 930 (961)
T KOG4673|consen 906 VPGIKAELEDLRQRYAAALQMYGEK 930 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3456677788888888889999984
No 210
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=36.52 E-value=2.1e+02 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=17.1
Q ss_pred HHHHHhcccccccCCccccccccchhhhhhhhhcc
Q 000884 1068 QTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRA 1102 (1237)
Q Consensus 1068 ~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs 1102 (1237)
++.+..|+-|..++.-|.|----=+.+.+|++.+.
T Consensus 64 q~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~ 98 (246)
T cd07618 64 QNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELS 98 (246)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776666443322111134555555543
No 211
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=36.46 E-value=46 Score=40.92 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=46.0
Q ss_pred EEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCccc-HHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHH
Q 000884 60 FLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLT-MEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFML 138 (1237)
Q Consensus 60 y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~-l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~i 138 (1237)
-.|.|+++..... ....-..++++++.....----. ...|-.+|..+..+|..++++-++|+|..||-..-|+++
T Consensus 320 ~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaL 395 (451)
T PF04179_consen 320 DCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVAL 395 (451)
T ss_pred CEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHH
Confidence 3566666543210 01223445676665433221011 255667777888888887788899999999977545555
Q ss_pred HHH
Q 000884 139 AAL 141 (1237)
Q Consensus 139 a~y 141 (1237)
|.|
T Consensus 396 aIL 398 (451)
T PF04179_consen 396 AIL 398 (451)
T ss_pred HHH
Confidence 544
No 212
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=6.4e+02 Score=29.50 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1032 FKIQFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1032 fk~~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+...|...+++|+..++.+..-++.|..
T Consensus 34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~ 61 (297)
T KOG0810|consen 34 NLEEFFEDVEEIRDDIEKLDEDVEKLQK 61 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777776666654
No 213
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.36 E-value=3.6e+02 Score=31.78 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=9.0
Q ss_pred hHHHHHHHh-cCccHH
Q 000884 1010 CEQFFLELM-KVPRVE 1024 (1237)
Q Consensus 1010 ~EqF~~~l~-~vp~l~ 1024 (1237)
-++++.++. .+|.++
T Consensus 56 l~~~~~A~~~~~P~Le 71 (325)
T PF08317_consen 56 LEDYVVAGYCTVPMLE 71 (325)
T ss_pred HHHHHHHhccCChHHH
Confidence 345555554 888755
No 214
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=36.27 E-value=3e+02 Score=29.71 Aligned_cols=51 Identities=24% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccc--CCCCCCHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLAS----LYSAVGRNVDALILYFGE--DPARCPFEQAQIGV 1228 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~----~~~~~~~~~~~l~~yFGE--dp~~~~~e~~~s~l 1228 (1237)
++|..++.+.++.+..-++ ...+.++...++.+|||. |+..--|++.+.+.
T Consensus 142 ~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqqk 198 (225)
T KOG4848|consen 142 KKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQK 198 (225)
T ss_pred HHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHH
Confidence 5555666666655544433 344566778889999997 66665677666554
No 215
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=36.11 E-value=2.5e+02 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
.+..|.+.+..|++.++++...
T Consensus 72 ~i~Sl~~~f~~lk~~l~~C~~~ 93 (137)
T smart00188 72 HVNSLGEKLKTLRLRLRRCHRF 93 (137)
T ss_pred hHHHHHHHHHHHHHHHHHCccc
Confidence 4556677777777777766443
No 216
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=36.04 E-value=1.2e+03 Score=30.91 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=39.4
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccC
Q 000884 1017 LMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGT 1081 (1237)
Q Consensus 1017 l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt 1081 (1237)
+.+.+.+++..+.+.-|.+...++.+++..+..... +..-..|+.--+++-.||-+-+.+.
T Consensus 808 ~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~----i~~ldELk~RkRVLrrLG~~t~ddv 868 (1041)
T KOG0948|consen 808 LHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQA----ILQLDELKNRKRVLRRLGYCTSDDV 868 (1041)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 345566677777777788888888888877765433 3333445555556667887766554
No 217
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.01 E-value=8.7e+02 Score=29.62 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=15.3
Q ss_pred CChHHHHHHHhhccCCCCCHH
Q 000884 959 VPLPELMRSVLALEDSAIDAD 979 (1237)
Q Consensus 959 ~~~~el~~aIl~lD~~~L~~e 979 (1237)
++..||+..|..++-..-+.+
T Consensus 9 L~~aEIv~~l~~~~i~~at~e 29 (446)
T KOG4438|consen 9 LSVAEIVICLKDAQIASATEE 29 (446)
T ss_pred CCHHHHHHHHHhcCcccchhh
Confidence 577889988888876654444
No 218
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=35.89 E-value=2.8e+02 Score=32.47 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=24.9
Q ss_pred hcCCCHHHHHHHhcccCCccccChhHHHHHHHhcCccH
Q 000884 986 KFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRV 1023 (1237)
Q Consensus 986 ~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~l 1023 (1237)
..-||++|.+..... ...|.++++++..|-.+...
T Consensus 9 na~Pt~~E~ev~~~v---~~VL~~~~~iL~~L~~Yrga 43 (303)
T PF07159_consen 9 NAQPTEEEREVYNEV---NEVLEEGEQILQDLYTYRGA 43 (303)
T ss_pred CCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccCc
Confidence 456899988877664 34577788888877666543
No 219
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=35.82 E-value=5.3e+02 Score=27.70 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccccc
Q 000884 1062 KLRRIMQTILSLGNALN 1078 (1237)
Q Consensus 1062 ~L~~lL~~IL~lGN~LN 1078 (1237)
+++.+++-+=.+-+||.
T Consensus 55 ~i~~l~k~~~eL~~YLD 71 (174)
T PF07426_consen 55 RIKELFKRIEELNKYLD 71 (174)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34444444444444443
No 220
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=35.58 E-value=2.9e+02 Score=27.09 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecC
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQD 231 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1237)
|.+.-|.-+.++..+..+.|.||++|+..+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~ 31 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG 31 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC
Confidence 344444555666666557799999999754
No 221
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=35.48 E-value=2.5e+02 Score=29.59 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 000884 1175 NFSKILREFLRFAEAEVRTLA 1195 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~ 1195 (1237)
.|.+.++......+.-+..+.
T Consensus 121 ~FLeTIK~IASaIKkLLd~vN 141 (207)
T KOG4025|consen 121 AFLETIKLIASAIKKLLDAVN 141 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444443333333
No 222
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=35.08 E-value=5.2e+02 Score=29.33 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHH
Q 000884 1182 EFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGV 1228 (1237)
Q Consensus 1182 ~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l 1228 (1237)
.|+++- .++-+..++......++.||.-+.+ -+|+-+..|
T Consensus 285 kfLeEN-----rIkVmh~QL~llhnAiaAYfsGNak--~LE~tlkqf 324 (341)
T KOG3876|consen 285 KFLEEN-----RIKVMHKQLELLHNAIAAYFSGNAK--QLEQTLKQF 324 (341)
T ss_pred HHHHhh-----hHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHh
Confidence 466553 2334566677778899999988632 344444433
No 223
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.93 E-value=1.5e+02 Score=33.85 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHccc-CCCCCCHHHHH
Q 000884 1183 FLRFAEAEVRTLASLYSAVGRNV----DALILYFGE-DPARCPFEQAQ 1225 (1237)
Q Consensus 1183 Fl~~a~~~v~~L~~~~~~~~~~~----~~l~~yFGE-dp~~~~~e~~~ 1225 (1237)
-|++|..+|+.|++..+.|.+.. +-+-+||-. +-++..+|.++
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHH
Confidence 45556666666666666555443 345666654 23334444443
No 224
>smart00721 BAR BAR domain.
Probab=34.85 E-value=6.4e+02 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1186 FAEAEVRTLASLYSAVGRNV 1205 (1237)
Q Consensus 1186 ~a~~~v~~L~~~~~~~~~~~ 1205 (1237)
.++.++...++.|..+...+
T Consensus 174 ~~e~el~~ak~~fe~~~~~l 193 (239)
T smart00721 174 KAEEELRKAKQEFEESNAQL 193 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544443
No 225
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=34.83 E-value=5.2e+02 Score=30.31 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=18.8
Q ss_pred CChHHHHHHHhhccCCCCCHHHH-HHHHhcCCCHH
Q 000884 959 VPLPELMRSVLALEDSAIDADQV-ENLIKFCPTKE 992 (1237)
Q Consensus 959 ~~~~el~~aIl~lD~~~L~~e~l-~~Ll~~~Pt~e 992 (1237)
.++.++...|.+.+...+....+ ..|..++-..+
T Consensus 17 ~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~ 51 (335)
T PF08429_consen 17 PSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAE 51 (335)
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 45566666666655554444443 66666664443
No 226
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.81 E-value=4.2e+02 Score=28.57 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000884 1150 QALSKGLEKVVQE 1162 (1237)
Q Consensus 1150 ~~l~k~l~kl~~e 1162 (1237)
+.+...++.+...
T Consensus 109 ~~~~~~~~~~~~~ 121 (204)
T PF04740_consen 109 NQLKEQIEDLQDE 121 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 227
>PRK11020 hypothetical protein; Provisional
Probab=34.73 E-value=2.5e+02 Score=27.84 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000884 1145 LAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLY-SAVGRNVDAL 1208 (1237)
Q Consensus 1145 L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~-~~~~~~~~~l 1208 (1237)
+.+|++.|...|++++..+.+....+ +......+..-++..+.+|..|+... .++.+...++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rg--d~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRG--DAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999888776654332 13334444555556666777776543 3455555555
No 228
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=34.41 E-value=8.1e+02 Score=31.03 Aligned_cols=55 Identities=7% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccc
Q 000884 1016 ELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALN 1078 (1237)
Q Consensus 1016 ~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN 1078 (1237)
-.+.-|.+++||++.- -.+++..+.|..+..-|++|.. .++.+-..+-++...||
T Consensus 11 ~~ldsp~fre~l~~he------~el~~tnkfik~~ikdg~~li~--a~knls~a~~kfa~tl~ 65 (812)
T KOG1451|consen 11 CYLDSPDFRERLKCHE------VELDRTNKFIKELIKDGKELIS--ALKNLSSAVRKFAQTLQ 65 (812)
T ss_pred cccCChHHHHHhhHHH------HHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3456788999988643 2334444455555555555544 33443334444444443
No 229
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=34.38 E-value=99 Score=32.81 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=66.0
Q ss_pred eCcEEEeeCCCCCCCcchhhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC----
Q 000884 20 SERVYVFNCCFTTDAWEEEDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC---- 95 (1237)
Q Consensus 20 T~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~---- 95 (1237)
..+|+|. +|=++..-...|. ...+.+..|++. +. -.+|++-..+....+......||-.|..||..-.+.
T Consensus 21 ~~~l~AT--s~ds~~~l~~kY~-~~~~nl~~L~~~--g~-~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~ 94 (166)
T PF10354_consen 21 ATNLVAT--SYDSEEELLQKYP-DAEENLEELREL--GV-TVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGK 94 (166)
T ss_pred CCeEEEe--ecCchHHHHHhcc-cHHHHHHHHhhc--CC-ccccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchh
Confidence 5689998 4665432244555 345777888443 33 556888776644333222356888888898643111
Q ss_pred -Cc-ccHHHHHHHHHHHHHHHHcCCCcEEEEEecc
Q 000884 96 -PL-LTMEVIHHFLRSTESWLSLGQHNVLMMHCER 128 (1237)
Q Consensus 96 -P~-p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~ 128 (1237)
-. ..-++|..|++++..-|.. .+.|.|-||.+
T Consensus 95 ~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~ 128 (166)
T PF10354_consen 95 RNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDG 128 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 00 2348999999999999886 57899999973
No 230
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.32 E-value=1e+03 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccc
Q 000884 1041 SDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNA 1076 (1237)
Q Consensus 1041 ~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~ 1076 (1237)
.++......+..-++.+++...+...+++....|+.
T Consensus 197 ~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~ 232 (511)
T PF09787_consen 197 QELEERPKALRHYIEYLRESGELQEQLELLKAEGES 232 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444445556666667777777777776666654
No 231
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.16 E-value=3.1e+02 Score=34.02 Aligned_cols=49 Identities=22% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccC---Cccccccccch
Q 000884 1044 RSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGT---ARGAAIGFRLD 1092 (1237)
Q Consensus 1044 ~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt---~rg~A~GFkL~ 1092 (1237)
...+.....+.+..+-++.+.+-....+.++|.+|.+- -++...||+.+
T Consensus 338 ~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s 389 (568)
T KOG2396|consen 338 LHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDS 389 (568)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcch
Confidence 34455555555555667778888888888999999874 12344566654
No 232
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.13 E-value=6.7e+02 Score=27.55 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000884 1034 IQFHTQVSDLRSSLNVVNSAAEQVRNS 1060 (1237)
Q Consensus 1034 ~~f~~~v~dl~~~l~~v~~A~~el~~S 1060 (1237)
.+.+..+++|+..|+.+.+.|..+.++
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~~~~~d~ 31 (200)
T cd07637 5 DEVETDVVEIEAKLDKLVKLCSGMIEA 31 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999885
No 233
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.05 E-value=7.9e+02 Score=30.29 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1175 NFSKILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
...+.+.+---.|.+.+++|++.+.+.+.....+
T Consensus 393 ~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444433344444455555544444444333
No 234
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.95 E-value=1.3e+02 Score=40.44 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=40.2
Q ss_pred CcccccccccccChHHHhhh---------hHHHH-HHHHHHHHHHHHHHHHHhhcccCCCcc---chhH------HHHHH
Q 000884 1121 LPELLDFSEDLTSLEPASKI---------QLKFL-AEEMQALSKGLEKVVQELSMSENDGAI---SENF------SKILR 1181 (1237)
Q Consensus 1121 ~pell~f~~dL~~le~Aski---------~l~~L-~~e~~~l~k~l~kl~~el~~s~~d~~~---~d~F------~~~l~ 1181 (1237)
.|....+.+-|+.|+.|.|. +-+-. ..-++++...++++++++.++....++ .+.| ++.+.
T Consensus 368 SPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~ 447 (1041)
T KOG0243|consen 368 SPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMA 447 (1041)
T ss_pred CCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHH
Confidence 46666666667777776652 10000 112445555666666666554433222 3455 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1182 EFLRFAEAEVRTLASLYSAVGRN 1204 (1237)
Q Consensus 1182 ~Fl~~a~~~v~~L~~~~~~~~~~ 1204 (1237)
.-++..+.++..++..+..+.+.
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 235
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.76 E-value=4.1e+02 Score=28.14 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=15.9
Q ss_pred hcccccccCCccccccccchhhhh
Q 000884 1073 LGNALNQGTARGAAIGFRLDSLLK 1096 (1237)
Q Consensus 1073 lGN~LN~gt~rg~A~GFkL~sL~K 1096 (1237)
+|--||... .|.||+-++..+
T Consensus 36 vg~~L~RTs---AACGFRWNs~VR 56 (161)
T TIGR02894 36 VGRALNRTA---AACGFRWNAYVR 56 (161)
T ss_pred HHHHHcccH---HHhcchHHHHHH
Confidence 677777754 589999988775
No 236
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.72 E-value=4.1e+02 Score=33.69 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 000884 1143 KFLAEEMQALSKGLEK 1158 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~k 1158 (1237)
+.|+.+++.+...+.+
T Consensus 345 ~~Le~~~~~l~~~~~~ 360 (557)
T COG0497 345 EALEKEVKKLKAELLE 360 (557)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 237
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=33.63 E-value=1.4e+02 Score=30.43 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 194 EWPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 194 ~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
.+.+....|.+.-|.-++++..+..+.|.||++||-.
