Query 000887
Match_columns 1237
No_of_seqs 514 out of 4697
Neff 10.5
Searched_HMMs 46136
Date Tue Apr 2 00:33:01 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-65 3.8E-70 616.8 34.9 584 14-648 180-788 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-57 6E-62 582.2 51.0 453 10-496 204-683 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.5E-37 9.7E-42 339.4 14.6 260 11-273 17-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-33 2.5E-38 367.0 26.6 229 943-1199 379-608 (968)
5 PLN00113 leucine-rich repeat r 100.0 9.6E-32 2.1E-36 349.2 26.9 107 393-501 86-195 (968)
6 KOG4194 Membrane glycoprotein 99.9 3.9E-24 8.4E-29 229.1 5.7 384 777-1215 78-469 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 1.2E-25 2.6E-30 230.0 -11.1 174 969-1197 363-540 (565)
8 KOG0618 Serine/threonine phosp 99.9 3.1E-24 6.8E-29 243.1 -3.0 110 390-501 35-144 (1081)
9 PLN03210 Resistant to P. syrin 99.9 8.8E-21 1.9E-25 245.1 22.7 341 801-1179 552-910 (1153)
10 KOG0618 Serine/threonine phosp 99.8 2.5E-23 5.5E-28 235.8 -5.0 100 400-501 21-121 (1081)
11 KOG4194 Membrane glycoprotein 99.8 2.5E-21 5.3E-26 207.8 7.6 86 401-488 79-166 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 2.7E-22 6E-27 205.6 -8.6 205 390-641 104-308 (565)
13 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.5E-26 211.3 -5.8 75 960-1036 308-382 (1255)
14 KOG0444 Cytoskeletal regulator 99.7 6.7E-19 1.5E-23 190.2 -2.7 225 395-640 73-301 (1255)
15 PRK04841 transcriptional regul 99.5 5.5E-12 1.2E-16 163.9 26.5 277 11-321 30-333 (903)
16 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 4E-17 154.5 14.9 155 968-1173 302-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.3 7.1E-12 1.5E-16 149.5 14.8 80 400-489 201-280 (788)
18 COG2909 MalT ATP-dependent tra 99.3 5.8E-12 1.3E-16 144.5 13.1 283 9-322 33-340 (894)
19 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.3E-17 159.0 6.0 290 399-743 544-856 (889)
20 KOG4237 Extracellular matrix p 99.3 2.3E-13 5E-18 140.8 -4.3 284 922-1213 69-374 (498)
21 KOG0617 Ras suppressor protein 99.2 2.8E-13 6E-18 123.1 -4.9 101 398-499 31-132 (264)
22 KOG0617 Ras suppressor protein 99.2 7.9E-13 1.7E-17 120.2 -2.2 90 414-506 25-114 (264)
23 KOG4237 Extracellular matrix p 99.2 1.2E-12 2.6E-17 135.5 -2.4 113 387-501 78-195 (498)
24 PRK15370 E3 ubiquitin-protein 99.2 8.4E-11 1.8E-15 141.7 11.6 83 400-490 178-260 (754)
25 PRK15370 E3 ubiquitin-protein 99.1 1.6E-10 3.4E-15 139.5 10.0 92 400-501 199-290 (754)
26 KOG4341 F-box protein containi 99.1 2.4E-12 5.2E-17 134.7 -6.0 90 777-870 138-231 (483)
27 TIGR03015 pepcterm_ATPase puta 99.1 9.4E-09 2E-13 112.2 21.1 182 13-198 43-242 (269)
28 KOG4341 F-box protein containi 99.0 6.1E-12 1.3E-16 131.7 -6.0 276 807-1122 138-438 (483)
29 PF05729 NACHT: NACHT domain 99.0 1.8E-09 3.8E-14 108.4 11.3 143 14-161 1-163 (166)
30 COG3903 Predicted ATPase [Gene 99.0 1.2E-09 2.6E-14 116.3 9.8 294 11-322 12-316 (414)
31 PRK00411 cdc6 cell division co 98.9 6.4E-08 1.4E-12 112.1 22.6 273 11-298 53-357 (394)
32 TIGR02928 orc1/cdc6 family rep 98.8 1.1E-06 2.4E-11 100.8 24.0 276 11-299 38-350 (365)
33 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 99.5 3.5 101 398-502 17-121 (175)
34 PRK00080 ruvB Holliday junctio 98.7 6E-07 1.3E-11 100.2 17.8 252 11-298 49-309 (328)
35 PRK06893 DNA replication initi 98.6 2.7E-07 5.8E-12 96.6 12.8 155 14-198 40-207 (229)
36 TIGR00635 ruvB Holliday juncti 98.6 9E-07 2E-11 98.4 17.8 243 11-298 28-288 (305)
37 PF14580 LRR_9: Leucine-rich r 98.6 4.1E-08 8.9E-13 95.6 5.6 105 398-505 40-151 (175)
38 PF01637 Arch_ATPase: Archaeal 98.6 2.3E-07 5E-12 99.3 10.8 177 13-193 20-233 (234)
39 PF13401 AAA_22: AAA domain; P 98.6 1.5E-07 3.2E-12 89.8 8.2 117 12-130 3-125 (131)
40 KOG0532 Leucine-rich repeat (L 98.6 3.9E-09 8.5E-14 115.2 -3.2 98 399-499 97-194 (722)
41 cd00116 LRR_RI Leucine-rich re 98.5 1.7E-08 3.8E-13 113.8 0.3 108 393-501 16-144 (319)
42 COG4886 Leucine-rich repeat (L 98.5 6.6E-08 1.4E-12 112.2 4.8 105 397-503 113-218 (394)
43 cd00116 LRR_RI Leucine-rich re 98.5 2.7E-08 5.9E-13 112.2 1.1 109 391-501 42-172 (319)
44 PTZ00112 origin recognition co 98.5 9.3E-06 2E-10 95.3 20.9 151 13-163 781-951 (1164)
45 KOG3207 Beta-tubulin folding c 98.4 2.9E-08 6.2E-13 105.4 -0.7 181 942-1146 119-310 (505)
46 KOG0532 Leucine-rich repeat (L 98.4 1.1E-08 2.4E-13 111.8 -4.0 103 398-503 73-175 (722)
47 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.8E-06 3.9E-11 91.4 12.5 156 12-197 37-204 (226)
48 COG2256 MGS1 ATPase related to 98.4 6.8E-06 1.5E-10 87.5 16.1 205 10-239 45-267 (436)
49 PRK15386 type III secretion pr 98.4 7.4E-07 1.6E-11 97.5 9.2 56 990-1050 50-105 (426)
50 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 82.1 9.3 120 13-153 2-127 (128)
51 PF13855 LRR_8: Leucine rich r 98.4 3.8E-07 8.2E-12 72.6 4.5 57 400-456 1-59 (61)
52 KOG1259 Nischarin, modulator o 98.3 1.1E-07 2.4E-12 95.3 0.4 106 395-504 279-384 (490)
53 PRK09087 hypothetical protein; 98.3 8.1E-06 1.8E-10 84.7 13.7 145 14-198 45-199 (226)
54 PRK08727 hypothetical protein; 98.3 8.7E-06 1.9E-10 85.5 13.4 148 14-191 42-201 (233)
55 PF00308 Bac_DnaA: Bacterial d 98.3 1E-05 2.2E-10 83.8 13.6 165 13-197 34-211 (219)
56 PRK08084 DNA replication initi 98.2 1.4E-05 3E-10 84.1 13.3 156 13-198 45-213 (235)
57 KOG1259 Nischarin, modulator o 98.2 2.8E-07 6.1E-12 92.5 0.3 110 390-503 297-408 (490)
58 TIGR00678 holB DNA polymerase 98.2 3.2E-05 6.9E-10 78.8 15.2 147 13-189 14-186 (188)
59 PRK08903 DnaA regulatory inact 98.2 1.3E-05 2.8E-10 84.6 12.7 153 12-198 41-203 (227)
60 KOG3207 Beta-tubulin folding c 98.2 3.2E-07 6.9E-12 97.6 0.4 91 578-670 218-311 (505)
61 COG3899 Predicted ATPase [Gene 98.2 5.9E-05 1.3E-09 93.9 20.0 211 90-320 153-386 (849)
62 PLN03025 replication factor C 98.2 2.5E-05 5.4E-10 86.8 14.8 162 11-190 32-196 (319)
63 PRK15386 type III secretion pr 98.2 3.6E-06 7.9E-11 92.2 7.7 70 919-1000 51-120 (426)
64 COG4886 Leucine-rich repeat (L 98.2 1E-06 2.2E-11 102.3 3.4 103 396-500 135-238 (394)
65 PF13855 LRR_8: Leucine rich r 98.2 2.1E-06 4.5E-11 68.3 4.1 57 423-480 1-59 (61)
66 PRK14087 dnaA chromosomal repl 98.1 4.4E-05 9.5E-10 88.0 16.3 169 14-198 142-323 (450)
67 PRK14961 DNA polymerase III su 98.1 7.1E-05 1.5E-09 84.5 17.7 97 90-190 118-216 (363)
68 PLN03150 hypothetical protein; 98.1 2.9E-06 6.3E-11 102.8 6.8 93 401-493 419-513 (623)
69 COG1474 CDC6 Cdc6-related prot 98.1 0.00023 5E-09 79.2 20.8 172 15-186 44-229 (366)
70 PRK14960 DNA polymerase III su 98.1 0.00027 5.9E-09 82.2 21.5 154 13-191 37-216 (702)
71 PRK06645 DNA polymerase III su 98.1 8.4E-05 1.8E-09 86.0 17.5 175 13-191 43-226 (507)
72 PRK13342 recombination factor 98.1 4.5E-05 9.9E-10 87.9 15.4 158 11-195 34-197 (413)
73 PRK05642 DNA replication initi 98.1 3.1E-05 6.7E-10 81.3 12.7 156 13-198 45-212 (234)
74 PRK12402 replication factor C 98.1 8.4E-05 1.8E-09 84.3 16.8 178 12-193 35-225 (337)
75 KOG2120 SCF ubiquitin ligase, 98.1 8.4E-08 1.8E-12 96.3 -6.6 132 967-1120 209-348 (419)
76 PRK04195 replication factor C 98.1 0.0003 6.6E-09 82.9 21.8 222 13-272 39-271 (482)
77 KOG2120 SCF ubiquitin ligase, 98.1 4.6E-08 9.9E-13 98.2 -8.5 163 988-1172 206-373 (419)
78 PRK14963 DNA polymerase III su 98.1 0.0001 2.2E-09 85.8 17.4 171 13-191 36-214 (504)
79 PRK07003 DNA polymerase III su 98.1 0.00023 5.1E-09 83.7 19.6 175 13-194 38-221 (830)
80 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 59.9 3.6 38 401-438 2-39 (44)
81 PRK14962 DNA polymerase III su 98.0 0.00022 4.8E-09 82.3 18.4 164 13-197 36-222 (472)
82 PF05621 TniB: Bacterial TniB 98.0 0.00015 3.2E-09 76.1 15.2 182 10-191 58-258 (302)
83 cd01128 rho_factor Transcripti 98.0 9.6E-06 2.1E-10 84.8 6.5 88 14-101 17-113 (249)
84 PLN03150 hypothetical protein; 98.0 1.1E-05 2.5E-10 97.7 7.9 97 391-487 433-532 (623)
85 PRK12323 DNA polymerase III su 98.0 0.00012 2.6E-09 84.9 15.5 175 13-191 38-222 (700)
86 PRK14956 DNA polymerase III su 98.0 6.3E-05 1.4E-09 84.9 13.0 171 14-190 41-218 (484)
87 PRK14957 DNA polymerase III su 98.0 0.00061 1.3E-08 79.5 21.5 161 13-195 38-222 (546)
88 PRK14949 DNA polymerase III su 98.0 0.00013 2.8E-09 87.7 15.7 100 89-192 117-218 (944)
89 PRK00440 rfc replication facto 97.9 0.00027 5.8E-09 79.5 17.4 160 12-191 37-200 (319)
90 PRK09376 rho transcription ter 97.9 2.6E-05 5.7E-10 84.5 8.4 87 14-101 170-266 (416)
91 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 58.3 3.6 41 423-464 1-41 (44)
92 PRK14088 dnaA chromosomal repl 97.9 0.00017 3.6E-09 83.3 15.2 163 13-194 130-305 (440)
93 PRK14964 DNA polymerase III su 97.9 0.00027 5.9E-09 81.0 16.7 157 13-190 35-213 (491)
94 cd00009 AAA The AAA+ (ATPases 97.9 8E-05 1.7E-09 73.0 10.3 108 12-132 18-131 (151)
95 PRK06620 hypothetical protein; 97.9 0.00015 3.2E-09 74.6 12.3 137 14-194 45-189 (214)
96 KOG2028 ATPase related to the 97.8 0.00017 3.6E-09 75.3 12.0 158 10-188 159-330 (554)
97 PRK08691 DNA polymerase III su 97.8 0.00069 1.5E-08 79.8 18.6 173 13-192 38-218 (709)
98 TIGR00362 DnaA chromosomal rep 97.8 0.00024 5.2E-09 82.1 14.5 162 13-194 136-310 (405)
99 TIGR02397 dnaX_nterm DNA polym 97.8 0.00068 1.5E-08 77.4 18.1 161 13-194 36-218 (355)
100 PF05496 RuvB_N: Holliday junc 97.8 0.00025 5.5E-09 70.7 12.1 158 11-199 48-226 (233)
101 KOG0531 Protein phosphatase 1, 97.8 5.2E-06 1.1E-10 96.2 0.0 102 396-501 91-193 (414)
102 PRK14958 DNA polymerase III su 97.8 0.0004 8.6E-09 81.2 15.3 158 13-191 38-217 (509)
103 PRK07940 DNA polymerase III su 97.8 0.00057 1.2E-08 77.0 15.8 150 13-191 36-210 (394)
104 PRK05564 DNA polymerase III su 97.8 0.00057 1.2E-08 75.8 15.7 155 12-191 25-187 (313)
105 PRK14086 dnaA chromosomal repl 97.7 0.00044 9.6E-09 80.6 14.8 161 14-194 315-488 (617)
106 PRK00149 dnaA chromosomal repl 97.7 0.0004 8.7E-09 81.3 14.8 162 13-194 148-322 (450)
107 PRK05896 DNA polymerase III su 97.7 0.00082 1.8E-08 78.4 16.9 172 13-195 38-222 (605)
108 PRK13341 recombination factor 97.7 0.00032 6.9E-09 85.1 14.1 154 11-190 50-213 (725)
109 PRK09112 DNA polymerase III su 97.7 0.00044 9.5E-09 76.7 14.1 170 13-192 45-238 (351)
110 TIGR00767 rho transcription te 97.7 0.00014 3E-09 79.6 9.6 88 14-101 169-265 (415)
111 COG3267 ExeA Type II secretory 97.7 0.001 2.2E-08 67.0 14.7 183 10-197 48-248 (269)
112 PRK12422 chromosomal replicati 97.7 0.00076 1.6E-08 77.6 15.8 155 13-188 141-307 (445)
113 PRK14969 DNA polymerase III su 97.7 0.00062 1.3E-08 80.3 15.4 156 14-194 39-221 (527)
114 PRK14959 DNA polymerase III su 97.7 0.00088 1.9E-08 78.6 16.1 105 90-198 118-225 (624)
115 KOG0989 Replication factor C, 97.7 0.00027 5.9E-09 72.6 10.4 162 11-187 55-223 (346)
116 PF14516 AAA_35: AAA-like doma 97.7 0.0038 8.2E-08 69.5 20.5 179 14-201 32-246 (331)
117 KOG4579 Leucine-rich repeat (L 97.7 4.8E-06 1E-10 74.0 -1.8 95 403-499 30-128 (177)
118 PRK14951 DNA polymerase III su 97.7 0.0012 2.6E-08 78.2 17.2 176 13-192 38-223 (618)
119 PRK07994 DNA polymerase III su 97.7 0.00083 1.8E-08 79.7 15.7 172 14-192 39-218 (647)
120 PRK14955 DNA polymerase III su 97.7 0.00028 6.2E-09 80.7 11.7 174 14-191 39-225 (397)
121 KOG4579 Leucine-rich repeat (L 97.6 9E-06 1.9E-10 72.3 -0.5 92 396-489 49-141 (177)
122 TIGR01242 26Sp45 26S proteasom 97.6 0.00099 2.1E-08 75.7 15.8 151 13-188 156-328 (364)
123 PRK09111 DNA polymerase III su 97.6 0.0011 2.4E-08 78.7 16.5 173 13-193 46-232 (598)
124 PRK07471 DNA polymerase III su 97.6 0.0011 2.4E-08 74.0 15.7 96 90-193 140-237 (365)
125 PRK08451 DNA polymerase III su 97.6 0.0017 3.7E-08 75.3 17.6 156 13-193 36-217 (535)
126 CHL00181 cbbX CbbX; Provisiona 97.6 0.0013 2.8E-08 71.1 15.5 134 14-163 60-211 (287)
127 PRK05707 DNA polymerase III su 97.6 0.0014 3.1E-08 72.0 16.1 153 13-191 22-200 (328)
128 TIGR02881 spore_V_K stage V sp 97.6 0.00056 1.2E-08 73.6 12.5 137 11-163 40-193 (261)
129 PRK14953 DNA polymerase III su 97.6 0.0024 5.2E-08 74.3 18.4 100 90-193 118-219 (486)
130 PRK07133 DNA polymerase III su 97.6 0.0019 4.2E-08 77.1 17.7 173 13-194 40-220 (725)
131 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.2E-10 93.8 -1.6 103 397-503 69-171 (414)
132 TIGR02903 spore_lon_C ATP-depe 97.6 0.0012 2.5E-08 79.6 15.7 111 81-195 282-396 (615)
133 KOG2982 Uncharacterized conser 97.5 3.4E-05 7.4E-10 78.1 2.0 83 398-480 69-156 (418)
134 COG0593 DnaA ATPase involved i 97.5 0.00086 1.9E-08 74.2 12.8 154 12-186 112-278 (408)
135 PRK14954 DNA polymerase III su 97.5 0.001 2.2E-08 79.1 13.8 172 14-189 39-223 (620)
136 PRK14970 DNA polymerase III su 97.5 0.0022 4.9E-08 73.2 16.4 157 13-190 39-205 (367)
137 PRK14950 DNA polymerase III su 97.5 0.0031 6.6E-08 76.0 17.8 173 13-194 38-221 (585)
138 smart00382 AAA ATPases associa 97.5 0.00054 1.2E-08 66.5 9.7 87 14-103 3-90 (148)
139 TIGR02880 cbbX_cfxQ probable R 97.5 0.0018 3.8E-08 70.2 14.2 133 15-163 60-210 (284)
140 PRK06305 DNA polymerase III su 97.5 0.0031 6.8E-08 72.9 16.6 101 90-194 120-223 (451)
141 PRK14952 DNA polymerase III su 97.4 0.0033 7.2E-08 74.3 16.8 177 13-196 35-222 (584)
142 PF00004 AAA: ATPase family as 97.4 0.00035 7.7E-09 66.5 7.3 21 16-36 1-21 (132)
143 KOG1909 Ran GTPase-activating 97.4 1.8E-05 3.9E-10 82.4 -1.8 90 392-481 22-131 (382)
144 PRK14948 DNA polymerase III su 97.4 0.0015 3.2E-08 78.4 13.8 171 14-192 39-220 (620)
145 PRK06647 DNA polymerase III su 97.4 0.0049 1.1E-07 73.1 17.8 173 13-192 38-218 (563)
146 KOG0991 Replication factor C, 97.4 0.0011 2.5E-08 64.8 10.0 83 10-107 45-129 (333)
147 PF13191 AAA_16: AAA ATPase do 97.4 0.00045 9.8E-09 70.5 7.9 44 9-53 20-63 (185)
148 PRK14971 DNA polymerase III su 97.4 0.0033 7.2E-08 75.4 16.1 97 90-190 120-218 (614)
149 PRK03992 proteasome-activating 97.3 0.0021 4.5E-08 73.2 13.1 151 12-187 164-336 (389)
150 PRK07764 DNA polymerase III su 97.3 0.0048 1E-07 76.1 16.8 171 14-191 38-218 (824)
151 PHA02544 44 clamp loader, smal 97.3 0.0033 7.2E-08 70.3 14.4 127 12-159 42-171 (316)
152 PRK08116 hypothetical protein; 97.3 0.00078 1.7E-08 72.0 8.8 104 14-131 115-221 (268)
153 PTZ00202 tuzin; Provisional 97.3 0.019 4.1E-07 63.3 19.0 140 12-161 285-434 (550)
154 PRK14965 DNA polymerase III su 97.3 0.018 3.9E-07 69.1 20.5 101 90-194 118-221 (576)
155 KOG1859 Leucine-rich repeat pr 97.2 2.2E-05 4.8E-10 89.0 -5.0 79 398-480 185-264 (1096)
156 PRK08181 transposase; Validate 97.1 0.0012 2.5E-08 70.2 8.0 101 14-131 107-209 (269)
157 PRK07399 DNA polymerase III su 97.1 0.011 2.4E-07 64.8 15.7 173 13-193 26-220 (314)
158 KOG1859 Leucine-rich repeat pr 97.1 3.3E-05 7E-10 87.7 -4.2 118 399-521 163-281 (1096)
159 PF01695 IstB_IS21: IstB-like 97.1 0.0007 1.5E-08 67.3 5.6 101 14-131 48-150 (178)
160 PRK05563 DNA polymerase III su 97.1 0.015 3.3E-07 69.3 17.4 97 90-190 118-216 (559)
161 KOG1947 Leucine rich repeat pr 97.0 5.4E-05 1.2E-09 91.2 -3.7 111 919-1029 187-308 (482)
162 PTZ00454 26S protease regulato 97.0 0.0072 1.6E-07 68.4 13.4 153 12-188 178-351 (398)
163 PRK06526 transposase; Provisio 97.0 0.0011 2.5E-08 69.9 6.5 101 14-131 99-201 (254)
164 KOG1909 Ran GTPase-activating 97.0 4.4E-05 9.5E-10 79.6 -4.2 90 417-506 24-132 (382)
165 PRK08769 DNA polymerase III su 97.0 0.02 4.4E-07 62.4 15.8 158 13-192 26-206 (319)
166 KOG3665 ZYG-1-like serine/thre 96.9 0.00042 9.2E-09 83.7 2.8 109 363-481 144-261 (699)
167 KOG1969 DNA replication checkp 96.9 0.0031 6.7E-08 72.7 9.3 80 8-104 321-400 (877)
168 COG2255 RuvB Holliday junction 96.9 0.023 5E-07 58.2 14.2 71 124-201 155-227 (332)
169 PF00448 SRP54: SRP54-type pro 96.9 0.0013 2.8E-08 66.5 5.5 88 13-101 1-93 (196)
170 PRK08118 topology modulation p 96.9 0.002 4.3E-08 63.5 6.6 34 14-47 2-37 (167)
171 PRK08058 DNA polymerase III su 96.9 0.015 3.2E-07 64.8 14.2 144 13-159 28-180 (329)
172 PF04665 Pox_A32: Poxvirus A32 96.9 0.0036 7.9E-08 64.3 8.6 36 14-50 14-49 (241)
173 KOG2543 Origin recognition com 96.9 0.015 3.3E-07 62.1 13.2 142 12-159 29-191 (438)
174 CHL00176 ftsH cell division pr 96.9 0.019 4.1E-07 69.1 15.7 156 13-192 216-393 (638)
175 PRK11331 5-methylcytosine-spec 96.8 0.003 6.6E-08 70.7 7.9 88 14-105 195-286 (459)
176 TIGR03689 pup_AAA proteasome A 96.8 0.014 3.1E-07 67.5 13.5 140 13-162 216-379 (512)
177 PRK06921 hypothetical protein; 96.8 0.0047 1E-07 65.9 9.0 38 13-50 117-154 (266)
178 KOG0741 AAA+-type ATPase [Post 96.8 0.025 5.4E-07 62.8 14.3 150 10-184 535-704 (744)
179 PF05673 DUF815: Protein of un 96.8 0.023 4.9E-07 58.0 13.2 24 14-37 53-76 (249)
180 TIGR02639 ClpA ATP-dependent C 96.8 0.0088 1.9E-07 74.5 12.7 134 14-161 204-358 (731)
181 PRK10536 hypothetical protein; 96.8 0.0074 1.6E-07 62.3 9.9 116 14-133 75-215 (262)
182 PTZ00361 26 proteosome regulat 96.8 0.0064 1.4E-07 69.3 10.5 132 12-162 216-368 (438)
183 PRK06871 DNA polymerase III su 96.8 0.041 8.9E-07 60.1 16.1 160 13-189 24-198 (325)
184 KOG1947 Leucine rich repeat pr 96.8 8E-05 1.7E-09 89.7 -5.3 14 854-867 268-281 (482)
185 PRK12377 putative replication 96.8 0.0028 6.1E-08 66.4 6.8 101 14-130 102-205 (248)
186 PRK07261 topology modulation p 96.8 0.0045 9.8E-08 61.4 7.9 64 15-101 2-67 (171)
187 PRK06090 DNA polymerase III su 96.7 0.043 9.3E-07 59.8 15.8 166 12-193 24-200 (319)
188 PRK04296 thymidine kinase; Pro 96.7 0.0043 9.3E-08 62.8 7.7 114 14-133 3-118 (190)
189 PRK12608 transcription termina 96.7 0.0077 1.7E-07 65.9 9.8 87 14-100 134-229 (380)
190 PRK04132 replication factor C 96.7 0.04 8.6E-07 67.7 16.7 153 19-190 570-727 (846)
191 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0089 1.9E-07 74.9 11.6 159 15-188 210-390 (852)
192 COG1222 RPT1 ATP-dependent 26S 96.7 0.04 8.7E-07 58.6 14.3 154 12-190 184-359 (406)
193 PF02562 PhoH: PhoH-like prote 96.7 0.0034 7.3E-08 63.1 6.3 116 14-133 20-158 (205)
194 PRK09183 transposase/IS protei 96.7 0.005 1.1E-07 65.6 7.9 101 14-131 103-206 (259)
195 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.0063 1.4E-07 58.3 7.5 118 14-133 3-140 (159)
196 PRK06964 DNA polymerase III su 96.6 0.052 1.1E-06 59.8 15.3 90 90-191 131-222 (342)
197 TIGR02640 gas_vesic_GvpN gas v 96.6 0.025 5.5E-07 60.7 12.7 41 15-59 23-63 (262)
198 KOG2004 Mitochondrial ATP-depe 96.6 0.0089 1.9E-07 68.9 9.4 138 13-161 438-596 (906)
199 PRK07993 DNA polymerase III su 96.6 0.054 1.2E-06 59.9 15.5 161 12-189 23-199 (334)
200 COG5238 RNA1 Ran GTPase-activa 96.6 0.00078 1.7E-08 67.7 1.0 84 398-481 28-131 (388)
201 PRK08699 DNA polymerase III su 96.6 0.024 5.1E-07 62.5 12.5 147 13-160 21-184 (325)
202 PRK11889 flhF flagellar biosyn 96.5 0.016 3.4E-07 63.6 10.6 91 11-102 239-331 (436)
203 CHL00095 clpC Clp protease ATP 96.5 0.012 2.5E-07 74.4 11.3 132 15-160 202-353 (821)
204 PRK08939 primosomal protein Dn 96.5 0.008 1.7E-07 65.5 8.4 101 13-130 156-260 (306)
205 COG1875 NYN ribonuclease and A 96.5 0.0079 1.7E-07 63.7 7.7 120 10-132 242-389 (436)
206 TIGR02237 recomb_radB DNA repa 96.4 0.0099 2.2E-07 61.8 8.4 47 13-61 12-58 (209)
207 TIGR01241 FtsH_fam ATP-depende 96.4 0.031 6.7E-07 66.4 13.6 158 13-194 88-267 (495)
208 COG1484 DnaC DNA replication p 96.4 0.0049 1.1E-07 65.2 6.0 80 13-108 105-184 (254)
209 KOG3665 ZYG-1-like serine/thre 96.4 0.0011 2.5E-08 80.1 1.4 132 1060-1196 120-261 (699)
210 COG1373 Predicted ATPase (AAA+ 96.4 0.03 6.5E-07 63.8 12.6 119 15-157 39-163 (398)
211 KOG1644 U2-associated snRNP A' 96.4 0.004 8.6E-08 60.2 4.4 99 400-501 42-147 (233)
212 KOG0735 AAA+-type ATPase [Post 96.4 0.029 6.3E-07 64.7 11.8 161 14-195 432-617 (952)
213 TIGR02639 ClpA ATP-dependent C 96.4 0.088 1.9E-06 65.7 17.5 93 13-115 484-577 (731)
214 PRK07952 DNA replication prote 96.4 0.0086 1.9E-07 62.6 7.3 103 13-130 99-204 (244)
215 KOG2123 Uncharacterized conser 96.3 0.00026 5.5E-09 71.3 -3.9 101 398-501 17-124 (388)
216 PRK11034 clpA ATP-dependent Cl 96.3 0.022 4.7E-07 69.9 11.6 133 15-161 209-362 (758)
217 PF07728 AAA_5: AAA domain (dy 96.3 0.0021 4.5E-08 61.8 2.4 83 16-110 2-84 (139)
218 CHL00195 ycf46 Ycf46; Provisio 96.3 0.031 6.8E-07 64.9 12.2 155 12-188 258-429 (489)
219 KOG1644 U2-associated snRNP A' 96.3 0.0046 1E-07 59.8 4.5 86 394-480 58-150 (233)
220 COG0466 Lon ATP-dependent Lon 96.3 0.017 3.7E-07 67.1 9.7 137 14-161 351-508 (782)
221 KOG2227 Pre-initiation complex 96.3 0.13 2.7E-06 57.0 15.7 152 11-162 173-339 (529)
222 PF13177 DNA_pol3_delta2: DNA 96.3 0.052 1.1E-06 53.3 12.0 117 13-148 19-161 (162)
223 TIGR00602 rad24 checkpoint pro 96.3 0.019 4.1E-07 68.4 10.5 24 13-36 110-133 (637)
224 PRK09361 radB DNA repair and r 96.3 0.013 2.8E-07 61.7 8.3 44 13-58 23-66 (225)
225 cd01393 recA_like RecA is a b 96.3 0.018 3.9E-07 60.7 9.4 87 13-100 19-123 (226)
226 KOG2982 Uncharacterized conser 96.3 0.0014 3.1E-08 66.8 0.9 65 392-456 89-156 (418)
227 PRK06835 DNA replication prote 96.3 0.013 2.9E-07 64.2 8.5 102 14-130 184-288 (329)
228 PRK14974 cell division protein 96.3 0.024 5.3E-07 62.2 10.4 91 11-102 138-233 (336)
229 TIGR03499 FlhF flagellar biosy 96.3 0.018 4E-07 62.3 9.4 87 12-100 193-281 (282)
230 cd01120 RecA-like_NTPases RecA 96.3 0.015 3.3E-07 57.7 8.3 39 15-54 1-39 (165)
231 KOG2739 Leucine-rich acidic nu 96.3 0.0027 5.8E-08 64.4 2.6 107 395-505 38-154 (260)
232 KOG2035 Replication factor C, 96.2 0.023 4.9E-07 57.9 8.9 190 10-215 31-259 (351)
233 cd03214 ABC_Iron-Siderophores_ 96.2 0.049 1.1E-06 54.8 11.5 121 14-136 26-163 (180)
234 PF13207 AAA_17: AAA domain; P 96.2 0.004 8.7E-08 58.1 3.3 22 15-36 1-22 (121)
235 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.02 4.3E-07 60.9 9.1 47 13-59 19-70 (235)
236 cd03228 ABCC_MRP_Like The MRP 96.2 0.035 7.6E-07 55.4 10.2 117 14-135 29-159 (171)
237 PRK00771 signal recognition pa 96.1 0.027 5.8E-07 64.3 10.3 90 11-102 93-186 (437)
238 TIGR02012 tigrfam_recA protein 96.1 0.011 2.3E-07 64.2 6.8 83 13-101 55-143 (321)
239 cd03247 ABCC_cytochrome_bd The 96.1 0.065 1.4E-06 53.8 12.1 117 14-135 29-161 (178)
240 cd00983 recA RecA is a bacter 96.1 0.011 2.4E-07 64.1 6.8 82 13-100 55-142 (325)
241 PHA00729 NTP-binding motif con 96.1 0.011 2.4E-07 60.1 6.2 26 11-36 15-40 (226)
242 PRK05541 adenylylsulfate kinas 96.1 0.021 4.5E-07 57.4 8.2 37 12-49 6-42 (176)
243 TIGR03346 chaperone_ClpB ATP-d 96.1 0.06 1.3E-06 68.3 13.9 134 14-161 195-349 (852)
244 PRK10865 protein disaggregatio 96.0 0.098 2.1E-06 66.1 15.5 110 14-130 599-720 (857)
245 cd01394 radB RadB. The archaea 96.0 0.02 4.4E-07 59.9 8.2 41 13-54 19-59 (218)
246 COG0542 clpA ATP-binding subun 96.0 0.015 3.2E-07 69.8 7.7 98 13-117 521-619 (786)
247 TIGR00708 cobA cob(I)alamin ad 96.0 0.036 7.9E-07 53.8 8.9 121 13-133 5-142 (173)
248 PRK12726 flagellar biosynthesi 96.0 0.052 1.1E-06 59.5 11.0 91 11-102 204-296 (407)
249 TIGR03346 chaperone_ClpB ATP-d 96.0 0.094 2E-06 66.5 15.2 111 13-130 595-717 (852)
250 PRK14722 flhF flagellar biosyn 96.0 0.021 4.5E-07 63.4 8.2 88 13-102 137-226 (374)
251 cd03238 ABC_UvrA The excision 96.0 0.051 1.1E-06 53.9 10.0 120 14-145 22-161 (176)
252 KOG0744 AAA+-type ATPase [Post 95.9 0.028 6E-07 58.6 8.1 78 14-101 178-260 (423)
253 PRK05703 flhF flagellar biosyn 95.9 0.046 1E-06 62.7 11.0 87 13-101 221-309 (424)
254 PRK06067 flagellar accessory p 95.9 0.029 6.3E-07 59.4 8.9 86 12-101 24-130 (234)
255 cd00544 CobU Adenosylcobinamid 95.9 0.015 3.2E-07 57.1 6.1 79 15-100 1-82 (169)
256 PRK09354 recA recombinase A; P 95.9 0.018 3.9E-07 63.0 7.1 83 13-101 60-148 (349)
257 cd03115 SRP The signal recogni 95.9 0.052 1.1E-06 54.3 9.9 86 15-101 2-92 (173)
258 KOG0733 Nuclear AAA ATPase (VC 95.8 0.057 1.2E-06 61.3 10.6 151 13-187 223-395 (802)
259 cd03223 ABCD_peroxisomal_ALDP 95.8 0.084 1.8E-06 52.2 11.0 114 14-134 28-151 (166)
260 cd03216 ABC_Carb_Monos_I This 95.8 0.036 7.7E-07 54.7 8.3 117 14-136 27-147 (163)
261 TIGR01243 CDC48 AAA family ATP 95.8 0.12 2.6E-06 64.8 14.8 152 13-188 487-657 (733)
262 COG0470 HolB ATPase involved i 95.8 0.037 8.1E-07 62.3 9.5 118 14-147 25-167 (325)
263 PRK05800 cobU adenosylcobinami 95.8 0.013 2.9E-07 57.7 5.0 80 15-100 3-85 (170)
264 PF07693 KAP_NTPase: KAP famil 95.8 0.2 4.4E-06 56.3 15.4 27 11-37 18-44 (325)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.08 1.7E-06 50.9 10.3 105 14-136 27-132 (144)
266 cd01122 GP4d_helicase GP4d_hel 95.7 0.084 1.8E-06 57.5 11.8 50 14-65 31-80 (271)
267 KOG2123 Uncharacterized conser 95.7 0.0017 3.8E-08 65.5 -1.3 98 421-522 17-123 (388)
268 PRK12723 flagellar biosynthesi 95.7 0.063 1.4E-06 60.3 10.6 90 11-102 172-265 (388)
269 COG1618 Predicted nucleotide k 95.7 0.01 2.3E-07 55.2 3.6 35 14-48 6-41 (179)
270 PRK10865 protein disaggregatio 95.7 0.1 2.2E-06 66.0 13.5 132 15-161 201-354 (857)
271 COG0468 RecA RecA/RadA recombi 95.7 0.052 1.1E-06 57.5 9.3 89 11-100 58-150 (279)
272 TIGR03345 VI_ClpV1 type VI sec 95.7 0.031 6.8E-07 70.1 9.0 110 13-130 596-718 (852)
273 PF00560 LRR_1: Leucine Rich R 95.7 0.0056 1.2E-07 36.5 1.2 18 425-442 2-19 (22)
274 PRK12724 flagellar biosynthesi 95.7 0.047 1E-06 60.9 9.2 85 12-100 222-308 (432)
275 COG2884 FtsE Predicted ATPase 95.7 0.1 2.2E-06 50.4 10.0 66 73-138 137-204 (223)
276 PRK10867 signal recognition pa 95.6 0.067 1.4E-06 61.0 10.6 91 11-101 98-193 (433)
277 PRK08233 hypothetical protein; 95.6 0.03 6.5E-07 56.7 7.3 25 13-37 3-27 (182)
278 COG1126 GlnQ ABC-type polar am 95.6 0.093 2E-06 51.9 9.9 123 14-138 29-203 (240)
279 PF00485 PRK: Phosphoribulokin 95.6 0.045 9.8E-07 55.9 8.4 80 15-95 1-87 (194)
280 cd01133 F1-ATPase_beta F1 ATP 95.6 0.069 1.5E-06 56.3 9.6 86 14-100 70-172 (274)
281 KOG0733 Nuclear AAA ATPase (VC 95.6 0.17 3.7E-06 57.7 13.0 131 13-162 545-693 (802)
282 COG4608 AppF ABC-type oligopep 95.5 0.075 1.6E-06 55.0 9.5 123 14-138 40-177 (268)
283 PF08433 KTI12: Chromatin asso 95.5 0.025 5.3E-07 60.3 6.2 34 14-48 2-35 (270)
284 cd03246 ABCC_Protease_Secretio 95.5 0.069 1.5E-06 53.4 9.1 115 14-134 29-159 (173)
285 TIGR00064 ftsY signal recognit 95.5 0.067 1.4E-06 57.4 9.5 92 10-102 69-165 (272)
286 cd01124 KaiC KaiC is a circadi 95.4 0.046 1E-06 55.6 7.9 38 15-53 1-38 (187)
287 COG0396 sufC Cysteine desulfur 95.4 0.13 2.8E-06 51.5 10.3 66 75-140 146-213 (251)
288 TIGR00959 ffh signal recogniti 95.4 0.096 2.1E-06 59.7 10.9 91 11-102 97-193 (428)
289 PF08423 Rad51: Rad51; InterP 95.4 0.074 1.6E-06 56.6 9.5 53 14-67 39-96 (256)
290 COG1124 DppF ABC-type dipeptid 95.4 0.098 2.1E-06 52.9 9.6 64 75-138 143-209 (252)
291 PF07724 AAA_2: AAA domain (Cd 95.4 0.015 3.3E-07 57.3 3.9 43 13-55 3-45 (171)
292 PF10443 RNA12: RNA12 protein; 95.4 0.53 1.1E-05 52.5 15.9 112 92-204 149-288 (431)
293 cd02027 APSK Adenosine 5'-phos 95.4 0.089 1.9E-06 50.9 9.1 23 15-37 1-23 (149)
294 COG0563 Adk Adenylate kinase a 95.4 0.029 6.2E-07 55.7 5.7 23 15-37 2-24 (178)
295 cd01125 repA Hexameric Replica 95.3 0.14 2.9E-06 54.4 11.3 22 15-36 3-24 (239)
296 KOG1514 Origin recognition com 95.3 0.55 1.2E-05 54.9 16.3 176 12-193 421-620 (767)
297 PLN00020 ribulose bisphosphate 95.3 0.041 8.9E-07 59.6 6.9 26 11-36 146-171 (413)
298 PF01583 APS_kinase: Adenylyls 95.2 0.0085 1.8E-07 57.2 1.5 36 13-49 2-37 (156)
299 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.24 5.2E-06 51.4 12.0 60 75-136 141-204 (254)
300 KOG0728 26S proteasome regulat 95.2 0.34 7.4E-06 48.5 12.4 132 11-161 179-331 (404)
301 COG1102 Cmk Cytidylate kinase 95.2 0.04 8.7E-07 51.5 5.6 44 15-70 2-45 (179)
302 cd03222 ABC_RNaseL_inhibitor T 95.2 0.12 2.5E-06 51.4 9.4 118 14-146 26-146 (177)
303 COG2812 DnaX DNA polymerase II 95.2 0.079 1.7E-06 61.0 9.2 166 17-189 42-215 (515)
304 TIGR00763 lon ATP-dependent pr 95.1 0.15 3.2E-06 64.1 12.5 137 14-161 348-505 (775)
305 PF00154 RecA: recA bacterial 95.1 0.033 7.2E-07 60.2 5.7 81 14-100 54-140 (322)
306 PF13604 AAA_30: AAA domain; P 95.1 0.036 7.8E-07 56.4 5.7 110 14-134 19-134 (196)
307 CHL00095 clpC Clp protease ATP 95.1 0.085 1.8E-06 66.7 10.2 110 14-130 540-661 (821)
308 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.6E-07 35.0 1.3 22 401-422 1-22 (22)
309 cd03230 ABC_DR_subfamily_A Thi 95.0 0.073 1.6E-06 53.2 7.7 118 14-136 27-160 (173)
310 PRK05986 cob(I)alamin adenolsy 95.0 0.093 2E-06 51.9 8.0 122 12-134 21-161 (191)
311 COG1419 FlhF Flagellar GTP-bin 95.0 0.092 2E-06 57.8 8.7 88 13-102 203-292 (407)
312 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.04 8.6E-07 56.9 5.7 23 13-35 29-51 (213)
313 COG1136 SalX ABC-type antimicr 95.0 0.25 5.3E-06 50.4 11.1 64 74-137 143-209 (226)
314 KOG2228 Origin recognition com 94.9 0.25 5.3E-06 52.3 11.1 147 13-161 49-219 (408)
315 PTZ00301 uridine kinase; Provi 94.9 0.048 1E-06 55.8 6.1 24 13-36 3-26 (210)
316 cd02025 PanK Pantothenate kina 94.9 0.1 2.2E-06 54.1 8.5 23 15-37 1-23 (220)
317 PRK00889 adenylylsulfate kinas 94.9 0.053 1.1E-06 54.4 6.2 25 13-37 4-28 (175)
318 PRK13695 putative NTPase; Prov 94.9 0.034 7.4E-07 55.6 4.8 23 15-37 2-24 (174)
319 KOG2739 Leucine-rich acidic nu 94.8 0.019 4.1E-07 58.4 2.8 93 396-490 61-162 (260)
320 cd01131 PilT Pilus retraction 94.8 0.054 1.2E-06 55.3 6.2 109 14-132 2-110 (198)
321 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.13 2.8E-06 54.4 9.3 40 13-53 21-60 (237)
322 cd03229 ABC_Class3 This class 94.8 0.091 2E-06 52.8 7.8 121 14-136 27-166 (178)
323 TIGR01425 SRP54_euk signal rec 94.8 0.085 1.9E-06 59.7 8.2 41 11-52 98-138 (429)
324 PHA02244 ATPase-like protein 94.8 0.11 2.5E-06 56.8 8.8 22 15-36 121-142 (383)
325 PF13238 AAA_18: AAA domain; P 94.8 0.021 4.6E-07 53.9 3.0 21 16-36 1-21 (129)
326 cd02019 NK Nucleoside/nucleoti 94.8 0.023 5E-07 46.2 2.8 22 15-36 1-22 (69)
327 PRK12727 flagellar biosynthesi 94.8 0.088 1.9E-06 60.5 8.2 87 13-101 350-438 (559)
328 TIGR01243 CDC48 AAA family ATP 94.8 0.21 4.6E-06 62.6 12.5 154 13-190 212-383 (733)
329 KOG0730 AAA+-type ATPase [Post 94.7 0.29 6.3E-06 56.7 12.1 154 11-188 466-637 (693)
330 COG4181 Predicted ABC-type tra 94.7 0.57 1.2E-05 44.4 11.7 83 55-138 122-214 (228)
331 KOG1532 GTPase XAB1, interacts 94.7 0.14 3.1E-06 52.0 8.5 85 11-95 17-120 (366)
332 PF13245 AAA_19: Part of AAA d 94.7 0.055 1.2E-06 44.8 4.7 26 13-38 10-35 (76)
333 PRK06217 hypothetical protein; 94.7 0.11 2.4E-06 52.4 8.0 24 14-37 2-25 (183)
334 PLN03187 meiotic recombination 94.7 0.16 3.4E-06 56.1 9.6 56 13-69 126-186 (344)
335 COG4088 Predicted nucleotide k 94.7 0.022 4.7E-07 55.3 2.6 24 14-37 2-25 (261)
336 PF10236 DAP3: Mitochondrial r 94.7 0.74 1.6E-05 50.6 14.9 49 142-191 258-306 (309)
337 PRK14721 flhF flagellar biosyn 94.7 0.16 3.5E-06 57.5 9.9 87 12-100 190-278 (420)
338 PLN03186 DNA repair protein RA 94.7 0.13 2.8E-06 56.9 9.0 55 13-68 123-182 (342)
339 cd03232 ABC_PDR_domain2 The pl 94.6 0.2 4.4E-06 51.0 9.8 22 14-35 34-55 (192)
340 TIGR02236 recomb_radA DNA repa 94.6 0.13 2.9E-06 57.0 9.2 54 13-67 95-153 (310)
341 COG1066 Sms Predicted ATP-depe 94.6 0.14 3E-06 55.8 8.6 80 14-101 94-178 (456)
342 PRK05973 replicative DNA helic 94.6 0.11 2.5E-06 53.8 7.8 39 14-53 65-103 (237)
343 PRK10416 signal recognition pa 94.6 0.15 3.3E-06 55.9 9.3 90 11-102 112-207 (318)
344 PLN02924 thymidylate kinase 94.6 0.14 3E-06 53.0 8.4 33 12-44 15-47 (220)
345 TIGR03574 selen_PSTK L-seryl-t 94.6 0.069 1.5E-06 57.1 6.5 23 15-37 1-23 (249)
346 TIGR02238 recomb_DMC1 meiotic 94.6 0.11 2.4E-06 56.9 8.1 55 14-69 97-156 (313)
347 cd03283 ABC_MutS-like MutS-lik 94.6 0.067 1.4E-06 54.6 6.1 22 14-35 26-47 (199)
348 PRK11034 clpA ATP-dependent Cl 94.6 0.11 2.4E-06 64.0 8.9 93 13-115 488-581 (758)
349 TIGR03575 selen_PSTK_euk L-ser 94.5 0.093 2E-06 57.6 7.4 35 15-50 1-36 (340)
350 PF13306 LRR_5: Leucine rich r 94.5 0.15 3.3E-06 48.0 8.2 109 1059-1180 9-119 (129)
351 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.056 1.2E-06 54.7 5.5 22 15-36 1-22 (183)
352 PRK06696 uridine kinase; Valid 94.5 0.033 7.1E-07 58.3 3.8 28 10-37 19-46 (223)
353 COG4619 ABC-type uncharacteriz 94.5 0.37 8E-06 45.5 9.9 21 15-35 31-51 (223)
354 COG3598 RepA RecA-family ATPas 94.5 0.093 2E-06 54.9 6.8 57 15-71 91-157 (402)
355 TIGR00554 panK_bact pantothena 94.5 0.13 2.7E-06 55.4 8.1 80 11-91 60-141 (290)
356 KOG0735 AAA+-type ATPase [Post 94.5 0.78 1.7E-05 53.6 14.6 152 15-190 703-872 (952)
357 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.13 2.8E-06 50.4 7.8 119 14-137 26-146 (157)
358 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.47 1E-05 49.1 12.3 22 14-35 35-56 (207)
359 PRK10787 DNA-binding ATP-depen 94.5 0.22 4.7E-06 62.0 11.3 138 13-161 349-506 (784)
360 PRK05439 pantothenate kinase; 94.5 0.2 4.4E-06 54.2 9.7 83 9-92 82-166 (311)
361 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.17 3.8E-06 54.1 9.1 41 12-53 35-75 (259)
362 PRK07667 uridine kinase; Provi 94.4 0.046 1E-06 55.6 4.5 27 11-37 15-41 (193)
363 TIGR01650 PD_CobS cobaltochela 94.4 0.34 7.4E-06 52.6 11.1 42 14-59 65-106 (327)
364 PRK10733 hflB ATP-dependent me 94.4 0.32 6.9E-06 59.6 12.3 130 14-162 186-336 (644)
365 COG0572 Udk Uridine kinase [Nu 94.3 0.038 8.3E-07 55.4 3.6 26 11-36 6-31 (218)
366 PRK06762 hypothetical protein; 94.3 0.036 7.7E-07 55.1 3.5 24 13-36 2-25 (166)
367 PRK06547 hypothetical protein; 94.3 0.042 9.1E-07 54.3 3.9 26 11-36 13-38 (172)
368 cd01121 Sms Sms (bacterial rad 94.3 0.18 3.8E-06 56.7 9.2 80 14-100 83-167 (372)
369 PRK05480 uridine/cytidine kina 94.3 0.04 8.6E-07 57.2 3.9 26 11-36 4-29 (209)
370 TIGR02902 spore_lonB ATP-depen 94.3 0.25 5.3E-06 58.9 11.0 22 14-35 87-108 (531)
371 KOG0727 26S proteasome regulat 94.3 0.13 2.7E-06 51.5 6.9 26 11-36 187-212 (408)
372 PRK13539 cytochrome c biogenes 94.3 0.28 6E-06 50.7 10.1 65 83-150 137-203 (207)
373 cd03263 ABC_subfamily_A The AB 94.3 0.24 5.2E-06 51.9 9.8 22 14-35 29-50 (220)
374 PRK06002 fliI flagellum-specif 94.3 0.15 3.3E-06 57.8 8.6 85 14-100 166-263 (450)
375 PF03205 MobB: Molybdopterin g 94.3 0.052 1.1E-06 51.5 4.2 39 14-52 1-39 (140)
376 COG1116 TauB ABC-type nitrate/ 94.3 0.23 4.9E-06 50.8 8.9 21 15-35 31-51 (248)
377 PF13671 AAA_33: AAA domain; P 94.3 0.037 8.1E-07 53.4 3.3 22 15-36 1-22 (143)
378 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.27 5.8E-06 50.5 9.8 120 14-136 27-169 (200)
379 PRK06731 flhF flagellar biosyn 94.2 0.25 5.3E-06 52.6 9.6 90 12-102 74-165 (270)
380 TIGR02239 recomb_RAD51 DNA rep 94.2 0.18 3.8E-06 55.5 8.7 55 12-67 95-154 (316)
381 PRK15453 phosphoribulokinase; 94.2 0.27 6E-06 51.7 9.5 79 11-90 3-89 (290)
382 PRK03846 adenylylsulfate kinas 94.2 0.098 2.1E-06 53.6 6.4 27 11-37 22-48 (198)
383 PRK04301 radA DNA repair and r 94.2 0.16 3.6E-06 56.3 8.6 54 13-67 102-160 (317)
384 cd03282 ABC_MSH4_euk MutS4 hom 94.1 0.12 2.5E-06 52.9 6.8 117 14-138 30-158 (204)
385 CHL00206 ycf2 Ycf2; Provisiona 94.1 0.39 8.5E-06 63.0 12.6 25 12-36 1629-1653(2281)
386 PRK12597 F0F1 ATP synthase sub 94.1 0.15 3.3E-06 58.2 8.3 88 14-101 144-247 (461)
387 TIGR02858 spore_III_AA stage I 94.1 0.46 1E-05 50.7 11.4 114 12-134 110-232 (270)
388 cd02021 GntK Gluconate kinase 94.1 0.32 6.9E-06 47.3 9.6 22 15-36 1-22 (150)
389 PF00006 ATP-synt_ab: ATP synt 94.1 0.14 3E-06 52.5 7.2 83 15-100 17-114 (215)
390 COG0464 SpoVK ATPases of the A 94.1 0.52 1.1E-05 56.4 13.3 133 11-162 274-424 (494)
391 COG1428 Deoxynucleoside kinase 94.1 0.039 8.5E-07 54.5 3.0 47 13-63 4-50 (216)
392 cd03244 ABCC_MRP_domain2 Domai 94.1 0.44 9.5E-06 49.9 11.3 23 14-36 31-53 (221)
393 cd03213 ABCG_EPDR ABCG transpo 94.1 0.42 9.1E-06 48.7 10.8 117 14-132 36-172 (194)
394 TIGR00235 udk uridine kinase. 94.1 0.049 1.1E-06 56.3 4.0 26 11-36 4-29 (207)
395 TIGR01313 therm_gnt_kin carboh 94.0 0.19 4.1E-06 49.6 8.0 21 16-36 1-21 (163)
396 PRK07132 DNA polymerase III su 94.0 1.5 3.2E-05 47.7 15.2 156 13-194 18-185 (299)
397 PTZ00035 Rad51 protein; Provis 94.0 0.29 6.2E-06 54.4 10.1 55 13-68 118-177 (337)
398 COG0529 CysC Adenylylsulfate k 94.0 0.098 2.1E-06 49.8 5.3 31 12-42 22-52 (197)
399 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.0 0.3 6.4E-06 51.2 9.8 23 14-36 49-71 (224)
400 PRK14527 adenylate kinase; Pro 94.0 0.11 2.3E-06 53.0 6.2 25 12-36 5-29 (191)
401 COG2842 Uncharacterized ATPase 94.0 0.23 5.1E-06 52.0 8.5 94 15-115 96-189 (297)
402 PRK04328 hypothetical protein; 94.0 0.22 4.8E-06 52.9 8.8 40 13-53 23-62 (249)
403 COG4618 ArpD ABC-type protease 94.0 0.45 9.7E-06 53.5 11.0 21 15-35 364-384 (580)
404 PRK13948 shikimate kinase; Pro 94.0 0.6 1.3E-05 46.6 11.2 26 11-36 8-33 (182)
405 PRK09280 F0F1 ATP synthase sub 94.0 0.21 4.4E-06 57.0 8.8 87 14-100 145-247 (463)
406 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.16 3.4E-06 57.8 7.8 88 14-101 139-242 (449)
407 TIGR03864 PQQ_ABC_ATP ABC tran 94.0 0.29 6.3E-06 51.9 9.7 22 14-35 28-49 (236)
408 PRK09270 nucleoside triphospha 93.9 0.21 4.5E-06 52.5 8.5 28 10-37 30-57 (229)
409 PRK14723 flhF flagellar biosyn 93.9 0.25 5.4E-06 60.0 9.9 87 13-101 185-273 (767)
410 PF13481 AAA_25: AAA domain; P 93.9 0.29 6.2E-06 50.1 9.3 39 15-53 34-81 (193)
411 PTZ00088 adenylate kinase 1; P 93.9 0.061 1.3E-06 55.9 4.2 22 15-36 8-29 (229)
412 COG1223 Predicted ATPase (AAA+ 93.9 0.93 2E-05 46.1 12.0 153 10-187 148-318 (368)
413 COG2274 SunT ABC-type bacterio 93.9 0.21 4.7E-06 60.9 9.4 55 79-133 615-671 (709)
414 cd03269 ABC_putative_ATPase Th 93.9 0.33 7E-06 50.4 9.7 23 14-36 27-49 (210)
415 PRK06995 flhF flagellar biosyn 93.8 0.29 6.2E-06 56.5 9.8 87 13-101 256-344 (484)
416 cd00984 DnaB_C DnaB helicase C 93.8 0.32 7E-06 51.9 9.8 49 14-64 14-62 (242)
417 PF06309 Torsin: Torsin; Inte 93.8 0.19 4.2E-06 45.6 6.6 31 9-39 49-79 (127)
418 TIGR01360 aden_kin_iso1 adenyl 93.8 0.051 1.1E-06 55.4 3.5 25 12-36 2-26 (188)
419 cd03287 ABC_MSH3_euk MutS3 hom 93.8 0.44 9.5E-06 49.3 10.2 111 13-136 31-159 (222)
420 PF06745 KaiC: KaiC; InterPro 93.8 0.14 3E-06 53.9 6.8 84 14-100 20-124 (226)
421 COG4133 CcmA ABC-type transpor 93.8 0.44 9.6E-06 46.2 9.2 33 15-48 30-62 (209)
422 cd01135 V_A-ATPase_B V/A-type 93.8 0.18 3.9E-06 53.1 7.4 88 14-101 70-176 (276)
423 cd03266 ABC_NatA_sodium_export 93.7 0.34 7.3E-06 50.7 9.6 23 14-36 32-54 (218)
424 COG0055 AtpD F0F1-type ATP syn 93.7 0.072 1.6E-06 56.8 4.3 89 14-102 148-252 (468)
425 COG3640 CooC CO dehydrogenase 93.7 0.094 2E-06 52.5 4.9 40 15-55 2-42 (255)
426 PRK04040 adenylate kinase; Pro 93.7 0.055 1.2E-06 54.5 3.5 24 13-36 2-25 (188)
427 TIGR03881 KaiC_arch_4 KaiC dom 93.7 0.23 5E-06 52.4 8.4 40 13-53 20-59 (229)
428 PRK03839 putative kinase; Prov 93.7 0.051 1.1E-06 54.8 3.2 22 15-36 2-23 (180)
429 KOG0473 Leucine-rich repeat pr 93.7 0.0032 6.9E-08 61.9 -5.2 84 396-480 38-121 (326)
430 cd03215 ABC_Carb_Monos_II This 93.7 0.66 1.4E-05 46.8 11.3 23 14-36 27-49 (182)
431 TIGR01039 atpD ATP synthase, F 93.7 0.28 6.1E-06 55.7 9.1 88 14-101 144-247 (461)
432 TIGR03522 GldA_ABC_ATP gliding 93.7 0.48 1E-05 52.2 11.0 23 14-36 29-51 (301)
433 cd03226 ABC_cobalt_CbiO_domain 93.7 0.53 1.1E-05 48.6 10.8 22 14-35 27-48 (205)
434 cd03285 ABC_MSH2_euk MutS2 hom 93.6 0.067 1.5E-06 55.6 4.0 24 12-35 29-52 (222)
435 smart00534 MUTSac ATPase domai 93.6 0.053 1.1E-06 54.8 3.1 21 15-35 1-21 (185)
436 cd03243 ABC_MutS_homologs The 93.6 0.08 1.7E-06 54.5 4.4 22 14-35 30-51 (202)
437 cd03264 ABC_drug_resistance_li 93.6 0.42 9.2E-06 49.6 9.9 21 15-35 27-47 (211)
438 COG5635 Predicted NTPase (NACH 93.6 0.14 3.1E-06 64.8 7.5 135 15-154 224-371 (824)
439 PF00910 RNA_helicase: RNA hel 93.5 0.048 1E-06 49.2 2.4 22 16-37 1-22 (107)
440 cd03240 ABC_Rad50 The catalyti 93.5 0.37 8E-06 49.5 9.2 21 14-34 23-43 (204)
441 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.42 9.2E-06 50.7 9.9 123 14-136 26-181 (246)
442 cd03284 ABC_MutS1 MutS1 homolo 93.5 0.085 1.8E-06 54.6 4.5 22 14-35 31-52 (216)
443 COG0003 ArsA Predicted ATPase 93.5 0.12 2.6E-06 56.3 5.7 49 13-62 2-50 (322)
444 KOG0743 AAA+-type ATPase [Post 93.5 2.6 5.6E-05 47.1 15.7 152 16-201 238-416 (457)
445 TIGR00455 apsK adenylylsulfate 93.5 0.34 7.4E-06 49.0 8.8 26 12-37 17-42 (184)
446 PRK13538 cytochrome c biogenes 93.4 0.55 1.2E-05 48.4 10.4 23 14-36 28-50 (204)
447 TIGR01069 mutS2 MutS2 family p 93.4 0.17 3.6E-06 62.9 7.5 25 12-36 321-345 (771)
448 PRK00625 shikimate kinase; Pro 93.4 0.052 1.1E-06 53.6 2.6 22 15-36 2-23 (173)
449 PRK09544 znuC high-affinity zi 93.4 0.46 1E-05 50.7 10.0 23 14-36 31-53 (251)
450 PRK10875 recD exonuclease V su 93.4 0.29 6.4E-06 58.7 9.3 118 14-134 168-305 (615)
451 PF12775 AAA_7: P-loop contain 93.4 0.042 9.1E-07 58.9 2.0 77 14-101 34-110 (272)
452 COG0488 Uup ATPase components 93.3 0.56 1.2E-05 55.2 11.3 130 15-147 350-511 (530)
453 PRK08533 flagellar accessory p 93.3 0.34 7.4E-06 50.7 8.7 48 13-63 24-71 (230)
454 cd03231 ABC_CcmA_heme_exporter 93.3 0.52 1.1E-05 48.4 10.0 23 14-36 27-49 (201)
455 PRK00409 recombination and DNA 93.3 0.52 1.1E-05 58.8 11.6 167 11-200 325-512 (782)
456 PRK13543 cytochrome c biogenes 93.3 0.66 1.4E-05 48.2 10.8 23 14-36 38-60 (214)
457 KOG0473 Leucine-rich repeat pr 93.3 0.0048 1.1E-07 60.7 -4.7 88 412-501 30-118 (326)
458 cd02024 NRK1 Nicotinamide ribo 93.3 0.058 1.3E-06 53.8 2.7 22 15-36 1-22 (187)
459 PRK09519 recA DNA recombinatio 93.3 0.25 5.4E-06 60.2 8.4 82 13-100 60-147 (790)
460 cd03253 ABCC_ATM1_transporter 93.2 0.7 1.5E-05 49.0 11.2 65 79-145 143-208 (236)
461 cd03254 ABCC_Glucan_exporter_l 93.2 0.71 1.5E-05 48.7 11.1 23 14-36 30-52 (229)
462 PF07726 AAA_3: ATPase family 93.2 0.039 8.4E-07 50.1 1.2 27 16-43 2-28 (131)
463 PF13306 LRR_5: Leucine rich r 93.2 0.18 4E-06 47.4 6.0 102 391-499 3-108 (129)
464 COG4240 Predicted kinase [Gene 93.2 0.29 6.3E-06 48.5 7.1 84 9-92 46-134 (300)
465 PRK10751 molybdopterin-guanine 93.2 0.13 2.9E-06 50.2 5.0 32 11-42 4-35 (173)
466 PRK08972 fliI flagellum-specif 93.2 0.3 6.6E-06 55.2 8.4 84 14-100 163-261 (444)
467 KOG2170 ATPase of the AAA+ sup 93.2 0.32 7E-06 50.7 7.7 28 10-37 107-134 (344)
468 PRK10463 hydrogenase nickel in 93.1 0.16 3.4E-06 54.1 5.8 86 11-101 102-194 (290)
469 cd03300 ABC_PotA_N PotA is an 93.1 0.45 9.7E-06 50.3 9.4 23 14-36 27-49 (232)
470 COG2607 Predicted ATPase (AAA+ 93.1 0.37 7.9E-06 48.5 7.8 94 14-131 86-183 (287)
471 KOG0734 AAA+-type ATPase conta 93.1 0.2 4.4E-06 56.0 6.7 71 13-102 337-407 (752)
472 cd03245 ABCC_bacteriocin_expor 93.1 0.7 1.5E-05 48.4 10.8 23 14-36 31-53 (220)
473 PRK00131 aroK shikimate kinase 93.1 0.074 1.6E-06 53.4 3.3 24 13-36 4-27 (175)
474 KOG0736 Peroxisome assembly fa 93.1 0.97 2.1E-05 53.5 12.3 145 16-179 708-874 (953)
475 KOG0927 Predicted transporter 93.1 0.51 1.1E-05 53.4 9.8 24 14-37 102-125 (614)
476 cd03250 ABCC_MRP_domain1 Domai 93.1 1.1 2.4E-05 46.1 12.1 59 77-135 131-192 (204)
477 PRK00279 adk adenylate kinase; 93.1 0.17 3.6E-06 52.8 5.9 22 15-36 2-23 (215)
478 PF03796 DnaB_C: DnaB-like hel 93.1 0.35 7.5E-06 52.1 8.6 52 14-67 20-71 (259)
479 PRK13531 regulatory ATPase Rav 93.1 0.67 1.4E-05 53.1 10.9 23 14-36 40-62 (498)
480 cd03251 ABCC_MsbA MsbA is an e 93.0 0.74 1.6E-05 48.7 11.0 23 14-36 29-51 (234)
481 cd00227 CPT Chloramphenicol (C 93.0 0.074 1.6E-06 53.3 3.1 23 14-36 3-25 (175)
482 KOG0739 AAA+-type ATPase [Post 93.0 0.98 2.1E-05 46.8 10.8 70 13-102 166-236 (439)
483 cd03218 ABC_YhbG The ABC trans 93.0 0.52 1.1E-05 49.8 9.7 22 14-35 27-48 (232)
484 cd03252 ABCC_Hemolysin The ABC 93.0 1.3 2.9E-05 46.9 12.8 22 14-35 29-50 (237)
485 CHL00060 atpB ATP synthase CF1 93.0 0.3 6.5E-06 55.9 8.0 88 14-101 162-272 (494)
486 PF13504 LRR_7: Leucine rich r 92.9 0.066 1.4E-06 29.5 1.4 14 425-438 3-16 (17)
487 TIGR00416 sms DNA repair prote 92.9 0.39 8.4E-06 55.8 9.2 80 14-100 95-179 (454)
488 PRK15177 Vi polysaccharide exp 92.9 0.72 1.6E-05 47.8 10.4 23 14-36 14-36 (213)
489 cd01132 F1_ATPase_alpha F1 ATP 92.9 0.16 3.4E-06 53.5 5.4 84 14-100 70-170 (274)
490 PRK11823 DNA repair protein Ra 92.9 0.33 7.1E-06 56.4 8.6 80 14-100 81-165 (446)
491 COG0488 Uup ATPase components 92.9 0.62 1.3E-05 54.9 10.8 68 77-146 157-224 (530)
492 cd03233 ABC_PDR_domain1 The pl 92.8 0.78 1.7E-05 47.1 10.4 22 14-35 34-55 (202)
493 cd03289 ABCC_CFTR2 The CFTR su 92.8 0.84 1.8E-05 49.3 11.0 22 14-35 31-52 (275)
494 COG1936 Predicted nucleotide k 92.8 0.088 1.9E-06 50.1 3.0 20 15-34 2-21 (180)
495 COG2019 AdkA Archaeal adenylat 92.8 0.1 2.2E-06 49.1 3.3 24 13-36 4-27 (189)
496 COG1703 ArgK Putative periplas 92.8 0.062 1.3E-06 56.0 2.1 51 8-58 46-97 (323)
497 cd02028 UMPK_like Uridine mono 92.8 0.098 2.1E-06 52.4 3.6 23 15-37 1-23 (179)
498 PF03969 AFG1_ATPase: AFG1-lik 92.8 0.35 7.6E-06 54.1 8.2 108 11-133 60-169 (362)
499 PRK12339 2-phosphoglycerate ki 92.7 0.1 2.2E-06 52.9 3.6 24 13-36 3-26 (197)
500 TIGR02322 phosphon_PhnN phosph 92.7 0.089 1.9E-06 53.0 3.3 23 14-36 2-24 (179)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-65 Score=616.76 Aligned_cols=584 Identities=31% Similarity=0.494 Sum_probs=456.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc--cccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC--ccCHHHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK--LTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCK--LEDLNSVQLELKETVF 89 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~--~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 89 (1237)
.+|+|+||||+||||||++++++. ++.+||.++|+.++..++...++.+|+..++..... ....++.+..+.+.|+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 899999999999999999999976 689999999999999999999999999999875443 2334788889999999
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHh-hcCCCeEeCCCCChhhhHHHHHHHhcCCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT-MGSGKNYELKLLSDDDCWSVFVAHAFEGRDAG 168 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 168 (1237)
.+|++||+||||+. .+|+.+..+++....|+||++|||+..++.. +++...++++.|+++|||+||.+.++.....
