Query 000887
Match_columns 1237
No_of_seqs 436 out of 4697
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 16:20:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000887.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_657-660//hhsearch_pdb/000887hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 405.9 32.5 656 392-1220 69-767 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 358.0 34.3 106 394-501 94-207 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 353.4 21.3 297 10-325 149-473 (549)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 335.3 44.2 574 400-1214 25-639 (680)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 318.3 23.4 286 10-323 144-452 (1249)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 311.2 43.6 114 388-503 37-154 (680)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 310.1 34.5 218 968-1213 350-575 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 310.0 34.5 220 967-1213 349-573 (606)
9 1vt4_I APAF-1 related killer D 1.0 1 1 299.5 18.1 265 11-316 148-436 (1221)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 289.4 38.7 507 401-1175 34-560 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=405.91 Aligned_cols=656 Identities=15% Similarity=0.057 Sum_probs=348.8
Q ss_pred HHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCH--HHCCCCCCCEEECCCCCCCCCCCHHH-C
Q ss_conf 321058999741998256334344534227787786981378750-1311--11066776499737632685588311-0
Q 000887 392 LSDLLPQCKKLRVLSLGSYCITEVPISIGCLKQLRYLNFSRSEIQ-CLPD--AICSLFNLEILILRNCWCLLKLPSRI-G 467 (1237)
Q Consensus 392 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~~~~L~~L~~L~L~~~~~l~~lp~~i-~ 467 (1237)
.+..+..+++|+.++++.+.+..+|+.|+.+++|++|+|++|.+. .+|. .++++++|++|++++|.....+|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 5455658821698754458424---3245332334505623688767215303372034425517658789678899760
Q 000887 468 NLVNLHYLNIEGASALRELPLG---MKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAML 544 (1237)
Q Consensus 468 ~L~~L~~L~l~~~~~l~~ip~~---~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 544 (1237)
++++|++|++++|......|.. ++.+++|++|++..+.. ...
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l------~~~----------------------------- 193 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI------SGD----------------------------- 193 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE------ESC-----------------------------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCC------CCC-----------------------------
T ss_conf 388999898979835885871556643589889898978803------465-----------------------------
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 18889871386507999999854578996620279999954899961199999988799987870199981679987699
Q 000887 545 RVKEGLTDLKLDWRPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRFPSWVGDPSFSNVAVLILKNCRRSTSLP 624 (1237)
Q Consensus 545 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~ 624 (1237)
..+..+++|+.|++.++........+. .+++|+.|++++|.....++
T Consensus 194 -------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 194 -------------------------------VDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp -------------------------------CBCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCHH
T ss_pred -------------------------------CCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCC
T ss_conf -------------------------------784547868989892882788771112--69999989794885878165
Q ss_pred -CCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf -9897466343676078772262652238876667866446634452223333537877622324665331101378784
Q 000887 625 -SLGQLCSLKDLTIVGMSELKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPKL 703 (1237)
Q Consensus 625 -~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 703 (1237)
.++.+++|++|++.+|.....++.. .+++|++|++.++.....+.. .. ...+++|+.|++.+| .+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~l~~~ip~-~~----~~~~~~L~~L~Ls~n-~l 306 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENKFTGEIPD-FL----SGACDTLTGLDLSGN-HF 306 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSEEEESCCC-CS----CTTCTTCSEEECCSS-EE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC--------CCCCCCEEECCCCCCCCCCCH-HH----HHHCCCCCEEECCCC-CC
T ss_conf 77744888898989888665716724--------368789897917855772588-88----844686889989689-67
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 37899998874347760346854359999840189973778744579998899874211354342112211223402899
Q 000887 704 SGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSEKFQKVEQLM 783 (1237)
Q Consensus 704 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~L~~L~ 783 (1237)
.+.+|. .+..++.|+.+++.++...... ....+..+++|+.|+
T Consensus 307 ~~~~p~------------------~~~~l~~L~~L~L~~n~l~~~i-------------------p~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 307 YGAVPP------------------FFGSCSLLESLALSSNNFSGEL-------------------PMDTLLKMRGLKVLD 349 (768)
T ss_dssp EECCCG------------------GGGGCTTCCEEECCSSEEEEEC-------------------CHHHHTTCTTCCEEE
T ss_pred CCCCCH------------------HHHCCCCCCEEECCCCCCCCCC-------------------CHHHHHCCCCCCEEE
T ss_conf 784236------------------7755877667789788525737-------------------978872488887884
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCEECCCCC-C--CCCCCEEEECCCCCHHHHHHHCCCCCCCCCE
Q ss_conf 934788643112234211147877-66556723799821127887-8--9971489864775133311100125774240
Q 000887 784 IVGCEGFVNEICLEKPLQGLQRLT-CLKDLLIGNCPTVVSLPKAC-F--LPNLSEITIQDCNALASLTDGMIYNNARLEV 859 (1237)
Q Consensus 784 l~~c~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~-~--~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~ 859 (1237)
+++|... ..++..+..++ +|+.|+++++.....++... . +++|+.|++++|.....+|.. +.++++|+.