T Consensus 9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~ 45 (136)
T cd08406 9 SYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLL 45 (136)
T ss_pred EEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE
Confidence 3445667888888888999988877889999999874
No 238
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.55 E-value=1.4e+03 Score=31.07 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=16.4
Q ss_pred ChHHHHHHHhhccCCCCCHHHHHHHHhcCCCH
Q 000884 960 PLPELMRSVLALEDSAIDADQVENLIKFCPTK 991 (1237)
Q Consensus 960 ~~~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~ 991 (1237)
+-.+|...+.+++- +|.+|-.|+|.+
T Consensus 125 t~s~i~elv~~fNI------Qi~NLCqFLpQD 150 (1072)
T KOG0979|consen 125 TKSEIEELVAHFNI------QIDNLCQFLPQD 150 (1072)
T ss_pred hhHHHHHHHHHHhc------ccCchhhhccHH
Confidence 34455555555552 567888888865
No 239
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=33.50 E-value=1.8e+02 Score=28.55 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+....|.+.-|.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~ 46 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEc
Confidence 3456677777777888887777889999999974
No 240
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.40 E-value=8.5e+02 Score=30.60 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCc-cchhHHH
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNK-MTLMHYL 1113 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k-~tLLhyl 1113 (1237)
.|.+++.++....+.+..-|..+.. ...++|+++-.+-|.=|..+.|- ..|. ..+|+.+.+ .+|+|--
T Consensus 418 e~~d~i~~le~e~~~y~de~~kaqa--evdrlLeilkeveneKnDkdkki-------aele--r~~kdqnkkvaNlkHk~ 486 (654)
T KOG4809|consen 418 EFADQIKQLEKEASYYRDECGKAQA--EVDRLLEILKEVENEKNDKDKKI-------AELE--RHMKDQNKKVANLKHKQ 486 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchh-------hhcC--chhhhhhhHHhhHHHHH
Confidence 5666777777777777776666654 56788888888999988887542 2232 556665544 4566653
No 241
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.40 E-value=1.4e+02 Score=33.21 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHc-----ccCCCCC
Q 000884 1147 EEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRN--VDALILYF-----GEDPARC 1219 (1237)
Q Consensus 1147 ~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~--~~~l~~yF-----GEdp~~~ 1219 (1237)
.++++++...++.+..|....=+.-.-..|+..+-++++..+.. -.+.+++...+.. .+-+..|| |+-..+.
T Consensus 93 ~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~~g-~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~ik~~a 171 (256)
T KOG3991|consen 93 AELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVEGG-TSVDELLKIFNDQSSSDYIVMYLRLVTSGFIKSNA 171 (256)
T ss_pred HHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHcCC-ccHHHHHHHHhccchhHHHHHHHHHHHHHHHhhCh
Confidence 35666666666666555443322222355777777777777666 1223333333222 24445555 3433344
Q ss_pred CHHHHH----HHHHHHhhcC
Q 000884 1220 PFEQAQ----IGVIRSADRG 1235 (1237)
Q Consensus 1220 ~~e~~~----s~l~~F~dr~ 1235 (1237)
.|.+-| -|+.+||.+|
T Consensus 172 dfy~pFI~e~~tV~~fC~~e 191 (256)
T KOG3991|consen 172 DFYQPFIDEGMTVKAFCTQE 191 (256)
T ss_pred hhhhccCCCCCcHHHHHHhh
Confidence 444444 4677777765
No 242
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=33.12 E-value=1.9e+02 Score=28.37 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=46.3
Q ss_pred EEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCccccCCeEEEEEecCC
Q 000884 207 VILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCCIQGDVVLECISLND 285 (1237)
Q Consensus 207 I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~v~GDV~i~~~h~~~ 285 (1237)
|.-+.++..+..+.|.||++|+...... .....++.|....... -.| .+.+.|+......-.+.|+||+.+.
T Consensus 7 i~a~~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~w----ne~f~f~~~~~~~~~l~~~V~d~d~ 79 (120)
T cd04048 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDF----VTTFTVDYYFEEVQKLRFEVYDVDS 79 (120)
T ss_pred EEccCCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCc----eEEEEEEEEeEeeeEEEEEEEEecC
Confidence 4555667666667899999999865210 0011122221110000 011 1224444322233468888888764
Q ss_pred ---cccccceEEEEEecccccc
Q 000884 286 ---DLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 286 ---~~~~~~~~Fr~~FnT~FI~ 304 (1237)
..+....|.++.+...=+.
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~ 101 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIV 101 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHh
Confidence 1345567777777665544
No 243
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=33.02 E-value=1.6e+02 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHH
Q 000884 1172 ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQA 1224 (1237)
Q Consensus 1172 ~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~ 1224 (1237)
..|...+.+++.+-.|......-..+..++......+..|+-+..++..-+.+
T Consensus 63 ~ed~l~k~i~Ell~~a~~~~~~~~~l~d~~~~l~~Rh~~~~d~~~a~~~h~~~ 115 (271)
T COG5034 63 VEDGLLKEIRELLLKAIYIQKEKSDLADRAEKLLRRHRKLLDDRIAKRPHEKV 115 (271)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh
Confidence 35677788888888887777666677777777777777765554444443333
No 244
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=33.00 E-value=3.8e+02 Score=36.08 Aligned_cols=233 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcc-CCCCCHHHHHHHHhcCCC-HHHHHHHhcccCCccccChhHHHHHHHhcCccHHHHHHHHHHHHHHHH
Q 000884 961 LPELMRSVLALE-DSAIDADQVENLIKFCPT-KEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFKIQFHT 1038 (1237)
Q Consensus 961 ~~el~~aIl~lD-~~~L~~e~l~~Ll~~~Pt-~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~l~~RL~~l~fk~~f~~ 1038 (1237)
..++-+.|-.++ .+..+.+.++..+..+-. .+|+..|++ ++..+.....- +....|..++.||+.+--| -++-
T Consensus 1105 I~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRn---EK~Rmh~~~dk-VDFSDIEkLE~qLq~~~~k-L~dA 1179 (1439)
T PF12252_consen 1105 ITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRN---EKIRMHSGTDK-VDFSDIEKLEKQLQVIHTK-LYDA 1179 (1439)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHh---HHHhhccCCCc-ccHHHHHHHHHHHHHhhhh-hHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcHHHHHHHHHHHHhcccccccC---CccccccccchhhhhhhhhcccCCccchhHHHH
Q 000884 1039 QVSDLRSSLNVVNS-AAEQVRNSAKLRRIMQTILSLGNALNQGT---ARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLC 1114 (1237)
Q Consensus 1039 ~v~dl~~~l~~v~~-A~~el~~S~~L~~lL~~IL~lGN~LN~gt---~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv 1114 (1237)
-+.++.+.+..+.. -.+.+-+=++--.-+.--|+-+.+|-.-. ....-.=..|+.|.||.+---.-+. +|.+.|.
T Consensus 1180 yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ-~LV~~LI 1258 (1439)
T PF12252_consen 1180 YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQ-NLVKALI 1258 (1439)
T ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHH-HHHHHHH
Q ss_pred HHHhhcCcccccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHH
Q 000884 1115 KVLADKLPELLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTL 1194 (1237)
Q Consensus 1115 ~~l~~~~pell~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L 1194 (1237)
..++ .+|.......++.-..+++.--.-|+++++-|..+.......+.+ .++.+|+-.-....-++
T Consensus 1259 n~iR-------------~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di-~kl~~~lv~kQKAYP~M 1324 (1439)
T PF12252_consen 1259 NTIR-------------VSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDI-VKLNDFLVEKQKAYPAM 1324 (1439)
T ss_pred HHHH-------------HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHhhhchHH
Q ss_pred HHHHHHHHHHHHHHHHHcc
Q 000884 1195 ASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1195 ~~~~~~~~~~~~~l~~yFG 1213 (1237)
-++.-+-+.....|.+...
T Consensus 1325 ~QlQ~ksealI~qLRelC~ 1343 (1439)
T PF12252_consen 1325 VQLQFKSEALIIQLRELCE 1343 (1439)
T ss_pred HHHhhhhHHHHHHHHHHHH
No 245
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=32.94 E-value=5.6e+02 Score=26.53 Aligned_cols=120 Identities=8% Similarity=0.040 Sum_probs=60.1
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEEe
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECIS 282 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~h 282 (1237)
.+.=+.-++++..+..+.+.||++|+-++... .++++-.. . .+ -.|. +.|.|.+.-...--+.|++++
T Consensus 3 ~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~----kTk~~~~~--t-~n-P~WN----E~F~f~v~~~~~~~l~v~V~d 70 (150)
T cd04019 3 RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVL----RTRPSQTR--N-GN-PSWN----EELMFVAAEPFEDHLILSVED 70 (150)
T ss_pred EEEEEEeECCCCCCCCCCCCeEEEEEECCEEe----eeEeccCC--C-CC-Cccc----CcEEEEecCccCCeEEEEEEE
Confidence 34445556777777778899999999864111 11111110 0 01 1221 224454321122346677776
Q ss_pred cCCcccccceEEEEEeccccccCC---------eEEeecccCcccc--cCCCCCCCCcEEEEEEee
Q 000884 283 LNDDLEREEMMFRVVFNTAFIRSN---------ILMLNLDEVDILW--NAKELFPKEFRAEILFSE 337 (1237)
Q Consensus 283 ~~~~~~~~~~~Fr~~FnT~FI~~n---------~l~~~k~eLD~~~--~~k~~fp~dF~vel~F~~ 337 (1237)
.+. ..+...|.++.|.-.-+..+ -+.|.+. .+.. +.+.+.....+|+|.|..
T Consensus 71 ~~~-~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~--~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 71 RVG-PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP--GGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred ecC-CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC--CCcccccccCcccccEEEEEEecC
Confidence 543 23456788887776655421 1222221 1110 112466777888888874
No 246
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=2.7e+02 Score=36.03 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhh
Q 000884 1032 FKIQFHTQVSDLRSSLNVVNSAAEQVRN-SAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDT 1100 (1237)
Q Consensus 1032 fk~~f~~~v~dl~~~l~~v~~A~~el~~-S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dt 1100 (1237)
+...+..++.+++..++.+..-.+.++. +.+|.+.|...+.=+|. +|...|...|+.=-...++...
T Consensus 84 k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t--~~~~~~~~~~~~t~~~t~~~~l 151 (698)
T KOG0978|consen 84 KISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT--YGNGNGSLSGTITVNSTELEEL 151 (698)
T ss_pred HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCcccccCcccccchhhhhhh
Confidence 3445566677777777777777777754 77788888777776666 4444444444433333344333
No 247
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=32.67 E-value=3e+02 Score=27.21 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=45.5
Q ss_pred eEEEeEEeeccCCcCC-CCCcceEEEEEecCCCcccCCCCcEEEeccCCcccce-eeccccceEEEecCCccccCCeEEE
Q 000884 202 LTLDCVILRSIPNFDG-QGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVR-TYKQAECELVKIDINCCIQGDVVLE 279 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~-~y~~~d~~~i~i~~~~~v~GDV~i~ 279 (1237)
|.+.-+.-++++.++. .+.|.||+.|+-++ +.++.|....+.+. .| ++.|.|++... ...+.|.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~kt~~P~W----nE~F~f~v~~~-~~~l~~~ 67 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEKSLCPFF----GEDFYFEIPRT-FRHLSFY 67 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEECCCCCcc----CCeEEEEcCCC-CCEEEEE
Confidence 3444445556666542 35699999998743 12344322111111 12 13355655321 2356667
Q ss_pred EEecCCcccccceEEEEEecccccc
Q 000884 280 CISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+++.+. ..+...|.++-++..-+.
T Consensus 68 v~d~~~-~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 68 IYDRDV-LRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred EEECCC-CCCCceEEEEEEEHHHcc
Confidence 777653 334556777777655554
No 248
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=32.45 E-value=3.7e+02 Score=26.44 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=22.6
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecC
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQD 231 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1237)
|+++=|.-++++..+..+.|.||++|+..+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~ 31 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN 31 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC
Confidence 455556666777777778899999999754
No 249
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.42 E-value=3e+02 Score=31.52 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000884 1185 RFAEAEVRTLASLYSAVGR 1203 (1237)
Q Consensus 1185 ~~a~~~v~~L~~~~~~~~~ 1203 (1237)
..+..++..|+..-.++.+
T Consensus 231 ~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 231 TEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 250
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.37 E-value=5.9e+02 Score=29.43 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=13.7
Q ss_pred cChhHHHHHHHhcCccHHHHHH
Q 000884 1007 LGKCEQFFLELMKVPRVESKLR 1028 (1237)
Q Consensus 1007 L~~~EqF~~~l~~vp~l~~RL~ 1028 (1237)
+...+.|+.+|..+-.++..|.
T Consensus 56 ~~~s~~f~~a~~~v~el~~~l~ 77 (291)
T PF10475_consen 56 SEKSDSFFQAMSSVQELQDELE 77 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777766666655554
No 251
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.36 E-value=3.1e+02 Score=26.56 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1144 FLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILY 1211 (1237)
Q Consensus 1144 ~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~y 1211 (1237)
.+..++..++..-+.+.++++.....+.. ...+..=......++..++.....+++.+..++.-
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~----~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGED----AEELKAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCC----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555555555555555443332211 13344445567777788888888888877777643
No 252
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.20 E-value=2.2e+02 Score=31.35 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 000884 1139 KIQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1139 ki~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
+..+..++.++++++..++.+.++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555544433
No 253
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.19 E-value=1.7e+02 Score=25.56 Aligned_cols=25 Identities=12% Similarity=0.411 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSM 1165 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~ 1165 (1237)
.++.|..+++.|...+..|..++..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888887776643
No 254
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=32.13 E-value=9.3e+02 Score=28.63 Aligned_cols=227 Identities=22% Similarity=0.345 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 000884 557 VQVSSLSVSGHHDASLAPCHKPLLHDHALSVSAEVTHQIPASPAIPDPNLASSCKHEAAGLKSDSFSPTTPPPPPAPRPS 636 (1237)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppppp~p~~~~~~~~~~~~~~~~~~~~~~pp~pppp~~~ 636 (1237)
+.+.+.......+.+..+...++.+......-....+.+-..++.-.......++..+.....+....-+++.+.+-..+
T Consensus 118 g~~~sa~~~p~psas~~p~vps~~srs~pP~p~~~PS~~d~~~P~vpSsp~~~hs~~spP~ppppR~~~ppptP~~~p~s 197 (437)
T KOG4462|consen 118 GRRATAQAPPPPSASGAPAVPSLFSRSMPPEPHIGPSSADAAPPSVPSSPSTPHSGASPPTPPPPRPSIPPPTPASAPSS 197 (437)
T ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCccccCccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCcccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
Q 000884 637 IASSASKVPSPPPPPQLPPHHFSSSCPAHFPHTKESKSHMQDRDKPSSATPLPAPETSSSGTNSSTSLSTAP-------- 708 (1237)
Q Consensus 637 ~~~~~~~~pppp~ppp~pp~~~~~~~p~~pppp~p~~p~~~~~~~~~~~~ppppPppp~~~~ppp~~~~ppp-------- 708 (1237)
..+......+-++.+...-..-..-++++++.-.++.+ ...-...+--....++++..+.+..+..+--.
T Consensus 198 k~~a~~~~~plPPtPs~~L~~~~~~PPpPP~~~~Pp~p--~~~r~~~~~~~~~~pPpp~rpap~vp~~p~~sgn~esp~l 275 (437)
T KOG4462|consen 198 KKSANLPSVPLPPTPSASLPTHVKAPPPPPAQQKPPIP--LDSRNISSDREQFSPPPPARPAPDVPTAPRRSGNSESPDL 275 (437)
T ss_pred ccccccccCCCCCCccccccccccCCCCCccccCCCCc--cccccCCCcccccCCCCcccCCCCCCCCcccCcccccccc
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000884 709 -----------LPAPATAKSTFPPPPPPPPPPTP-----------PLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPT 766 (1237)
Q Consensus 709 -----------~p~~ppp~~~~~Ppppppppp~p-----------p~~~~~~~~~~~~~~~ppppp~pp~~~~~~~~~pp 766 (1237)
++-.+++.....|+.++-.++++ +.+..++.-.+....+.++++.+-..+-.+.....
T Consensus 276 pQr~ns~s~stPplapP~~tsa~Pplp~~~PPPPvrd~p~r~ap~pppPPv~r~~sar~~P~pPp~~~~~ts~~P~~~~r 355 (437)
T KOG4462|consen 276 PQRTNSLSLSTPPLAPPPPTSAAPPLPPKVPPPPVRDPPSRAAPAPPPPPVSRTGSARDAPAPPPPAPNVTSESPKSGNR 355 (437)
T ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCCCCCCccccccccccCCCCCCCcccccccCCCcCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000884 767 PPPPPKPPLKEQSAIRAGPPPPPPPPL 793 (1237)
Q Consensus 767 pppppppp~~~~~~~~~~ppppPpPP~ 793 (1237)
+++++..+ ..+.++|+||.
T Consensus 356 pP~PPs~~--------~A~~PPPPPPs 374 (437)
T KOG4462|consen 356 PPPPPSRS--------PAPAPPPPPPS 374 (437)
T ss_pred CCCCCCcc--------cCCCCCCCCCc
No 255
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=32.12 E-value=2.5e+02 Score=28.15 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCcc-c-cC
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC-I-QG 274 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~-v-~G 274 (1237)
+....|.+.-|.-++++ ..++|.||++||-... ++ +.-+.|....+.+.-+ =++.+.|++... + ..