T Consensus 260 ~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~- 336 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG- 336 (889)
T ss_pred cCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-
Confidence 99999999999998 5699999999999899999999999999988 7777899999999999999999999765332
Q ss_pred CCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCHHHHHHHHhhcccccCC-----CCChhHHHHHHhhcChHHHHHHH
Q 000887 169 THGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQD-----KTEIPSVLKLSYHHLPSHLKRCF 243 (1237)
Q Consensus 169 ~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~i~~~l~~s~~~L~~~~~~~~ 243 (1237)
..+.++++|++++++|+|+|||++++|+.|+.++...+|+++.+...+...+ ...+..++.+||+.|+++.|.||
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF 416 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF 416 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence 2344899999999999999999999999999999999999999875444222 46788999999999998899999
Q ss_pred hhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccccC--CCCCcchhhhHHHHHHhhhcc
Q 000887 244 AYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSS--NTESKYVMHDLVHDLAQWASG 321 (1237)
Q Consensus 244 ~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~~h~lv~~~~~~~~~ 321 (1237)
+|||+||+|+.|+.+.++.+|+||||+.+..+...+++.+++++.+|++++|++..+ ....++.|||+||++|.|+++
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 999999999999999999999999999998788899999999999999999999765 356789999999999999999
Q ss_pred -----ceEEEecCc--cccccccCcccceeEEEEeeccCCCCCcccccccccccccccccccccccccCCCCCCcchhhh
Q 000887 322 -----ETCFRLDDQ--FSVDRQSNVFEKVRHFSYLRSYDCDGMDKFKVLDKVVNLRTFLPIFFKQWRIYPPNISPMVLSD 394 (1237)
Q Consensus 322 -----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~ 394 (1237)
++...+... ....+....+..+|+++++.+..+. ...-.+.+++++|....... -...+...
T Consensus 497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~----~~~~~~~~~L~tLll~~n~~-------~l~~is~~ 565 (889)
T KOG4658|consen 497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH----IAGSSENPKLRTLLLQRNSD-------WLLEISGE 565 (889)
T ss_pred cccccccceEEECCcCccccccccchhheeEEEEeccchhh----ccCCCCCCccceEEEeecch-------hhhhcCHH
Confidence 454444432 2223344556788999999876322 22223455799998775431 13466778
Q ss_pred hcCCCCCccEEEccccc-cccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhccccccc
Q 000887 395 LLPQCKKLRVLSLGSYC-ITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLH 473 (1237)
Q Consensus 395 ~~~~~~~Lr~L~L~~~~-i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 473 (1237)
+|..++.||||||++|. +.++|+++++|-+||||+|+++.|..+|..+++|++|.+||+..+.....+|..+..|.+||
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 89999999999999876 78999999999999999999999999999999999999999999977777777667799999
Q ss_pred EEeccCCCccccCcccccccccccccceeeeccCCCcCcccccchHhcccceeecCccCCCChHHHHHHhhcCCCCCCee
Q 000887 474 YLNIEGASALRELPLGMKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEGLTDL 553 (1237)
Q Consensus 474 ~L~l~~~~~l~~ip~~~~~L~~L~~L~~~~~~~~~~~~i~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 553 (1237)
+|.+.... ...-...++.+.+|++|..+.....+...+..+..+..|+.. .+.+
T Consensus 646 ~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~-------------------------~~~l 699 (889)
T KOG4658|consen 646 VLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL-------------------------LQSL 699 (889)
T ss_pred EEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH-------------------------hHhh
Confidence 99998763 111122355556666665444332222112222222222210 0000
Q ss_pred EeeeCCCCCCCCcchHHHHhhhhcCCCCCCccEEEEeecCCCCCCC-CCCC---CC-CCCccEEEEccCCCCCcCCCCCC
Q 000887 554 KLDWRPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRFPS-WVGD---PS-FSNVAVLILKNCRRSTSLPSLGQ 628 (1237)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~-~~~~---~~-~~~L~~L~L~~~~~~~~l~~l~~ 628 (1237)
.+.+ .........+..+.+|+.|.+.++.+.+... |... .. |+++.++.+.+|.....+.+..-
T Consensus 700 ~~~~-----------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 700 SIEG-----------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhcc-----------cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 0000 0011122335567788888887776654321 2111 12 56777778888877777777777
Q ss_pred ccccceeEecCCCCceeecc
Q 000887 629 LCSLKDLTIVGMSELKSIGS 648 (1237)
Q Consensus 629 l~~L~~L~l~~~~~l~~i~~ 648 (1237)
.|+|+.|++..|..++.+.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cCcccEEEEecccccccCCC
Confidence 89999999999888777643
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-57 Score=582.16 Aligned_cols=453 Identities=23% Similarity=0.292 Sum_probs=292.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEE---cCC-----------cC-HHHHHHHHHHHhhccCC-C
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV---SDD-----------FD-VLRISKAILDSIKRSSC-K 73 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~---~~~-----------~~-~~~~~~~i~~~l~~~~~-~ 73 (1237)
++++++|+|+||||+||||||+++|+ .....|++.+|+.. ... .. ...++.+++.++..... .
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~-~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~ 282 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFS-RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK 282 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHH-HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc
Confidence 45789999999999999999999988 46678888887742 110 00 12344455554433221 1
Q ss_pred ccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCeEeCCCCChhhh
Q 000887 74 LEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELKLLSDDDC 153 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~ea 153 (1237)
... ...+++.++++|+|||+||||+. .+++.+.....+.++|++||||||++.++...+..++++++.++++||
T Consensus 283 ~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 283 IYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELA 356 (1153)
T ss_pred cCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHH
Confidence 111 13567778899999999999764 677777766666789999999999999987766778999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCHHHHHHHHhhcccccCCCCChhHHHHHHhh
Q 000887 154 WSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQDKTEIPSVLKLSYH 233 (1237)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~ 233 (1237)
++||.+.||+... ++++..+++++|+++|+|+||||+++|++|+++ +..+|++++++..... +..+.++|++||+
T Consensus 357 ~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd 431 (1153)
T PLN03210 357 LEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL--DGKIEKTLRVSYD 431 (1153)
T ss_pred HHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc--cHHHHHHHHHhhh
Confidence 9999999986532 345678899999999999999999999999986 5789999998865433 3579999999999
Q ss_pred cChH-HHHHHHhhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccccCCCCCcchhhhHH
Q 000887 234 HLPS-HLKRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSSNTESKYVMHDLV 312 (1237)
Q Consensus 234 ~L~~-~~~~~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~h~lv 312 (1237)
.|++ .+|.+|+++|+|+.+..++ .+..|.+.+.... ...++.|++++|++.. .++|.|||++
T Consensus 432 ~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~---~~~~~MHdLl 494 (1153)
T PLN03210 432 GLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR---EDIVEMHSLL 494 (1153)
T ss_pred ccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc---CCeEEhhhHH
Confidence 9986 5999999999999887653 3556666543321 2238899999999864 3579999999
Q ss_pred HHHHhhhccceEE-------EecCc--cccccccCcccceeEEEEeeccCCCCCcccccccccccccccccccccccccC
Q 000887 313 HDLAQWASGETCF-------RLDDQ--FSVDRQSNVFEKVRHFSYLRSYDCDGMDKFKVLDKVVNLRTFLPIFFKQWRIY 383 (1237)
Q Consensus 313 ~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~ 383 (1237)
|++++++++++.- .+... ......+.....++++++.............++.+|.+|+.+....... . .
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~-~-~ 572 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW-D-Q 572 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccc-c-c
Confidence 9999999876531 11100 0011123344556666554322111111223344555555554321110 0 0
Q ss_pred CCCCCcchhhhhcCCC-CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccC
Q 000887 384 PPNISPMVLSDLLPQC-KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKL 462 (1237)
Q Consensus 384 ~~~~~~~~~~~~~~~~-~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 462 (1237)
..+....++.. |..+ .+||.|.+.++.+..+|..| .+.+|+.|++++|.+..+|..+..+++|++|+|++|..+..+
T Consensus 573 ~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 573 KKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 00001111222 2222 34555555555555555544 345555555555555555555555555555555555445555
Q ss_pred ChhhcccccccEEeccCCCccccCcccccccccc
Q 000887 463 PSRIGNLVNLHYLNIEGASALRELPLGMKELKCL 496 (1237)
Q Consensus 463 p~~i~~L~~L~~L~l~~~~~l~~ip~~~~~L~~L 496 (1237)
|. ++.+++|++|++++|..+..+|..++++++|
T Consensus 651 p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 651 PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred Cc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 53 5555555555555554444444444333333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.5e-37 Score=339.41 Aligned_cols=260 Identities=36% Similarity=0.638 Sum_probs=208.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC---CccCHHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC---KLEDLNSVQLELKE 86 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 86 (1237)
++.++|+|+||||+|||+||.+++++. .+..|+.++|+.++...+..+++..++.+++.... ...+.++....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 778999999999999999999999865 78899999999999998889999999999987743 45678889999999
Q ss_pred HhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcC-CCeEeCCCCChhhhHHHHHHHhcCCC
Q 000887 87 TVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGS-GKNYELKLLSDDDCWSVFVAHAFEGR 165 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~ 165 (1237)
.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++++|+++||++||.+.++...
T Consensus 97 ~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp HHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred hhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999765 5777777777777789999999999988766554 57899999999999999999987554
Q ss_pred CCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCHHHHHHHHhhcccccC----CCCChhHHHHHHhhcChHHHHH
Q 000887 166 DAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQ----DKTEIPSVLKLSYHHLPSHLKR 241 (1237)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~~~~~l~~~~~~~~----~~~~i~~~l~~s~~~L~~~~~~ 241 (1237)
....+..++.+++|+++|+|+||||+++|++++.+....+|.++++....... ....+..++.+||+.|+++.|+
T Consensus 175 -~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 253 (287)
T PF00931_consen 175 -SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRR 253 (287)
T ss_dssp -----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHH
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHH
Confidence 22334456789999999999999999999999765567889988876444432 2467999999999999999999
Q ss_pred HHhhhccCCCCcccChHHHHHHHHHcCCCccC
Q 000887 242 CFAYCAVLPKDYEFKEKELVLLWIAEGLVQQS 273 (1237)
Q Consensus 242 ~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~ 273 (1237)
||.+||+||+++.|+.+.++++|+++|++...
T Consensus 254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 254 CFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred HHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=367.02 Aligned_cols=229 Identities=14% Similarity=0.087 Sum_probs=159.9
Q ss_pred ccceeeeeeecCCCccccCcCCCCCCcccEEEEcCCCCccccccccCCcccccEEeeccccccccccccccCCCCCceee
Q 000887 943 PVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIR 1022 (1237)
Q Consensus 943 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 1022 (1237)
+++|+.|++.+|.....++.....+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 34555556655555455555555667777888877777667777777888888888888766666666667778888888
Q ss_pred eccCCCcccCCCCCCCCcchhhhhhccccccccCCCCCCCcccEEeccCCCCccccCCC-CCCCCcCceEecCCCCcccc
Q 000887 1023 IVRCHNLVSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE-GLSTNLTDLEISGDNMYKPL 1101 (1237)
Q Consensus 1023 l~~c~~l~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~ 1101 (1237)
+++|.....+|... ..++|+.|++++|.....+|.. ..+++|+.|++++|.....+
T Consensus 459 L~~n~~~~~~p~~~-----------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 459 LARNKFFGGLPDSF-----------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred CcCceeeeecCccc-----------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 88876555555432 3457777777777544444443 34677888888887776666
Q ss_pred cccccCCCCCCceEEEcCCCCceeccCCCCccccCCCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCCCcccCCCC
Q 000887 1102 VKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPEA 1181 (1237)
Q Consensus 1102 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 1181 (1237)
|. .+..+++|+.|+|++|.....+|. .+..+++|++|++++|.....+| ..+.++++|++|++++|+....+|..
T Consensus 516 p~-~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 516 PD-ELSSCKKLVSLDLSHNQLSGQIPA---SFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred Ch-HHcCccCCCEEECCCCcccccCCh---hHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCc
Confidence 65 477788888888888765545554 23456788888888865544666 56788889999999998777788877
Q ss_pred CCCCcccEeeecCCCCcc
Q 000887 1182 GFPSSLLSLEIQRCPLLE 1199 (1237)
Q Consensus 1182 ~~~~sL~~L~i~~cp~l~ 1199 (1237)
+.+.++....+.++|.+|
T Consensus 591 ~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 591 GAFLAINASAVAGNIDLC 608 (968)
T ss_pred chhcccChhhhcCCcccc
Confidence 666666667777888775
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-32 Score=349.17 Aligned_cols=107 Identities=27% Similarity=0.415 Sum_probs=72.7
Q ss_pred hhhcCCCCCccEEEccccccc-cccccc-cCCCCCCeEEccCCCcc-ccchhhcccCCccEEEcCccccCccCChhhccc
Q 000887 393 SDLLPQCKKLRVLSLGSYCIT-EVPISI-GCLKQLRYLNFSRSEIQ-CLPDAICSLFNLEILILRNCWCLLKLPSRIGNL 469 (1237)
Q Consensus 393 ~~~~~~~~~Lr~L~L~~~~i~-~lp~~~-~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 469 (1237)
+..|..+++|++|+|++|.+. .+|..+ ..+++||+|+|++|.+. .+|. +.+++|++|+|++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 445667777777777777775 566554 37777777777777765 3343 457777777777774445677777777
Q ss_pred ccccEEeccCCCccccCcccccccccccccce
Q 000887 470 VNLHYLNIEGASALRELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 470 ~~L~~L~l~~~~~l~~ip~~~~~L~~L~~L~~ 501 (1237)
++|++|++++|.....+|..++++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 77777777777444566766777777777755
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.9e-24 Score=229.06 Aligned_cols=384 Identities=17% Similarity=0.205 Sum_probs=287.5
Q ss_pred cceeEEEEecCCCccccccccccccccCCCCccceeEecCCCCceecCCCCC-CCCccEEEecCCcchhhhhhhccccCC
Q 000887 777 QKVEQLMIVGCEGFVNEICLEKPLQGLQRLTCLKDLLIGNCPTVVSLPKACF-LPNLSEITIQDCNALASLTDGMIYNNA 855 (1237)
Q Consensus 777 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~ 855 (1237)
+..+.|++++..- . ..-+..+..+|+|+++++.+ +.++.+|..+. ..+|+.|.+.+|. +.++.......++
T Consensus 78 ~~t~~LdlsnNkl-~-----~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKL-S-----HIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALP 149 (873)
T ss_pred cceeeeecccccc-c-----cCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHHHhHh
Confidence 4677788887542 1 22355778899999999988 55999998777 4559999999964 7777766677789
Q ss_pred ccceeeccCCCCcccccccCCC--CCccEEEEecCCCccccccccccccCCCCccccccCCCCCcccceeEEEEecCCCc
Q 000887 856 RLEVLRIKRCDSLTSISREHLP--SSLQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSL 933 (1237)
Q Consensus 856 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 933 (1237)
.|++|+++. +.+..++...+| .++++|+++++.--+ .....+..+.+|..|.++.. .+
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~------------------l~~~~F~~lnsL~tlkLsrN-ri 209 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITT------------------LETGHFDSLNSLLTLKLSRN-RI 209 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccc------------------cccccccccchheeeecccC-cc
Confidence 999999987 467777777777 579999998763221 11234455667888888874 34
Q ss_pred ccccCC-CCCccceeeeeeecCCCccccCcCCCCCCcccEEEEcCCCCccccccccCCcccccEEeecccccccccc-cc
Q 000887 934 TCLWSG-GRLPVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLP-KG 1011 (1237)
Q Consensus 934 ~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~ 1011 (1237)
+.+|.. +..+++|+.|++..+..-..-...+.++++|+.|.+..|...+--...|+.+.++++|+|..+ .+.... .+
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~ 288 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW 288 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccc
Confidence 444443 455778888888775432222445667788888888887666666677888888888888884 444443 36
Q ss_pred ccCCCCCceeeeccCCCcccCCCCCCCCcchhhhhhccccccccCCCCCCCcccEEeccCCCCccccCCCCC--CCCcCc
Q 000887 1012 LSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEEGL--STNLTD 1089 (1237)
Q Consensus 1012 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~ 1089 (1237)
+.++++|+.|++++ +.+..+....- ..+++|++|+++.+ .++.++++.+ +..|++
T Consensus 289 lfgLt~L~~L~lS~-NaI~rih~d~W---------------------sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSY-NAIQRIHIDSW---------------------SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEE 345 (873)
T ss_pred ccccchhhhhccch-hhhheeecchh---------------------hhcccceeEecccc-ccccCChhHHHHHHHhhh
Confidence 77888888888887 45555533211 36889999999998 5788888744 889999
Q ss_pred eEecCCCCcccccccccCCCCCCceEEEcCCCCceeccCCCCccccCCCcCeeeecCCCCccccCcccCCCCCCCCeeee
Q 000887 1090 LEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSV 1169 (1237)
Q Consensus 1090 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l 1169 (1237)
|.++.|. ++.+....|..+.+|++|+++.|.---.+.+...+|..+++|+.|++.+ |+++.|++..|.++++|+.|++
T Consensus 346 LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 346 LNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecC
Confidence 9999965 4555555788999999999999754444555556777889999999999 8999999999999999999999
Q ss_pred cCCCCcccCCCCCC-CCcccEeeecCCCCcccccccCCccccccccC
Q 000887 1170 FSCPNFTSFPEAGF-PSSLLSLEIQRCPLLEKCKMRKGQEWPKIAHI 1215 (1237)
Q Consensus 1170 ~~c~~l~~l~~~~~-~~sL~~L~i~~cp~l~~c~~~~~~~~~~~~~i 1215 (1237)
.+ +-+.++-...| +..|++|.+..-..+|.|+..|...|.+=..+
T Consensus 424 ~~-NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l 469 (873)
T KOG4194|consen 424 GD-NAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKL 469 (873)
T ss_pred CC-CcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhccc
Confidence 88 46777665555 56999999999999999999999999765333
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-25 Score=230.02 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=91.3
Q ss_pred cccEEEEcCCCCccccccccCCccc---ccEEeeccccccccccccccCCCCCceeeeccCCCcccCCCCCCCCcchhhh
Q 000887 969 EVEELTIYGCSNLESIAERFHDDAC---LRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVL 1045 (1237)
Q Consensus 969 ~L~~L~l~~c~~~~~~~~~~~~l~~---L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~ 1045 (1237)
+.+.|++++ ..+..+|...+...+ ....+++. +.+.++|..+..+..+.+.-+...+.+..+|...
T Consensus 363 ~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l--------- 431 (565)
T KOG0472|consen 363 TTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLEL--------- 431 (565)
T ss_pred hhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHH---------
Confidence 344444444 334444443333322 45556665 4555566555554444444443433333332211
Q ss_pred hhccccccccCCCCCCCcccEEeccCCCCccccCCCCCCCCcCceEecCCCCcccccccccCCCCCCceEEEcCCCCcee
Q 000887 1046 IEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEEGLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVS 1125 (1237)
Q Consensus 1046 l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 1125 (1237)
..+++|..|+++++. +..+|. .++.+..|+.|+|+.+ .+..
T Consensus 432 -------------~~l~kLt~L~L~NN~-Ln~LP~------------------------e~~~lv~Lq~LnlS~N-rFr~ 472 (565)
T KOG0472|consen 432 -------------SQLQKLTFLDLSNNL-LNDLPE------------------------EMGSLVRLQTLNLSFN-RFRM 472 (565)
T ss_pred -------------Hhhhcceeeecccch-hhhcch------------------------hhhhhhhhheeccccc-cccc
Confidence 245555555555553 444444 3455556666666664 4444
Q ss_pred ccCCCCccccCCCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCCCcccCCCC-CCCCcccEeeecCCCC
Q 000887 1126 FPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPEA-GFPSSLLSLEIQRCPL 1197 (1237)
Q Consensus 1126 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~cp~ 1197 (1237)
+|+... .+..|+.+-.++ +.++.+++.+++++.+|.+||+.+ +.++.+|.+ +..++|+.|+++|+|+
T Consensus 473 lP~~~y---~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 473 LPECLY---ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred chHHHh---hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 554321 112333333333 566677766677777777777766 567777665 5577777777777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.1e-24 Score=243.11 Aligned_cols=110 Identities=32% Similarity=0.460 Sum_probs=93.0
Q ss_pred chhhhhcCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhccc
Q 000887 390 MVLSDLLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNL 469 (1237)
Q Consensus 390 ~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 469 (1237)
..|-++..+.-+|++|++++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+
T Consensus 35 ~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 35 SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISEL 113 (1081)
T ss_pred cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhh
Confidence 3344455555569999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred ccccEEeccCCCccccCcccccccccccccce
Q 000887 470 VNLHYLNIEGASALRELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 470 ~~L~~L~l~~~~~l~~ip~~~~~L~~L~~L~~ 501 (1237)
++|++|+++.| ....+|..+..++.+..+..
T Consensus 114 knl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 114 KNLQYLDLSFN-HFGPIPLVIEVLTAEEELAA 144 (1081)
T ss_pred hcccccccchh-ccCCCchhHHhhhHHHHHhh
Confidence 99999999998 67888887777777666643
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=8.8e-21 Score=245.14 Aligned_cols=341 Identities=19% Similarity=0.289 Sum_probs=227.7
Q ss_pred cccCCCCccceeEecCCC--C----ceecCCCC--CCCCccEEEecCCcchhhhhhhccccCCccceeeccCCCCccccc
Q 000887 801 QGLQRLTCLKDLLIGNCP--T----VVSLPKAC--FLPNLSEITIQDCNALASLTDGMIYNNARLEVLRIKRCDSLTSIS 872 (1237)
Q Consensus 801 ~~~~~l~~L~~L~l~~~~--~----l~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 872 (1237)
..+.++++|+.|.+.... . -..+|... ..++|+.|++.+++ ++.+|... .+.+|+.|++.++. +..++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCcc-ccccc
Confidence 457788999999886532 1 11233322 24579999999865 77787764 36889999998864 55554
Q ss_pred cc-CCCCCccEEEEecCCCccccccccccccCCCCccccccCCCCCcccceeEEEEecCCCcccccCCCCCccceeeeee
Q 000887 873 RE-HLPSSLQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSLTCLWSGGRLPVTLKRLRI 951 (1237)
Q Consensus 873 ~~-~~~~~L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 951 (1237)
.. ...++|+.+++++|..++. ++ ....+++|+.|++.+|..+..+|.....+++|+.|++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~-------------ip------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKE-------------IP------DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCc-------------CC------ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 32 2346788888888876652 22 2345678888999888888888888788888888888
Q ss_pred ecCCCccccCcCCCCCCcccEEEEcCCCCccccccccCCcccccEEeeccccccccccccccCCCCCceeeeccCCCcc-
Q 000887 952 EDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLV- 1030 (1237)
Q Consensus 952 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~- 1030 (1237)
++|..++.+|... .+++|+.|++++|..+..+|.. .++|+.|+++++ .+..+|..+ .+++|++|.+.+|....
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhc
Confidence 8888888887644 6678888888888887777653 357888888875 466777654 57888888887654211
Q ss_pred -----cCCC--CCCCCcchhhhhhccccccccCC-CCCCCcccEEeccCCCCccccCCCCCCCCcCceEecCCCCccccc
Q 000887 1031 -----SLPE--DALPSNVVDVLIEDCDKLKALIP-TGTLSSLRELALSECPGIVVFPEEGLSTNLTDLEISGDNMYKPLV 1102 (1237)
Q Consensus 1031 -----~l~~--~~~~~~l~~l~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1102 (1237)
.++. ...+++|+.|++++|..+..++. ++++++|+.|++++|..++.+|....+++|+.|++++|..+..++
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 1110 11234567777777665554433 366777777777777777777665556677777777776665554
Q ss_pred ccccCCCCCCceEEEcCCCCceeccCCCCccccCCCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCCCcccCC
Q 000887 1103 KWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFP 1179 (1237)
Q Consensus 1103 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~ 1179 (1237)
.. .++|+.|+++++ .++.+|.. +..+++|+.|++.+|++++.++ ..+..+++|+.+++++|+.++.++
T Consensus 843 ~~----~~nL~~L~Ls~n-~i~~iP~s---i~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 DI----STNISDLNLSRT-GIEEVPWW---IEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cc----ccccCEeECCCC-CCccChHH---HhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCccccccc
Confidence 32 356777777764 45555542 2345677777777777777766 345566777777777777666543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-23 Score=235.84 Aligned_cols=100 Identities=30% Similarity=0.452 Sum_probs=85.9
Q ss_pred CCccEEEccccccccccccc-cCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEecc
Q 000887 400 KKLRVLSLGSYCITEVPISI-GCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIE 478 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 478 (1237)
..+..|+++.|.+-..|-.| .+..+|+.||+++|.+...|..|..+.+|+.|+++.| .+..+|.+++++.+|++|.|.
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheec
Confidence 34888899888877766433 4445599999999999999999999999999999998 899999999999999999999
Q ss_pred CCCccccCcccccccccccccce
Q 000887 479 GASALRELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 479 ~~~~l~~ip~~~~~L~~L~~L~~ 501 (1237)
+| .+..+|.+++.+++|+.|++
T Consensus 100 ~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 100 NN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred cc-hhhcCchhHHhhhccccccc
Confidence 88 88999999988888888865
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-21 Score=207.80 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=62.4
Q ss_pred CccEEEccccccccc-cccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCCh-hhcccccccEEecc
Q 000887 401 KLRVLSLGSYCITEV-PISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPS-RIGNLVNLHYLNIE 478 (1237)
Q Consensus 401 ~Lr~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 478 (1237)
..+.|++++|.+..+ +..|.++++|+.+++.+|.++.+|.......+|+.|+|.+| .|.++-. ++..+..|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 446688888888776 45667888888888888888888776666777888888887 5655543 36777778888888
Q ss_pred CCCccccCcc
Q 000887 479 GASALRELPL 488 (1237)
Q Consensus 479 ~~~~l~~ip~ 488 (1237)
.| .+..+|.
T Consensus 158 rN-~is~i~~ 166 (873)
T KOG4194|consen 158 RN-LISEIPK 166 (873)
T ss_pred hc-hhhcccC
Confidence 77 5666654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=2.7e-22 Score=205.59 Aligned_cols=205 Identities=24% Similarity=0.201 Sum_probs=150.9
Q ss_pred chhhhhcCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhccc
Q 000887 390 MVLSDLLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNL 469 (1237)
Q Consensus 390 ~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 469 (1237)
..+|+.+.....++.|++++|.+.++|++++.+..|..|+..+|+|.++|..++.+.+|..|++.+| .+..+|+..-++
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m 182 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAM 182 (565)
T ss_pred hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHH
Confidence 4455566778888888888888888888888888888888888888888888888888888888887 788888877668
Q ss_pred ccccEEeccCCCccccCcccccccccccccceeeeccCCCcCcccccchHhcccceeecCccCCCChHHHHHHhhcCCCC
Q 000887 470 VNLHYLNIEGASALRELPLGMKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEG 549 (1237)
Q Consensus 470 ~~L~~L~l~~~~~l~~ip~~~~~L~~L~~L~~~~~~~~~~~~i~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 549 (1237)
+.|++||...| .++.+|.+++.|.+|..|++-.+.......+.....|.++.
T Consensus 183 ~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh--------------------------- 234 (565)
T KOG0472|consen 183 KRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH--------------------------- 234 (565)
T ss_pred HHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH---------------------------
Confidence 88888888888 78888888888888888866444332222333333333333
Q ss_pred CCeeEeeeCCCCCCCCcchHHHHhhhhcCCCCCCccEEEEeecCCCCCCCCCCCCCCCCccEEEEccCCCCCcCCCCCCc
Q 000887 550 LTDLKLDWRPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRFPSWVGDPSFSNVAVLILKNCRRSTSLPSLGQL 629 (1237)
Q Consensus 550 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l 629 (1237)
+. ....+.---+..+.++++..|++.+++..++|..+. -+++|++|++++|....-.+.++++
T Consensus 235 -----~g----------~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 235 -----VG----------ENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred -----hc----------ccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc
Confidence 10 000001111234567888899999999988887654 5788999999999754444489999
Q ss_pred cccceeEecCCC
Q 000887 630 CSLKDLTIVGMS 641 (1237)
Q Consensus 630 ~~L~~L~l~~~~ 641 (1237)
.|+.|-+.|++
T Consensus 298 -hL~~L~leGNP 308 (565)
T KOG0472|consen 298 -HLKFLALEGNP 308 (565)
T ss_pred -eeeehhhcCCc
Confidence 99999999975
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.1e-21 Score=211.32 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred cCcCCCCCCcccEEEEcCCCCccccccccCCcccccEEeeccccccccccccccCCCCCceeeeccCCCcccCCCCC
Q 000887 960 LTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDA 1036 (1237)
Q Consensus 960 l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1036 (1237)
+|+.++.+.+|+.++..+ +.++-+|++++.+++|+.|.|+. +.+..+|+++.-++.|+.|+++.++++..-|...
T Consensus 308 iPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred CccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 334444455666666665 46777888888888888888876 5677788888888888888888888877665544
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=6.7e-19 Score=190.20 Aligned_cols=225 Identities=22% Similarity=0.263 Sum_probs=146.8
Q ss_pred hcCCCCCccEEEccccccc--cccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhh-ccccc
Q 000887 395 LLPQCKKLRVLSLGSYCIT--EVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRI-GNLVN 471 (1237)
Q Consensus 395 ~~~~~~~Lr~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 471 (1237)
-++.++.||.+++..|++. -+|+.+-.+..|.+||||+|++++.|..+..-+++-+|+||+| +|..||..+ -+|+-
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 3567889999999999986 5798899999999999999999999999999999999999998 999999885 78999
Q ss_pred ccEEeccCCCccccCcccccccccccccceeeeccCCCcCcccccchHhcccceeecCccCCCChHHHHHHhhcCCCCCC
Q 000887 472 LHYLNIEGASALRELPLGMKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEGLT 551 (1237)
Q Consensus 472 L~~L~l~~~~~l~~ip~~~~~L~~L~~L~~~~~~~~~~~~i~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 551 (1237)
|-+|||++| ++..+|+.+..|..|++|.+.++... ...+++|++++.|. +..+.+......-.+..+..+.+|.
T Consensus 152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~----vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLS----VLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhh----hhhcccccchhhcCCCchhhhhhhh
Confidence 999999999 89999999999999999987554321 22344455554444 1222222222222222333344444
Q ss_pred eeEeeeCCCCCCCCcchHHHHhhhhcCCCCCCccEEEEeecCCCCCCCCCCCCCCCCccEEEEccCCCCCcCC-CCCCcc
Q 000887 552 DLKLDWRPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRFPSWVGDPSFSNVAVLILKNCRRSTSLP-SLGQLC 630 (1237)
Q Consensus 552 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~ 630 (1237)
.++++.+.. ..+.+.+-.+.+|+.|+++++.++.+....+ ...+|+.|+++.|. +..+| .+..++
T Consensus 226 dvDlS~N~L-----------p~vPecly~l~~LrrLNLS~N~iteL~~~~~--~W~~lEtLNlSrNQ-Lt~LP~avcKL~ 291 (1255)
T KOG0444|consen 226 DVDLSENNL-----------PIVPECLYKLRNLRRLNLSGNKITELNMTEG--EWENLETLNLSRNQ-LTVLPDAVCKLT 291 (1255)
T ss_pred hccccccCC-----------CcchHHHhhhhhhheeccCcCceeeeeccHH--HHhhhhhhccccch-hccchHHHhhhH
Confidence 444433221 1122333344555555555555554432222 23455556666554 34444 455566
Q ss_pred ccceeEecCC
Q 000887 631 SLKDLTIVGM 640 (1237)
Q Consensus 631 ~L~~L~l~~~ 640 (1237)
+|+.|++.++
T Consensus 292 kL~kLy~n~N 301 (1255)
T KOG0444|consen 292 KLTKLYANNN 301 (1255)
T ss_pred HHHHHHhccC
Confidence 6666655543
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=5.5e-12 Score=163.94 Aligned_cols=277 Identities=13% Similarity=0.194 Sum_probs=175.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcC-CcCHHHHHHHHHHHhhccCCC-------------ccC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSD-DFDVLRISKAILDSIKRSSCK-------------LED 76 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~-------------~~~ 76 (1237)
...+++.|+|++|.||||++.++++. ++.++|+++.. +.+...+...++..+...... ..+
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 45789999999999999999997752 22688999864 446666667777766422111 012
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEeCCCCCChhhHHHhhcc-ccCCCCCcEEEEEeCchhHH--Hhhc-CCCeEeCC----
Q 000887 77 LNSVQLELKETVF--KKKFLIVLDDVWSERYDLWQALKSP-FMAGAPGSRIIVTTRSMDVA--LTMG-SGKNYELK---- 146 (1237)
Q Consensus 77 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~~~~~-~~~~~~~~~iliTtR~~~~~--~~~~-~~~~~~l~---- 146 (1237)
.......+...+. +++++||+||+...+.......... +...+++.++|||||..... .... .....+++
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2233333333333 5799999999965432333333333 33346678899999984221 1111 12345556
Q ss_pred CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCC-HHHHHHHHhhcccccCCCCChh
Q 000887 147 LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQG-VDEWRAILDSKIWNLQDKTEIP 225 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~i~ 225 (1237)
+|+.+|+.++|....+.. . ..+.+.+|.+.++|+|+++..++..++.... .... .... .. .....+.
T Consensus 185 ~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~~~~-~~-~~~~~~~ 252 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---ARRL-AG-INASHLS 252 (903)
T ss_pred CCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---hHhh-cC-CCchhHH
Confidence 999999999998765321 1 2556789999999999999999887765432 1111 1110 00 0113355
Q ss_pred HHHH-HHhhcChHHHHHHHhhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccc-cCCCC
Q 000887 226 SVLK-LSYHHLPSHLKRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQK-SSNTE 303 (1237)
Q Consensus 226 ~~l~-~s~~~L~~~~~~~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~~~~ 303 (1237)
..+. ..++.||++.++++...|+++ .++.+..-. +.+. +.+...+..|.+.+++.. .+...
T Consensus 253 ~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~ 315 (903)
T PRK04841 253 DYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE--------ENGQMRLEELERQGLFIQRMDDSG 315 (903)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC--------CcHHHHHHHHHHCCCeeEeecCCC
Confidence 5443 348999999999999999985 333332221 1111 113566899999999764 34445
Q ss_pred CcchhhhHHHHHHhhhcc
Q 000887 304 SKYVMHDLVHDLAQWASG 321 (1237)
Q Consensus 304 ~~~~~h~lv~~~~~~~~~ 321 (1237)
.+|+.|++++++++....
T Consensus 316 ~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 316 EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CEEehhHHHHHHHHHHHH
Confidence 689999999999987753
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=1.8e-12 Score=154.48 Aligned_cols=155 Identities=27% Similarity=0.398 Sum_probs=85.4
Q ss_pred CcccEEEEcCCCCccccccccCCcccccEEeeccccccccccccccCCCCCceeeeccCCCcccCCCCCCCCcchhhhhh
Q 000887 968 VEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVLIE 1047 (1237)
Q Consensus 968 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~l~ 1047 (1237)
++|+.|++++| .+..+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++ +.++.+|..
T Consensus 302 ~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l------------ 360 (788)
T PRK15387 302 PGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPTL------------ 360 (788)
T ss_pred cccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCC-CccCCCCCC------------
Confidence 45555555554 23333321 124555566553 34444431 13566666665 345555431
Q ss_pred ccccccccCCCCCCCcccEEeccCCCCccccCCCCCCCCcCceEecCCCCcccccccccCCCCCCceEEEcCCCCceecc
Q 000887 1048 DCDKLKALIPTGTLSSLRELALSECPGIVVFPEEGLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFP 1127 (1237)
Q Consensus 1048 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 1127 (1237)
.++|+.|++++| .+..+|. .+++|+.|++++|... .+|.. .++|+.|++++| .+..+|
T Consensus 361 -------------p~~L~~L~Ls~N-~L~~LP~--l~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N-~LssIP 418 (788)
T PRK15387 361 -------------PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLT-SLPVL----PSELKELMVSGN-RLTSLP 418 (788)
T ss_pred -------------Ccccceehhhcc-ccccCcc--cccccceEEecCCccc-CCCCc----ccCCCEEEccCC-cCCCCC
Confidence 234555555555 2444443 2346667777665433 33321 246777777775 456666
Q ss_pred CCCCccccCCCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCC
Q 000887 1128 DVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCP 1173 (1237)
Q Consensus 1128 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 1173 (1237)
. .+.+|+.|++++ |.++.+| ..+.++++|+.|++++++
T Consensus 419 ~------l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 419 M------LPSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred c------chhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCCC
Confidence 4 345677777777 5677777 456677888888887754
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=7.1e-12 Score=149.52 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccC
Q 000887 400 KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEG 479 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 479 (1237)
..-.+|+|+++.++.+|..+. .+|+.|++++|.++.+|. .+++|++|++++| .+..+|.. ..+|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446788999999999988775 489999999999998886 3578999999998 88888863 46788888988
Q ss_pred CCccccCccc
Q 000887 480 ASALRELPLG 489 (1237)
Q Consensus 480 ~~~l~~ip~~ 489 (1237)
| .+..+|..
T Consensus 272 N-~L~~Lp~l 280 (788)
T PRK15387 272 N-PLTHLPAL 280 (788)
T ss_pred C-chhhhhhc
Confidence 8 57777653
No 18
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.34 E-value=5.8e-12 Score=144.53 Aligned_cols=283 Identities=17% Similarity=0.209 Sum_probs=185.7
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhccCC-------------Cc
Q 000887 9 DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRSSC-------------KL 74 (1237)
Q Consensus 9 ~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~-------------~~ 74 (1237)
...+.|.+.|..++|.||||++.+++. . ...-..|.|++++.. .+.......++..++.-.. +.
T Consensus 33 ~~~~~RL~li~APAGfGKttl~aq~~~-~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~ 110 (894)
T COG2909 33 RANDYRLILISAPAGFGKTTLLAQWRE-L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQY 110 (894)
T ss_pred cCCCceEEEEeCCCCCcHHHHHHHHHH-h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccc
Confidence 345789999999999999999999875 2 222345889998755 4677777777777763221 23
Q ss_pred cCHHHHHHHHHHHhc--CCcEEEEEeCCCCCChhhHH-HhhccccCCCCCcEEEEEeCchhHHHh--hcC-CCeEeCC--
Q 000887 75 EDLNSVQLELKETVF--KKKFLIVLDDVWSERYDLWQ-ALKSPFMAGAPGSRIIVTTRSMDVALT--MGS-GKNYELK-- 146 (1237)
Q Consensus 75 ~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~-~~~~~~~~~~~~~~iliTtR~~~~~~~--~~~-~~~~~l~-- 146 (1237)
.+...+...+...+. .++..+|+||..-....... .+...+...+.+-.++||||.+..... +.. ...++++
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~ 190 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSE 190 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChH
Confidence 444445555555444 47899999998544333333 344444556778999999998754421 111 1234444
Q ss_pred --CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCHHHHHHHHhhcccccCCCCCh
Q 000887 147 --LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQDKTEI 224 (1237)
Q Consensus 147 --~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i 224 (1237)
.|+.+|+.++|....+.. -....+..+.+..+|.+-|+.+++-.++++.+.+.-...+..... .-.
T Consensus 191 ~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~-----~l~ 258 (894)
T COG2909 191 ELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAAS-----HLS 258 (894)
T ss_pred hhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHH-----HHH
Confidence 489999999998765221 124567899999999999999999888854442222221111000 000
Q ss_pred hHHHHHHhhcChHHHHHHHhhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccc-cCCCC
Q 000887 225 PSVLKLSYHHLPSHLKRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQK-SSNTE 303 (1237)
Q Consensus 225 ~~~l~~s~~~L~~~~~~~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~~~~ 303 (1237)
.-..+--++.||++.|..++-+|+++. +. ..+.... +-++.+..++++|.+++++.. -++..
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCCC
Confidence 112234478999999999999999842 11 1222211 112335667999999998764 46678
Q ss_pred CcchhhhHHHHHHhhhccc
Q 000887 304 SKYVMHDLVHDLAQWASGE 322 (1237)
Q Consensus 304 ~~~~~h~lv~~~~~~~~~~ 322 (1237)
.||+.|++..+|.+.....
T Consensus 322 ~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 322 QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ceeehhHHHHHHHHhhhcc
Confidence 9999999999999877654
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-12 Score=159.01 Aligned_cols=290 Identities=27% Similarity=0.363 Sum_probs=184.0
Q ss_pred CCCccEEEccccc--ccccccc-ccCCCCCCeEEccCCC-ccccchhhcccCCccEEEcCccccCccCChhhcccccccE
Q 000887 399 CKKLRVLSLGSYC--ITEVPIS-IGCLKQLRYLNFSRSE-IQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHY 474 (1237)
Q Consensus 399 ~~~Lr~L~L~~~~--i~~lp~~-~~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 474 (1237)
++.|++|-+.+|. +..++.. |..++.||+|||++|. +..+|++|+.|.+||||+++++ .+..+|.++++|+.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 4479999999997 6777654 6889999999999764 6799999999999999999998 89999999999999999
Q ss_pred EeccCCCccccCcccccccccccccceeeec-cCCCcCcccccchHhcccceeecCccCCCChHHHHHHhhcCCCCCCee
Q 000887 475 LNIEGASALRELPLGMKELKCLRTLTNFIVG-KDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEGLTDL 553 (1237)
Q Consensus 475 L~l~~~~~l~~ip~~~~~L~~L~~L~~~~~~-~~~~~~i~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 553 (1237)
|++..+..+..+|..+..|.+||+|.++... ..+...+.++.+|+.|+ .+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-----------------------------~l 673 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-----------------------------NL 673 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-----------------------------hh
Confidence 9999997777887767779999999886654 22233344444444444 22
Q ss_pred EeeeCCCCCCCCcchHHHHhhhhcCCCCCCcc----EEEEeecCCCCCCCCCCCCCCCCccEEEEccCCCCCcCC-C---
Q 000887 554 KLDWRPRRDGDSVDEAREKNILDMLKPHSNIK----RLEIHSYGGTRFPSWVGDPSFSNVAVLILKNCRRSTSLP-S--- 625 (1237)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~--- 625 (1237)
+..-.. . ..++.+.....|. .+.+.+......+... ..+.+|+.|.+.+|....... +
T Consensus 674 s~~~~s-----------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~--~~l~~L~~L~i~~~~~~e~~~~~~~~ 739 (889)
T KOG4658|consen 674 SITISS-----------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSL--GSLGNLEELSILDCGISEIVIEWEES 739 (889)
T ss_pred eeecch-----------h-HhHhhhhhhHHHHHHhHhhhhcccccceeeccc--ccccCcceEEEEcCCCchhhcccccc
Confidence 221000 0 0111111111111 1111111111111111 268899999999998653221 1
Q ss_pred --CCC-ccccceeEecCCCCceeecccccCCCcccCCcccceeeccccccccccccCCCCc----ccccccccccee-ec
Q 000887 626 --LGQ-LCSLKDLTIVGMSELKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDND----EHVQAFPRLRKL-SI 697 (1237)
Q Consensus 626 --l~~-l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~~~~L~~L-~l 697 (1237)
... ++++..+.+.+|..........+ .|+|+.|.+..+...++..+..... .....|..+..+ .+
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-------~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHMLRDLTWLLF-------APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred cchhhhHHHHHHHHhhccccccccchhhc-------cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 122 66788888888877776654332 6899999999998877765433211 012345555555 34
Q ss_pred cCCCCccC--CCCCCCCCcceEEeccccCccccCCCCCcccEEEEcCC
Q 000887 698 KKCPKLSG--RLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGC 743 (1237)
Q Consensus 698 ~~~~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~ 743 (1237)
.+.+.+.. ..|-.++.|+++.+..|+.+. .+|.+..+.+.+|
T Consensus 813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~----~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLG----KLPLLSTLTIVGC 856 (889)
T ss_pred ecCCCCceeEecccCccchhheehhcCcccc----cCccccccceecc
Confidence 44333331 233445567888888776654 4566666666665
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=2.3e-13 Score=140.75 Aligned_cols=284 Identities=18% Similarity=0.196 Sum_probs=169.2
Q ss_pred eeEEEEecCCCcccccCC-CCCccceeeeeeecCCCccccCcCCCCCCcccEEEEcCCCCcccccc-ccCCcccccEEee
Q 000887 922 LESLFVYRCPSLTCLWSG-GRLPVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAE-RFHDDACLRSIWI 999 (1237)
Q Consensus 922 L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l 999 (1237)
...+++.. +.++.+|.+ ++.+++|+.|+++++.....-+..+.++.+|.+|-+.+++++.+++. .|.++.+|+.|.+
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34455554 455555554 44566666666666544433444455556666666666556666553 4555666666666
Q ss_pred ccccccccccccccCCCCCceeeeccCCCcccCCCCCCC--Ccchhhhh------hccccc-------cccCCCCCCCcc
Q 000887 1000 SSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALP--SNVVDVLI------EDCDKL-------KALIPTGTLSSL 1064 (1237)
Q Consensus 1000 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~l~~l~l------~~~~~~-------~~~~~~~~l~~L 1064 (1237)
..|..--.....+..+++|..|.++. +.+..++...+. .+++.+.+ .+|+.. .....++.++-.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 55432222333556666666666666 344444442221 12222221 111110 000000111111
Q ss_pred cEEeccCCCCccccCCCCCC---CCcCceEecCCCCcccccccccCCCCCCceEEEcCCCCceeccCCCCccccCCCcCe
Q 000887 1065 RELALSECPGIVVFPEEGLS---TNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTS 1141 (1237)
Q Consensus 1065 ~~L~l~~c~~l~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~ 1141 (1237)
....+.+. .+..+....+. ..+..=..+.|......|...|+.+++|++|++++| .++.+.+ ++|.....++.
T Consensus 227 ~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~--~aFe~~a~l~e 302 (498)
T KOG4237|consen 227 SPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIED--GAFEGAAELQE 302 (498)
T ss_pred chHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhh--hhhcchhhhhh
Confidence 11111100 11112222221 122222344555556667777999999999999996 5666655 45656789999
Q ss_pred eeecCCCCccccCcccCCCCCCCCeeeecCCCCcccCCCCCC--CCcccEeeecCCCCcccccccCCccccccc
Q 000887 1142 ITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPEAGF--PSSLLSLEIQRCPLLEKCKMRKGQEWPKIA 1213 (1237)
Q Consensus 1142 L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~cp~l~~c~~~~~~~~~~~~ 1213 (1237)
|.+.. +++..+....|.++..|+.|++++ ++++.+..+.| +.+|.+|.+-++|..|+|...|..+|..-.
T Consensus 303 L~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 303 LYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred hhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 99999 899999989999999999999999 68998887766 689999999999999999999999997653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-13 Score=123.10 Aligned_cols=101 Identities=32% Similarity=0.384 Sum_probs=59.4
Q ss_pred CCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEec
Q 000887 398 QCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNI 477 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 477 (1237)
.+.++..|.|++|.++.+|+.+..+.+|++|++++|+|+++|.+++.+++|+.|++.-| .+..+|.+||.++-|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 34555556666666666666666666666666666666666666666666666666655 55566666666666666666
Q ss_pred cCCCc-cccCccccccccccccc
Q 000887 478 EGASA-LRELPLGMKELKCLRTL 499 (1237)
Q Consensus 478 ~~~~~-l~~ip~~~~~L~~L~~L 499 (1237)
..|+- -..+|..|-.|+.|+-|
T Consensus 110 tynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred cccccccccCCcchhHHHHHHHH
Confidence 65521 12345444444444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=7.9e-13 Score=120.19 Aligned_cols=90 Identities=29% Similarity=0.396 Sum_probs=81.4
Q ss_pred cccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccCCCccccCccccccc
Q 000887 414 EVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEGASALRELPLGMKEL 493 (1237)
Q Consensus 414 ~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ip~~~~~L 493 (1237)
++|. +-++.+...|.|++|.+..+|+.|..|.+|+.|++.+| .++++|.+|+.|++|++|+++-| ++..+|++|+.+
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCC
Confidence 3444 45788899999999999999999999999999999998 99999999999999999999998 899999999999
Q ss_pred ccccccceeeecc
Q 000887 494 KCLRTLTNFIVGK 506 (1237)
Q Consensus 494 ~~L~~L~~~~~~~ 506 (1237)
+.|+.|++..+..
T Consensus 102 p~levldltynnl 114 (264)
T KOG0617|consen 102 PALEVLDLTYNNL 114 (264)
T ss_pred chhhhhhcccccc
Confidence 9999998865543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-12 Score=135.54 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred CCcchhhhhcCCCCCccEEEccccccccc-cccccCCCCCCeEEccC-CCccccch-hhcccCCccEEEcCccccCccCC
Q 000887 387 ISPMVLSDLLPQCKKLRVLSLGSYCITEV-PISIGCLKQLRYLNFSR-SEIQCLPD-AICSLFNLEILILRNCWCLLKLP 463 (1237)
Q Consensus 387 ~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp 463 (1237)
.+..+|+.+|+.+++||.|||+.|+|+.+ |+.|..+..|-.|-+.+ |.|+++|. .|++|..|+.|.+.-| .+.-++
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchh
Confidence 34556666666666666666666666655 55565555555544444 56666655 5666666666666555 444443
Q ss_pred hh-hcccccccEEeccCCCccccCccc-ccccccccccce
Q 000887 464 SR-IGNLVNLHYLNIEGASALRELPLG-MKELKCLRTLTN 501 (1237)
Q Consensus 464 ~~-i~~L~~L~~L~l~~~~~l~~ip~~-~~~L~~L~~L~~ 501 (1237)
.. +..|++|..|.+.+| .++.++.+ +..+.+++++.+
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhh
Confidence 33 456666666666665 55556553 555556655544
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=8.4e-11 Score=141.72 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=63.0
Q ss_pred CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccC
Q 000887 400 KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEG 479 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 479 (1237)
.+..+|+++++.++.+|..+. ++|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356788888888888887664 578888888888888887654 48888888887 6778887653 4688888888
Q ss_pred CCccccCcccc
Q 000887 480 ASALRELPLGM 490 (1237)
Q Consensus 480 ~~~l~~ip~~~ 490 (1237)
| .+..+|..+
T Consensus 251 N-~L~~LP~~l 260 (754)
T PRK15370 251 N-RITELPERL 260 (754)
T ss_pred C-ccCcCChhH
Confidence 8 566777654
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=1.6e-10 Score=139.45 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=75.2
Q ss_pred CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccC
Q 000887 400 KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEG 479 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 479 (1237)
++|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 478999999999999987664 589999999999999988664 47999999998 7888998775 5899999998
Q ss_pred CCccccCcccccccccccccce
Q 000887 480 ASALRELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 480 ~~~l~~ip~~~~~L~~L~~L~~ 501 (1237)
| .+..+|..+. .+|+.|++
T Consensus 272 N-~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 272 N-KISCLPENLP--EELRYLSV 290 (754)
T ss_pred C-ccCccccccC--CCCcEEEC
Confidence 8 7888887653 36666654
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=2.4e-12 Score=134.69 Aligned_cols=90 Identities=11% Similarity=0.276 Sum_probs=58.9
Q ss_pred cceeEEEEecCCCccccccccccccccCCCCccceeEecCCCCceecCCC---CCCCCccEEEecCCcchhhhh-hhccc
Q 000887 777 QKVEQLMIVGCEGFVNEICLEKPLQGLQRLTCLKDLLIGNCPTVVSLPKA---CFLPNLSEITIQDCNALASLT-DGMIY 852 (1237)
Q Consensus 777 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~~~-~~~~~ 852 (1237)
..|+.|.+++|.... +..+......+|+++.|.+.+|.++++..-. ..+++|+.|.+..|..++... .....
T Consensus 138 g~lk~LSlrG~r~v~----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCC----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 356777777776543 2223334566778888888887766654322 237788888888887777633 23445
Q ss_pred cCCccceeeccCCCCccc
Q 000887 853 NNARLEVLRIKRCDSLTS 870 (1237)
Q Consensus 853 ~~~~L~~L~l~~c~~l~~ 870 (1237)
.+++|++|+++.|+.+..