T Consensus 350 Ls~n~l~------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 422 (768)
T 3rgz_A 350 LSFNEFS------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVS 422 (768)
T ss_dssp CCSSEEE------ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCE
T ss_pred CCCCCCC------CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCE
T ss_conf 8478437------623098986322771998627874787676665332477618989778465424877-756898798
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 23047877124443678897648997228783100123334567777653334788886334009998407995423678
Q 000887 860 LRIKRCDSLTSISREHLPSSLQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSLTCLWSG 939 (1237)
Q Consensus 860 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 939 (1237)
|++++|.....++ ..+..+++|+.|.+.++.....++..
T Consensus 423 L~Ls~N~l~~~~p-----------------------------------------~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 423 LHLSFNYLSGTIP-----------------------------------------SSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCSSEEESCCC-----------------------------------------GGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred EECCCCCCCCCCC-----------------------------------------HHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 9895884668546-----------------------------------------77744998898989788154718978
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 87754100456513799603176778988512898918777423212137765554785035656344442345777776
Q 000887 940 GRLPVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLH 1019 (1237)
Q Consensus 940 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 1019 (1237)
...+++|+.|++.+|.....++.....+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCC
T ss_conf 82877732999019951375887881699899897539951896876885689999898978943374887770889899
Q ss_pred EEEECCCCCCCCCCCCCCCC-CCHHHHHHCCCCC---------------------CCC--CCCCCCCCCCEEECCCCCCC
Q ss_conf 15423677854489888997-4113432012000---------------------025--88888775458852589995
Q 000887 1020 EIRIVRCHNLVSLPEDALPS-NVVDVLIEDCDKL---------------------KAL--IPTGTLSSLRELALSECPGI 1075 (1237)
Q Consensus 1020 ~L~l~~c~~l~~l~~~~~~~-~l~~l~l~~~~~~---------------------~~~--~~~~~l~~L~~L~l~~c~~l 1075 (1237)
+|++++|.....+|...... .+..+.+...... ... .....++.+..+++..+.--
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEC
T ss_conf 89898884688279578604212232013454211113444322223322210013556323200232110011331004
Q ss_pred CCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCC-CC
Q ss_conf 202788-9778767357318878666422234787877359984799931126889743368885706543788843-34
Q 000887 1076 VVFPEE-GLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLK-RL 1153 (1237)
Q Consensus 1076 ~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~-~l 1153 (1237)
..+|.. ..+++|+.|++++|.....+|. .++.+++|+.|++++|.....+|. .+..+++|+.|++++ +.+. .+
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~---~l~~L~~L~~LdLs~-N~l~g~i 696 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPD---EVGDLRGLNILDLSS-NKLDGRI 696 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCS-SCCEECC
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCH---HHHCCCCCCEEECCC-CCCCCCC
T ss_conf 62743340335665797858801555877-884141578784868803887896---784777899898978-8023868
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC-----CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9346788899871651689996558888988766576633898821-----023447954564335782775
Q 000887 1154 SSKGFQYLVSLEHLSVFSCPNFTSFPEAGFPSSLLSLEIQRCPLLE-----KCKMRKGQEWPKIAHIPLTLI 1220 (1237)
Q Consensus 1154 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~p~l~-----~~~~~~~~~~~~~~~~~~~~~ 1220 (1237)
| ..+.++++|++|++++|+....+|....+.++....+.+||.+| .|.......|++++|+++++-
T Consensus 697 p-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 697 P-QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp C-GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred C-HHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8-6775788789787968815560899601024897775698321088776788876688898887656678
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=358.00 Aligned_cols=106 Identities=20% Similarity=0.102 Sum_probs=51.5
Q ss_pred HHCCCCCCCCEEECCCCCCC-CCCC--CCCCCCCCCEEECCCCCCC-CCCHHH-CCCCCCCEEECCCCCCCCCCCHH---
Q ss_conf 10589997419982563343-4453--4227787786981378750-131111-06677649973763268558831---
Q 000887 394 DLLPQCKKLRVLSLGSYCIT-EVPI--SIGCLKQLRYLNFSRSEIQ-CLPDAI-CSLFNLEILILRNCWCLLKLPSR--- 465 (1237)
Q Consensus 394 ~~~~~l~~Lr~L~L~~~~i~-~lp~--~~~~l~~L~~L~L~~~~i~-~lp~~~-~~L~~L~~L~L~~~~~l~~lp~~--- 465 (1237)
..+..+++|++|+|++|.+. .+|. .++.+++|++|++++|.+. ..|..+ .++++|++|++++|......|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 33245788998989898578707896787278899989896882677479778563889998989798358858715566
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 105455658821698754458424324533233450
Q 000887 466 IGNLVNLHYLNIEGASALRELPLGMKELKCLRTLTN 501 (1237)
Q Consensus 466 i~~L~~L~~L~l~~~~~l~~ip~~~~~L~~L~~L~~ 501 (1237)
++++++|++|++++| .+..... +..+++|++|++
T Consensus 174 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~L 207 (768)
T 3rgz_A 174 SDGCGELKHLAISGN-KISGDVD-VSRCVNLEFLDV 207 (768)
T ss_dssp TTCCTTCCEEECCSS-EEESCCB-CTTCTTCCEEEC
T ss_pred HCCCCCCCEEECCCC-CCCCCCC-CCCCCCCCEEEC
T ss_conf 435898898989788-0346578-454786898989
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=353.36 Aligned_cols=297 Identities=18% Similarity=0.253 Sum_probs=236.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH---CCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCC-------CCCCH
Q ss_conf 99939999992799829999999980---0011378982999975976--999999999998330589-------95697
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYN---DKLTEAFEPKAWVCVSDDF--DVLRISKAILDSIKRSSC-------KLEDL 77 (1237)
Q Consensus 10 ~~~~~vv~i~G~~G~GKT~La~~~~~---~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~-------~~~~~ 77 (1237)
+.++++|+|+||||+||||||+++|+ ..++.+|++++|+++++.. +...++..++.+++.... ...+.