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~----~k--~~k~kT~v~rktlnPv---fnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVS----EG--QKEAQTALKKLALHTQ---WEEELVFPLPEEESLDG 78 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCC----cC--ccEEEcceecCCCCCc---cccEEEEeCCHHHhCCc
Confidence 45567777777777787 2477999999997421 11 1112332222122111 123466765432 2 23
Q ss_pred CeEEEEEecCCcccccceEEEEEeccc
Q 000884 275 DVVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
.+.|.+++.+. .++...|.++.+..+
T Consensus 79 tL~~~V~d~Dr-fs~~d~IG~v~l~l~ 104 (118)
T cd08677 79 TLTLTLRCCDR-FSRHSTLGELRLKLA 104 (118)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEccc
Confidence 45556666553 445566666666554
No 256
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=32.09 E-value=5.2e+02 Score=25.66 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=58.2
Q ss_pred ceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEE
Q 000884 200 RALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLE 279 (1237)
Q Consensus 200 ~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~ 279 (1237)
+.|.+.-|.=+++|. .+.|.||++|+-++. ....|......--.|. +.|.|+..-.-...+.|.
T Consensus 4 ~~L~V~Vi~A~~L~~---~~~~DPYv~v~l~~~---------~~~kT~v~~~~nP~Wn----E~f~f~~~~~~~~~l~v~ 67 (126)
T cd08400 4 RSLQLNVLEAHKLPV---KHVPHPYCVISLNEV---------KVARTKVREGPNPVWS----EEFVFDDLPPDVNSFTIS 67 (126)
T ss_pred eEEEEEEEEeeCCCC---CCCCCeeEEEEECCE---------eEEEeecCCCCCCccC----CEEEEecCCCCcCEEEEE
Confidence 345666666666765 356999999997541 1222211100001121 235555311111346677
Q ss_pred EEecCCcccccceEEEEEeccccccCCeEEeecccCcccccCCCCCCCCcEEEEEEee
Q 000884 280 CISLNDDLEREEMMFRVVFNTAFIRSNILMLNLDEVDILWNAKELFPKEFRAEILFSE 337 (1237)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~~n~l~~~k~eLD~~~~~k~~fp~dF~vel~F~~ 337 (1237)
+++.+. ..+...|.++.+.-+.+..+...=.+-+|......+.+-.-..++.|.|.+
T Consensus 68 v~d~~~-~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 68 LSNKAK-RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEECCC-CCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 777543 445678888888766555332211222333221111222344566666654
No 257
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.03 E-value=2.7e+02 Score=33.21 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCC
Q 000884 1139 KIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE-DPA 1217 (1237)
Q Consensus 1139 ki~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE-dp~ 1217 (1237)
+-.++.+++++.++++.+++.+..+..-.+....-+ ...-.......+..|+..+.+++..+.++..||++ .|.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-----~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-----PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 345567788888888888888877654332211111 01112233445777788888888888888999999 455
Q ss_pred CCCHHHHHHHHH
Q 000884 1218 RCPFEQAQIGVI 1229 (1237)
Q Consensus 1218 ~~~~e~~~s~l~ 1229 (1237)
-..+..=+..+.
T Consensus 244 v~~l~~~i~~l~ 255 (362)
T TIGR01010 244 VPSLQARIKSLR 255 (362)
T ss_pred hHHHHHHHHHHH
Confidence 444443333333
No 258
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.02 E-value=2.3e+02 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1142 LKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
+..+.+++.++.+.+..+..++.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 259
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=31.93 E-value=49 Score=38.33 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeccCCcc
Q 000884 102 VIHHFLRSTESWLSLGQHNVLMMHCERGGWP 132 (1237)
Q Consensus 102 ~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgr 132 (1237)
.+-.++++|.+||.++++.||+|+++.-.|-
T Consensus 98 ~~~~~L~~i~~fl~~~p~Evvil~~~~~~~~ 128 (290)
T cd08616 98 LVKEILEEINDFLTEHPKEVVILDFNHFYGM 128 (290)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEEccCCC
Confidence 6788999999999999999999999865443
No 260
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.91 E-value=1.6e+02 Score=35.92 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCC-cc-chhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDG-AI-SENFSKI--LREFLRFAEAEVRTLASLYSAVGRNVDALILYF 1212 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~-~~-~d~F~~~--l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yF 1212 (1237)
+++.+..+++.+.+.|.+++..+..-...- .+ ...+..+ =+.|+..-+..+..|++.++.+...|.-+-.+.
T Consensus 247 qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 247 QLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777665554211000 00 0001111 145666666666666666666666665554433
No 261
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=31.67 E-value=1.2e+02 Score=36.21 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=15.9
Q ss_pred CCCcEEEEEeccCCccchhHHHHHH
Q 000884 117 GQHNVLMMHCERGGWPVLAFMLAAL 141 (1237)
Q Consensus 117 d~~NVvvvHCk~Gkgrt~g~~ia~y 141 (1237)
+.+..|+|||..|-.|| +.+ +++
T Consensus 229 ~~~~~Vlvh~~dGwDrt-~q~-~sL 251 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRT-SQL-SSL 251 (353)
T ss_dssp TT--EEEEECTTSSSHH-HHH-HHH
T ss_pred ccCceEEEEcCCCCccc-HHH-HHH
Confidence 56788999999999996 544 444
No 262
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=31.61 E-value=3.8e+02 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000884 1177 SKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1177 ~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFG 1213 (1237)
.+.++.|+ +++..++.+...+++.....|..-||
T Consensus 79 lk~l~~~~---~~~f~a~~edi~rlE~~i~~lgaRwG 112 (231)
T COG5493 79 LKLLQRFQ---EEEFRATKEDIKRLETIITGLGARWG 112 (231)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666 45566677777777777777777777
No 263
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=31.61 E-value=2.5e+02 Score=33.42 Aligned_cols=56 Identities=14% Similarity=0.393 Sum_probs=29.9
Q ss_pred HHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCccchhHHHHHHHhhcCcccccccccccChH
Q 000884 1066 IMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLE 1135 (1237)
Q Consensus 1066 lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le 1135 (1237)
+++-+|.+||-+-- +..+..|--.+. .++++||+-+...+.+. ++..|.+++..++
T Consensus 65 ~ikq~Lri~Np~~m-----------~~gm~dLfLaqp-fG~~sLlQrifs~~L~~--d~~~~~k~i~~le 120 (341)
T PF12825_consen 65 VIKQILRITNPATM-----------MKGMMDLFLAQP-FGGRSLLQRIFSMVLND--DIKEFEKEIDKLE 120 (341)
T ss_pred HHHHHHhcCCHHHH-----------HHHHHHHHccCC-CCcCcHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence 45667777776432 122333332333 45789999888766542 3334444444443
No 264
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=31.49 E-value=3.2e+02 Score=26.35 Aligned_cols=87 Identities=10% Similarity=0.205 Sum_probs=45.1
Q ss_pred EEEeEEeeccCCcCC-CCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCcc-c-cCCeEE
Q 000884 203 TLDCVILRSIPNFDG-QGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCC-I-QGDVVL 278 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~-v-~GDV~i 278 (1237)
.++=|.-++++..+. .+.|.||++|+.++ ..+.|....... -.|.. +.+.|.+... + ..-+.|
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~~~nP~W~n---e~f~f~i~~~~l~~~~l~i 68 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKKSLNPVWNS---EWFRFEVDDEELQDEPLQI 68 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecCCCCCcccC---cEEEEEcChHHcCCCeEEE
Confidence 344455567777764 46799999999854 122222111111 12211 2355554221 2 245778
Q ss_pred EEEecCCcccccceEEEEEeccccc
Q 000884 279 ECISLNDDLEREEMMFRVVFNTAFI 303 (1237)
Q Consensus 279 ~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1237)
+|++.+. .++...|.++.+.-.-+
T Consensus 69 ~V~d~d~-~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 69 RVMDHDT-YSANDAIGKVYIDLNPL 92 (110)
T ss_pred EEEeCCC-CCCCCceEEEEEeHHHh
Confidence 8888653 33445666666655443
No 265
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=31.45 E-value=2.1e+02 Score=28.64 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=26.5
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEe
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYG 229 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~ 229 (1237)
+....|.+.-+.-++++..+..+.|.||++|+-
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l 44 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWL 44 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEE
Confidence 345678888888888888777788999999986
No 266
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=31.42 E-value=2.3e+02 Score=28.29 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCceeEEEeEEeeccCCcCCC-CCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCc-ccc
Q 000884 197 PLDRALTLDCVILRSIPNFDGQ-GGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINC-CIQ 273 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v~ 273 (1237)
+....|.++-|.-++++..+.. +.|.||++||-... + .......|....... -.|. +.|.|++.. .+.
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~----~-~~~~~~kT~v~~~t~nP~wn----E~f~f~i~~~~l~ 82 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD----K-SRQSKRKTSIKRNTTNPVYN----ETLKYSISHSQLE 82 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC----C-ccccceEeeeeeCCCCCccc----ceEEEECCHHHhC
Confidence 3456777777888888876543 67999999997421 0 000011111000000 1221 345665532 232
Q ss_pred C-CeEEEEEecCCcccccceEEEEEecccccc
Q 000884 274 G-DVVLECISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 274 G-DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+ -+.|.|++.+. .++...|.++.|.-+-+.
T Consensus 83 ~~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 83 TRTLQLSVWHYDR-FGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CCEEEEEEEECCC-CCCCcEEEEEEEeCCccc
Confidence 2 37778888653 445667777777766544
No 267
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=31.29 E-value=47 Score=38.33 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEecc
Q 000884 101 EVIHHFLRSTESWLSLGQHNVLMMHCER 128 (1237)
Q Consensus 101 ~~l~~~~~~~~~wL~~d~~NVvvvHCk~ 128 (1237)
..+-.++++|..||.++++.||+|+++.
T Consensus 77 ~~l~~~L~~i~~FL~~~p~EvVil~~~~ 104 (281)
T cd08620 77 QGFDTFLQDVVTFLKANPTEIVVVHITW 104 (281)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 4577889999999999999999999984
No 268
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=31.21 E-value=1e+02 Score=29.93 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=14.6
Q ss_pred HHHHHHcCCCcEEEEEeccCCcc
Q 000884 110 TESWLSLGQHNVLMMHCERGGWP 132 (1237)
Q Consensus 110 ~~~wL~~d~~NVvvvHCk~Gkgr 132 (1237)
+..++..+....||+||..|+.|
T Consensus 57 ~~~~~~~~~~~~iv~~C~~~g~r 79 (113)
T cd01443 57 VYALFSLAGVKLAIFYCGSSQGR 79 (113)
T ss_pred HHHHhhhcCCCEEEEECCCCCcc
Confidence 33334334557899999876556
No 269
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.03 E-value=3.9e+02 Score=34.05 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHH
Q 000884 1048 NVVNSAAEQVRNSAKLRRIMQTILS 1072 (1237)
Q Consensus 1048 ~~v~~A~~el~~S~~L~~lL~~IL~ 1072 (1237)
+.+..-.+.|.+..++...++.++.
T Consensus 212 e~L~~e~~~L~n~e~i~~~~~~~~~ 236 (563)
T TIGR00634 212 EALEAEQQRLSNLEKLRELSQNALA 236 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4455666667777777777777655
No 270
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=30.87 E-value=1.5e+02 Score=27.90 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=36.9
Q ss_pred HHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEEEE
Q 000884 45 GGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVLMM 124 (1237)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVvvv 124 (1237)
.++...|+..+. +..|..++.... |+.. +.| |+-..++..+..+...+..+ +.+..+||
T Consensus 5 ~~l~~~~~~~~~--~~~iiDvR~~~e----------~~~~--hI~----ga~~ip~~~~~~~~~~~~~~---~~~~~vv~ 63 (101)
T cd01528 5 AELAEWLADERE--EPVLIDVREPEE----------LEIA--FLP----GFLHLPMSEIPERSKELDSD---NPDKDIVV 63 (101)
T ss_pred HHHHHHHhcCCC--CCEEEECCCHHH----------HhcC--cCC----CCEecCHHHHHHHHHHhccc---CCCCeEEE
Confidence 456666665433 367888876532 2111 111 11111344444333322221 45678999
Q ss_pred EeccCCccchhHHHHHHHHH
Q 000884 125 HCERGGWPVLAFMLAALLIY 144 (1237)
Q Consensus 125 HCk~Gkgrt~g~~ia~yL~y 144 (1237)
+|..| .| +..++.+|..
T Consensus 64 ~c~~g-~r--s~~~~~~l~~ 80 (101)
T cd01528 64 LCHHG-GR--SMQVAQWLLR 80 (101)
T ss_pred EeCCC-ch--HHHHHHHHHH
Confidence 99765 45 3444444443
No 271
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=30.67 E-value=2.8e+02 Score=27.34 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=19.5
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
.++-+.-++++..+..+.|.||++|+..
T Consensus 3 ~v~v~~A~~L~~~~~~~~~dpyv~v~~~ 30 (123)
T cd08382 3 RLTVLCADGLAKRDLFRLPDPFAVITVD 30 (123)
T ss_pred EEEEEEecCCCccCCCCCCCcEEEEEEC
Confidence 4444444567766666779999999974
No 272
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=30.66 E-value=2.7e+02 Score=29.79 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=8.9
Q ss_pred cccccc--hhhhhhhh
Q 000884 1086 AIGFRL--DSLLKLTD 1099 (1237)
Q Consensus 1086 A~GFkL--~sL~KL~d 1099 (1237)
..||.+ +.+.+|++
T Consensus 74 G~gF~vvA~eir~LA~ 89 (213)
T PF00015_consen 74 GRGFAVVADEIRKLAE 89 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhh
Confidence 457766 45777764
No 273
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.55 E-value=8.4e+02 Score=31.48 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000884 1142 LKFLAEEMQALSKGLEKVVQEL 1163 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el 1163 (1237)
+++...+++.+...++++++++
T Consensus 148 i~~~~~~y~~~~~~~~~vr~~w 169 (611)
T KOG2398|consen 148 IKEAREEYRSLVAKLEKVRKDW 169 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 274
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.46 E-value=1.6e+02 Score=36.32 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcccCC
Q 000884 1150 QALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLA-----SLYSAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1150 ~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~-----~~~~~~~~~~~~l~~yFGEdp 1216 (1237)
.+|.+++.+.++++.++.-|.-......+.+.+-+..+...+.+.. ..+..+..-+.+++.-||-.+
T Consensus 383 ~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 383 AELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESGERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhccccchHHHHHHHHHHHHHHHHhCCCc
Confidence 4455555555555544332221122334666777777777777766 778888888999999999875
No 275
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=30.32 E-value=7.9e+02 Score=27.22 Aligned_cols=24 Identities=0% Similarity=0.032 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1036 FHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1036 f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
.+..++.+-+.|..+.+.|+.+.+
T Consensus 7 ~e~~le~~~k~i~kLiK~c~~~i~ 30 (207)
T cd07635 7 HEAELERTNRFIKELLKDGKNLIA 30 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777788877776
No 276
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.06 E-value=5e+02 Score=28.31 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=28.6
Q ss_pred CccchhHHHHHHHhhcCcccc-cccccccChHHHhhhhHHHHHHHHHH
Q 000884 1105 NKMTLMHYLCKVLADKLPELL-DFSEDLTSLEPASKIQLKFLAEEMQA 1151 (1237)
Q Consensus 1105 ~k~tLLhylv~~l~~~~pell-~f~~dL~~le~Aski~l~~L~~e~~~ 1151 (1237)
.+..+++||.++.+-+..|+. +-.+++.-|+.|-.+ |+.|++|+..
T Consensus 55 k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v-~~~I~~E~~~ 101 (200)
T cd00280 55 KTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMV-LESIEKEFSL 101 (200)
T ss_pred hHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHH-HHHHHHhcCC
Confidence 455678888888766655542 223456778877544 5666666654
No 277
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=30.05 E-value=5.8e+02 Score=33.71 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--------C-CCc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1146 AEEMQALSKGLEKVVQELSMSE--------N-DGA----------ISENFSKILREFLRFAEAEVRTLASLYSAVGRNVD 1206 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~--------~-d~~----------~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~ 1206 (1237)
.+|+++|.+.|+.+++.+-.-+ . .+. ....+....+.|-+-.+.-|..+.++.+.+.+.+.