T Consensus 214 gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhhhHHHhhhccCchhhc
Confidence 678888888888877765
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=9.4e-09 Score=112.21 Aligned_cols=182 Identities=17% Similarity=0.129 Sum_probs=114.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH-----
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET----- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----- 87 (1237)
.++++|+|++|+||||+++.++.......+ .++|+ +....+..+++..++..++.+... .+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 458999999999999999998875332211 12233 233446678888888888765332 2222233333322
Q ss_pred hcCCcEEEEEeCCCCCChhhHHHhhcccc---CCCCCcEEEEEeCchhHHHhh----------cCCCeEeCCCCChhhhH
Q 000887 88 VFKKKFLIVLDDVWSERYDLWQALKSPFM---AGAPGSRIIVTTRSMDVALTM----------GSGKNYELKLLSDDDCW 154 (1237)
Q Consensus 88 l~~~~~LlvlDdv~~~~~~~~~~~~~~~~---~~~~~~~iliTtR~~~~~~~~----------~~~~~~~l~~l~~~ea~ 154 (1237)
..+++.++|+||++......++.+..... .......|++|.... ....+ .....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 25678999999997765445555433221 112233455665432 21111 11246789999999999
Q ss_pred HHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 155 SVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
+++...+...+......-.+++.+.|++.++|.|..|+.++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987764332211122336889999999999999999888776
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=6.1e-12 Score=131.74 Aligned_cols=276 Identities=17% Similarity=0.244 Sum_probs=140.1
Q ss_pred CccceeEecCCCCceecCCC---CCCCCccEEEecCCcchhhhh-hhccccCCccceeeccCCCCccccccc---CCCCC
Q 000887 807 TCLKDLLIGNCPTVVSLPKA---CFLPNLSEITIQDCNALASLT-DGMIYNNARLEVLRIKRCDSLTSISRE---HLPSS 879 (1237)
Q Consensus 807 ~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~ 879 (1237)
..|++|.+.+|.....-+.. ..+|++++|.+.+|..++... ..+...+++|++|++..|..+++.... ...++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46899999999876654432 238999999999998877632 233446889999999999888775433 22356
Q ss_pred ccEEEEecCCCccccccccccccCCCCccccccCCCCCcccceeEEEEecCCCcc--cccCCCCCccceeeeeeecCCCc
Q 000887 880 LQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSLT--CLWSGGRLPVTLKRLRIEDCSNF 957 (1237)
Q Consensus 880 L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~c~~l 957 (1237)
|+.+.++.|+.++ ...+.....++..++.+...+|..+. .+-......+-
T Consensus 218 L~~lNlSwc~qi~----------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~------------ 269 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS----------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE------------ 269 (483)
T ss_pred HHHhhhccCchhh----------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH------------
Confidence 7777777776554 12233334444445555555554332 11111222233
Q ss_pred cccCcCCCCCCcccEEEEcCCCCccccc--cccCCcccccEEeecccccccccc--ccccCCCCCceeeeccCCCcccCC
Q 000887 958 KVLTSECQLPVEVEELTIYGCSNLESIA--ERFHDDACLRSIWISSCENLKSLP--KGLSNLSHLHEIRIVRCHNLVSLP 1033 (1237)
Q Consensus 958 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~ 1033 (1237)
+.++++..|..+.+.. ..-..+..|+.|..++|..++..+ .--+++.+|+.|.+.+|..+++..
T Consensus 270 ------------i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 270 ------------ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred ------------hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 3344444444443322 222344555666666655544322 122445666666666666555433
Q ss_pred CCCCC---Ccchhhhhhcccccccc---CCCCCCCcccEEeccCCCCccccCCC------CCCCCcCceEecCCCCcccc
Q 000887 1034 EDALP---SNVVDVLIEDCDKLKAL---IPTGTLSSLRELALSECPGIVVFPEE------GLSTNLTDLEISGDNMYKPL 1101 (1237)
Q Consensus 1034 ~~~~~---~~l~~l~l~~~~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~~~~~~~~ 1101 (1237)
..... ..|+.+++..|...... ....+++.|+.|.+++|..++.-.+- .....|+.+.+++|+.+++-
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 22211 22333333333322111 11135666666666666544433111 11334444444444444333
Q ss_pred cccccCCCCCCceEEEcCCCC
Q 000887 1102 VKWGFHKLTSLRKLYIDGCSD 1122 (1237)
Q Consensus 1102 ~~~~~~~l~~L~~L~l~~c~~ 1122 (1237)
....+..+++|+.+++.+|..
T Consensus 418 ~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred HHHHHhhCcccceeeeechhh
Confidence 222333444444444444443
No 29
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=1.8e-09 Score=108.43 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccC-----CCCeEEEEEcCCcCHH---HHHHHHHHHhhccCCCccCHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSDDFDVL---RISKAILDSIKRSSCKLEDLNSVQLELK 85 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~-----f~~~~w~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 85 (1237)
|++.|+|.+|+|||+++++++.+..... +..++|+......... .+...+....... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---IAPIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc---hhhhHHHHHHH-
Confidence 5899999999999999999987653322 3445566665443322 3444444433221 11112211111
Q ss_pred HHhcCCcEEEEEeCCCCCChh-------hHHHhhccccC--CCCCcEEEEEeCchhHH---HhhcCCCeEeCCCCChhhh
Q 000887 86 ETVFKKKFLIVLDDVWSERYD-------LWQALKSPFMA--GAPGSRIIVTTRSMDVA---LTMGSGKNYELKLLSDDDC 153 (1237)
Q Consensus 86 ~~l~~~~~LlvlDdv~~~~~~-------~~~~~~~~~~~--~~~~~~iliTtR~~~~~---~~~~~~~~~~l~~l~~~ea 153 (1237)
..+.++++||+|++++.... .+..+...+.. ..++++++||+|..... ........+++++|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12468999999999653221 12222222222 26789999999987662 2234446899999999999
Q ss_pred HHHHHHHh
Q 000887 154 WSVFVAHA 161 (1237)
Q Consensus 154 ~~l~~~~~ 161 (1237)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 30
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=116.33 Aligned_cols=294 Identities=19% Similarity=0.199 Sum_probs=193.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
...|.+.++|.||||||+++.++++ .+..| +++.+++...-.+...+.-.+...++.... +.+.....+.....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~--~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH--AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh--HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 3468899999999999999999877 44555 456677777777888888888888876642 22344445666777
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCeEeCCCCChh-hhHHHHHHHhcCCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELKLLSDD-DCWSVFVAHAFEGRDAG 168 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~-ea~~l~~~~~~~~~~~~ 168 (1237)
++|.++|+||.... .+...+....+....+...++.|+|..... ..+....+++++.- ++.++|...+.......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 234445555566667778899999975432 34456777777764 79999877664333221
Q ss_pred -CCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCC-------HHHHHHHHhhcccccCCCCChhHHHHHHhhcChHHHH
Q 000887 169 -THGNFESTRQRVVEKCKGLPLAARALGGLLRSKQG-------VDEWRAILDSKIWNLQDKTEIPSVLKLSYHHLPSHLK 240 (1237)
Q Consensus 169 -~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~~L~~~~~ 240 (1237)
-.........+|+++.+|.|++|..+++..+.-.. .+.|..+-+........+......+.+||.-|..-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 12334678899999999999999999999876532 1223222222111111245677899999999999999
Q ss_pred HHHhhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccccC-CCCCcchhhhHHHHHHhhh
Q 000887 241 RCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSS-NTESKYVMHDLVHDLAQWA 319 (1237)
Q Consensus 241 ~~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~~h~lv~~~~~~~ 319 (1237)
-.|..++.|...|..... .|.+-|-......+ ..-..+-.+++++++.-.+ .+...|+.-+-++.|+-..
T Consensus 243 ~~~~rLa~~~g~f~~~l~----~~~a~g~~~~~~~y-----~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLA----LAVAAGADVDVPRY-----LVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhcccHH----HHHhcCCccccchH-----HHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999888775522 23322211100011 1122345677777765432 2345677777777776554
Q ss_pred ccc
Q 000887 320 SGE 322 (1237)
Q Consensus 320 ~~~ 322 (1237)
..+
T Consensus 314 L~r 316 (414)
T COG3903 314 LHR 316 (414)
T ss_pred HHh
Confidence 433
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.95 E-value=6.4e-08 Score=112.12 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=156.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcCHHHHHHHHHHHhhcc-C-CCccCHHHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFDVLRISKAILDSIKRS-S-CKLEDLNSVQLELKET 87 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-~-~~~~~~~~~~~~l~~~ 87 (1237)
+..+.+.|+|++|+|||++++++++...... ...++++++....+...++..++.++... . ....+.++....+.+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 3445678999999999999999988542222 23466777777777888888999988652 1 1233556677777777
Q ss_pred hc--CCcEEEEEeCCCCCC----hhhHHHhhccccCC-CCCcEEEEEeCchhHHHhhc-------CCCeEeCCCCChhhh
Q 000887 88 VF--KKKFLIVLDDVWSER----YDLWQALKSPFMAG-APGSRIIVTTRSMDVALTMG-------SGKNYELKLLSDDDC 153 (1237)
Q Consensus 88 l~--~~~~LlvlDdv~~~~----~~~~~~~~~~~~~~-~~~~~iliTtR~~~~~~~~~-------~~~~~~l~~l~~~ea 153 (1237)
+. +++.+||+|+++.-. .+.+..+...+... +.+..+|.++....+..... ....+.+++++.++.
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~ 212 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEI 212 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHH
Confidence 65 356899999995421 12233333222211 11333666666543322211 124688999999999
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHHHHHHc----cCCchHHHHHHhH--hh--c-CC--CHHHHHHHHhhcccccCCCC
Q 000887 154 WSVFVAHAFEGRDAGTHGNFESTRQRVVEKC----KGLPLAARALGGL--LR--S-KQ--GVDEWRAILDSKIWNLQDKT 222 (1237)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~PLal~~~~~~--l~--~-~~--~~~~~~~~l~~~~~~~~~~~ 222 (1237)
.+++..++....... .-..++++.+++.+ |..+.|+.++-.. .+ + .. +.+.+..+.+..
T Consensus 213 ~~il~~r~~~~~~~~--~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~-------- 282 (394)
T PRK00411 213 FDILKDRVEEGFYPG--VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS-------- 282 (394)
T ss_pred HHHHHHHHHhhcccC--CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH--------
Confidence 999988764221111 11134445555544 5567776665322 11 1 11 245555554432
Q ss_pred ChhHHHHHHhhcChHHHHHHHhhhccCCC--CcccChHHHHHH--HHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccc
Q 000887 223 EIPSVLKLSYHHLPSHLKRCFAYCAVLPK--DYEFKEKELVLL--WIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQK 298 (1237)
Q Consensus 223 ~i~~~l~~s~~~L~~~~~~~~~~la~~~~--~~~~~~~~l~~~--w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 298 (1237)
-.....-.++.||.++|..+..++..-+ ...+....+... .+++.+-.. .........++.+|...+++..
T Consensus 283 -~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 283 -EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 1233455688999999988877764421 123444444321 222211111 0112335567888888888875
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.76 E-value=1.1e-06 Score=100.75 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=151.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhccccc--CC---CCeEEEEEcCCcCHHHHHHHHHHHhh---ccCC-CccCHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTE--AF---EPKAWVCVSDDFDVLRISKAILDSIK---RSSC-KLEDLNSVQ 81 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~--~f---~~~~w~~~~~~~~~~~~~~~i~~~l~---~~~~-~~~~~~~~~ 81 (1237)
+..+.+.|+|++|+|||++++++++..... .. -.++|+++....+...++..++.++. .... ...+.++..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 344678999999999999999998754211 11 13568887777777888899999884 2211 222345555
Q ss_pred HHHHHHhc--CCcEEEEEeCCCCCC---hhhHHHhhccc-cCC--CCCcEEEEEeCchhHHHhh----cC---CCeEeCC
Q 000887 82 LELKETVF--KKKFLIVLDDVWSER---YDLWQALKSPF-MAG--APGSRIIVTTRSMDVALTM----GS---GKNYELK 146 (1237)
Q Consensus 82 ~~l~~~l~--~~~~LlvlDdv~~~~---~~~~~~~~~~~-~~~--~~~~~iliTtR~~~~~~~~----~~---~~~~~l~ 146 (1237)
..+.+.+. +++++||+|+++.-. .+....+.... ... +.+..+|.++........+ .. ...+.++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP 197 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC
Confidence 56666553 467899999995431 11122222210 111 1334555555544332111 11 2468899
Q ss_pred CCChhhhHHHHHHHhcCCC-CCCCCCChHHHHHHHHHHccCCchHH-HHHHh--Hhh--c-C--CCHHHHHHHHhhcccc
Q 000887 147 LLSDDDCWSVFVAHAFEGR-DAGTHGNFESTRQRVVEKCKGLPLAA-RALGG--LLR--S-K--QGVDEWRAILDSKIWN 217 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~PLal-~~~~~--~l~--~-~--~~~~~~~~~l~~~~~~ 217 (1237)
+.+.+|..+++..++.... ...-+++..+.+.+++....|-|..+ .++-. .+. + . -+.+...++.+..
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~--- 274 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI--- 274 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH---
Confidence 9999999999998874211 11112222334455666667877443 32211 111 1 1 1233444333321
Q ss_pred cCCCCChhHHHHHHhhcChHHHHHHHhhhccCC--CCcccChHHHHHHH--HHcCCCccCcchhhHHHHHHHHHHHHhhc
Q 000887 218 LQDKTEIPSVLKLSYHHLPSHLKRCFAYCAVLP--KDYEFKEKELVLLW--IAEGLVQQSEDNKQLEDLGSGYFHDLLSR 293 (1237)
Q Consensus 218 ~~~~~~i~~~l~~s~~~L~~~~~~~~~~la~~~--~~~~~~~~~l~~~w--~~~g~~~~~~~~~~~~~~~~~~l~~L~~~ 293 (1237)
-.....-++..||.+++.++..++..- ++..+....+...+ +++.+ + .....+.....++..|...
T Consensus 275 ------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~---~~~~~~~~~~~~l~~l~~~ 344 (365)
T TIGR02928 275 ------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G---VDPLTQRRISDLLNELDML 344 (365)
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C---CCCCcHHHHHHHHHHHHhc
Confidence 123344567888988887777665321 23334444444421 12211 1 1112234566778899999
Q ss_pred Cccccc
Q 000887 294 SLFQKS 299 (1237)
Q Consensus 294 ~ll~~~ 299 (1237)
|++...
T Consensus 345 gli~~~ 350 (365)
T TIGR02928 345 GLVEAE 350 (365)
T ss_pred CCeEEE
Confidence 998863
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.1e-08 Score=99.54 Aligned_cols=101 Identities=28% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCCCccEEEcccccccccccccc-CCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhh-cccccccEE
Q 000887 398 QCKKLRVLSLGSYCITEVPISIG-CLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRI-GNLVNLHYL 475 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L 475 (1237)
+..++|.|+|.+|.|+.+.. ++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..+++.+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 34456777777777777643 43 5677777777777777774 4777777777777777 677776555 357777777
Q ss_pred eccCCCccccCcc--ccccccccccccee
Q 000887 476 NIEGASALRELPL--GMKELKCLRTLTNF 502 (1237)
Q Consensus 476 ~l~~~~~l~~ip~--~~~~L~~L~~L~~~ 502 (1237)
++++| .+..+.. .++.+++|++|++.
T Consensus 94 ~L~~N-~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 94 YLSNN-KISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-T
T ss_pred ECcCC-cCCChHHhHHHHcCCCcceeecc
Confidence 77777 5555532 24455555555553
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.67 E-value=6e-07 Score=100.19 Aligned_cols=252 Identities=15% Similarity=0.124 Sum_probs=127.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-CccCH----HHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-KLEDL----NSVQLELK 85 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~----~~~~~~l~ 85 (1237)
...+.+.++|++|+|||++|+.+++.. ... ..++... .......+..++..+..... -..+. ......+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l-~~~---~~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~ 123 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEM-GVN---IRITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILY 123 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHh-CCC---eEEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHH
Confidence 345678999999999999999998853 211 1122211 11111112222222221110 00000 11122233
Q ss_pred HHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhc--CCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 86 ETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMG--SGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 86 ~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~--~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
..+.+.+..+|+|+..... .+...+ .+.+-|..|+|...+...+. ....+++++++.+|..+++.+.+..
T Consensus 124 ~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 124 PAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred HHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3444445555555542211 000011 22345666777544433221 1246899999999999999988764
Q ss_pred CCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCHHHHHHHHhhcccccCCCCChhHHHHHHhhcChHHHHHHH
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQDKTEIPSVLKLSYHHLPSHLKRCF 243 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~~L~~~~~~~~ 243 (1237)
..... .++++..|++.|+|.|-.+..+...+. .|.............-......+...+..|++..+..+
T Consensus 196 ~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l 265 (328)
T PRK00080 196 LGVEI----DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYL 265 (328)
T ss_pred cCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHH
Confidence 33222 257789999999999965554444322 12211110000000001122334556778888888877
Q ss_pred h-hhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHH-HHhhcCcccc
Q 000887 244 A-YCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFH-DLLSRSLFQK 298 (1237)
Q Consensus 244 ~-~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~~ 298 (1237)
. ....|+++ .+..+.+.... +. + .+.+++.++ .|++.++++.
T Consensus 266 ~~~~~~~~~~-~~~~~~~a~~l------g~--~----~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 266 RTIIEKFGGG-PVGLDTLAAAL------GE--E----RDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHHcCCC-ceeHHHHHHHH------CC--C----cchHHHHhhHHHHHcCCccc
Confidence 6 55666655 45544443321 11 1 123444566 8999999974
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.64 E-value=2.7e-07 Score=96.64 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+.+.|+|++|+|||+||.++++...+. ...+.|+.+..... ... .+.+.++ +.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~---~~~---------------------~~~~~~~-~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQY---FSP---------------------AVLENLE-QQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhh---hhH---------------------HHHhhcc-cCC
Confidence 578999999999999999999865443 33567776531100 000 1111112 335
Q ss_pred EEEEeCCCCCC-hhhHH-HhhccccCC-CCCcEEE-EEeCc---------hhHHHhhcCCCeEeCCCCChhhhHHHHHHH
Q 000887 94 LIVLDDVWSER-YDLWQ-ALKSPFMAG-APGSRII-VTTRS---------MDVALTMGSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 94 LlvlDdv~~~~-~~~~~-~~~~~~~~~-~~~~~il-iTtR~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
+||+||+|... ...|. .+...+... ..|..++ +|++. +.+..++.....+++++++.++.++++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 89999997632 12333 222222221 2355554 55544 345555555678999999999999999988
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
+.......+ +++..-|++++.|-.-++..+-..+
T Consensus 174 a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 174 AYQRGIELS----DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 864432222 6778899999988777666554443
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.64 E-value=9e-07 Score=98.38 Aligned_cols=243 Identities=17% Similarity=0.100 Sum_probs=128.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC------CccCHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC------KLEDLNSVQLEL 84 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l 84 (1237)
..++.+.++|++|+|||+||+++++... .. ...+..........+ ...+..++.... ...+ .+....+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~---~~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l 101 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMG-VN---LKITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRLS-PAVEELL 101 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC-CC---EEEeccchhcCchhH-HHHHHhcccCCEEEEehHhhhC-HHHHHHh
Confidence 3456688999999999999999987532 11 112221111111111 122222221110 0001 1122334
Q ss_pred HHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhc--CCCeEeCCCCChhhhHHHHHHHhc
Q 000887 85 KETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMG--SGKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 85 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~--~~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
...+.+.+..+|+|+..... .+...+ .+.+-|..|+|...+...+. ....+++++++.+|..+++.+.+.
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~-----~~~~~~---~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 102 YPAMEDFRLDIVIGKGPSAR-----SVRLDL---PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred hHHHhhhheeeeeccCcccc-----ceeecC---CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 44555555566666553221 111111 23455667777654433221 124678999999999999998875
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhc------CC--CHHHHHHHHhhcccccCCCCChhHHHHHHhhc
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRS------KQ--GVDEWRAILDSKIWNLQDKTEIPSVLKLSYHH 234 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~------~~--~~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~~ 234 (1237)
..... -.++++..|++.++|.|-.+..++..+.. .. +.+..... ...+...+..
T Consensus 174 ~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~--------------l~~l~~~~~~ 235 (305)
T TIGR00635 174 LLNVE----IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA--------------LEMLMIDELG 235 (305)
T ss_pred HhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH--------------HHHhCCCCCC
Confidence 43222 22667889999999999776555543211 00 11111111 1124455778
Q ss_pred ChHHHHHHHh-hhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHH-HHhhcCcccc
Q 000887 235 LPSHLKRCFA-YCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFH-DLLSRSLFQK 298 (1237)
Q Consensus 235 L~~~~~~~~~-~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~~ 298 (1237)
+++..+..+. .++.++++ .+....+.... |. ....+...++ .|++++++..
T Consensus 236 l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 236 LDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred CCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCccc
Confidence 8888877777 44666543 44443333221 11 1123455577 6999999964
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=4.1e-08 Score=95.62 Aligned_cols=105 Identities=28% Similarity=0.332 Sum_probs=55.6
Q ss_pred CCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhh-cccCCccEEEcCccccCccCCh--hhcccccccE
Q 000887 398 QCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAI-CSLFNLEILILRNCWCLLKLPS--RIGNLVNLHY 474 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~ 474 (1237)
.+.+|++|+|++|.|+.++. +..++.|++|++++|.|.++++.+ ..+++|+.|++++| .+..+-. .+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 67899999999999999975 888999999999999999997655 47999999999998 6665543 3678999999
Q ss_pred EeccCCCccccCccc----ccccccccccceeeec
Q 000887 475 LNIEGASALRELPLG----MKELKCLRTLTNFIVG 505 (1237)
Q Consensus 475 L~l~~~~~l~~ip~~----~~~L~~L~~L~~~~~~ 505 (1237)
|++.+| .+...+.. +..+++|+.|+...+.
T Consensus 118 L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCC-cccchhhHHHHHHHHcChhheeCCEEcc
Confidence 999999 55555532 7788999999765544
No 38
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=2.3e-07 Score=99.32 Aligned_cols=177 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHH---------HHHHHhhccCC----------C
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK---------AILDSIKRSSC----------K 73 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~---------~i~~~l~~~~~----------~ 73 (1237)
.+.+.|+|+.|+|||+|++++.+......+ .++|+............. .+...+..... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 468999999999999999998875433333 455555544432221111 11222222111 1
Q ss_pred ccCHHHHHHHHHHHhc--CCcEEEEEeCCCCCC------hhhHHHhhccccC--CCCCcEEEEEeCchhHHHh-------
Q 000887 74 LEDLNSVQLELKETVF--KKKFLIVLDDVWSER------YDLWQALKSPFMA--GAPGSRIIVTTRSMDVALT------- 136 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~------- 136 (1237)
.....+....+.+.+. +++++||+|++.... ......+...+.. ...+..++++.........
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~ 178 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSP 178 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTST
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCc
Confidence 1122333333333333 245999999995433 1112222222222 2334445555554444332
Q ss_pred -hcCCCeEeCCCCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 137 -MGSGKNYELKLLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 137 -~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
......+.+++|+.+|+++++....... ... +...+..++|++.+||+|..|..
T Consensus 179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 179 LFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 1222459999999999999999876433 111 12366779999999999998864
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=1.5e-07 Score=89.78 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=81.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhccccc----CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTE----AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET 87 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 87 (1237)
+-+++.|+|.+|+|||+++.+++...... .-..++|+.+....+...+...++.+++.........++....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999988754221 13457799998888999999999999998766656777888888888
Q ss_pred hcCCc-EEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCc
Q 000887 88 VFKKK-FLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRS 130 (1237)
Q Consensus 88 l~~~~-~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~ 130 (1237)
+.+.+ .+||+|+++.- ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77654 59999999543 3333334433222 667788887765
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=3.9e-09 Score=115.21 Aligned_cols=98 Identities=35% Similarity=0.568 Sum_probs=50.8
Q ss_pred CCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEecc
Q 000887 399 CKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIE 478 (1237)
Q Consensus 399 ~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 478 (1237)
+-.|..|.|..|.+..+|..++++..|.+|||+.|++..+|..++.|+ |+.|-+++| +++.+|++|+.+..|.+||.+
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhh
Confidence 334444555555555555555555555555555555555555444443 455555554 555555555555555555555
Q ss_pred CCCccccCccccccccccccc
Q 000887 479 GASALRELPLGMKELKCLRTL 499 (1237)
Q Consensus 479 ~~~~l~~ip~~~~~L~~L~~L 499 (1237)
.| .+..+|..++.+.+|+.|
T Consensus 175 ~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 175 KN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hh-hhhhchHHhhhHHHHHHH
Confidence 55 455555555555555544
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=1.7e-08 Score=113.82 Aligned_cols=108 Identities=23% Similarity=0.228 Sum_probs=71.7
Q ss_pred hhhcCCCCCccEEEccccccc-----cccccccCCCCCCeEEccCCCccc-------cchhhcccCCccEEEcCccccCc
Q 000887 393 SDLLPQCKKLRVLSLGSYCIT-----EVPISIGCLKQLRYLNFSRSEIQC-------LPDAICSLFNLEILILRNCWCLL 460 (1237)
Q Consensus 393 ~~~~~~~~~Lr~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~ 460 (1237)
...|..+..|++|+++++.++ .++..+...+.|+.|+++++.+.. ++..+..+.+|++|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 455666777888888888873 355666777788888888876652 34467778888888888884444
Q ss_pred cCChhhccccc---ccEEeccCCCccc-----cCccccccc-ccccccce
Q 000887 461 KLPSRIGNLVN---LHYLNIEGASALR-----ELPLGMKEL-KCLRTLTN 501 (1237)
Q Consensus 461 ~lp~~i~~L~~---L~~L~l~~~~~l~-----~ip~~~~~L-~~L~~L~~ 501 (1237)
..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEc
Confidence 45555665555 8888888873 33 122234444 55666654
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=6.6e-08 Score=112.20 Aligned_cols=105 Identities=33% Similarity=0.451 Sum_probs=93.9
Q ss_pred CCCCCccEEEccccccccccccccCCC-CCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEE
Q 000887 397 PQCKKLRVLSLGSYCITEVPISIGCLK-QLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYL 475 (1237)
Q Consensus 397 ~~~~~Lr~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 475 (1237)
...+.+..|++.+|.++++|+....+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+.+|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 445789999999999999998888875 999999999999999988999999999999998 999999988899999999
Q ss_pred eccCCCccccCcccccccccccccceee
Q 000887 476 NIEGASALRELPLGMKELKCLRTLTNFI 503 (1237)
Q Consensus 476 ~l~~~~~l~~ip~~~~~L~~L~~L~~~~ 503 (1237)
++++| .+..+|..++.+..|++|.+..
T Consensus 192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 192 DLSGN-KISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred eccCC-ccccCchhhhhhhhhhhhhhcC
Confidence 99999 8999998877777788886633
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.50 E-value=2.7e-08 Score=112.23 Aligned_cols=109 Identities=21% Similarity=0.154 Sum_probs=76.1
Q ss_pred hhhhhcCCCCCccEEEcccccccc-------ccccccCCCCCCeEEccCCCcc-ccchhhcccCC---ccEEEcCccccC
Q 000887 391 VLSDLLPQCKKLRVLSLGSYCITE-------VPISIGCLKQLRYLNFSRSEIQ-CLPDAICSLFN---LEILILRNCWCL 459 (1237)
Q Consensus 391 ~~~~~~~~~~~Lr~L~L~~~~i~~-------lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l 459 (1237)
.++..+...+.++.|+++++.+.. ++..+..+++|+.|++++|.+. ..+..+..+.+ |++|++++| .+
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GL 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-cc
Confidence 345567778889999999887763 3455677889999999999887 34555666655 999999998 44
Q ss_pred c-----cCChhhccc-ccccEEeccCCCccc-----cCcccccccccccccce
Q 000887 460 L-----KLPSRIGNL-VNLHYLNIEGASALR-----ELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 460 ~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~ip~~~~~L~~L~~L~~ 501 (1237)
. .++..+..+ .+|+.|++++|. +. .++..+..+++|++|++
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEEC
Confidence 3 233445666 889999999983 44 23334555566666654
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=9.3e-06 Score=95.26 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc----ccCCC--CeEEEEEcCCcCHHHHHHHHHHHhhccC-CCccCHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL----TEAFE--PKAWVCVSDDFDVLRISKAILDSIKRSS-CKLEDLNSVQLELK 85 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~----~~~f~--~~~w~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~ 85 (1237)
..++.|+|++|+|||++++.|..... +...+ .+++|++..-.+...++..|+.++.... .......+....+.
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 36788999999999999999976541 11222 3678888777778888888888884332 22223344444555
Q ss_pred HHhc---CCcEEEEEeCCCCCChhhHHHhhcccc-CCCCCcEEEE--EeCchhHH----HhhcC---CCeEeCCCCChhh
Q 000887 86 ETVF---KKKFLIVLDDVWSERYDLWQALKSPFM-AGAPGSRIIV--TTRSMDVA----LTMGS---GKNYELKLLSDDD 152 (1237)
Q Consensus 86 ~~l~---~~~~LlvlDdv~~~~~~~~~~~~~~~~-~~~~~~~ili--TtR~~~~~----~~~~~---~~~~~l~~l~~~e 152 (1237)
..+. +...+||||+++.-....-+.+...+. ....+++|+| ++.+.... .++.. ...+..++.+.+|
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHH
Confidence 4442 234689999995321111112221111 1123455443 34322221 11111 1246779999999
Q ss_pred hHHHHHHHhcC
Q 000887 153 CWSVFVAHAFE 163 (1237)
Q Consensus 153 a~~l~~~~~~~ 163 (1237)
-.+++..++..
T Consensus 941 L~dILk~RAe~ 951 (1164)
T PTZ00112 941 IEKIIKERLEN 951 (1164)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.9e-08 Score=105.36 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=102.7
Q ss_pred CccceeeeeeecCCCccccC--cCCCCCCcccEEEEcCCCCcc--ccccccCCcccccEEeeccccccccccc--cccCC
Q 000887 942 LPVTLKRLRIEDCSNFKVLT--SECQLPVEVEELTIYGCSNLE--SIAERFHDDACLRSIWISSCENLKSLPK--GLSNL 1015 (1237)
Q Consensus 942 ~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l 1015 (1237)
.+.+|+.+.+.+|+.- ..+ .....+++++.|+++.|-.-. .+-.....+|+|+.|+|+.+ .+..... .-..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 4456666666665421 111 234456778888887753221 22234556777888888773 3332221 12355
Q ss_pred CCCceeeeccCCCcccCCCCCCCCcchhhhhhccccccccCCCCCCCcccEEeccCCCCccccCCC-CCCCCcCceEecC
Q 000887 1016 SHLHEIRIVRCHNLVSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE-GLSTNLTDLEISG 1094 (1237)
Q Consensus 1016 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~ 1094 (1237)
++|+.|.|++|..-. -++..| ...+|+|+.|.+.++..+...... ..+..|++|||++
T Consensus 197 ~~lK~L~l~~CGls~-------------k~V~~~--------~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-------------KDVQWI--------LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhhheEEeccCCCCH-------------HHHHHH--------HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 777777777774210 000010 026788888888888533322222 4577888899998
Q ss_pred CCCcccccccccCCCCCCceEEEcCCCCceec--cCCC--CccccCCCcCeeeecC
Q 000887 1095 DNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSF--PDVG--KGVILPTSLTSITISD 1146 (1237)
Q Consensus 1095 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~--~~~~~~~~L~~L~l~~ 1146 (1237)
|+.+..-.....+.++.|+.|+++.| .+.++ |... .-....++|++|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred Ccccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc
Confidence 88876554445788889999999886 34433 2210 0012445666666665
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=1.1e-08 Score=111.80 Aligned_cols=103 Identities=25% Similarity=0.301 Sum_probs=93.3
Q ss_pred CCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEec
Q 000887 398 QCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNI 477 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 477 (1237)
.+..-...||+.|++.++|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+.| .+..+|..++.|. |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34556778999999999999999999999999999999999999999999999999998 9999999998874 899989
Q ss_pred cCCCccccCcccccccccccccceee
Q 000887 478 EGASALRELPLGMKELKCLRTLTNFI 503 (1237)
Q Consensus 478 ~~~~~l~~ip~~~~~L~~L~~L~~~~ 503 (1237)
++| +++.+|.+++.+..|.+|+...
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhh
Confidence 988 8999999999888888887643
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=1.8e-06 Score=91.38 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=93.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..+.|.|+|.+|+|||++|+.++....+. ....+++++..-.+ .. . .+...+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~-~~~~~~i~~~~~~~------~~--------------~----~~~~~~~~- 90 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER-GKSAIYLPLAELAQ------AD--------------P----EVLEGLEQ- 90 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEeHHHHHH------hH--------------H----HHHhhccc-
Confidence 35689999999999999999988754322 33456665432211 00 0 01111222
Q ss_pred cEEEEEeCCCCCChh-h-HHHhhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSERYD-L-WQALKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~-~-~~~~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
.-+||+||++.-... . ...+...+.. ...+..+|+|++... +..++.....+++.+++++|...+++.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 348999999543221 1 2233322221 123457999988532 122232235789999999999999887
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhH
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 197 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 197 (1237)
.+...... -.+++++.|++.++|.|..+.-+...
T Consensus 171 ~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 171 RAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 65322221 22567788999999999887766443
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=6.8e-06 Score=87.48 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=115.2
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
.+.+..+.+||++|+||||||+.++.. .... |..++...+-.+-.+.++.... .....
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~-~~~~-----f~~~sAv~~gvkdlr~i~e~a~----------------~~~~~ 102 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGT-TNAA-----FEALSAVTSGVKDLREIIEEAR----------------KNRLL 102 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHh-hCCc-----eEEeccccccHHHHHHHHHHHH----------------HHHhc
Confidence 356778899999999999999998873 2222 2333333222222222222110 11223
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEE--eCchhHHH---hhcCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT--TRSMDVAL---TMGSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliT--tR~~~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
+++.+|++|.|..-+..+-+. .++....|.-|+|- |-++.+.. ......++++++|+.+|-.+++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 789999999995533333222 34445667777764 44443221 11334689999999999999998844322
Q ss_pred CCCCC---CCChHHHHHHHHHHccCCchH-HH---HHHhHhhcCC--CHHHHHHHHhhcccccCC----CCChhHHHHHH
Q 000887 165 RDAGT---HGNFESTRQRVVEKCKGLPLA-AR---ALGGLLRSKQ--GVDEWRAILDSKIWNLQD----KTEIPSVLKLS 231 (1237)
Q Consensus 165 ~~~~~---~~~~~~~~~~i~~~~~g~PLa-l~---~~~~~l~~~~--~~~~~~~~l~~~~~~~~~----~~~i~~~l~~s 231 (1237)
..... ..-.+++...+++.++|=..+ +. +++...+... ..+..++.+++....... ...+-++|.-|
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKS 259 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKS 259 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHh
Confidence 22111 112255777888888884433 22 2332222221 245566666654333222 34566778777
Q ss_pred hhcChHHH
Q 000887 232 YHHLPSHL 239 (1237)
Q Consensus 232 ~~~L~~~~ 239 (1237)
...=++++
T Consensus 260 vRGSD~dA 267 (436)
T COG2256 260 VRGSDPDA 267 (436)
T ss_pred hccCCcCH
Confidence 77666554
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=7.4e-07 Score=97.53 Aligned_cols=56 Identities=29% Similarity=0.612 Sum_probs=36.6
Q ss_pred CcccccEEeeccccccccccccccCCCCCceeeeccCCCcccCCCCCCCCcchhhhhhccc
Q 000887 990 DDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVLIEDCD 1050 (1237)
Q Consensus 990 ~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~l~~~~ 1050 (1237)
.+.+++.|++++| .++.+|. -.++|++|.+++|.+++.+|... +.+|+.|.+.+|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs 105 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCP 105 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcc
Confidence 3577888888887 7777773 22468888888888887777532 3334444444443
No 50
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.4e-06 Score=82.05 Aligned_cols=120 Identities=24% Similarity=0.255 Sum_probs=78.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
-+++.|.|+-|+||||++++++++.. ....++|+++.+......... + ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 36899999999999999999887543 334577887655533110000 0 2223333333478
Q ss_pred EEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhh------cCCCeEeCCCCChhhh
Q 000887 93 FLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTM------GSGKNYELKLLSDDDC 153 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~------~~~~~~~l~~l~~~ea 153 (1237)
.+|++|++.. ...|......+....++.+|++|+........- +....+++.||+..|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999944 356666666666656778999999977665321 1124678889987763
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.8e-07 Score=72.61 Aligned_cols=57 Identities=33% Similarity=0.449 Sum_probs=41.4
Q ss_pred CCccEEEcccccccccc-ccccCCCCCCeEEccCCCccccch-hhcccCCccEEEcCcc
Q 000887 400 KKLRVLSLGSYCITEVP-ISIGCLKQLRYLNFSRSEIQCLPD-AICSLFNLEILILRNC 456 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 456 (1237)
++|++|++++|.++.+| ..|..+++|++|++++|.+..+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777775 456777777777777777777754 6777777777777776
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=1.1e-07 Score=95.26 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=80.3
Q ss_pred hcCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccE
Q 000887 395 LLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHY 474 (1237)
Q Consensus 395 ~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 474 (1237)
.+..++.|..|||++|.|+.+.++..-++.+|+|++++|.|..+-. +..|.+|..|||++| .+.++...=.+|-|.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 3456778888888888888888888888888888888888887744 888888888888887 66666654467777888
Q ss_pred EeccCCCccccCcccccccccccccceeee
Q 000887 475 LNIEGASALRELPLGMKELKCLRTLTNFIV 504 (1237)
Q Consensus 475 L~l~~~~~l~~ip~~~~~L~~L~~L~~~~~ 504 (1237)
|.+.+| .++.+ .++++|.+|..|++..+
T Consensus 357 L~La~N-~iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 357 LKLAQN-KIETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred eehhhh-hHhhh-hhhHhhhhheecccccc
Confidence 888877 56555 35667777777766443
No 53
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=8.1e-06 Score=84.72 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+.+.|+|++|+|||+|+..+++.. .+.|++.. ....++...+ .+ -
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~------~~~~i~~~------~~~~~~~~~~---------------------~~--~ 89 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS------DALLIHPN------EIGSDAANAA---------------------AE--G 89 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc------CCEEecHH------HcchHHHHhh---------------------hc--C
Confidence 568999999999999999887632 23345321 1111111111 01 2
Q ss_pred EEEEeCCCCCChhhHHHhhccccC-CCCCcEEEEEeCc---------hhHHHhhcCCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 94 LIVLDDVWSERYDLWQALKSPFMA-GAPGSRIIVTTRS---------MDVALTMGSGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~~~~~~~~~-~~~~~~iliTtR~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
+|++||++.....+ .++...+.. ...|..+|+|++. ++...++....++++++++.++-.+++++.+..
T Consensus 90 ~l~iDDi~~~~~~~-~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 90 PVLIEDIDAGGFDE-TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred eEEEECCCCCCCCH-HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 78889995422111 223322221 2346789999974 233444555678999999999999999988854
Q ss_pred CCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
.....+ +++...|++++.|..-++..+-..+
T Consensus 169 ~~~~l~----~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 169 RQLYVD----PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred cCCCCC----HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332222 6778899999988877776544333
No 54
>PRK08727 hypothetical protein; Validated
Probab=98.29 E-value=8.7e-06 Score=85.45 Aligned_cols=148 Identities=20% Similarity=0.126 Sum_probs=90.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
..+.|+|.+|+|||+||.++++...+..+ .++|+++.+ ....+.. .+. .+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~-~~~y~~~~~------~~~~~~~-----------------~~~-~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGR-SSAYLPLQA------AAGRLRD-----------------ALE-AL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEeHHH------hhhhHHH-----------------HHH-HH-hcCC
Confidence 45999999999999999999875544433 566776322 1111111 111 11 2335
Q ss_pred EEEEeCCCCCCh-hhHH-HhhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHHHh
Q 000887 94 LIVLDDVWSERY-DLWQ-ALKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 94 LlvlDdv~~~~~-~~~~-~~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
+||+||++.... ..+. .+...+.. ...+..||+|++... +..++.....+++++++.++-.+++++.+
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 899999953211 1122 22222211 234667999998542 22233344689999999999999999877
Q ss_pred cCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 162 FEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
....-.. .+++...|++.++|-.-++
T Consensus 176 ~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 5432222 2667788888888765554
No 55
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.29 E-value=1e-05 Score=83.78 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=97.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
...+.|+|..|+|||.|..++++...+... ..++|++ ..+....++..+.. ... ..+++.++ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~----~~~~~~~~-~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD-----GEI----EEFKDRLR-S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSH----HHHHHHHC-T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc-----ccc----hhhhhhhh-c
Confidence 445789999999999999999986543322 2466774 34455555555533 112 23334444 4
Q ss_pred cEEEEEeCCCCCCh-hhHHH-hhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSERY-DLWQA-LKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~-~~~~~-~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
-=+|++||++.-.. ..|.. +...+.. ...|.+||+|++... ...++....++++++.+.++..+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 45778899955322 12222 2222221 135778999996442 333445557899999999999999999
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhH
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 197 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 197 (1237)
.+.......+ ++++.-|++.+.+..-.|..+-..
T Consensus 178 ~a~~~~~~l~----~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIELP----EEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT--S-----HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCc----HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 8865444333 677788888887766665544433
No 56
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=1.4e-05 Score=84.10 Aligned_cols=156 Identities=16% Similarity=0.117 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.+.+.|+|++|+|||+|+.++++...+. ...+.|+.+..... ...+.. +.+.. -
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~-~ 98 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ-L 98 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-C
Confidence 3578999999999999999988754332 23466776532110 001111 11111 2
Q ss_pred EEEEEeCCCCCCh-hhHHH-hhccccCC-CCC-cEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 93 FLIVLDDVWSERY-DLWQA-LKSPFMAG-APG-SRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 93 ~LlvlDdv~~~~~-~~~~~-~~~~~~~~-~~~-~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
-+||+||+..... ..|+. +...+... ..| .++|+||+... +..++....++++++++.++-.+++++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 3788999954221 22322 22222221 123 47999998552 333445557899999999999999988
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
++...+-.. .+++..-|++++.|-.-++..+-..+
T Consensus 179 ~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 179 RARLRGFEL----PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 664432222 26788889999988776665544443
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=2.8e-07 Score=92.49 Aligned_cols=110 Identities=25% Similarity=0.243 Sum_probs=95.2
Q ss_pred chhhhhcCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhccc
Q 000887 390 MVLSDLLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNL 469 (1237)
Q Consensus 390 ~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 469 (1237)
...++...-.+.+|+|++++|.|..+-. +..+.+|..|||++|.+.++...-.+|-+.+.|.|++| .+..+.. +++|
T Consensus 297 ~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSG-L~KL 373 (490)
T KOG1259|consen 297 TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSG-LRKL 373 (490)
T ss_pred hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhh-hHhh
Confidence 4556677788999999999999998876 88999999999999999988777889999999999998 8877765 8999
Q ss_pred ccccEEeccCCCccccCcc--cccccccccccceee
Q 000887 470 VNLHYLNIEGASALRELPL--GMKELKCLRTLTNFI 503 (1237)
Q Consensus 470 ~~L~~L~l~~~~~l~~ip~--~~~~L~~L~~L~~~~ 503 (1237)
.+|..||+++| +++.+-. .|++|+.|+++.+.+
T Consensus 374 YSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 374 YSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhheecccccc-chhhHHHhcccccccHHHHHhhcC
Confidence 99999999999 6777653 499999999987643
No 58
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=3.2e-05 Score=78.76 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccccc--------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTE--------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~--------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|+.|+|||++|+.++...... .++...++.....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~------------------- 74 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ------------------- 74 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-------------------
Confidence 3678999999999999999987754321 1111222221111
Q ss_pred CccCHHHHHHHHHHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCC
Q 000887 73 KLEDLNSVQLELKET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELK 146 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~ 146 (1237)
....++....+... ..+.+-++|+||++.-.......+...+-...+.+.+|++|++. .+...+ .....+++.
T Consensus 75 -~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 75 -SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred -cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 11222222222111 12456789999996554455556666665545566777777654 222222 223589999
Q ss_pred CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCch
Q 000887 147 LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL 189 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 189 (1237)
+++.+|..+.+.+.. . .++++..|++.++|.|.
T Consensus 154 ~~~~~~~~~~l~~~g------i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 154 PLSEEALLQWLIRQG------I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred CCCHHHHHHHHHHcC------C----CHHHHHHHHHHcCCCcc
Confidence 999999999887761 1 15678999999999885
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=1.3e-05 Score=84.58 Aligned_cols=153 Identities=24% Similarity=0.171 Sum_probs=91.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..+.+.|+|..|+|||+||.++++...+... .+++++..... .. + ... ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhH------HH----H------------------hhc-cc
Confidence 3467899999999999999998875433332 35566543321 00 0 011 23
Q ss_pred cEEEEEeCCCCCChhhHHHhhccccCC-CCCc-EEEEEeCchhHHH--------hhcCCCeEeCCCCChhhhHHHHHHHh
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPFMAG-APGS-RIIVTTRSMDVAL--------TMGSGKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~~~~-~~~~-~iliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
.-+||+||++.........+...+... ..+. .+|+|++...... ++.....++++++++++-.+++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 346888999543222223333333221 2233 4777776543211 22233688999999988777777654
Q ss_pred cCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 162 FEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
...+... .+++.+.+++...|.+..+..+...+
T Consensus 171 ~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3322222 26788899999999999887766554
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.2e-07 Score=97.64 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCCCCCccEEEEeecCCCCCCCCCCCCCCCCccEEEEccCCCCCc--CCCCCCccccceeEecCCCCceeecccccCC-C
Q 000887 578 LKPHSNIKRLEIHSYGGTRFPSWVGDPSFSNVAVLILKNCRRSTS--LPSLGQLCSLKDLTIVGMSELKSIGSEIYGE-G 654 (1237)
Q Consensus 578 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~-~ 654 (1237)
+..+++|+.|++..+.+.... -.....+..|+.|+|++|..+.. .+..+.||.|+.|.+..+ ++..+..--.+. .
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLD 295 (505)
T ss_pred HHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchh
Confidence 344555555655554321111 11112466788888887775443 246777888888888764 333332100000 0
Q ss_pred cccCCcccceeecccc
Q 000887 655 CSKPFQSLQTLYFEDL 670 (1237)
Q Consensus 655 ~~~~~~~L~~L~l~~~ 670 (1237)
....||+|++|.+..+
T Consensus 296 kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISEN 311 (505)
T ss_pred hhcccccceeeecccC
Confidence 1133556666655554
No 61
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=5.9e-05 Score=93.89 Aligned_cols=211 Identities=17% Similarity=0.139 Sum_probs=120.8
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCC------CCcEEEEEeCch--hHHHhhcCCCeEeCCCCChhhhHHHHHHHh
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGA------PGSRIIVTTRSM--DVALTMGSGKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~------~~~~iliTtR~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
.++.++|+||+...+....+-+........ ...-.+.|.+.. .+.........+.|.||+..+...+.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 469999999995443333322221111111 122233344433 112222333689999999999999999887
Q ss_pred cCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcC------CCHHHHHHHHhhcccccCCCCChhHHHHHHhhcC
Q 000887 162 FEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSK------QGVDEWRAILDSKIWNLQDKTEIPSVLKLSYHHL 235 (1237)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~~L 235 (1237)
...... ..+.+..|.++..|+|+-+..+-..+.+. .+...|..-.... .....-+.+-..+..-.+.|
T Consensus 233 ~~~~~~-----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~~~vv~~l~~rl~kL 306 (849)
T COG3899 233 GCTKLL-----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATTDAVVEFLAARLQKL 306 (849)
T ss_pred CCcccc-----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhhHHHHHHHHHHHhcC
Confidence 542221 14568899999999999999988888764 2234443222110 01111122445688889999
Q ss_pred hHHHHHHHhhhccCCCCcccChHHHHHHHHHcCCCccCcchhhHHHHHHHHHHHHhhcCcccccC------CCCCc--c-
Q 000887 236 PSHLKRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSS------NTESK--Y- 306 (1237)
Q Consensus 236 ~~~~~~~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~------~~~~~--~- 306 (1237)
|...|+++...|++-..++ .+.+...+.. ...+++......| ..+++.+.. ..... |
T Consensus 307 ~~~t~~Vl~~AA~iG~~F~--l~~La~l~~~-----------~~~~~a~~l~~al-~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 307 PGTTREVLKAAACIGNRFD--LDTLAALAED-----------SPALEAAALLDAL-QEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred CHHHHHHHHHHHHhCccCC--HHHHHHHHhh-----------chHHHHHHHHHHh-HhhceeccccccccccccchhhHH
Confidence 9999999999999976655 4444443311 1122333333443 344444311 11111 2
Q ss_pred hhhhHHHHHHhhhc
Q 000887 307 VMHDLVHDLAQWAS 320 (1237)
Q Consensus 307 ~~h~lv~~~~~~~~ 320 (1237)
..|+.||+.+-...
T Consensus 373 F~H~~vqqaaY~~i 386 (849)
T COG3899 373 FLHDRVQQAAYNLI 386 (849)
T ss_pred hhHHHHHHHHhccC
Confidence 46999999886543
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.18 E-value=2.5e-05 Score=86.79 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCC-CeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
++.+.+.++|++|+|||++|..+++......|. .++-++.++......+ ++....+....... -.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~~~~~~~-------------~~ 97 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV-RNKIKMFAQKKVTL-------------PP 97 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH-HHHHHHHHhccccC-------------CC
Confidence 344557799999999999999998754333332 2222333322222211 22221111100000 01
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
++.-++|+|+++.-.......+...+-..+..+++++++... .+...+ .....+++.+++.++..+.+...+...+..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 346799999996654444444544443334567777766443 221111 122578999999999999998877543332
Q ss_pred CCCCChHHHHHHHHHHccCCchH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
.. ++.+..|++.++|-.-.
T Consensus 178 i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 178 YV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CC----HHHHHHHHHHcCCCHHH
Confidence 22 56788999999986543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=3.6e-06 Score=92.21 Aligned_cols=70 Identities=29% Similarity=0.550 Sum_probs=44.4
Q ss_pred ccceeEEEEecCCCcccccCCCCCccceeeeeeecCCCccccCcCCCCCCcccEEEEcCCCCccccccccCCcccccEEe
Q 000887 919 YLDLESLFVYRCPSLTCLWSGGRLPVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIW 998 (1237)
Q Consensus 919 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~ 998 (1237)
+.+++.|++++| .++.+| ..+++|+.|.+.+|.+++.+|... +++|+.|++++|..+..+|. +|+.|+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred hcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 356777888877 666666 355667777777777776665422 35677777777766555543 355555
Q ss_pred ec
Q 000887 999 IS 1000 (1237)
Q Consensus 999 l~ 1000 (1237)
+.
T Consensus 119 L~ 120 (426)
T PRK15386 119 IK 120 (426)
T ss_pred eC
Confidence 54
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=1e-06 Score=102.30 Aligned_cols=103 Identities=27% Similarity=0.361 Sum_probs=91.1
Q ss_pred cCCC-CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccE
Q 000887 396 LPQC-KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHY 474 (1237)
Q Consensus 396 ~~~~-~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 474 (1237)
.... .+|+.|++++|.+..+|..+..+++|+.|++++|.+.++|...+.+.+|+.|++++| .+..+|..++.+.+|++
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEE 213 (394)
T ss_pred cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhh
Confidence 3445 399999999999999998899999999999999999999998889999999999999 99999998889999999
Q ss_pred EeccCCCccccCcccccccccccccc
Q 000887 475 LNIEGASALRELPLGMKELKCLRTLT 500 (1237)
Q Consensus 475 L~l~~~~~l~~ip~~~~~L~~L~~L~ 500 (1237)
|.+++| .+..++..++++.++..+.
T Consensus 214 l~~~~N-~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 214 LDLSNN-SIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhcCC-cceecchhhhhcccccccc
Confidence 999998 4566777777777777664
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.1e-06 Score=68.32 Aligned_cols=57 Identities=33% Similarity=0.522 Sum_probs=51.4
Q ss_pred CCCCeEEccCCCccccch-hhcccCCccEEEcCccccCccCCh-hhcccccccEEeccCC
Q 000887 423 KQLRYLNFSRSEIQCLPD-AICSLFNLEILILRNCWCLLKLPS-RIGNLVNLHYLNIEGA 480 (1237)
Q Consensus 423 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 480 (1237)
++|++|++++|.+..+|. .|.++++|++|++++| .+..+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 579999999999999986 8899999999999998 7777765 5799999999999998
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=4.4e-05 Score=88.02 Aligned_cols=169 Identities=10% Similarity=0.082 Sum_probs=103.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccccc-CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.-+.|+|..|+|||+|+.++++..... .-..+++++ ..++...+...+.... +....+++.++. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-C
Confidence 458999999999999999988744322 222355664 3455666666554311 122234444443 4
Q ss_pred EEEEEeCCCCCC--hhhHHHhhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHHH
Q 000887 93 FLIVLDDVWSER--YDLWQALKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 93 ~LlvlDdv~~~~--~~~~~~~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
-+||+||+.... ....+.+...+.. ...|..||+|+.... +..++...-++.+++++.++..+++++.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 478889995422 1112223332222 133456888876432 2233444567889999999999999998
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
+...+.. ..-.++++..|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 7543211 12236788999999999998887665443
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.1e-05 Score=84.53 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-....+..+...+-..+.++++|++|.+. .+...+ .....+++.+++.+|..+.+...+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 356799999996554445555655555445566667666543 333222 223689999999999999988866433221
Q ss_pred CCCCChHHHHHHHHHHccCCchH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
. .++++..|++.++|.|..
T Consensus 198 i----~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 T----DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred C----CHHHHHHHHHHcCCCHHH
Confidence 2 256788899999998754
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.9e-06 Score=102.79 Aligned_cols=93 Identities=26% Similarity=0.376 Sum_probs=83.1
Q ss_pred CccEEEccccccc-cccccccCCCCCCeEEccCCCcc-ccchhhcccCCccEEEcCccccCccCChhhcccccccEEecc
Q 000887 401 KLRVLSLGSYCIT-EVPISIGCLKQLRYLNFSRSEIQ-CLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIE 478 (1237)
Q Consensus 401 ~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 478 (1237)
.++.|+|++|.+. .+|..++++++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 67889999999999999999998 789999999999999999996667899999999999999999
Q ss_pred CCCccccCccccccc
Q 000887 479 GASALRELPLGMKEL 493 (1237)
Q Consensus 479 ~~~~l~~ip~~~~~L 493 (1237)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 996666888877643
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00023 Score=79.18 Aligned_cols=172 Identities=14% Similarity=0.119 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCC-eEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC--C
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK--K 91 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~ 91 (1237)
-+.|+|.+|+|||+.++.++.......-.. +++|++....+..+++..++.+++..........+....+.+.+.. +
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 489999999999999999998654333333 7899999999999999999999975555556667777777777754 7
Q ss_pred cEEEEEeCCCCCChhhHHHhhccccCCC-CCcE--EEEEeCchhHHHhhcC-------CCeEeCCCCChhhhHHHHHHHh
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPFMAGA-PGSR--IIVTTRSMDVALTMGS-------GKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~~~~~-~~~~--iliTtR~~~~~~~~~~-------~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
.+++|+|+++.-.....+.+-..+.... ..++ |+..+-+..+...+.. ...+..++-+.+|-.+++..++
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 8999999994311110011212222211 1333 4444444433222211 1347788999999999998887
Q ss_pred cCCC-CCCCCCChHHHHHHHHHHccC
Q 000887 162 FEGR-DAGTHGNFESTRQRVVEKCKG 186 (1237)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~~i~~~~~g 186 (1237)
...- ....++..-+.+..++..-+|
T Consensus 204 ~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 204 EEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HhhccCCCcCccHHHHHHHHHHHcCc
Confidence 4322 222233333444444444444
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00027 Score=82.23 Aligned_cols=154 Identities=15% Similarity=0.131 Sum_probs=94.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-c-------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-E-------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|+.|+||||+|+.++....- . .|..++.++....
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------------------- 97 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------------------- 97 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc-------------------
Confidence 467799999999999999998775321 1 1111222222111
Q ss_pred CccCHHHHHHHHHHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHh-hcCCCeEeCC
Q 000887 73 KLEDLNSVQLELKET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALT-MGSGKNYELK 146 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~ 146 (1237)
..+++.+..+... ..++.-++|+|+|+.-.......+...+-....+.++|++|.+.. +... ......+++.
T Consensus 98 --~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFk 175 (702)
T PRK14960 98 --TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175 (702)
T ss_pred --CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeecc
Confidence 1233332222211 134667899999965544555566655554455677777776542 2222 2233689999
Q ss_pred CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 147 LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
+++.++..+.+...+...+... ..+++..|++.++|-+..+
T Consensus 176 pLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 9999999999988775433222 2667889999999977543
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=8.4e-05 Score=86.01 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=96.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCC-eEEEEEcCCcCHHHHHHHHH-HHhhccCCCccCHHHHHHHHHHH--
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEP-KAWVCVSDDFDVLRISKAIL-DSIKRSSCKLEDLNSVQLELKET-- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~-~~w~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~l~~~-- 87 (1237)
.+.+.++|+.|+||||+|+.++..... ..... --+..+....+...+....- ............++++...+...
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 457889999999999999998875421 11100 00111111111111100000 00000000112233333332221
Q ss_pred --hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE-EeCchhHHHhhc-CCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 88 --VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVALTMG-SGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 88 --l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili-TtR~~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
..+++-++|+|+++.-....+..+...+....+.+.+|+ |++...+...+. ....+++.+++.+|..+.+...+..
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 234677899999976555666677666655455666554 555444443332 2357899999999999999988754
Q ss_pred CCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
.+... ..+++..|++.++|.+--+
T Consensus 203 egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 203 ENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred cCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 33222 2567788999999977443
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.10 E-value=4.5e-05 Score=87.89 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=89.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH-hc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET-VF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~ 89 (1237)
+..+.+.++|++|+||||+|+.+++.. ...| +.++.... .... .+.+.. ..... ..
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~-~~~~---~~l~a~~~-~~~~-ir~ii~-----------------~~~~~~~~ 90 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGAT-DAPF---EALSAVTS-GVKD-LREVIE-----------------EARQRRSA 90 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCE---EEEecccc-cHHH-HHHHHH-----------------HHHHhhhc
Confidence 345578899999999999999988743 2111 22222111 1111 111111 11111 13
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEE--eCchhHH--Hh-hcCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT--TRSMDVA--LT-MGSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliT--tR~~~~~--~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
+++.+|++|+++.-.....+.+...+. .+..++|. |.+.... .. ......+.+.+++.++..+++.+.+...
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 578899999997654444444443332 24445543 3333211 11 1223578999999999999998865321
Q ss_pred CCCCCCCChHHHHHHHHHHccCCchHHHHHH
Q 000887 165 RDAGTHGNFESTRQRVVEKCKGLPLAARALG 195 (1237)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 195 (1237)
.... ..-..++...|++.++|-+..+..+.
T Consensus 168 ~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 168 ERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1111 12236678899999999987765443
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=3.1e-05 Score=81.28 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=94.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
...+.|+|..|+|||.||.++++..... -..++|++..+ +... .. .+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 3678999999999999999988744332 24577876422 1111 01 1222233333
Q ss_pred EEEEEeCCCCCC-hhhHHH-hhccccC-CCCCcEEEEEeCchhH---------HHhhcCCCeEeCCCCChhhhHHHHHHH
Q 000887 93 FLIVLDDVWSER-YDLWQA-LKSPFMA-GAPGSRIIVTTRSMDV---------ALTMGSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 93 ~LlvlDdv~~~~-~~~~~~-~~~~~~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
+||+||+.... ...|.. +...+.. ...|..+|+|++.... ..++....++++++++.++-.++++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 67889995321 123322 3333322 2346789999885432 122333467899999999999999866
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHh
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 198 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 198 (1237)
+.......+ +++..-|++.+.|-.-++..+-..+
T Consensus 179 a~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLHLT----DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 643322121 5778888888888776665554444
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.08 E-value=8.4e-05 Score=84.28 Aligned_cols=178 Identities=18% Similarity=0.117 Sum_probs=95.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCC-CeEEEEEcCCcCH--HHHHH--HHHHHhhcc-CCCccCHHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSDDFDV--LRISK--AILDSIKRS-SCKLEDLNSVQLELK 85 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~-~~~w~~~~~~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~l~ 85 (1237)
..+.+.++|++|+|||++|+++++......+. ..+++++.+-... ..+.. .....++.. .......+.....+.