T Consensus 149 ~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 149 DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 78962899986999988999999998406987466995799997898787999999999999853755345555331469
Q ss_pred HHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHCCC-CEEECCCCCHHHHHH
Q ss_conf 89999999996697-2999996887777626998312256899995999990745678752688-707478999243399
Q 000887 78 NSVQLELKETVFKK-KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSG-KNYELKLLSDDDCWS 155 (1237)
Q Consensus 78 ~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~~-~~~~l~~l~~~ea~~ 155 (1237)
++....+++.+.++ |+|||+||||+.+...|.. .+||+||||||++.++..++.. ..+++++|+.+|||+
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~ 300 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD 300 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 9999999999768984899997999714415432--------69988999749779999708897389899989899999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99997617899999987599999999980299137999976750589978999998201224589997458999976039
Q 000887 156 VFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQDKTEIPSVLKLSYHHL 235 (1237)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~i~~~l~~s~~~L 235 (1237)
||...+++.. .++...+++.+|+++|+|+||||+++|+.++.+ . -+|.+.+....+... ...+..++.+||+.|
T Consensus 301 Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~~-~~~i~~~l~~Sy~~L 374 (549)
T 2a5y_B 301 FLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESRG-LVGVECITPYSYKSL 374 (549)
T ss_dssp HHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHHC-SSTTCCCSSSSSSSH
T ss_pred HHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHHHHHHHCCC-HHHHHHHHHCCCCCC
T ss_conf 9998744899---855689999999999599839999999984434-4-899987578761364-777898975162022
Q ss_pred HHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf 177888985-----------63158999512858899999992--9975675504599989889999962486212589-
Q 000887 236 PSHLKRCFA-----------YCAVLPKDYEFKEKELVLLWIAE--GLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSSN- 301 (1237)
Q Consensus 236 ~~~~~~~~~-----------~la~fp~~~~~~~~~l~~~w~~~--g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~- 301 (1237)
+++.+.||. +||+||+++.++ +..|+++ |++.........++.++ ++++|++++|++....
T Consensus 375 ~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~ 449 (549)
T 2a5y_B 375 AMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM 449 (549)
T ss_dssp HHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS
T ss_pred CHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HHHHHHHCCCEEEECCC
T ss_conf 67999997526522336743235608997666----53311013550026778999999999-99999875883671479
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 988410346799997640165089
Q 000887 302 TESKYVMHDLVHDLAQWASGETCF 325 (1237)
Q Consensus 302 ~~~~~~~H~lv~~~~~~~~~~e~~ 325 (1237)
...+|+|||++|+|++.++.+++.
T Consensus 450 ~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 804999676999999999889899
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=335.27 Aligned_cols=574 Identities=18% Similarity=0.149 Sum_probs=294.5
Q ss_pred CCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEE
Q ss_conf 974199825633434453-422778778698137875013-11110667764997376326855883-110545565882
Q 000887 400 KKLRVLSLGSYCITEVPI-SIGCLKQLRYLNFSRSEIQCL-PDAICSLFNLEILILRNCWCLLKLPS-RIGNLVNLHYLN 476 (1237)
Q Consensus 400 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 476 (1237)
+++++|++++|.++.++. .|..+++|++|++++|.+..+ |..|.++++|++|++++| .+..+|. .++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEE
T ss_conf 88768889899778759788717876758878899648569778740667688889998-56756854530388889898
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 169875445842-4324533233450562368876721530337203442551765878967889976018889871386
Q 000887 477 IEGASALRELPL-GMKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEGLTDLKL 555 (1237)
Q Consensus 477 l~~~~~l~~ip~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 555 (1237)
+++| .+..+|. .++.+++|++|++..+.... .
T Consensus 104 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~---------------------------------------- 136 (680)
T 1ziw_A 104 LMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS------T---------------------------------------- 136 (680)
T ss_dssp CCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC------C----------------------------------------
T ss_pred CCCC-CCCCCCHHHCCCCCCCCEEECCCCCCCC------C----------------------------------------
T ss_conf 9899-6685396674156788889898995246------6----------------------------------------
Q ss_pred EECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCC
Q ss_conf 507999999854578996620279999954899961199999988-799987870199981679987699-989746634
Q 000887 556 DWRPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRFPSW-VGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLK 633 (1237)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 633 (1237)
....+..+++|+.|++.++....++.. +....+++|+.|++++|......+ .++.+++|+
T Consensus 137 ------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 137 ------------------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp ------------------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred ------------------CCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf ------------------72111245567779745884365297886244666321798889825655815553223445
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--
Q ss_conf 367607877226265223887666786644663445222333353787762232466533110137878437899998--
Q 000887 634 DLTIVGMSELKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPKLSGRLPNHL-- 711 (1237)
Q Consensus 634 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-- 711 (1237)
.|.+.++............ ....++|+.|.+.++ .+.+..+..+
T Consensus 199 ~L~l~~~~l~~~~~~~~~~---------------------------------~l~~~~L~~L~L~~n-~l~~~~~~~~~~ 244 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCL---------------------------------ELANTSIRNLSLSNS-QLSTTSNTTFLG 244 (680)
T ss_dssp EEECTTCCCHHHHHHHHHH---------------------------------HHTTSCCCEEECTTS-CCCEECTTTTGG
T ss_pred HHHCCCCCCCHHHHHHHHH---------------------------------HHHHCCCCEEECCCC-CCCCCCHHHHHC
T ss_conf 5430566468056777877---------------------------------753151008874577-436468667514
Q ss_pred ---CCCCEEEECCCCCCC---CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ---874347760346854---35999984018997377874457999889987421135434211221122340289993
Q 000887 712 ---PSLEEIVIAGCMHLA---VSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSEKFQKVEQLMIV 785 (1237)
Q Consensus 712 ---~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~L~~L~l~ 785 (1237)
++|+.|++++|.... ..+..++.|+++++.++...
