Query 000886
Match_columns 1237
No_of_seqs 473 out of 1553
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 15:50:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000886.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_657-660//hhsearch_pdb/000886hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 361.9 7.0 138 973-1115 4-142 (143)
2 2k2d_A Ring finger and CHY zin 1.0 1 1 181.8 1.3 72 1155-1226 1-72 (79)
3 2p0n_A Hypothetical protein NM 1.0 1 1 117.1 16.2 146 290-443 14-168 (172)
4 3cax_A Uncharacterized protein 1.0 1 1 113.8 16.2 149 291-443 8-166 (369)
5 2p0n_A Hypothetical protein NM 1.0 1 1 112.1 15.6 149 41-194 15-168 (172)
6 3cax_A Uncharacterized protein 1.0 1 1 98.8 16.3 149 641-818 8-162 (369)
7 1v87_A Deltex protein 2; ring- 1.0 1 1 91.6 4.4 55 1111-1165 22-95 (114)
8 2l0b_A E3 ubiquitin-protein li 1.0 1 1 90.8 3.4 53 1111-1164 37-89 (91)
9 1x4j_A Ring finger protein 38; 1.0 1 1 89.8 3.1 54 1111-1165 20-73 (75)
10 2ep4_A Ring finger protein 24; 1.0 1 1 88.9 4.2 57 1109-1166 10-66 (74)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=361.89 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89988323112666864421133221352287436911116658887761234611136556444588987876678976
Q 000886 973 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1052 (1237)
Q Consensus 973 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~v~C~~C~~~q~~~~~C~~~~C~~~~ 1052 (1237)
|-.|+|+|++++++||+||+|+|+|+||||++|||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCC--C-CCC
T ss_conf 8888643434576788366888617888789814614420334556643110504442356760654673887--7-862
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 531842444577799950247999854458988844202578653223444-322123467778
Q 000886 1053 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1115 (1237)
Q Consensus 1053 ~~~Y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~~HC~~C~~C~~~~l-~~H~C~e~~~~~ 1115 (1237)
|++|||+||||||++|+||||++|||||||+ ++|||||++||+|++++| ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CEEEEECEEECCCCCCCEECCCCCCCEECCC--CCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0106711004355778604278887324468--7576788918823635657674657667668
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=181.80 Aligned_cols=72 Identities=36% Similarity=0.613 Sum_probs=69.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 989896637703677747999860399966640687166478899888874110035888888655311124
Q 000886 1155 CPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE 1226 (1237)
Q Consensus 1155 CPiCrksi~dm~~~~~~lD~~i~~~pmP~ey~~~~~~I~CnDC~~~s~~~fH~lg~kC~~CgSYNT~~~~~~ 1226 (1237)
||+|+|+++||+.+|++||++|+.+|||++|++++++|+||||++++.++|||+||||+.|+||||++++-.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGR 72 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCC
T ss_conf 983541699999999999999985789989959793789999998752774030256869989485766788
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=117.11 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------
Q ss_conf 875478899999999999999999999641269-91109999999999999977653111244003246666--------
Q 000886 290 MSCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-------- 360 (1237)
Q Consensus 290 ~~~pid~l~~~HkALRrEL~~L~~~a~~~~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~-------- 360 (1237)
...+|+.|...|+.+|+.+..|...+..+...+ +...+..+...+.+|...+..||..|++++||+|..+.
T Consensus 14 ~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~ 93 (172)
T 2p0n_A 14 FAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVD 93 (172)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 62199999999999999999999999999875998399999999999998779877740788851999863851448999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 42884999999999999999988730999870799999999999999999986898999999999820999999999995
Q 000886 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1237)
Q Consensus 361 ~me~EH~~ie~lle~l~~ll~~~~~a~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvlPLl~~~fS~eEq~~L~~~ 440 (1237)
.|..||..+...++.+...+..+........ ....+..+...+..|+.+||+ +||++.+.+|.++|.+|+.+
T Consensus 94 ~l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~-------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~ 165 (172)
T 2p0n_A 94 ELLRQHIGLHDNWAAVSAEFAKLEADNAYVP-------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEI 165 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999999999999999999876997743-------499999999999999999877-77999976999999999999
Q ss_pred HHH
Q ss_conf 730
Q 000886 441 SLC 443 (1237)
Q Consensus 441 ~l~ 443 (1237)
+..