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLK 114 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHH
Confidence 44568899999999999999988754433322 2345554321100 00000 000000000 000011122221121
Q ss_pred HHh-----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhh-cCCCeEeCCCCChhhhHHHHH
Q 000887 86 ETV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTM-GSGKNYELKLLSDDDCWSVFV 158 (1237)
Q Consensus 86 ~~l-----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~ 158 (1237)
... ...+-+||+||++.-.......+...+......+++|+|+..+. +...+ .....+++.+++.++..+++.
T Consensus 115 ~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 115 EYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred HHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHH
Confidence 111 13455899999955433333344444433345677888775432 22222 222578899999999999998
Q ss_pred HHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 159 AHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
..+...+... ..++++.+++.++|.+-.+..
T Consensus 195 ~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 195 SIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred HHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 8764333222 267888999999987666543
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.4e-08 Score=96.34 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCcccEEEEcCCCCccccccccCCcccccEEeecccccccccc--ccccCCCCCceeeeccCCCcccCCCCCCCCcchhh
Q 000887 967 PVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLP--KGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDV 1044 (1237)
Q Consensus 967 ~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l 1044 (1237)
+.+|+.|.+.+...-..+...+..-.+|+.|+|+.|..+++.. -.+.+|+.|..|+++.|...++......
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V------- 281 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV------- 281 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH-------
Confidence 3455555555554444444445555677777777777776532 2456777777777777754443211100
Q ss_pred hhhccccccccCCCCCCCcccEEeccCCCCccccCCC------CCCCCcCceEecCCCCcccccccccCCCCCCceEEEc
Q 000887 1045 LIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE------GLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYID 1118 (1237)
Q Consensus 1045 ~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 1118 (1237)
. .--+.|..|+++||.. .+... ..+++|.+||+++|..++.-....|-.++.|++|.++
T Consensus 282 --~-----------hise~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 282 --A-----------HISETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred --h-----------hhchhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 0 0124566666666642 11111 2245555555555555433222233445555555555
Q ss_pred CC
Q 000887 1119 GC 1120 (1237)
Q Consensus 1119 ~c 1120 (1237)
.|
T Consensus 347 RC 348 (419)
T KOG2120|consen 347 RC 348 (419)
T ss_pred hh
Confidence 55
No 76
>PRK04195 replication factor C large subunit; Provisional
Probab=98.07 E-value=0.0003 Score=82.88 Aligned_cols=222 Identities=17% Similarity=0.130 Sum_probs=121.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.+.+.|+|++|+|||++|.++++.. .++ ++-+++++..+...+ ..++....... .....++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~-~ielnasd~r~~~~i-~~~i~~~~~~~--------------sl~~~~~ 99 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWE-VIELNASDQRTADVI-ERVAGEAATSG--------------SLFGARR 99 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCC-EEEEcccccccHHHH-HHHHHHhhccC--------------cccCCCC
Confidence 6789999999999999999998753 122 444555444333222 22222221110 0011367
Q ss_pred EEEEEeCCCCCCh----hhHHHhhccccCCCCCcEEEEEeCchh-HHH-hh-cCCCeEeCCCCChhhhHHHHHHHhcCCC
Q 000887 93 FLIVLDDVWSERY----DLWQALKSPFMAGAPGSRIIVTTRSMD-VAL-TM-GSGKNYELKLLSDDDCWSVFVAHAFEGR 165 (1237)
Q Consensus 93 ~LlvlDdv~~~~~----~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~-~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 165 (1237)
-+||+|+++.-.. ....++...+. ..+..||+|+.+.. ... .+ .....+++.+++.++....+...+...+
T Consensus 100 kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 100 KLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred eEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 8999999965321 22344443333 23344666664332 111 11 2235789999999999999888775433
Q ss_pred CCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcC-C--CHHHHHHHHhhcccccCCCCChhHHHHHHhh-cChHHHHH
Q 000887 166 DAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSK-Q--GVDEWRAILDSKIWNLQDKTEIPSVLKLSYH-HLPSHLKR 241 (1237)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~--~~~~~~~~l~~~~~~~~~~~~i~~~l~~s~~-~L~~~~~~ 241 (1237)
... ..++...|++.++|-.-.+......+... . +.+....... ......++.++..-+. .-......
T Consensus 178 i~i----~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-----~d~~~~if~~l~~i~~~k~~~~a~~ 248 (482)
T PRK04195 178 IEC----DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-----RDREESIFDALDAVFKARNADQALE 248 (482)
T ss_pred CCC----CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----CCCCCCHHHHHHHHHCCCCHHHHHH
Confidence 222 25778999999998666544333333322 1 1233322221 1113567777776665 33333433
Q ss_pred HHhhhccCCCCcccChHHHHHHHHHcCCCcc
Q 000887 242 CFAYCAVLPKDYEFKEKELVLLWIAEGLVQQ 272 (1237)
Q Consensus 242 ~~~~la~~~~~~~~~~~~l~~~w~~~g~~~~ 272 (1237)
.+.. ..++. ..+..|+.+.+...
T Consensus 249 ~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 249 ASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHc-------ccCCH-HHHHHHHHhccccc
Confidence 3322 12333 34667999988764
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.6e-08 Score=98.18 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=91.7
Q ss_pred cCCcccccEEeeccccccccccccccCCCCCceeeeccCCCcccCCCCCCCCcchhhhhhccccccccCCCCCCCcccEE
Q 000887 988 FHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLREL 1067 (1237)
Q Consensus 988 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L 1067 (1237)
+..+.+|+.|.|.+..--..+...+..=.+|+.|++++|..++....... +.+|+.|.+|
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--------------------~~scs~L~~L 265 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL--------------------LSSCSRLDEL 265 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH--------------------HHhhhhHhhc
Confidence 44456666666666443334444555556677777777766654322110 1367788888
Q ss_pred eccCCCCccccCCC---CCCCCcCceEecCCCCc--ccccccccCCCCCCceEEEcCCCCceeccCCCCccccCCCcCee
Q 000887 1068 ALSECPGIVVFPEE---GLSTNLTDLEISGDNMY--KPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSI 1142 (1237)
Q Consensus 1068 ~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L 1142 (1237)
+++-|......... ...++|+.|.++||... ..-.+.....|++|.+|++++|..++. ....++..++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheee
Confidence 88888543322111 23568888888887543 111121235688888888888766553 112233355667777
Q ss_pred eecCCCCccccCcccCCCCCCCCeeeecCC
Q 000887 1143 TISDFPKLKRLSSKGFQYLVSLEHLSVFSC 1172 (1237)
Q Consensus 1143 ~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 1172 (1237)
.++.|-.+.--..-.+...|+|.+|++.+|
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 777764332111123445666777777665
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.0001 Score=85.79 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh---
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV--- 88 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 88 (1237)
...+.++|++|+||||+|+.+++... ...++..+|.+.+.. .+......-...+... .....++... +.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~~~--~~~~vd~iR~-l~~~~~~~ 111 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEIDAA--SNNSVEDVRD-LREKVLLA 111 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEeccc--ccCCHHHHHH-HHHHHhhc
Confidence 35669999999999999999887542 122222223221000 0000000000000000 1112222222 22211
Q ss_pred --cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 89 --FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 89 --~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
.+++-++|+|+++......+..+...+-....++.+|+++... .+...+ .....+++.+++.++..+.+...+...
T Consensus 112 p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 112 PLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred cccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 2466789999997655555666666665544555655555433 332222 223589999999999999998877543
Q ss_pred CCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 165 RDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
+... .++++..|++.++|.+--+
T Consensus 192 gi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 192 GREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CCCC----CHHHHHHHHHHcCCCHHHH
Confidence 3222 2677899999999988644
No 79
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00023 Score=83.71 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=96.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcCHHHHHHH-HHHHhhccCCCccCHHHHHHHHHHH---
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFDVLRISKA-ILDSIKRSSCKLEDLNSVQLELKET--- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~--- 87 (1237)
...+.++|..|+||||+|+.++.... ....+. ..++...+...+... ..+.+..........++....+...
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~ 114 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA 114 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhc
Confidence 45668999999999999999877542 111110 011111111111000 0000000000112223333222221
Q ss_pred -hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhH-HHhh-cCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 88 -VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV-ALTM-GSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 88 -l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~-~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
..++.-++|+|+++.-+...+..+...+-....++++|+||++..- ...+ .....+.+..++.++..+.+.+.+...
T Consensus 115 P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc
Confidence 1235568999999665555566666655544567887777776532 2222 122579999999999999998876543
Q ss_pred CCCCCCCChHHHHHHHHHHccCCc-hHHHHH
Q 000887 165 RDAGTHGNFESTRQRVVEKCKGLP-LAARAL 194 (1237)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 194 (1237)
.... ..+....|++.++|.. -|+.++
T Consensus 195 gI~i----d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 195 RIAF----EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 2677889999998855 455553
No 80
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.2e-06 Score=59.90 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=19.8
Q ss_pred CccEEEccccccccccccccCCCCCCeEEccCCCcccc
Q 000887 401 KLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCL 438 (1237)
Q Consensus 401 ~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l 438 (1237)
+|++|++++|.|+.+|..+++|++|++|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555555555555555555555555544
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00022 Score=82.35 Aligned_cols=164 Identities=17% Similarity=0.117 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC--------------------CCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA--------------------FEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~--------------------f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|++|+||||+|+.+++...... +..++.++.........+. .+......
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~--- 111 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGY--- 111 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhh---
Confidence 35678999999999999999887532110 1112233222121121111 11111100
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCCh
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSD 150 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~ 150 (1237)
.-..+++-++|+|+++.-.....+.+...+-..+....+|++|.+ ..+...+ .....+++.+++.
T Consensus 112 -------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~ 178 (472)
T PRK14962 112 -------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISD 178 (472)
T ss_pred -------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccH
Confidence 001246679999999543333444455444433344544444433 3333332 2235889999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccC-CchHHHHHHhH
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKG-LPLAARALGGL 197 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~~~ 197 (1237)
++....+...+....... .++++..|++.++| .+.|+..+...
T Consensus 179 ~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999888774332222 25678889998765 56677666543
No 82
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.00 E-value=0.00015 Score=76.07 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=112.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcc-ccc----CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHH
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLEL 84 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~-~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 84 (1237)
....+.+.|+|.+|.|||+++++++... ... .--.|+.+.....++...++..|+.+++.+........+.....
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 3567789999999999999999987633 111 11147788888889999999999999998876666666666666
Q ss_pred HHHhcC-CcEEEEEeCCCCC---ChhhHH---HhhccccCCCCCcEEEEEeCchhHHHhh-----cCCCeEeCCCCChhh
Q 000887 85 KETVFK-KKFLIVLDDVWSE---RYDLWQ---ALKSPFMAGAPGSRIIVTTRSMDVALTM-----GSGKNYELKLLSDDD 152 (1237)
Q Consensus 85 ~~~l~~-~~~LlvlDdv~~~---~~~~~~---~~~~~~~~~~~~~~iliTtR~~~~~~~~-----~~~~~~~l~~l~~~e 152 (1237)
.+.++. +.-+||+|++.+. ....-. .....+...-.=+-|.|-|++.--+... .....+.++....++
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDE 217 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCc
Confidence 666665 5678999999441 011111 1222222222334566777654332211 112467788777655
Q ss_pred h-HHHHHHHhcCCC-CCCCCCChHHHHHHHHHHccCCchHH
Q 000887 153 C-WSVFVAHAFEGR-DAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 153 a-~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
. ..|+......-. .....-..++.++.|.+.++|+.=-+
T Consensus 218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 4 444433321111 11111234788999999999976443
No 83
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.00 E-value=9.6e-06 Score=84.75 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC--cCHHHHHHHHHHHhhccCCCccCHH------HHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILDSIKRSSCKLEDLN------SVQLELK 85 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~ 85 (1237)
..++|.|++|+|||||++++++.....+|+.++|+.+... .++.++++.+...+-.......... .......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998665558998889987666 6888999888333322211111111 1111122
Q ss_pred HH-hcCCcEEEEEeCCC
Q 000887 86 ET-VFKKKFLIVLDDVW 101 (1237)
Q Consensus 86 ~~-l~~~~~LlvlDdv~ 101 (1237)
.+ -.++++++++|++.
T Consensus 97 ~~~~~G~~vll~iDei~ 113 (249)
T cd01128 97 RLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHCCCCEEEEEECHH
Confidence 11 24689999999993
No 84
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=97.73 Aligned_cols=97 Identities=22% Similarity=0.431 Sum_probs=84.0
Q ss_pred hhhhhcCCCCCccEEEccccccc-cccccccCCCCCCeEEccCCCcc-ccchhhcccCCccEEEcCccccCccCChhhcc
Q 000887 391 VLSDLLPQCKKLRVLSLGSYCIT-EVPISIGCLKQLRYLNFSRSEIQ-CLPDAICSLFNLEILILRNCWCLLKLPSRIGN 468 (1237)
Q Consensus 391 ~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 468 (1237)
.+|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 45666889999999999999997 78989999999999999999998 78999999999999999999666799999875
Q ss_pred -cccccEEeccCCCccccCc
Q 000887 469 -LVNLHYLNIEGASALRELP 487 (1237)
Q Consensus 469 -L~~L~~L~l~~~~~l~~ip 487 (1237)
+.++..+++.+|..+...|
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccccCceEEecCCccccCCC
Confidence 4678899999885544444
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00012 Score=84.87 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCC---CCeEEEEEcCCcCHHHHHHH-HHHHhhccCCCccCHHHHHHHHHHH-
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAF---EPKAWVCVSDDFDVLRISKA-ILDSIKRSSCKLEDLNSVQLELKET- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f---~~~~w~~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~- 87 (1237)
...+.++|..|+||||+|+.++....-..- .+...-.++...+...+... ..+.+.........++++...+...
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~ 117 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAV 117 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHH
Confidence 356789999999999999998875421100 00000001111000000000 0000000101112334433333222
Q ss_pred ---hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcE-EEEEeCchhHHHhhcC-CCeEeCCCCChhhhHHHHHHHhc
Q 000887 88 ---VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSR-IIVTTRSMDVALTMGS-GKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 88 ---l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iliTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
..++.-++|+|+++.-+......+...+-.-..+++ |++||....+...+.+ ...+.+..++.++..+.+.+.+.
T Consensus 118 ~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 118 YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred hchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 134667999999976555566666665544445566 4555554455433322 25789999999999999887764
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
..+.. ...+....|++.++|.|...
T Consensus 198 ~Egi~----~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 198 EEGIA----HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred HcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 32221 12556788999999988643
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=6.3e-05 Score=84.93 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=94.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc-cCCCccCHHHHHH---HHHH-Hh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR-SSCKLEDLNSVQL---ELKE-TV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~---~l~~-~l 88 (1237)
..+.++|+.|+||||+|+.++.......... ...+....+...+.......+.. .......+++... .+.. -.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~ 118 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIG--NEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM 118 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccC--ccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhh
Confidence 4579999999999999999887542221111 01111222222221111110000 0001112222222 2221 12
Q ss_pred cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEE-EEeCchhHHHhhcC-CCeEeCCCCChhhhHHHHHHHhcCCCC
Q 000887 89 FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVALTMGS-GKNYELKLLSDDDCWSVFVAHAFEGRD 166 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~il-iTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~ 166 (1237)
.++.-++|+|+|+.-....+.++...+-.......+| .||....+...+.. ...+.+.+++.++..+.+.+.+...+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 3466799999997666566667666554434455544 45444444333322 257999999999999988887643322
Q ss_pred CCCCCChHHHHHHHHHHccCCchH
Q 000887 167 AGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 167 ~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
. -..+++..|++.++|.+.-
T Consensus 199 ~----~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 Q----YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred C----CCHHHHHHHHHHcCChHHH
Confidence 2 2267789999999998743
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00061 Score=79.48 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=94.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-c-------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-E-------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|+.|+||||+|+.++..... . .|..+++++......+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~-------------- 103 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEE-------------- 103 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHH--------------
Confidence 355789999999999999998874321 1 122233332211111111
Q ss_pred CccCHHHHHHHHHH-HhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEE-EEeCchhHHHhh-cCCCeEeCCCCC
Q 000887 73 KLEDLNSVQLELKE-TVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVALTM-GSGKNYELKLLS 149 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~il-iTtR~~~~~~~~-~~~~~~~l~~l~ 149 (1237)
..++...+.. -..+++-++|+|+++.-.......+...+-..+..+++| +||....+...+ .....+++.+++
T Consensus 104 ----ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls 179 (546)
T PRK14957 104 ----TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHIS 179 (546)
T ss_pred ----HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCC
Confidence 1111111111 123567799999996655555666666655544566555 555444343222 223689999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCch-HHHHHH
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL-AARALG 195 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 195 (1237)
.++..+.+...+...+. ...++++..|++.++|-+- |+..+-
T Consensus 180 ~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 180 QADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998888876543221 1236677899999999664 555543
No 88
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00013 Score=87.67 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=67.0
Q ss_pred cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCC
Q 000887 89 FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRD 166 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~ 166 (1237)
.+++-++|+|+++.-.......+...+-....++++|++|.+. .+...+ .....+++.+++.++..+.+.+.+.....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3567899999996655566666666554444566666555443 333222 22368999999999999999887643221
Q ss_pred CCCCCChHHHHHHHHHHccCCchHHH
Q 000887 167 AGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 167 ~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
....+.+..|++.++|.|--+.
T Consensus 197 ----~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 197 ----PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2236778899999999886443
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.93 E-value=0.00027 Score=79.47 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=91.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEE--cCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV--SDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
..+.+.++|.+|+|||++|+.+++......+.. .++.+ +.......+...+ ..+..... ...
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~i-~~~~~~~~--------------~~~ 100 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDVIRNKI-KEFARTAP--------------VGG 100 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHHHHHHH-HHHHhcCC--------------CCC
Confidence 345579999999999999999887544333322 22222 2222222111111 11111000 001
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
..+-++|+|+++.-.......+...+......+++|+++.... +.... .....+++.++++++....+...+...+..
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 2456899999955433344445544444445677777764322 11111 122478999999999999988877543322
Q ss_pred CCCCChHHHHHHHHHHccCCchHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
. .++++..+++.++|.+.-+
T Consensus 181 i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 I----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 2 2667899999999987653
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.92 E-value=2.6e-05 Score=84.55 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc--CHHHHHHHHHHHhhccCCCccCHHHHHH------HHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILDSIKRSSCKLEDLNSVQL------ELK 85 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~------~l~ 85 (1237)
...+|+|++|+||||||+++|+.....+|+.++|+.+.+.. .+.++++.+...+-..... ..++.... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d-~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD-EPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC-CCHHHHHHHHHHHHHHH
Confidence 35689999999999999999987655589999999988776 7778888886433222211 11111111 111
Q ss_pred HH--hcCCcEEEEEeCCC
Q 000887 86 ET--VFKKKFLIVLDDVW 101 (1237)
Q Consensus 86 ~~--l~~~~~LlvlDdv~ 101 (1237)
++ -.+++++|++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 22 24689999999993
No 91
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.1e-05 Score=58.29 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=30.3
Q ss_pred CCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCCh
Q 000887 423 KQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPS 464 (1237)
Q Consensus 423 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 464 (1237)
++|++|++++|.|+++|..+++|++|++|++++| .+..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888888888777888888888888887 6665543
No 92
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00017 Score=83.25 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=96.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCC-CeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..-+.|+|.+|+|||+||.++++...+.... .++|++. .++..++...+... ..++ +++..+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHhc
Confidence 4459999999999999999998865443333 4567753 34455555544321 1222 23333334
Q ss_pred cEEEEEeCCCCCC-hhh-HHHhhccccC-CCCCcEEEEEeC-chhHH--------HhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSER-YDL-WQALKSPFMA-GAPGSRIIVTTR-SMDVA--------LTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~-~~~-~~~~~~~~~~-~~~~~~iliTtR-~~~~~--------~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
.-+||+||++... ... -..+...+.. ...|..||+||+ .+... .++....++++++.+.++-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5688999995321 011 1122222211 123457888885 32221 1233345788999999999999998
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
.+.......+ ++++..|++...|..-.|.-+
T Consensus 275 ~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 275 MLEIEHGELP----EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHhcCCCCC----HHHHHHHHhccccCHHHHHHH
Confidence 8754322222 677888999888866555443
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00027 Score=81.02 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=96.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc--------------------ccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL--------------------TEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~--------------------~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|+.|+||||+|+.++.... ...+..++.++......+.++. ++.......
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~-- 111 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYL-- 111 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhc--
Confidence 34788999999999999999876321 0122334455443333332222 121111100
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeC-chhHHHhh-cCCCeEeCCCCCh
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTR-SMDVALTM-GSGKNYELKLLSD 150 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR-~~~~~~~~-~~~~~~~l~~l~~ 150 (1237)
-..++.-++|+|+++.-.......+...+-.-.+.+++|++|. ...+...+ .....+++.+++.
T Consensus 112 --------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~ 177 (491)
T PRK14964 112 --------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPT 177 (491)
T ss_pred --------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccH
Confidence 0124667899999965554556666666655556676665554 34444333 2236789999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchH
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
++..+.+...+...+... .++++..|++.++|.+..
T Consensus 178 ~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 178 DKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 999999988775433322 266788999999997754
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.87 E-value=8e-05 Score=72.96 Aligned_cols=108 Identities=22% Similarity=0.162 Sum_probs=58.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..+.+.|+|++|+|||++|++++..... ....++++..............+... ............+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 84 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAK 84 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCC
Confidence 3468999999999999999999875432 22346677654433222111111100 0111112222456
Q ss_pred cEEEEEeCCCCCChhhHHHh---hccccCC---CCCcEEEEEeCchh
Q 000887 92 KFLIVLDDVWSERYDLWQAL---KSPFMAG---APGSRIIVTTRSMD 132 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~---~~~~~~~---~~~~~iliTtR~~~ 132 (1237)
+.++|+||++.-.......+ ....... ..+..||+|+....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 89999999964211122222 2222221 36788888888643
No 95
>PRK06620 hypothetical protein; Validated
Probab=97.86 E-value=0.00015 Score=74.61 Aligned_cols=137 Identities=13% Similarity=-0.008 Sum_probs=81.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+.+.|+|++|+|||+|+.++++.. . ..++.. ... . + +..+ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~-----~~~~~~--~~~--------------~-------~-------~~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-N-----AYIIKD--IFF--------------N-------E-------EILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-C-----CEEcch--hhh--------------c-------h-------hHHh-cCC
Confidence 678999999999999999977642 1 122210 000 0 0 0111 234
Q ss_pred EEEEeCCCCCChhhHHHhhccccC-CCCCcEEEEEeCchhH-------HHhhcCCCeEeCCCCChhhhHHHHHHHhcCCC
Q 000887 94 LIVLDDVWSERYDLWQALKSPFMA-GAPGSRIIVTTRSMDV-------ALTMGSGKNYELKLLSDDDCWSVFVAHAFEGR 165 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~-------~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 165 (1237)
++++||++.-... .+...+.. ...|..||+|++.... ..++....++++++++.++-.+++++.+...+
T Consensus 88 ~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 88 AFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred EEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 6788999532111 22222111 1346689999985432 23344445899999999998888887764322
Q ss_pred CCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 166 DAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
-..+ ++++.-|++++.|---.+.-+
T Consensus 165 l~l~----~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 VTIS----RQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 2222 667788888887765554433
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.84 E-value=0.00017 Score=75.29 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
++..+.+.+||++|+|||+||+-++....+.. ..||..+....-..-.+.+..+... ...+.
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 36678899999999999999999887433332 4466655443222222223222110 11245
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE--EeCchhHHH---hhcCCCeEeCCCCChhhhHHHHHHHhc--
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV--TTRSMDVAL---TMGSGKNYELKLLSDDDCWSVFVAHAF-- 162 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili--TtR~~~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~-- 162 (1237)
++|.+|.+|.|..-+..+ .-..++....|.-++| ||-++.+.. .+....++.|+.|..++-..++.+...
T Consensus 221 krkTilFiDEiHRFNksQ---QD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQ---QDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhh---hhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 689999999994432222 2223455566776665 555554322 123336899999999999888877432
Q ss_pred -CCCC---CCCCC---ChHHHHHHHHHHccCCc
Q 000887 163 -EGRD---AGTHG---NFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 163 -~~~~---~~~~~---~~~~~~~~i~~~~~g~P 188 (1237)
+... ..+.+ -...+.+-++..++|=.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 2222 12221 23566777777888744
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00069 Score=79.84 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=92.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCeEEEEEcCCcCHHHHHHH-HHHHhhccCCCccCHHHHHHHHHHH---
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSDDFDVLRISKA-ILDSIKRSSCKLEDLNSVQLELKET--- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~--- 87 (1237)
...+.++|+.|+||||+|+.++..... .... +..++.......+... ..+-+.........++++...+...
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~ 114 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA 114 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhh
Confidence 456899999999999999998774321 1110 1111111100000000 0000000001112223333222211
Q ss_pred -hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 88 -VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 88 -l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
..+++-++|+|+++.-.......+...+-.....+++|++|.+. .+...+ +....+.+.+++.++..+.+.+.+...
T Consensus 115 P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 115 PTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred hhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc
Confidence 12466789999996544444445555554444566777666543 222221 222467888999999999998877543
Q ss_pred CCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 165 RDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
+... ..+.+..|++.++|.+.-+.
T Consensus 195 gi~i----d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 195 KIAY----EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred CCCc----CHHHHHHHHHHhCCCHHHHH
Confidence 3222 26678999999999885443
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00024 Score=82.12 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=94.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
...+.|+|..|+|||+||.++++...+... ..++|+++ .+....+...+... ..+ .+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHHh-
Confidence 356899999999999999999886543322 24567642 33344454444321 122 22333333
Q ss_pred cEEEEEeCCCCCChh-h-HHHhhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSERYD-L-WQALKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~-~-~~~~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
.-+||+||++..... . .+.+...+.. ...+..+|||+.... +..++.....+++++.+.++-.+++++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 347889999542111 1 1122222211 123556888886432 112222334789999999999999999
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
.+.......+ ++++..|++.+.|..-.+.-+
T Consensus 280 ~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 280 KAEEEGLELP----DEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHH
Confidence 8854332222 677888999888877655443
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.81 E-value=0.00068 Score=77.43 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=92.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccccc---CC-----------------CCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTE---AF-----------------EPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~---~f-----------------~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|++|+|||++|+.++...... .+ ..+++++........ ..+++...+...
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-- 112 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVD-DIREILDNVKYA-- 112 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHH-HHHHHHHHHhcC--
Confidence 3567899999999999999987754211 11 112233222111111 111222221110
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhh-cCCCeEeCCCCCh
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTM-GSGKNYELKLLSD 150 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~ 150 (1237)
-..+++-++|+|+++.-.......+...+......+.+|++|.+.. +...+ .....+++.++++
T Consensus 113 --------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~ 178 (355)
T TIGR02397 113 --------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPL 178 (355)
T ss_pred --------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCH
Confidence 0123556899999955444445555555544445666666665443 22222 2235788999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
++..+++...+...+... .++++..+++.++|.|..+...
T Consensus 179 ~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 179 EDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHH
Confidence 999999988764332222 2577889999999988655443
No 100
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.80 E-value=0.00025 Score=70.72 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=80.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
+....+.++|++|+||||||.-+++.. ...| .+.+...-... .+++..+.. + +
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~~---~~~sg~~i~k~---------------------~dl~~il~~-l-~ 100 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANEL-GVNF---KITSGPAIEKA---------------------GDLAAILTN-L-K 100 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHC-T--E---EEEECCC--SC---------------------HHHHHHHHT----
T ss_pred CCcceEEEECCCccchhHHHHHHHhcc-CCCe---EeccchhhhhH---------------------HHHHHHHHh-c-C
Confidence 456789999999999999999988842 3222 12322111111 111111111 1 2
Q ss_pred CcEEEEEeCCCCCChhhHHHhhccc--------cCCCCC-----------cEEEEEeCchhHHHhhcCC--CeEeCCCCC
Q 000887 91 KKFLIVLDDVWSERYDLWQALKSPF--------MAGAPG-----------SRIIVTTRSMDVALTMGSG--KNYELKLLS 149 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~~~~~~~~~~~--------~~~~~~-----------~~iliTtR~~~~~~~~~~~--~~~~l~~l~ 149 (1237)
++-+|++|++..-...+-+.+...+ ...+++ +-|=.|||...+...+... ...+++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 3446677888543222222211111 111221 2344688876555444333 245799999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhh
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLR 199 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 199 (1237)
.+|-.++..+.+..-.. +-..+.+.+|++++.|-|--..-+-.+++
T Consensus 181 ~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 181 EEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999876643222 23378899999999999965444444433
No 101
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=5.2e-06 Score=96.21 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=79.2
Q ss_pred cCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEE
Q 000887 396 LPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYL 475 (1237)
Q Consensus 396 ~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 475 (1237)
+..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++| .+..++. +..+.+|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence 56778888888888888888776778888888888888888884 4777778888888888 7777765 6668888888
Q ss_pred eccCCCccccCccc-ccccccccccce
Q 000887 476 NIEGASALRELPLG-MKELKCLRTLTN 501 (1237)
Q Consensus 476 ~l~~~~~l~~ip~~-~~~L~~L~~L~~ 501 (1237)
++++| .+..++.. ...+.+|+.+.+
T Consensus 168 ~l~~n-~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDELSELISLEELDL 193 (414)
T ss_pred cCCcc-hhhhhhhhhhhhccchHHHhc
Confidence 88888 56666543 466677776655
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0004 Score=81.24 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-c-------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-E-------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
...+.++|+.|+||||+|+.++....- . .|..++.++......++++ +++...+...
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~-- 114 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA-- 114 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc--
Confidence 345789999999999999998875421 1 1222333332222222221 1122111110
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCCh
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSD 150 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~ 150 (1237)
-..++.-++|+|+|+.-......++...+-.....+++|++|.+ ..+...+ .....+++.+++.
T Consensus 115 --------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~ 180 (509)
T PRK14958 115 --------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 (509)
T ss_pred --------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCH
Confidence 01245668999999665555666666665554556766655544 3333222 2225788999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
++..+.+...+...+... ..+.+..|++.++|.+.-+
T Consensus 181 ~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHH
Confidence 998888777664332222 2566788999999977543
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00057 Score=76.95 Aligned_cols=150 Identities=15% Similarity=0.051 Sum_probs=87.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccccc-------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTE-------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCK 73 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~ 73 (1237)
.+-+.++|++|+|||++|+.++....-. .++.+.++... ..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~--------------------~~ 95 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE--------------------GL 95 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc--------------------cc
Confidence 4668899999999999999987743211 11112222111 01
Q ss_pred ccCHHHHHHHHHHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhhc-CCCeEeCCC
Q 000887 74 LEDLNSVQLELKET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTMG-SGKNYELKL 147 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~~-~~~~~~l~~ 147 (1237)
...++++...+... ..+++-++|+|+++.-+......+...+-...+++.+|++|.+. .+...+. ....+.+.+
T Consensus 96 ~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~ 175 (394)
T PRK07940 96 SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRT 175 (394)
T ss_pred cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCC
Confidence 12233333222211 12355688889996654444444555554444556566555553 3333322 236899999
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 148 LSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 148 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
++.++..+.+....+ . ..+.+..+++.++|.|...
T Consensus 176 ~~~~~i~~~L~~~~~-----~----~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 176 PSVEAVAEVLVRRDG-----V----DPETARRAARASQGHIGRA 210 (394)
T ss_pred CCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHH
Confidence 999999988874321 1 1456788999999998643
No 104
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00057 Score=75.82 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=94.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhccc-----ccCCCCeEEEEE-cCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKL-----TEAFEPKAWVCV-SDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELK 85 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~-----~~~f~~~~w~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 85 (1237)
-.....++|+.|+|||++|.+++.... ..++|...|... +....++++. ++...+...
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~~~--------------- 88 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVNKK--------------- 88 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHhcC---------------
Confidence 346678999999999999999887431 223342233321 1112222221 122222111
Q ss_pred HHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHH-Hhh-cCCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 86 ETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA-LTM-GSGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 86 ~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~-~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
-..+++-++|+|+++.-+...+..+...+-.-+.++.+|++|.+.... ..+ .....+++.++++++..+.+.+...
T Consensus 89 -p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~- 166 (313)
T PRK05564 89 -PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN- 166 (313)
T ss_pred -cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc-
Confidence 012456678888886555566777777776666788888888665322 111 2236889999999999888876541
Q ss_pred CCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
. ...+.++.++..++|.|..+
T Consensus 167 --~-----~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 167 --D-----IKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred --C-----CCHHHHHHHHHHcCCCHHHH
Confidence 0 11445778899999988644
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00044 Score=80.60 Aligned_cols=161 Identities=9% Similarity=0.083 Sum_probs=95.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
..+.|+|..|+|||.|+.++++...+.. -..++|++ ..++..++...+... ..+ .+++.+++ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 3489999999999999999988543321 22456774 333444444443211 111 23333333 3
Q ss_pred EEEEEeCCCCCCh-hhH-HHhhccccC-CCCCcEEEEEeCch---------hHHHhhcCCCeEeCCCCChhhhHHHHHHH
Q 000887 93 FLIVLDDVWSERY-DLW-QALKSPFMA-GAPGSRIIVTTRSM---------DVALTMGSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 93 ~LlvlDdv~~~~~-~~~-~~~~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
=+||+||++.... ..+ ..+...+.. ...+..|||||+.. .+..++...-+++++..+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 5788899954321 111 122222221 13356699998853 22334445568899999999999999988
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
+........ .+++.-|++++.+..-.|.-+
T Consensus 459 a~~r~l~l~----~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 459 AVQEQLNAP----PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHhcCCCCC----HHHHHHHHHhccCCHHHHHHH
Confidence 754433222 667788888877765555443
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.73 E-value=0.0004 Score=81.26 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=95.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..-+.|+|.+|+|||+||.++++...+.. -..++|++. ..+...+...+... ..+ .+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh-c
Confidence 35689999999999999999988543332 123556643 23334444444211 112 2333333 3
Q ss_pred cEEEEEeCCCCCChh--hHHHhhccccC-CCCCcEEEEEeCchh---------HHHhhcCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSERYD--LWQALKSPFMA-GAPGSRIIVTTRSMD---------VALTMGSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~--~~~~~~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
.-+||+||++..... ..+.+...+.. ...|..|++|+.... +..++....++++++.+.++-.+++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 447889999542111 11222221111 123455888887542 122333345799999999999999999
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 160 HAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
.+....... .++++..|++.++|..-.+.-+
T Consensus 292 ~~~~~~~~l----~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 292 KAEEEGIDL----PDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHcCCCC----CHHHHHHHHcCcCCCHHHHHHH
Confidence 885432222 2677889999999877755433
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00082 Score=78.41 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCeEEEEEcCCcCHHHHHHHHHHHhh-----ccCCCccCHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSDDFDVLRISKAILDSIK-----RSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~ 86 (1237)
.+.+.++|+.|+|||++|+.++..... ...... .++..... +.+..... ........+++....+..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~---~Cg~C~sC----r~i~~~~h~DiieIdaas~igVd~IReIi~~ 110 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD---CCNSCSVC----ESINTNQSVDIVELDAASNNGVDEIRNIIDN 110 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcccHHH----HHHHcCCCCceEEeccccccCHHHHHHHHHH
Confidence 457889999999999999998875421 111100 01111100 11100000 000011222332222211
Q ss_pred H----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhh-cCCCeEeCCCCChhhhHHHHHHH
Q 000887 87 T----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTM-GSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 87 ~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
. ..+++-++|+|+++.-+......+...+-..+.++.+|++| ....+...+ .....+++.++++++....+...
T Consensus 111 ~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~i 190 (605)
T PRK05896 111 INYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSI 190 (605)
T ss_pred HHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHH
Confidence 1 11244569999996544445555555554334455555444 433333222 23368999999999999998887
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCch-HHHHHH
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPL-AARALG 195 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 195 (1237)
+...+... .++++..+++.++|-+. |+..+-
T Consensus 191 l~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 191 AKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 64332222 25678899999999654 444443
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.73 E-value=0.00032 Score=85.12 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=83.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh--
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV-- 88 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 88 (1237)
+....+.++|++|+||||+|+.+++. ....|. .++... .... +..+......+.+
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~-~~~~f~---~lna~~-~~i~------------------dir~~i~~a~~~l~~ 106 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANH-TRAHFS---SLNAVL-AGVK------------------DLRAEVDRAKERLER 106 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH-hcCcce---eehhhh-hhhH------------------HHHHHHHHHHHHhhh
Confidence 34567789999999999999998874 333331 121110 0010 0111111111111
Q ss_pred cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEE--eCchh--HHHhh-cCCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 89 FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT--TRSMD--VALTM-GSGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliT--tR~~~--~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
.+++.+||+|+++.-.....+.+...+ ..+..++|+ |.+.. +.... .....+.+++++.++...++...+..
T Consensus 107 ~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 107 HGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHH
Confidence 246789999999654444444444322 234555554 33321 11111 12357999999999999999877641
Q ss_pred CCC---CCCCCChHHHHHHHHHHccCCchH
Q 000887 164 GRD---AGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 164 ~~~---~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
... .....-.+++...|++.+.|..-.
T Consensus 184 ~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 184 KERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 000 011122366778888888886543
No 109
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00044 Score=76.73 Aligned_cols=170 Identities=17% Similarity=0.191 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC---CCCeEEEEEcCCcCHHHHHHHHHHH-------hhcc--C-----CCcc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA---FEPKAWVCVSDDFDVLRISKAILDS-------IKRS--S-----CKLE 75 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~---f~~~~w~~~~~~~~~~~~~~~i~~~-------l~~~--~-----~~~~ 75 (1237)
...+.|+|+.|+||||+|..++....... +.... .......-...+.+... +..+ . ....
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 45689999999999999999887543211 11110 00011011122222211 1111 0 0122
Q ss_pred CHHHHHHHHHHHhc-----CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcE-EEEEeCchhHHHhhc-CCCeEeCCCC
Q 000887 76 DLNSVQLELKETVF-----KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSR-IIVTTRSMDVALTMG-SGKNYELKLL 148 (1237)
Q Consensus 76 ~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iliTtR~~~~~~~~~-~~~~~~l~~l 148 (1237)
.++++. .+.+++. +++-++|+|+++.-+......+...+-....++. |++|++...+..... ....+.+.++
T Consensus 122 ~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl 200 (351)
T PRK09112 122 TVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPL 200 (351)
T ss_pred CHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCC
Confidence 345544 3344432 4667999999976555555555555544334444 455544433332222 2268999999
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 149 SDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 149 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
+.++..+++...... .. ...+.+..+++.++|.|....
T Consensus 201 ~~~~~~~~L~~~~~~---~~---~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 201 DDDELKKALSHLGSS---QG---SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CHHHHHHHHHHhhcc---cC---CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999874311 11 224567889999999997543
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=0.00014 Score=79.63 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC--cCHHHHHHHHHHHhhccCCCccCHH------HHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILDSIKRSSCKLEDLN------SVQLELK 85 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~ 85 (1237)
..++|+|++|+|||||+..+++...+++|+..+|+.+.+. .++.++++.+...+-.......... .......
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 3589999999999999999988655567998889998866 6888999988554433222111111 1111111
Q ss_pred HH-hcCCcEEEEEeCCC
Q 000887 86 ET-VFKKKFLIVLDDVW 101 (1237)
Q Consensus 86 ~~-l~~~~~LlvlDdv~ 101 (1237)
.. -.+++++|++|++.
T Consensus 249 ~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 249 RLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHcCCCeEEEEEChh
Confidence 11 24689999999994
No 111
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.001 Score=67.03 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=105.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCH----HHHHHHHH
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDL----NSVQLELK 85 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~l~ 85 (1237)
.++.+++.++|.-|+|||.+++++.+. ..+.-..++.++ ....+...+...++..+..+ ..... ++....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s-~~~d~~~~v~i~-~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS-LNEDQVAVVVID-KPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh-cCCCceEEEEec-CcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 355679999999999999999965542 221111222222 23345667777888777663 22222 23333333
Q ss_pred HHh-cCCc-EEEEEeCCCCCChhhHHHhhccccC---CCCCcEEEEEeCch-------hHHHhhc--CCCeEeCCCCChh
Q 000887 86 ETV-FKKK-FLIVLDDVWSERYDLWQALKSPFMA---GAPGSRIIVTTRSM-------DVALTMG--SGKNYELKLLSDD 151 (1237)
Q Consensus 86 ~~l-~~~~-~LlvlDdv~~~~~~~~~~~~~~~~~---~~~~~~iliTtR~~-------~~~~~~~--~~~~~~l~~l~~~ 151 (1237)
+.. +++| +.+++|++.+-..+..+.+...... ....-+|+..-.-. .+..... ..-.|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 3456 9999999966555554443322211 11112233222111 0111111 1123899999999
Q ss_pred hhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhH
Q 000887 152 DCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 197 (1237)
Q Consensus 152 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 197 (1237)
+...+++.+..+..... +--..++...|.+...|.|.+++.++..
T Consensus 204 ~t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999888875543222 2223677889999999999999987643
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00076 Score=77.56 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
..-+.|+|+.|+|||+||.++++..... ...+++++. ..+...+...+... . ...+++..+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 3568899999999999999998854333 234667642 33444444444221 1 122333333 34
Q ss_pred EEEEEeCCCCCChh--hHHHhhccccC-CCCCcEEEEEeCch-h--------HHHhhcCCCeEeCCCCChhhhHHHHHHH
Q 000887 93 FLIVLDDVWSERYD--LWQALKSPFMA-GAPGSRIIVTTRSM-D--------VALTMGSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~--~~~~~~~~~~~-~~~~~~iliTtR~~-~--------~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
-+|++||+...... ..+++...+.. ...|..||+||... . +..++.....+.+++++.++-.+++++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 47888998442111 11122222211 12356788888642 1 1223333468899999999999999988
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
+.......+ ++++.-|++.+.|.-
T Consensus 284 ~~~~~~~l~----~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSIRIE----ETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCCCCC----HHHHHHHHHhcCCCH
Confidence 754332222 566667777776544
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00062 Score=80.27 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccc-c-------------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLT-E-------------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCK 73 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~-~-------------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~ 73 (1237)
..+.++|+.|+||||+|+.++....- . .|..+++++....
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~-------------------- 98 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASN-------------------- 98 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecccc--------------------
Confidence 45689999999999999998775421 1 1112222221111
Q ss_pred ccCHHHHHHHHHHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCC
Q 000887 74 LEDLNSVQLELKET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKL 147 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~ 147 (1237)
..+++....+... ..+++-++|+|+++.-.......+...+-.....+.+|++|.+. .+...+ .....+++.+
T Consensus 99 -~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~ 177 (527)
T PRK14969 99 -TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQ 177 (527)
T ss_pred -CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCC
Confidence 2223322222111 12467799999996554444555665555444566666555433 332111 1125788999
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCch-HHHHH
Q 000887 148 LSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL-AARAL 194 (1237)
Q Consensus 148 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 194 (1237)
++.++..+.+.+.+...+.. ..++++..|++.++|.+- |+..+
T Consensus 178 l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 178 MPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998888766432221 225677899999999775 44444
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00088 Score=78.63 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-.......+...+-.......+|++|.. ..+...+ .....+++.+++.+|..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 46679999999665555556666655433345556655544 3443222 223578999999999999998866433222
Q ss_pred CCCCChHHHHHHHHHHccCCc-hHHHHHHhHh
Q 000887 168 GTHGNFESTRQRVVEKCKGLP-LAARALGGLL 198 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 198 (1237)
. ..+.+..|++..+|-+ .|+..+...+
T Consensus 198 i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 Y----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2567889999999855 5676665443
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.67 E-value=0.00027 Score=72.60 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=99.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeE-EEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKA-WVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~-w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
...+....+|++|.|||+.|+++++.. -.+.|+.++ -.++++.....-+.. ...+.+.......+..
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~-----------Kik~fakl~~~~~~~~ 123 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE-----------KIKNFAKLTVLLKRSD 123 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh-----------hhcCHHHHhhcccccc
Confidence 456788999999999999999988765 345665544 344444322110000 1111111111110000
Q ss_pred c--CCc-EEEEEeCCCCCChhhHHHhhccccCCCCCcE-EEEEeCchhHHHhhcC-CCeEeCCCCChhhhHHHHHHHhcC
Q 000887 89 F--KKK-FLIVLDDVWSERYDLWQALKSPFMAGAPGSR-IIVTTRSMDVALTMGS-GKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 89 ~--~~~-~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iliTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
. -.+ =++|+|+++.-..+.|.++...+-.....++ |+||+--..+...+.. ..-+.-++|.+++..+-++..+..
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH
Confidence 0 123 5889999988777889988887766666666 5566543333322211 246788899999999999888865
Q ss_pred CCCCCCCCChHHHHHHHHHHccCC
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGL 187 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~ 187 (1237)
.+.... .++.+.|++.++|-
T Consensus 204 E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 204 EGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hCCCCC----HHHHHHHHHHcCCc
Confidence 444333 56778999999884
No 116
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.0038 Score=69.47 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-----cCHHHHHHHHHHHhhccCC-----------CccCH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-----FDVLRISKAILDSIKRSSC-----------KLEDL 77 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-----~~~~~~~~~i~~~l~~~~~-----------~~~~~ 77 (1237)
..+.|.|+=.+|||+|..++.+...+..|. ++++++... .+....++.++..+...-. .....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 478999999999999999988765555554 567877542 2455555555544433211 11122
Q ss_pred HHHHHHHHHHh-c--CCcEEEEEeCCCCCCh------hhHHHhhccccCCC-----CCcEEEEE-eCchhHHHh-----h
Q 000887 78 NSVQLELKETV-F--KKKFLIVLDDVWSERY------DLWQALKSPFMAGA-----PGSRIIVT-TRSMDVALT-----M 137 (1237)
Q Consensus 78 ~~~~~~l~~~l-~--~~~~LlvlDdv~~~~~------~~~~~~~~~~~~~~-----~~~~iliT-tR~~~~~~~-----~ 137 (1237)
......+.+.+ . +++.+|++|+++..-. +-+..+........ ..-++++. +........ +
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF 190 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPF 190 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCc
Confidence 23333344432 2 5899999999954211 11122222111111 11222222 211111111 1
Q ss_pred cCCCeEeCCCCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcC
Q 000887 138 GSGKNYELKLLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSK 201 (1237)
Q Consensus 138 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~ 201 (1237)
.....++|++|+.+|..+|....... . .....++|...+||+|.-+..++..+...
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~----~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLE----F----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhcc----C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22357999999999999998876421 1 13348999999999999999999999764
No 117
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=4.8e-06 Score=73.98 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=46.8
Q ss_pred cEEEccccccccccc---cccCCCCCCeEEccCCCccccchhhccc-CCccEEEcCccccCccCChhhcccccccEEecc
Q 000887 403 RVLSLGSYCITEVPI---SIGCLKQLRYLNFSRSEIQCLPDAICSL-FNLEILILRNCWCLLKLPSRIGNLVNLHYLNIE 478 (1237)
Q Consensus 403 r~L~L~~~~i~~lp~---~~~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 478 (1237)
..++|++|.+..+++ .+....+|...+|++|.+.++|+.|... +.+..|++++| .+..+|.++..++.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 344555555443332 2234444555555555555555544322 35555555554 555555555555555555555
Q ss_pred CCCccccCccccccccccccc
Q 000887 479 GASALRELPLGMKELKCLRTL 499 (1237)
Q Consensus 479 ~~~~l~~ip~~~~~L~~L~~L 499 (1237)
.| .+...|+-+..|.+|-.|
T Consensus 109 ~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 109 FN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred cC-ccccchHHHHHHHhHHHh
Confidence 55 444445444444444444
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0012 Score=78.22 Aligned_cols=176 Identities=12% Similarity=0.101 Sum_probs=95.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC---CCCeEEEEEcCCcCHHHHHHHH-HHHhhccCCCccCHHHHHHHHHHH-
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA---FEPKAWVCVSDDFDVLRISKAI-LDSIKRSSCKLEDLNSVQLELKET- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~---f~~~~w~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~l~~~- 87 (1237)
...+.++|+.|+||||+|+.++....-.. ..+.-.-.++...+...+...- .+.+.........+++....+...
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~ 117 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV 117 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH
Confidence 45678999999999999999876432110 0111111111111111110000 000000000112333333333221
Q ss_pred ---hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhc
Q 000887 88 ---VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 88 ---l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
..++.-++|+|+|+.-.......+...+-.-...+++|++|.+ ..+...+ .....+++..++.++..+.+...+.
T Consensus 118 ~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 118 YKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred hCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 1234568999999766555666666665544556666655543 3333222 2336899999999999999988765
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
..+... ..+.+..|++.++|.+.-+.
T Consensus 198 ~egi~i----e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 198 AENVPA----EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 433222 25678899999999775443
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00083 Score=79.69 Aligned_cols=172 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccccc-CCCCeEEEEEcCCcCHHHHHHHH-HHHhhccCCCccCHHHHHHHHHHH----
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSDDFDVLRISKAI-LDSIKRSSCKLEDLNSVQLELKET---- 87 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~l~~~---- 87 (1237)
..+.++|..|+||||+|+.++....-. .+.. ..++.......+...- .+-+.........+++....+...
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p 115 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP 115 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh
Confidence 446899999999999999988754221 1100 0011110000000000 000000000012233333222211
Q ss_pred hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCC
Q 000887 88 VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGR 165 (1237)
Q Consensus 88 l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 165 (1237)
..+++-++|+|+++.-.......+...+-.-..++++|.+|.+ ..+...+ .....+.+.+++.++..+.+...+....
T Consensus 116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2356779999999665555566666555444456655554444 3343222 2236899999999999999987663322
Q ss_pred CCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 166 DAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
. ....+....|++.++|.+-...
T Consensus 196 i----~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 196 I----PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred C----CCCHHHHHHHHHHcCCCHHHHH
Confidence 1 1225677889999999776433
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00028 Score=80.68 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=93.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCeEE-----EEEcCCcCHHHHHHHHHHHh-hccCCCccCHHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAW-----VCVSDDFDVLRISKAILDSI-KRSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~~w-----~~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~l~~ 86 (1237)
..+.++|+.|+||||+|+.++....- ..+...-| -.++...+...+....--.+ ..........+++......
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~ 118 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLREN 118 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHH
Confidence 45789999999999999998875422 11111101 11111111111110000000 0000011223444332222
Q ss_pred H----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhhc-CCCeEeCCCCChhhhHHHHHHH
Q 000887 87 T----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTMG-SGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 87 ~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
. ..+++-++|+|+++.-....+..+...+....+.+.+|++| +...+...+. ....+++.++++++..+.+...
T Consensus 119 ~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 119 VRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred HhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 1 12456788999996554455666666655545566665555 4333332221 1257889999999999888877
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
+...+... .++.+..|++.++|.+--+
T Consensus 199 ~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 199 CEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 64322222 2678899999999977543
No 121
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=9e-06 Score=72.31 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=76.9
Q ss_pred cCCCCCccEEEccccccccccccc-cCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccE
Q 000887 396 LPQCKKLRVLSLGSYCITEVPISI-GCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHY 474 (1237)
Q Consensus 396 ~~~~~~Lr~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 474 (1237)
+....+|...+|++|.+.++|..| .+++.+..|+|++|.|.++|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 455677888899999999998877 4556889999999999999998999999999999998 78888888888999999
Q ss_pred EeccCCCccccCccc
Q 000887 475 LNIEGASALRELPLG 489 (1237)
Q Consensus 475 L~l~~~~~l~~ip~~ 489 (1237)
|+..+| ....+|..
T Consensus 128 Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 128 LDSPEN-ARAEIDVD 141 (177)
T ss_pred hcCCCC-ccccCcHH
Confidence 988887 56777765
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.64 E-value=0.00099 Score=75.68 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=80.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHH-HhcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKE-TVFKK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~ 91 (1237)
++-|.++|++|+|||++|+++++.. ...| +.+.. ..+.... .+ ........+.+ .-...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l-~~~~-----~~v~~----~~l~~~~---~g-------~~~~~i~~~f~~a~~~~ 215 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET-NATF-----IRVVG----SELVRKY---IG-------EGARLVREIFELAKEKA 215 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC-CCCE-----Eecch----HHHHHHh---hh-------HHHHHHHHHHHHHHhcC
Confidence 4568999999999999999998743 2222 22211 1111111 00 01111112222 22346
Q ss_pred cEEEEEeCCCCCC-----------hhh---HHHhhcccc--CCCCCcEEEEEeCchhHHH-hh----cCCCeEeCCCCCh
Q 000887 92 KFLIVLDDVWSER-----------YDL---WQALKSPFM--AGAPGSRIIVTTRSMDVAL-TM----GSGKNYELKLLSD 150 (1237)
Q Consensus 92 ~~LlvlDdv~~~~-----------~~~---~~~~~~~~~--~~~~~~~iliTtR~~~~~~-~~----~~~~~~~l~~l~~ 150 (1237)
+.+|++|+++... ... +..+...+. ....+..||.||....... .+ .....++++..+.
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 7899999985420 011 111211111 1134677888887543221 11 1235788999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
++..++|+.++...... .+. ....+++.+.|..
T Consensus 296 ~~r~~Il~~~~~~~~l~-~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLA-EDV----DLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHhcCCCC-ccC----CHHHHHHHcCCCC
Confidence 99999999877432211 111 1467788887654
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0011 Score=78.72 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=96.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-CC--CeEEEEEcCCcCHHHHHHHHHHHhhc-----cCCCccCHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FE--PKAWVCVSDDFDVLRISKAILDSIKR-----SSCKLEDLNSVQLEL 84 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~--~~~w~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l 84 (1237)
..-+.++|+.|+||||+|+.++....-.. .. +..+-.++...+. +.+...-.. .......++++...+
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C----~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC----QAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH----HHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 45688999999999999999887542111 10 1011111111111 111110000 001122334433322
Q ss_pred HHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhh-cCCCeEeCCCCChhhhHHHHH
Q 000887 85 KET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTM-GSGKNYELKLLSDDDCWSVFV 158 (1237)
Q Consensus 85 ~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~ 158 (1237)
... ..+++-++|+|+++.-.......+...+-.-..++++|++| ..+.+...+ .....+++..+++++..+.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 211 12356689999996655455566666655445567665554 444443332 223588999999999999998
Q ss_pred HHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 159 AHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
+.+....... ..+.+..|++.++|.+.-+..
T Consensus 202 ~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 202 RIAAKEGVEV----EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 8774333222 256788999999998865443
No 124
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0011 Score=74.01 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++.++|+|+++.-+......+...+-.-..++.+|++|.... +.... .....+.+.+++.++..+++......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----
Confidence 4677999999976655555566666554445666666666543 32222 22368999999999999999875411
Q ss_pred CCCCChHHHHHHHHHHccCCchHHHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
. . .+....+++.++|.|.....
T Consensus 216 -~-~--~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 216 -L-P--DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred -C-C--HHHHHHHHHHcCCCHHHHHH
Confidence 1 1 22236889999999985433
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0017 Score=75.34 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=94.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCC--------------------CCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAF--------------------EPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f--------------------~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
.....++|+.|+|||++|+.++........ ..++.++....
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------------------- 96 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------------------- 96 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc-------------------
Confidence 346689999999999999998775421111 11222221111
Q ss_pred CccCHHHHHHHHHHH----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCC
Q 000887 73 KLEDLNSVQLELKET----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELK 146 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~ 146 (1237)
...++++..+... ..+++-++|+|+++.-..+...++...+-..++.+++|++|.+. .+.... .....+++.
T Consensus 97 --~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~ 174 (535)
T PRK08451 97 --RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFK 174 (535)
T ss_pred --cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcC
Confidence 1123333322211 11456789999996655555666666655445667777666653 222111 223689999
Q ss_pred CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 147 LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
+++.++..+.+...+...+... .++++..|++.++|-+.-+..
T Consensus 175 ~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 175 QIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999887764433222 267889999999998855443
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=97.62 E-value=0.0013 Score=71.13 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=72.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
..+.++|++|+|||++|+.+++......+ ...-|+.++ ..++ ...+... ........+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l----~~~~~g~-----~~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDL----VGQYIGH-----TAPKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHH----HHHHhcc-----chHHHHHHHHHc---cC
Confidence 35889999999999999999775433222 111244333 1122 2222111 011122222222 34
Q ss_pred EEEEEeCCCCC---------ChhhHHHhhccccCCCCCcEEEEEeCchhHHH--------hhcCCCeEeCCCCChhhhHH
Q 000887 93 FLIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAL--------TMGSGKNYELKLLSDDDCWS 155 (1237)
Q Consensus 93 ~LlvlDdv~~~---------~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~ 155 (1237)
-+|++|+++.- ..+....+...+.....+..||.++....... .-.....+..++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999531 11222333333333345566777765333211 11123579999999999999
Q ss_pred HHHHHhcC
Q 000887 156 VFVAHAFE 163 (1237)
Q Consensus 156 l~~~~~~~ 163 (1237)
++...+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 99888754
No 127
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0014 Score=72.01 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=90.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC--------------------CCCeEEEEEcCCcCHHHHHHHHHHHhhccCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA--------------------FEPKAWVCVSDDFDVLRISKAILDSIKRSSC 72 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~--------------------f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 72 (1237)
..-+.++|+.|+|||++|+.++....-.. .+...|+.-... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------~ 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------D 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------------------C
Confidence 45678999999999999999887542111 112222211100 0
Q ss_pred CccCHHHHHHHHHHHh----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhhc-CCCeEeCC
Q 000887 73 KLEDLNSVQLELKETV----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTMG-SGKNYELK 146 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~~-~~~~~~l~ 146 (1237)
....+++++..+...- .+++-++|+|+++.-+......+...+-.-+.++.+|+||.+.. +...+. ....+.+.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 1223444443322211 13444557799976665666666665554445677776666553 332322 23679999
Q ss_pred CCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 147 LLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 147 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
+++.+++.+.+...... ...+.+..+++.++|.|...
T Consensus 164 ~~~~~~~~~~L~~~~~~--------~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 164 LPSNEESLQWLQQALPE--------SDERERIELLTLAGGSPLRA 200 (328)
T ss_pred CcCHHHHHHHHHHhccc--------CChHHHHHHHHHcCCCHHHH
Confidence 99999999999765310 11344567889999999643
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.60 E-value=0.00056 Score=73.61 Aligned_cols=137 Identities=11% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
+...-+.++|++|+|||++|+.++....+... ....++.+... ++. ... ...........+.+.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~----~~~-----~g~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLV----GEY-----IGHTAQKTREVIKKA-- 104 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhh----hhh-----ccchHHHHHHHHHhc--
Confidence 34567889999999999999998774322111 11123322211 111 111 001111122222221
Q ss_pred CCcEEEEEeCCCCCC--------hhhHHHhhccccCCCCCcEEEEEeCchhHHH------hh--cCCCeEeCCCCChhhh
Q 000887 90 KKKFLIVLDDVWSER--------YDLWQALKSPFMAGAPGSRIIVTTRSMDVAL------TM--GSGKNYELKLLSDDDC 153 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~--------~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~------~~--~~~~~~~l~~l~~~ea 153 (1237)
...+|++|+++.-. .+..+.+...+........+++++....... .+ .....+++++++.+|-
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 24588999995311 1223334433333333345555554332210 11 1124688999999999
Q ss_pred HHHHHHHhcC
Q 000887 154 WSVFVAHAFE 163 (1237)
Q Consensus 154 ~~l~~~~~~~ 163 (1237)
.+++...+..
T Consensus 184 ~~Il~~~~~~ 193 (261)
T TIGR02881 184 MEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHH
Confidence 9999887743
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0024 Score=74.31 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-......++...+-..++.+.+|++| +...+...+ .....+.+.+++.++..+.+...+...+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 466799999996544445555655554444455555544 433333222 223578999999999999888876433322
Q ss_pred CCCCChHHHHHHHHHHccCCchHHHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
...+++..|++.++|.+..+..
T Consensus 198 ----id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 198 ----YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2256788899999997654433
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0019 Score=77.09 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh----
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV---- 88 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 88 (1237)
.+.+.++|+.|+|||++|+.++....-.... ..+-.+..... ....-...+.........++++.. +.+..