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------------------- 285 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--------------------------------------- 285 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS---------------------------------------
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC---------------------------------------
T ss_conf 67677888778788767568021167410568557788567---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--------EECCC--CCCCCCCCEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 47886431122342111478776655672379982--------11278--878997148986477513331110012577
Q 000887 786 GCEGFVNEICLEKPLQGLQRLTCLKDLLIGNCPTV--------VSLPK--ACFLPNLSEITIQDCNALASLTDGMIYNNA 855 (1237)
Q Consensus 786 ~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--------~~i~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~ 855 (1237)
...+..+..+++|+.|+++++..- ..+.. ...+++|+.|++++|. +..++...+.+++
T Consensus 286 -----------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 353 (680)
T 1ziw_A 286 -----------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLI 353 (680)
T ss_dssp -----------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCT
T ss_pred -----------CCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHHHCCCC
T ss_conf -----------6586562678885577363313213333355454386562467778888798982-6878855740656
Q ss_pred CCCEEECCCCCC-CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 424023047877-1244436788976489972287831001233345677776533347888863340099984079954
Q 000887 856 RLEVLRIKRCDS-LTSISREHLPSSLQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSLT 934 (1237)
Q Consensus 856 ~L~~L~l~~c~~-l~~~~~~~~~~~L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 934 (1237)
+|+.|++++|.. +..++..... .
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~----------------------------------------~---------------- 377 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFV----------------------------------------S---------------- 377 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTG----------------------------------------G----------------
T ss_pred CCCEEECCCCCHHHHHCCHHHHC----------------------------------------C----------------
T ss_conf 87289887980144323532202----------------------------------------4----------------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 236788775410045651379960317677898851289891877742321-2137765554785035656344442345
Q 000887 935 CLWSGGRLPVTLKRLRIEDCSNFKVLTSECQLPVEVEELTIYGCSNLESIA-ERFHDDACLRSIWISSCENLKSLPKGLS 1013 (1237)
Q Consensus 935 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 1013 (1237)
...++|+.|++.+|......+..+...++|+.|++++|.....++ ..+.++++|++|++++|......+..+.
T Consensus 378 ------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 378 ------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp ------GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred ------CCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHH
T ss_conf ------55686766889999777677544207788888867787575435755325754612784489975422764550
Q ss_pred CCCCCCEEEECCCCCC--CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 7777761542367785--4489888997411343201200002588888775458852589995202788--97787673
Q 000887 1014 NLSHLHEIRIVRCHNL--VSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE--GLSTNLTD 1089 (1237)
Q Consensus 1014 ~l~~L~~L~l~~c~~l--~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~ 1089 (1237)
.+++|++|++++|..- ..+|.. +..+++|++|++++|. +..++.. ..+++|+.
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~----------------------~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSP----------------------FQPLRNLTILDLSNNN-IANINDDMLEGLEKLEI 508 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCT----------------------TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCCHHCCCCCCCCCCCCCC----------------------CCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCE
T ss_conf 075431011014644225667764----------------------5557878999899998-77679446345534688
Q ss_pred EEECCCCCCCCC-------CCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 573188786664-------2223478787735998479993112688974336888570654378884334934678889
Q 000887 1090 LEISGDNMYKPL-------VKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLV 1162 (1237)
Q Consensus 1090 L~l~~~~~l~~~-------~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~ 1162 (1237)
|++++|...... +...+..+++|+.|++++| .+..+|. ..+..+++|+.|++++ +.++.++...|.+++
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~--~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV--EVFKDLFELKIIDLGL-NNLNTLPASVFNNQV 584 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred EECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCC-CCCCCCH--HHCCCCCCCCEEECCC-CCCCCCCHHHHCCCC
T ss_conf 85889973000000046774142337998888889999-7887797--7734666752238999-977767976837898
Q ss_pred CCCEEEECCCCCCCCCCCCCC---CCCCCEEEECCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 987165168999655888898---87665766338988210234-47954564335
Q 000887 1163 SLEHLSVFSCPNFTSFPEAGF---PSSLLSLEIQRCPLLEKCKM-RKGQEWPKIAH 1214 (1237)
Q Consensus 1163 ~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~~p~l~~~~~-~~~~~~~~~~~ 1214 (1237)
+|+.|++++| .++.++...+ +++|+.+++++||..|.|.. .|+..|.....