T Consensus 160 ~~d~~~le~NL~~a~~NM~~~~~l~l~~~~~~N~~LVn~~NKLvYLGrli~av~~SW~~Le~kcl~rI~el~~~L~~elr 239 (839)
T PF06070_consen 160 AEDVQELEENLRAARSNMFWYTPLKLNLDRHENGPLVNAINKLVYLGRLIVAVSTSWEELEEKCLSRINELCKRLVKELR 239 (839)
T ss_pred HHHHHHHHHHHHHHHhccEEEEeeecccccccCccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887653211 1 111 12345667778877777777777777776666655
Q ss_pred HH
Q 000884 1207 AL 1208 (1237)
Q Consensus 1207 ~l 1208 (1237)
.+
T Consensus 240 ~~ 241 (839)
T PF06070_consen 240 RN 241 (839)
T ss_pred hC
Confidence 44
No 278
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=29.52 E-value=2.7e+02 Score=27.95 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCCCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 195 WPPLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+-+....|.+.=+.-++++..+..+.|.||++||-.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Ll 44 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALL 44 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEc
Confidence 344566788887888888888777889999999964
No 279
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.43 E-value=5e+02 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHhccc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAK-----LRRIMQTILSLGNA 1076 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~-----L~~lL~~IL~lGN~ 1076 (1237)
+.+..+++++..|+.+.+.|+.+.++-+ -+.+...+-.+|..
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~ 52 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY 52 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566788899999999999999887433 44444445555543
No 280
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.19 E-value=2e+02 Score=30.92 Aligned_cols=12 Identities=33% Similarity=0.213 Sum_probs=5.7
Q ss_pred cccchhhhhhhh
Q 000884 1088 GFRLDSLLKLTD 1099 (1237)
Q Consensus 1088 GFkL~sL~KL~d 1099 (1237)
-|.=+.|.+|.|
T Consensus 42 ~tvKdvLQsLvD 53 (203)
T KOG3433|consen 42 QTVKDVLQSLVD 53 (203)
T ss_pred hHHHHHHHHHhc
Confidence 333345555543
No 281
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.05 E-value=1.1e+02 Score=35.82 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=14.8
Q ss_pred HHHHHHHHccc--CCCCCCHHHHHHHH
Q 000884 1204 NVDALILYFGE--DPARCPFEQAQIGV 1228 (1237)
Q Consensus 1204 ~~~~l~~yFGE--dp~~~~~e~~~s~l 1228 (1237)
...+++.|+|| ...-.+|+++++.+
T Consensus 314 aieD~i~~L~~~~r~G~i~l~~yLr~V 340 (365)
T KOG2391|consen 314 AIEDAIYSLGKSLRDGVIDLDQYLRHV 340 (365)
T ss_pred HHHHHHHHHHHHHhcCeeeHHHHHHHH
Confidence 34555667777 33446777776554
No 282
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.98 E-value=2.6e+02 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 000884 1145 LAEEMQALSKGLEKVVQELSMSE 1167 (1237)
Q Consensus 1145 L~~e~~~l~k~l~kl~~el~~s~ 1167 (1237)
|.+.++.|.+++++++..+..||
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SE 28 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSE 28 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544443
No 283
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.58 E-value=1.9e+02 Score=35.97 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALIL 1210 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~ 1210 (1237)
+.++.-+..+..++.+|+...++++..++++++
T Consensus 117 Eelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 117 EELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445666677777777888888888877777765
No 284
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=28.46 E-value=2.8e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.5
Q ss_pred CCceeEEEeEEeeccCCcC-CCCCcceEEEEEec
Q 000884 198 LDRALTLDCVILRSIPNFD-GQGGCRPIFRIYGQ 230 (1237)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~-~~~gcrP~~~Iy~~ 230 (1237)
....|.+.-|.-++++..+ ..+.|.||++|+-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~ 45 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEe
Confidence 4456777777777888877 56789999999863
No 285
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=28.40 E-value=4.6e+02 Score=25.63 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=19.8
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+++.-+.-++++..+..+.+.||++|+..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~ 31 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDT 31 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEEC
Confidence 34444555567766666678899999864
No 286
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=28.38 E-value=2.5e+02 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=15.9
Q ss_pred EEeeccCCcCCCCCcceEEEEEec
Q 000884 207 VILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 207 I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
|.-+.++.. ..+.|.||++|+..
T Consensus 6 i~A~~L~~~-~~g~~dPyv~v~~~ 28 (137)
T cd08675 6 LECRDLALK-SNGTCDPFARVTLN 28 (137)
T ss_pred EEccCCCcc-cCCCCCcEEEEEEe
Confidence 334455554 45779999999976
No 287
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=28.32 E-value=2.7e+02 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCceeEEEeEEeeccCCcCCC-CCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQ-GGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1237)
+....|.+.-+..++++..+.. +.|.||++||-.
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~ll 46 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLL 46 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEE
Confidence 3456788888888888887764 889999999964
No 288
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.28 E-value=8.2e+02 Score=26.80 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=4.5
Q ss_pred cChhHHHHHHH
Q 000884 1007 LGKCEQFFLEL 1017 (1237)
Q Consensus 1007 L~~~EqF~~~l 1017 (1237)
+.+.|.||..+
T Consensus 19 ~~e~D~~F~~~ 29 (236)
T PF09325_consen 19 MKEPDEWFEEI 29 (236)
T ss_pred CCCCCHHHHHH
Confidence 33344444433
No 289
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.07 E-value=4.3e+02 Score=30.31 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1181 REFLRFAEAEVRTLASLYSAVGRN 1204 (1237)
Q Consensus 1181 ~~Fl~~a~~~v~~L~~~~~~~~~~ 1204 (1237)
+.-++..+.+|..+++...+-.+.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333
No 290
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=28.03 E-value=8.4e+02 Score=26.82 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=29.9
Q ss_pred hcCCCHHHHHHHhcccCCccccChhHHHHHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000884 986 KFCPTKEEMDLLKGYTGDKEKLGKCEQFFLELMKVPRVESKLRVFSFK-IQFHTQVSDLRSSLN-VVNSAAEQVR 1058 (1237)
Q Consensus 986 ~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l~~vp~l~~RL~~l~fk-~~f~~~v~dl~~~l~-~v~~A~~el~ 1058 (1237)
++.||.-++..++. .|.-+.+.. +-++.|.++|... ......+.+++..++ .+..|+..+.
T Consensus 3 ~v~PTr~~L~~lk~------rl~~a~rg~------~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~ 65 (209)
T TIGR00309 3 KVNPTRMELLKLKD------KLKMAKRGY------SLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLI 65 (209)
T ss_pred CCCCCHHHHHHHHH------HHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888777766 222333332 2344455544331 122333444455555 4556665553
No 291
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.00 E-value=1.3e+03 Score=31.18 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000884 1142 LKFLAEEMQALSKGLEKVVQELS 1164 (1237)
Q Consensus 1142 l~~L~~e~~~l~k~l~kl~~el~ 1164 (1237)
+..+.+.++++.+.|++.+..++
T Consensus 359 ~~~~ke~~~~~s~~~e~~e~~~e 381 (1174)
T KOG0933|consen 359 YEKLKEAFQEDSKLLEKAEELVE 381 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777666654
No 292
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=27.98 E-value=7.9e+02 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=11.7
Q ss_pred cccccccchhhhhhhh
Q 000884 1084 GAAIGFRLDSLLKLTD 1099 (1237)
Q Consensus 1084 g~A~GFkL~sL~KL~d 1099 (1237)
....|-+++||.+|.+
T Consensus 81 dav~GP~INSL~~lQq 96 (385)
T PF15642_consen 81 DAVLGPKINSLTELQQ 96 (385)
T ss_pred hhhcCcccchHHHHHH
Confidence 3466888888888764
No 293
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=27.97 E-value=5.9e+02 Score=25.03 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred EeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCcc--ccCCeEEEEEecCC
Q 000884 208 ILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCC--IQGDVVLECISLND 285 (1237)
Q Consensus 208 ~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~--v~GDV~i~~~h~~~ 285 (1237)
..+.++. ..+.|.||++|+.++.. ..++++-.+. + -.|. +.+.|.+.-. -...+.|+|++.+.
T Consensus 4 ~a~~L~~--~~g~~Dpyv~v~~~~~~----~kT~v~~~~~----n-P~Wn----e~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 4 SLKNLPG--LKGKGDRIAKVTFRGVK----KKTRVLENEL----N-PVWN----ETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred EeeCCcc--cCCCCCCEEEEEECCEe----eecceeCCCc----C-Cccc----ceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 3445555 24679999999975411 1122221110 0 0121 2355544221 23456777887653
Q ss_pred cccccceEEEEEeccccccCCeEEeeccc-CcccccCCCCCCCCcEEEEEEeecCcc
Q 000884 286 DLEREEMMFRVVFNTAFIRSNILMLNLDE-VDILWNAKELFPKEFRAEILFSEMDAA 341 (1237)
Q Consensus 286 ~~~~~~~~Fr~~FnT~FI~~n~l~~~k~e-LD~~~~~k~~fp~dF~vel~F~~~~~~ 341 (1237)
..+...|.++.+.-.=+..+........ +|. ..+.......+++.|.+.+..
T Consensus 69 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 69 -VGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS---NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred -CCCCceEEEEEEEhhHcccCCceEEEEeCcCC---CCCcccEEEEEEEEEeCCCCc
Confidence 3345678888877654443211111111 111 112234566777777776553
No 294
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=27.92 E-value=5.6e+02 Score=28.66 Aligned_cols=25 Identities=8% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+++..+.++...++.....++.|..
T Consensus 4 ~ld~~f~~le~k~D~t~~~~~~i~~ 28 (223)
T cd07613 4 KLDDDFKEMERKVDVTSRAVMEIMT 28 (223)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777776666543
No 295
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=27.79 E-value=6.7e+02 Score=30.28 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=14.4
Q ss_pred HHHHHcccCCCCCCHH--HHHHHHHHHhhc
Q 000884 1207 ALILYFGEDPARCPFE--QAQIGVIRSADR 1234 (1237)
Q Consensus 1207 ~l~~yFGEdp~~~~~e--~~~s~l~~F~dr 1234 (1237)
++..++-.+.....-- +.++++..|++|
T Consensus 198 ~i~~~~~~ka~~~~q~~v~~v~~~~~~~~~ 227 (386)
T COG3853 198 EIIPELKTKAESGNQMDVQQVNELTLFINR 227 (386)
T ss_pred HhhHHHHhcCCccchhHHHHHHHHHHHHHH
Confidence 4444444444433311 447777777754
No 296
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=27.75 E-value=1.6e+02 Score=36.90 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcC
Q 000884 1198 YSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRG 1235 (1237)
Q Consensus 1198 ~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr~ 1235 (1237)
+..+-+.|..+..|.+.. ...+++-.|.-..++|
T Consensus 200 l~~aie~Y~~f~~~~~~~----~~~~~Lp~L~~v~~~g 233 (507)
T PF05600_consen 200 LQEAIEYYQAFVEFVHDE----SESEVLPLLRFVQEHG 233 (507)
T ss_pred HHHHHHHHHHHHHHHHcC----ccchhhHHHHHHHhCC
Confidence 566667788888887732 3445555554444443
No 297
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.74 E-value=3.6e+02 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=7.3
Q ss_pred HHHHHhcCCCHHHHHHH
Q 000884 981 VENLIKFCPTKEEMDLL 997 (1237)
Q Consensus 981 l~~Ll~~~Pt~eE~~~L 997 (1237)
|+.|...-+...|.+.|
T Consensus 198 l~ELe~~~l~~~E~e~L 214 (563)
T TIGR00634 198 LEELEEADLQPGEDEAL 214 (563)
T ss_pred HHHHHhCCcCCCcHHHH
Confidence 34444444444443333
No 298
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=27.70 E-value=88 Score=44.13 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000884 765 PTPPPPPKPPLKEQSAIRAGPPPPPPPPLYSGSSASSTVSSPTIPLAPPPPSLSSNSSPVPPPPPIAKV 833 (1237)
Q Consensus 765 pppppppppp~~~~~~~~~~ppppPpPP~~~~~~~~~~~p~pppPpppppp~~~~~~~~ppPPpPp~~~ 833 (1237)
+++|++.+++.|+.+.-+++++.||.+| ++++++.||+|+.....+.||.+++.+.|
T Consensus 1669 ~~pp~~~~~~~P~~~~d~~~~~~PP~~p------------~~~~~v~Pp~p~~~~~~~tPP~~~g~~~P 1725 (2039)
T PRK15319 1669 SDDDDSGGDDTPSDGGDDGGNVTPPDDG------------GDGGNVTPPDDGGDGGDVTPPDHGGDVAP 1725 (2039)
T ss_pred CCCCccccccCCCCccccccCCCCCccc------------cccccCCCCCccccccCCCCCCcCCCCcc
No 299
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.65 E-value=1.8e+02 Score=33.67 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000884 1040 VSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1040 v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+.+|...+......|..+|+
T Consensus 69 v~el~~~l~~a~~~~~~~R~ 88 (291)
T PF10475_consen 69 VQELQDELEEALVICKNLRR 88 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 300
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.36 E-value=6.5e+02 Score=28.64 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=4.4
Q ss_pred HHHHhccccc
Q 000884 1069 TILSLGNALN 1078 (1237)
Q Consensus 1069 ~IL~lGN~LN 1078 (1237)
+.+..|+-|-
T Consensus 65 ~M~~~g~elg 74 (248)
T cd07619 65 CMVEGAAVLG 74 (248)
T ss_pred HHHHHHHhcC
Confidence 3444444443
No 301
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=4.9e+02 Score=31.85 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=22.1
Q ss_pred hHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1010 CEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1010 ~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el 1057 (1237)
+++..-++-++|+--.|...-.=..+|...+...+..|.++..--++|
T Consensus 368 ~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreL 415 (521)
T KOG1937|consen 368 AEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETREL 415 (521)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666677777643343322223344444444444444444434444
No 302
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=27.34 E-value=4.3e+02 Score=29.51 Aligned_cols=24 Identities=4% Similarity=0.166 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1036 FHTQVSDLRSSLNVVNSAAEQVRN 1059 (1237)
Q Consensus 1036 f~~~v~dl~~~l~~v~~A~~el~~ 1059 (1237)
+++.+.++...++....+++.|..
T Consensus 5 ld~df~~le~~~d~~~~~~~~l~~ 28 (223)
T cd07592 5 LDDEFLEMERKTDATSKLVEDLIP 28 (223)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666544
No 303
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.32 E-value=1.8e+03 Score=31.10 Aligned_cols=236 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred hccCCCCCHHHHHHHHhcCC-CHHHHHHHhcccCCccccChhHHHHHHHh--------cCccHHHHHHHHHHHHHHHHHH
Q 000884 970 ALEDSAIDADQVENLIKFCP-TKEEMDLLKGYTGDKEKLGKCEQFFLELM--------KVPRVESKLRVFSFKIQFHTQV 1040 (1237)
Q Consensus 970 ~lD~~~L~~e~l~~Ll~~~P-t~eE~~~L~~~~~~~~~L~~~EqF~~~l~--------~vp~l~~RL~~l~fk~~f~~~v 1040 (1237)
+|.....|.+.|..|.+-+- ..++++.+.. ....+..-+.|+.... ..|.++.++. .+..++
T Consensus 762 eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~---~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~ 832 (1201)
T PF12128_consen 762 ELAGKGVDPERIQQLKQEIEQLEKELKRIEE---RRAEVIEYEDWLQEEWDKVDELREEKPELEEQLR------DLEQEL 832 (1201)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCccchhHHHHHHHh
Q 000884 1041 SDLRSSLNVVNSAAEQVRN--SAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1118 (1237)
Q Consensus 1041 ~dl~~~l~~v~~A~~el~~--S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~ 1118 (1237)
.+++..++......+..+. ..+++.+-..+-.+-.+++. --+.+.++.++.-......+-+.+-..+.
T Consensus 833 ~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~----------l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 902 (1201)
T PF12128_consen 833 QELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRR----------LRDLLEKLAELSEPPNAEDAEGSVDERLR 902 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhcCCCCCchhhhhhHHHHHH
Q ss_pred hcCcccccccccccChHHHhhhhHHHHHHHH-----HHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHH
Q 000884 1119 DKLPELLDFSEDLTSLEPASKIQLKFLAEEM-----QALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRT 1193 (1237)
Q Consensus 1119 ~~~pell~f~~dL~~le~Aski~l~~L~~e~-----~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~ 1193 (1237)
. +.++...+..+...-+-.+..+...+ ..+...++....++......+-..+.+...+..+-...+..+..