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~-~~~~pC~~C~~---~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P 114 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKT-DLLEPCQECIE---NVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLP 114 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccC-CCCCchhHHHH---hhcCCCcEEEEeccccCCHHHHHH-HHHHHHhch
Confidence 4566899999999999999988754211110 00000000000 000000000000001112222222 21211
Q ss_pred -cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcE-EEEEeCchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCC
Q 000887 89 -FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSR-IIVTTRSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGR 165 (1237)
Q Consensus 89 -~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iliTtR~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 165 (1237)
.+++-++|+|+++.-....+.++...+-..+..+. |++|++...+...+ .....+++.+++.++..+.+...+...+
T Consensus 115 ~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 115 TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC
Confidence 24667999999965554555566555544344555 44555544444332 2236899999999999988887654332
Q ss_pred CCCCCCChHHHHHHHHHHccCCch-HHHHH
Q 000887 166 DAGTHGNFESTRQRVVEKCKGLPL-AARAL 194 (1237)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 194 (1237)
.. ...+++..+++.++|-+. |+..+
T Consensus 195 I~----id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 195 IS----YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 125678899999998664 44433
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=1e-05 Score=93.83 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=86.0
Q ss_pred CCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEe
Q 000887 397 PQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLN 476 (1237)
Q Consensus 397 ~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 476 (1237)
..+..+..+.+..|.|.++-..++.++.|.+|++.+|.|+.+...+..+.+|++|++++| .|..+.. +..+..|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence 356677777799999998777788999999999999999999776999999999999999 8888876 88899999999
Q ss_pred ccCCCccccCcccccccccccccceee
Q 000887 477 IEGASALRELPLGMKELKCLRTLTNFI 503 (1237)
Q Consensus 477 l~~~~~l~~ip~~~~~L~~L~~L~~~~ 503 (1237)
+.+| .+..++ .+..+++|+.+++..
T Consensus 147 l~~N-~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 147 LSGN-LISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred eccC-cchhcc-CCccchhhhcccCCc
Confidence 9999 676664 355577777776533
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.57 E-value=0.0012 Score=79.64 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE--EeCchhH-HHhhc-CCCeEeCCCCChhhhHHH
Q 000887 81 QLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV--TTRSMDV-ALTMG-SGKNYELKLLSDDDCWSV 156 (1237)
Q Consensus 81 ~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili--TtR~~~~-~~~~~-~~~~~~l~~l~~~ea~~l 156 (1237)
...+.+.++++++.++-|+.|..+...|+.+...+....+...++| ||++... ...+. ....+.+.+++.+|.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 4455666666666666665554443444444433333344444555 5664432 11111 124678899999999999
Q ss_pred HHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHH
Q 000887 157 FVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALG 195 (1237)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 195 (1237)
+.+.+...... -.+++.+.|++....-+-|+..++
T Consensus 362 l~~~a~~~~v~----ls~eal~~L~~ys~~gRraln~L~ 396 (615)
T TIGR02903 362 VLNAAEKINVH----LAAGVEELIARYTIEGRKAVNILA 396 (615)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHHCCCcHHHHHHHHH
Confidence 99876432111 113444555554433344444333
No 133
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=3.4e-05 Score=78.09 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCCCccEEEcccccccc---ccccccCCCCCCeEEccCCCccccchhh-cccCCccEEEcCccccC-ccCChhhcccccc
Q 000887 398 QCKKLRVLSLGSYCITE---VPISIGCLKQLRYLNFSRSEIQCLPDAI-CSLFNLEILILRNCWCL-LKLPSRIGNLVNL 472 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~---lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L 472 (1237)
.+++++.|||.+|.|+. +-..+.++++|++|+|+.|.+...-.+. -.+++|++|-|.++..- .........++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666677777777653 2333456677777777776554322222 34566666666665211 2222334555556
Q ss_pred cEEeccCC
Q 000887 473 HYLNIEGA 480 (1237)
Q Consensus 473 ~~L~l~~~ 480 (1237)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66666555
No 134
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00086 Score=74.21 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=92.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCC-eEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
....+.|+|..|.|||.|+.++.+...+..... +++++ .+.....++.++.. .....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 457899999999999999999988654444433 44553 33444445444432 1223444444
Q ss_pred CcEEEEEeCCCCCCh-hhH-HHhhccccC-CCCCcEEEEEeCch---------hHHHhhcCCCeEeCCCCChhhhHHHHH
Q 000887 91 KKFLIVLDDVWSERY-DLW-QALKSPFMA-GAPGSRIIVTTRSM---------DVALTMGSGKNYELKLLSDDDCWSVFV 158 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~-~~~-~~~~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~ 158 (1237)
.-=++++||++--.. +.+ .++...+.. ...|..||+|++.. .+..++...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334788999954211 111 222222222 13344899999743 233445555789999999999999999
Q ss_pred HHhcCCCCCCCCCChHHHHHHHHHHccC
Q 000887 159 AHAFEGRDAGTHGNFESTRQRVVEKCKG 186 (1237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g 186 (1237)
+.+.......+ .+++.-|++....
T Consensus 255 kka~~~~~~i~----~ev~~~la~~~~~ 278 (408)
T COG0593 255 KKAEDRGIEIP----DEVLEFLAKRLDR 278 (408)
T ss_pred HHHHhcCCCCC----HHHHHHHHHHhhc
Confidence 97755544444 3445555554444
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.001 Score=79.14 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=92.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEE-----EEcCCcCHHHHHHHHHHHhh-ccCCCccCHHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWV-----CVSDDFDVLRISKAILDSIK-RSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~-----~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~ 86 (1237)
..+.++|+.|+||||+|+.+++... ....+...|. .++...+...+...---.+. ........++++...+..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~ 118 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLREN 118 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHH
Confidence 4578999999999999999887542 1211111111 11222111111100000000 000011224444433322
Q ss_pred H----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhh-cCCCeEeCCCCChhhhHHHHHHH
Q 000887 87 T----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTM-GSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 87 ~----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
. ..+++-++|+|+++.-.......+...+-.-...+.+|++| +...+...+ .....+++.+++.++....+...
T Consensus 119 ~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 119 VRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred HHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 2 23456688999996655455556666655444455555444 434443322 33468999999999998888876
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCch
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPL 189 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 189 (1237)
+...+... ..+.++.|++.++|..-
T Consensus 199 ~~~egi~I----~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 199 CRAEGIQI----DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHcCCCC----CHHHHHHHHHHhCCCHH
Confidence 64322222 26778899999999554
No 136
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0022 Score=73.17 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=86.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-------CCC-eEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-------FEP-KAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLEL 84 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-------f~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 84 (1237)
.+.+.++|++|+|||++|.++++...... |.. ++.++........++ .++..++...
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~-------------- 103 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIP-------------- 103 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhc--------------
Confidence 46888999999999999999877432211 111 111111111111111 1111111100
Q ss_pred HHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhc
Q 000887 85 KETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 85 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
-..+++-++|+|+++......+..+...+-.....+.+|+++.. ..+...+ .....++..++++++....+...+.
T Consensus 104 --p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 104 --PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred --cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHH
Confidence 01235568999999554434455554444333344555555533 2222221 2235789999999999998888764
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCchH
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
..+.... ++++..+++.++|-+-.
T Consensus 182 ~~g~~i~----~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 182 KEGIKFE----DDALHIIAQKADGALRD 205 (367)
T ss_pred HcCCCCC----HHHHHHHHHhCCCCHHH
Confidence 4332222 57788999999986553
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0031 Score=76.03 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc-----cCCCccCHHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR-----SSCKLEDLNSVQLELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~ 87 (1237)
...+.++|+.|+|||++|+.++....-...+.. +-.++.. ...+.+...... ........++....+...
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-~~~c~~c----~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~ 112 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-GRPCGTC----EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERV 112 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCccC----HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHH
Confidence 355689999999999999998875321100000 0001111 111111111110 000112233322221111
Q ss_pred ----hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHh
Q 000887 88 ----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 88 ----l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
..+++-++|+|+++.-.......+...+-.....+.+|+++.+. .+...+ .....+++..++.++..+.+...+
T Consensus 113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 12456789999996544445555655554444566666655433 333222 223578899999999999888876
Q ss_pred cCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 162 FEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
...+... ..+.+..|++.++|.+..+...
T Consensus 193 ~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 193 AAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 5433222 2567889999999988655443
No 138
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00054 Score=66.55 Aligned_cols=87 Identities=20% Similarity=0.052 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC-c
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK-K 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~ 92 (1237)
+.+.|+|++|+||||+|++++....... ..++++.............. .....................+..+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999987543322 34666665444322222111 111111112222233333344443433 4
Q ss_pred EEEEEeCCCCC
Q 000887 93 FLIVLDDVWSE 103 (1237)
Q Consensus 93 ~LlvlDdv~~~ 103 (1237)
.+|++|+++..
T Consensus 80 ~viiiDei~~~ 90 (148)
T smart00382 80 DVLILDEITSL 90 (148)
T ss_pred CEEEEECCccc
Confidence 99999999664
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.47 E-value=0.0018 Score=70.20 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
-+.++|++|+|||++|+.++....+..+ ...-|+.+.. .++ ...+... ........+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TAPKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----chHHHHHHHHHc---cCc
Confidence 5889999999999999988764433222 1112343332 112 2211111 111222222222 346
Q ss_pred EEEEeCCCCC---------ChhhHHHhhccccCCCCCcEEEEEeCchhHHHhh--------cCCCeEeCCCCChhhhHHH
Q 000887 94 LIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTM--------GSGKNYELKLLSDDDCWSV 156 (1237)
Q Consensus 94 LlvlDdv~~~---------~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~--------~~~~~~~l~~l~~~ea~~l 156 (1237)
+|++|++..- .......+...+.....+.+||+++.......-. .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 1112233344443344566676666433221110 1135789999999999999
Q ss_pred HHHHhcC
Q 000887 157 FVAHAFE 163 (1237)
Q Consensus 157 ~~~~~~~ 163 (1237)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887643
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0031 Score=72.94 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-.......+...+-....++.+|++|.. ..+...+ .....+++.++++++..+.+...+...+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46778999999554434444555555444456666666543 2232222 223578999999999999888776432222
Q ss_pred CCCCChHHHHHHHHHHccCCch-HHHHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPL-AARAL 194 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PL-al~~~ 194 (1237)
. .++++..|++.++|-+- |+..+
T Consensus 200 i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 200 T----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 26678899999999664 44433
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0033 Score=74.29 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=94.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCeEEEEEcCCcCHHHHHHH---HHHHhhccCCCccCHHHHHHHHHHH-
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSDDFDVLRISKA---ILDSIKRSSCKLEDLNSVQLELKET- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~l~~~- 87 (1237)
...+.++|+.|+||||+|+.++....- ...+ +..++...+...+... -.+.+.........+++........
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~ 111 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAF 111 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHH
Confidence 345689999999999999998874321 1110 0111111111111000 0000000000111233332211111
Q ss_pred ---hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEe-CchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhc
Q 000887 88 ---VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 88 ---l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
..+++-++|+|+++.-.......+...+-....++.+|++| ....+...+ .....+++..++.++..+.+...+.
T Consensus 112 ~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 112 YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 12456688999996655566666666665555566655544 444443332 2236899999999999988887664
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCch-HHHHHHh
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPL-AARALGG 196 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 196 (1237)
..+... ..+.+..|++..+|-+- |+..+-.
T Consensus 192 ~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 192 QEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333222 25677889999999774 4444433
No 142
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00035 Score=66.54 Aligned_cols=21 Identities=48% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 000887 16 IPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~ 36 (1237)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999885
No 143
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.43 E-value=1.8e-05 Score=82.36 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=61.2
Q ss_pred hhhhcCCCCCccEEEcccccccc-----ccccccCCCCCCeEEccCCC----ccccchh-------hcccCCccEEEcCc
Q 000887 392 LSDLLPQCKKLRVLSLGSYCITE-----VPISIGCLKQLRYLNFSRSE----IQCLPDA-------ICSLFNLEILILRN 455 (1237)
Q Consensus 392 ~~~~~~~~~~Lr~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~ 455 (1237)
+.+....+..+..++|+||.+.. +...+.+.++||.-++++-. ..++|+. +-+.++|++||||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34455678889999999999863 44556777899999988642 2345543 44566899999998
Q ss_pred cccCccCChh----hcccccccEEeccCCC
Q 000887 456 CWCLLKLPSR----IGNLVNLHYLNIEGAS 481 (1237)
Q Consensus 456 ~~~l~~lp~~----i~~L~~L~~L~l~~~~ 481 (1237)
|-.=..-++. |..+..|++|+|.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 8322222222 4567888888888884
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0015 Score=78.36 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=91.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc-----cCCCccCHHHHHHHHHHH-
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR-----SSCKLEDLNSVQLELKET- 87 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~- 87 (1237)
+.+.++|+.|+|||++|+.++........+....-.++.. ..-+.+...... .......++++...+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C----~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~ 114 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC----ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQ 114 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc----HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHh
Confidence 5678999999999999999887543221111100111111 111111111100 001112233333333221
Q ss_pred ---hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhc
Q 000887 88 ---VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAF 162 (1237)
Q Consensus 88 ---l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~ 162 (1237)
..+++-++|+|+++.-.......+...+-.-...+.+|++|.+ ..+...+ .....+++..++.++..+.+.+.+.
T Consensus 115 ~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 115 FAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred hChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 1245678999999655445555665555443445555544443 3333222 2235788889999998888877664
Q ss_pred CCCCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 163 EGRDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
..+... ..+++..|++.++|.+..+.
T Consensus 195 kegi~i----s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 195 KESIEI----EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HhCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 322222 14668899999999775443
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0049 Score=73.06 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccccc-CCCCeEEEEEcCCcCHHHHHHHHHHH-hhccCCCccCHHHHHHHHHH----
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSDDFDVLRISKAILDS-IKRSSCKLEDLNSVQLELKE---- 86 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~---- 86 (1237)
.+.+.++|+.|+|||++|+.++....-. .... ..++...+...+.....-. ...........++.+.....
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~ 114 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP 114 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc
Confidence 4568899999999999999988754211 1100 0111111111110000000 00000011223333322211
Q ss_pred HhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCC
Q 000887 87 TVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEG 164 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~ 164 (1237)
-..+++-++|+|+++.-.......+...+-..+..+.+|++|.. ..+...+ .....++..+++.++..+.+.+.+...
T Consensus 115 p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred hhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 11346678999999665545566666665544456666655543 3333222 223578999999999998888876433
Q ss_pred CCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 165 RDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
+.. -.++++..|++.++|.+..+.
T Consensus 195 gi~----id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 195 QIK----YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 222 226778889999999775443
No 146
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.39 E-value=0.0011 Score=64.81 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
+++++-+.|.||+|+||||-+..+++......| +++.-.++++...++.+...|-.-..... .+
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv---------------~l 109 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKV---------------TL 109 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhc---------------cC
Confidence 477888999999999999999998886654444 45556666665544444333322111000 01
Q ss_pred -cCCcEEEEEeCCCCCChhh
Q 000887 89 -FKKKFLIVLDDVWSERYDL 107 (1237)
Q Consensus 89 -~~~~~LlvlDdv~~~~~~~ 107 (1237)
.++.=++|+|.+++-+...
T Consensus 110 p~grhKIiILDEADSMT~gA 129 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTAGA 129 (333)
T ss_pred CCCceeEEEeeccchhhhHH
Confidence 1355688999996644333
No 147
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.38 E-value=0.00045 Score=70.45 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 9 DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 9 ~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
.....+.+.|+|.+|+|||+++++++....+.... ++.+.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 34556999999999999999999988755333222 444444433
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0033 Score=75.38 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE-EeCchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili-TtR~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-.......+...+-.-..++.+|+ |++...+...+ .....+++.++++++..+.+...+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3566889999966555556666666655445666555 44444444332 223689999999999999998876443322
Q ss_pred CCCCChHHHHHHHHHHccCCchH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
. ..+++..|++.+||-.--
T Consensus 200 i----~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 200 A----EPEALNVIAQKADGGMRD 218 (614)
T ss_pred C----CHHHHHHHHHHcCCCHHH
Confidence 2 256788999999996643
No 149
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.33 E-value=0.0021 Score=73.23 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=79.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH-hcC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET-VFK 90 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~ 90 (1237)
.++-|.++|++|+|||++|+++++.. ... |+.+.. ..+. .... .........+.+. -..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~-~~~-----~i~v~~----~~l~----~~~~------g~~~~~i~~~f~~a~~~ 223 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET-NAT-----FIRVVG----SELV----QKFI------GEGARLVRELFELAREK 223 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh-CCC-----EEEeeh----HHHh----Hhhc------cchHHHHHHHHHHHHhc
Confidence 35668999999999999999998743 211 222211 1111 1110 0111122222222 234
Q ss_pred CcEEEEEeCCCCC-----------ChhhHHHhhccc---cC--CCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCC
Q 000887 91 KKFLIVLDDVWSE-----------RYDLWQALKSPF---MA--GAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLS 149 (1237)
Q Consensus 91 ~~~LlvlDdv~~~-----------~~~~~~~~~~~~---~~--~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~ 149 (1237)
.+.+|++|+++.- .......+...+ .. ...+..||.||........ + .-...++++..+
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 6789999999531 001111122211 11 1235667777765432211 1 123578999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCC
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGL 187 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 187 (1237)
.++..++|+.+....... .+.. ...+++.+.|.
T Consensus 304 ~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred HHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 999999999876432211 1111 35666766664
No 150
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0048 Score=76.15 Aligned_cols=171 Identities=12% Similarity=0.058 Sum_probs=93.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcCHHHHHHH---HHHHhhccCCCccCHHHHHHHHHH---
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFDVLRISKA---ILDSIKRSSCKLEDLNSVQLELKE--- 86 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~l~~--- 86 (1237)
..+.++|+.|+||||+|+.++.... ...... -.++...+...+... -.+.+.........+++++....+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~ 114 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTS---TPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFF 114 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---CCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHh
Confidence 4578999999999999999887542 111100 001111111110000 000000000011223333322111
Q ss_pred -HhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhhc-CCCeEeCCCCChhhhHHHHHHHhcC
Q 000887 87 -TVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTMG-SGKNYELKLLSDDDCWSVFVAHAFE 163 (1237)
Q Consensus 87 -~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~~ 163 (1237)
-..++.-++|+|+++.-+......+...+-.-..++.+|++|.+ ..+...+. ....+++..++.++-.+++.+....
T Consensus 115 ~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 115 APAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred chhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 12345668999999766666666677666655566666655543 34433322 2368899999999998888876533
Q ss_pred CCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 164 GRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
.... ...+.+..|++.++|.+..+
T Consensus 195 EGv~----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 195 EGVP----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred cCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 2221 12556788999999987433
No 151
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.31 E-value=0.0033 Score=70.32 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=69.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
-..++.++|++|+|||++|+++++.. . ..+..++.... ....+...+.... .. ....+.
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~-~---~~~~~i~~~~~-~~~~i~~~l~~~~-~~---------------~~~~~~ 100 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEV-G---AEVLFVNGSDC-RIDFVRNRLTRFA-ST---------------VSLTGG 100 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh-C---ccceEeccCcc-cHHHHHHHHHHHH-Hh---------------hcccCC
Confidence 35677779999999999999988743 1 12345554442 2222211111110 00 001134
Q ss_pred cEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHH-Hhh-cCCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVA-LTM-GSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~-~~~-~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
+-++|+|+++.. .......+...+.....++++|+||...... ..+ .....+.++..+.++..+++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 568999999543 2222233333333345677888888754321 111 1224677777888887766554
No 152
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00078 Score=72.04 Aligned_cols=104 Identities=29% Similarity=0.311 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.-+.++|.+|+|||.||.++++...+. ...+++++ ..++...+....... ...... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSS--GKEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhcc--ccccHH----HHHHHhcCCC-
Confidence 358899999999999999999865444 33466765 334444444443221 111111 2333344444
Q ss_pred EEEEeCCCCCChhhHHH--hhccccC-CCCCcEEEEEeCch
Q 000887 94 LIVLDDVWSERYDLWQA--LKSPFMA-GAPGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~~--~~~~~~~-~~~~~~iliTtR~~ 131 (1237)
|||+||+......+|.. +...+.. ...+..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995432233322 2222221 13456699999754
No 153
>PTZ00202 tuzin; Provisional
Probab=97.30 E-value=0.019 Score=63.27 Aligned_cols=140 Identities=11% Similarity=0.181 Sum_probs=80.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh---
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV--- 88 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 88 (1237)
.+++++|.|++|+|||||++.+..... + ..++++. . +..+++..++.+|+.+.. ....++...+.+.+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~---~-~qL~vNp-r--g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG---M-PAVFVDV-R--GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRA 355 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC---c-eEEEECC-C--CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHH
Confidence 457999999999999999999886432 2 1333332 3 678999999999997432 22233333333332
Q ss_pred --c-CCcEEEEEeCCCCCChhh-HHHhhccccCCCCCcEEEEEeCchhHHHh---hcCCCeEeCCCCChhhhHHHHHHHh
Q 000887 89 --F-KKKFLIVLDDVWSERYDL-WQALKSPFMAGAPGSRIIVTTRSMDVALT---MGSGKNYELKLLSDDDCWSVFVAHA 161 (1237)
Q Consensus 89 --~-~~~~LlvlDdv~~~~~~~-~~~~~~~~~~~~~~~~iliTtR~~~~~~~---~~~~~~~~l~~l~~~ea~~l~~~~~ 161 (1237)
. +++.+||+-==+...... +.+. ..+.-...-|+|++----+.+... .+.-..+-++.|+.++|.+......
T Consensus 356 ~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 356 KKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2 466666663321111111 1111 112223446777775543322111 1112468899999999998876553
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.018 Score=69.12 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE-EeCchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili-TtR~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-+......+...+-.-..++.+|+ |+....+...+ .....+++.+++.++..+.+...+...+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3556899999965544555556655544445666554 44444444332 223578899999999988887765433222
Q ss_pred CCCCChHHHHHHHHHHccCCc-hHHHHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLP-LAARAL 194 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 194 (1237)
. ..+.+..|++.++|.. .|+..+
T Consensus 198 i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 I----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2567889999999965 444444
No 155
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=2.2e-05 Score=88.99 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=34.2
Q ss_pred CCCCccEEEccccccccccccccCCCCCCeEEccCCCccccch-hhcccCCccEEEcCccccCccCChhhcccccccEEe
Q 000887 398 QCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPD-AICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLN 476 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 476 (1237)
-++.|+.|+|++|.+++.. .+..+++|+.|||++|.+..+|. +-... +|+.|.+++| .++++-. |.+|++|+.||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HHhhhhhhccc
Confidence 3344444444444444443 23444444444444444444443 11111 2444444444 3333322 44444444444
Q ss_pred ccCC
Q 000887 477 IEGA 480 (1237)
Q Consensus 477 l~~~ 480 (1237)
++.|
T Consensus 261 lsyN 264 (1096)
T KOG1859|consen 261 LSYN 264 (1096)
T ss_pred hhHh
Confidence 4444
No 156
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.0012 Score=70.16 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.-+.++|++|+|||.||.++++...+..+ .++|++ ..++...+.... .....++.. . .+ .+.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-~v~f~~------~~~L~~~l~~a~-----~~~~~~~~l---~-~l-~~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGW-RVLFTR------TTDLVQKLQVAR-----RELQLESAI---A-KL-DKFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCC-ceeeee------HHHHHHHHHHHH-----hCCcHHHHH---H-HH-hcCC
Confidence 45899999999999999999875544433 456664 334444443321 111222222 2 22 2445
Q ss_pred EEEEeCCCCCChhhH--HHhhccccCCCCCcEEEEEeCch
Q 000887 94 LIVLDDVWSERYDLW--QALKSPFMAGAPGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~--~~~~~~~~~~~~~~~iliTtR~~ 131 (1237)
|||+||+.......+ ..+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999954322222 12333222222234699999864
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.011 Score=64.80 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=95.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc--------------cCCCCeEEEEEcCCcCHHHHHHHHHHHhh--ccCCCccC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT--------------EAFEPKAWVCVSDDFDVLRISKAILDSIK--RSSCKLED 76 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~--------------~~f~~~~w~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~ 76 (1237)
.....++|+.|+||+++|.+++..... ..++...|+.-....+...+-...+...+ ........
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 478899999999999999998775421 23344556542111000000011111221 11111233
Q ss_pred HHHHHHHHHHHh-----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhc-CCCeEeCCCCCh
Q 000887 77 LNSVQLELKETV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMG-SGKNYELKLLSD 150 (1237)
Q Consensus 77 ~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~-~~~~~~l~~l~~ 150 (1237)
+++... +.+.+ .+++-++|+|+++.-+.....++...+-.-+...-|++|++...+...+. ....+.+.++++
T Consensus 106 id~ir~-i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~ 184 (314)
T PRK07399 106 LEQIRE-IKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSD 184 (314)
T ss_pred HHHHHH-HHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCH
Confidence 444333 33333 24677899999965554455555555433232333455554444443332 236899999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
++..+.+.+..... . .......++..++|.|.....
T Consensus 185 ~~~~~~L~~~~~~~---~----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 185 EQLEQVLKRLGDEE---I----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHHhhccc---c----chhHHHHHHHHcCCCHHHHHH
Confidence 99999998764211 1 111236889999999965543
No 158
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.11 E-value=3.3e-05 Score=87.72 Aligned_cols=118 Identities=25% Similarity=0.242 Sum_probs=93.6
Q ss_pred CCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChh-hcccccccEEec
Q 000887 399 CKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSR-IGNLVNLHYLNI 477 (1237)
Q Consensus 399 ~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 477 (1237)
...|.+.+.++|.+..+..++.-++.|+.|||++|.+...- .+..+.+|++|||++| .+..+|.- ...+. |+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeee
Confidence 45788889999999999888999999999999999999885 7999999999999999 88888873 23344 999999
Q ss_pred cCCCccccCcccccccccccccceeeeccCCCcCcccccchHhc
Q 000887 478 EGASALRELPLGMKELKCLRTLTNFIVGKDSGCALRDLKNWKFL 521 (1237)
Q Consensus 478 ~~~~~l~~ip~~~~~L~~L~~L~~~~~~~~~~~~i~~l~~l~~L 521 (1237)
++| .++.+ .++.+|++|+.|++..+-......+.-|..|..|
T Consensus 240 rnN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 240 RNN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred ccc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 998 67777 5689999999998866544444333333333333
No 159
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.11 E-value=0.0007 Score=67.35 Aligned_cols=101 Identities=23% Similarity=0.304 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.-+.++|.+|+|||.||.+++....+..+. +.|++ ..+++..+ .... .....++. +. .+. +-=
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~-v~f~~------~~~L~~~l----~~~~-~~~~~~~~---~~-~l~-~~d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYS-VLFIT------ASDLLDEL----KQSR-SDGSYEEL---LK-RLK-RVD 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE------HHHHHHHH----HCCH-CCTTHCHH---HH-HHH-TSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcc-eeEee------cCceeccc----cccc-cccchhhh---cC-ccc-ccc
Confidence 468999999999999999998866554443 66774 33344433 2221 11122222 22 223 345
Q ss_pred EEEEeCCCCCChhhHHH--hhccccCCCCCcEEEEEeCch
Q 000887 94 LIVLDDVWSERYDLWQA--LKSPFMAGAPGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~~--~~~~~~~~~~~~~iliTtR~~ 131 (1237)
|||+||+-......|.. +...+.....+..+||||...
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred EecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 77799995543333322 111111111123588898754
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.015 Score=69.31 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEE-EeCchhHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~ili-TtR~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
++.-++|+|+++.-.......+...+-....++.+|+ ||....+...+ .....++..+++.++..+.+...+...+..
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4667889999965554556666655544344555454 44433333222 223578899999999998888876433222
Q ss_pred CCCCChHHHHHHHHHHccCCchH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
. ..+++..|++.++|-+..
T Consensus 198 i----~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 198 Y----EDEALRLIARAAEGGMRD 216 (559)
T ss_pred C----CHHHHHHHHHHcCCCHHH
Confidence 2 256788899999987654
No 161
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=5.4e-05 Score=91.24 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=72.1
Q ss_pred ccceeEEEEecCCCccc--ccCCCCCccceeeeeeecC-CCccccC----cCCCCCCcccEEEEcCCCCccccc--cccC
Q 000887 919 YLDLESLFVYRCPSLTC--LWSGGRLPVTLKRLRIEDC-SNFKVLT----SECQLPVEVEELTIYGCSNLESIA--ERFH 989 (1237)
Q Consensus 919 ~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c-~~l~~l~----~~~~~~~~L~~L~l~~c~~~~~~~--~~~~ 989 (1237)
++.|+.+.+.+|..+.. +......++.|+.|++.+| ......+ .....+.+|+.|++++|..+.+.. ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67788888888888776 3344566778888888874 2222221 222334778888888877544432 1222
Q ss_pred CcccccEEeeccccccc--cccccccCCCCCceeeeccCCCc
Q 000887 990 DDACLRSIWISSCENLK--SLPKGLSNLSHLHEIRIVRCHNL 1029 (1237)
Q Consensus 990 ~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~~l 1029 (1237)
.+++|++|.+.+|..++ .+-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 36788888888887654 23344567788888888888766
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.04 E-value=0.0072 Score=68.44 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=80.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
.++-|.++|++|+|||++|+++++.. ...| +.+. . ..+.... .+ .........+.......
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l-~~~f---i~i~--~----s~l~~k~---~g------e~~~~lr~lf~~A~~~~ 238 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT-TATF---IRVV--G----SEFVQKY---LG------EGPRMVRDVFRLARENA 238 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc-CCCE---EEEe--h----HHHHHHh---cc------hhHHHHHHHHHHHHhcC
Confidence 45678999999999999999998742 2111 2221 1 1111111 11 11111222222333457
Q ss_pred cEEEEEeCCCCCC-----------hh---hHHHhhccccC--CCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCCh
Q 000887 92 KFLIVLDDVWSER-----------YD---LWQALKSPFMA--GAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLSD 150 (1237)
Q Consensus 92 ~~LlvlDdv~~~~-----------~~---~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~ 150 (1237)
+.+|++|+++..- .. .+..+...+.. ...+..||+||........ + .-...++++..+.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 8999999985310 00 01112211111 2245678888875543321 1 1235688998999
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
++..++|+....... ...+.. ..++++...|.-
T Consensus 319 ~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 319 RQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 998889987763221 112112 356667665543
No 163
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0011 Score=69.91 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+-+.++|++|+|||+||.+++....+..+. +.|+ +..++...+..... . .. ....+.+. .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH----A-GR---LQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHHHh--ccCC
Confidence 468999999999999999998755544443 4443 23334444432210 1 11 11223322 2456
Q ss_pred EEEEeCCCCCChhhH--HHhhccccCCCCCcEEEEEeCch
Q 000887 94 LIVLDDVWSERYDLW--QALKSPFMAGAPGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~--~~~~~~~~~~~~~~~iliTtR~~ 131 (1237)
+||+||+.....+.+ ..+...+........+||||..+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 899999954321121 12222221111122488888864
No 164
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.00 E-value=4.4e-05 Score=79.57 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=63.9
Q ss_pred ccccCCCCCCeEEccCCCcc-----ccchhhcccCCccEEEcCcc---ccCccCChhh-------cccccccEEeccCCC
Q 000887 417 ISIGCLKQLRYLNFSRSEIQ-----CLPDAICSLFNLEILILRNC---WCLLKLPSRI-------GNLVNLHYLNIEGAS 481 (1237)
Q Consensus 417 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~---~~l~~lp~~i-------~~L~~L~~L~l~~~~ 481 (1237)
+.+..+..+..|+|++|.+. .+.+.+.+.++|+..++++= ....++|+.+ -..++|++|+|++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33567789999999999876 34557888899999998863 1234556543 355699999999995
Q ss_pred ccccCccc----ccccccccccceeeecc
Q 000887 482 ALRELPLG----MKELKCLRTLTNFIVGK 506 (1237)
Q Consensus 482 ~l~~ip~~----~~~L~~L~~L~~~~~~~ 506 (1237)
.-..-++. +++.+.|++|.+.+++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 44444443 56678888887765543
No 165
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.02 Score=62.42 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=89.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-----------------CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCcc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----------------FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLE 75 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-----------------f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 75 (1237)
...+.++|+.|+||+++|.++++...-.. ++...|+....... +.......
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------------~~k~~~~I 93 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------------GDKLRTEI 93 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------------cccccccc
Confidence 45688999999999999999887542111 11122221000000 00000112
Q ss_pred CHHHHHHHHHHHh----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhhcC-CCeEeCCCCC
Q 000887 76 DLNSVQLELKETV----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTMGS-GKNYELKLLS 149 (1237)
Q Consensus 76 ~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~~~-~~~~~l~~l~ 149 (1237)
.++++.......- .+++-++|+|+++.-+.....++...+-.-+.++.+|++|.. ..+...+.+ ...+.+.+++
T Consensus 94 ~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~ 173 (319)
T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP 173 (319)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcC
Confidence 2444333322111 235679999999655544555565555444556766666554 334333322 3578899999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHH
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAAR 192 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 192 (1237)
.+++.+.+.... .. ...+..++..++|.|+...
T Consensus 174 ~~~~~~~L~~~~------~~----~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 174 AHEALAWLLAQG------VS----ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred HHHHHHHHHHcC------CC----hHHHHHHHHHcCCCHHHHH
Confidence 999998887531 11 2336678999999997543
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00042 Score=83.68 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=78.9
Q ss_pred ccccccccccccccccccccCCCCCCcchhhhhcCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccc--h
Q 000887 363 LDKVVNLRTFLPIFFKQWRIYPPNISPMVLSDLLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLP--D 440 (1237)
Q Consensus 363 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp--~ 440 (1237)
...+|.||+|...+... ...-+...+..+++|++||+++++++.+ ..++.|++|++|.+.+-.++.-. .
T Consensus 144 g~~LPsL~sL~i~~~~~--------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQF--------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred hhhCcccceEEecCcee--------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHH
Confidence 34567777776544221 1122567788999999999999999988 56899999999999888777543 3
Q ss_pred hhcccCCccEEEcCccccCccCChhh-------cccccccEEeccCCC
Q 000887 441 AICSLFNLEILILRNCWCLLKLPSRI-------GNLVNLHYLNIEGAS 481 (1237)
Q Consensus 441 ~i~~L~~L~~L~L~~~~~l~~lp~~i-------~~L~~L~~L~l~~~~ 481 (1237)
.+.+|++|++||+|..... ..+.-+ ..|++||.||.+++.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 6889999999999986332 222211 248899999998773
No 167
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.0031 Score=72.68 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=60.2
Q ss_pred CCCCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH
Q 000887 8 SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET 87 (1237)
Q Consensus 8 ~~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 87 (1237)
.+-+.-+|.-++|++|.||||||.-++++ ..| .|+-+++++..+...+-+.|..++.......+
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkq---aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQ---AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHh---cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 33455689999999999999999988763 344 38899999999988888888777654432211
Q ss_pred hcCCcEEEEEeCCCCCC
Q 000887 88 VFKKKFLIVLDDVWSER 104 (1237)
Q Consensus 88 l~~~~~LlvlDdv~~~~ 104 (1237)
..++.-||+|.++...
T Consensus 385 -dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAP 400 (877)
T ss_pred -CCCcceEEEecccCCc
Confidence 1588899999996544
No 168
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.023 Score=58.25 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEeCchhHHHhhcC--CCeEeCCCCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcC
Q 000887 124 IIVTTRSMDVALTMGS--GKNYELKLLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSK 201 (1237)
Q Consensus 124 iliTtR~~~~~~~~~~--~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~ 201 (1237)
|=-|||--.+...+.. ..+.+++-.+.+|-.++..+.+..-.. +-..+.+.+|+++..|-|- ++.+.+++.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPR---IAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPR---IANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcH---HHHHHHHHH
Confidence 3368886544332222 246788889999999998887743222 2236789999999999995 444555543
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.91 E-value=0.0013 Score=66.50 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=54.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCC---CccCHHHHH-HHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSC---KLEDLNSVQ-LELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~ 87 (1237)
++++.++|+.|+||||.+.++++....+ -..+..++.+...- ..+-++..++.++.+.. ...+..+.. +.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 5799999999999999999998865444 44577888765543 44566677888876532 222333333 333333
Q ss_pred hcCCcEEEEEeCCC
Q 000887 88 VFKKKFLIVLDDVW 101 (1237)
Q Consensus 88 l~~~~~LlvlDdv~ 101 (1237)
-.++-=+|++|=.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 22334577788774
No 170
>PRK08118 topology modulation protein; Reviewed
Probab=96.90 E-value=0.002 Score=63.55 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-c-ccCCCCeEE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-L-TEAFEPKAW 47 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~-~~~f~~~~w 47 (1237)
+.|.|+|++|+||||+|+++++.. . --.||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999998865 2 245676666
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.015 Score=64.76 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=76.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcCHHHHHHHHHHHhh--ccCCCccCHHHHHHHHHHH--
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFDVLRISKAILDSIK--RSSCKLEDLNSVQLELKET-- 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~-- 87 (1237)
.....++|+.|+|||++|..+++...-.. .... .++...+...+....-..+. .........++++..+...
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSK 104 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhh
Confidence 45678999999999999999877542211 1100 01111000000000000000 0001112334443333221
Q ss_pred --hcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhh-cCCCeEeCCCCChhhhHHHHHH
Q 000887 88 --VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTM-GSGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 88 --l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
..+++-++|+|+++.-+......+...+-.-+.++.+|++|..+. +...+ .....+++.++++++..+.+..
T Consensus 105 ~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 124566799999966555555566666665556777777776543 32222 2236899999999999888864
No 172
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.0036 Score=64.32 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV 50 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~ 50 (1237)
-.++|.|..|+|||+++..+... ..+.|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEec
Confidence 36789999999999999998864 5667777766643
No 173
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.89 E-value=0.015 Score=62.09 Aligned_cols=142 Identities=14% Similarity=0.152 Sum_probs=85.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCcc-------CHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLE-------DLNSVQLEL 84 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l 84 (1237)
-+.+|.|+|-+|.|||.+.+++.... -...+|+++.+.++.+.+...|+...+..+..+. +..+....+
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l 104 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLL 104 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHH
Confidence 35567999999999999999988753 2236799999999999999999999863222211 122222233
Q ss_pred HHH--hc--CCcEEEEEeCCCCCChhhHHH-----hhccccCCCCCcEEEEEeCchhHHH---hhcCC--CeEeCCCCCh
Q 000887 85 KET--VF--KKKFLIVLDDVWSERYDLWQA-----LKSPFMAGAPGSRIIVTTRSMDVAL---TMGSG--KNYELKLLSD 150 (1237)
Q Consensus 85 ~~~--l~--~~~~LlvlDdv~~~~~~~~~~-----~~~~~~~~~~~~~iliTtR~~~~~~---~~~~~--~~~~l~~l~~ 150 (1237)
.++ .. ++.+.||+||++.-. +.++ +....--.....-+|+++-...... +++.. .++..+.-+.
T Consensus 105 ~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~ 182 (438)
T KOG2543|consen 105 VQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSV 182 (438)
T ss_pred HhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCH
Confidence 331 12 358999999995421 1111 1111111122334555554332221 12332 3566788899
Q ss_pred hhhHHHHHH
Q 000887 151 DDCWSVFVA 159 (1237)
Q Consensus 151 ~ea~~l~~~ 159 (1237)
+|..+++.+
T Consensus 183 ~e~~~Il~~ 191 (438)
T KOG2543|consen 183 EETQVILSR 191 (438)
T ss_pred HHHHHHHhc
Confidence 999998864
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=96.87 E-value=0.019 Score=69.05 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=84.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
++-|.++|++|+|||++|++++... . +-|+.++.. ++..... + .........+.......+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~-~-----~p~i~is~s----~f~~~~~---g------~~~~~vr~lF~~A~~~~P 276 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA-E-----VPFFSISGS----EFVEMFV---G------VGAARVRDLFKKAKENSP 276 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-C-----CCeeeccHH----HHHHHhh---h------hhHHHHHHHHHHHhcCCC
Confidence 4568999999999999999998742 1 112322211 1111100 0 111223334444555678
Q ss_pred EEEEEeCCCCCC----------hhh----HHHhhcccc--CCCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCChh
Q 000887 93 FLIVLDDVWSER----------YDL----WQALKSPFM--AGAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLSDD 151 (1237)
Q Consensus 93 ~LlvlDdv~~~~----------~~~----~~~~~~~~~--~~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~~ 151 (1237)
++|++|+++.-. .+. +..+...+. ....+..||.||........ + .-...+.++..+.+
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHH
Confidence 999999995320 011 111221111 12345566666665443221 1 12357888889999
Q ss_pred hhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccC-CchHHH
Q 000887 152 DCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKG-LPLAAR 192 (1237)
Q Consensus 152 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~ 192 (1237)
+-.++++.++..... ........+++.+.| .+-.|.
T Consensus 357 ~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 357 GRLDILKVHARNKKL-----SPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred HHHHHHHHHHhhccc-----chhHHHHHHHhcCCCCCHHHHH
Confidence 999999988743111 113345678887776 333343
No 175
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.83 E-value=0.003 Score=70.74 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCH-HHHHHHHHHHhc--
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDL-NSVQLELKETVF-- 89 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~-- 89 (1237)
+.|.++|++|+|||++|++++... ....++.+.|+.+....+..+....+ ........-. .-..+.+....+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCCCCCeEecCchHHHHHHHHHhcc
Confidence 468889999999999999998865 34466777799998877765554322 1111111000 111122222222
Q ss_pred CCcEEEEEeCCCCCCh
Q 000887 90 KKKFLIVLDDVWSERY 105 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~ 105 (1237)
++++++|+|++...+.
T Consensus 271 ~~~~vliIDEINRani 286 (459)
T PRK11331 271 EKKYVFIIDEINRANL 286 (459)
T ss_pred cCCcEEEEehhhccCH
Confidence 3689999999966543
No 176
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.81 E-value=0.014 Score=67.52 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=72.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC----CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA----FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
++-+.++|++|+|||++|+++++...... .....|+.+.... +.... .+. ............++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----Ll~ky---vGe---te~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----LLNKY---VGE---TERQIRLIFQRAREKA 285 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----hcccc---cch---HHHHHHHHHHHHHHHh
Confidence 45689999999999999999988542221 2234455443221 11000 000 0001111222222211
Q ss_pred -cCCcEEEEEeCCCCCC-------hhh-----HHHhhccccC--CCCCcEEEEEeCchhHHH-hh----cCCCeEeCCCC
Q 000887 89 -FKKKFLIVLDDVWSER-------YDL-----WQALKSPFMA--GAPGSRIIVTTRSMDVAL-TM----GSGKNYELKLL 148 (1237)
Q Consensus 89 -~~~~~LlvlDdv~~~~-------~~~-----~~~~~~~~~~--~~~~~~iliTtR~~~~~~-~~----~~~~~~~l~~l 148 (1237)
.+++++|+||+++..- ..+ ...+...+.. ...+..||.||....... .+ .-+..++++..
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCC
Confidence 2468999999995310 001 1122222211 123444555665443221 11 12346899999
Q ss_pred ChhhhHHHHHHHhc
Q 000887 149 SDDDCWSVFVAHAF 162 (1237)
Q Consensus 149 ~~~ea~~l~~~~~~ 162 (1237)
+.++..++|+.+..
T Consensus 366 d~e~r~~Il~~~l~ 379 (512)
T TIGR03689 366 DAEAAADIFSKYLT 379 (512)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998863
No 177
>PRK06921 hypothetical protein; Provisional
Probab=96.81 E-value=0.0047 Score=65.94 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEE
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV 50 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~ 50 (1237)
..-+.++|..|+|||.||.++++...+.....++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 45789999999999999999988655442345677764
No 178
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.025 Score=62.82 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
......|.+.|++|+|||+||..++. ...|+-+=-++ ..+ + .+.. +......+...+.+..+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~---~S~FPFvKiiS---pe~---m-------iG~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL---SSDFPFVKIIS---PED---M-------IGLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh---hcCCCeEEEeC---hHH---c-------cCcc--HHHHHHHHHHHHHHhhc
Confidence 34566778999999999999999876 45676333332 111 0 0111 11222333344455556
Q ss_pred CCcEEEEEeCCCCCChhhH------------HHhhcc---ccCCCCCcEEEEEeCchhHHHhhcCC----CeEeCCCCCh
Q 000887 90 KKKFLIVLDDVWSERYDLW------------QALKSP---FMAGAPGSRIIVTTRSMDVALTMGSG----KNYELKLLSD 150 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~------------~~~~~~---~~~~~~~~~iliTtR~~~~~~~~~~~----~~~~l~~l~~ 150 (1237)
..--.||+||+.. ..+| .++... .++.+..--|+-||..+.+...|+-. ..+.++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6778999999933 2222 222222 23333333355577777777766432 4788888877
Q ss_pred -hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHc
Q 000887 151 -DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKC 184 (1237)
Q Consensus 151 -~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 184 (1237)
++..+.+...- .-.+.+.+.++.+...++
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77777776542 222334455555555555
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.80 E-value=0.023 Score=58.04 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
.-|-++|..|+|||++++++.+..
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHH
Confidence 467889999999999999988753
No 180
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.80 E-value=0.0088 Score=74.46 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCC-----CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
.-+.++|++|+|||++|..+++....... +..+|.. +...+. . ......+.++..+.+.+.+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a----~~~~~g~~e~~l~~i~~~~ 270 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----A----GTKYRGDFEERLKAVVSEI 270 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----h----hccccchHHHHHHHHHHHH
Confidence 34679999999999999999885432211 2233331 111111 0 0001123333333334333
Q ss_pred -cCCcEEEEEeCCCCCC--------hhhHHHhhccccCCCCCcEEEEEeCchhHHH------h-hcCCCeEeCCCCChhh
Q 000887 89 -FKKKFLIVLDDVWSER--------YDLWQALKSPFMAGAPGSRIIVTTRSMDVAL------T-MGSGKNYELKLLSDDD 152 (1237)
Q Consensus 89 -~~~~~LlvlDdv~~~~--------~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~------~-~~~~~~~~l~~l~~~e 152 (1237)
+.++.+|++|+++.-. ..+...+..+....+ .-++|-+|...+... . ......+++++++.++
T Consensus 271 ~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~ 349 (731)
T TIGR02639 271 EKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEE 349 (731)
T ss_pred hccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHH
Confidence 3468999999995210 011122222222221 234555544322110 1 1123578999999999
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
..++++...
T Consensus 350 ~~~il~~~~ 358 (731)
T TIGR02639 350 TVKILKGLK 358 (731)
T ss_pred HHHHHHHHH
Confidence 999998654
No 181
>PRK10536 hypothetical protein; Provisional
Probab=96.80 E-value=0.0074 Score=62.31 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEE--EcCCc-------CH----HHHHHHHHHHhhccCCCccCHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVC--VSDDF-------DV----LRISKAILDSIKRSSCKLEDLNS 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~--~~~~~-------~~----~~~~~~i~~~l~~~~~~~~~~~~ 79 (1237)
.+|.+.|.+|+|||+||.+++.+. ....|+.++... +.... +. .-.+.-+.+.+..-- .....+.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~ 153 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRL-GASFMQY 153 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHh-ChHHHHH
Confidence 489999999999999999987754 344455333321 10000 11 112222222222110 0011111
Q ss_pred HHH--------HHHHHhcCCc---EEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhH
Q 000887 80 VQL--------ELKETVFKKK---FLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 80 ~~~--------~l~~~l~~~~---~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~ 133 (1237)
... .-..+++++. -+||+|++..-+..+...+. -..+.++++|+|--..++
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEEEEeCChhhc
Confidence 100 0123556654 59999999766554444444 344679999999765433
No 182
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.80 E-value=0.0064 Score=69.28 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=71.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
..+-|.++|++|+|||++|+++++.. ...| +.+... + +.... .+ .........+.......
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el-~~~f-----i~V~~s-e---L~~k~---~G------e~~~~vr~lF~~A~~~~ 276 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET-SATF-----LRVVGS-E---LIQKY---LG------DGPKLVRELFRVAEENA 276 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-CCCE-----EEEecc-h---hhhhh---cc------hHHHHHHHHHHHHHhCC
Confidence 34568899999999999999998743 2222 222111 1 11110 00 11111222222233456
Q ss_pred cEEEEEeCCCCCC-----------hhh---HHHhhccccC--CCCCcEEEEEeCchhHHHhh-----cCCCeEeCCCCCh
Q 000887 92 KFLIVLDDVWSER-----------YDL---WQALKSPFMA--GAPGSRIIVTTRSMDVALTM-----GSGKNYELKLLSD 150 (1237)
Q Consensus 92 ~~LlvlDdv~~~~-----------~~~---~~~~~~~~~~--~~~~~~iliTtR~~~~~~~~-----~~~~~~~l~~l~~ 150 (1237)
+.+|++|+++... ... ...+...+.. ...+.+||+||......... .....++++..+.
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 8899999984210 000 1111111111 13456788888765443321 1235789999999
Q ss_pred hhhHHHHHHHhc
Q 000887 151 DDCWSVFVAHAF 162 (1237)
Q Consensus 151 ~ea~~l~~~~~~ 162 (1237)
++..++|..+..
T Consensus 357 ~~R~~Il~~~~~ 368 (438)
T PTZ00361 357 KTKRRIFEIHTS 368 (438)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.041 Score=60.15 Aligned_cols=160 Identities=10% Similarity=0.045 Sum_probs=91.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCe--------EEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPK--------AWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLE 83 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~--------~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 83 (1237)
..-..++|+.|+||+++|++++.... ....... -++..+..+|+..+ .........+++++..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~~~~~I~id~iR~l 95 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EPIDNKDIGVDQVREI 95 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------ccccCCCCCHHHHHHH
Confidence 45667899999999999999887542 1111000 01111111111100 0001122345555443
Q ss_pred HHHHh----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhhcC-CCeEeCCCCChhhhHHHH
Q 000887 84 LKETV----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTMGS-GKNYELKLLSDDDCWSVF 157 (1237)
Q Consensus 84 l~~~l----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~~~-~~~~~l~~l~~~ea~~l~ 157 (1237)
....- .+++=++|+|+++.-+.....++...+-.-++++.+|.+|... .+...+.+ ...+.+.+++++++.+.+
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 22221 2456788899996655555556666665555566666666554 34333322 368999999999999998
Q ss_pred HHHhcCCCCCCCCCChHHHHHHHHHHccCCch
Q 000887 158 VAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL 189 (1237)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 189 (1237)
..... .. ...+...++.++|.|.
T Consensus 176 ~~~~~-----~~----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 176 QAQSS-----AE----ISEILTALRINYGRPL 198 (325)
T ss_pred HHHhc-----cC----hHHHHHHHHHcCCCHH
Confidence 87541 11 2235677888999995
No 184
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=8e-05 Score=89.72 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=6.3
Q ss_pred CCccceeeccCCCC
Q 000887 854 NARLEVLRIKRCDS 867 (1237)
Q Consensus 854 ~~~L~~L~l~~c~~ 867 (1237)
+++|+.|.+.+|..
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 44444444444443
No 185
>PRK12377 putative replication protein; Provisional
Probab=96.77 E-value=0.0028 Score=66.35 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
..+.++|.+|+|||+||.++++...+.. ..++++++ .++...+-...... .... .+.+.+ .+-=
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g-~~v~~i~~------~~l~~~l~~~~~~~----~~~~----~~l~~l-~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG-RSVIVVTV------PDVMSRLHESYDNG----QSGE----KFLQEL-CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEEEH------HHHHHHHHHHHhcc----chHH----HHHHHh-cCCC
Confidence 5789999999999999999998655443 34677754 23444443332111 1111 122222 3567
Q ss_pred EEEEeCCCCCChhhHH--HhhccccCC-CCCcEEEEEeCc
Q 000887 94 LIVLDDVWSERYDLWQ--ALKSPFMAG-APGSRIIVTTRS 130 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~--~~~~~~~~~-~~~~~iliTtR~ 130 (1237)
|||+||+.......|. .+...+... ....-+||||-.
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999443323332 222222221 223347888864
No 186
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0045 Score=61.42 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=39.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-c-ccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK-L-TEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~-~-~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.|+|+|++|+||||||++++... . .-..|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 58999999999999999987643 1 123344444211 112233445555556666666
Q ss_pred EEEEEeCCC
Q 000887 93 FLIVLDDVW 101 (1237)
Q Consensus 93 ~LlvlDdv~ 101 (1237)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778873
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.043 Score=59.83 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=90.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHH---Hhhcc-CCCccCHHHHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILD---SIKRS-SCKLEDLNSVQLELKET 87 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~---~l~~~-~~~~~~~~~~~~~l~~~ 87 (1237)
-...+-++|+.|+||+++|.+++....-...... .++...+-..+...--- .+... ......+++++.. .+.
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~---~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l-~~~ 99 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSE---ACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQC-NRL 99 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHH-HHH
Confidence 3457889999999999999998775421111000 11111110000000000 00000 0122344554432 222
Q ss_pred h-----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhhcC-CCeEeCCCCChhhhHHHHHHH
Q 000887 88 V-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTMGS-GKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 88 l-----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~~~-~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
+ .++.-++|+|+++.-+.....++...+-.-++++.+|.+|.+ ..+...+.+ ...+.+.+++++++.+.+...
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred HhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc
Confidence 2 235668899999665555555566655544556665555544 444444333 358899999999999988653
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
. .+ .+..+++.++|.|+....
T Consensus 180 ~-------~~-----~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 180 G-------IT-----VPAYALKLNMGSPLKTLA 200 (319)
T ss_pred C-------Cc-----hHHHHHHHcCCCHHHHHH
Confidence 2 00 135678899999986543
No 188
>PRK04296 thymidine kinase; Provisional
Probab=96.73 E-value=0.0043 Score=62.84 Aligned_cols=114 Identities=12% Similarity=-0.014 Sum_probs=62.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC--ccCHHHHHHHHHHHhcCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCK--LEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~ 91 (1237)
.++.|+|..|.||||+|..++.+..... ..++.+. + ..+.......++.+++..... ....++....+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k-~-~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFK-P-AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEe-c-cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 4788999999999999999877543332 2334342 1 111111123344444432111 2334555555554 2334
Q ss_pred cEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhH
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~ 133 (1237)
.-+||+|.+.--..++..++...+ ...|..|++|.++...
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 568999999432223233333332 2457889999998543
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.0077 Score=65.92 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCC-eEEEEEcCC-cCHHHHHHHHHHHhhccCCCccC-----HHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSDD-FDVLRISKAILDSIKRSSCKLED-----LNSVQLELKE 86 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~l~~ 86 (1237)
..+.|+|.+|+|||||++++++.....+-+. ++|+.+++. .++.++.+.+...+......... +.+....+.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 3569999999999999999887544433344 356666544 57888888888776654321111 1111112222
Q ss_pred Hh--cCCcEEEEEeCC
Q 000887 87 TV--FKKKFLIVLDDV 100 (1237)
Q Consensus 87 ~l--~~~~~LlvlDdv 100 (1237)
++ ++++++||+|++
T Consensus 214 ~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 214 RLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHcCCCEEEEEeCc
Confidence 22 468999999999
No 190
>PRK04132 replication factor C small subunit; Provisional
Probab=96.69 E-value=0.04 Score=67.74 Aligned_cols=153 Identities=16% Similarity=0.058 Sum_probs=95.7
Q ss_pred Ec--CCCCcHHHHHHHHHhcccccCCC-CeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEEE
Q 000887 19 VG--MGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFLI 95 (1237)
Q Consensus 19 ~G--~~G~GKT~La~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 95 (1237)
.| |.|+||||+|.++++....+.++ .++-+++++......+...+ ..+...... -..+.-++
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~~--------------~~~~~KVv 634 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV-KEFARTKPI--------------GGASFKII 634 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCCc--------------CCCCCEEE
Confidence 36 67999999999998865443332 36677777655555444333 322211000 01245799
Q ss_pred EEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhhc-CCCeEeCCCCChhhhHHHHHHHhcCCCCCCCCCCh
Q 000887 96 VLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTMG-SGKNYELKLLSDDDCWSVFVAHAFEGRDAGTHGNF 173 (1237)
Q Consensus 96 vlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 173 (1237)
|+|+++.-+.++..++...+-.....+++|.++.+. .+..... ....+.+.+++.++-.+.+...+....... .
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~ 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----T 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----C
Confidence 999997766566666666655445567766665544 3322222 236899999999999888877664322111 2
Q ss_pred HHHHHHHHHHccCCchH
Q 000887 174 ESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 174 ~~~~~~i~~~~~g~PLa 190 (1237)
.+.+..|++.++|-+..
T Consensus 711 ~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 711 EEGLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 56788999999997744
No 191
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.69 E-value=0.0089 Score=74.89 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccC-----CCCeEE-EEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAW-VCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~-----f~~~~w-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
-+.++|.+|+|||++|..++....... ....+| ++++.- ........+.++....+.+..
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l--------------~ag~~~~ge~e~~lk~ii~e~ 275 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL--------------QAGASVKGEFENRLKSVIDEV 275 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh--------------hcccccchHHHHHHHHHHHHH
Confidence 467999999999999999887542221 112232 222110 000001112222222222222
Q ss_pred c--CCcEEEEEeCCCCCC-------hhhHHHhhccccCCCCCcEEEEEeCchhHHH-------hhcCCCeEeCCCCChhh
Q 000887 89 F--KKKFLIVLDDVWSER-------YDLWQALKSPFMAGAPGSRIIVTTRSMDVAL-------TMGSGKNYELKLLSDDD 152 (1237)
Q Consensus 89 ~--~~~~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~l~~~e 152 (1237)
. +++++|++|++.... ..+...+..+.... ..-++|-||...+... -......+.+++++.++
T Consensus 276 ~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~ 354 (852)
T TIGR03345 276 KASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEET 354 (852)
T ss_pred HhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHH
Confidence 2 468999999994321 11112233332222 2355666665432211 11223589999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 153 CWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 153 a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
+.++++.....-.......-..++...+++.+.++.
T Consensus 355 ~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 355 AIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 999976544211110111112455666666665543
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.04 Score=58.59 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-C
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF-K 90 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 90 (1237)
.++=|.++|++|.|||-||++|++.. . .-|+.+... ++.+..-. +.....+.+.+.-+ .
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T-~-----AtFIrvvgS--------ElVqKYiG------EGaRlVRelF~lArek 243 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT-D-----ATFIRVVGS--------ELVQKYIG------EGARLVRELFELAREK 243 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc-C-----ceEEEeccH--------HHHHHHhc------cchHHHHHHHHHHhhc
Confidence 34568899999999999999999842 2 223443222 22222211 11223333333333 3
Q ss_pred CcEEEEEeCCCCC-----------ChhhHH---HhhccccCC--CCCcEEEEEeCchhHHHhh-----cCCCeEeCCCCC
Q 000887 91 KKFLIVLDDVWSE-----------RYDLWQ---ALKSPFMAG--APGSRIIVTTRSMDVALTM-----GSGKNYELKLLS 149 (1237)
Q Consensus 91 ~~~LlvlDdv~~~-----------~~~~~~---~~~~~~~~~--~~~~~iliTtR~~~~~~~~-----~~~~~~~l~~l~ 149 (1237)
.+.+|.+|.++.. +.+.-. ++...+-.+ ..+.|||..|-..++.... .-+..++++.-+
T Consensus 244 aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd 323 (406)
T COG1222 244 APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCC
Confidence 6899999999531 001111 122222222 3567899888765544221 223578888666
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchH
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
.+.-.++|+-++.+ .....+-+ .+.+++.+.|.-=|
T Consensus 324 ~~gR~~Il~IHtrk-M~l~~dvd----~e~la~~~~g~sGA 359 (406)
T COG1222 324 EEGRAEILKIHTRK-MNLADDVD----LELLARLTEGFSGA 359 (406)
T ss_pred HHHHHHHHHHHhhh-ccCccCcC----HHHHHHhcCCCchH
Confidence 67777888887632 22222222 35778888776533
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.67 E-value=0.0034 Score=63.07 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcC--CcCHHH-----------HHHHHHHHhhccCCCccCHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSD--DFDVLR-----------ISKAILDSIKRSSCKLEDLNS 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~--~~~~~~-----------~~~~i~~~l~~~~~~~~~~~~ 79 (1237)
.+|.+.|++|.|||.||.+.+.+. ....|+.++++.-.- +.+.-. ...-+.+.+..-. .....++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-~~~~~~~ 98 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-GKEKLEE 98 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS--TTCHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-ChHhHHH
Confidence 589999999999999999987765 567788777775321 111111 1111122221110 1112222
Q ss_pred HHHH------HHHHhcC---CcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhH
Q 000887 80 VQLE------LKETVFK---KKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 80 ~~~~------l~~~l~~---~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~ 133 (1237)
.... -..++++ ....||+|++.+....++..+. -..+.|||++++--..+.