T Consensus 585 ~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~ 639 (680)
T 1ziw_A 585 SLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 639 (680)
T ss_dssp TCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-
T ss_pred CCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 8888989999-687059668301146657798318970257766899999987367
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=318.31 Aligned_cols=286 Identities=21% Similarity=0.338 Sum_probs=222.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCC--CCC-CCCCEEEEEECCCCC--HHHHHHHHHHHHHCCCC----CCCCHHHH
Q ss_conf 9993999999279982999999998000--113-789829999759769--99999999998330589----95697899
Q 000887 10 AANFRVIPLVGMGGIGKTTLAQEVYNDK--LTE-AFEPKAWVCVSDDFD--VLRISKAILDSIKRSSC----KLEDLNSV 80 (1237)
Q Consensus 10 ~~~~~vv~i~G~~G~GKT~La~~~~~~~--~~~-~f~~~~w~~~~~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~~ 80 (1237)
++++++|+|+||||+||||||+++|++. ... +++.++|++++.... .......++..+..... ...+.++.
T Consensus 144 ~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 223 (1249)
T 3sfz_A 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223 (1249)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 58877799991898888899999860756788627881799997885726799999999998655303334788777899
Q ss_pred HHHHHHHHCCC--CEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH-HCCCCEEECCC-CCHHHHHHH
Q ss_conf 99999996697--299999688777762699831225689999599999074567875-26887074789-992433999
Q 000887 81 QLELKETVFKK--KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALT-MGSGKNYELKL-LSDDDCWSV 156 (1237)
Q Consensus 81 ~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~-~~~~~~~~l~~-l~~~ea~~l 156 (1237)
...++..+.++ |+||||||||+. +++.. .++|++||||||++.++.. ++....+.++. |+++||++|
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l 294 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEI 294 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCH--HHHHH-------HCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 9999999735678789999567997--78876-------36897899992778998763488437982588887889999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC---------CCCHHHH
Q ss_conf 9997617899999987599999999980299137999976750589978999998201224589---------9974589
Q 000887 157 FVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQGVDEWRAILDSKIWNLQD---------KTEIPSV 227 (1237)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---------~~~i~~~ 227 (1237)
|...++.. .+..++.+.+|+++|+|+||||+++|++++.+. ..|.+.+......... ...+..+
T Consensus 295 ~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 295 LSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHHHHCCC-----HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99865798-----134838899999984997799999999862480--57999999986504430346556446779999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCC
Q ss_conf 99976039177888985631589995128588999999929975675504599989889999962486212589-98841
Q 000887 228 LKLSYHHLPSHLKRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSSN-TESKY 306 (1237)
Q Consensus 228 l~~s~~~L~~~~~~~~~~la~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~-~~~~~ 306 (1237)
|.+||+.|++++|.||++||+||+++.++...++..|.++ ++.+..++++|++++|++.... ...+|
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~ 435 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCY 435 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEE
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf 9989986799999999972813799751899999885898------------8899999999974463389637981189
Q ss_pred HHHHHHHHHHHHHCCCE
Q ss_conf 03467999976401650
Q 000887 307 VMHDLVHDLAQWASGET 323 (1237)
Q Consensus 307 ~~H~lv~~~~~~~~~~e 323 (1237)
+||+++|+|++..+.++
T Consensus 436 ~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 436 YLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ECCHHHHHHHHHHTGGG
T ss_pred EECHHHHHHHHHHHHHH
T ss_conf 96689999987450678
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=311.19 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=90.8
Q ss_pred CCCHHHHHCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCC-H
Q ss_conf 9201321058999741998256334344-5342277877869813787501311-11066776499737632685588-3
Q 000887 388 SPMVLSDLLPQCKKLRVLSLGSYCITEV-PISIGCLKQLRYLNFSRSEIQCLPD-AICSLFNLEILILRNCWCLLKLP-S 464 (1237)
Q Consensus 388 ~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp-~ 464 (1237)
...+++..|..+++|++|++++|.+..+ |..|+.+++|++|++++|.+..+|. .|.++++|++|++++| .+..+| .
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSC
T ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHH
T ss_conf 78759788717876758878899648569778740667688889998567568545303888898989899-66853966
Q ss_pred HHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCEEE
Q ss_conf 1105455658821698754458-42432453323345056
Q 000887 465 RIGNLVNLHYLNIEGASALREL-PLGMKELKCLRTLTNFI 503 (1237)
Q Consensus 465 ~i~~L~~L~~L~l~~~~~l~~i-p~~~~~L~~L~~L~~~~ 503 (1237)
.++++++|++|++++| .+..+ |..++.+++|++|.+..
T Consensus 116 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCS
T ss_pred HCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCC
T ss_conf 7415678888989899-52466721112455677797458
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=310.12 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=138.3
Q ss_pred CCCCEEEECCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 85128989187774232--1213776555478503565634444234577777615423677854489888997411343
Q 000887 968 VEVEELTIYGCSNLESI--AERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDVL 1045 (1237)
Q Consensus 968 ~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~ 1045 (1237)
++|++|++++|...... +..+..+++|++|++++|......+..+..+++|++|++++|......+...
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------- 420 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP--------- 420 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT---------
T ss_pred CCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHH---------
T ss_conf 75898878899666456752210567888989898996775788873477457768788886777565212---------
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEECCCC
Q ss_conf 201200002588888775458852589995202788--977876735731887866642--2234787877359984799
Q 000887 1046 IEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE--GLSTNLTDLEISGDNMYKPLV--KWGFHKLTSLRKLYIDGCS 1121 (1237)
Q Consensus 1046 l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--~~~~~~l~~L~~L~l~~c~ 1121 (1237)
+..+++|++|++++|. +...+.. ..+++|+.|++++|....... ...+..+++|+.|++++|.