T Consensus 903 ~----~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~ 978 (1201)
T PF12128_consen 903 D----LEDLLQRRKRLREELKKAVERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVLIPQ 978 (1201)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhhhHH
Q ss_pred HHH-HHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1194 LAS-LYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1194 L~~-~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
... ...........+..|||. +.+|=+.+..|=.|
T Consensus 979 ~~~~l~e~~~~~~~~i~~f~~~------l~~~~r~I~~~s~~ 1014 (1201)
T PF12128_consen 979 QQQALIEQGRNIGNDISNFYGV------LEDFDRRIKSQSRR 1014 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHH
No 304
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.27 E-value=9.3e+02 Score=27.08 Aligned_cols=50 Identities=14% Similarity=-0.059 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 000884 1180 LREFLRFAEAEVRTLASLYSAVGRNV-DALILYFGEDPARCPFEQAQIGVIRSADR 1234 (1237)
Q Consensus 1180 l~~Fl~~a~~~v~~L~~~~~~~~~~~-~~l~~yFGEdp~~~~~e~~~s~l~~F~dr 1234 (1237)
...-+++|+.....+...|+++-.+. .++..|+.+ ...++-+.|.+|+.+
T Consensus 162 A~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~-----~~~dl~~~l~ey~~~ 212 (230)
T cd07625 162 AIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDW-----TEEDLQSAIREYTLR 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 33446668888888888888877665 667777766 345555666666543
No 305
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.07 E-value=2.7e+02 Score=31.38 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
..|..=+..++.+...|+..+..+.+...++
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555554444444444
No 306
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=26.99 E-value=4.6e+02 Score=25.25 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=45.7
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECI 281 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~ 281 (1237)
|.+.-+.=++++..+..+.|.||++|+..+.. ..++++..+. + -.|. ..+.|... .+..-+.|+++
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~----~~T~~~~~t~----n-P~W~----e~f~~~~~-~~~~~l~~~v~ 68 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNAR----LQTHTIYKTL----N-PEWN----KIFTFPIK-DIHDVLEVTVY 68 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe----eecceecCCc----C-CccC----cEEEEEec-CcCCEEEEEEE
Confidence 34444444567776666789999999975411 1112222111 0 0111 12444432 12345666777
Q ss_pred ecCCcccccceEEEEEecccccc
Q 000884 282 SLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
+.+. ......|.++.|+..-+.
T Consensus 69 d~~~-~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 69 DEDK-DKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred ECCC-CCCCceeeEEEEEHHHCC
Confidence 7653 234567888877765554
No 307
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=26.94 E-value=3.1e+02 Score=27.24 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.0
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
+....|.++-|..++++..+..+.|.+|++++-.
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll 46 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL 46 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc
Confidence 4567888888899999988877888999998864
No 308
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.83 E-value=2.2e+02 Score=34.09 Aligned_cols=8 Identities=0% Similarity=-0.201 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000884 1050 VNSAAEQV 1057 (1237)
Q Consensus 1050 v~~A~~el 1057 (1237)
+......+
T Consensus 144 l~~~~~~~ 151 (359)
T COG1463 144 LLGDLLLL 151 (359)
T ss_pred HHHHHHHH
Confidence 33333333
No 309
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=26.77 E-value=2.5e+02 Score=32.64 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=62.6
Q ss_pred eeCcEEEeeCCCCCCCcch---hhhhcCHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCC
Q 000884 19 ISERVYVFNCCFTTDAWEE---EDYKKYIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGC 95 (1237)
Q Consensus 19 IT~RIiam~~~fPa~~~~e---~~YRn~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~ 95 (1237)
+-.+|++| |.+.+..+. +.|=.+ .++-.+|... +-.|+..+.. |...|-+| .|+
T Consensus 92 ~kkEIV~l--g~~ddv~p~~~vG~yl~p-~~wn~~l~D~----~~vviDtRN~------------YE~~iG~F----~gA 148 (308)
T COG1054 92 LKKEIVAL--GVEDDVDPLENVGTYLSP-KDWNELLSDP----DVVVIDTRND------------YEVAIGHF----EGA 148 (308)
T ss_pred ehhhheec--CCCCCcCccccccCccCH-HHHHHHhcCC----CeEEEEcCcc------------eeEeeeee----cCc
Confidence 45689999 677533222 455555 3444444322 4666665443 22223333 233
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884 96 PLLTMEVIHHFLRSTESWLSLGQHNVLMMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 96 P~p~l~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
=.|..+...+|-..++++++...+.-||+-|.+|- | .=-.++||+..|
T Consensus 149 v~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-R--CEKas~~m~~~G 196 (308)
T COG1054 149 VEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-R--CEKASAWMKENG 196 (308)
T ss_pred cCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-e--ehhhHHHHHHhc
Confidence 34578888899999999999877778999998664 6 445667776554
No 310
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.70 E-value=1e+03 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000884 1032 FKIQFHTQVSDLRSSLNVVNSA 1053 (1237)
Q Consensus 1032 fk~~f~~~v~dl~~~l~~v~~A 1053 (1237)
+...+...+..|..+++.+.+-
T Consensus 75 ~eek~e~~l~~Lq~ql~~l~ak 96 (258)
T PF15397_consen 75 WEEKEESKLSKLQQQLEQLDAK 96 (258)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555566666666555543
No 311
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.67 E-value=1.7e+03 Score=30.18 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 000884 1146 AEEMQALSKGLEKVVQELSMSE 1167 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~ 1167 (1237)
..++...++.+...+.++...+
T Consensus 338 q~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 338 QKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhcC
Confidence 3445555555555555555443
No 312
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.56 E-value=1.3e+03 Score=28.54 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1033 KIQFHTQVSDLRSSLNVVNS 1052 (1237)
Q Consensus 1033 k~~f~~~v~dl~~~l~~v~~ 1052 (1237)
+..|...+.+|...++.+..
T Consensus 259 k~~f~~~~~~i~~~i~~lk~ 278 (622)
T COG5185 259 KLGFEKFVHIINTDIANLKT 278 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 313
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=26.55 E-value=4.2e+02 Score=27.76 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred CceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecC-C-ccccC-
Q 000884 199 DRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDI-N-CCIQG- 274 (1237)
Q Consensus 199 ~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~-~-~~v~G- 274 (1237)
...|.++-+.-++++..+..+.|.||++|+-... ......+.|....... -.|. +.|.|.. . -.+..
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-----~~~~~~~kT~vi~~t~nP~Wn----E~f~f~~~~~~~l~~~ 96 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-----KSKKSKQKTPVVKKSVNPVWN----HTFVYDGVSPEDLSQA 96 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-----CCCCcceeCCccCCCCCCCCC----CEEEEecCCHHHhCCC
Confidence 3567777777888888877788999999975321 1111233332211111 1121 2355542 1 12322
Q ss_pred CeEEEEEecCCcccccceEEEEEecccccc
Q 000884 275 DVVLECISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
.+.|+|++.+. ..+...|.++.|+-+=+.
T Consensus 97 ~L~i~V~d~d~-~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 97 CLELTVWDHDK-LSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEeCCccc
Confidence 36778887654 344677888887765443
No 314
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.40 E-value=4.9e+02 Score=25.14 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1175 NFSKILREFLRFAEAEVRTLASLYSAVGRNV 1205 (1237)
Q Consensus 1175 ~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~ 1205 (1237)
.....|..-.+.+....+.+...+++++...
T Consensus 43 ~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 43 ELREKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555555555555554443
No 315
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.30 E-value=1.9e+02 Score=32.73 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.9
Q ss_pred HHHhcccccc
Q 000884 1070 ILSLGNALNQ 1079 (1237)
Q Consensus 1070 IL~lGN~LN~ 1079 (1237)
.+.-|..|..
T Consensus 87 m~~~~~~l~~ 96 (242)
T cd07600 87 ALASSLELKS 96 (242)
T ss_pred HHHHHHHhCc
Confidence 4445555544
No 316
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=26.22 E-value=4.8e+02 Score=26.94 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=44.2
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecCCccccCCeEEEEE
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDINCCIQGDVVLECI 281 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~~~~v~GDV~i~~~ 281 (1237)
|+++=|.=++++..+. +.|.||++|+-+... ..++++..+. + -.|. +.+.|.+.-. ..-+.|+||
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~----~kT~vvk~t~----n-P~Wn----E~f~f~i~~~-~~~l~~~V~ 68 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK----VKTRVIKKNL----N-PVWN----EELTLSVPNP-MAPLKLEVF 68 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECCEE----EEeeeEcCCC----C-Ceec----ccEEEEecCC-CCEEEEEEE
Confidence 3444444445666565 779999999875411 1112222211 0 1221 1244443222 456788899
Q ss_pred ecCCcccccceEEEEEeccc
Q 000884 282 SLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
+.+. ......|.++.|...
T Consensus 69 D~d~-~~~dd~iG~a~i~l~ 87 (145)
T cd04038 69 DKDT-FSKDDSMGEAEIDLE 87 (145)
T ss_pred ECCC-CCCCCEEEEEEEEHH
Confidence 8764 344567877777644
No 317
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.22 E-value=1.9e+02 Score=30.19 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDGAI-SENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILY 1211 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~-~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~y 1211 (1237)
.+.++.+++..|.+.++.++...+...++-.. .+...+...--+++...+|.+|+..++.+.+..+.|..|
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~ 144 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGV 144 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC
No 318
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=26.06 E-value=1.1e+02 Score=30.09 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=18.6
Q ss_pred cCCCcEEEEEeccCCccchhHHHHHHHHHHc
Q 000884 116 LGQHNVLMMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 116 ~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
.+.+..||++|..|+.+ +..++.+|.+.|
T Consensus 76 ~~~~~~vv~~c~~g~~~--a~~~~~~l~~~G 104 (122)
T cd01448 76 ISNDDTVVVYDDGGGFF--AARAWWTLRYFG 104 (122)
T ss_pred CCCCCEEEEECCCCCcc--HHHHHHHHHHcC
Confidence 35677899999876333 445555555554
No 319
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=25.94 E-value=3.4e+02 Score=29.48 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCccc--hhHHHHHHHHHHc
Q 000884 104 HHFLRSTESWLSLGQHNVLMMHCERGGWPV--LAFMLAALLIYRK 146 (1237)
Q Consensus 104 ~~~~~~~~~wL~~d~~NVvvvHCk~Gkgrt--~g~~ia~yL~y~~ 146 (1237)
.+.++.+..++....++- ++-|-.|+-|. .|+++||+|.-.+
T Consensus 72 ~~~~~~v~~~i~~~~~~~-v~vnlsgG~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR-VIINLSGGMRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc-EEEEcCCCchHHHHHHHHHHHhcccc
Confidence 355666666666644433 44477777784 3667777777543
No 320
>smart00721 BAR BAR domain.
Probab=25.87 E-value=2.4e+02 Score=30.99 Aligned_cols=18 Identities=0% Similarity=0.041 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000884 1041 SDLRSSLNVVNSAAEQVR 1058 (1237)
Q Consensus 1041 ~dl~~~l~~v~~A~~el~ 1058 (1237)
..++..+..+.+.|+...
T Consensus 37 ~~~~~~~~kl~k~~~~y~ 54 (239)
T smart00721 37 DTTEAEIEKLQKDTKLYL 54 (239)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 334444444444444443
No 321
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=25.72 E-value=90 Score=30.03 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=38.8
Q ss_pred CHHHHHHHHhhhCCCCcEEEEEcCCCcchhhhhccccccCceEEeCCCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcEE
Q 000884 43 YIGGIIGQLREHSPDSQFLVFNFREEETKSLMANVLSEFDITIMDYPRQYEGCPLLTMEVIHHFLRSTESWLSLGQHNVL 122 (1237)
Q Consensus 43 ~i~~V~~~L~~~h~~~~y~V~Nl~~~~~~s~~~~~~s~~~~~V~~yP~~d~~~P~p~l~~l~~~~~~~~~wL~~d~~NVv 122 (1237)
..+++...+++ +. ++.|...++... |.. .+.| |+-..++..+... ..||..+.+.-+
T Consensus 13 ~~~~l~~~~~~--~~-~~~liDvR~~~e----------~~~--ghIp----gainip~~~l~~~----~~~l~~~~~~~i 69 (109)
T cd01533 13 SADELAALQAR--GA-PLVVLDGRRFDE----------YRK--MTIP----GSVSCPGAELVLR----VGELAPDPRTPI 69 (109)
T ss_pred CHHHHHHHHhc--CC-CcEEEeCCCHHH----------Hhc--CcCC----CceeCCHHHHHHH----HHhcCCCCCCeE
Confidence 45566666653 22 378888887532 111 1111 2111244433322 234444556779
Q ss_pred EEEeccCCccchhHHHHHHHHHHc
Q 000884 123 MMHCERGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 123 vvHCk~Gkgrt~g~~ia~yL~y~~ 146 (1237)
||||..|. | +.+++.+|...|
T Consensus 70 vv~C~~G~-r--s~~a~~~L~~~G 90 (109)
T cd01533 70 VVNCAGRT-R--SIIGAQSLINAG 90 (109)
T ss_pred EEECCCCc-h--HHHHHHHHHHCC
Confidence 99997665 5 344455554443
No 322
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=25.70 E-value=1.2e+02 Score=35.10 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=45.3
Q ss_pred hhCCCCcEEEEEcCCCcchhhhhccc--cccCceEEeCCC-CCCCCCcccHHHHHHHHHHHHHHHHc-------CCCcEE
Q 000884 53 EHSPDSQFLVFNFREEETKSLMANVL--SEFDITIMDYPR-QYEGCPLLTMEVIHHFLRSTESWLSL-------GQHNVL 122 (1237)
Q Consensus 53 ~~h~~~~y~V~Nl~~~~~~s~~~~~~--s~~~~~V~~yP~-~d~~~P~p~l~~l~~~~~~~~~wL~~-------d~~NVv 122 (1237)
--|++. |...+...+.+ .+.... +-+..-+++|.- ..|..| ..+.+ |..+..||.+ |++||+
T Consensus 84 y~HGGg-~~~g~~~~~~~--~~~~~~~~~g~~vv~vdYrlaPe~~~p----~~~~d-~~~a~~~l~~~~~~~g~dp~~i~ 155 (312)
T COG0657 84 YLHGGG-WVLGSLRTHDA--LVARLAAAAGAVVVSVDYRLAPEHPFP----AALED-AYAAYRWLRANAAELGIDPSRIA 155 (312)
T ss_pred EEeCCe-eeecChhhhHH--HHHHHHHHcCCEEEecCCCCCCCCCCC----chHHH-HHHHHHHHHhhhHhhCCCccceE
Confidence 357775 66666655522 111111 223344667754 234344 22222 6677778875 489999
Q ss_pred EEEeccCCccchhHHHHHHHH
Q 000884 123 MMHCERGGWPVLAFMLAALLI 143 (1237)
Q Consensus 123 vvHCk~Gkgrt~g~~ia~yL~ 143 (1237)
|+=|.||+. ++.+++..+.
T Consensus 156 v~GdSAGG~--La~~~a~~~~ 174 (312)
T COG0657 156 VAGDSAGGH--LALALALAAR 174 (312)
T ss_pred EEecCcccH--HHHHHHHHHH
Confidence 999999874 3555554444
No 323
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=25.68 E-value=7.2e+02 Score=34.23 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000884 1180 LREFLRFAEAEVRTLASLYSAVGRNVDALILYFGED 1215 (1237)
Q Consensus 1180 l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEd 1215 (1237)
+..+++....+...+ .+..-+...+++..++-|.
T Consensus 679 ~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lsee 712 (1317)
T KOG0612|consen 679 LQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEE 712 (1317)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhccc
Confidence 444555555555555 1222245566666666654
No 324
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.64 E-value=3.4e+02 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQELSM 1165 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~el~~ 1165 (1237)
-++..+..++..|+..++.+++++..
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~ 91 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELAS 91 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666555543
No 325
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=25.38 E-value=1.4e+02 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 000884 1145 LAEEMQALSKGLEKVVQELSM 1165 (1237)
Q Consensus 1145 L~~e~~~l~k~l~kl~~el~~ 1165 (1237)
+..++..|.+.+.+++.++..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655543
No 326
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=25.35 E-value=8.3e+02 Score=31.72 Aligned_cols=25 Identities=36% Similarity=0.272 Sum_probs=12.6
Q ss_pred cChHHHhhhhHHHHHHHHHHHHHHH
Q 000884 1132 TSLEPASKIQLKFLAEEMQALSKGL 1156 (1237)
Q Consensus 1132 ~~le~Aski~l~~L~~e~~~l~k~l 1156 (1237)
..++....-+++.+..+|.+-.+..
T Consensus 174 s~~e~e~~~~~~~~~~~m~e~~~~~ 198 (640)
T KOG3565|consen 174 SRLELEKARKLALLREEMLEGSKQD 198 (640)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344333344555566666655544
No 327
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=25.26 E-value=65 Score=37.08 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEecc
Q 000884 101 EVIHHFLRSTESWLSLGQHNVLMMHCER 128 (1237)
Q Consensus 101 ~~l~~~~~~~~~wL~~d~~NVvvvHCk~ 128 (1237)
..+-.++++|.+||.++ +.||+|.|+.