T Consensus 99 ~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 99 LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEEEE-----
T ss_pred HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEEEecCceee
Confidence 2110 0123344 3679999999776555555554 445779999999865433
No 194
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.005 Score=65.59 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
..+.|+|++|+|||+||.+++.......+ .+.+++ ..++...+...... .. ....+.+. ....-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCCC
Confidence 46789999999999999999764433333 344553 22333333222111 11 11222222 23556
Q ss_pred EEEEeCCCCCChhhHH--HhhccccCC-CCCcEEEEEeCch
Q 000887 94 LIVLDDVWSERYDLWQ--ALKSPFMAG-APGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~--~~~~~~~~~-~~~~~iliTtR~~ 131 (1237)
++|+||+.-....... .+...+... ..+ .+||||...
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 9999999543222221 222222211 223 488888753
No 195
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.63 E-value=0.0063 Score=58.34 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=64.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC---cCHHHHHHHHHHHh-----hccC-CCccCHHH-----
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD---FDVLRISKAILDSI-----KRSS-CKLEDLNS----- 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~~~l-----~~~~-~~~~~~~~----- 79 (1237)
.+|-|++..|.|||++|...+-+.....+. +.++-+-.. ......++.+ ..+ +... ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 478899999999999999987755555554 444433332 2222222222 000 0000 00011111
Q ss_pred --HHHHHHHHhcC-CcEEEEEeCCCC---CChhhHHHhhccccCCCCCcEEEEEeCchhH
Q 000887 80 --VQLELKETVFK-KKFLIVLDDVWS---ERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 80 --~~~~l~~~l~~-~~~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~ 133 (1237)
.....++.+.. .-=|+|+|++-- -.....+++...+...+.+..||+|.|+..-
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 22223333333 456999999832 1223345566666667778899999998654
No 196
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.052 Score=59.81 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEE-EEeCchhHHHhhc-CCCeEeCCCCChhhhHHHHHHHhcCCCCC
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVALTMG-SGKNYELKLLSDDDCWSVFVAHAFEGRDA 167 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~il-iTtR~~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 167 (1237)
+++-++|+|+++.-+......+...+-.-++++.+| +|++...+...+. ....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~------ 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG------ 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC------
Confidence 356688899997666566666666665545566554 5555444443332 23688999999999999987641
Q ss_pred CCCCChHHHHHHHHHHccCCchHH
Q 000887 168 GTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 168 ~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
.. + ...++..++|.|...
T Consensus 205 ~~-~-----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 205 VA-D-----ADALLAEAGGAPLAA 222 (342)
T ss_pred CC-h-----HHHHHHHcCCCHHHH
Confidence 11 1 224577889999643
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.58 E-value=0.025 Score=60.70 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHH
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 59 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 59 (1237)
-|.+.|++|+|||++|++++.. .. ...+++++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~-lg---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK-RD---RPVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH-hC---CCEEEEeCCccCCHHHH
Confidence 4678999999999999998763 21 12445555554444433
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0089 Score=68.86 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=79.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
=++++.+|++|||||.+|+.++....+++| .++++.-.|+.++-.. +..-...-+...+..++.. +-..
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvAeIkGH------RRTYVGAMPGkiIq~LK~v-~t~N 506 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVAEIKGH------RRTYVGAMPGKIIQCLKKV-KTEN 506 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHHhhccc------ceeeeccCChHHHHHHHhh-CCCC
Confidence 389999999999999999999986555554 3566666665544311 1111233445555555544 3356
Q ss_pred EEEEEeCCCC----CChhhHHHhhccccCCCC-------------CcEEEEE-eCch--hHH-HhhcCCCeEeCCCCChh
Q 000887 93 FLIVLDDVWS----ERYDLWQALKSPFMAGAP-------------GSRIIVT-TRSM--DVA-LTMGSGKNYELKLLSDD 151 (1237)
Q Consensus 93 ~LlvlDdv~~----~~~~~~~~~~~~~~~~~~-------------~~~iliT-tR~~--~~~-~~~~~~~~~~l~~l~~~ 151 (1237)
=|+.+|.|+. .+.+..+++...+.+..+ =|||++. |-+. .+. .......+|++.+...+
T Consensus 507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~e 586 (906)
T KOG2004|consen 507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAE 586 (906)
T ss_pred ceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHH
Confidence 6778899853 222344455444433221 2566643 3321 011 11122357888888888
Q ss_pred hhHHHHHHHh
Q 000887 152 DCWSVFVAHA 161 (1237)
Q Consensus 152 ea~~l~~~~~ 161 (1237)
|-+++-.++.
T Consensus 587 EKv~IA~~yL 596 (906)
T KOG2004|consen 587 EKVKIAERYL 596 (906)
T ss_pred HHHHHHHHhh
Confidence 8777665544
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.054 Score=59.94 Aligned_cols=161 Identities=9% Similarity=0.029 Sum_probs=90.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCe--------EEEEEcCCcCHHHHHHHHHHHhhccCC-CccCHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPK--------AWVCVSDDFDVLRISKAILDSIKRSSC-KLEDLNSVQ 81 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~--------~w~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~ 81 (1237)
-..-..++|+.|+||+++|.+++....- ..-+.. -++..+..+|+..+ .+... ....+++++
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~~~~~~I~idqiR 94 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TPEKGKSSLGVDAVR 94 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecccccccCCHHHHH
Confidence 3456779999999999999998775421 111000 01111111111100 00000 123455554
Q ss_pred HHHHHHh----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCc-hhHHHhhc-CCCeEeCCCCChhhhHH
Q 000887 82 LELKETV----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVALTMG-SGKNYELKLLSDDDCWS 155 (1237)
Q Consensus 82 ~~l~~~l----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~-~~~~~~~~-~~~~~~l~~l~~~ea~~ 155 (1237)
......- .+++-++|+|+++.-+......+...+-.-+.++.+|.+|.. ..+...+. ....+.+.+++++++.+
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~ 174 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALT 174 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHH
Confidence 4333221 246778999999665555555566655444456655555544 44443432 23578899999999998
Q ss_pred HHHHHhcCCCCCCCCCChHHHHHHHHHHccCCch
Q 000887 156 VFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL 189 (1237)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 189 (1237)
.+....+ . ..+.+..+++.++|.|.
T Consensus 175 ~L~~~~~-----~----~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 175 WLSREVT-----M----SQDALLAALRLSAGAPG 199 (334)
T ss_pred HHHHccC-----C----CHHHHHHHHHHcCCCHH
Confidence 8865321 1 13346788999999995
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.57 E-value=0.00078 Score=67.65 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCCCccEEEcccccccc-----ccccccCCCCCCeEEccCCCcc----ccc-------hhhcccCCccEEEcCccccCcc
Q 000887 398 QCKKLRVLSLGSYCITE-----VPISIGCLKQLRYLNFSRSEIQ----CLP-------DAICSLFNLEILILRNCWCLLK 461 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~~ 461 (1237)
.+..+..++||||.|.. +...+.+-.+|++-+++.-... .+| +.+-++++|+..+||.|-.-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 48889999999999873 4455677788999998864221 333 3467889999999999844444
Q ss_pred CChh----hcccccccEEeccCCC
Q 000887 462 LPSR----IGNLVNLHYLNIEGAS 481 (1237)
Q Consensus 462 lp~~----i~~L~~L~~L~l~~~~ 481 (1237)
.|+. |++-+.|.||.+.+|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 5544 4677889999999884
No 201
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.024 Score=62.50 Aligned_cols=147 Identities=15% Similarity=0.073 Sum_probs=72.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc--ccCC---CC-----eEEEEEcCCcCHHHHHHHHH-HHhhccCCCccCHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL--TEAF---EP-----KAWVCVSDDFDVLRISKAIL-DSIKRSSCKLEDLNSVQ 81 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~--~~~f---~~-----~~w~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~ 81 (1237)
..-+.++|+.|+|||++|..++.... ...- .+ +.++..+..+|+..+.-+-. ..-+ .......+++++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g-~~~~~I~id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENG-RKLLQIKIDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccc-ccCCCcCHHHHH
Confidence 45678999999999999999877542 1100 00 00111111111110000000 0000 000112455555
Q ss_pred HHHHHHh----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhhc-CCCeEeCCCCChhhhHH
Q 000887 82 LELKETV----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTMG-SGKNYELKLLSDDDCWS 155 (1237)
Q Consensus 82 ~~l~~~l----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~~-~~~~~~l~~l~~~ea~~ 155 (1237)
......- .+++-++|+|+++.-+......+...+-....++.+|++|.+.. +..... ....+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 4332221 13444556688855444444444444433334566777777654 332222 22578899999999998
Q ss_pred HHHHH
Q 000887 156 VFVAH 160 (1237)
Q Consensus 156 l~~~~ 160 (1237)
.+...
T Consensus 180 ~L~~~ 184 (325)
T PRK08699 180 YLRER 184 (325)
T ss_pred HHHhc
Confidence 88653
No 202
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.016 Score=63.63 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=53.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
.++++|+++|++|+||||++..++.......+ .+..++.+... ....-+...+..++.+.....+.++....+...-.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 34689999999999999999999875443333 35566654433 11222233444444433233455666655554422
Q ss_pred C-CcEEEEEeCCCC
Q 000887 90 K-KKFLIVLDDVWS 102 (1237)
Q Consensus 90 ~-~~~LlvlDdv~~ 102 (1237)
. +-=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 345778888744
No 203
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.53 E-value=0.012 Score=74.39 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCC-----CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh-
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV- 88 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 88 (1237)
-+.++|++|+|||++|..++.......- +..+|.- +...+. ... .-..+.++....+.+.+
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~-------ag~-~~~ge~e~rl~~i~~~~~ 268 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL-------AGT-KYRGEFEERLKRIFDEIQ 268 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh-------ccC-CCccHHHHHHHHHHHHHH
Confidence 4679999999999999998875432211 2334431 111111 111 11123333333333333
Q ss_pred cCCcEEEEEeCCCCC-------ChhhHHHhhccccCCCCCcEEEEEeCchhHHHh-------hcCCCeEeCCCCChhhhH
Q 000887 89 FKKKFLIVLDDVWSE-------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT-------MGSGKNYELKLLSDDDCW 154 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~-------~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~~l~~~ea~ 154 (1237)
..++.+|++|+++.- .......+..+.... ..-++|.+|...+.... ......+.++..+.+|+.
T Consensus 269 ~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~ 347 (821)
T CHL00095 269 ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETI 347 (821)
T ss_pred hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHH
Confidence 346899999999421 001122233222222 23456666665543211 122256888899999988
Q ss_pred HHHHHH
Q 000887 155 SVFVAH 160 (1237)
Q Consensus 155 ~l~~~~ 160 (1237)
.+++..
T Consensus 348 aILr~l 353 (821)
T CHL00095 348 EILFGL 353 (821)
T ss_pred HHHHHH
Confidence 888654
No 204
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.51 E-value=0.008 Score=65.49 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.+-+.++|..|+|||.||.++++...+..+. +.++++ ..+...+...... ....+ .+.. + .+-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~------~~l~~~lk~~~~~-----~~~~~---~l~~-l-~~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHF------PEFIRELKNSISD-----GSVKE---KIDA-V-KEA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEH------HHHHHHHHHHHhc-----CcHHH---HHHH-h-cCC
Confidence 4568999999999999999999866554444 566654 2344444444321 11222 2222 2 256
Q ss_pred EEEEEeCCCCCChhhHHH--hhcccc-CC-CCCcEEEEEeCc
Q 000887 93 FLIVLDDVWSERYDLWQA--LKSPFM-AG-APGSRIIVTTRS 130 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~~~--~~~~~~-~~-~~~~~iliTtR~ 130 (1237)
=|||+||+.......|.. +...+. .. ..+-.++|||-.
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 689999996554455542 333332 12 245568888864
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.49 E-value=0.0079 Score=63.73 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcc--cccCCCCeEEE----EEcCC---------cCHHHHHHHHHHHhhccCCCc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK--LTEAFEPKAWV----CVSDD---------FDVLRISKAILDSIKRSSCKL 74 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~--~~~~f~~~~w~----~~~~~---------~~~~~~~~~i~~~l~~~~~~~ 74 (1237)
++++..|.+.|.+|.|||.||.++.-.. .++.|..++-. .++++ ..+.-..+.|.+-+..-....
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 3567899999999999999998864332 56667655422 12211 112233344444333221111
Q ss_pred cCHHHHHHHHH----------HHhcC---CcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh
Q 000887 75 EDLNSVQLELK----------ETVFK---KKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD 132 (1237)
Q Consensus 75 ~~~~~~~~~l~----------~~l~~---~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~ 132 (1237)
...++....+. .+.++ .+.++|+|.+.+-+..+...+ +-..+.|+||+.|---.+
T Consensus 322 ~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 322 EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCCCEEEEcCCHHH
Confidence 11122222221 12234 367999999977655554444 344688999999876443
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.45 E-value=0.0099 Score=61.77 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 61 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 61 (1237)
=+++.|+|.+|+|||++|.+++....+ ....++|++... .+...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC-CCHHHHHH
Confidence 478999999999999999998764333 345688998865 45544443
No 207
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.44 E-value=0.031 Score=66.43 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=82.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
++-+.++|++|+|||++|++++... ... ++.++ ...+.... .+ .........+.......+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~-~~~-----~~~i~----~~~~~~~~---~g------~~~~~l~~~f~~a~~~~p 148 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA-GVP-----FFSIS----GSDFVEMF---VG------VGASRVRDLFEQAKKNAP 148 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc-CCC-----eeecc----HHHHHHHH---hc------ccHHHHHHHHHHHHhcCC
Confidence 4558899999999999999998742 111 22221 11111111 00 111223333444444578
Q ss_pred EEEEEeCCCCCC----------hhhHH----Hhhcccc--CCCCCcEEEEEeCchhHHH-hh----cCCCeEeCCCCChh
Q 000887 93 FLIVLDDVWSER----------YDLWQ----ALKSPFM--AGAPGSRIIVTTRSMDVAL-TM----GSGKNYELKLLSDD 151 (1237)
Q Consensus 93 ~LlvlDdv~~~~----------~~~~~----~~~~~~~--~~~~~~~iliTtR~~~~~~-~~----~~~~~~~l~~l~~~ 151 (1237)
.+|++|+++.-. ..... .+...+. ....+..||.||....... .+ .-...+.++..+.+
T Consensus 149 ~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~ 228 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIK 228 (495)
T ss_pred CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHH
Confidence 999999994310 00111 1111111 1223445666665543211 11 12357889999999
Q ss_pred hhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCC-chHHHHH
Q 000887 152 DCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGL-PLAARAL 194 (1237)
Q Consensus 152 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 194 (1237)
+-.++++.+....... . ......+++.+.|. +-.|..+
T Consensus 229 ~R~~il~~~l~~~~~~-~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 229 GREEILKVHAKNKKLA-P----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHHHHhcCCCC-c----chhHHHHHHhCCCCCHHHHHHH
Confidence 9999998876432211 1 12245788888764 4445444
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.0049 Score=65.24 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
..-+.++|.+|+|||.||.+++++.. ..-..+.+++ ..++..++...... ......+.+.+ .+-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l-~~~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLREL-KKV 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHh-hcC
Confidence 34689999999999999999998766 3333466774 33445555544432 11111222222 244
Q ss_pred EEEEEeCCCCCChhhH
Q 000887 93 FLIVLDDVWSERYDLW 108 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~ 108 (1237)
=|||+||+--.....|
T Consensus 169 dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 169 DLLIIDDIGYEPFSQE 184 (254)
T ss_pred CEEEEecccCccCCHH
Confidence 5889999955433433
No 209
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.43 E-value=0.0011 Score=80.06 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=81.3
Q ss_pred CCCcccEEeccCCCCccccCCC---CCCCCcCceEecCCCCcccccccccCCCCCCceEEEcCCCCceeccCCCCccccC
Q 000887 1060 TLSSLRELALSECPGIVVFPEE---GLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILP 1136 (1237)
Q Consensus 1060 ~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 1136 (1237)
.-.+|++|+++|...+..-+.. ..+|+|+.|.+.+-....+-......++++|..||||++ +++.+. +...+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~----GIS~L 194 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLS----GISRL 194 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcH----HHhcc
Confidence 3457888888875433222211 347888888888855543222224667888888888885 566553 33467
Q ss_pred CCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCCCccc-------CCCCCCCCcccEeeecCCC
Q 000887 1137 TSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTS-------FPEAGFPSSLLSLEIQRCP 1196 (1237)
Q Consensus 1137 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~-------l~~~~~~~sL~~L~i~~cp 1196 (1237)
++|+.|.+.+.+....-....+-+|++|+.||++.-..... +.-+..+|.|+.||.++..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78888888775433322223455688888888886332221 1112347888888888754
No 210
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.03 Score=63.83 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFL 94 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 94 (1237)
++.|.|+=++||||+++.+....... .+++...+......-..+....+ .+.-..++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~l~d~~~~~-----------------~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIELLDLLRAY-----------------IELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhhHHHHHHHH-----------------HHhhccCCce
Confidence 99999999999999997655532232 56665444322111111221111 1111127789
Q ss_pred EEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHh-----h-cCCCeEeCCCCChhhhHHHH
Q 000887 95 IVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT-----M-GSGKNYELKLLSDDDCWSVF 157 (1237)
Q Consensus 95 lvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~-----~-~~~~~~~l~~l~~~ea~~l~ 157 (1237)
+++|.|.. ...|......+...++. +|+||+-+...... . +....+++-||+..|-..+-
T Consensus 98 ifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 98 IFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999944 47788877777776666 89999887654321 1 22357899999998887654
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.004 Score=60.21 Aligned_cols=99 Identities=22% Similarity=0.293 Sum_probs=60.1
Q ss_pred CCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcc-cCCccEEEcCccccCccCChh--hcccccccEEe
Q 000887 400 KKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICS-LFNLEILILRNCWCLLKLPSR--IGNLVNLHYLN 476 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~ 476 (1237)
...-.+||++|.+..++. |..+..|..|.|.+|+|..+.+.+.. +++|..|.|.+| ++..+.+- +..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 344567777777766665 56677777777777777777444433 456777777776 55444321 45566777777
Q ss_pred ccCCCccccCcc----cccccccccccce
Q 000887 477 IEGASALRELPL----GMKELKCLRTLTN 501 (1237)
Q Consensus 477 l~~~~~l~~ip~----~~~~L~~L~~L~~ 501 (1237)
+-+| ....-+. -+-++++|++|+.
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeeh
Confidence 7666 3333322 1456666666654
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.029 Score=64.70 Aligned_cols=161 Identities=16% Similarity=0.078 Sum_probs=89.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC--cCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
.-|.|.|+.|+|||+||++++....++.+-.+.+++++.- .+.+.+++.+.. .+.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~~~ 494 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALWYA 494 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHhhC
Confidence 4578999999999999999988656665555667776533 344445444332 233455668
Q ss_pred cEEEEEeCCCCC------ChhhHH-----------HhhccccCCCCCcEEEEEeCchhHHH-hhcC----CCeEeCCCCC
Q 000887 92 KFLIVLDDVWSE------RYDLWQ-----------ALKSPFMAGAPGSRIIVTTRSMDVAL-TMGS----GKNYELKLLS 149 (1237)
Q Consensus 92 ~~LlvlDdv~~~------~~~~~~-----------~~~~~~~~~~~~~~iliTtR~~~~~~-~~~~----~~~~~l~~l~ 149 (1237)
+-+||+||++.. +-.+++ ++...+...+..-++|.|........ .... ..+..++.+.
T Consensus 495 PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 495 PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 999999999421 001111 11111111222223455554432221 1111 1367788888
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccC-CchHHHHHH
Q 000887 150 DDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKG-LPLAARALG 195 (1237)
Q Consensus 150 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~ 195 (1237)
..+-.++++......- .....+...-++.+++| .|.-+.+..
T Consensus 575 ~~~R~~IL~~~~s~~~----~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNL----SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhHHHHHHHHHHHhhh----hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 8888888876543211 11112333447777766 455555543
No 213
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.38 E-value=0.088 Score=65.71 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-CC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF-KK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 91 (1237)
..++.++|+.|+|||.+|+.+++.. +...+.++.+...+. ..+...++.+.. ....++ ...+.+.++ ..
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~----~~~~~lig~~~g-yvg~~~-~~~l~~~~~~~p 553 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEK----HTVSRLIGAPPG-YVGFEQ-GGLLTEAVRKHP 553 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhc----ccHHHHhcCCCC-Ccccch-hhHHHHHHHhCC
Confidence 3468899999999999999998743 233456655442221 112222232221 111111 112233333 34
Q ss_pred cEEEEEeCCCCCChhhHHHhhccc
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPF 115 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~ 115 (1237)
..+++||+++..+.+....+...+
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhh
Confidence 579999999776666555555544
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.0086 Score=62.58 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
...+.++|.+|+|||+||.++++...+.. ..+++++ ..++...+-..... .....+ .+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-cC
Confidence 35789999999999999999988654433 3466664 34444444333321 111112 2333344 34
Q ss_pred EEEEEeCCCCCChhhHHH--hhccccCC-CCCcEEEEEeCc
Q 000887 93 FLIVLDDVWSERYDLWQA--LKSPFMAG-APGSRIIVTTRS 130 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~~~--~~~~~~~~-~~~~~iliTtR~ 130 (1237)
=+||+||+.......|.. +...+... .....+||||-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 478889996544444442 21111111 223457788764
No 215
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00026 Score=71.26 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChh--hcccccccEE
Q 000887 398 QCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSR--IGNLVNLHYL 475 (1237)
Q Consensus 398 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L 475 (1237)
.+.+.+.|++.||.++.+.- ..+++.|++|.|+-|.|+.+. .+..+++|+.|.|+.| .|..+.+- +.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 35567788888888887754 357888999999999988884 4888889999999888 66666553 3678888888
Q ss_pred eccCCCccccCccc-----ccccccccccce
Q 000887 476 NIEGASALRELPLG-----MKELKCLRTLTN 501 (1237)
Q Consensus 476 ~l~~~~~l~~ip~~-----~~~L~~L~~L~~ 501 (1237)
.|..|.....-+.. +..|++|++|+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88877544444432 556677777754
No 216
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.34 E-value=0.022 Score=69.93 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccC-----CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh-
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV- 88 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 88 (1237)
-+.++|++|+|||++|+.++....... .+..+|.. +...+ .. ...-..+.++....+.+.+
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la----G~~~~Ge~e~rl~~l~~~l~ 275 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA----GTKYRGDFEKRFKALLKQLE 275 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc----ccchhhhHHHHHHHHHHHHH
Confidence 456899999999999999887543222 12333321 11111 10 1001123333333333333
Q ss_pred cCCcEEEEEeCCCCC--------ChhhHHHhhccccCCCCCcEEEEEeCchhHHH-------hhcCCCeEeCCCCChhhh
Q 000887 89 FKKKFLIVLDDVWSE--------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAL-------TMGSGKNYELKLLSDDDC 153 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~--------~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~l~~~ea 153 (1237)
+.++.+|++|+++.- ...+...+..++... ..-++|-+|...+... .......+.+++.+.+++
T Consensus 276 ~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 276 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 346789999999421 111222233333322 2344555554433211 112235799999999999
Q ss_pred HHHHHHHh
Q 000887 154 WSVFVAHA 161 (1237)
Q Consensus 154 ~~l~~~~~ 161 (1237)
.++++...
T Consensus 355 ~~IL~~~~ 362 (758)
T PRK11034 355 VQIINGLK 362 (758)
T ss_pred HHHHHHHH
Confidence 99998654
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.34 E-value=0.0021 Score=61.75 Aligned_cols=83 Identities=25% Similarity=0.213 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEEE
Q 000887 16 IPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFLI 95 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 95 (1237)
|.|+|++|+|||++|+.+++.. -...+-+.+....+..++....--.-+.........-+ .+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~---a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVR---AM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCT---TH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh----hcceEEEEeccccccccceeeeeecccccccccccccc---cc-----cceeEE
Confidence 6799999999999999998753 11233566677667665553221110000000000000 00 178999
Q ss_pred EEeCCCCCChhhHHH
Q 000887 96 VLDDVWSERYDLWQA 110 (1237)
Q Consensus 96 vlDdv~~~~~~~~~~ 110 (1237)
|+|++.......+..
T Consensus 70 ~lDEin~a~~~v~~~ 84 (139)
T PF07728_consen 70 VLDEINRAPPEVLES 84 (139)
T ss_dssp EESSCGG--HHHHHT
T ss_pred EECCcccCCHHHHHH
Confidence 999996544333333
No 218
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.33 E-value=0.031 Score=64.89 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=79.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
.++-|.++|++|+|||.+|+++++.. ... .+-++.+ .+.. .. ...........+...-...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~-~~~---~~~l~~~------~l~~----~~-----vGese~~l~~~f~~A~~~~ 318 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW-QLP---LLRLDVG------KLFG----GI-----VGESESRMRQMIRIAEALS 318 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-CCC---EEEEEhH------Hhcc----cc-----cChHHHHHHHHHHHHHhcC
Confidence 45678999999999999999998742 111 1222211 1110 00 0011112222222222347
Q ss_pred cEEEEEeCCCCCC-------hh-hH----HHhhccccCCCCCcEEEEEeCchhHHH-hh----cCCCeEeCCCCChhhhH
Q 000887 92 KFLIVLDDVWSER-------YD-LW----QALKSPFMAGAPGSRIIVTTRSMDVAL-TM----GSGKNYELKLLSDDDCW 154 (1237)
Q Consensus 92 ~~LlvlDdv~~~~-------~~-~~----~~~~~~~~~~~~~~~iliTtR~~~~~~-~~----~~~~~~~l~~l~~~ea~ 154 (1237)
+++|++|+++..- .. .. ..+...+.....+.-||.||....... .+ .-+..+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 8999999995310 00 00 111111222233445666776543211 11 22357888888999999
Q ss_pred HHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 155 SVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
++|+.+..+....... ......+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 9999887543211110 112456777766543
No 219
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.32 E-value=0.0046 Score=59.77 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=69.6
Q ss_pred hhcCCCCCccEEEccccccccccccc-cCCCCCCeEEccCCCccccch--hhcccCCccEEEcCccccCccCCh----hh
Q 000887 394 DLLPQCKKLRVLSLGSYCITEVPISI-GCLKQLRYLNFSRSEIQCLPD--AICSLFNLEILILRNCWCLLKLPS----RI 466 (1237)
Q Consensus 394 ~~~~~~~~Lr~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~----~i 466 (1237)
+-|+.++.|.+|.|.+|+|+.+.+.+ .-+++|..|.|.+|.|.++-+ .+..+++|++|.+-+| .+..-+. -+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl 136 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVL 136 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEE
Confidence 44788999999999999999996555 456779999999999987744 5788899999999998 4444332 26
Q ss_pred cccccccEEeccCC
Q 000887 467 GNLVNLHYLNIEGA 480 (1237)
Q Consensus 467 ~~L~~L~~L~l~~~ 480 (1237)
.++++|++||..+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 88999999999865
No 220
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.017 Score=67.13 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
++++++|++|||||.|++.++....+.+| .+.++.-.|...+... +..--.+-+..+.+.+++. +.+.=
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~Rkfv----R~sLGGvrDEAEIRGH------RRTYIGamPGrIiQ~mkka-~~~NP 419 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFV----RISLGGVRDEAEIRGH------RRTYIGAMPGKIIQGMKKA-GVKNP 419 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEE----EEecCccccHHHhccc------cccccccCChHHHHHHHHh-CCcCC
Confidence 79999999999999999999985444332 4566666565444311 1111223344555555544 44677
Q ss_pred EEEEeCCCCC----ChhhHHHhhccccCCCCC-------------cEEE-EEeCch-h-HH-HhhcCCCeEeCCCCChhh
Q 000887 94 LIVLDDVWSE----RYDLWQALKSPFMAGAPG-------------SRII-VTTRSM-D-VA-LTMGSGKNYELKLLSDDD 152 (1237)
Q Consensus 94 LlvlDdv~~~----~~~~~~~~~~~~~~~~~~-------------~~il-iTtR~~-~-~~-~~~~~~~~~~l~~l~~~e 152 (1237)
++++|.++.- ..+..+++...+.+..+. |+|+ |||-+. + +. ..+....++++.+.+++|
T Consensus 420 v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 420 VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHH
Confidence 8889999531 223344444444332111 3444 444432 1 11 122334689999999999
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
-.++-+++.
T Consensus 500 Kl~IAk~~L 508 (782)
T COG0466 500 KLEIAKRHL 508 (782)
T ss_pred HHHHHHHhc
Confidence 888776654
No 221
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.13 Score=56.96 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
...+.+-|.|-+|.|||.+...++.+.....- ..++++++..-....+++..|...+...........+....+.....
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 34567899999999999999998876432222 24578888776667777777777763222122222444445555544
Q ss_pred C--CcEEEEEeCCCCCChhhHHHhhccc-cCCCCCcEEEEEeC-ch-----hHHHhhc-----CCCeEeCCCCChhhhHH
Q 000887 90 K--KKFLIVLDDVWSERYDLWQALKSPF-MAGAPGSRIIVTTR-SM-----DVALTMG-----SGKNYELKLLSDDDCWS 155 (1237)
Q Consensus 90 ~--~~~LlvlDdv~~~~~~~~~~~~~~~-~~~~~~~~iliTtR-~~-----~~~~~~~-----~~~~~~l~~l~~~ea~~ 155 (1237)
+ ..+|+|+|..+.-.......+...+ ++.-+++++|+.-- +. ....++. ....+..++.+.++-.+
T Consensus 253 q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~ 332 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVE 332 (529)
T ss_pred cccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHH
Confidence 4 3689999998321101111122222 23345666543321 10 1111111 12577888999999999
Q ss_pred HHHHHhc
Q 000887 156 VFVAHAF 162 (1237)
Q Consensus 156 l~~~~~~ 162 (1237)
+|..+..
T Consensus 333 Il~~rl~ 339 (529)
T KOG2227|consen 333 ILQQRLS 339 (529)
T ss_pred HHHHHHh
Confidence 9998874
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.30 E-value=0.052 Score=53.26 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cC------------------CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EA------------------FEPKAWVCVSDDFDVLRISKAILDSIKRSSCK 73 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~------------------f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~ 73 (1237)
+..+.++|+.|+||+++|.+++..... .. ++.+.|+.-.... .
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~------------------~ 80 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK------------------K 80 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS------------------S
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc------------------c
Confidence 346789999999999999998875422 11 2233343222110 0
Q ss_pred ccCHHHHHHHHHHHh-----cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh-HHHhhcC-CCeEeCC
Q 000887 74 LEDLNSVQLELKETV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VALTMGS-GKNYELK 146 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~-~~~~~~~-~~~~~l~ 146 (1237)
....++.. .+.+.+ .++.=++|+||++.-+.....++...+-.-+.++.+|++|++.. +...... ...+.+.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 12334433 222222 23577899999977666777777777766667888888887664 3322222 2455555
Q ss_pred CC
Q 000887 147 LL 148 (1237)
Q Consensus 147 ~l 148 (1237)
++
T Consensus 160 ~l 161 (162)
T PF13177_consen 160 PL 161 (162)
T ss_dssp --
T ss_pred CC
Confidence 44
No 223
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=0.019 Score=68.43 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.++++|+|++|+||||+++.++..
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998874
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.28 E-value=0.013 Score=61.65 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLR 58 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~ 58 (1237)
=.++.|+|.+|+|||++|.+++....+ ....++|++.. ..+...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC-CCCHHH
Confidence 368999999999999999998774433 34568899877 444443
No 225
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.28 E-value=0.018 Score=60.72 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-----CCCeEEEEEcCCcCHHHHHHHHHHHhhccC---------CCccCHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSDDFDVLRISKAILDSIKRSS---------CKLEDLN 78 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 78 (1237)
-.++.|+|.+|+|||++|.+++....... -..++|++.....+...+. +++....... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 36899999999999999999876432222 1467899877665554433 2222221110 0223455
Q ss_pred HHHHHHHHHhc----CCcEEEEEeCC
Q 000887 79 SVQLELKETVF----KKKFLIVLDDV 100 (1237)
Q Consensus 79 ~~~~~l~~~l~----~~~~LlvlDdv 100 (1237)
+....+.+... .+.-++|+|.+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 55555555432 34568999998
No 226
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.0014 Score=66.76 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=50.8
Q ss_pred hhhhcCCCCCccEEEccccccccccccc-cCCCCCCeEEccCCCcc--ccchhhcccCCccEEEcCcc
Q 000887 392 LSDLLPQCKKLRVLSLGSYCITEVPISI-GCLKQLRYLNFSRSEIQ--CLPDAICSLFNLEILILRNC 456 (1237)
Q Consensus 392 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~ 456 (1237)
...++.++++|++|+|+.|.+..--..+ ..+.+|++|-|.++++. ..-.....++.++.|.++.|
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4456789999999999999865322222 35689999999999876 45557888999999999987
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.013 Score=64.24 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.-+.++|.+|+|||.||.++++...+..+ .|+|+++ .++...+...-. . ...+..+ . .+.+. .-=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~------~~l~~~l~~~~~-~--~~~~~~~---~-~~~l~-~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTA------DELIEILREIRF-N--NDKELEE---V-YDLLI-NCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEH------HHHHHHHHHHHh-c--cchhHHH---H-HHHhc-cCC
Confidence 56899999999999999999986655544 4677753 223333322111 1 1111111 1 22233 224
Q ss_pred EEEEeCCCCCChhhH--HHhhccccCC-CCCcEEEEEeCc
Q 000887 94 LIVLDDVWSERYDLW--QALKSPFMAG-APGSRIIVTTRS 130 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~--~~~~~~~~~~-~~~~~iliTtR~ 130 (1237)
|||+||+.......| ..+...+... ..+..+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 799999955432232 2233222221 234568888875
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=96.26 E-value=0.024 Score=62.21 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCC---CccCHHHH-HHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSC---KLEDLNSV-QLELK 85 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~ 85 (1237)
.++++|+++|++|+||||++..+++......+ .++.+...... ....-++..+..++.+.. ...++... ...+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 45789999999999999999998875444334 34455433221 122233445566654322 12233222 23333
Q ss_pred HHhcCCcEEEEEeCCCC
Q 000887 86 ETVFKKKFLIVLDDVWS 102 (1237)
Q Consensus 86 ~~l~~~~~LlvlDdv~~ 102 (1237)
.......-+|++|-+-.
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222333999999854
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.26 E-value=0.018 Score=62.28 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhccccc-CCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~-~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
..++++++|++|+||||++..++...... .-..+..++...... ....+...+..++.+.....+..+....+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999999988755333 223466776654332 12222333444444433344555555454443 3
Q ss_pred CCcEEEEEeCC
Q 000887 90 KKKFLIVLDDV 100 (1237)
Q Consensus 90 ~~~~LlvlDdv 100 (1237)
+ .=+|++|.+
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 457777754
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.015 Score=57.73 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF 54 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~ 54 (1237)
++.|+|.+|+|||++|..++..... .-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 4789999999999999998775433 33446788765553
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0027 Score=64.38 Aligned_cols=107 Identities=23% Similarity=0.208 Sum_probs=67.7
Q ss_pred hcCCCCCccEEEccccccccccccccCCCCCCeEEccCC--Ccc-ccchhhcccCCccEEEcCccccCcc---CChhhcc
Q 000887 395 LLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRS--EIQ-CLPDAICSLFNLEILILRNCWCLLK---LPSRIGN 468 (1237)
Q Consensus 395 ~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~ 468 (1237)
....+..|..|++.+..++.+.. +..|++|++|.++.| ++. .++-...++++|++|++++| .+.. +++ ...
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKE 114 (260)
T ss_pred ccccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhh
Confidence 34455666666676666665544 556778888888888 444 44444556688888888887 5543 222 456
Q ss_pred cccccEEeccCCCccccCcc----cccccccccccceeeec
Q 000887 469 LVNLHYLNIEGASALRELPL----GMKELKCLRTLTNFIVG 505 (1237)
Q Consensus 469 L~~L~~L~l~~~~~l~~ip~----~~~~L~~L~~L~~~~~~ 505 (1237)
+.+|..|++..|. ...+-. .+.-+++|..|+.+.+.
T Consensus 115 l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 LENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 7777888888773 333322 15566777777665544
No 232
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.023 Score=57.88 Aligned_cols=190 Identities=15% Similarity=0.167 Sum_probs=104.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccc-----cCCCCeEEEEEcCC---------------------cCHHHHHHHH
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLT-----EAFEPKAWVCVSDD---------------------FDVLRISKAI 63 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~-----~~f~~~~w~~~~~~---------------------~~~~~~~~~i 63 (1237)
.++.+-..++|++|.||-|.+..+.+.... -.-+..-|.+-+.. ..-+.+.+++
T Consensus 31 ~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 31 TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHH
Confidence 366788999999999999988887664311 11112223321111 0112334444
Q ss_pred HHHhhccCCCccCHHHHHHHHHHHhcCCcE-EEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhhcC-C
Q 000887 64 LDSIKRSSCKLEDLNSVQLELKETVFKKKF-LIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTMGS-G 140 (1237)
Q Consensus 64 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~~~-~ 140 (1237)
+..++-... .+ .-..+.+ ++|+-.+++-+.+.-.++....-.....+|+|+..-+- .+...... .
T Consensus 111 lKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 111 LKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhe
Confidence 444432210 00 0012333 45556665444555556666555556788887654321 11111222 2
Q ss_pred CeEeCCCCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCch-HHHHHHhH-hhcCC--------CHHHHHHH
Q 000887 141 KNYELKLLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPL-AARALGGL-LRSKQ--------GVDEWRAI 210 (1237)
Q Consensus 141 ~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~-l~~~~--------~~~~~~~~ 210 (1237)
-.+.+...+++|-...+.+.+...+-..+ .+.+.+|+++++|.-. ||-+.-+. +...+ ..-+|+-+
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~ 254 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIY 254 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHH
Confidence 46889999999999999988755444443 7889999999988643 43332211 11111 14578877
Q ss_pred Hhhcc
Q 000887 211 LDSKI 215 (1237)
Q Consensus 211 l~~~~ 215 (1237)
+.+..
T Consensus 255 i~e~a 259 (351)
T KOG2035|consen 255 IQEIA 259 (351)
T ss_pred HHHHH
Confidence 76543
No 233
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.18 E-value=0.049 Score=54.84 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEc--CCcCHHHHHH------HHHHHhhccC------CCccCHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS--DDFDVLRISK------AILDSIKRSS------CKLEDLNS 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~--~~~~~~~~~~------~i~~~l~~~~------~~~~~~~~ 79 (1237)
.+++|.|..|+|||||++.++... ....+.+++.-. ...+...... +++..++... ......+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 489999999999999999987632 223444544211 1112211111 1334443221 12233344
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCC-CC-CcEEEEEeCchhHHHh
Q 000887 80 VQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-AP-GSRIIVTTRSMDVALT 136 (1237)
Q Consensus 80 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~-~~~iliTtR~~~~~~~ 136 (1237)
..-.+.+.+-..+-++++|+-... +......+...+... .. +..||++|.+......
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 444566667778899999998432 112222333333221 12 5678899888766533
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.18 E-value=0.004 Score=58.07 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+|+|.|++|+||||+|+++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 235
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.17 E-value=0.02 Score=60.86 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc-cccC----CCCeEEEEEcCCcCHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK-LTEA----FEPKAWVCVSDDFDVLRI 59 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~-~~~~----f~~~~w~~~~~~~~~~~~ 59 (1237)
-.++.|+|.+|+|||++|.+++... .... ...++|++.....+...+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 4789999999999999999987543 2221 357889988776554433
No 236
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.035 Score=55.36 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHH-HHHHHHHhhccCCC------------ccCHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRI-SKAILDSIKRSSCK------------LEDLNSV 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~-~~~i~~~l~~~~~~------------~~~~~~~ 80 (1237)
.+++|.|+.|.|||||.+.++.-. ....+.+++.-. +.... .......++.-... ....+..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~--~~~~G~i~~~g~---~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY--DPTSGEILIDGV---DLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCE---EhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 478999999999999999987732 223444444211 11000 00111111110000 1112233
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHHH
Q 000887 81 QLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAL 135 (1237)
Q Consensus 81 ~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~ 135 (1237)
.-.+.+.+-.++-++++|+-... +......+...+.....+..||++|.+.....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 33455666678889999997542 11222223332222223567889998877654
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.15 E-value=0.027 Score=64.32 Aligned_cols=90 Identities=21% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCC---ccCHHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCK---LEDLNSVQLELKE 86 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 86 (1237)
..+.+|.++|.+|+||||+|..++....+..+ .+..+++.... ...+.+..++.+++.+... ..+..+......+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45789999999999999999999875444333 35555544322 2233445556665543221 1233333333333
Q ss_pred HhcCCcEEEEEeCCCC
Q 000887 87 TVFKKKFLIVLDDVWS 102 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv~~ 102 (1237)
..++. -+||+|-.-.
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 33333 5688888843
No 238
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.14 E-value=0.011 Score=64.16 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccC-----CCccCHHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSS-----CKLEDLNSVQLELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~ 87 (1237)
=+++-|+|++|+|||+||.+++....+ .-..++|++.....+.. .+.+++... ..+...++....+...
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 378999999999999999998764433 23457799776655442 344443221 1334566666666555
Q ss_pred hc-CCcEEEEEeCCC
Q 000887 88 VF-KKKFLIVLDDVW 101 (1237)
Q Consensus 88 l~-~~~~LlvlDdv~ 101 (1237)
.+ ...-+||+|.|-
T Consensus 129 i~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 129 VRSGAVDIIVVDSVA 143 (321)
T ss_pred hhccCCcEEEEcchh
Confidence 54 357799999983
No 239
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.13 E-value=0.065 Score=53.84 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=61.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc--c-------------CCCccCHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR--S-------------SCKLEDLN 78 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~~ 78 (1237)
.+++|.|..|+|||||++.++... ....+.+++.- .+.......+...++. + .......+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g---~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDG---VPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECC---EEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 378999999999999999987632 12234444421 1111111111111110 0 00112223
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHHH
Q 000887 79 SVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAL 135 (1237)
Q Consensus 79 ~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~ 135 (1237)
...-.+.+.+-.++=++++|+.... +......+...+.....+..||++|.+.....
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 3334455666678889999998542 11222222222222223677899998877654
No 240
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.13 E-value=0.011 Score=64.11 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccC-----CCccCHHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSS-----CKLEDLNSVQLELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~ 87 (1237)
=+++-|+|++|+|||+||.+++....+ .-..++|++.....+.. .+.+++... ..+.+.++....+...
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 468899999999999999998764322 34567899876665542 333333221 1344566666666555
Q ss_pred hcC-CcEEEEEeCC
Q 000887 88 VFK-KKFLIVLDDV 100 (1237)
Q Consensus 88 l~~-~~~LlvlDdv 100 (1237)
.+. ..-+||+|.|
T Consensus 129 i~s~~~~lIVIDSv 142 (325)
T cd00983 129 VRSGAVDLIVVDSV 142 (325)
T ss_pred HhccCCCEEEEcch
Confidence 543 5779999998
No 241
>PHA00729 NTP-binding motif containing protein
Probab=96.12 E-value=0.011 Score=60.13 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+...|+|+|.+|+|||+||.++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999875
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.07 E-value=0.021 Score=57.36 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=28.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEE
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC 49 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~ 49 (1237)
...+|++.|++|+||||+|++++... ...+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l-~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL-KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHcCCcEEEEe
Confidence 44699999999999999999988743 33455566653
No 243
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.06 E-value=0.06 Score=68.28 Aligned_cols=134 Identities=11% Similarity=0.045 Sum_probs=68.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccC-----CCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
.-+.++|++|+|||++|..++....... ....+|.. +...+. + ......+.++....+.+.+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~---a-----~~~~~g~~e~~l~~~l~~~ 261 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI---A-----GAKYRGEFEERLKAVLNEV 261 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh---h-----cchhhhhHHHHHHHHHHHH
Confidence 3567899999999999999887542211 11222221 111111 0 0001112233333333333
Q ss_pred c--CCcEEEEEeCCCCCC-------hhhHHHhhccccCCCCCcEEEEEeCchhHHH-------hhcCCCeEeCCCCChhh
Q 000887 89 F--KKKFLIVLDDVWSER-------YDLWQALKSPFMAGAPGSRIIVTTRSMDVAL-------TMGSGKNYELKLLSDDD 152 (1237)
Q Consensus 89 ~--~~~~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~l~~~e 152 (1237)
. +++.+|++|++..-. ..+...+..+.... ..-++|-+|...+... .......+.++..+.++
T Consensus 262 ~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~ 340 (852)
T TIGR03346 262 TKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVED 340 (852)
T ss_pred HhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHH
Confidence 2 368999999994311 01122233332222 2245555555443311 11223568899999999
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
..++++...
T Consensus 341 ~~~iL~~~~ 349 (852)
T TIGR03346 341 TISILRGLK 349 (852)
T ss_pred HHHHHHHHH
Confidence 999987654
No 244
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.04 E-value=0.098 Score=66.06 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC-Cc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK-KK 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~ 92 (1237)
.++.++|+.|+|||++|+.++...... ....+.++++.-... .....-++.+.. ....++ ...+.+.++. ..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-~~~~i~id~se~~~~----~~~~~LiG~~pg-y~g~~~-~g~l~~~v~~~p~ 671 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDS-DDAMVRIDMSEFMEK----HSVSRLVGAPPG-YVGYEE-GGYLTEAVRRRPY 671 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcC-CCcEEEEEhHHhhhh----hhHHHHhCCCCc-ccccch-hHHHHHHHHhCCC
Confidence 578899999999999999988643322 223445544322110 111222232211 111111 1122333333 34
Q ss_pred EEEEEeCCCCCChhhHHHhhccccCC-----------CCCcEEEEEeCc
Q 000887 93 FLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVTTRS 130 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~~~~~~~~~~~-----------~~~~~iliTtR~ 130 (1237)
.+|+||++...+.+.+..+...+..+ ..++-||+||..
T Consensus 672 ~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 79999999765555555554433221 123447778765
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.03 E-value=0.02 Score=59.91 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF 54 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~ 54 (1237)
-+++.|.|.+|+|||++|.+++....+. -..++|++.....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCC
Confidence 4789999999999999999987744333 3357788754443
No 246
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.015 Score=69.76 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
..+....|+.|||||.||++++...+... +..+.++.+.-. --..+.+-+|.+.. -..-++ .-.+-+..++++
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e-~aliR~DMSEy~----EkHsVSrLIGaPPG-YVGyee-GG~LTEaVRr~P 593 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDE-QALIRIDMSEYM----EKHSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKP 593 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCC-ccceeechHHHH----HHHHHHHHhCCCCC-Cceecc-ccchhHhhhcCC
Confidence 46778899999999999999988543222 344555544332 12334444454432 111122 223444556676
Q ss_pred E-EEEEeCCCCCChhhHHHhhccccC
Q 000887 93 F-LIVLDDVWSERYDLWQALKSPFMA 117 (1237)
Q Consensus 93 ~-LlvlDdv~~~~~~~~~~~~~~~~~ 117 (1237)
+ +|.||++...+.+....+.+.+-.
T Consensus 594 ySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 594 YSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred CeEEEechhhhcCHHHHHHHHHHhcC
Confidence 5 888999988777777766666554
No 247
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.00 E-value=0.036 Score=53.83 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeE--EEEEcCCcCHHHHHHHHHHH---hhcc-CCCccC-------HHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA--WVCVSDDFDVLRISKAILDS---IKRS-SCKLED-------LNS 79 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~--w~~~~~~~~~~~~~~~i~~~---l~~~-~~~~~~-------~~~ 79 (1237)
..+|-|++..|.||||.|..++.+.....+...+ |+--.........+....-. .+.. .....+ ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 3688899999999999999987755555554322 22222112222233222000 0110 001111 112
Q ss_pred HHHHHHHHhcC-CcEEEEEeCCCC---CChhhHHHhhccccCCCCCcEEEEEeCchhH
Q 000887 80 VQLELKETVFK-KKFLIVLDDVWS---ERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 80 ~~~~l~~~l~~-~~~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~ 133 (1237)
.....++.+.. .-=+||+|.+-. -.....+++...+...+.+..||+|-|+...
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 22233344433 456999999821 1223344555666667778899999998744
No 248
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.052 Score=59.53 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
.+.++++++|+.|+||||++..++....+.. ..+.+++.+.... ...-++..+..++.+.....++++....+...-.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4568999999999999999999887543333 3466777765543 2233444555555443334566666665554421
Q ss_pred -CCcEEEEEeCCCC
Q 000887 90 -KKKFLIVLDDVWS 102 (1237)
Q Consensus 90 -~~~~LlvlDdv~~ 102 (1237)
+..=+|++|-+-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3457888898844
No 249
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.99 E-value=0.094 Score=66.54 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-CC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF-KK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 91 (1237)
...+.+.|+.|+|||++|+.++...... -...+.++++.-.... .....++.+.. ....++. ..+.+.++ ..
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-~~~~i~~d~s~~~~~~----~~~~l~g~~~g-~~g~~~~-g~l~~~v~~~p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDD-EDAMVRIDMSEYMEKH----SVARLIGAPPG-YVGYEEG-GQLTEAVRRKP 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhhcccc----hHHHhcCCCCC-ccCcccc-cHHHHHHHcCC
Confidence 3578899999999999999988743322 2234555554332211 11122222211 1111111 12222222 34
Q ss_pred cEEEEEeCCCCCChhhHHHhhccccCC-----------CCCcEEEEEeCc
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVTTRS 130 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~~~~-----------~~~~~iliTtR~ 130 (1237)
..+|+||++...+.+.+..+...+-.+ ..++-||+||..
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 468999999776666666555544322 134447777764
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.021 Score=63.39 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-++++++|+.|+||||++.+++.... +.....+..++..... ...+-++..++.++.+.....+..+....+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46999999999999999999987543 2223446666644332 23344445555565544333333444444443 344
Q ss_pred CcEEEEEeCCCC
Q 000887 91 KKFLIVLDDVWS 102 (1237)
Q Consensus 91 ~~~LlvlDdv~~ 102 (1237)
+ -+|++|.+-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 5566899843
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.051 Score=53.88 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc--c--cc---CCC--CeEEEEEcCCcCHHHHHHHHHHHhhccCC-------CccCH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK--L--TE---AFE--PKAWVCVSDDFDVLRISKAILDSIKRSSC-------KLEDL 77 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~--~--~~---~f~--~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~ 77 (1237)
.+++|.|+.|+|||||.+.+..+. + .. .|. .+.|+. + .+.+..++.... .....
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 489999999999999999886321 1 00 010 122321 1 345555553321 11122
Q ss_pred HHHHHHHHHHhcCC--cEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchhHHHhhcCCCeEeC
Q 000887 78 NSVQLELKETVFKK--KFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVALTMGSGKNYEL 145 (1237)
Q Consensus 78 ~~~~~~l~~~l~~~--~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~~~~~~~~~~~~l 145 (1237)
+...-.+.+.+-.+ +=++++|+-... +......+...+.. ...|..||++|.+..... . .+.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 33333455555566 788889997442 11222222222222 124677999998887653 2 3344444
No 252
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.028 Score=58.56 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cc--cCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LT--EAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~--~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
|+|.++|++|.|||+|++++++.. ++ ..|....-+-+... .++..... . ...-+....+.+.+...+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFs----E--SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFS----E--SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHh----h--hhhHHHHHHHHHHHHHhC
Confidence 789999999999999999999976 32 33444444433222 12211111 1 223445555666666666
Q ss_pred Cc--EEEEEeCCC
Q 000887 91 KK--FLIVLDDVW 101 (1237)
Q Consensus 91 ~~--~LlvlDdv~ 101 (1237)
+. +.+.+|.|.
T Consensus 248 ~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 248 RGNLVFVLIDEVE 260 (423)
T ss_pred CCcEEEEEeHHHH
Confidence 54 344568884
No 253
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.046 Score=62.65 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-++++++|++|+||||++..++.... ......+..++...... ...-+...++.++.+.....+.++....+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 36999999999999999999877543 33334567777654322 11223333444444433334455555555543 2
Q ss_pred CcEEEEEeCCC
Q 000887 91 KKFLIVLDDVW 101 (1237)
Q Consensus 91 ~~~LlvlDdv~ 101 (1237)
..=+||+|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 45778889763
No 254
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.93 E-value=0.029 Score=59.38 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccC--------------------
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSS-------------------- 71 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-------------------- 71 (1237)
.-.++.|.|.+|+|||++|.+++....++ -..++|++.... ...+.+++ .+++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 34789999999999999999986643333 345788887644 33444432 2222110
Q ss_pred CCccCHHHHHHHHHHHhcC-CcEEEEEeCCC
Q 000887 72 CKLEDLNSVQLELKETVFK-KKFLIVLDDVW 101 (1237)
Q Consensus 72 ~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 101 (1237)
......++....+.+.... +.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 56689999984
No 255
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.92 E-value=0.015 Score=57.13 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccC--CCc-cCHHHHHHHHHHHhcCC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSS--CKL-EDLNSVQLELKETVFKK 91 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~--~~~-~~~~~~~~~l~~~l~~~ 91 (1237)
++.|.|.+|+|||++|.+++.. ....++|+.-....+.+ +.+.|.+--.... ... ....++...+.+. . +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 3679999999999999998753 22356677555554432 3333333221111 111 2222333333221 2 3
Q ss_pred cEEEEEeCC
Q 000887 92 KFLIVLDDV 100 (1237)
Q Consensus 92 ~~LlvlDdv 100 (1237)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 447999997
No 256
>PRK09354 recA recombinase A; Provisional
Probab=95.89 E-value=0.018 Score=63.00 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhcc-----CCCccCHHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRS-----SCKLEDLNSVQLELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~ 87 (1237)
=+++-|+|++|+|||+||.+++....+ .-..++|++.....+.. .+..++.. ...+...++....+...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 468889999999999999998764333 33567899887766642 34444322 11344566666666655
Q ss_pred hcC-CcEEEEEeCCC
Q 000887 88 VFK-KKFLIVLDDVW 101 (1237)
Q Consensus 88 l~~-~~~LlvlDdv~ 101 (1237)
.+. ..-+||+|.|-
T Consensus 134 i~s~~~~lIVIDSva 148 (349)
T PRK09354 134 VRSGAVDLIVVDSVA 148 (349)
T ss_pred hhcCCCCEEEEeChh
Confidence 544 56799999983
No 257
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.85 E-value=0.052 Score=54.31 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhcc---CCCccCHHHHH-HHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRS---SCKLEDLNSVQ-LELKETVF 89 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l~ 89 (1237)
++.+.|++|+||||++..++....+..+ .++.++.+... ...+.+...+.+.+.+ .....++.+.. +.+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGK-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999998874433322 35556544322 2222333334443321 11223444333 23333334
Q ss_pred CCcEEEEEeCCC
Q 000887 90 KKKFLIVLDDVW 101 (1237)
Q Consensus 90 ~~~~LlvlDdv~ 101 (1237)
+..-++|+|-.-
T Consensus 81 ~~~d~viiDt~g 92 (173)
T cd03115 81 ENFDVVIVDTAG 92 (173)
T ss_pred CCCCEEEEECcc
Confidence 444466688763
No 258
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.057 Score=61.34 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=78.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
+|=|.+||++|+|||.||.+++... . +=++.++.. ++...+ .....+.+.+.+.+..+.-+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel-~-----vPf~~isAp--------eivSGv-----SGESEkkiRelF~~A~~~aP 283 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL-G-----VPFLSISAP--------EIVSGV-----SGESEKKIRELFDQAKSNAP 283 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc-C-----CceEeecch--------hhhccc-----CcccHHHHHHHHHHHhccCC
Confidence 3558899999999999999998853 1 223333222 111111 22333344444455556689
Q ss_pred EEEEEeCCCCCCh------h-----hHHHhhccc---cCC---CCCcEEEE-EeCchhHHHh---hc-CCCeEeCCCCCh
Q 000887 93 FLIVLDDVWSERY------D-----LWQALKSPF---MAG---APGSRIIV-TTRSMDVALT---MG-SGKNYELKLLSD 150 (1237)
Q Consensus 93 ~LlvlDdv~~~~~------~-----~~~~~~~~~---~~~---~~~~~ili-TtR~~~~~~~---~~-~~~~~~l~~l~~ 150 (1237)
+++++|+++.... . .+.++...+ ... +.+.-||= |+|-..+... .+ -+..|.+.--++
T Consensus 284 civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e 363 (802)
T KOG0733|consen 284 CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSE 363 (802)
T ss_pred eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCch
Confidence 9999999954211 0 011222111 111 22222222 3343222211 11 235688888888
Q ss_pred hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCC
Q 000887 151 DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGL 187 (1237)
Q Consensus 151 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 187 (1237)
++-.++++..+.+-.... +-. .++|++..-|.
T Consensus 364 ~aR~~IL~~~~~~lrl~g-~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 364 TAREEILRIICRGLRLSG-DFD----FKQLAKLTPGF 395 (802)
T ss_pred HHHHHHHHHHHhhCCCCC-CcC----HHHHHhcCCCc
Confidence 888888887774333322 222 35666666554
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.81 E-value=0.084 Score=52.21 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEE-------EcCCcCH--HHHHHHHHHHhhccCCCccCHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC-------VSDDFDV--LRISKAILDSIKRSSCKLEDLNSVQLEL 84 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~-------~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 84 (1237)
.+++|.|..|.|||||++.++... . ...+.+++. +.+.... ..+.+.+... ........+..+-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~-~-~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW-P-WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-C-CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 378999999999999999987742 1 112222211 1122111 1233332211 122333344455556
Q ss_pred HHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHH
Q 000887 85 KETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 85 ~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~ 134 (1237)
.+.+-.++=++++|+-... +......+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 6667778888999997432 112222222222222 35688888876654
No 260
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.80 E-value=0.036 Score=54.67 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=63.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC--cCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 91 (1237)
.+++|.|..|+|||||.+.++... ....+.+++.-..- .+..+. ....++... +....+...-.+.+.+-..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~-qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY-QLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE-ecCHHHHHHHHHHHHHhcC
Confidence 379999999999999999987632 23345555532111 111111 111111111 1233344444566666778
Q ss_pred cEEEEEeCCCCC-ChhhHHHhhccccCC-CCCcEEEEEeCchhHHHh
Q 000887 92 KFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 92 ~~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iliTtR~~~~~~~ 136 (1237)
+-++++|+-... +......+...+... ..+..||++|.+......
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999998542 112222333333221 236678899988765433
No 261
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.77 E-value=0.12 Score=64.81 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=78.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
++-|.++|++|+|||++|++++... ... ++.+... ++.... .......+...+...-...+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~-~~~-----fi~v~~~--------~l~~~~-----vGese~~i~~~f~~A~~~~p 547 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES-GAN-----FIAVRGP--------EILSKW-----VGESEKAIREIFRKARQAAP 547 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-CCC-----EEEEehH--------HHhhcc-----cCcHHHHHHHHHHHHHhcCC
Confidence 4558899999999999999998742 211 2222111 111111 11111122222233334568
Q ss_pred EEEEEeCCCCC------C--hh----hHHHhhccccC--CCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCChhhh
Q 000887 93 FLIVLDDVWSE------R--YD----LWQALKSPFMA--GAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLSDDDC 153 (1237)
Q Consensus 93 ~LlvlDdv~~~------~--~~----~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~~ea 153 (1237)
.+|++|+++.- . .. ....+...+.. ...+.-||.||..+..... + .-...+.++..+.++.
T Consensus 548 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 548 AIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR 627 (733)
T ss_pred EEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence 99999998431 0 00 11122222221 1234456666655433221 1 1235788999999999
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 154 WSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
.++|+.+..+.. ...+. ....+++.+.|.-
T Consensus 628 ~~i~~~~~~~~~-~~~~~----~l~~la~~t~g~s 657 (733)
T TIGR01243 628 KEIFKIHTRSMP-LAEDV----DLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHhcCCC-CCccC----CHHHHHHHcCCCC
Confidence 999987653221 11111 2457777777644
No 262
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.037 Score=62.35 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccC--------------------CCCeEEEEEcCCcC---HHHHHHHHHHHhhcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEA--------------------FEPKAWVCVSDDFD---VLRISKAILDSIKRS 70 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~--------------------f~~~~w~~~~~~~~---~~~~~~~i~~~l~~~ 70 (1237)
..+-++|++|+|||++|.++++...... ++.+..++.++... ..+..+++.......