T Consensus 421 ------------~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 421 ------------FQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ------------TTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred ------------HHCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf ------------4176558889898985-577687787378878889898998885434543124048876688799996
Q ss_pred CCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC--CCCCCEEEECCCCCCC
Q ss_conf 93112688974336888570654378884334934678889987165168999655888898--8766576633898821
Q 000887 1122 DAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPEAGF--PSSLLSLEIQRCPLLE 1199 (1237)
Q Consensus 1122 ~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~~p~l~ 1199 (1237)
+..++. ..+..+++|+.|++++ +.+..++...+.++++| +|++++| .++.++...+ .++|+.+++++||..|
T Consensus 488 -l~~~~~--~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 488 -LSSIDQ--HAFTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp -CCEECT--TTTTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred -CCCCCH--HHHCCCCCCCEEECCC-CCCCCCCHHHHCCCCCC-EEECCCC-CCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf -670686--4632656788898989-80686896684756651-8987689-4142687662567787889677998616
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 02344795456433
Q 000887 1200 KCKMRKGQEWPKIA 1213 (1237)
Q Consensus 1200 ~~~~~~~~~~~~~~ 1213 (1237)
.|...|+..|.+-.
T Consensus 562 ~c~~~~~~~w~~~~ 575 (606)
T 3t6q_A 562 TCSNIYFLEWYKEN 575 (606)
T ss_dssp SGGGHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHC
T ss_conf 67757899999737
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=310.02 Aligned_cols=220 Identities=18% Similarity=0.098 Sum_probs=152.3
Q ss_pred CCCCCEEEECCCCCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88512898918777423--2121377655547850356563444423457777761542367785448988899741134
Q 000887 967 PVEVEELTIYGCSNLES--IAERFHDDACLRSIWISSCENLKSLPKGLSNLSHLHEIRIVRCHNLVSLPEDALPSNVVDV 1044 (1237)
Q Consensus 967 ~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~l 1044 (1237)
.++|+.|++++|..... ++..+..+++|++|++++| .+..+|..+..+++|++|++++|......+...
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------- 419 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA-------- 419 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTT--------
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHH--------
T ss_conf 89888797758736877520122146775548678899-530005540688888965898870587537645--------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 3201200002588888775458852589995202788-977876735731887866642223478787735998479993
Q 000887 1045 LIEDCDKLKALIPTGTLSSLRELALSECPGIVVFPEE-GLSTNLTDLEISGDNMYKPLVKWGFHKLTSLRKLYIDGCSDA 1123 (1237)
Q Consensus 1045 ~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 1123 (1237)
+..+++|++|++++|......+.. ..+++|+.|++++|.......+..++.+++|+.|++++|. +
T Consensus 420 -------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l 485 (606)
T 3vq2_A 420 -------------FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-L 485 (606)
T ss_dssp -------------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-C
T ss_pred -------------HHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCC-C
T ss_conf -------------64621378898968978743355534778789898989837985467760457889989898885-7
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCC
Q ss_conf 11268897433688857065437888433493467888998716516899965588889--8876657663389882102
Q 000887 1124 VSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNFTSFPEAG--FPSSLLSLEIQRCPLLEKC 1201 (1237)
Q Consensus 1124 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~~p~l~~~ 1201 (1237)
..++. ..+..+++|+.|++++| .+..+.+..+.++++|++|++++| .++.+|... ++.+|+.+++++||..|.|
T Consensus 486 ~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 486 EQISW--GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEECT--TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCCCH--HHHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCCCEEECCCC-CCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 76486--56154646898989899-578748777068876898889898-376668767521021748876289866477
Q ss_pred CCCCCCCCCCCC
Q ss_conf 344795456433
Q 000887 1202 KMRKGQEWPKIA 1213 (1237)
Q Consensus 1202 ~~~~~~~~~~~~ 1213 (1237)
...|+..|.+-.
T Consensus 562 ~~~~~~~~l~~~ 573 (606)
T 3vq2_A 562 EHQKFLQWVKEQ 573 (606)
T ss_dssp TTHHHHTTTTTS
T ss_pred CCHHHHHHHHCC
T ss_conf 648999998727
No 9
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=299.46 Aligned_cols=265 Identities=17% Similarity=0.228 Sum_probs=206.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC-EEEEEECCCCCHHHHHHHHHHHHHCCC---C-C-------CCCH
Q ss_conf 993999999279982999999998000-1137898-299997597699999999999833058---9-9-------5697
Q 000887 11 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEP-KAWVCVSDDFDVLRISKAILDSIKRSS---C-K-------LEDL 77 (1237)
Q Consensus 11 ~~~~vv~i~G~~G~GKT~La~~~~~~~-~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~l~~~~---~-~-------~~~~ 77 (1237)
+.+++|+|+||||+||||||+++|++. ++..|+. ++|+++++..+...+...++..++... . . ..+.