T Consensus 80 ~~l~~vL~~v~~Fl~~~-~EvVil~~~~ 106 (276)
T cd08622 80 VPLLTVLNDVRNFVQNT-GEIVVLDFHR 106 (276)
T ss_pred ccHHHHHHHHHHHHHHC-CCEEEEEEEc
Confidence 56788999999999999 9999999974
No 328
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=25.24 E-value=2.2e+02 Score=29.71 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHH-HHHHhcCCCHHHHHHHhcccCCc--c-------ccChhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 978 ADQV-ENLIKFCPTKEEMDLLKGYTGDK--E-------KLGKCEQFFLELMKVPRVESKLRVFSFKIQFHTQVSDLRSSL 1047 (1237)
Q Consensus 978 ~e~l-~~Ll~~~Pt~eE~~~L~~~~~~~--~-------~L~~~EqF~~~l~~vp~l~~RL~~l~fk~~f~~~v~dl~~~l 1047 (1237)
.+.| ..|..+.|+-+||+.+....... + .|.+++..+....++.+ .. +.-+..|...+.++...|
T Consensus 36 l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r----~n-~~kk~~y~~Ki~~le~~l 110 (147)
T PF05659_consen 36 LKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR----WN-LYKKPRYARKIEELEESL 110 (147)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH----HH-HHhhHhHHHHHHHHHHHH
Confidence 3444 45667889999999888743322 1 12222222222223222 11 123567778888888877
Q ss_pred HHHHHHHHHHHhcHHHHH
Q 000884 1048 NVVNSAAEQVRNSAKLRR 1065 (1237)
Q Consensus 1048 ~~v~~A~~el~~S~~L~~ 1065 (1237)
..+...--++....-++.
T Consensus 111 ~~f~~v~~q~~~~~D~~~ 128 (147)
T PF05659_consen 111 RRFIQVDLQLHQLRDIKE 128 (147)
T ss_pred HHHhcchhHHHHHHHHHH
Confidence 666555444433333333
No 329
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=25.05 E-value=1.1e+03 Score=30.85 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~e 1162 (1237)
-.++.+.+.++++.+.+.+-+.+
T Consensus 553 ~~l~~l~~~~~elyk~~~k~r~~ 575 (732)
T KOG4250|consen 553 AQLESLLERARELYKQLKKRRAE 575 (732)
T ss_pred HHHHHHHHHHHHHHHHHHhchhh
Confidence 45666777777777777766655
No 330
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=25.03 E-value=62 Score=37.31 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEeccCC
Q 000884 101 EVIHHFLRSTESWLSLGQHNVLMMHCERGG 130 (1237)
Q Consensus 101 ~~l~~~~~~~~~wL~~d~~NVvvvHCk~Gk 130 (1237)
..+.+++++|.+||.++++.||+|+++.-.
T Consensus 92 ~~~~~~l~~i~~fl~~~p~Evvil~~~~~~ 121 (288)
T cd08587 92 EPVDEVLEDVNDFLDEHPKEVVILDFNHFY 121 (288)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEEEEccc
Confidence 456788999999999999999999998644
No 331
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.02 E-value=2.4e+02 Score=30.29 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000884 1145 LAEEMQALSKGLEKV 1159 (1237)
Q Consensus 1145 L~~e~~~l~k~l~kl 1159 (1237)
+.+.++++...+..+
T Consensus 100 l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 100 LQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 332
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.96 E-value=6.6e+02 Score=28.21 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1143 KFLAEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~kl~~e 1162 (1237)
..+++++.+++..|.++..+
T Consensus 87 ~~le~e~~e~kd~llR~~AE 106 (227)
T PRK14157 87 GQAKKEAAEYLEALQRERAE 106 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 333
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=24.79 E-value=3.6e+02 Score=27.32 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEE--EeccCCcccc-eeeccccceEEEecCCc-cc
Q 000884 197 PLDRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVL--YSTSKRSKAV-RTYKQAECELVKIDINC-CI 272 (1237)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l--~st~~~~~~~-~~y~~~d~~~i~i~~~~-~v 272 (1237)
+....|.+.-+..++++..+ .++|.||++|+-... .+.+ ..|....... -.| ++.|.|++.- .+
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-------~~~~~~~kT~v~~~~~nP~f----nE~F~f~i~~~~l 79 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-------NKVVKTKKTEVVDGAASPSF----NESFSFKVTSRQL 79 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-------CEEeeeeecccEeCCCCCcc----cceEEEECCHHHh
Confidence 44567888888888888877 778999999985321 0111 0111000000 011 1346666532 23
Q ss_pred c-CCeEEEEEecCCcccccceEEEEEeccc
Q 000884 273 Q-GDVVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 273 ~-GDV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
. --+.|.+++.+. ..++..|.++.+.-.
T Consensus 80 ~~~~L~~~V~~~~~-~~~~~~lG~v~ig~~ 108 (137)
T cd08409 80 DTASLSLSVMQSGG-VRKSKLLGRVVLGPF 108 (137)
T ss_pred CccEEEEEEEeCCC-CCCcceEEEEEECCc
Confidence 2 235566666554 445667778777643
No 334
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=24.67 E-value=5.6e+02 Score=24.78 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=45.1
Q ss_pred eEEEeEEeeccCCcCCC-CCcceEEEEEecCCCcccCCCCcEEEeccCCcccc-eeeccccceEEEecCCccccCCeEEE
Q 000884 202 LTLDCVILRSIPNFDGQ-GGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAV-RTYKQAECELVKIDINCCIQGDVVLE 279 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~-~~y~~~d~~~i~i~~~~~v~GDV~i~ 279 (1237)
|.+.-+.-++++..+.. +.+.||++|...+. ...+.|....... -.|. +.+.|.+. ....-+.|+
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--------~~~~kT~~~~~~~~P~Wn----e~~~~~v~-~~~~~l~~~ 70 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--------RELARTKVKKDTSNPVWN----ETKYILVN-SLTEPLNLT 70 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC--------CcceEeeeecCCCCCcce----EEEEEEeC-CCCCEEEEE
Confidence 44444444456644333 34899999997541 1122222111010 0111 23444443 345567778
Q ss_pred EEecCCcccccceEEEEEecccccc
Q 000884 280 CISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
|++.+. ......|.++.|.-.=+.
T Consensus 71 v~d~~~-~~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 71 VYDFND-KRKDKLIGTAEFDLSSLL 94 (124)
T ss_pred EEecCC-CCCCceeEEEEEEHHHhc
Confidence 888754 234567888887755444
No 335
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.63 E-value=2.2e+02 Score=36.30 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1184 LRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1184 l~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
=+.-..++..|++.|..+.+.+.+-..-||.
T Consensus 131 e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~ 161 (560)
T PF06160_consen 131 EEKNREEIEELKEKYRELRKELLAHSFSYGP 161 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Confidence 3344455666666666666666666666665
No 336
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=24.47 E-value=1e+03 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcH-----HHHHHHHHHHHhcccc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSA-----KLRRIMQTILSLGNAL 1077 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~-----~L~~lL~~IL~lGN~L 1077 (1237)
..++.++..+..|+.+.++|+.+.++- ..+.+.+.+-.+|+..
T Consensus 6 ~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~ 53 (215)
T cd07604 6 ALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKA 53 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 345566677777888888888887642 3455555666666544
No 337
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=24.42 E-value=6.4e+02 Score=34.02 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-hcccccccCCccccccccchhhhhhhhhcccCCccchhHHHHHHHhh
Q 000884 1041 SDLRSSLNVVNSAAEQVRNSAKLRRIMQTILS-LGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAD 1119 (1237)
Q Consensus 1041 ~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~-lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLLhylv~~l~~ 1119 (1237)
.++...+..+..+.+.--++-.+..++++++. .++ +|. ..|.++.+....+++.++..|++..+.+
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~------------~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LND------------SNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhh------------hhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 34444455555555555556666666666332 122 111 1233566666666666777777766654
No 338
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.40 E-value=1.1e+03 Score=31.00 Aligned_cols=15 Identities=27% Similarity=0.104 Sum_probs=6.5
Q ss_pred HHHHHHHHHhccccc
Q 000884 1064 RRIMQTILSLGNALN 1078 (1237)
Q Consensus 1064 ~~lL~~IL~lGN~LN 1078 (1237)
..=++..|+=.|-+|
T Consensus 182 ~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 182 NMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 339
>PF13166 AAA_13: AAA domain
Probab=24.39 E-value=7.4e+02 Score=32.28 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccc
Q 000884 1180 LREFLRFAEAEVRTLASLY---SAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1180 l~~Fl~~a~~~v~~L~~~~---~~~~~~~~~l~~yFGE 1214 (1237)
++.-+...+.++.+|+..+ ....+.+.+.+..||-
T Consensus 436 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~ 473 (712)
T PF13166_consen 436 AKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGF 473 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3344444555555555443 3334555666666663
No 340
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=24.30 E-value=1.2e+03 Score=27.27 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1176 FSKILREFLRFAEAEVRTLASLYSAV 1201 (1237)
Q Consensus 1176 F~~~l~~Fl~~a~~~v~~L~~~~~~~ 1201 (1237)
..+.++.=+..+..++++++.+|..-
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555666666666666655543
No 341
>PRK09039 hypothetical protein; Validated
Probab=24.27 E-value=4e+02 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000884 1140 IQLKFLAEEMQALSKGLEKVVQELSMSEND 1169 (1237)
Q Consensus 1140 i~l~~L~~e~~~l~k~l~kl~~el~~s~~d 1169 (1237)
-++..|..+|.+|++.+..++.+|...+..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888777766543
No 342
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=5.9e+02 Score=32.08 Aligned_cols=63 Identities=14% Similarity=0.027 Sum_probs=38.7
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHH-HHHHHHHHHhhcCCC
Q 000884 1175 NFSKILREFL--RFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFE-QAQIGVIRSADRGYM 1237 (1237)
Q Consensus 1175 ~F~~~l~~Fl--~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e-~~~s~l~~F~dr~~~ 1237 (1237)
.|...+++|- .-++.++..|+...++..+..++|-+|-||-.+-+.-. -.+..|-+.+-|+||
T Consensus 436 ~~~~~VQe~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~g~g 501 (758)
T COG4694 436 EFKSDVQEYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLKGYG 501 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Confidence 4556666664 56677788888888888888888888877754433111 123444444445544
No 343
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=24.06 E-value=6.1e+02 Score=25.03 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=51.3
Q ss_pred CceeEEEeEEeeccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccce-eeccccceEEEecC-C-ccccC-
Q 000884 199 DRALTLDCVILRSIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVR-TYKQAECELVKIDI-N-CCIQG- 274 (1237)
Q Consensus 199 ~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~-~y~~~d~~~i~i~~-~-~~v~G- 274 (1237)
...|.+.=|.-++++..+ .+.|.||++|+-.... ....-+.|........ .|. +.|.|++ . -.+.+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~-----~~~~~~kT~v~~~~~nP~wn----E~F~f~~~~~~~l~~~ 81 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDP-----QKTTKRKTKVVRKTRNPTFN----EMLVYDGLPVEDLQQR 81 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCC-----ccCCceeCCccCCCCCCCcc----cEEEEecCChHHhCCC
Confidence 356777778888888888 7789999999974210 0000112211111110 121 3366654 2 12443
Q ss_pred CeEEEEEecCCcccccceEEEEEecccccc
Q 000884 275 DVVLECISLNDDLEREEMMFRVVFNTAFIR 304 (1237)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1237)
-+.|.+++.+. ..+...|.++.|+-.-+.
T Consensus 82 ~L~~~V~d~d~-~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 82 VLQVSVWSHDS-LVENEFLGGVCIPLKKLD 110 (122)
T ss_pred EEEEEEEeCCC-CcCCcEEEEEEEeccccc
Confidence 34467777653 345567777777665544
No 344
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=24.01 E-value=96 Score=38.17 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCcEEEEEec--cCCccchhHHHHHHHHHH----cCCCCHHHHHHHHHHhchhhhhccCCC
Q 000884 99 TMEVIHHFLRSTESWLSLGQHNVLMMHCE--RGGWPVLAFMLAALLIYR----KQYSGEYKTLDMIYRQAPRELLQLLSP 172 (1237)
Q Consensus 99 ~l~~l~~~~~~~~~wL~~d~~NVvvvHCk--~Gkgrt~g~~ia~yL~y~----~~~~~~~~al~~~~~~~~~~~~~gv~~ 172 (1237)
.|..|.+.++.+..= +|.+..-+||-. -|||-||+++ .+.|... |.|++.. |-.+ |.+- + ..|.
T Consensus 52 ~l~~m~~~L~~lg~p--~d~~~l~iIHVAGTkGKGStcaF~-~SILr~~g~rtG~yTSPH--Ll~v-rErI-r-iNGq-- 121 (496)
T KOG2525|consen 52 TLPRMRKLLERLGNP--EDQNSLNIIHVAGTKGKGSTCAFT-ESILRQQGLRTGFYTSPH--LLSV-RERI-R-INGQ-- 121 (496)
T ss_pred CHHHHHHHHHHhCCh--hhhhheeEEEEecCCCCcchHHHH-HHHHHhcccccccccChh--hcch-hheE-E-ECCE--
Confidence 567777776666443 345556666665 4899885554 4444333 3577775 3223 2221 1 1232
Q ss_pred CCCCchHHHHHHHHHHhh
Q 000884 173 LNPVPSQLRYLQYVSRRN 190 (1237)
Q Consensus 173 l~~~PSQ~RYv~Yf~~ll 190 (1237)
.=|+.+|.+||-++.
T Consensus 122 ---pIS~e~F~~~f~~v~ 136 (496)
T KOG2525|consen 122 ---PISEEKFTKYFWEVY 136 (496)
T ss_pred ---ECCHHHHHHHHHHHH
Confidence 349999999998643
No 345
>PRK11637 AmiB activator; Provisional
Probab=23.93 E-value=2.8e+02 Score=33.92 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000884 1187 AEAEVRTLASLYSAVGRNV 1205 (1237)
Q Consensus 1187 a~~~v~~L~~~~~~~~~~~ 1205 (1237)
.+.++..+++.+....+.+
T Consensus 108 l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 346
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=23.88 E-value=7.7e+02 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCCHHHHH-HHHhcCCCHHHHHHHhcc
Q 000884 975 AIDADQVE-NLIKFCPTKEEMDLLKGY 1000 (1237)
Q Consensus 975 ~L~~e~l~-~Ll~~~Pt~eE~~~L~~~ 1000 (1237)
.|+.+.|. .|..+-+|.|-|+.+-.|
T Consensus 3 ~fsee~l~~kL~~L~~TQeSIqtlS~W 29 (325)
T KOG2669|consen 3 AFSEEALEKKLAELSNTQESIQTLSLW 29 (325)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHH
Confidence 35555543 466666777777766553
No 347
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=23.77 E-value=74 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=17.9
Q ss_pred cCCCcEEEEEeccCCccchhHHHHHHHHH
Q 000884 116 LGQHNVLMMHCERGGWPVLAFMLAALLIY 144 (1237)
Q Consensus 116 ~d~~NVvvvHCk~Gkgrt~g~~ia~yL~y 144 (1237)
.+.+..||+||..++.| +..+|.+|..
T Consensus 65 ~~~~~~vv~yC~~sg~r--s~~aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFHCEFSSKR--GPRMARHLRN 91 (121)
T ss_pred cCCCCEEEEECCCcccc--HHHHHHHHHH
Confidence 46789999999744456 4455555553
No 348
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=23.77 E-value=1.3e+03 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1024 ESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQV 1057 (1237)
Q Consensus 1024 ~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el 1057 (1237)
+.-++++-|.......+...+..-..+..|...+
T Consensus 73 d~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~ 106 (336)
T PF05055_consen 73 DSSLEASDFCEALLKCIHRARDNYLPIRRALKQF 106 (336)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 3334444444444444444444444444444443
No 349
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.56 E-value=3.3e+02 Score=30.77 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLASLYSA 1200 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~ 1200 (1237)
+.++..++..+.++.+|+....+
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 350
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=23.48 E-value=6.3e+02 Score=28.40 Aligned_cols=14 Identities=36% Similarity=0.639 Sum_probs=7.2
Q ss_pred HHHHhcccccccCC
Q 000884 1069 TILSLGNALNQGTA 1082 (1237)
Q Consensus 1069 ~IL~lGN~LN~gt~ 1082 (1237)
+.+..|+-+..++.