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence 3489999999999999999988543221 24455555554443 223333333332221
Q ss_pred CCCccCHHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhhcC-CCeEeCCC
Q 000887 71 SCKLEDLNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTMGS-GKNYELKL 147 (1237)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~~~-~~~~~l~~ 147 (1237)
.. .++.-++|+|+++.-+.+...++...+-....++.++++|... .+...+.. ...+++.+
T Consensus 105 ~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 105 PL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 10 2567899999996655555555665555556677777777633 22222221 24566666
No 263
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.76 E-value=0.013 Score=57.69 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=43.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC---CccCHHHHHHHHHHHhcCC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC---KLEDLNSVQLELKETVFKK 91 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~ 91 (1237)
++.|.|.+|+|||++|..++.... ..++++.-... .-.+..+.+......... ..+...++...+..... +
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~-~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA-P 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-C
Confidence 689999999999999999876421 12444433332 233444555443332221 11222234444444333 2
Q ss_pred cEEEEEeCC
Q 000887 92 KFLIVLDDV 100 (1237)
Q Consensus 92 ~~LlvlDdv 100 (1237)
.-++++|.+
T Consensus 77 ~~~VlID~L 85 (170)
T PRK05800 77 GRCVLVDCL 85 (170)
T ss_pred CCEEEehhH
Confidence 337888987
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.76 E-value=0.2 Score=56.30 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
....+|+|.|.=|+|||++...+.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 667899999999999999999987754
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.75 E-value=0.08 Score=50.86 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.+++|.|..|.|||||++.++... ....+.+|++-.. .++.-. +....+...-.+.+.+..++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL--EPDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcCCC
Confidence 488999999999999999987632 2233444442100 000000 022223334445566667778
Q ss_pred EEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHHHh
Q 000887 94 LIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 94 LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~ 136 (1237)
++++|+-... +......+...+... +..|+++|.+......
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 9999998432 222223333333222 3468888887766543
No 266
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.74 E-value=0.084 Score=57.47 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILD 65 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~ 65 (1237)
.++.|.|.+|+|||+++.+++.......-..++|++.... ..++...+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC--HHHHHHHHHH
Confidence 5889999999999999999877544442345889887553 3444444433
No 267
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0017 Score=65.49 Aligned_cols=98 Identities=24% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccCCCccccCccc--ccccccccc
Q 000887 421 CLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEGASALRELPLG--MKELKCLRT 498 (1237)
Q Consensus 421 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ip~~--~~~L~~L~~ 498 (1237)
.+.+.+.|+..+|++.++ .-..+++.|++|.|+-| .|..+.. +..+++|++|+|+.| .+..+-+- +.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 466788999999999988 44779999999999998 8888866 899999999999999 66666432 778889999
Q ss_pred cceeeeccCC--C-----cCcccccchHhcc
Q 000887 499 LTNFIVGKDS--G-----CALRDLKNWKFLR 522 (1237)
Q Consensus 499 L~~~~~~~~~--~-----~~i~~l~~l~~L~ 522 (1237)
|++..+.... + ..++.|++|++|.
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9876554322 1 1255566666665
No 268
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.063 Score=60.28 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccc---cCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLT---EAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~---~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 86 (1237)
...++|.++|+.|+||||.+..+++.... ..-..+..++...... ...-++..+..++.+.......++....+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 34689999999999999999998875421 1223455666554322 2222445555565543344455555555554
Q ss_pred HhcCCcEEEEEeCCCC
Q 000887 87 TVFKKKFLIVLDDVWS 102 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv~~ 102 (1237)
. ++.-+||+|-+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4567889999854
No 269
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.01 Score=55.21 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCC-CeEEE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWV 48 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~-~~~w~ 48 (1237)
-.|+|+|++|+||||++..+++....+.|. +.+|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 468999999999999999998765555464 33444
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.68 E-value=0.1 Score=65.97 Aligned_cols=132 Identities=9% Similarity=0.036 Sum_probs=67.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCC-----CCe-EEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPK-AWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f-----~~~-~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
-+.++|.+|+|||++|..++.......- ... ++++++. +.. .. ....+.++....+.+.+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a-------g~-~~~g~~e~~lk~~~~~~ 266 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA-------GA-KYRGEFEERLKGVLNDL 266 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh-------cc-chhhhhHHHHHHHHHHH
Confidence 5679999999999999998875432211 122 2222211 110 00 01112223222222222
Q ss_pred --cCCcEEEEEeCCCCCC-------hhhHHHhhccccCCCCCcEEEEEeCchhHHHh-------hcCCCeEeCCCCChhh
Q 000887 89 --FKKKFLIVLDDVWSER-------YDLWQALKSPFMAGAPGSRIIVTTRSMDVALT-------MGSGKNYELKLLSDDD 152 (1237)
Q Consensus 89 --~~~~~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~~l~~~e 152 (1237)
.+++++|++|+++.-. ..+...+..+.... ..-++|-+|...+.... ......+.+..-+.++
T Consensus 267 ~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~ 345 (857)
T PRK10865 267 AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVED 345 (857)
T ss_pred HHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHH
Confidence 2468999999994321 01122333333222 23456656555443111 1122366777778899
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
+.++++...
T Consensus 346 ~~~iL~~l~ 354 (857)
T PRK10865 346 TIAILRGLK 354 (857)
T ss_pred HHHHHHHHh
Confidence 999887654
No 271
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.052 Score=57.47 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc-cCCCccCHHHHHHH---HHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR-SSCKLEDLNSVQLE---LKE 86 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~---l~~ 86 (1237)
+.-+++=|+|+.|+|||++|.+++... +..-..++|++.....+...+..-....+.. ...++.+.++.... +..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a-q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA-QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh-hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 344788999999999999999987643 3333478999998888876554333331211 11133444443333 333
Q ss_pred HhcCCcEEEEEeCC
Q 000887 87 TVFKKKFLIVLDDV 100 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv 100 (1237)
...++--|+|+|.+
T Consensus 137 ~~~~~i~LvVVDSv 150 (279)
T COG0468 137 SGAEKIDLLVVDSV 150 (279)
T ss_pred hccCCCCEEEEecC
Confidence 33334679999998
No 272
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.68 E-value=0.031 Score=70.14 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-Cc-cCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-KL-EDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-~~-~~~~~~~~~l~~~l~~ 90 (1237)
..++.++|++|+|||.+|++++...... ....+-++++...+ ...+..-++.+.. .. .....+...++ +.
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~-~~~~~~~dmse~~~----~~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~ 667 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGG-EQNLITINMSEFQE----AHTVSRLKGSPPGYVGYGEGGVLTEAVR---RK 667 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCC-CcceEEEeHHHhhh----hhhhccccCCCCCcccccccchHHHHHH---hC
Confidence 4578999999999999999988753321 22233333222111 1122222232211 11 11112222332 24
Q ss_pred CcEEEEEeCCCCCChhhHHHhhccccCCC-----------CCcEEEEEeCc
Q 000887 91 KKFLIVLDDVWSERYDLWQALKSPFMAGA-----------PGSRIIVTTRS 130 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~~~~~~~~~~~~~~~-----------~~~~iliTtR~ 130 (1237)
...+|+||+++..+.+.+..+...+..+. .++-||+||.-
T Consensus 668 p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 56899999997666555555544443321 44556677653
No 273
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0056 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.728 Sum_probs=7.6
Q ss_pred CCeEEccCCCccccchhh
Q 000887 425 LRYLNFSRSEIQCLPDAI 442 (1237)
Q Consensus 425 Lr~L~L~~~~i~~lp~~i 442 (1237)
|++|||++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444433
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.047 Score=60.94 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=44.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
..++++++|++|+||||+|..++... ....+ .+..++...... ....+...+..++.+.....+.......+. +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 45789999999999999999998643 23222 344554433222 122233333444433222222222222222 2
Q ss_pred CCcEEEEEeCC
Q 000887 90 KKKFLIVLDDV 100 (1237)
Q Consensus 90 ~~~~LlvlDdv 100 (1237)
+..=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 33455888954
No 275
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.1 Score=50.40 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=41.9
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchhHHHhhc
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVALTMG 138 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~~~~~~ 138 (1237)
+....++..-.+.+.+-+++-+++=|.=... +.+-...+...+.. ...|+.||++|-+..+...+.
T Consensus 137 ~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3455666667777888889999999875321 11111222222222 356899999999998887664
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=95.63 E-value=0.067 Score=60.97 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCH-HHHHHHHHHHhhccCC---CccCHHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDV-LRISKAILDSIKRSSC---KLEDLNSVQLELKE 86 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~-~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 86 (1237)
..+.+|.++|++|+||||+|..++....+..-..+..+++...... .+-++..+.+.+.+.. ...++.+......+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 4578999999999999999999887543331234556655433221 1223334455443211 22344454443333
Q ss_pred HhcCC-cEEEEEeCCC
Q 000887 87 TVFKK-KFLIVLDDVW 101 (1237)
Q Consensus 87 ~l~~~-~~LlvlDdv~ 101 (1237)
..+.+ .-++|+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 33333 3377777764
No 277
>PRK08233 hypothetical protein; Provisional
Probab=95.63 E-value=0.03 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
..+|+|.|.+|+||||+|..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998743
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.62 E-value=0.093 Score=51.94 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEc---C----------------Cc--------------------
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS---D----------------DF-------------------- 54 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~---~----------------~~-------------------- 54 (1237)
.+|+|+|++|+|||||.+-+.. . ...-.+.+|++-. . .+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~-L-E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG-L-EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-C-cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 4899999999999999998654 2 2222234454321 0 00
Q ss_pred -----CHHHHHHHHHHHhhccC------CCccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCC
Q 000887 55 -----DVLRISKAILDSIKRSS------CKLEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPG 121 (1237)
Q Consensus 55 -----~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~ 121 (1237)
...+...+++..++... .+.....+-+-.|.+.|.-++=++.||...+. +.+-..++...... ...|
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 11223333333333221 13344555566778888888999999998653 22222333222222 2346
Q ss_pred cEEEEEeCchhHHHhhc
Q 000887 122 SRIIVTTRSMDVALTMG 138 (1237)
Q Consensus 122 ~~iliTtR~~~~~~~~~ 138 (1237)
-..++.|-+..++....
T Consensus 187 mTMivVTHEM~FAr~Va 203 (240)
T COG1126 187 MTMIIVTHEMGFAREVA 203 (240)
T ss_pred CeEEEEechhHHHHHhh
Confidence 67888888888776653
No 279
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.60 E-value=0.045 Score=55.86 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCC---CeEEEEEcCCcCHHHHHHHHHHHhh----ccCCCccCHHHHHHHHHHH
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFE---PKAWVCVSDDFDVLRISKAILDSIK----RSSCKLEDLNSVQLELKET 87 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~---~~~w~~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~l~~~ 87 (1237)
||+|.|++|+||||+|++++....+.... .+..+.............. ..... .......+.+.....+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHH
Confidence 79999999999999999988754444444 2334433332222121111 11111 1112345677777777766
Q ss_pred hcCCcEEE
Q 000887 88 VFKKKFLI 95 (1237)
Q Consensus 88 l~~~~~Ll 95 (1237)
.+++.+-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 55555444
No 280
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.56 E-value=0.069 Score=56.31 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCC-eEEEEEcCCc-CHHHHHHHHHHHhhcc------CCCccCHH-H-----
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSDDF-DVLRISKAILDSIKRS------SCKLEDLN-S----- 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-~~w~~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~-~----- 79 (1237)
..++|.|.+|+|||+||.+++... +..|.. ++++-++... .+.++.+++...-... ......+. +
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i-~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHH-HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 467999999999999999998753 334443 4455555443 4445555554321111 00111111 1
Q ss_pred HHHHHHHHh--c-CCcEEEEEeCC
Q 000887 80 VQLELKETV--F-KKKFLIVLDDV 100 (1237)
Q Consensus 80 ~~~~l~~~l--~-~~~~LlvlDdv 100 (1237)
..-.+.+++ + ++++|+++||+
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112244555 2 78999999999
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.17 Score=57.68 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=73.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
+.=|.++|++|+|||-||++|++. -+.. |+.+-.. .++... .|. ....++..+.+.-..-+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE-ag~N-----FisVKGP----ELlNkY---VGE------SErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE-AGAN-----FISVKGP----ELLNKY---VGE------SERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh-ccCc-----eEeecCH----HHHHHH---hhh------HHHHHHHHHHHhhcCCC
Confidence 345789999999999999999984 2222 4555333 122221 111 11222222333333479
Q ss_pred EEEEEeCCCCC------C-hhh----HHHhhccccC--CCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCChhhhH
Q 000887 93 FLIVLDDVWSE------R-YDL----WQALKSPFMA--GAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLSDDDCW 154 (1237)
Q Consensus 93 ~LlvlDdv~~~------~-~~~----~~~~~~~~~~--~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~~ea~ 154 (1237)
++|.||.++.- . ... +.++..-+.. ...|..||-.|-.+++... + .-+..+-++.-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999999531 0 011 1122222221 2356667766655544321 1 12356778888889999
Q ss_pred HHHHHHhc
Q 000887 155 SVFVAHAF 162 (1237)
Q Consensus 155 ~l~~~~~~ 162 (1237)
++++....
T Consensus 686 ~ILK~~tk 693 (802)
T KOG0733|consen 686 AILKTITK 693 (802)
T ss_pred HHHHHHhc
Confidence 99998874
No 282
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.55 E-value=0.075 Score=55.04 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcC-----CcCHHHHHHHHHHHhhccCC-------CccCHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSD-----DFDVLRISKAILDSIKRSSC-------KLEDLNSVQ 81 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~ 81 (1237)
.+++|+|-+|+||||+++.+.. ..+-.. +.+++.-.+ .....+...+++...+.... +......-+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~-L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG-LEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc-CcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4789999999999999999876 333333 334332111 11233344555555554321 223333334
Q ss_pred HHHHHHhcCCcEEEEEeCCCCCChhhH-HHhhcccc--CCCCCcEEEEEeCchhHHHhhc
Q 000887 82 LELKETVFKKKFLIVLDDVWSERYDLW-QALKSPFM--AGAPGSRIIVTTRSMDVALTMG 138 (1237)
Q Consensus 82 ~~l~~~l~~~~~LlvlDdv~~~~~~~~-~~~~~~~~--~~~~~~~iliTtR~~~~~~~~~ 138 (1237)
-.+.+.+.-++-++|.|...+.-+... +++...+. ....|...++.|-+-.+...+.
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 456777788999999999744321111 11222121 1234677888888877776554
No 283
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.50 E-value=0.025 Score=60.34 Aligned_cols=34 Identities=26% Similarity=0.205 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWV 48 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~ 48 (1237)
+.|.|+|.+|+||||+|+++......... .+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~-~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGK-EVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT---EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCC-EEEEE
Confidence 57999999999999999998875433222 24455
No 284
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.49 E-value=0.069 Score=53.37 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcC--CcCHHHHHHHHHHHhhccCCC------------ccCHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSD--DFDVLRISKAILDSIKRSSCK------------LEDLNS 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~--~~~~~~~~~~i~~~l~~~~~~------------~~~~~~ 79 (1237)
.+++|.|..|+|||||++.++... ....+.++++-.. ....... ...++.-... ....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL--RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHHH
Confidence 379999999999999999987632 2223444432111 0111111 1111110000 122233
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchhHH
Q 000887 80 VQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 80 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~~ 134 (1237)
..-.+.+.+-.++=++++|+.... +......+...+.. ...|..||++|.+....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 344455666667789999998542 11222222222222 12366788888887665
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.49 E-value=0.067 Score=57.40 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCH-HHHHHHHHHHhhccC---CCccCHHH-HHHHH
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDV-LRISKAILDSIKRSS---CKLEDLNS-VQLEL 84 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~-~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 84 (1237)
....++++++|++|+||||++..++....+.. ..+.+++....... ..-+...+...+.+. ....++.. ....+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 35578999999999999999999887543332 34666765432221 122233444444221 11223322 22334
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 000887 85 KETVFKKKFLIVLDDVWS 102 (1237)
Q Consensus 85 ~~~l~~~~~LlvlDdv~~ 102 (1237)
.....+..=++|+|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444344556788898843
No 286
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.44 E-value=0.046 Score=55.63 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
++.|.|.+|+|||++|.+++....+. -..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 36899999999999999987654333 245778876543
No 287
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.13 Score=51.49 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=39.8
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchhHHHhhcCC
Q 000887 75 EDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVALTMGSG 140 (1237)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~~~~~~~~ 140 (1237)
...+..+..+.+.+--++-+.|+|.-++- +.+.+..+...... ..+++.+||.|-.+.+......+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 34455666677777778899999998652 23333333322221 23466677777777777655444
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.43 E-value=0.096 Score=59.72 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=51.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcC-HHHHHHHHHHHhhccCC---CccCHHHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFD-VLRISKAILDSIKRSSC---KLEDLNSVQLELK 85 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 85 (1237)
..+.++.++|.+|+||||+|..++.... +..+ .+..+++..... ..+-+...+.+.+.+.. ...++.+......
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3478999999999999999999887533 2333 355665543322 22233344454443321 2234444443333
Q ss_pred HHhcCCc-EEEEEeCCCC
Q 000887 86 ETVFKKK-FLIVLDDVWS 102 (1237)
Q Consensus 86 ~~l~~~~-~LlvlDdv~~ 102 (1237)
+....+. =++|+|-.-.
T Consensus 176 ~~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHHhcCCCEEEEeCCCc
Confidence 3333333 4888888743
No 289
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.42 E-value=0.074 Score=56.61 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cccC----CCCeEEEEEcCCcCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LTEA----FEPKAWVCVSDDFDVLRISKAILDSI 67 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l 67 (1237)
.+.=|+|.+|+|||+||.+++-.. .... -..++|++-...++...+. +|+++.
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 477899999999999999876533 2221 2347899988888877665 455544
No 290
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.098 Score=52.91 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEeCCCCCCh-hhHHHhhccccC--CCCCcEEEEEeCchhHHHhhc
Q 000887 75 EDLNSVQLELKETVFKKKFLIVLDDVWSERY-DLWQALKSPFMA--GAPGSRIIVTTRSMDVALTMG 138 (1237)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-~~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~~~ 138 (1237)
...+..+-.+.+.+--++=+||+|..-+.-+ ..-+.+...+.. ...+-.+|+.|-+-.+...+.
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 3334444456777778899999999844211 111122222221 245667888888877766553
No 291
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.39 E-value=0.015 Score=57.30 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFD 55 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~ 55 (1237)
...+.+.|+.|+|||.+|++++...........+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 4678999999999999999988743213444566666655444
No 292
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.39 E-value=0.53 Score=52.48 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=71.9
Q ss_pred cEEEEEeCCCCCC---hhhHHHh---hccccCCCCCcEEEEEeCchhHHHhh----c--CCCeEeCCCCChhhhHHHHHH
Q 000887 92 KFLIVLDDVWSER---YDLWQAL---KSPFMAGAPGSRIIVTTRSMDVALTM----G--SGKNYELKLLSDDDCWSVFVA 159 (1237)
Q Consensus 92 ~~LlvlDdv~~~~---~~~~~~~---~~~~~~~~~~~~iliTtR~~~~~~~~----~--~~~~~~l~~l~~~ea~~l~~~ 159 (1237)
+=+||+||.-... ...++.+ ...+. ..+-.+||++|-+......+ + ..+.+.|.-.+++.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 5689999984311 1111111 11111 23456799999876554322 2 235788999999999999988
Q ss_pred HhcCCCCCC------------C----CCChHHHHHHHHHHccCCchHHHHHHhHhhcCCCH
Q 000887 160 HAFEGRDAG------------T----HGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGV 204 (1237)
Q Consensus 160 ~~~~~~~~~------------~----~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~ 204 (1237)
+........ . .....+.....++.+||=-.-|..++++++...++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 875431110 0 01345566788899999999999999999987653
No 293
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.36 E-value=0.089 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987743
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.029 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
.|.|.|++|+||||+|+.+++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998863
No 295
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.34 E-value=0.14 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998764
No 296
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.31 E-value=0.55 Score=54.90 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=97.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhccc----c---cCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKL----T---EAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLEL 84 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~----~---~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 84 (1237)
.-+.+-|.|.+|+|||+.+.+|..... + ..|+ .+.++...-.+..+++..|..++.... .........+
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~---~~~~~al~~L 496 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGER---VTWDAALEAL 496 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCc---ccHHHHHHHH
Confidence 335999999999999999999987432 1 2233 345555555678899999988886542 2333344444
Q ss_pred HHHhc-----CCcEEEEEeCCCCCChhhHHHhhccc--cCCCCCcEEEEEeC--chhHHHhh-c-------CCCeEeCCC
Q 000887 85 KETVF-----KKKFLIVLDDVWSERYDLWQALKSPF--MAGAPGSRIIVTTR--SMDVALTM-G-------SGKNYELKL 147 (1237)
Q Consensus 85 ~~~l~-----~~~~LlvlDdv~~~~~~~~~~~~~~~--~~~~~~~~iliTtR--~~~~~~~~-~-------~~~~~~l~~ 147 (1237)
..+.. .+.++|++|+++.-- ..-.++...+ ++..+++|++|-+= ..+...++ . ....+..++
T Consensus 497 ~~~f~~~k~~~~~~VvLiDElD~Lv-tr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767)
T KOG1514|consen 497 NFRFTVPKPKRSTTVVLIDELDILV-TRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767)
T ss_pred HHhhccCCCCCCCEEEEeccHHHHh-cccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence 44443 357899999983210 0001222222 23457787665432 11111111 0 114667777
Q ss_pred CChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHH
Q 000887 148 LSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARA 193 (1237)
Q Consensus 148 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 193 (1237)
.+.++-.++...+..+. ........+-+|+.++...|-.-.|+.+
T Consensus 576 Yth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 576 YTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred CCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 78777777777665433 2222223333444444444444444433
No 297
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.28 E-value=0.041 Score=59.57 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..++.++|+|++|+|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999885
No 298
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.24 E-value=0.0085 Score=57.16 Aligned_cols=36 Identities=31% Similarity=0.194 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEE
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC 49 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~ 49 (1237)
..+|.|+|.+|+||||||+++.+..... -..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~-g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR-GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEec
Confidence 3689999999999999999988754433 34566665
No 299
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.24 Score=51.40 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEeCCCCC----ChhhHHHhhccccCCCCCcEEEEEeCchhHHHh
Q 000887 75 EDLNSVQLELKETVFKKKFLIVLDDVWSE----RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~ 136 (1237)
...+..+..+.+.|...+=|+++|.-... .....-++...+.. .|+.||++|-|-.....
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 34445555677888889999999985331 11222223333333 28899999998766543
No 300
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.34 Score=48.50 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=72.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
.+++=|.++|++|.|||-||++||++ ..+.|+.++... -+++-| +. ...-+.++.-+-+ ..
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh------t~c~firvsgse---lvqk~i----ge---gsrmvrelfvmar---eh 239 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGSE---LVQKYI----GE---GSRMVRELFVMAR---EH 239 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechHH---HHHHHh----hh---hHHHHHHHHHHHH---hc
Confidence 45667889999999999999999984 234456665431 112111 11 1111122221212 23
Q ss_pred CcEEEEEeCCCCCCh-----------hhHH---HhhccccC--CCCCcEEEEEeCchhHHHh-----hcCCCeEeCCCCC
Q 000887 91 KKFLIVLDDVWSERY-----------DLWQ---ALKSPFMA--GAPGSRIIVTTRSMDVALT-----MGSGKNYELKLLS 149 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~-----------~~~~---~~~~~~~~--~~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~l~ 149 (1237)
-+.+|.+|.+++... +.-. ++...+.. ..++-|||..|..-++... ...+..++.++-+
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 588899998854211 1111 11112221 2456788877764444321 1233568888888
Q ss_pred hhhhHHHHHHHh
Q 000887 150 DDDCWSVFVAHA 161 (1237)
Q Consensus 150 ~~ea~~l~~~~~ 161 (1237)
++...++++-+.
T Consensus 320 e~ar~~ilkihs 331 (404)
T KOG0728|consen 320 EEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHhh
Confidence 887788887665
No 301
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.04 Score=51.48 Aligned_cols=44 Identities=30% Similarity=0.313 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRS 70 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 70 (1237)
+|+|.|++|+||||+|+.++++.--. .+ +.-.+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999998853110 11 2335778888887754
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.12 Score=51.41 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.+++|.|+.|+|||||++.++.-. ....+.+++.-.. +..+ .+.......+...-.+.+.+..++-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~---i~~~---------~q~~~LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL--IPNGDNDEWDGIT---PVYK---------PQYIDLSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC--CCCCcEEEECCEE---EEEE---------cccCCCCHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999987632 1223333331100 0000 0000022233344455566667888
Q ss_pred EEEEeCCCCCC-hhhHHHhhccccCC--CCCcEEEEEeCchhHHHhhcCCCeEeCC
Q 000887 94 LIVLDDVWSER-YDLWQALKSPFMAG--APGSRIIVTTRSMDVALTMGSGKNYELK 146 (1237)
Q Consensus 94 LlvlDdv~~~~-~~~~~~~~~~~~~~--~~~~~iliTtR~~~~~~~~~~~~~~~l~ 146 (1237)
++++|+-...- ......+...+... ..+..||++|.+........ ...+.++
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~ 146 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE 146 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence 99999974321 11122222222211 12356888888876654432 2344444
No 303
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.16 E-value=0.079 Score=61.04 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=91.6
Q ss_pred EEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCcCHHHHHHH-HHHHhhccCCCccCHHHHHHHHHHHh----cC
Q 000887 17 PLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKA-ILDSIKRSSCKLEDLNSVQLELKETV----FK 90 (1237)
Q Consensus 17 ~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~l----~~ 90 (1237)
...|+=|+||||+|+-++... -...-+ .-.++....-..+... ..+-+.........+++.+..+.+.. ++
T Consensus 42 lfsG~RGvGKTt~Ari~AkalNC~~~~~---~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ 118 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKALNCENGPT---AEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEG 118 (515)
T ss_pred hhcCCCCcCchhHHHHHHHHhcCCCCCC---CCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccc
Confidence 468999999999999987744 111100 0011111111111111 11111111112233444443333222 24
Q ss_pred CcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCch-hHHHhh-cCCCeEeCCCCChhhhHHHHHHHhcCCCCCC
Q 000887 91 KKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVALTM-GSGKNYELKLLSDDDCWSVFVAHAFEGRDAG 168 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~ 168 (1237)
+-=+.|+|.|.--....+.++...+-.-+.+.+.|..|++. .+.... .....+.+..++.++-...+...+.......
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~ 198 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI 198 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc
Confidence 55688999995444455666666665555666655555544 444332 2336899999999999999988875443332
Q ss_pred CCCChHHHHHHHHHHccCCch
Q 000887 169 THGNFESTRQRVVEKCKGLPL 189 (1237)
Q Consensus 169 ~~~~~~~~~~~i~~~~~g~PL 189 (1237)
.+++..-|++..+|...
T Consensus 199 ----e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 199 ----EEDALSLIARAAEGSLR 215 (515)
T ss_pred ----CHHHHHHHHHHcCCChh
Confidence 36677788888888654
No 304
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.13 E-value=0.15 Score=64.12 Aligned_cols=137 Identities=20% Similarity=0.175 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+++.++|++|+|||++|+.++... ...| +-+.++...+..++.. . ...............+...- ..+-
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l-~~~~---~~i~~~~~~~~~~i~g----~--~~~~~g~~~g~i~~~l~~~~-~~~~ 416 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKAL-NRKF---VRFSLGGVRDEAEIRG----H--RRTYVGAMPGRIIQGLKKAK-TKNP 416 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-cCCe---EEEeCCCcccHHHHcC----C--CCceeCCCCchHHHHHHHhC-cCCC
Confidence 579999999999999999998753 2222 2233333223222211 0 01011111223333344332 2334
Q ss_pred EEEEeCCCCCCh----hhHHHhhcccc--------CC-------CCCcEEEEEeCchhH-HHhh-cCCCeEeCCCCChhh
Q 000887 94 LIVLDDVWSERY----DLWQALKSPFM--------AG-------APGSRIIVTTRSMDV-ALTM-GSGKNYELKLLSDDD 152 (1237)
Q Consensus 94 LlvlDdv~~~~~----~~~~~~~~~~~--------~~-------~~~~~iliTtR~~~~-~~~~-~~~~~~~l~~l~~~e 152 (1237)
+|++|+++.... +....+...+- .. ..+.-+|.||..... ...+ .....+++.+++.+|
T Consensus 417 villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e 496 (775)
T TIGR00763 417 LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEE 496 (775)
T ss_pred EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHH
Confidence 789999954311 11122222111 10 123334444443221 1111 222578899999988
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
-.+++....
T Consensus 497 ~~~I~~~~l 505 (775)
T TIGR00763 497 KLEIAKKYL 505 (775)
T ss_pred HHHHHHHHH
Confidence 888876654
No 305
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.11 E-value=0.033 Score=60.19 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 88 (1237)
+++-|+|+.|+||||||..+.....+ .-..++|++.....+.. .+.+++.... .+...++..+...+.+
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~~q~-~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAEAQK-QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHhhhc-ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 68999999999999999998774333 33457799887776543 3344443221 3455677766666666
Q ss_pred cCC-cEEEEEeCC
Q 000887 89 FKK-KFLIVLDDV 100 (1237)
Q Consensus 89 ~~~-~~LlvlDdv 100 (1237)
+.. --++|+|.|
T Consensus 128 rsg~~~lVVvDSv 140 (322)
T PF00154_consen 128 RSGAVDLVVVDSV 140 (322)
T ss_dssp HTTSESEEEEE-C
T ss_pred hcccccEEEEecC
Confidence 653 458899998
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.09 E-value=0.036 Score=56.45 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=53.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHH-h----
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKET-V---- 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l---- 88 (1237)
++++|.|++|+|||++++.+........+ .++++ .........+.+. .+... ............. .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~-~v~~~-apT~~Aa~~L~~~----~~~~a---~Ti~~~l~~~~~~~~~~~~ 89 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGK-RVIGL-APTNKAAKELREK----TGIEA---QTIHSFLYRIPNGDDEGRP 89 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEE-ESSHHHHHHHHHH----HTS-E---EEHHHHTTEECCEECCSSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEEE-CCcHHHHHHHHHh----hCcch---hhHHHHHhcCCcccccccc
Confidence 58899999999999999997764333332 23333 3333222233222 22110 0000000000000 0
Q ss_pred -cCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHH
Q 000887 89 -FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 89 -~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~ 134 (1237)
..+.-+||+|++.-.+...+..+...... .++|+|+.--..+..
T Consensus 90 ~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 90 ELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLP 134 (196)
T ss_dssp C-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHH
T ss_pred cCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhc
Confidence 12345999999966555555555554433 478888877655443
No 307
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.07 E-value=0.085 Score=66.73 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCC-c
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKK-K 92 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~ 92 (1237)
..+.++|+.|+|||++|+.+++...... ...+.++.+.-.+.. .+...++.+.. -...++. ..+.+.++.+ .
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~-~~~~~~d~s~~~~~~----~~~~l~g~~~g-yvg~~~~-~~l~~~~~~~p~ 612 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSE-DAMIRLDMSEYMEKH----TVSKLIGSPPG-YVGYNEG-GQLTEAVRKKPY 612 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCc-cceEEEEchhccccc----cHHHhcCCCCc-ccCcCcc-chHHHHHHhCCC
Confidence 4677899999999999999987543221 234455544322211 11122222211 1111111 1233334444 4
Q ss_pred EEEEEeCCCCCChhhHHHhhccccCC-----------CCCcEEEEEeCc
Q 000887 93 FLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVTTRS 130 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~~~~~~~~~~~~~-----------~~~~~iliTtR~ 130 (1237)
.+++||+++..+.+.+..+...+-.+ ..++-+|+||..
T Consensus 613 ~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 613 TVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred eEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 79999999776666666555544332 234556666654
No 308
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.012 Score=35.04 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.7
Q ss_pred CccEEEccccccccccccccCC
Q 000887 401 KLRVLSLGSYCITEVPISIGCL 422 (1237)
Q Consensus 401 ~Lr~L~L~~~~i~~lp~~~~~l 422 (1237)
+|++|+|++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 309
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.073 Score=53.18 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc--cCC---C---------ccCHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR--SSC---K---------LEDLNS 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~--~~~---~---------~~~~~~ 79 (1237)
.+++|.|..|.|||||++.++... ....+.++++-....+.. ......++. +.. . ....+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL--KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 489999999999999999987632 123344444211100000 111111110 000 0 122233
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCC-CCCcEEEEEeCchhHHHh
Q 000887 80 VQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 80 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iliTtR~~~~~~~ 136 (1237)
..-.+...+..++-++++|+-... +......+...+... ..|..||++|.+......
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 344566677778899999998442 112222233322221 236779999988776543
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.01 E-value=0.093 Score=51.87 Aligned_cols=122 Identities=14% Similarity=0.027 Sum_probs=66.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC---cCHHHHHHHHH--H--Hhhcc-CCCccCHH-----
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD---FDVLRISKAIL--D--SIKRS-SCKLEDLN----- 78 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~--~--~l~~~-~~~~~~~~----- 78 (1237)
....|.|+|..|-||||.|..++.+.....+. |..+-+-.+ ......++.+- . +.+.. .....+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 34789999999999999999987755555554 333333222 22222222210 0 00111 00111111
Q ss_pred --HHHHHHHHHhcC-CcEEEEEeCCCC---CChhhHHHhhccccCCCCCcEEEEEeCchhHH
Q 000887 79 --SVQLELKETVFK-KKFLIVLDDVWS---ERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 79 --~~~~~l~~~l~~-~~~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~ 134 (1237)
+.....++.+.. +-=+||||.+-. -.....+++...+...+.+..||+|-|+....
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 122233344433 456999999822 12233455666666677788999999986443
No 311
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.99 E-value=0.092 Score=57.78 Aligned_cols=88 Identities=18% Similarity=0.068 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCcCHHH-HHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDFDVLR-ISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-++|+++|+.||||||....+++... ...-..|..++.+.-.-... -++..++-++.+-....++.+....+... ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 58999999999999988777777553 34445677887766554333 33445555666655556666666666544 33
Q ss_pred CcEEEEEeCCCC
Q 000887 91 KKFLIVLDDVWS 102 (1237)
Q Consensus 91 ~~~LlvlDdv~~ 102 (1237)
. =+|.+|=+..
T Consensus 282 ~-d~ILVDTaGr 292 (407)
T COG1419 282 C-DVILVDTAGR 292 (407)
T ss_pred C-CEEEEeCCCC
Confidence 3 4555677643
No 312
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.96 E-value=0.04 Score=56.89 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999864
No 313
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.96 E-value=0.25 Score=50.44 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=40.9
Q ss_pred ccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC--CCCCcEEEEEeCchhHHHhh
Q 000887 74 LEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA--GAPGSRIIVTTRSMDVALTM 137 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~~ 137 (1237)
....++.+-++.+.+-..+-+|+-|+=... +...-..+...+.. ...|..||+.|-++.++..+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 344566666788888889999999985321 11222233333332 24477899999999988643
No 314
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.95 E-value=0.25 Score=52.30 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=79.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCC-eEEEEEcCCcC-----HHHHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSDDFD-----VLRISKAILDSIKRSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-~~w~~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 86 (1237)
..-|.|+|+.|.|||.|......+ .+.|.- .+-+......- +..+.+++..++........+..+....+.+
T Consensus 49 snsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLE 126 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHH
Confidence 346889999999999998887665 222322 22333332221 2233333443433332233444454555555
Q ss_pred HhcC------CcEEEEEeCCCCCChhhHHHhhccc-----cCCCCCcEEEEEeCchhHH---Hh----hcCCCeEeCCCC
Q 000887 87 TVFK------KKFLIVLDDVWSERYDLWQALKSPF-----MAGAPGSRIIVTTRSMDVA---LT----MGSGKNYELKLL 148 (1237)
Q Consensus 87 ~l~~------~~~LlvlDdv~~~~~~~~~~~~~~~-----~~~~~~~~iliTtR~~~~~---~~----~~~~~~~~l~~l 148 (1237)
.|+. .++++|+|.++--.......+.-.+ ....|=|-|-+|||-.-.. .+ +.-..++-++.+
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~ 206 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSL 206 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCC
Confidence 5542 4689999988432111111111111 1235667788999965332 12 222234556678
Q ss_pred ChhhhHHHHHHHh
Q 000887 149 SDDDCWSVFVAHA 161 (1237)
Q Consensus 149 ~~~ea~~l~~~~~ 161 (1237)
..++..++++...
T Consensus 207 ~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 207 PLGDYVDLYRKLL 219 (408)
T ss_pred ChHHHHHHHHHHh
Confidence 8888888888776
No 315
>PTZ00301 uridine kinase; Provisional
Probab=94.95 E-value=0.048 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..+|+|.|.+|+||||+|.++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988764
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.89 E-value=0.1 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+|+|.|.+|+||||+|+.++...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988743
No 317
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.86 E-value=0.053 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
-.+|+|.|++|+||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999988754
No 318
>PRK13695 putative NTPase; Provisional
Probab=94.86 E-value=0.034 Score=55.63 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
.|+|.|.+|+||||++..+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987643
No 319
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.85 E-value=0.019 Score=58.38 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=66.6
Q ss_pred cCCCCCccEEEcccc--ccc-cccccccCCCCCCeEEccCCCccccc--hhhcccCCccEEEcCccccCccCCh---h-h
Q 000887 396 LPQCKKLRVLSLGSY--CIT-EVPISIGCLKQLRYLNFSRSEIQCLP--DAICSLFNLEILILRNCWCLLKLPS---R-I 466 (1237)
Q Consensus 396 ~~~~~~Lr~L~L~~~--~i~-~lp~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~-i 466 (1237)
|..+++|+.|.++.| ++. .++-...++++|++|+|++|+|..+. .....+.+|..|++.+|... .+-. . +
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~-~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT-NLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc-ccccHHHHHH
Confidence 567889999999999 444 34443456699999999999988542 24778888999999999433 3321 1 4
Q ss_pred cccccccEEeccCCCccccCcccc
Q 000887 467 GNLVNLHYLNIEGASALRELPLGM 490 (1237)
Q Consensus 467 ~~L~~L~~L~l~~~~~l~~ip~~~ 490 (1237)
.-|++|.+||-... .-...|...
T Consensus 140 ~ll~~L~~LD~~dv-~~~Ea~~~~ 162 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV-DGEEAPEAD 162 (260)
T ss_pred HHhhhhcccccccc-CCccccccc
Confidence 67899999987766 445566544
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.84 E-value=0.054 Score=55.34 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=56.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.+|.|.|+.|+||||++..++... .....+.++.. .+.... ..... ..+-.......+.......++..++..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~-~~~~~~~i~t~-e~~~E~--~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI-NKNKTHHILTI-EDPIEF--VHESK-RSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-hhcCCcEEEEE-cCCccc--cccCc-cceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 479999999999999999877643 22233344332 222111 10000 00000101111223455567777777788
Q ss_pred EEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchh
Q 000887 94 LIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD 132 (1237)
Q Consensus 94 LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~ 132 (1237)
++++|++.+. +......... ..|..++.|+-...
T Consensus 77 ~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 77 VILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred EEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCc
Confidence 9999999543 3333222221 23455666665443
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.84 E-value=0.13 Score=54.43 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
-.++.|.|.+|+|||++|.+++.... ..-..++|++....
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEEH 60 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeCC
Confidence 47899999999999999999766433 23456888887553
No 322
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.091 Score=52.80 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc--cCC---C-----------ccCH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR--SSC---K-----------LEDL 77 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~--~~~---~-----------~~~~ 77 (1237)
.+++|.|..|+|||||++.++... ....+.+++.-........-.......++. +.. . ....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE--EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 489999999999999999987632 223344443211100000000011111110 000 0 1112
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCC--CCCcEEEEEeCchhHHHh
Q 000887 78 NSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG--APGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 78 ~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~--~~~~~iliTtR~~~~~~~ 136 (1237)
+...-.+...+..++=++|+|+-... +......+...+... ..+..||++|.+......
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33334456666678889999997432 122222233323221 225678888888766543
No 323
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.82 E-value=0.085 Score=59.65 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSD 52 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~ 52 (1237)
..+++|.++|+.|+||||+|..++....+..+ .++.++...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADT 138 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcc
Confidence 44789999999999999999998875433333 466665543
No 324
>PHA02244 ATPase-like protein
Probab=94.82 E-value=0.11 Score=56.80 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
-|.|+|++|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999998874
No 325
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.81 E-value=0.021 Score=53.87 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 000887 16 IPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~ 36 (1237)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 326
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.81 E-value=0.023 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+|+|.|.+|+||||+|+++.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 327
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.088 Score=60.48 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcC-HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFD-VLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-++|+|+|++|+||||++..++......+ ...+..++...... ....+......++.......+..+....+.+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c-
Confidence 47999999999999999999877543322 34466665543222 11222222333333222233444444444433 3
Q ss_pred CcEEEEEeCCC
Q 000887 91 KKFLIVLDDVW 101 (1237)
Q Consensus 91 ~~~LlvlDdv~ 101 (1237)
..=+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 35588888874
No 328
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.77 E-value=0.21 Score=62.61 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=77.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
.+-|.++|++|+|||++|+++++.. ... .+.++.. .+. ... ...........+.......+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~-~~~---~i~i~~~------~i~----~~~-----~g~~~~~l~~lf~~a~~~~p 272 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA-GAY---FISINGP------EIM----SKY-----YGESEERLREIFKEAEENAP 272 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh-CCe---EEEEecH------HHh----ccc-----ccHHHHHHHHHHHHHHhcCC
Confidence 3568899999999999999988743 111 1223211 111 000 00111222223333334567
Q ss_pred EEEEEeCCCCCC-----------hhhHHHhhccccCC-CCCcEEEE-EeCchhH-HHhhc----CCCeEeCCCCChhhhH
Q 000887 93 FLIVLDDVWSER-----------YDLWQALKSPFMAG-APGSRIIV-TTRSMDV-ALTMG----SGKNYELKLLSDDDCW 154 (1237)
Q Consensus 93 ~LlvlDdv~~~~-----------~~~~~~~~~~~~~~-~~~~~ili-TtR~~~~-~~~~~----~~~~~~l~~l~~~ea~ 154 (1237)
.+|++|+++... ......+...+... ..+..++| ||..... ...+. -...+.++..+.++..
T Consensus 273 ~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~ 352 (733)
T TIGR01243 273 SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARK 352 (733)
T ss_pred cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHH
Confidence 899999984310 00111222222211 22334444 4443321 11111 1246778888888888
Q ss_pred HHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchH
Q 000887 155 SVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
++++....... ... ......+++.+.|.--+
T Consensus 353 ~Il~~~~~~~~-l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 353 EILKVHTRNMP-LAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHhcCCC-Ccc----ccCHHHHHHhCCCCCHH
Confidence 88886542211 111 12256788888876543
No 329
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.29 Score=56.72 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
..++=|-++|++|+|||++|++++.. -+..| +.+... +++... .......+...+++.-+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne-~~~nF-----lsvkgp----EL~sk~---------vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE-AGMNF-----LSVKGP----ELFSKY---------VGESERAIREVFRKARQV 526 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh-hcCCe-----eeccCH----HHHHHh---------cCchHHHHHHHHHHHhhc
Confidence 34577899999999999999998874 23333 322211 111111 111112222222222233
Q ss_pred CcEEEEEeCCCCCCh-----------hhHHHhhccccCCCCC-cEEEEEeCchh--HHH-hhc---CCCeEeCCCCChhh
Q 000887 91 KKFLIVLDDVWSERY-----------DLWQALKSPFMAGAPG-SRIIVTTRSMD--VAL-TMG---SGKNYELKLLSDDD 152 (1237)
Q Consensus 91 ~~~LlvlDdv~~~~~-----------~~~~~~~~~~~~~~~~-~~iliTtR~~~--~~~-~~~---~~~~~~l~~l~~~e 152 (1237)
-+++|.||.++.... -.+..+..-+...... .-+||...++. +.. -+. -+..+.++.-+.+.
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 578999998843110 0111222222222222 22333333322 211 122 33567777777777
Q ss_pred hHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCc
Q 000887 153 CWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLP 188 (1237)
Q Consensus 153 a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 188 (1237)
-.++|+.++.+-... ++ -...+|+++..|.-
T Consensus 607 R~~Ilk~~~kkmp~~-~~----vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 607 RLEILKQCAKKMPFS-ED----VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHhcCCCC-cc----ccHHHHHHHhccCC
Confidence 788999887432221 11 12456776666544
No 330
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.73 E-value=0.57 Score=44.45 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHhhccC------CCccCHHHHHHHHHHHhcCCcEEEEEeCCC----CCChhhHHHhhccccCCCCCcEE
Q 000887 55 DVLRISKAILDSIKRSS------CKLEDLNSVQLELKETVFKKKFLIVLDDVW----SERYDLWQALKSPFMAGAPGSRI 124 (1237)
Q Consensus 55 ~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~----~~~~~~~~~~~~~~~~~~~~~~i 124 (1237)
+.....+..+.+++... .+....++.+-.+.+.+..++-+++-|.-. ..+.+...++...+ ....|..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 45555666777766542 244566777778888889999999988752 22333333443333 23568888
Q ss_pred EEEeCchhHHHhhc
Q 000887 125 IVTTRSMDVALTMG 138 (1237)
Q Consensus 125 liTtR~~~~~~~~~ 138 (1237)
+..|-++.++.++.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 88888988887654
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.72 E-value=0.14 Score=52.03 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccc-cCCCCeEEE-------EEcCCcCHHH--HHHHHHHHhhccCCC-------
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWV-------CVSDDFDVLR--ISKAILDSIKRSSCK------- 73 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~-~~f~~~~w~-------~~~~~~~~~~--~~~~i~~~l~~~~~~------- 73 (1237)
..+.+|.++||+|+||||..++++.+.+. ...+.++=+ ......++++ -+++.+.+.+....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678899999999999999998875532 222222221 1122234443 245566665544332
Q ss_pred --ccCHHHHHHHHHHHhcCCcEEE
Q 000887 74 --LEDLNSVQLELKETVFKKKFLI 95 (1237)
Q Consensus 74 --~~~~~~~~~~l~~~l~~~~~Ll 95 (1237)
....++.+..+.+.-...++.|
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEE
Confidence 1345566666665544434443
No 332
>PF13245 AAA_19: Part of AAA domain
Probab=94.69 E-value=0.055 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL 38 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~ 38 (1237)
-+++.|.|++|.|||+++.+.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999977776655443
No 333
>PRK06217 hypothetical protein; Validated
Probab=94.68 E-value=0.11 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
..|+|.|.+|+||||+|+++++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998754
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.68 E-value=0.16 Score=56.09 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=39.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc-cc----cCCCCeEEEEEcCCcCHHHHHHHHHHHhhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK-LT----EAFEPKAWVCVSDDFDVLRISKAILDSIKR 69 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~-~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 69 (1237)
-+++-|+|.+|+|||+|+.+++-.. .. ..-..++|++....++..++.+ ++.+++.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3677899999999999999976422 21 1124678999888777776654 4555543
No 335
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.022 Score=55.27 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 578899999999999999988743
No 336
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.66 E-value=0.74 Score=50.59 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=35.1
Q ss_pred eEeCCCCChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHH
Q 000887 142 NYELKLLSDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAA 191 (1237)
Q Consensus 142 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 191 (1237)
++++++++.+|+..++.-......-.. ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 1334556777777779999654
No 337
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.16 Score=57.47 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
.-.+++++|+.|+||||++..++.... ....+.+..+...... ...+-+...++.++.+.....+..+....+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 347999999999999999999877432 2233444555443322 22223444555555544444444554444333 33
Q ss_pred CCcEEEEEeCC
Q 000887 90 KKKFLIVLDDV 100 (1237)
Q Consensus 90 ~~~~LlvlDdv 100 (1237)
+ .-++++|-+
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345667776
No 338
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.66 E-value=0.13 Score=56.87 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc-ccc----CCCCeEEEEEcCCcCHHHHHHHHHHHhh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILDSIK 68 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~-~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 68 (1237)
-.++-|+|.+|+|||++|..++... ... .-..++|++....++.+++. +++..++
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 4678899999999999999876432 111 11258899988887776654 4555554
No 339
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.2 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999885
No 340
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.62 E-value=0.13 Score=56.96 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-c----CCCCeEEEEEcCCcCHHHHHHHHHHHh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-E----AFEPKAWVCVSDDFDVLRISKAILDSI 67 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~----~f~~~~w~~~~~~~~~~~~~~~i~~~l 67 (1237)
-+++-|+|.+|+|||++|.+++..... . .-..++|++....++...+. +++..+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 478899999999999999998764321 1 11268899988777766554 334443
No 341
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.14 Score=55.84 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 88 (1237)
.+|.|-|-+|||||||..+++++..+.. .+.||+-... ..++ +--+.+++.... ...+.+++...+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ-- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh--
Confidence 5789999999999999999988654333 6888864333 3222 223445553322 23456665555554
Q ss_pred cCCcEEEEEeCCC
Q 000887 89 FKKKFLIVLDDVW 101 (1237)
Q Consensus 89 ~~~~~LlvlDdv~ 101 (1237)
.++-++|+|.+.
T Consensus 167 -~~p~lvVIDSIQ 178 (456)
T COG1066 167 -EKPDLVVIDSIQ 178 (456)
T ss_pred -cCCCEEEEeccc
Confidence 589999999983
No 342
>PRK05973 replicative DNA helicase; Provisional
Probab=94.59 E-value=0.11 Score=53.78 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
.++.|.|.+|+|||++|.+++....++ -..++|++....
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC
Confidence 588999999999999999987644443 345777776554
No 343
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.58 E-value=0.15 Score=55.90 Aligned_cols=90 Identities=12% Similarity=0.038 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcC--HHHHHHHHHHHhhccC---CCccCHH-HHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFD--VLRISKAILDSIKRSS---CKLEDLN-SVQLEL 84 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~--~~~~~~~i~~~l~~~~---~~~~~~~-~~~~~l 84 (1237)
....+++++|++|+||||++..++........ .+..++...... ..+ +...+...+.+. ....++. .....+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~-~V~Li~~D~~r~~a~eq-l~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGK-KVLLAAGDTFRAAAIEQ-LQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-eEEEEecCccchhhHHH-HHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999999999875433322 355554432211 111 112233333221 1112222 223344
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 000887 85 KETVFKKKFLIVLDDVWS 102 (1237)
Q Consensus 85 ~~~l~~~~~LlvlDdv~~ 102 (1237)
.....+.-=++|+|-.-.
T Consensus 190 ~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 190 QAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHhCCCCEEEEeCCCC
Confidence 444445556888898843
No 344
>PLN02924 thymidylate kinase
Probab=94.57 E-value=0.14 Score=53.00 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP 44 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~ 44 (1237)
.-..|+|-|..|+||||+|..+++......+..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 346899999999999999999988655555553
No 345
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.57 E-value=0.069 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+|.++|++|+||||+|++++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988754
No 346
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.56 E-value=0.11 Score=56.87 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc-cc----cCCCCeEEEEEcCCcCHHHHHHHHHHHhhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK-LT----EAFEPKAWVCVSDDFDVLRISKAILDSIKR 69 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~-~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 69 (1237)
+++-|+|.+|+|||++|.+++... .. ..-..++|++....++.+++.+ ++.+++.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 678899999999999999876422 11 1124688999888777776653 4555543
No 347
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.56 E-value=0.067 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
++++|.|+.|.||||+.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999865
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.55 E-value=0.11 Score=63.96 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-CC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF-KK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 91 (1237)
...+.++|++|+|||.+|+.++... . ...+.++++...... .+..-++.+.... ..++ ...+.+.++ ..
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l-~---~~~i~id~se~~~~~----~~~~LiG~~~gyv-g~~~-~g~L~~~v~~~p 557 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKAL-G---IELLRFDMSEYMERH----TVSRLIGAPPGYV-GFDQ-GGLLTDAVIKHP 557 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-C---CCcEEeechhhcccc----cHHHHcCCCCCcc-cccc-cchHHHHHHhCC
Confidence 4578999999999999999987743 2 233455544322111 1222223221110 0010 112223333 34
Q ss_pred cEEEEEeCCCCCChhhHHHhhccc
Q 000887 92 KFLIVLDDVWSERYDLWQALKSPF 115 (1237)
Q Consensus 92 ~~LlvlDdv~~~~~~~~~~~~~~~ 115 (1237)
..+|+||+++..+.+.+..+...+
T Consensus 558 ~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 558 HAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred CcEEEeccHhhhhHHHHHHHHHHH
Confidence 579999999766555555554433
No 349
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.55 E-value=0.093 Score=57.58 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCV 50 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~ 50 (1237)
++++.|++|+||||+++.+++... ...+ .+.+++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~ 36 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITY 36 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcc
Confidence 368999999999999999887543 3333 3445544
No 350
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.54 E-value=0.15 Score=47.97 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCCCcccEEeccCCCCccccCCCCC--CCCcCceEecCCCCcccccccccCCCCCCceEEEcCCCCceeccCCCCccccC
Q 000887 1059 GTLSSLRELALSECPGIVVFPEEGL--STNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILP 1136 (1237)
Q Consensus 1059 ~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 1136 (1237)
..+++|+.+.+.. .+..++...+ +++|+.+.+.+. +..+....|.++++|+.+.+.+ .+..++. ..+...
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~--~~F~~~ 80 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGD--NAFSNC 80 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-T--TTTTT-
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccc--cccccc
Confidence 4667788888764 4566666633 567888888763 6666666788887888888865 4555554 344456
Q ss_pred CCcCeeeecCCCCccccCcccCCCCCCCCeeeecCCCCcccCCC
Q 000887 1137 TSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPE 1180 (1237)
Q Consensus 1137 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~ 1180 (1237)
++|+.+++.. .+..++...|.++ .|+.+.+.. .++.++.
T Consensus 81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEE 119 (129)
T ss_dssp TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS---
T ss_pred ccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECC
Confidence 7788888754 3666776777776 777777654 4444444
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.53 E-value=0.056 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+|.|.|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 352
>PRK06696 uridine kinase; Validated
Probab=94.51 E-value=0.033 Score=58.33 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
.+++.+|+|.|.+|+||||+|.++++..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998753
No 353
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.51 E-value=0.37 Score=45.49 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+.|.|++|+|||||.++++.
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 589999999999999999886
No 354
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.093 Score=54.85 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc--cccCCC-------CeEEEEEcCC-cCHHHHHHHHHHHhhccC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK--LTEAFE-------PKAWVCVSDD-FDVLRISKAILDSIKRSS 71 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~--~~~~f~-------~~~w~~~~~~-~~~~~~~~~i~~~l~~~~ 71 (1237)
++.|+|.||+|||+++...+=.. -++.|. .++++++... .++..-++.+..+++.+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 34567999999999998854322 234443 5678887654 356666677777777654
No 355
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.50 E-value=0.13 Score=55.41 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCC--CCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF--EPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV 88 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f--~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 88 (1237)
..+.+|||.|..|+||||+|+.+.. ...... ..+..+....-....+........-........+.+.....+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~-ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA-LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 5678999999999999999987654 322222 1244454433322222222211000011124456666666666654
Q ss_pred cCC
Q 000887 89 FKK 91 (1237)
Q Consensus 89 ~~~ 91 (1237)
.++
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 443
No 356
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.78 Score=53.63 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFL 94 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 94 (1237)
=|.++|++|.|||-||.+++... ..-++++-.. +-+.+.+|.. .+..+..+.+.-..++|+
T Consensus 703 giLLyGppGcGKT~la~a~a~~~------~~~fisvKGP-------ElL~KyIGaS------Eq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS------NLRFISVKGP-------ELLSKYIGAS------EQNVRDLFERAQSAKPCI 763 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCH-------HHHHHHhccc------HHHHHHHHHHhhccCCeE
Confidence 47899999999999999988742 1225655443 2222333322 122233333333469999
Q ss_pred EEEeCCCCCC-------hh----hHHHhhccccC--CCCCcEEEE-EeCchhHHHhh-c---CCCeEeCCCCChhhhHHH
Q 000887 95 IVLDDVWSER-------YD----LWQALKSPFMA--GAPGSRIIV-TTRSMDVALTM-G---SGKNYELKLLSDDDCWSV 156 (1237)
Q Consensus 95 lvlDdv~~~~-------~~----~~~~~~~~~~~--~~~~~~ili-TtR~~~~~~~~-~---~~~~~~l~~l~~~ea~~l 156 (1237)
+.||..++.. .. .+.++...+.. +-.|..|+- |||-..+.... + -++.+.=+.-++.|-.++
T Consensus 764 LFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred EEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHH
Confidence 9999996521 11 11222222211 124555554 55543322211 1 123444455567788888
Q ss_pred HHHHhcCCCCCCCCCChHHHHHHHHHHccCCchH
Q 000887 157 FVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLA 190 (1237)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 190 (1237)
|+..+..-.... ....+.++.+.+|.--|
T Consensus 844 l~~ls~s~~~~~-----~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 844 LQVLSNSLLKDT-----DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHhhccCCcc-----ccchHHHhhhcCCCchh
Confidence 887663211111 12245777777776543
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.13 Score=50.44 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=63.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.+++|.|..|.|||||++.++... ....+.+++.-...... ........+.... +....+...-.+...+...+=
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999987632 23445555532211110 0111111122111 122334444455666666788
Q ss_pred EEEEeCCCCCC-hhhHHHhhccccCC-CCCcEEEEEeCchhHHHhh
Q 000887 94 LIVLDDVWSER-YDLWQALKSPFMAG-APGSRIIVTTRSMDVALTM 137 (1237)
Q Consensus 94 LlvlDdv~~~~-~~~~~~~~~~~~~~-~~~~~iliTtR~~~~~~~~ 137 (1237)
++++|+....- ......+...+... ..+..++++|.+.......
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 99999985421 11222222222211 1256788888887766543
No 358
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.47 E-value=0.47 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 359
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.47 E-value=0.22 Score=61.97 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=70.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
-.++.++|++|+|||++|+.++... ...| +-+.++...+...+...-... ...........+... ....
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l-~~~~---~~i~~~~~~d~~~i~g~~~~~------~g~~~G~~~~~l~~~-~~~~ 417 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKAT-GRKY---VRMALGGVRDEAEIRGHRRTY------IGSMPGKLIQKMAKV-GVKN 417 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCE---EEEEcCCCCCHHHhccchhcc------CCCCCcHHHHHHHhc-CCCC
Confidence 3579999999999999999988743 2222 234444444432222111001 111122233333322 2234
Q ss_pred EEEEEeCCCCCChh----hHHHhhccccC---------------CCCCcEEEEEeCchhHHHhh-cCCCeEeCCCCChhh
Q 000887 93 FLIVLDDVWSERYD----LWQALKSPFMA---------------GAPGSRIIVTTRSMDVALTM-GSGKNYELKLLSDDD 152 (1237)
Q Consensus 93 ~LlvlDdv~~~~~~----~~~~~~~~~~~---------------~~~~~~iliTtR~~~~~~~~-~~~~~~~l~~l~~~e 152 (1237)
-++++|.++....+ ..+++...+-+ .-.+.-+|.|+....+...+ +...++++.+++++|
T Consensus 418 ~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~ee 497 (784)
T PRK10787 418 PLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDE 497 (784)
T ss_pred CEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHH
Confidence 47889999543211 12333332221 11334455555543332222 222578899999998
Q ss_pred hHHHHHHHh
Q 000887 153 CWSVFVAHA 161 (1237)
Q Consensus 153 a~~l~~~~~ 161 (1237)
-.++.+.+.
T Consensus 498 k~~Ia~~~L 506 (784)
T PRK10787 498 KLNIAKRHL 506 (784)
T ss_pred HHHHHHHhh
Confidence 888877665
No 360
>PRK05439 pantothenate kinase; Provisional
Probab=94.46 E-value=0.2 Score=54.21 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHhccccc-CCCCeEEEEEcCCcCHHHHHHHHHHHhh-ccCCCccCHHHHHHHHHH
Q 000887 9 DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSDDFDVLRISKAILDSIK-RSSCKLEDLNSVQLELKE 86 (1237)
Q Consensus 9 ~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~ 86 (1237)
..+.+-+|+|.|.+|+||||+|+.+.....+. ....+.-++..+-....+.+..- ..+. ......-+.+.....+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 34567899999999999999999987632221 11234444433322222221110 1111 111234566666666666
Q ss_pred HhcCCc
Q 000887 87 TVFKKK 92 (1237)
Q Consensus 87 ~l~~~~ 92 (1237)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 655554
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.42 E-value=0.17 Score=54.08 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=31.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
.-+++.|.|.+|+|||++|.+++....+. -..++|++....