T Consensus 166 ~~~ 168 (172)
T 2p0n_A 166 MAA 168 (172)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 997
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=113.76 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH------
Q ss_conf 754788999999999999999999996412699----1109999999999999977653111244003246666------
Q 000886 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1237)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~~~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1237)
-+|++.|...|++|++.|..|...+.++..... ...+..+...+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998788763125766638999849987892
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 42884999999999999999988730999870799999999999999999986898999999999820999999999995
Q 000886 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1237)
Q Consensus 361 ~me~EH~~ie~lle~l~~ll~~~~~a~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvlPLl~~~fS~eEq~~L~~~ 440 (1237)
.|..||.++..++..+..++..... . + . .+.+..+...+..+...+.+|+.+||+.+||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~-~-~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M-P-W-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-C-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 6777769999999999999845456-6-4-1-568999999999999999999999998899999986899999999826
Q ss_pred HHH
Q ss_conf 730
Q 000886 441 SLC 443 (1237)
Q Consensus 441 ~l~ 443 (1237)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 762
No 5
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=112.07 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH---HHHHHH
Q ss_conf 89737799999999999999999998640379995419999999999999999851045453206587765---568998
Q 000886 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1237)
Q Consensus 41 ~~Pi~~~~~iHkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv---~~v~~~ 117 (1237)
+.||+.+.--|+.+|+.+..|..++..+.....+......+.+-++++...++.||..|++++||+|..+. .+++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 21999999999999999999999999998759983999999999999987798777407888519998638514489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 976444187989999999985202843--79999999999779999785799999986688720899999999997730
Q 000886 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1237)
Q Consensus 118 ~~~EH~~~~~lf~~l~~~l~~~~~~~~--~~~~eLa~~i~~l~~~l~qHl~~EE~qv~PLl~~~~S~~Eqa~L~~~~i~ 194 (1237)
+..||.....+++.|...+..+..+.. ... ..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~~----~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPDE----EAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999987699774349----9999999999999999877-77999976999999999999997
No 6
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=98.84 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 98235899999999997999999822225788-----2239999999999999999-98621000013223232234545
Q 000886 641 SRPIDNIFKFHKAIRKDLEYLDGESGKLNDCN-----ETFLRQFTGRFRLLWGLYR-AHSNAEDDIVFPALESKETLSNV 714 (1237)
Q Consensus 641 ~~PId~i~~~HkAIRkDLe~l~~~~~kL~~~d-----~~~L~~f~~rf~~L~~v~~-~HS~AEDeivfPALe~k~~~~n~ 714 (1237)
-+||+.+..=|.+|++.|..|...+.++.... ...+..+...|.+|.. +. .|..-|++++||.|++. +....
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~-g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERR-GLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTT-TCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998-78876312576663899984-99878
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332115889988988999888665542202467677543364322220246652799999999999999999988667
Q 000886 715 SHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVF 794 (1237)
Q Consensus 715 s~s~~~EH~~ee~lfedi~~~L~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~kL~~~~ksl~~~L~~Hl~ 794 (1237)
...+..+|.++..++..+..++.... . .. ....+..|... ++.+...+.+|+.
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~-------~--~~--------------~~~~~~~~~~~----l~~~~~~l~~Hi~ 138 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKRE-------E--MP--------------WEEFVEKFKAK----AGEVAFALSDMVF 138 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGG-------G--SC--------------HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC-------C--CC--------------HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_conf 92677776999999999999984545-------6--64--------------15689999999----9999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 677856568861099999999999
Q 000886 795 REELELWPLFDRHFSVEEQDKIVG 818 (1237)
Q Consensus 795 ~EE~ElfPL~rk~fS~eeQ~~Lv~ 818 (1237)
.||..|||.+.+.||.++|.+|-.
T Consensus 139 kEe~iLfP~a~~~ls~~dw~~i~~ 162 (369)
T 3cax_A 139 RENNIFYPTLKALLSEGEWKAIKM 162 (369)
T ss_dssp HHHHTHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999889999998689999999982
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=91.57 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCC--------------CCCEECCCCCCCCHHHHHHHH-----HCCCCCCCCCCCCCCH
Q ss_conf 677787854222344677--------------842343888725801299865-----1699998989663770
Q 000886 1111 KGLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1165 (1237)
Q Consensus 1111 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~C~~~w~-----~~~~~CPiCrksi~dm 1165 (1237)
...+..||||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999684078100374443332223455752135229979960499999999703677898699999823777
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=90.76 Aligned_cols=53 Identities=30% Similarity=0.804 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 677787854222344677842343888725801299865169999898966377
Q 000886 1111 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1164 (1237)
Q Consensus 1111 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~d 1164 (1237)
...+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCCCCCHH-HCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6899988436902-1589827962799948999999999769968380940799
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=89.83 Aligned_cols=54 Identities=31% Similarity=0.702 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 6777878542223446778423438887258012998651699998989663770
Q 000886 1111 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1165 (1237)
Q Consensus 1111 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~dm 1165 (1237)
......|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCEECCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6799989388935-27998699878998757999999997499390708807888
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.85 Aligned_cols=57 Identities=25% Similarity=0.658 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 3467778785422234467784234388872580129986516999989896637703
Q 000886 1109 REKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1166 (1237)
Q Consensus 1109 ~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~w~~~~~~CPiCrksi~dm~ 1166 (1237)
.+...+..|+||++. +.....+..+||||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCCCCCCCCC-CCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 268999989577920-179972787089998549999999985996979593416611
Done!