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~l 227 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 89718999769996679999999971498874899389998289999999999999998622721022001346799999
Q ss_pred HHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHCCCCEEECC------CC
Q ss_conf 89999999996---6972999996887777626998312256899995999990745678752688707478------99
Q 000887 78 NSVQLELKETV---FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVALTMGSGKNYELK------LL 148 (1237)
Q Consensus 78 ~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~l~------~l 148 (1237)
++....+++.+ .++|+|||+||||+. +.|+.+ + +|++||||||++.++..+.....+.++ +|
T Consensus 228 eeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 228 HSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 99999999999850478879987186818--999864----7---98299994437379986689708994686556896
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 924339999997617899999987599999999980299137999976750589-9789999982012245899974589
Q 000887 149 SDDDCWSVFVAHAFEGRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLRSKQ-GVDEWRAILDSKIWNLQDKTEIPSV 227 (1237)
Q Consensus 149 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~~~~w~~~l~~~~~~~~~~~~i~~~ 227 (1237)
+.+||++||..... .. . .+...+ .|+|+||||+++|++++.+. ....|... ....+..+
T Consensus 299 S~eEA~eLF~~~~g-~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~---------~~~~I~aa 358 (1221)
T 1vt4_I 299 TPDEVKSLLLKYLD-CR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTI 358 (1221)
T ss_dssp CHHHHHHHHHHHHC-CC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC---------SCHHHHHH
T ss_pred CHHHHHHHHHHHCC-CC----H---HHHHHH---HHCCCHHHHHHHHHHHHCCCCCHHHHHCC---------CHHHHHHH
T ss_conf 99999999999749-98----8---999999---96989999999999984889979998669---------86189999
Q ss_pred HHHHHHCCHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999760391778-8898563158999512858899999992997567550459998988999996248621258998841
Q 000887 228 LKLSYHHLPSHL-KRCFAYCAVLPKDYEFKEKELVLLWIAEGLVQQSEDNKQLEDLGSGYFHDLLSRSLFQKSSNTESKY 306 (1237)
Q Consensus 228 l~~s~~~L~~~~-~~~~~~la~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~ 306 (1237)
|++||+.|+++. |+||++||+||+++.++...++..|+++| ++.+..++++|+++||++.. ....+|
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rY 426 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTI 426 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEE
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HHHHHHHHHHHHHHCCEEEE-CCCCEE
T ss_conf 999998488999999999971779999877999998766778-----------89999999999961988986-899989
Q ss_pred HHHHHHHHHH
Q ss_conf 0346799997
Q 000887 307 VMHDLVHDLA 316 (1237)
Q Consensus 307 ~~H~lv~~~~ 316 (1237)
+|||++++++
T Consensus 427 rMHDLllELr 436 (1221)
T 1vt4_I 427 SIPSIYLELK 436 (1221)
T ss_dssp BCCCHHHHHH
T ss_pred EEHHHHHHHH
T ss_conf 8609999985
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=289.43 Aligned_cols=507 Identities=14% Similarity=0.096 Sum_probs=249.1
Q ss_pred CCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECC
Q ss_conf 741998256334344-53422778778698137875013-1111066776499737632685588311054556588216
Q 000887 401 KLRVLSLGSYCITEV-PISIGCLKQLRYLNFSRSEIQCL-PDAICSLFNLEILILRNCWCLLKLPSRIGNLVNLHYLNIE 478 (1237)
Q Consensus 401 ~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 478 (1237)
.+++|++++|.++.+ |..|+.+++|++|++++|.+..+ |..|.++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 98754458-42432453323345056236887672153033720344255176587896788997601888987138650
Q 000887 479 GASALREL-PLGMKELKCLRTLTNFIVGKDSGCALRDLKNWKFLRGRLCISGLENVIDSQEANEAMLRVKEGLTDLKLDW 557 (1237)
Q Consensus 479 ~~~~l~~i-p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 557 (1237)
+| .+..+ |..++.+++|++|.+
T Consensus 114 ~n-~i~~l~~~~~~~l~~L~~L~L-------------------------------------------------------- 136 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQKTLESLYL-------------------------------------------------------- 136 (606)
T ss_dssp TS-CCSCGGGSCCTTCTTCCEEEC--------------------------------------------------------
T ss_pred CC-CCCCCCCCHHCCCCCCCEEEC--------------------------------------------------------
T ss_conf 26-766578101223782238988--------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCC-
Q ss_conf 7999999854578996620279999954899961199999--988799987870199981679987699-989746634-
Q 000887 558 RPRRDGDSVDEAREKNILDMLKPHSNIKRLEIHSYGGTRF--PSWVGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLK- 633 (1237)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~- 633 (1237)
.++....+ |.+. .+++|+.|++++|......+ .++.+++|+
T Consensus 137 --------------------------------~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 137 --------------------------------GSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp --------------------------------CSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred --------------------------------CCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCHHHHHHHCCCCE
T ss_conf --------------------------------79834114765456---8765687776568445549656332215640
Q ss_pred -EEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCC
Q ss_conf -367607877226265223887666786644663445222333353787762232466--53311013787843789999
Q 000887 634 -DLTIVGMSELKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFP--RLRKLSIKKCPKLSGRLPNH 710 (1237)
Q Consensus 634 -~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~ 710 (1237)
.|++.++. +..+....+. ...|+.|.+.++....... ..+. .++.+.+..+..+..