T Consensus 77 ~M~~~g~~~g~~S~ 90 (229)
T cd07616 77 YMIDAGNEFGPGTA 90 (229)
T ss_pred HHHHHHHhcCCCCc
Confidence 34555555555543
No 351
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=23.46 E-value=4.7e+02 Score=26.20 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=20.2
Q ss_pred EEEeEEeeccCCcCCCCCcceEEEEEecC
Q 000884 203 TLDCVILRSIPNFDGQGGCRPIFRIYGQD 231 (1237)
Q Consensus 203 ~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1237)
.++-+.=++++..+..+.|.||++|+..+
T Consensus 4 ~v~V~~a~~L~~~d~~g~~dpyv~v~~~~ 32 (135)
T cd04017 4 RAYIYQARDLLAADKSGLSDPFARVSFLN 32 (135)
T ss_pred EEEEEEeecCcCCCCCCCCCCEEEEEECC
Confidence 34444445677767667899999999754
No 352
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.45 E-value=2.6e+02 Score=28.51 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDAL 1208 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l 1208 (1237)
..++.-++....+++.++.....++....++
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777766655
No 353
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.45 E-value=2.5e+02 Score=37.32 Aligned_cols=68 Identities=19% Similarity=0.412 Sum_probs=41.3
Q ss_pred hhhhhhhhhcccCCccc-hhHHHHHHHhhcCcccccccccccChH---HHh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 000884 1092 DSLLKLTDTRARNNKMT-LMHYLCKVLADKLPELLDFSEDLTSLE---PAS-KIQLKFLAEEMQALSKGLEKVVQEL 1163 (1237)
Q Consensus 1092 ~sL~KL~dtKs~d~k~t-LLhylv~~l~~~~pell~f~~dL~~le---~As-ki~l~~L~~e~~~l~k~l~kl~~el 1163 (1237)
+||..|.+|+....+.. ||+||.+-|.+ |..--+||.... .-. .+.+.....+++++...+.++...-
T Consensus 174 eSlkim~ET~qK~ekI~ell~yieerLre----LEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r 246 (1200)
T KOG0964|consen 174 ESLKIMEETKQKREKINELLKYIEERLRE----LEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDR 246 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 68888888887765544 78998876653 222223332222 111 1345556678888888888887554
No 354
>PRK06798 fliD flagellar capping protein; Validated
Probab=23.44 E-value=3e+02 Score=33.96 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
..|....+....+...|+....++......|..+|+-
T Consensus 400 ~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~~ 436 (440)
T PRK06798 400 TQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAMTKQ 436 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455555555666666666666666666666653
No 355
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=23.42 E-value=2.4e+02 Score=32.44 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhccccc
Q 000884 1046 SLNVVNSAAEQVRNSAKLRRIMQTILSLGNALN 1078 (1237)
Q Consensus 1046 ~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN 1078 (1237)
.++.+.....++.+.-.-..+=.++=.+...++
T Consensus 131 ~l~~ll~~~~~ll~~~~~~~l~~~l~~l~~~l~ 163 (291)
T TIGR00996 131 EIDDLLGSLTRLLNGLDPEKLNAILNALAEALA 163 (291)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Confidence 355677777666665444444444444444443
No 356
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.40 E-value=9.9e+02 Score=31.04 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=8.6
Q ss_pred HHHHHHHHHHcccCCC
Q 000884 1202 GRNVDALILYFGEDPA 1217 (1237)
Q Consensus 1202 ~~~~~~l~~yFGEdp~ 1217 (1237)
......+|.-+|.|..
T Consensus 187 ~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 187 KEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHhCCCcc
Confidence 3344555666666543
No 357
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=23.02 E-value=5.1e+02 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=20.6
Q ss_pred eEEEeEEeeccCCcCCCCCcceEEEEEecC
Q 000884 202 LTLDCVILRSIPNFDGQGGCRPIFRIYGQD 231 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1237)
|.+.-+.-.+++..+..+.|.||++|+.++
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~ 32 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG 32 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC
Confidence 344444445677776667899999999743
No 358
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=22.90 E-value=1.1e+02 Score=33.02 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHcCCC-----------cEEEEEec-cCCccchhHHHHHHHHHHcCC
Q 000884 101 EVIHHFLRSTESWLSLGQH-----------NVLMMHCE-RGGWPVLAFMLAALLIYRKQY 148 (1237)
Q Consensus 101 ~~l~~~~~~~~~wL~~d~~-----------NVvvvHCk-~Gkgrt~g~~ia~yL~y~~~~ 148 (1237)
+.|-.+|+.+..|+..+.. ..+.||.- .|-||| |=+++.+++....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~H~~f~~IHPF~DGNGRt-~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 88 SELAILLDDVRYWLQNGTFSPDEIAIRFHHRLVAIHPFPNGNGRH-ARLATDLLLEQQGY 146 (186)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHheecCcCCCCcHH-HHHHHHHHHHHCCC
Confidence 6788889999999875321 56889985 699997 77777776665544
No 359
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.84 E-value=9.4e+02 Score=27.19 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHcc
Q 000884 1198 YSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1198 ~~~~~~~~~~l~~yFG 1213 (1237)
+..+.+.+.+++.-||
T Consensus 151 ve~i~k~l~~~L~k~G 166 (238)
T PRK14143 151 YQGLYKQLVDVLKRLG 166 (238)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3444444444444444
No 360
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=22.81 E-value=1.7e+02 Score=34.00 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHcCC--------------CcEEEEEec-cCCccchhHHHHHHHHHHc
Q 000884 99 TMEVIHHFLRSTESWLSLGQ--------------HNVLMMHCE-RGGWPVLAFMLAALLIYRK 146 (1237)
Q Consensus 99 ~l~~l~~~~~~~~~wL~~d~--------------~NVvvvHCk-~Gkgrt~g~~ia~yL~y~~ 146 (1237)
.-+-+...++++..||.... -..|.||-- .|.|||+-++..-+||..|
T Consensus 333 ~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraG 395 (472)
T KOG3824|consen 333 SPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAG 395 (472)
T ss_pred ChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcC
Confidence 55777788889999998532 256777754 7999997666655555443
No 361
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=22.81 E-value=1.4e+02 Score=37.28 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=15.4
Q ss_pred HHHHHHHHcccCCCCCCHHHHHHHHHHHh
Q 000884 1204 NVDALILYFGEDPARCPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1204 ~~~~l~~yFGEdp~~~~~e~~~s~l~~F~ 1232 (1237)
-|+.|+.-|-..-..-.++.+|..|.+++
T Consensus 153 ~YDaLLd~yEpg~t~~~ld~~F~~lk~~l 181 (494)
T PF02074_consen 153 PYDALLDDYEPGMTTEKLDEIFAELKAFL 181 (494)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHHH
T ss_pred cHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 35556555544433334667777666554
No 362
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=22.73 E-value=8.5e+02 Score=29.82 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=20.6
Q ss_pred cccccccccChHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000884 1124 LLDFSEDLTSLEPASKIQLKFLAEEMQALSKGLEKVVQ 1161 (1237)
Q Consensus 1124 ll~f~~dL~~le~Aski~l~~L~~e~~~l~k~l~kl~~ 1161 (1237)
+..+..||+.+...-.-...++..-|..+...+.+++.
T Consensus 157 l~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~ 194 (426)
T smart00806 157 LKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS 194 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444455555566666666655554
No 363
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=22.68 E-value=5.8e+02 Score=24.70 Aligned_cols=85 Identities=9% Similarity=0.165 Sum_probs=42.5
Q ss_pred eEEEeEEeeccCCcCC---C-CCcceEEEEEecCCCcccCCCCcEEEeccCCcccce-eeccccceEEEecCCcc-ccCC
Q 000884 202 LTLDCVILRSIPNFDG---Q-GGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVR-TYKQAECELVKIDINCC-IQGD 275 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~---~-~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~-~y~~~d~~~i~i~~~~~-v~GD 275 (1237)
|.++-+.-++++..+. . +.|.||++|+-+. ..+.|....+... .|. +.+.|.+.-. ..-.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~----------~~~kT~v~~~t~nPvWn----e~f~f~v~~~~~~~~ 68 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR----------RVFRTSWRRHTLNPVFN----ERLAFEVYPHEKNFD 68 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC----------EeEeeeeecCCCCCccc----ceEEEEEeCccCCCE
Confidence 4555566667776543 2 3499999999643 2233321111111 222 1234433111 1123
Q ss_pred eEEEEEecCCcccccceEEEEEeccc
Q 000884 276 VVLECISLNDDLEREEMMFRVVFNTA 301 (1237)
Q Consensus 276 V~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1237)
+.|+|++.+. .++...|.++.|.-.
T Consensus 69 L~~~V~D~d~-~~~dd~IG~~~l~L~ 93 (108)
T cd04039 69 IQFKVLDKDK-FSFNDYVATGSLSVQ 93 (108)
T ss_pred EEEEEEECCC-CCCCcceEEEEEEHH
Confidence 5678887653 345566777766543
No 364
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=22.53 E-value=6.4e+02 Score=35.02 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 000884 1061 AKLRRIMQTILSLGNALNQGT 1081 (1237)
Q Consensus 1061 ~~L~~lL~~IL~lGN~LN~gt 1081 (1237)
..+..+|..|..+||--.++.
T Consensus 78 ~~i~~~~~~IRk~GN~AaH~~ 98 (1123)
T PRK11448 78 DEILDVFHKLRKIGNKAVHEF 98 (1123)
T ss_pred HHHHHHHHHHHHhChhhhcCC
Confidence 467788889999999877643
No 365
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=22.47 E-value=2e+02 Score=28.57 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1177 SKILREFLRFAEAEVRTLASLYSAVGRNVDALI 1209 (1237)
Q Consensus 1177 ~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~ 1209 (1237)
++.+.-|+++.++++++|+++...++...+.++
T Consensus 93 kenLhvflEkLE~EvreLEQlV~DLE~WLDalL 125 (135)
T PF15466_consen 93 KENLHVFLEKLEKEVRELEQLVRDLEEWLDALL 125 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999888775
No 366
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=22.46 E-value=2.1e+02 Score=36.72 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=52.4
Q ss_pred hHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 000884 1134 LEPASKI-QLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAE--------------AEVRTLASLY 1198 (1237)
Q Consensus 1134 le~Aski-~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~--------------~~v~~L~~~~ 1198 (1237)
++.|.++ |+..|.+++..|.|.+.|.++... .+.-...--.....|..|+..+- ..+..|++.+
T Consensus 39 i~n~~ki~Dw~~i~~eFd~L~k~~~K~~~~~~-~~~~P~~yir~l~~Led~v~e~~~~ke~~Kkms~~nakaln~lkQkl 117 (595)
T PF05470_consen 39 IRNAMKINDWSSILTEFDKLNKQLEKSKKIQQ-NEGIPRFYIRALVELEDFVNETWADKEAKKKMSKNNAKALNTLKQKL 117 (595)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHhhhhh-cCCCChhHHHHHHHHHHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHH
Confidence 3455555 688888899999988888765221 11111111112234566666521 3456677777
Q ss_pred HHHHHHHHHHHHHcccCCCCC
Q 000884 1199 SAVGRNVDALILYFGEDPARC 1219 (1237)
Q Consensus 1199 ~~~~~~~~~l~~yFGEdp~~~ 1219 (1237)
++..+.|.+.+.-|-|||...
T Consensus 118 kK~~k~~e~~i~~yrenPe~~ 138 (595)
T PF05470_consen 118 KKYNKEYEAQIAKYRENPEAF 138 (595)
T ss_pred HhhhhhHHHHHHHHHhCCccc
Confidence 888888888888898887543
No 367
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=22.37 E-value=6.5e+02 Score=26.24 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=34.7
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHH-HhhcccCCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1134 LEPASKIQLKFLAEEMQALSKGLEKVVQ-ELSMSENDGA---ISENFSKILREFLRFAEAEVRTLASLYSAVG 1202 (1237)
Q Consensus 1134 le~Aski~l~~L~~e~~~l~k~l~kl~~-el~~s~~d~~---~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~ 1202 (1237)
+..+..-+|..|.+.++++...+.++.+ +..... +.. ........-..|++....+.+.+++.+.+..
T Consensus 60 ~~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~~~~-~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~ 131 (145)
T PF14942_consen 60 CIELMQQNLEQLLERLQAANSMCSRLQQKEQEKQK-DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKE 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777777666666542 222211 111 1122334445666666666666666655543
No 368
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.25 E-value=4.4e+02 Score=28.93 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHH
Q 000884 1173 SENFSKILREFLRFAE-------AEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRS 1231 (1237)
Q Consensus 1173 ~d~F~~~l~~Fl~~a~-------~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F 1231 (1237)
.+.|...+.+....++ .++..|.+.++..+....+++...+-||+ .+..+...|.+-
T Consensus 127 ~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~--~~~~v~~~l~~~ 190 (201)
T PF13851_consen 127 YRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA--ALSQVSKKLEDV 190 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHH
Confidence 3456666666655554 56666667777777778888888888876 344444444433
No 369
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=22.25 E-value=4.8e+02 Score=26.32 Aligned_cols=79 Identities=5% Similarity=0.032 Sum_probs=41.4
Q ss_pred ccCCcCCCCCcceEEEEEecCCCcccCCCCcEEEeccCCcccceeeccccceEEEecC-CccccCCeEEEEEecCCcccc
Q 000884 211 SIPNFDGQGGCRPIFRIYGQDPFVANDRSAKVLYSTSKRSKAVRTYKQAECELVKIDI-NCCIQGDVVLECISLNDDLER 289 (1237)
Q Consensus 211 ~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~~~l~st~~~~~~~~~y~~~d~~~i~i~~-~~~v~GDV~i~~~h~~~~~~~ 289 (1237)
+++. +..+.+.||++|+.++.. ..++++..+.. . .|. +.|.|.. ...-...+.|+|++.+. ..+
T Consensus 39 ~L~~-d~~g~~DPYVkV~~~~~~----~kT~vi~~t~n----P-vWN----E~F~f~~~~~~~~~~L~v~V~D~d~-~s~ 103 (127)
T cd04032 39 GLWG-DYFTSTDGYVKVFFGGQE----KRTEVIWNNNN----P-RWN----ATFDFGSVELSPGGKLRFEVWDRDN-GWD 103 (127)
T ss_pred CCCc-CcCCCCCeEEEEEECCcc----ccCceecCCCC----C-cCC----CEEEEecccCCCCCEEEEEEEeCCC-CCC
Confidence 4552 444678999999976421 12223322210 0 111 2244432 22234567788888664 335
Q ss_pred cceEEEEEecccccc
Q 000884 290 EEMMFRVVFNTAFIR 304 (1237)
Q Consensus 290 ~~~~Fr~~FnT~FI~ 304 (1237)
.+.|.++.|.-.-+.
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 567777777655433
No 370
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=22.19 E-value=4.7e+02 Score=33.66 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000884 1038 TQVSDLRSSLNVVNS 1052 (1237)
Q Consensus 1038 ~~v~dl~~~l~~v~~ 1052 (1237)
..+.+|...|+.|..
T Consensus 480 rnvR~LegaL~rL~a 494 (617)
T PRK14086 480 RNIRELEGALIRVTA 494 (617)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344455555554433
No 371
>PHA03332 membrane glycoprotein; Provisional
Probab=22.15 E-value=8.7e+02 Score=32.95 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhcCCC
Q 000884 1223 QAQIGVIRSADRGYM 1237 (1237)
Q Consensus 1223 ~~~s~l~~F~dr~~~ 1237 (1237)
+.++|=++.++.|||
T Consensus 1007 ~myrTCl~Sl~aG~L 1021 (1328)
T PHA03332 1007 GMYRTCLKSLLAGTL 1021 (1328)
T ss_pred HHHHHHHHHhhcccc
Confidence 445566666666654
No 372
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=22.14 E-value=7.4e+02 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.3
Q ss_pred eEEEeEEeeccCCcCC--CCCcceEEEEEecC
Q 000884 202 LTLDCVILRSIPNFDG--QGGCRPIFRIYGQD 231 (1237)
Q Consensus 202 l~L~~I~l~~iP~f~~--~~gcrP~~~Iy~~~ 231 (1237)
|.+.-+.-++++..+. .+.|.||++|+.+.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~ 34 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA 34 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC
Confidence 3444444556676665 57799999999753
No 373
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.14 E-value=1.4e+03 Score=29.17 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhhhcccCCccchh
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQV----RNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRARNNKMTLM 1110 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el----~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~dtKs~d~k~tLL 1110 (1237)
.+...+.++...|+.|+.+.... +.+.+.+.+...+.+|-+.|+.|...+ -.-|. +.|..|..+ .+...|+
T Consensus 375 ~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~-~~p~~-~el~~l~~~---~~~d~~v 449 (582)
T PF09731_consen 375 GRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGS-PRPFE-DELRALKEL---APDDELV 449 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCHH-HHHHHHHHh---CCCChHH
Confidence 34445555555666665555444 456777888888888999998886422 01121 234444333 3344677
Q ss_pred HHHHHHHh
Q 000884 1111 HYLCKVLA 1118 (1237)
Q Consensus 1111 hylv~~l~ 1118 (1237)
+.++..|.