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCC
Confidence 34789999999999999999986643333 346788887643
No 362
>PRK07667 uridine kinase; Provisional
Probab=94.40 E-value=0.046 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
++..+|+|.|.+|+||||+|..+++..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455899999999999999999988743
No 363
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.37 E-value=0.34 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 59 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 59 (1237)
+.|.|.|++|+|||++|+.+++.. .. ..+.+.+....+..++
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l-~~---~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARL-NW---PCVRVNLDSHVSRIDL 106 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHH-CC---CeEEEEecCCCChhhc
Confidence 458999999999999999998743 21 2345655555444333
No 364
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.36 E-value=0.32 Score=59.56 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=68.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+-|.++|++|+|||++|+.++... ...| +.++.++ +.... . ..........+.......++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~-~~~f---~~is~~~------~~~~~---~------g~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA-KVPF---FTISGSD------FVEMF---V------GVGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc-CCCE---EEEehHH------hHHhh---h------cccHHHHHHHHHHHHhcCCc
Confidence 348999999999999999987742 2111 2222111 11100 0 01112223333333345789
Q ss_pred EEEEeCCCCCC----------hhhH----HHhhccccCC--CCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCChhh
Q 000887 94 LIVLDDVWSER----------YDLW----QALKSPFMAG--APGSRIIVTTRSMDVALT-M----GSGKNYELKLLSDDD 152 (1237)
Q Consensus 94 LlvlDdv~~~~----------~~~~----~~~~~~~~~~--~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~~e 152 (1237)
+|++|+++.-. .... ..+...+... ..+.-+|.||..++.... . .-+..+.++..+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999994420 0011 1111111111 234445556766543221 1 123578888888888
Q ss_pred hHHHHHHHhc
Q 000887 153 CWSVFVAHAF 162 (1237)
Q Consensus 153 a~~l~~~~~~ 162 (1237)
..++++.+..
T Consensus 327 R~~Il~~~~~ 336 (644)
T PRK10733 327 REQILKVHMR 336 (644)
T ss_pred HHHHHHHHhh
Confidence 8888888764
No 365
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.038 Score=55.44 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..+.+|||.|.+|+||||+|++++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998874
No 366
>PRK06762 hypothetical protein; Provisional
Probab=94.34 E-value=0.036 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+++|+|.|++|+||||+|++++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 367
>PRK06547 hypothetical protein; Provisional
Probab=94.34 E-value=0.042 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
....+|+|.|++|+||||+|..+++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998874
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.33 E-value=0.18 Score=56.69 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 88 (1237)
.++.|.|.+|+|||+|+.+++....+. -..++|++.... ..++. .-+.+++.... ...+.+++...+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~--- 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE--- 155 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH---
Confidence 689999999999999999988744332 245778875432 33322 22334443221 1233444444443
Q ss_pred cCCcEEEEEeCC
Q 000887 89 FKKKFLIVLDDV 100 (1237)
Q Consensus 89 ~~~~~LlvlDdv 100 (1237)
..+.-+||+|.+
T Consensus 156 ~~~~~lVVIDSI 167 (372)
T cd01121 156 ELKPDLVIIDSI 167 (372)
T ss_pred hcCCcEEEEcch
Confidence 236778999998
No 369
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.32 E-value=0.04 Score=57.17 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998874
No 370
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.32 E-value=0.25 Score=58.94 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.-|.|+|.+|+|||++|+.+++
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999865
No 371
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.13 Score=51.51 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+.++=|.++|++|.|||.||++|+++
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 44566889999999999999999884
No 372
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.29 E-value=0.28 Score=50.75 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=37.0
Q ss_pred HHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchhHHHhhcCCCeEeCCCCCh
Q 000887 83 ELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVALTMGSGKNYELKLLSD 150 (1237)
Q Consensus 83 ~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~ 150 (1237)
.+...+-.++-++++|+-... +......+...+.. ...|..||++|.+...... ..++.++.+..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 345555667889999997442 11222233333322 1236678999888765533 55677666443
No 373
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.28 E-value=0.24 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|+.|+|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999876
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.15 Score=57.78 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhcc-----CCCccCHH------HHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRS-----SCKLEDLN------SVQL 82 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~------~~~~ 82 (1237)
..++|+|.+|+|||||+..++... ....++++..-.+..++..+........... ........ ...-
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~--~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD--AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 478999999999999999876532 1122344443334555555444433332111 11111111 1112
Q ss_pred HHHHHh--cCCcEEEEEeCC
Q 000887 83 ELKETV--FKKKFLIVLDDV 100 (1237)
Q Consensus 83 ~l~~~l--~~~~~LlvlDdv 100 (1237)
.+.+++ +++++|+++||+
T Consensus 244 ~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 234444 368999999999
No 375
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.28 E-value=0.052 Score=51.51 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSD 52 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~ 52 (1237)
++|.|+|..|+|||||++.+.+...++.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 589999999999999999999876667777666777655
No 376
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.23 Score=50.84 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.|+|.|++|+|||||.+.++.
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999876
No 377
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.26 E-value=0.037 Score=53.35 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+|.+.|++|+||||+|++++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998753
No 378
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.25 E-value=0.27 Score=50.51 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEE-------------------cCCcCH--HHHHHHHHHHhhccCC
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV-------------------SDDFDV--LRISKAILDSIKRSSC 72 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~-------------------~~~~~~--~~~~~~i~~~l~~~~~ 72 (1237)
.+++|.|..|.|||||++.++.......-.+.+.++- .+.... .....+++.. ...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~---~~~ 103 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY---VNE 103 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh---ccc
Confidence 4899999999999999999877410011112222210 111000 0001111111 111
Q ss_pred CccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCC-CCCcEEEEEeCchhHHHh
Q 000887 73 KLEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iliTtR~~~~~~~ 136 (1237)
.....+...-.+.+.+-.++=++++|+.... +......+...+... ..+..||++|.+......
T Consensus 104 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 2223334444566666678889999998442 112222233322221 236678999988776543
No 379
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.24 E-value=0.25 Score=52.63 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF- 89 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 89 (1237)
...+++++|.+|+||||++..++....... ..+.+++..... ....-++..+..++.+.....+.++....+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 346999999999999999999876433222 235566654332 11111222333333222223445555544443322
Q ss_pred CCcEEEEEeCCCC
Q 000887 90 KKKFLIVLDDVWS 102 (1237)
Q Consensus 90 ~~~~LlvlDdv~~ 102 (1237)
++.-++|+|-.-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2467889999854
No 380
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.18 E-value=0.18 Score=55.53 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=36.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcc-ccc----CCCCeEEEEEcCCcCHHHHHHHHHHHh
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILDSI 67 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~-~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l 67 (1237)
.-.++.|+|.+|+|||++|..++... ... .-..++|++....++...+ .+++..+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 34789999999999999999986522 111 1135789987776666543 3344444
No 381
>PRK15453 phosphoribulokinase; Provisional
Probab=94.18 E-value=0.27 Score=51.74 Aligned_cols=79 Identities=18% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc--CHHHHHHHHHH--Hhhc--cC--CCccCHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILD--SIKR--SS--CKLEDLNSVQL 82 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~--~l~~--~~--~~~~~~~~~~~ 82 (1237)
....+|+|.|.+|+||||+|+++++.. +..-..++.+....-. +.......+.. +-+. .- ....+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if-~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF-RRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-hhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 456899999999999999999987632 2211223444433222 32222222211 1111 11 24566777777
Q ss_pred HHHHHhcC
Q 000887 83 ELKETVFK 90 (1237)
Q Consensus 83 ~l~~~l~~ 90 (1237)
.+++..++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77766543
No 382
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.18 E-value=0.098 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999987743
No 383
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.17 E-value=0.16 Score=56.33 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=38.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc-cC----CCCeEEEEEcCCcCHHHHHHHHHHHh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EA----FEPKAWVCVSDDFDVLRISKAILDSI 67 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~-~~----f~~~~w~~~~~~~~~~~~~~~i~~~l 67 (1237)
-.++-|+|.+|+|||++|.+++..... .. -..++|++....++...+.+ ++..+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 468889999999999999998764321 11 13688999888777666543 33443
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.15 E-value=0.12 Score=52.88 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCcc-------CHHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLE-------DLNSVQLELKE 86 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l~~ 86 (1237)
++++|.|+.|.||||+.+.++......+. .+++.+... ...+...+...++..+.... +..+.. .+.+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~--G~~vpa~~~--~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQI--GCFVPAEYA--TLPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHc--CCCcchhhc--CccChhheeEecCCccccchhhhHHHHHHHHHH-HHHH
Confidence 78999999999999999987643211111 111111110 01122222222222211100 111111 1111
Q ss_pred HhcCCcEEEEEeCCCCCC-hhh----HHHhhccccCCCCCcEEEEEeCchhHHHhhc
Q 000887 87 TVFKKKFLIVLDDVWSER-YDL----WQALKSPFMAGAPGSRIIVTTRSMDVALTMG 138 (1237)
Q Consensus 87 ~l~~~~~LlvlDdv~~~~-~~~----~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~ 138 (1237)
+..++-|+++|...... ..+ ..++...+.. .+..+|++|-+..+.....
T Consensus 105 -~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 -YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23568899999974321 111 1223333332 3788999999988876554
No 385
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.14 E-value=0.39 Score=62.97 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.++=|.++|++|+|||-||+++|.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3556889999999999999999885
No 386
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.13 E-value=0.15 Score=58.24 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhcc------CCCccCHH------HH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRS------SCKLEDLN------SV 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~~~------~~ 80 (1237)
..++|.|.+|+|||+|+.++++...+.+-+.++++-++.. ..+.++..++...-... ......+. ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 4689999999999999999887554445566667766543 34555555554322111 00111111 12
Q ss_pred HHHHHHHhc---CCcEEEEEeCCC
Q 000887 81 QLELKETVF---KKKFLIVLDDVW 101 (1237)
Q Consensus 81 ~~~l~~~l~---~~~~LlvlDdv~ 101 (1237)
+..+.++++ ++++|+++|++.
T Consensus 224 a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccch
Confidence 223445552 689999999993
No 387
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.13 E-value=0.46 Score=50.72 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=59.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhc-cC-------CCccCHHHHHHH
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKR-SS-------CKLEDLNSVQLE 83 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~~~~~~~~ 83 (1237)
..+-++|.|+.|+||||+.+.++.. .. ...+.+++.-.+ ....+...+++..... +. +...+... ...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~-~~-~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI-LS-TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc-cC-CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchH-HHH
Confidence 3578999999999999999998863 22 223344442111 1111111233322211 10 01111111 112
Q ss_pred HHHHhc-CCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHH
Q 000887 84 LKETVF-KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 84 l~~~l~-~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~ 134 (1237)
+...++ ..+=++|+|.+.. ...+.++...+. .|..||+||-+..+.
T Consensus 186 ~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 333333 5788999999843 344444444432 477899999876553
No 388
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.13 E-value=0.32 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998774
No 389
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.13 E-value=0.14 Score=52.46 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhccC------CCccCH-HHHH-----
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRSS------CKLEDL-NSVQ----- 81 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~-~~~~----- 81 (1237)
.++|.|.+|+|||+|+.++++.. .-+.++++.++.. ..+.++.+++...-.... ...... .+..
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~---~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ---DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC---TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc---cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 68899999999999999998753 2333477777644 455556665543311110 011111 1111
Q ss_pred HHHHHHh--cCCcEEEEEeCC
Q 000887 82 LELKETV--FKKKFLIVLDDV 100 (1237)
Q Consensus 82 ~~l~~~l--~~~~~LlvlDdv 100 (1237)
-.+.+++ +++++|+|+||.
T Consensus 94 ~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETH
T ss_pred hhhhHHHhhcCCceeehhhhh
Confidence 1122333 578999999998
No 390
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.52 Score=56.35 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
...+.+-++|++|.|||.||++++.. .+..| +.+... + +. ... .......+...+....+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~-~~~~f-----i~v~~~-~---l~----sk~-----vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE-SRSRF-----ISVKGS-E---LL----SKW-----VGESEKNIRELFEKARKL 334 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh-CCCeE-----EEeeCH-H---Hh----ccc-----cchHHHHHHHHHHHHHcC
Confidence 44568999999999999999999883 22222 222221 1 11 100 111112222333334456
Q ss_pred CcEEEEEeCCCCC------Ch-----hhHHHhhccccC--CCCCcEEEEEeCchhHHHh-h----cCCCeEeCCCCChhh
Q 000887 91 KKFLIVLDDVWSE------RY-----DLWQALKSPFMA--GAPGSRIIVTTRSMDVALT-M----GSGKNYELKLLSDDD 152 (1237)
Q Consensus 91 ~~~LlvlDdv~~~------~~-----~~~~~~~~~~~~--~~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~l~~~e 152 (1237)
.++.|.+|+++.- .. .....+...+.. ...+..||-||-.+..... + .-...+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 8999999999431 10 122233333322 2233334444443332221 1 123578899999999
Q ss_pred hHHHHHHHhc
Q 000887 153 CWSVFVAHAF 162 (1237)
Q Consensus 153 a~~l~~~~~~ 162 (1237)
..+.|..+..
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.039 Score=54.47 Aligned_cols=47 Identities=30% Similarity=0.253 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 63 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 63 (1237)
-.+|+|-||-|+||||||.+++++. + +. +++-.+.+.+=.+...++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~--~~-~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G--FK-VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C--Cc-eeeecccCChHHHHHHHhH
Confidence 4689999999999999999988753 2 22 4444455554344444433
No 392
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.08 E-value=0.44 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998763
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.08 E-value=0.42 Score=48.75 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEE---------------EcCCcC---HHHHHHHHHHHhhccCCCcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC---------------VSDDFD---VLRISKAILDSIKRSSCKLE 75 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~---------------~~~~~~---~~~~~~~i~~~l~~~~~~~~ 75 (1237)
.+++|.|+.|.|||||.+.++.-.......+.++++ +.+... ...+.+.+....... ...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~LS 113 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--GLS 113 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--cCC
Confidence 479999999999999999987632002222322221 011110 012222221110000 122
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccC-CCCCcEEEEEeCchh
Q 000887 76 DLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMD 132 (1237)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iliTtR~~~ 132 (1237)
..+...-.+.+.+-.++-++++|+.... +......+...+.. ...+..||++|.+..
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 2333344555666677789999998442 11222223222222 123667888888764
No 394
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.07 E-value=0.049 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..-.+|+|.|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998763
No 395
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.05 E-value=0.19 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 000887 16 IPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~ 36 (1237)
|+|.|++|+||||+|+++.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 396
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=1.5 Score=47.69 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=86.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccc--------c-CCCCeEEEEE-cCCcCHHHHHHHHHHHhhccCCCccCHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLT--------E-AFEPKAWVCV-SDDFDVLRISKAILDSIKRSSCKLEDLNSVQL 82 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~--------~-~f~~~~w~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 82 (1237)
.++..++|..|+||+++|.++++...- . +-+.+.+++. +....++++. ++...+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 456679999999999999998775411 1 1112333321 1111222222 1222221110
Q ss_pred HHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeC-chhHHHhh-cCCCeEeCCCCChhhhHHHHHHH
Q 000887 83 ELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTR-SMDVALTM-GSGKNYELKLLSDDDCWSVFVAH 160 (1237)
Q Consensus 83 ~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR-~~~~~~~~-~~~~~~~l~~l~~~ea~~l~~~~ 160 (1237)
.-.+++-++|+|+++.-+.....++...+-.-++++.+|++|. ...+...+ .....+++.++++++..+.+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 0014677888999855544455556666655556676665554 33343332 23468999999999998877653
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHccCCchHHHHH
Q 000887 161 AFEGRDAGTHGNFESTRQRVVEKCKGLPLAARAL 194 (1237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 194 (1237)
. .+ ++.+..++...+|.--|+..+
T Consensus 162 ~------~~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 162 N------KE----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred C------CC----hhHHHHHHHHcCCHHHHHHHH
Confidence 1 11 334666677777633555553
No 397
>PTZ00035 Rad51 protein; Provisional
Probab=94.05 E-value=0.29 Score=54.38 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-c----cCCCCeEEEEEcCCcCHHHHHHHHHHHhh
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-T----EAFEPKAWVCVSDDFDVLRISKAILDSIK 68 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 68 (1237)
-.++.|+|.+|+|||+++..++.... . ..-..++|++....++..++ .++++.++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 46889999999999999998764321 1 12235679987666665553 33444443
No 398
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.098 Score=49.82 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcccccCC
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF 42 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f 42 (1237)
+..+|-++|.+|+||||+|.+++.......+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999998875544443
No 399
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.03 E-value=0.3 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 400
>PRK14527 adenylate kinase; Provisional
Probab=94.02 E-value=0.11 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
...+|.|.|++|+||||+|+.+++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998764
No 401
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.00 E-value=0.23 Score=51.96 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFL 94 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 94 (1237)
.+.++|.+|+|||+-++.+++. .+..+.+..+...+...+...+....... ......+....+...+++..-+
T Consensus 96 l~~vyg~~g~gKt~a~~~y~~s-----~p~~~l~~~~p~~~a~~~i~~i~~~~~~~--~~~~~~d~~~~~~~~l~~~~~~ 168 (297)
T COG2842 96 LVVVYGYAGLGKTQAAKNYAPS-----NPNALLIEADPSYTALVLILIICAAAFGA--TDGTINDLTERLMIRLRDTVRL 168 (297)
T ss_pred eEEEeccccchhHHHHHhhccc-----CccceeecCChhhHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHccCcce
Confidence 8899999999999999998763 33344444555555555555555544433 2234445555666666889999
Q ss_pred EEEeCCCCCChhhHHHhhccc
Q 000887 95 IVLDDVWSERYDLWQALKSPF 115 (1237)
Q Consensus 95 lvlDdv~~~~~~~~~~~~~~~ 115 (1237)
+++|+++.-....++.+....
T Consensus 169 iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 169 IIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred eeeehhhccChHHHHHHHHHH
Confidence 999999665455555554443
No 402
>PRK04328 hypothetical protein; Provisional
Probab=93.99 E-value=0.22 Score=52.94 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
=.++.|.|.+|+|||++|.+++....++ -..++|++....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCC
Confidence 3688999999999999999987643333 456888887654
No 403
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.97 E-value=0.45 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.++|+|++|+||||||+.+..
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc
Confidence 689999999999999999765
No 404
>PRK13948 shikimate kinase; Provisional
Probab=93.97 E-value=0.6 Score=46.57 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
...+.|+++|+.|+||||+++.+++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998874
No 405
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.96 E-value=0.21 Score=57.00 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhccC------CCcc-CHHH-----H
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRSS------CKLE-DLNS-----V 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~------~~~~-~~~~-----~ 80 (1237)
..++|.|.+|+|||+|+.+++....+++-+.++++-++.. ..+.++.+++...-.... .... ...+ .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 4689999999999999999876433222234567766544 345555555554321110 0111 1111 1
Q ss_pred HHHHHHHh---cCCcEEEEEeCC
Q 000887 81 QLELKETV---FKKKFLIVLDDV 100 (1237)
Q Consensus 81 ~~~l~~~l---~~~~~LlvlDdv 100 (1237)
.-.+.+++ +++++|+++|++
T Consensus 225 a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecch
Confidence 22345555 468999999999
No 406
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.96 E-value=0.16 Score=57.81 Aligned_cols=88 Identities=15% Similarity=0.227 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhcc-------CCCccCHHH-----H
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRS-------SCKLEDLNS-----V 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~ 80 (1237)
..++|.|.+|+|||+|+.+++....+.+-+.++|+-++... .+.++.+++...-... ........+ .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998775433334667788776543 4455555554321111 001111111 2
Q ss_pred HHHHHHHhc---CCcEEEEEeCCC
Q 000887 81 QLELKETVF---KKKFLIVLDDVW 101 (1237)
Q Consensus 81 ~~~l~~~l~---~~~~LlvlDdv~ 101 (1237)
+-.+.++++ ++++|+++||+.
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChH
Confidence 223455554 489999999993
No 407
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.95 E-value=0.29 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 408
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.95 E-value=0.21 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
.+...+|+|.|++|+|||||++.++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4668899999999999999999988743
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.25 Score=59.95 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhccc-ccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~-~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-++++++|+.|+||||++..++.... ......+..++.+... ...+-++..+..++.+.....+.++....+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999999887542 2222345566544322 12344455556666554444566666655554 344
Q ss_pred CcEEEEEeCCC
Q 000887 91 KKFLIVLDDVW 101 (1237)
Q Consensus 91 ~~~LlvlDdv~ 101 (1237)
+ =+|++|=+-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 4 477888874
No 410
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.92 E-value=0.29 Score=50.08 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc-ccCC--------CCeEEEEEcCC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKL-TEAF--------EPKAWVCVSDD 53 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~-~~~f--------~~~~w~~~~~~ 53 (1237)
++.|.|++|+|||+++.+++.... ...| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 789999999999999999877552 2222 35778876555
No 411
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.91 E-value=0.061 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.|+|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998874
No 412
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.89 E-value=0.93 Score=46.11 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=76.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHh-
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETV- 88 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 88 (1237)
+=.++-|..+|++|.|||.+|+++++.. +-. ++.+-.. .+ |.... .+....+..+.+.-
T Consensus 148 ~WAPknVLFyGppGTGKTm~Akalane~-kvp-----~l~vkat----~l---iGehV-------Gdgar~Ihely~rA~ 207 (368)
T COG1223 148 DWAPKNVLFYGPPGTGKTMMAKALANEA-KVP-----LLLVKAT----EL---IGEHV-------GDGARRIHELYERAR 207 (368)
T ss_pred ccCcceeEEECCCCccHHHHHHHHhccc-CCc-----eEEechH----HH---HHHHh-------hhHHHHHHHHHHHHH
Confidence 3457889999999999999999998742 211 2222111 11 11111 11122223333322
Q ss_pred cCCcEEEEEeCCCCCCh--------hh----HHHhhccccC--CCCCcEEEEEeCchhHHH-hhcC--CCeEeCCCCChh
Q 000887 89 FKKKFLIVLDDVWSERY--------DL----WQALKSPFMA--GAPGSRIIVTTRSMDVAL-TMGS--GKNYELKLLSDD 151 (1237)
Q Consensus 89 ~~~~~LlvlDdv~~~~~--------~~----~~~~~~~~~~--~~~~~~iliTtR~~~~~~-~~~~--~~~~~l~~l~~~ 151 (1237)
+.-+|++.+|..+.... .+ +.++...+.. .+-|..-|-.|....... .+.. ...++..--+.+
T Consensus 208 ~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~e 287 (368)
T COG1223 208 KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDE 287 (368)
T ss_pred hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChH
Confidence 33699999999853211 11 2222222221 233443344444333322 1111 235566666788
Q ss_pred hhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCC
Q 000887 152 DCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGL 187 (1237)
Q Consensus 152 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 187 (1237)
|-.+++...+..-.-.. ....+.++++.+|.
T Consensus 288 Er~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 288 ERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred HHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 88888887763222111 12246677776664
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.89 E-value=0.21 Score=60.88 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCCChhhHH-HhhccccCC-CCCcEEEEEeCchhH
Q 000887 79 SVQLELKETVFKKKFLIVLDDVWSERYDLWQ-ALKSPFMAG-APGSRIIVTTRSMDV 133 (1237)
Q Consensus 79 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~-~~~~~~~~~-~~~~~iliTtR~~~~ 133 (1237)
+-+-.+.+.+-.++-++|+|...+.-+...+ .+...+... ...+.|+||=|..-+
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti 671 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence 3344566777789999999999653222222 233334333 335667777776544
No 414
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.33 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.83 E-value=0.29 Score=56.51 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFK 90 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 90 (1237)
-+|++++|+.|+||||++..++... .+.....+..++..... ....-+...+..++.+.....+..+....+. .+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 4799999999999999999998754 23222245566544321 1222333344554443322223333333332 2334
Q ss_pred CcEEEEEeCCC
Q 000887 91 KKFLIVLDDVW 101 (1237)
Q Consensus 91 ~~~LlvlDdv~ 101 (1237)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477778874
No 416
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.83 E-value=0.32 Score=51.87 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 64 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 64 (1237)
.++.|.|.+|+|||++|.+++.+.....-..++|++.... ...+...++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~--~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS--KEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC--HHHHHHHHH
Confidence 5899999999999999999877554442345788876554 344444443
No 417
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.83 E-value=0.19 Score=45.57 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHhcccc
Q 000887 9 DAANFRVIPLVGMGGIGKTTLAQEVYNDKLT 39 (1237)
Q Consensus 9 ~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~ 39 (1237)
.++.+-|+..+|++|+|||-+|+.+++...+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 4577889999999999999999998886533
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.81 E-value=0.051 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+.++|+|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998864
No 419
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.79 E-value=0.44 Score=49.33 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCC-------------eEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-------------KAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNS 79 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~-------------~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 79 (1237)
-++++|.|+.|.||||+.+.++.......-.. .++.......+...-..... .+..+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~----------~e~~~ 100 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFM----------VELSE 100 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHH----------HHHHH
Confidence 36889999999999999998766221111111 22222222222211111111 11222
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCCC--hhh---HHHhhccccCCCCCcEEEEEeCchhHHHh
Q 000887 80 VQLELKETVFKKKFLIVLDDVWSER--YDL---WQALKSPFMAGAPGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 80 ~~~~l~~~l~~~~~LlvlDdv~~~~--~~~---~~~~~~~~~~~~~~~~iliTtR~~~~~~~ 136 (1237)
....++. ..++.|+++|...... .+. ...+...+... .++.+|++|-+..+...
T Consensus 101 ~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 101 TSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 2222222 2478999999973321 111 11233333322 57889999999887643
No 420
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.76 E-value=0.14 Score=53.93 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhcc---------------CCC-----
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRS---------------SCK----- 73 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~---------------~~~----- 73 (1237)
.++.|.|.+|+|||++|.+++....++.-..++|++..... ..+.+.+. .++.. ...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccccc
Confidence 58999999999999999998764434324458888865543 33333322 22210 001
Q ss_pred ccCHHHHHHHHHHHhcC-CcEEEEEeCC
Q 000887 74 LEDLNSVQLELKETVFK-KKFLIVLDDV 100 (1237)
Q Consensus 74 ~~~~~~~~~~l~~~l~~-~~~LlvlDdv 100 (1237)
..+.++....+.+.+++ +...+|+|.+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666666554 4578888887
No 421
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.44 Score=46.17 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEE
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWV 48 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~ 48 (1237)
.+.|.|+.|+|||||.+.++. ..+..-..|.|-
T Consensus 30 ~~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~ 62 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQ 62 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHc-ccCCCCCeEEec
Confidence 688999999999999999876 333333334454
No 422
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.76 E-value=0.18 Score=53.06 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccc---ccCCCCeEEEEEcCCc-CHHHHHHHHHHHhhccC------CCccC-HHH---
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKL---TEAFEPKAWVCVSDDF-DVLRISKAILDSIKRSS------CKLED-LNS--- 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~---~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~~~--- 79 (1237)
..++|.|-+|+|||+|+.++++... +..-+.++++-+++.. .+.++.+++...=.... ..... ..+
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 3679999999999999999876432 1234567788776553 45555555544321110 01111 111
Q ss_pred --HHHHHHHHhc---CCcEEEEEeCCC
Q 000887 80 --VQLELKETVF---KKKFLIVLDDVW 101 (1237)
Q Consensus 80 --~~~~l~~~l~---~~~~LlvlDdv~ 101 (1237)
..-.+.++++ ++++|+++||+.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1223445553 579999999993
No 423
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.74 E-value=0.34 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 424
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=93.73 E-value=0.072 Score=56.78 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=54.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhcc------------CCCccCHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRS------------SCKLEDLNSV 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~------------~~~~~~~~~~ 80 (1237)
..+++.|-+|+|||.+.+++.+...+.+-...+|.-++.. ..-.+++.++...-..+ ......+.-.
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValt 227 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALT 227 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhh
Confidence 4689999999999999999988654544444567766543 34556776665542111 1111111111
Q ss_pred HHHHHHHhc---CCcEEEEEeCCCC
Q 000887 81 QLELKETVF---KKKFLIVLDDVWS 102 (1237)
Q Consensus 81 ~~~l~~~l~---~~~~LlvlDdv~~ 102 (1237)
.-.+.++++ ++.+|+.+||+..
T Consensus 228 GlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 228 GLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhHHHHhhcccCCeEEEEehhhhH
Confidence 222344554 4789999999965
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.73 E-value=0.094 Score=52.53 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccC-CCCeEEEEEcCCcC
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSDDFD 55 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~-f~~~~w~~~~~~~~ 55 (1237)
.|+|+|-||+||||+|..++.....+. |. +.-+++..+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999999666554444 43 66676666544
No 426
>PRK04040 adenylate kinase; Provisional
Probab=93.73 E-value=0.055 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..+|+|+|++|+||||+++.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999998774
No 427
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.71 E-value=0.23 Score=52.38 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD 53 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~ 53 (1237)
=.++.|.|.+|+|||++|.+++....+ .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 368999999999999999987653333 2346788876443
No 428
>PRK03839 putative kinase; Provisional
Probab=93.70 E-value=0.051 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.|.|.|++|+||||+|+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 429
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.70 E-value=0.0032 Score=61.90 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=65.9
Q ss_pred cCCCCCccEEEccccccccccccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEE
Q 000887 396 LPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYL 475 (1237)
Q Consensus 396 ~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 475 (1237)
+...+..++||++.|++..+-..|+.++.|.-||++.|.|..+|..++.+..++.+++..| .....|.+++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4456677888888888777766677778888888888888888888888888888887776 777788888888888888
Q ss_pred eccCC
Q 000887 476 NIEGA 480 (1237)
Q Consensus 476 ~l~~~ 480 (1237)
++-++
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 77776
No 430
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.70 E-value=0.66 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 431
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.67 E-value=0.28 Score=55.70 Aligned_cols=88 Identities=22% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhccC------CCccC-HHH-----H
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRSS------CKLED-LNS-----V 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~-~~~-----~ 80 (1237)
..++|.|.+|+|||+|+.+++....+++-+.++++-++.. ..+.++.+++...-.... ..... ..+ .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 4689999999999999999876443333345567766544 445556665543211110 11111 111 2
Q ss_pred HHHHHHHhc---CCcEEEEEeCCC
Q 000887 81 QLELKETVF---KKKFLIVLDDVW 101 (1237)
Q Consensus 81 ~~~l~~~l~---~~~~LlvlDdv~ 101 (1237)
+-.+.++++ ++++|+++||+.
T Consensus 224 a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecchh
Confidence 223455553 579999999993
No 432
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.66 E-value=0.48 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|+.|.|||||.+.++..
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 433
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.66 E-value=0.53 Score=48.60 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|+.|+|||||++.++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.64 E-value=0.067 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHh
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
..+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999998764
No 435
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.60 E-value=0.053 Score=54.78 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~ 35 (1237)
++.|+|+.|.||||+.+.++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999874
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.58 E-value=0.08 Score=54.46 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999884
No 437
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.56 E-value=0.42 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 000887 15 VIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~ 35 (1237)
+++|.|+.|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999875
No 438
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.55 E-value=0.14 Score=64.79 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccccCC---CCeEEEEEcCCc----CHH--HHHHHHHHHhhccCCCccCHHHHHHHHH
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTEAF---EPKAWVCVSDDF----DVL--RISKAILDSIKRSSCKLEDLNSVQLELK 85 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~~f---~~~~w~~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 85 (1237)
-+.|+|.+|+||||....++-....+.+ +..+++.+.... ... .+..-+...+... ....+......
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~----~~~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ----GIAKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc----CCcchhhHHHH
Confidence 6789999999999999998764433332 233455443111 111 1222222222222 12222222335
Q ss_pred HHhcCCcEEEEEeCCCCCChhh----HHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCeEeCCCCChhhhH
Q 000887 86 ETVFKKKFLIVLDDVWSERYDL----WQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELKLLSDDDCW 154 (1237)
Q Consensus 86 ~~l~~~~~LlvlDdv~~~~~~~----~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~ea~ 154 (1237)
++++.+++++.+|.++...... ... ...+.+.-+.+++|+|+|....-........+++..+.++.-.
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 6778899999999985532211 112 2233344568899999987655433333345556666555443
No 439
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.54 E-value=0.048 Score=49.16 Aligned_cols=22 Identities=50% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 000887 16 IPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
|.|+|.+|+|||++|..++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999988754
No 440
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.53 E-value=0.37 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 000887 14 RVIPLVGMGGIGKTTLAQEVY 34 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~ 34 (1237)
.+++|.|..|+|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999984
No 441
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.51 E-value=0.42 Score=50.72 Aligned_cols=123 Identities=14% Similarity=0.065 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccc--c--CCCC--eEEEEEc----CCcCHHHHH--------------HHHHHHhhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLT--E--AFEP--KAWVCVS----DDFDVLRIS--------------KAILDSIKR 69 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~--~--~f~~--~~w~~~~----~~~~~~~~~--------------~~i~~~l~~ 69 (1237)
.+++|.|..|+|||||++.++..... . .+++ +.++.-. ...++.+.. .+++..++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 48999999999999999998774211 0 1121 2222111 011222221 122222222
Q ss_pred cC------CCccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCC--CCCcEEEEEeCchhHHHh
Q 000887 70 SS------CKLEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG--APGSRIIVTTRSMDVALT 136 (1237)
Q Consensus 70 ~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~--~~~~~iliTtR~~~~~~~ 136 (1237)
.. ......+...-.+...+...+=++++|+-... +......+...+... ..+..||++|.+......
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11 01222333444566677778899999998442 112222222222221 236679999988776544
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.50 E-value=0.085 Score=54.60 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
++++|.|+.|.||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999854
No 443
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.49 E-value=0.12 Score=56.27 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 62 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 62 (1237)
.+++.+.|-|||||||+|.+.+-..-... ..+.-++.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC-CcEEEEEeCCCCchHhhhcc
Confidence 48999999999999999999665433333 44777776666666655544
No 444
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=2.6 Score=47.14 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEEE
Q 000887 16 IPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFLI 95 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 95 (1237)
-.++|++|.|||++..++|+.. .|+ |+=+..+...+-.+ ++.++.. ...+-+|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~yd-IydLeLt~v~~n~d-Lr~LL~~----------------------t~~kSIi 290 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYD-IYDLELTEVKLDSD-LRHLLLA----------------------TPNKSIL 290 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCc-eEEeeeccccCcHH-HHHHHHh----------------------CCCCcEE
Confidence 3589999999999999998853 233 33333322222111 2222221 1356667
Q ss_pred EEeCCCCC------Ch------------hhHHHhh---ccccCCCCCcE-EEEEeCchhHHH--hh---cCCCeEeCCCC
Q 000887 96 VLDDVWSE------RY------------DLWQALK---SPFMAGAPGSR-IIVTTRSMDVAL--TM---GSGKNYELKLL 148 (1237)
Q Consensus 96 vlDdv~~~------~~------------~~~~~~~---~~~~~~~~~~~-iliTtR~~~~~~--~~---~~~~~~~l~~l 148 (1237)
|+.|++-. .. ..+..+. ..++....+-| |++||-..+-.. .+ +-+..+.+.-=
T Consensus 291 vIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyC 370 (457)
T KOG0743|consen 291 LIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYC 370 (457)
T ss_pred EEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCC
Confidence 77776321 00 0011111 11111122334 556776554321 11 22246777777
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhcC
Q 000887 149 SDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSK 201 (1237)
Q Consensus 149 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~ 201 (1237)
+.+.-..|+.+..+... + ...+.+|.+...|.-+.=..++..+-.+
T Consensus 371 tf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 371 TFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred CHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 78777788887764322 1 2345677776667655555555555444
No 445
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.46 E-value=0.34 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
...+++|.|.+|+||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999988743
No 446
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.45 E-value=0.55 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.43 E-value=0.17 Score=62.88 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 12 NFRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 12 ~~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+.++++|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999998654
No 448
>PRK00625 shikimate kinase; Provisional
Probab=93.42 E-value=0.052 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.|.++|++|+||||+|+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998774
No 449
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.40 E-value=0.46 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|+|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 450
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.39 E-value=0.29 Score=58.72 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=64.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhccccc--CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCC---ccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTE--AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCK---LEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~--~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l 88 (1237)
+++.|.|.+|.||||+++++.....+. .-...+.+......-...+.+.+...+...... .........-+.+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 588999999999999999987644221 112456666666655555665554433211000 000000112222222
Q ss_pred cC------------Cc---EEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHH
Q 000887 89 FK------------KK---FLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA 134 (1237)
Q Consensus 89 ~~------------~~---~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~ 134 (1237)
.. .+ -++|+|.+.-.+...+..+...+ .+++|+|+---..+.+
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRDQLA 305 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchhhcC
Confidence 11 11 38999998444444444555544 4578888877655443
No 451
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.36 E-value=0.042 Score=58.94 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
+-|.++|+.|+|||++++..........|- +.-+..+...+...+++.+-..+.......-.+ -.+++.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP----------~~~k~l 102 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYL-VITINFSAQTTSNQLQKIIESKLEKRRGRVYGP----------PGGKKL 102 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEE-EEEEES-TTHHHHHHHHCCCTTECECTTEEEEE----------ESSSEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccc-eeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC----------CCCcEE
Confidence 457899999999999999977643332221 334455544443333322222211110000000 125889
Q ss_pred EEEEeCCC
Q 000887 94 LIVLDDVW 101 (1237)
Q Consensus 94 LlvlDdv~ 101 (1237)
++.+||+.
T Consensus 103 v~fiDDlN 110 (272)
T PF12775_consen 103 VLFIDDLN 110 (272)
T ss_dssp EEEEETTT
T ss_pred EEEecccC
Confidence 99999993
No 452
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.35 E-value=0.56 Score=55.22 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccc------CC-CCeEEEEEcC-----CcCH------------HHHHHHHHHHhhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDKLTE------AF-EPKAWVCVSD-----DFDV------------LRISKAILDSIKRS 70 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~~~~------~f-~~~~w~~~~~-----~~~~------------~~~~~~i~~~l~~~ 70 (1237)
.|+|+|+.|+|||||.+.++...... .- -.+.|++-.. ..++ ....+..+.+++-+
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 68999999999999999985432110 00 1122332111 0011 23334444444433
Q ss_pred CC-------CccCHHHHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCe
Q 000887 71 SC-------KLEDLNSVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKN 142 (1237)
Q Consensus 71 ~~-------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~ 142 (1237)
.. .....+..+-.+...+..++=++|+|.=.++ +.+..+++...+..+ +| .||+.|-++.+..... ..+
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~~i 506 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-TRI 506 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-ceE
Confidence 22 1233444555566677789999999997543 234444455544433 34 4999999999887654 345
Q ss_pred EeCCC
Q 000887 143 YELKL 147 (1237)
Q Consensus 143 ~~l~~ 147 (1237)
+.+.+
T Consensus 507 ~~~~~ 511 (530)
T COG0488 507 WLVED 511 (530)
T ss_pred EEEcC
Confidence 55553
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.34 E-value=0.34 Score=50.74 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 63 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 63 (1237)
-.++.|.|.+|+|||++|.+++....+.. ..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 35899999999999999988766443333 3467776333 344444444
No 454
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.34 E-value=0.52 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 455
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.33 E-value=0.52 Score=58.83 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc--ccc-------------CCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCcc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK--LTE-------------AFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLE 75 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~--~~~-------------~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 75 (1237)
++.+++.|+|+.+.||||+.+.++-.. .+. .|+ .++...++..++..-...+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m-------- 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHM-------- 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHH--------
Confidence 345789999999999999999875421 000 111 23344444333322222222111
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEeCCCCCC-hhhHHHh----hccccCCCCCcEEEEEeCchhHHHhhcCCCeEeCCCCCh
Q 000887 76 DLNSVQLELKETVFKKKFLIVLDDVWSER-YDLWQAL----KSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELKLLSD 150 (1237)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~~----~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~ 150 (1237)
.+....+. .+ ..+-|+++|...... ......+ ...+. ..|+.+|+||-+..+.........+....+..
T Consensus 396 --~~~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 396 --TNIVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred --HHHHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 11222222 22 477899999985432 1222222 22222 24789999999987765433222111111111
Q ss_pred -hhhHHHHHHHhcCCCCCCCCCChHHHHHHHHHHccCCchHHHHHHhHhhc
Q 000887 151 -DDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRS 200 (1237)
Q Consensus 151 -~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 200 (1237)
++......+.. .+... ...|-+|++++ |+|-.+.--|..+..
T Consensus 470 d~~~l~~~Ykl~--~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 470 DEETLRPTYRLL--IGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIG 512 (782)
T ss_pred ecCcCcEEEEEe--eCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHh
Confidence 11111111111 11111 34577888887 566666655555443
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.30 E-value=0.66 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|.|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 37999999999999999998763
No 457
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.28 E-value=0.0048 Score=60.67 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred ccccc-ccccCCCCCCeEEccCCCccccchhhcccCCccEEEcCccccCccCChhhcccccccEEeccCCCccccCcccc
Q 000887 412 ITEVP-ISIGCLKQLRYLNFSRSEIQCLPDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIEGASALRELPLGM 490 (1237)
Q Consensus 412 i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ip~~~ 490 (1237)
++++| .++.....-++||++.|++-.+-..|+.+..|..||++.| .+..+|.+++.+..++++++..| .....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCccc
Confidence 44555 4567788999999999999888889999999999999998 99999999999999999999888 789999999
Q ss_pred cccccccccce
Q 000887 491 KELKCLRTLTN 501 (1237)
Q Consensus 491 ~~L~~L~~L~~ 501 (1237)
++++.++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999998865
No 458
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.27 E-value=0.058 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
+|+|.|.+|+||||+|++++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 459
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.26 E-value=0.25 Score=60.18 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=55.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHH
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKET 87 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 87 (1237)
-+++-|+|.+|+|||+||.+++....+ .-..++|++.....+. ..+.+++.... .....++....+...
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 478889999999999999987653322 2345789987666553 35566654322 344556666666665
Q ss_pred hcC-CcEEEEEeCC
Q 000887 88 VFK-KKFLIVLDDV 100 (1237)
Q Consensus 88 l~~-~~~LlvlDdv 100 (1237)
.+. +.-+||+|.+
T Consensus 134 v~~~~~~LVVIDSI 147 (790)
T PRK09519 134 IRSGALDIVVIDSV 147 (790)
T ss_pred hhcCCCeEEEEcch
Confidence 544 5778999998
No 460
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.7 Score=49.01 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCC-ChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCeEeC
Q 000887 79 SVQLELKETVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYEL 145 (1237)
Q Consensus 79 ~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 145 (1237)
...-.+.+.+-.++=++|+|+.... +......+...+.....|..||++|.+...... ....+.+
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 3334456666778899999998542 112222233333222226678888888776643 3444444
No 461
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.71 Score=48.69 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|+.|+|||||++.++..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998763
No 462
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.23 E-value=0.039 Score=50.07 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccccCCC
Q 000887 16 IPLVGMGGIGKTTLAQEVYNDKLTEAFE 43 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~~~~~~f~ 43 (1237)
|-|.|.+|+|||++|++++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCcee
Confidence 679999999999999998874 444453
No 463
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.19 E-value=0.18 Score=47.42 Aligned_cols=102 Identities=18% Similarity=0.337 Sum_probs=52.6
Q ss_pred hhhhhcCCCCCccEEEcccccccccc-ccccCCCCCCeEEccCCCccccch-hhcccCCccEEEcCccccCccCChh-hc
Q 000887 391 VLSDLLPQCKKLRVLSLGSYCITEVP-ISIGCLKQLRYLNFSRSEIQCLPD-AICSLFNLEILILRNCWCLLKLPSR-IG 467 (1237)
Q Consensus 391 ~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~ 467 (1237)
+.+..|.++++|+.+.+.. .+..++ ..|..++.|+.+++.++ +..++. .|.+..+|+.+.+.+ .+..++.. +.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 3455677777777777764 466664 45677777888877764 666655 677777778877765 34444443 45
Q ss_pred ccccccEEeccCCCccccCccc-cccccccccc
Q 000887 468 NLVNLHYLNIEGASALRELPLG-MKELKCLRTL 499 (1237)
Q Consensus 468 ~L~~L~~L~l~~~~~l~~ip~~-~~~L~~L~~L 499 (1237)
.+.+|+.+++..+ +..++.. +.+. +|+.+
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 6777777777553 4455443 4444 55544
No 464
>COG4240 Predicted kinase [General function prediction only]
Probab=93.19 E-value=0.29 Score=48.51 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhh-----ccCCCccCHHHHHHH
Q 000887 9 DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIK-----RSSCKLEDLNSVQLE 83 (1237)
Q Consensus 9 ~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 83 (1237)
.-+++-+++|.|+-|+||||++..++.....+.-..++..+..+=.-..+-+..++++.. +......++.-....
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 446688999999999999999999887553333236667765544333333344444432 122244555555566
Q ss_pred HHHHhcCCc
Q 000887 84 LKETVFKKK 92 (1237)
Q Consensus 84 l~~~l~~~~ 92 (1237)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 666656553
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.18 E-value=0.13 Score=50.23 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=25.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCC
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF 42 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f 42 (1237)
...++++|+|..|+|||||+.++........+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~ 35 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGI 35 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCC
Confidence 35679999999999999999999875433333
No 466
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.17 E-value=0.3 Score=55.16 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhhccC------CCccCHHH------H
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIKRSS------CKLEDLNS------V 80 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~------~ 80 (1237)
..++|.|..|+|||||+..++... ..+.++..-++.. ..+.++.+.++..-+... .....+.+ .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCET 239 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999987531 2244555555443 334445555433321110 01111111 1
Q ss_pred HHHHHHHh--cCCcEEEEEeCC
Q 000887 81 QLELKETV--FKKKFLIVLDDV 100 (1237)
Q Consensus 81 ~~~l~~~l--~~~~~LlvlDdv 100 (1237)
+-.+.+++ +++++|+++||+
T Consensus 240 A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 240 ATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHcCCCEEEEEcCh
Confidence 12244444 468999999999
No 467
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.15 E-value=0.32 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 10 ~~~~~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
...+-++..+|++|+||.-.|+.+++..
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 4677899999999999999999998864
No 468
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.14 E-value=0.16 Score=54.09 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-------CccCHHHHHHH
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-------KLEDLNSVQLE 83 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~ 83 (1237)
.+..+|.|.|.+|+|||||+.++.... +... .++.+. .+..+..+ .+.++..+.+.. .-.+.......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l-~~~~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL-KDSV-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh-ccCC-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 457899999999999999999988743 2222 233332 22222221 122333332211 12334445555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 000887 84 LKETVFKKKFLIVLDDVW 101 (1237)
Q Consensus 84 l~~~l~~~~~LlvlDdv~ 101 (1237)
+........-++|++++-
T Consensus 177 l~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 177 APRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHhhcCCcEEEEECCC
Confidence 555444455778899983
No 469
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.45 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998774
No 470
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.12 E-value=0.37 Score=48.51 Aligned_cols=94 Identities=26% Similarity=0.357 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcE
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKF 93 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (1237)
.-|-++|.=|.|||.|++++.+.. .......+-| ... ++.+ ...+...++. +..|+
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~-~~~glrLVEV--~k~-dl~~------------------Lp~l~~~Lr~--~~~kF 141 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEY-ADEGLRLVEV--DKE-DLAT------------------LPDLVELLRA--RPEKF 141 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHH-HhcCCeEEEE--cHH-HHhh------------------HHHHHHHHhc--CCceE
Confidence 358899999999999999987743 3333222222 111 1111 1111112221 25799
Q ss_pred EEEEeCCC-CCChhhHHHhhccccC---CCCCcEEEEEeCch
Q 000887 94 LIVLDDVW-SERYDLWQALKSPFMA---GAPGSRIIVTTRSM 131 (1237)
Q Consensus 94 LlvlDdv~-~~~~~~~~~~~~~~~~---~~~~~~iliTtR~~ 131 (1237)
+|..||.. ++..+.+..+...+-. ..+...++..|.++
T Consensus 142 IlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 142 ILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred EEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 99999982 3333455555444433 24455555555544
No 471
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.2 Score=56.05 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKK 92 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 92 (1237)
++=|.++|++|.|||-||++++...... +|...+..+ +.++ - ......++..+.+.-..-+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGSEF--dEm~----V--------GvGArRVRdLF~aAk~~AP 397 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGSEF--DEMF----V--------GVGARRVRDLFAAAKARAP 397 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCC-----eEeccccch--hhhh----h--------cccHHHHHHHHHHHHhcCC
Confidence 4568899999999999999998753211 222223332 2222 1 1112223333333334569
Q ss_pred EEEEEeCCCC
Q 000887 93 FLIVLDDVWS 102 (1237)
Q Consensus 93 ~LlvlDdv~~ 102 (1237)
++|.+|.++.
T Consensus 398 cIIFIDEiDa 407 (752)
T KOG0734|consen 398 CIIFIDEIDA 407 (752)
T ss_pred eEEEEechhh
Confidence 9999999854
No 472
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.11 E-value=0.7 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|+.|+|||||++.++..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.10 E-value=0.074 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 474
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.97 Score=53.45 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcCCcEEE
Q 000887 16 IPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVFKKKFLI 95 (1237)
Q Consensus 16 v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 95 (1237)
|.++|++|.|||-+|++|+-. .-.=+-.-.++.....+ .....+.+++.+.+.-..++|+|
T Consensus 708 ILLYGPPGTGKTLlAKAVATE-------csL~FlSVKGPELLNMY------------VGqSE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATE-------CSLNFLSVKGPELLNMY------------VGQSEENVREVFERARSAAPCVI 768 (953)
T ss_pred eEEECCCCCchHHHHHHHHhh-------ceeeEEeecCHHHHHHH------------hcchHHHHHHHHHHhhccCCeEE
Q ss_pred EEeCC-----------------CCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhh-----cCCCeEeCCCCChhhh
Q 000887 96 VLDDV-----------------WSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTM-----GSGKNYELKLLSDDDC 153 (1237)
Q Consensus 96 vlDdv-----------------~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~-----~~~~~~~l~~l~~~ea 153 (1237)
.||.+ +..-..-++++-........+.-||=.|-.++..... +-++-+.+++=+.+|.
T Consensus 769 FFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred EeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHH
Q 000887 154 WSVFVAHAFEGRDAGTHGNFESTRQR 179 (1237)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (1237)
..=..+..-+.-.-.++-.+.++|+.
T Consensus 849 k~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 849 KLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred HHHHHHHHHHHccCCCCcCHHHHHhh
No 475
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.08 E-value=0.51 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+..||+|.+|.||||+.+.++...
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcCC
Confidence 468999999999999999998764
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.07 E-value=1.1 Score=46.11 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCCC-hhhHHHhhcc-cc-CCCCCcEEEEEeCchhHHH
Q 000887 77 LNSVQLELKETVFKKKFLIVLDDVWSER-YDLWQALKSP-FM-AGAPGSRIIVTTRSMDVAL 135 (1237)
Q Consensus 77 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~~~~~-~~-~~~~~~~iliTtR~~~~~~ 135 (1237)
.+...-.+.+.+..++=++++|+-...- ....+.+... +. ....|..||++|.+.....
T Consensus 131 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 131 GQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 4444445667777889999999974421 1222233331 21 1223677888888776654
No 477
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.07 E-value=0.17 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.|.|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 478
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.07 E-value=0.35 Score=52.13 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSI 67 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 67 (1237)
.+++|.|.+|+|||++|.+++.+.....-..++|++... +..++...++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm--~~~~l~~R~la~~ 71 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM--SEEELAARLLARL 71 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS---HHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC--CHHHHHHHHHHHh
Confidence 489999999999999999998866443335577776543 3445555555544
No 479
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.06 E-value=0.67 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.-|.|.|++|+|||++|+.++..
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHH
Confidence 35889999999999999998774
No 480
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.04 E-value=0.74 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999998763
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.03 E-value=0.074 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998764
No 482
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.98 Score=46.84 Aligned_cols=70 Identities=27% Similarity=0.339 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc-CC
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF-KK 91 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 91 (1237)
-+-|.++|++|.|||-||++|+.... ..| ++++.. ++...... +-+.+...+.+.-+ .+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-STF-----FSvSSS--------DLvSKWmG------ESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-STF-----FSVSSS--------DLVSKWMG------ESEKLVKNLFEMARENK 225 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-Cce-----EEeehH--------HHHHHHhc------cHHHHHHHHHHHHHhcC
Confidence 36688999999999999999987433 222 233322 11111111 11344444444433 47
Q ss_pred cEEEEEeCCCC
Q 000887 92 KFLIVLDDVWS 102 (1237)
Q Consensus 92 ~~LlvlDdv~~ 102 (1237)
+-+|.+|.++.
T Consensus 226 PSIIFiDEiDs 236 (439)
T KOG0739|consen 226 PSIIFIDEIDS 236 (439)
T ss_pred CcEEEeehhhh
Confidence 89999999953
No 483
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.99 E-value=0.52 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 484
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.98 E-value=1.3 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
No 485
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.97 E-value=0.3 Score=55.93 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCC-cCHHHHHHHHHHHhh--cc-----------CCCccCH-H
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILDSIK--RS-----------SCKLEDL-N 78 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~--~~-----------~~~~~~~-~ 78 (1237)
..++|.|.+|+|||+|+.+++....+.+-+.++++-++.. ..+.++...+...-. .. ......+ .
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~ 241 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 241 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHH
Confidence 4689999999999999999876422222266778777654 345566665554110 00 0011111 1
Q ss_pred -----HHHHHHHHHhcC---CcEEEEEeCCC
Q 000887 79 -----SVQLELKETVFK---KKFLIVLDDVW 101 (1237)
Q Consensus 79 -----~~~~~l~~~l~~---~~~LlvlDdv~ 101 (1237)
..+-.+.+++++ +++||++||+.
T Consensus 242 R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 242 RMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 222235566643 49999999993
No 486
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.95 E-value=0.066 Score=29.49 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=4.7
Q ss_pred CCeEEccCCCcccc
Q 000887 425 LRYLNFSRSEIQCL 438 (1237)
Q Consensus 425 Lr~L~L~~~~i~~l 438 (1237)
||.|++++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.95 E-value=0.39 Score=55.82 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 88 (1237)
.++.|.|.+|+|||||+.+++....+.. ..++|++.... ..++.. -+.+++.... ...+.+++...+.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~-- 168 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE-- 168 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh--
Confidence 6889999999999999999876443322 35788875433 333221 1223332111 12334444433332
Q ss_pred cCCcEEEEEeCC
Q 000887 89 FKKKFLIVLDDV 100 (1237)
Q Consensus 89 ~~~~~LlvlDdv 100 (1237)
.+.-++|+|.+
T Consensus 169 -~~~~~vVIDSI 179 (454)
T TIGR00416 169 -ENPQACVIDSI 179 (454)
T ss_pred -cCCcEEEEecc
Confidence 25567888887
No 488
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.94 E-value=0.72 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.+++|.|+.|+|||||++.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 489
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.93 E-value=0.16 Score=53.51 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCcHHHHHHH-HHhcccccCCCCe-EEEEEcCC-cCHHHHHHHHHHHhhcc------CCCccCHHH-----
Q 000887 14 RVIPLVGMGGIGKTTLAQE-VYNDKLTEAFEPK-AWVCVSDD-FDVLRISKAILDSIKRS------SCKLEDLNS----- 79 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~-~~~~~~~~~f~~~-~w~~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~~~~----- 79 (1237)
..++|.|.+|+|||+||.. +++. ..-+.+ +++-++.. ..+.++.+++...-... ......+..
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~---~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ---KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh---cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 4689999999999999744 4432 223444 55555544 34555555554322111 001111111
Q ss_pred -HHHHHHHHh--cCCcEEEEEeCC
Q 000887 80 -VQLELKETV--FKKKFLIVLDDV 100 (1237)
Q Consensus 80 -~~~~l~~~l--~~~~~LlvlDdv 100 (1237)
..-.+.+++ +++.+|+|+||+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333 468999999999
No 490
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.93 E-value=0.33 Score=56.38 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhcccccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCC-----CccCHHHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSC-----KLEDLNSVQLELKETV 88 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 88 (1237)
.++.|.|.+|+|||||+.+++....+. -..++|++.... ..++... +.+++.... ...+.+++...+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~-- 154 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE-- 154 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh--
Confidence 588999999999999999987744322 235788875433 3333222 344432111 12334444444332
Q ss_pred cCCcEEEEEeCC
Q 000887 89 FKKKFLIVLDDV 100 (1237)
Q Consensus 89 ~~~~~LlvlDdv 100 (1237)
.+.-++|+|.+
T Consensus 155 -~~~~lVVIDSI 165 (446)
T PRK11823 155 -EKPDLVVIDSI 165 (446)
T ss_pred -hCCCEEEEech
Confidence 35567888887
No 491
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.92 E-value=0.62 Score=54.86 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCCChhhHHHhhccccCCCCCcEEEEEeCchhHHHhhcCCCeEeCC
Q 000887 77 LNSVQLELKETVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELK 146 (1237)
Q Consensus 77 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~ 146 (1237)
....+..+.+.|-.++=++++|.=.++-....-.....+....+| .+||.|-|+.+...+.+ .+++++
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t-~I~~ld 224 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVAT-HILELD 224 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhh-heEEec
Confidence 344445566677778889999987543211111122222223455 79999999998876543 445544
No 492
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.84 E-value=0.78 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|.|..|+|||||++.++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999999866
No 493
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.83 E-value=0.84 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYN 35 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~ 35 (1237)
.+++|+|..|.|||||++.++.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999999876
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.81 E-value=0.088 Score=50.14 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000887 15 VIPLVGMGGIGKTTLAQEVY 34 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~ 34 (1237)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999976
No 495
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.1 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
.++|+|+|.+|+||||+...+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999986553
No 496
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.80 E-value=0.062 Score=55.95 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCCCCcEEEEEEcCCCCcHHHHHHHHHhcccccCC-CCeEEEEEcCCcCHHH
Q 000887 8 SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSDDFDVLR 58 (1237)
Q Consensus 8 ~~~~~~~~v~i~G~~G~GKT~La~~~~~~~~~~~f-~~~~w~~~~~~~~~~~ 58 (1237)
...++..+|+|+|.||+|||||.-++......+.. -+|+-|+-+.+++--.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs 97 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS 97 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc
Confidence 34567889999999999999999998775533333 3455665555554333
No 497
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.79 E-value=0.098 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 000887 15 VIPLVGMGGIGKTTLAQEVYNDK 37 (1237)
Q Consensus 15 ~v~i~G~~G~GKT~La~~~~~~~ 37 (1237)
+|+|.|.+|+||||+|..++...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988743
No 498
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.79 E-value=0.35 Score=54.06 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHhcc-cccCCCCeEEEEEcCCcCHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILDSIKRSSCKLEDLNSVQLELKETVF 89 (1237)
Q Consensus 11 ~~~~~v~i~G~~G~GKT~La~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 89 (1237)
..++=+-|+|..|.|||.|.-.+|+.. .+..- ++ -.-....++-..+............ +.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~--------HFh~Fm~~vh~~l~~~~~~~~~l~~----va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR--RV--------HFHEFMLDVHSRLHQLRGQDDPLPQ----VADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc--cc--------cccHHHHHHHHHHHHHhCCCccHHH----HHHHHH
Confidence 456779999999999999999998854 22111 01 1112223333333222122223333 334445
Q ss_pred CCcEEEEEeCCCCCChhhHHHhhccccC-CCCCcEEEEEeCchhH
Q 000887 90 KKKFLIVLDDVWSERYDLWQALKSPFMA-GAPGSRIIVTTRSMDV 133 (1237)
Q Consensus 90 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~-~~~~~~iliTtR~~~~ 133 (1237)
++..||.||.+.-++..+..-+...+.. ...|. |||+|.+...
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 6777999999855433332222222221 23466 5555555433
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.75 E-value=0.1 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHhc
Q 000887 13 FRVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 13 ~~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
..+|.|.|.+|+||||+|..++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998874
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.74 E-value=0.089 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhc
Q 000887 14 RVIPLVGMGGIGKTTLAQEVYND 36 (1237)
Q Consensus 14 ~~v~i~G~~G~GKT~La~~~~~~ 36 (1237)
++++|.|++|+||||+++.++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
Done!