T Consensus 182 l~L~l~~n~-l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~---------~~l~~~~l~~l~~~~~~~~~~----- 240 (606)
T 3t6q_A 182 LSLNLNGND-IAGIEPGAFD------SAVFQSLNFGGTQNLLVIF---------KGLKNSTIQSLWLGTFEDMDD----- 240 (606)
T ss_dssp EEEECTTCC-CCEECTTTTT------TCEEEEEECTTCSCHHHHH---------HHTTTCEEEEEECCCCTTSCC-----
T ss_pred EEEECCCCC-CCCCCHHHHH------HCCCCCCCCCCCHHHHHHH---------HHCCCCCHHHEECHHHCCCCC-----
T ss_conf 389667981-4754866730------0100135567726677776---------513356442200201102641-----
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEECCC
Q ss_conf 887434776034685435999984018997377874457999889987421135434211221122--340289993478
Q 000887 711 LPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSEKF--QKVEQLMIVGCE 788 (1237)
Q Consensus 711 l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~--~~L~~L~l~~c~ 788 (1237)
..+ ....+..+ ..++.+++.++.
T Consensus 241 ------~~i-------------------------------------------------~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 241 ------EDI-------------------------------------------------SPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp ------CCC-------------------------------------------------CGGGGGGGGGSEEEEEECTTCC
T ss_pred ------CCC-------------------------------------------------CHHHHCHHHCCCEEEEEEECCC
T ss_conf ------226-------------------------------------------------8667430320750599944576
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCC-CCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf 86431122342111478776655672379982112788-78997148986477513331110012577424023047877
Q 000887 789 GFVNEICLEKPLQGLQRLTCLKDLLIGNCPTVVSLPKA-CFLPNLSEITIQDCNALASLTDGMIYNNARLEVLRIKRCDS 867 (1237)
Q Consensus 789 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~ 867 (1237)
-. ...+..+..+++|++|+++++. ++.+|.. ..+++|+.|++++|. +..++...+..+++|+.|++++|..
T Consensus 266 l~------~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 266 FF------NISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp CS------SCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred CC------CCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 58------5577774456678889562882-67778214165468889771687-6867602330157689888989974
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf 12444367889764899722878310012333456777765333478888633400999840799542367887754100
Q 000887 868 LTSISREHLPSSLQAIEIRDCETLQCVLDDREKSCTSSSVTEKNINSSSSTYLDLESLFVYRCPSLTCLWSGGRLPVTLK 947 (1237)
Q Consensus 868 l~~~~~~~~~~~L~~L~l~~c~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 947 (1237)
...++... ...+++|+.|++
T Consensus 338 ~~~~~~~~----------------------------------------~~~l~~L~~L~l-------------------- 357 (606)
T 3t6q_A 338 RLELGTGC----------------------------------------LENLENLRELDL-------------------- 357 (606)
T ss_dssp CCBCCSST----------------------------------------TTTCTTCCEEEC--------------------
T ss_pred CCCCCHHH----------------------------------------HHCCCCCCEEEC--------------------
T ss_conf 44346245----------------------------------------506675898878--------------------
Q ss_pred EEEEECCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEEEC
Q ss_conf 4565137996031--76778988512898918777423212137765554785035656344442-34577777615423
Q 000887 948 RLRIEDCSNFKVL--TSECQLPVEVEELTIYGCSNLESIAERFHDDACLRSIWISSCENLKSLPK-GLSNLSHLHEIRIV 1024 (1237)
Q Consensus 948 ~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~ 1024 (1237)
.+|...... +......++|++|++.+|......+..+..+++|++|++++|......+. .+..+++|++|+++
T Consensus 358 ----~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 358 ----SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp ----CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred ----CCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf ----8996664567522105678889898989967757888734774577687888867775652124176558889898
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCC---CCCCCCCCEEECCCCCCCC
Q ss_conf 67785448988899741134320120000258888877545885258999520-2788---9778767357318878666
Q 000887 1025 RCHNLVSLPEDALPSNVVDVLIEDCDKLKALIPTGTLSSLRELALSECPGIVV-FPEE---GLSTNLTDLEISGDNMYKP 1100 (1237)
Q Consensus 1025 ~c~~l~~l~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~---~~~~~L~~L~l~~~~~l~~ 1100 (1237)
+|......+... ..+++|++|++++|.-... ++.. ..+++|+.|++++|.....
T Consensus 434 ~n~l~~~~~~~~----------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 434 HSLLDISSEQLF----------------------DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TCCCBTTCTTTT----------------------TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCCCCCCHHHH----------------------HCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 985577687787----------------------3788788898989988854345431240488766887999966706
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 422234787877359984799931126889743368885706543788843349346788899871651689996
Q 000887 1101 LVKWGFHKLTSLRKLYIDGCSDAVSFPDVGKGVILPTSLTSITISDFPKLKRLSSKGFQYLVSLEHLSVFSCPNF 1175 (1237)
Q Consensus 1101 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l 1175 (1237)
.+. .+..+++|++|++++|. +..++. ..+..+.+| .|++++ +.+..+++..+..+++|++|++++|+-.
T Consensus 492 ~~~-~~~~l~~L~~L~Ls~N~-l~~~~~--~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 492 DQH-AFTSLKMMNHVDLSHNR-LTSSSI--EALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CTT-TTTTCTTCCEEECCSSC-CCGGGG--GGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CHH-HHCCCCCCCEEECCCCC-CCCCCH--HHHCCCCCC-EEECCC-CCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 864-63265678889898980-686896--684756651-898768-9414268766256778788967799861
Done!