T Consensus 450 ~~~l~~l~ 457 (582)
T PF09731_consen 450 DAALSSLP 457 (582)
T ss_pred HHHHHhcC
Confidence 76665544
No 374
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.86 E-value=4.5e+02 Score=27.85 Aligned_cols=58 Identities=17% Similarity=0.390 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHhcCCCHHHHH-HHhcccCCccccChhHHHHHHH-hcCc
Q 000884 962 PELMRSVLALEDSAIDADQVENLIKFCPTKEEMD-LLKGYTGDKEKLGKCEQFFLEL-MKVP 1021 (1237)
Q Consensus 962 ~el~~aIl~lD~~~L~~e~l~~Ll~~~Pt~eE~~-~L~~~~~~~~~L~~~EqF~~~l-~~vp 1021 (1237)
.|+...|+ |...|+...-+.++++.-+.+--+ .+..|..+-.+|.+--.-+..+ .+||
T Consensus 54 yD~~~~il--~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk~iLSriP 113 (207)
T KOG4025|consen 54 YDFTKVIL--DDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALKRILSRIP 113 (207)
T ss_pred HHHHHHHH--hhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHHHHHHhCc
Confidence 45665555 556677777788888773322111 3444555545555544444433 3455
No 375
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.64 E-value=6.9e+02 Score=27.13 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=41.5
Q ss_pred cccccchhhhhhhhh-cccCCccchhHHHHHHHhhcCccc---------ccccccccChHHHhhhhHHHHHHHHHHHHHH
Q 000884 1086 AIGFRLDSLLKLTDT-RARNNKMTLMHYLCKVLADKLPEL---------LDFSEDLTSLEPASKIQLKFLAEEMQALSKG 1155 (1237)
Q Consensus 1086 A~GFkL~sL~KL~dt-Ks~d~k~tLLhylv~~l~~~~pel---------l~f~~dL~~le~Aski~l~~L~~e~~~l~k~ 1155 (1237)
..=|.|-.|.|+.-- ++.. .++.=++|-..+.+..-++ ..|..+. ..+.+..++.|..++.++++.
T Consensus 9 ~~~y~lKELEK~~pK~~gI~-~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~---~~~~~~~~~~l~~~~~~~~~~ 84 (188)
T PF03962_consen 9 KDFYTLKELEKLAPKEKGIV-SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA---KQKRQNKLEKLQKEIEELEKK 84 (188)
T ss_pred CCcccHHHHHHHcccccCCc-hhhHHHHHHHHhccccchhhhccCeeEEEecChHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345788889988744 3332 3444455554444322111 1222211 122234566777777777777
Q ss_pred HHHHHHHhhcc
Q 000884 1156 LEKVVQELSMS 1166 (1237)
Q Consensus 1156 l~kl~~el~~s 1166 (1237)
+..++..+...
T Consensus 85 i~~l~~~i~~~ 95 (188)
T PF03962_consen 85 IEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 376
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.57 E-value=3.4e+02 Score=27.75 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYF 1212 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yF 1212 (1237)
+-..|.+.++++...+.++...+..... ..+.|.+.+.. +++....+.++...+.++-...+.|-...
T Consensus 50 ~Q~~L~~riKevd~~~~~l~~~~~erqk---~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~~ie~LN~~L 117 (131)
T PF10158_consen 50 DQNALAKRIKEVDQEIAKLLQQMVERQK---RFAKFAEQLEK-VNELSQQLSRCQSLLNQTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555555555555555444432211 11344444444 44444444444444444444444443333
No 377
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=21.33 E-value=1.4e+03 Score=29.86 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccCCCC--------CCHHHHHHHHHHHh
Q 000884 1174 ENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALI---LYFGEDPAR--------CPFEQAQIGVIRSA 1232 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~---~yFGEdp~~--------~~~e~~~s~l~~F~ 1232 (1237)
.-|-..|+.|++.+..--..+-+.+..+++.-+.|+ .-.+||..+ ...|.++.+|+.-|
T Consensus 455 ~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~W 524 (677)
T PF05664_consen 455 SCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRW 524 (677)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHH
Confidence 456678888888876533333344444444444444 334566554 23667776665443
No 378
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.12 E-value=5.2e+02 Score=29.59 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=10.4
Q ss_pred ccccccccchhhhhhh
Q 000884 1083 RGAAIGFRLDSLLKLT 1098 (1237)
Q Consensus 1083 rg~A~GFkL~sL~KL~ 1098 (1237)
||...|=-|+.|..+.
T Consensus 29 rG~~lg~~l~~l~~~l 44 (267)
T PF11887_consen 29 RGEQLGETLDDLNTLL 44 (267)
T ss_pred cchhHHHHHHHHHHHH
Confidence 5667776666666654
No 379
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=21.06 E-value=4.9e+02 Score=29.79 Aligned_cols=77 Identities=31% Similarity=0.697 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000884 699 NSSTSLSTAPLPAPATAKSTFPPPPPPPPPPTPPLKTPVFNRNTDASFSTPSPPASTVTLSTTSSPPTPPPPPKPPLKEQ 778 (1237)
Q Consensus 699 ppp~~~~ppp~p~~ppp~~~~~Ppppppppp~pp~~~~~~~~~~~~~~~ppppp~pp~~~~~~~~~pppppppppp~~~~ 778 (1237)
+......+.|.|..++.+...+|.+++|..++.| .+++.+.+ ..+..++|+++..+..
T Consensus 34 Pa~A~AdPaPtPt~PPtt~~aPP~p~~P~atPaP---------------~appt~~P-------AdPnA~~Pp~PadPna 91 (297)
T PF07174_consen 34 PATAQADPAPTPTAPPTTTTAPPAPPPPAATPAP---------------TAPPTPPP-------ADPNAPPPPPPADPNA 91 (297)
T ss_pred cccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCC---------------CCCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 000884 779 SAIRAGPPPPPPPPLYSGS 797 (1237)
Q Consensus 779 ~~~~~~ppppPpPP~~~~~ 797 (1237)
...+...+..++|+.+..+
T Consensus 92 ~~pppadpnap~P~~pe~g 110 (297)
T PF07174_consen 92 APPPPADPNAPPPPAPEPG 110 (297)
T ss_pred CCCCCCCCCCCCCCCcccc
No 380
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.05 E-value=9.9e+02 Score=27.27 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHhcccccc
Q 000884 1060 SAKLRRIMQTILSLGNALNQ 1079 (1237)
Q Consensus 1060 S~~L~~lL~~IL~lGN~LN~ 1079 (1237)
...+..++.-+-.+...+|.
T Consensus 166 ~~~l~~~l~~l~~l~~~l~~ 185 (291)
T TIGR00996 166 GPQLRNLLDGLAQLTAALNA 185 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 44566666665555555554
No 381
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=21.02 E-value=1.7e+03 Score=28.02 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccc--hhhhhhhhhc
Q 000884 1035 QFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRL--DSLLKLTDTR 1101 (1237)
Q Consensus 1035 ~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL--~sL~KL~dtK 1101 (1237)
.|...+......+.....++..+.. .=..++..++.+...++.+.......++.. ++|..+...+
T Consensus 104 ~~~~el~~~~r~~k~~e~~~~~~~~--~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~ 170 (508)
T KOG1840|consen 104 WLEDELALTQRALKQSERSVAQLEE--EKLHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEK 170 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhcccc
Confidence 4555555555666666666666654 123344455556666776655444455422 3455444333
No 382
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.95 E-value=9.6e+02 Score=26.86 Aligned_cols=10 Identities=30% Similarity=0.042 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000884 1181 REFLRFAEAE 1190 (1237)
Q Consensus 1181 ~~Fl~~a~~~ 1190 (1237)
+++++.+.++
T Consensus 126 r~e~~~ml~e 135 (230)
T PF03904_consen 126 REENKSMLQE 135 (230)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 383
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.93 E-value=1.4e+03 Score=32.53 Aligned_cols=271 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccccccccccccCCCChH--HHHHHHhhccCCC--CCHHHHHHHHhcCCCHHHHHHHhcccCCccccChhHHHHHHH-hc
Q 000884 945 RRAYNCEIMLSKVKVPLP--ELMRSVLALEDSA--IDADQVENLIKFCPTKEEMDLLKGYTGDKEKLGKCEQFFLEL-MK 1019 (1237)
Q Consensus 945 kRa~Ni~I~L~klk~~~~--el~~aIl~lD~~~--L~~e~l~~Ll~~~Pt~eE~~~L~~~~~~~~~L~~~EqF~~~l-~~ 1019 (1237)
+....|-.+-+.|+..-+ +++..|...-... ...+.-..+...-=..+++..|+.. .+.|.... ..
T Consensus 675 ~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~---------~~~~~~l~~~e 745 (1311)
T TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG---------RQSIIDLKEKE 745 (1311)
T ss_pred ccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHhh
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccccCCccccccccchhhhhhhh
Q 000884 1020 VPRVESKLRVFSFKIQFHTQVSDLRSSLNVVNSAAEQVRNSAKLRRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTD 1099 (1237)
Q Consensus 1020 vp~l~~RL~~l~fk~~f~~~v~dl~~~l~~v~~A~~el~~S~~L~~lL~~IL~lGN~LN~gt~rg~A~GFkL~sL~KL~d 1099 (1237)
+|.++.++. +....+.+++..+..+......+.........|.--+..-..++.-..+-.. +|+.|..-..
T Consensus 746 ip~l~~~l~------~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~---qie~l~~~l~ 816 (1311)
T TIGR00606 746 IPELRNKLQ------KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVER---KIAQQAAKLQ 816 (1311)
T ss_pred chhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhc
Q ss_pred hcccCCccchhHHHHHHHhhcCcccccccccccChHHHhhhhHHHH-----------------HHHHHHHHHHHHHHHHH
Q 000884 1100 TRARNNKMTLMHYLCKVLADKLPELLDFSEDLTSLEPASKIQLKFL-----------------AEEMQALSKGLEKVVQE 1162 (1237)
Q Consensus 1100 tKs~d~k~tLLhylv~~l~~~~pell~f~~dL~~le~Aski~l~~L-----------------~~e~~~l~k~l~kl~~e 1162 (1237)
..+.+....=|.--+..+....-.+..=.+++..-....+-.+..| .....++...++.++.+
T Consensus 817 ~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~e 896 (1311)
T TIGR00606 817 GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTE 896 (1311)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcC
Q 000884 1163 LSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPARCPFEQAQIGVIRSADRG 1235 (1237)
Q Consensus 1163 l~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~e~~~s~l~~F~dr~ 1235 (1237)
+......-..-+.=..-+...+..+..+...+........+....-+.-|.++-. .+..+...+..|++++
T Consensus 897 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK--NIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
No 384
>PLN02939 transferase, transferring glycosyl groups
Probab=20.73 E-value=9.1e+02 Score=32.85 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccc---hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000884 1146 AEEMQALSKGLEKVVQELSMSENDGAIS---ENFSK----ILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGEDPAR 1218 (1237)
Q Consensus 1146 ~~e~~~l~k~l~kl~~el~~s~~d~~~~---d~F~~----~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1218 (1237)
.+++.++...+.+++.+-+.+..+.+.. -.|.. .+..++-...-...+...+.+.+-+.-..++.+|.+--.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~~~~~~~~~~ 461 (977)
T PLN02939 382 QESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGK 461 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 4566677777777766655433322211 11221 1122211111111222233344444455566666553222
Q ss_pred CCHHHHHHHHHHHhh
Q 000884 1219 CPFEQAQIGVIRSAD 1233 (1237)
Q Consensus 1219 ~~~e~~~s~l~~F~d 1233 (1237)
.=.++++.|..|..
T Consensus 462 -~~~~~~~~~~~~~~ 475 (977)
T PLN02939 462 -NEREAVENFLKLTL 475 (977)
T ss_pred -chHHHHHHHHHhcc
Confidence 23456666666654
No 385
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.63 E-value=8.9e+02 Score=26.82 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHcc
Q 000884 1198 YSAVGRNVDALILYFG 1213 (1237)
Q Consensus 1198 ~~~~~~~~~~l~~yFG 1213 (1237)
++.+.+.+.++++-||
T Consensus 99 vemi~k~~~~~L~k~G 114 (208)
T PRK14155 99 VEMTEKELLGAFERNG 114 (208)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3444444444444444
No 386
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.51 E-value=5.1e+02 Score=31.68 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccCC
Q 000884 1141 QLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLY---SAVGRNVDALILYFGEDP 1216 (1237)
Q Consensus 1141 ~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~---~~~~~~~~~l~~yFGEdp 1216 (1237)
....|+.+++++++.+..++.++..+..+ .+++..=+++.+..+..|+... ...-..+-..+.++|.++
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~-------l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADD-------LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34556666777777777777666655543 2445555666666666666544 222233344456677776
No 387
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=20.37 E-value=5.4e+02 Score=30.39 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1174 ENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALI 1209 (1237)
Q Consensus 1174 d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~ 1209 (1237)
..|.+.|++-++..........+.++++.+..+++.
T Consensus 197 ~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~el~ 232 (335)
T PF11867_consen 197 KKFSERLEEIIEKYNNRSISSEEVIEELIKLAKELR 232 (335)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 456666666666655554444444444444444433
No 388
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=20.34 E-value=3.8e+02 Score=31.67 Aligned_cols=24 Identities=8% Similarity=-0.044 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000884 1178 KILREFLRFAEAEVRTLASLYSAV 1201 (1237)
Q Consensus 1178 ~~l~~Fl~~a~~~v~~L~~~~~~~ 1201 (1237)
+...+++...+..+...+....++
T Consensus 126 ~~n~~~~~~L~~~I~ag~~~~~~l 149 (333)
T PF05816_consen 126 EKNWEYYQELEKYIAAGELKLEEL 149 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333
No 389
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.34 E-value=9e+02 Score=27.43 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=32.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000884 1137 ASKIQLKFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTLASLYSAVGRNVDALILYFGE 1214 (1237)
Q Consensus 1137 Aski~l~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L~~~~~~~~~~~~~l~~yFGE 1214 (1237)
+.+..++.+..++..|...++.+.........++ .........-+..|+.-...+..+...+.....++. +||+
T Consensus 42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~---~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~-~l~~ 115 (264)
T PF06008_consen 42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKA---QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE-SLNE 115 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc
Confidence 3455555555555555555555544443322221 223333334444444444444444444444444443 4444
No 390
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=20.23 E-value=5.6e+02 Score=22.44 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHHH
Q 000884 1143 KFLAEEMQALSKGLEKVVQELSMSENDGAISENFSKILREFLRFAEAEVRTL 1194 (1237)
Q Consensus 1143 ~~L~~e~~~l~k~l~kl~~el~~s~~d~~~~d~F~~~l~~Fl~~a~~~v~~L 1194 (1237)
+++.+++.++...|++.+..|...---.-+...+...|..-+..+.++|+.+
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~ 54 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQL 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888876543322234455555555555555555444
No 391
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=20.12 E-value=7.1e+02 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.0
Q ss_pred ceeEEEeEEeeccCCcCCCCCcceEEEEEec
Q 000884 200 RALTLDCVILRSIPNFDGQGGCRPIFRIYGQ 230 (1237)
Q Consensus 200 ~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1237)
..+++.-+.-+.++..+..+.|.||++|+..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~ 43 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLI 43 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEE
Confidence 5666766667778877766789999999974
No 392
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=20.10 E-value=1.2e+02 Score=38.21 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=12.9
Q ss_pred HHHHHHHhhccCCCCCHHHHHH
Q 000884 962 PELMRSVLALEDSAIDADQVEN 983 (1237)
Q Consensus 962 ~el~~aIl~lD~~~L~~e~l~~ 983 (1237)
..++..|.++|...|+.++-..
T Consensus 33 ~~~l~~L~~id~~~Ls~~~~~~ 54 (549)
T PF05960_consen 33 RKLLKRLEAIDRASLSPEQQID 54 (549)
T ss_dssp HHHHHHHHTS-GSC-SHHHHHH
T ss_pred HHHHHHHhCcCcccCCHHHHHH
Confidence 4566667777777777765443
No 393
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.01 E-value=1.1e+03 Score=30.06 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000884 1032 FKIQFHTQVSDLRSSLNVVN 1051 (1237)
Q Consensus 1032 fk~~f~~~v~dl~~~l~~v~ 1051 (1237)
.+.++..++.+|+..|+.+.
T Consensus 198 lr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 198 LRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555554444
Done!